Your job contains 1 sequence.
>013826
MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL
VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV
LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT
RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ
LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST
HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN
NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIP
SSLIESLRPVYKSGDV
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013826
(436 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2130839 - symbol:RH1 "RNA helicase 1" species:... 1686 1.6e-173 1
UNIPROTKB|F1MGC9 - symbol:DDX51 "Uncharacterized protein"... 735 9.6e-73 1
UNIPROTKB|E2R5R1 - symbol:DDX51 "Uncharacterized protein"... 723 1.8e-71 1
UNIPROTKB|Q8N8A6 - symbol:DDX51 "ATP-dependent RNA helica... 721 2.9e-71 1
ZFIN|ZDB-GENE-040927-28 - symbol:ddx51 "DEAD (Asp-Glu-Ala... 712 2.6e-70 1
UNIPROTKB|E1BUI4 - symbol:DDX51 "Uncharacterized protein"... 699 6.3e-69 1
RGD|1309580 - symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) box po... 699 6.3e-69 1
MGI|MGI:1916913 - symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) bo... 696 1.3e-68 1
FB|FBgn0004556 - symbol:Dbp73D "Dead box protein 73D" spe... 553 1.9e-53 1
ASPGD|ASPL0000059362 - symbol:AN0637 species:162425 "Emer... 237 6.2e-51 3
POMBASE|SPCC285.03 - symbol:SPCC285.03 "ATP-dependent RNA... 486 2.3e-46 1
UNIPROTKB|G4N9X9 - symbol:MGG_03229 "ATP-dependent RNA he... 227 9.9e-43 3
ZFIN|ZDB-GENE-050522-359 - symbol:zgc:112350 "zgc:112350"... 262 7.3e-41 3
POMBASE|SPAC823.08c - symbol:SPAC823.08c "ATP-dependent R... 254 7.9e-41 3
DICTYBASE|DDB_G0293740 - symbol:ddx51 "DEAD/DEAH box heli... 430 2.0e-40 1
POMBASE|SPAC30D11.03 - symbol:ddx27 "ATP-dependent RNA he... 256 3.8e-40 3
ZFIN|ZDB-GENE-031001-8 - symbol:ddx27 "DEAD (Asp-Glu-Ala-... 273 5.2e-40 3
FB|FBgn0032919 - symbol:CG9253 species:7227 "Drosophila m... 254 5.5e-39 3
UNIPROTKB|Q96GQ7 - symbol:DDX27 "Probable ATP-dependent R... 263 7.9e-39 3
MGI|MGI:2385884 - symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) bo... 261 8.9e-39 3
UNIPROTKB|A1A4H6 - symbol:DDX27 "Probable ATP-dependent R... 260 1.6e-38 3
SGD|S000001107 - symbol:RRP3 "Protein involved in rRNA pr... 248 1.9e-38 3
UNIPROTKB|F1Q073 - symbol:DDX27 "Uncharacterized protein"... 260 2.5e-38 3
UNIPROTKB|J9P9C6 - symbol:DDX27 "Uncharacterized protein"... 260 2.9e-38 3
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer... 237 1.3e-37 3
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 233 4.0e-37 3
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 233 4.0e-37 3
UNIPROTKB|F1NQV5 - symbol:DDX27 "Uncharacterized protein"... 254 9.5e-37 3
SGD|S000003931 - symbol:DRS1 "Nucleolar DEAD-box protein ... 217 3.6e-36 3
UNIPROTKB|E1C187 - symbol:DDX27 "Uncharacterized protein"... 254 8.2e-36 3
RGD|1311124 - symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box po... 239 3.9e-35 3
MGI|MGI:2136689 - symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) bo... 237 2.3e-34 3
UNIPROTKB|F1S7D9 - symbol:DDX49 "Uncharacterized protein"... 236 2.7e-34 3
UNIPROTKB|F1NA53 - symbol:DDX49 "Uncharacterized protein"... 215 4.1e-34 3
UNIPROTKB|E2RBM7 - symbol:DDX49 "Uncharacterized protein"... 234 5.1e-34 3
UNIPROTKB|Q9Y6V7 - symbol:DDX49 "Probable ATP-dependent R... 230 1.6e-33 3
UNIPROTKB|F1NYX0 - symbol:DDX49 "Uncharacterized protein"... 215 2.0e-33 3
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo... 278 2.6e-33 2
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1... 278 2.6e-33 2
UNIPROTKB|Q29S22 - symbol:DDX47 "Probable ATP-dependent R... 278 2.7e-33 2
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"... 271 5.2e-33 2
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"... 278 6.0e-33 2
UNIPROTKB|Q9H0S4 - symbol:DDX47 "Probable ATP-dependent R... 276 6.0e-33 2
TAIR|locus:2173517 - symbol:AT5G60990 species:3702 "Arabi... 257 8.2e-33 2
ZFIN|ZDB-GENE-031030-3 - symbol:ddx49 "DEAD (Asp-Glu-Ala-... 220 2.8e-32 3
DICTYBASE|DDB_G0270396 - symbol:ddx49 "DEAD/DEAH box heli... 227 3.0e-32 3
UNIPROTKB|I3LQ10 - symbol:LOC100626268 "Uncharacterized p... 235 3.9e-32 2
TAIR|locus:2087832 - symbol:PMH1 "putative mitochondrial ... 239 1.2e-31 3
CGD|CAL0001062 - symbol:orf19.3704 species:5476 "Candida ... 345 8.4e-31 1
WB|WBGene00022148 - symbol:Y71G12B.8 species:6239 "Caenor... 265 1.4e-30 2
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he... 230 2.1e-30 3
UNIPROTKB|I3L976 - symbol:DDX47 "Uncharacterized protein"... 256 2.2e-30 2
DICTYBASE|DDB_G0280147 - symbol:ddx47 "DEAD/DEAH box heli... 258 6.8e-30 2
WB|WBGene00012059 - symbol:T26G10.1 species:6239 "Caenorh... 259 8.4e-30 2
UNIPROTKB|E1BII7 - symbol:DDX43 "Uncharacterized protein"... 244 1.2e-29 3
TAIR|locus:2087852 - symbol:PMH2 "putative mitochondrial ... 228 1.5e-29 3
UNIPROTKB|Q8EI96 - symbol:srmB "ATP-dependent RNA helicas... 185 2.6e-29 3
TIGR_CMR|SO_0947 - symbol:SO_0947 "ATP-dependent RNA heli... 185 2.6e-29 3
UNIPROTKB|Q8EDC4 - symbol:SO_2838 "ATP-dependent RNA heli... 218 2.9e-29 3
TIGR_CMR|SO_2838 - symbol:SO_2838 "ATP-dependent RNA heli... 218 2.9e-29 3
ZFIN|ZDB-GENE-030131-9685 - symbol:ddx18 "DEAD (Asp-Glu-A... 197 3.3e-29 3
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ... 235 4.1e-29 2
MGI|MGI:1925644 - symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) bo... 226 4.5e-29 3
TAIR|locus:504955106 - symbol:emb1138 "embryo defective 1... 227 5.8e-29 2
FB|FBgn0010220 - symbol:Dbp45A "DEAD box protein 45A" spe... 177 8.6e-29 3
RGD|621743 - symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box pol... 224 1.6e-28 3
UNIPROTKB|A8MTP9 - symbol:DDX52 "Probable ATP-dependent R... 220 1.7e-28 3
UNIPROTKB|F1NTK9 - symbol:DDX54 "Uncharacterized protein"... 211 2.0e-28 3
TAIR|locus:2130918 - symbol:AT4G16630 species:3702 "Arabi... 244 2.3e-28 2
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli... 225 2.6e-28 3
UNIPROTKB|Q9KNA4 - symbol:VC_A0061 "ATP-dependent RNA hel... 204 2.6e-28 3
TIGR_CMR|VC_A0061 - symbol:VC_A0061 "ATP-dependent RNA he... 204 2.6e-28 3
FB|FBgn0021995 - symbol:Rs1 "Rs1" species:7227 "Drosophil... 253 3.4e-28 2
UNIPROTKB|I3LJA0 - symbol:DDX52 "Uncharacterized protein"... 220 3.5e-28 3
UNIPROTKB|E2R316 - symbol:DDX55 "Uncharacterized protein"... 213 5.7e-28 2
UNIPROTKB|Q9NXZ2 - symbol:DDX43 "Probable ATP-dependent R... 222 5.8e-28 3
UNIPROTKB|Q9Y2R4 - symbol:DDX52 "Probable ATP-dependent R... 220 6.3e-28 3
UNIPROTKB|G3MYF0 - symbol:LOC100300937 "Uncharacterized p... 227 8.4e-28 3
UNIPROTKB|Q8NHQ9 - symbol:DDX55 "ATP-dependent RNA helica... 222 8.8e-28 2
UNIPROTKB|F1NEQ3 - symbol:DDX18 "Uncharacterized protein"... 193 1.1e-27 3
UNIPROTKB|Q4K4H4 - symbol:rhlE_2 "Putative ATP-dependent ... 234 1.1e-27 2
POMBASE|SPAC1006.07 - symbol:SPAC1006.07 "translation ini... 195 1.3e-27 3
UNIPROTKB|F1P8J6 - symbol:DDX55 "Uncharacterized protein"... 213 1.4e-27 2
UNIPROTKB|A4R715 - symbol:DHH1 "ATP-dependent RNA helicas... 201 1.8e-27 3
CGD|CAL0006152 - symbol:DHH1 species:5476 "Candida albica... 202 2.1e-27 3
UNIPROTKB|Q5AAW3 - symbol:DHH1 "ATP-dependent RNA helicas... 202 2.1e-27 3
UNIPROTKB|F1RFL5 - symbol:DDX55 "Uncharacterized protein"... 219 2.5e-27 2
UNIPROTKB|E2RB54 - symbol:DDX52 "Uncharacterized protein"... 219 2.9e-27 3
UNIPROTKB|A4QYM6 - symbol:DRS1 "ATP-dependent RNA helicas... 246 3.1e-27 2
POMBASE|SPBC543.06c - symbol:dbp8 "ATP-dependent RNA heli... 195 3.3e-27 3
DICTYBASE|DDB_G0281711 - symbol:ddx27 "DEAD/DEAH box heli... 241 3.5e-27 2
ZFIN|ZDB-GENE-021212-1 - symbol:ddx55 "DEAD (Asp-Glu-Ala-... 229 3.6e-27 2
MGI|MGI:1919240 - symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) bo... 202 3.9e-27 3
UNIPROTKB|Q9KS53 - symbol:VC1407 "ATP-dependent RNA helic... 198 4.2e-27 3
TIGR_CMR|VC_1407 - symbol:VC_1407 "ATP-dependent RNA heli... 198 4.2e-27 3
UNIPROTKB|A5D7C1 - symbol:DDX52 "Probable ATP-dependent R... 219 4.4e-27 3
RGD|2324094 - symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box po... 221 4.9e-27 2
ASPGD|ASPL0000062195 - symbol:AN10125 species:162425 "Eme... 245 5.6e-27 2
UNIPROTKB|Q0C354 - symbol:rhlE "ATP-dependent RNA helicas... 192 5.7e-27 3
WB|WBGene00021277 - symbol:Y23H5B.6 species:6239 "Caenorh... 201 5.9e-27 3
WARNING: Descriptions of 764 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2130839 [details] [associations]
symbol:RH1 "RNA helicase 1" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006406 "mRNA export from nucleus" evidence=RCA] [GO:0006606
"protein import into nucleus" evidence=RCA] [GO:0006626 "protein
targeting to mitochondrion" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0017151 "DEAD/H-box RNA helicase
binding" evidence=TAS] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 GO:GO:0017151 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z97339 GO:GO:0008026 eggNOG:COG0513
PROSITE:PS51195 EMBL:AL161542 KO:K14807 HOGENOM:HOG000239572
OMA:CSKTELE EMBL:Y11187 EMBL:Y11154 IPI:IPI00538787 PIR:A71424
PIR:E85175 RefSeq:NP_193320.6 UniGene:At.33
ProteinModelPortal:Q7FGZ2 SMR:Q7FGZ2 STRING:Q7FGZ2 PaxDb:Q7FGZ2
PRIDE:Q7FGZ2 EnsemblPlants:AT4G15850.1 GeneID:827266
KEGG:ath:AT4G15850 GeneFarm:907 TAIR:At4g15850 InParanoid:Q7FGZ2
Genevestigator:Q7FGZ2 GermOnline:AT4G15850 Uniprot:Q7FGZ2
Length = 522
Score = 1686 (598.6 bits), Expect = 1.6e-173, P = 1.6e-173
Identities = 326/431 (75%), Positives = 376/431 (87%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MGISSLFPVQVAVW ETIGPG FERD+C+NSPTGSGKTLSYALPIVQ L++R VRCLRAL
Sbjct: 49 MGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRAL 108
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
VVLPTRDLALQVKDVF AIAPAVGLSVG AVGQSSIA EIS+LIK PKL+AGICYDP+D+
Sbjct: 109 VVLPTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDL 168
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
Q L+SAVDILVATPGRLMDHIN T+GFTLEHL YLVVDETDRLLREAYQ+WLPTVLQLT
Sbjct: 169 SQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLT 228
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240
++ +++ F + F+PSAFGSL+T+RR VERGFK KPYPRLVKMVLSATLTQDP+KL Q
Sbjct: 229 QTSDDSLFPSFTPFVPSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQ 288
Query: 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST 300
LDLHHPLF+TTG +RY+LPE+LE +LICE+ +KP+YLVALL+S EKCI+FTSSVE+T
Sbjct: 289 LDLHHPLFMTTGGSRYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETT 348
Query: 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360
RLC LLN FG+ +IK KEYSG QS+RSK LKAFR+G IQVLV+SDA+TRGMDV+GV
Sbjct: 349 RRLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVT 408
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIP 420
NV+NYD P + KT+IHRAGRTARAGQ GRCFTLL EV+RF KLL+K +DSCPI+ IP
Sbjct: 409 NVINYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHEVRRFSKLLEKVGSDSCPIYPIP 468
Query: 421 SSLIESLRPVY 431
+ ++S+R Y
Sbjct: 469 PTSLDSIRATY 479
>UNIPROTKB|F1MGC9 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 OMA:HIDQTPG GeneTree:ENSGT00550000075141
EMBL:DAAA02044956 IPI:IPI01003566 ProteinModelPortal:F1MGC9
Ensembl:ENSBTAT00000022893 Uniprot:F1MGC9
Length = 546
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 180/458 (39%), Positives = 255/458 (55%)
Query: 2 GISSLFPVQVAV----WQETIGPGLFER------DLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV + T L R DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 94 GISSYFPVQAAVIPAVLESTANGFLVSRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLH 153
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
RAV +RALVVLPT++LA QV VF A L V L GQ S+A E L++ K
Sbjct: 154 RAVCQVRALVVLPTKELAQQVSKVFNVYTDATPLRVALITGQKSLAKEQESLVQ--KTAD 211
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G + DI+VATPGRL+DHI+ T GF+L+HL +L++DE DR++ +Q+
Sbjct: 212 GF-----------RCLADIMVATPGRLVDHIDQTPGFSLQHLRFLIIDEADRMIDSMHQS 260
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ +E + F + L C P L K++ SATL
Sbjct: 261 WLPRVVAAA-FPSEGPRDPCAVFQRTQPRVLTAASMCC--------PQMPLQKLLFSATL 311
Query: 232 TQDPNKLAQLDLHHPLFLTTGET-----------------RYKLPERLESYKLICESKLK 274
TQ+P KL QL L+ P +TG +Y P L+ + + C + K
Sbjct: 312 TQNPEKLQQLGLYQPRLFSTGSAHRGPSDPDIDVDEDSGGKYTFPTGLKHHYVPCSLRFK 371
Query: 275 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 334
PL ++ L+ + + + FT+S E++HRL L+ FG + + E+S R LK
Sbjct: 372 PLVILHLILEMNFSRVLCFTNSRENSHRLFLLVQAFGG--VTVAEFSSRYGPGQRKSILK 429
Query: 335 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
F +GKIQ+L+S+DAM RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL
Sbjct: 430 QFEQGKIQLLISTDAMARGIDVQGVQLVVNYDAPQYLRTYVHRVGRTARAGKSGQAFTLL 489
Query: 395 HKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
K + +RF ++L++ H PS L++ L P Y+
Sbjct: 490 LKVQERRFLRMLEEGGVPGLERHDTPSELLQPLVPQYE 527
>UNIPROTKB|E2R5R1 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 KO:K14807 OMA:HIDQTPG GeneTree:ENSGT00550000075141
CTD:317781 EMBL:AAEX03014583 RefSeq:XP_543351.2
Ensembl:ENSCAFT00000010222 GeneID:486226 KEGG:cfa:486226
Uniprot:E2R5R1
Length = 631
Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
Identities = 184/457 (40%), Positives = 258/457 (56%)
Query: 2 GISSLFPVQVAVWQ---ETIGPG-LFER------DLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV E+I G L R DLC+++PTGSGKTL++ +P+VQ L
Sbjct: 181 GISSYFPVQAAVIPTLLESIANGFLVARGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLC 240
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
RAV +RALVVLPT++LA QV VF A L V L GQ S+ E L+++
Sbjct: 241 RAVCQVRALVVLPTKELAQQVSKVFNIYTDATPLRVALITGQKSLVKEQESLVQK----- 295
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
+ + D++VATPGRL+DHI+ T GF+L+HL +L++DE DR++ +Q+
Sbjct: 296 --------TVDGFRCLADVVVATPGRLVDHIDQTPGFSLQHLRFLIIDEADRMIDSMHQS 347
Query: 172 WLPTVLQLT-RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230
WLP V++ SD N D L L+ + P L K++ SAT
Sbjct: 348 WLPRVVEAAFPSDVAN---DPFALLQRR--QLQATTAASISC-----PQMPLQKLLFSAT 397
Query: 231 LTQDPNKLAQLDLHHP-LFLT------------TGET--RYKLPERLESYKLICESKLKP 275
LTQ+P KL QL L+ P LF T GE+ +Y P L + + C + KP
Sbjct: 398 LTQNPEKLQQLGLYQPRLFSTGLAGRGPRDIDRDGESGGKYTFPTGLSHHYVPCSLRTKP 457
Query: 276 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 335
L ++ L+ + + FT+S E++HRL L+ FG + E+S R R LK
Sbjct: 458 LAILHLILERNFSRVLCFTNSRENSHRLFLLVQAFGG--VAAAEFSSRCRPGQRKVVLKQ 515
Query: 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395
F +GKIQ+L+S+DAM RG+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL
Sbjct: 516 FEQGKIQLLISTDAMARGIDVQGVQLVINYDAPQYLRTYVHRVGRTARAGRTGQAFTLLL 575
Query: 396 KDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
K + +RF ++L +A H I S L++ L P Y+
Sbjct: 576 KVQERRFLQMLAEAGVPKMARHDIHSELLQPLVPRYE 612
>UNIPROTKB|Q8N8A6 [details] [associations]
symbol:DDX51 "ATP-dependent RNA helicase DDX51"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 KO:K14807 OMA:HIDQTPG CTD:317781
HOGENOM:HOG000239572 HOVERGEN:HBG081427 OrthoDB:EOG4JM7PM
EMBL:AK097078 EMBL:AC138466 EMBL:BC012461 EMBL:BC040185
EMBL:CR936870 IPI:IPI00217541 RefSeq:NP_778236.2 UniGene:Hs.445168
ProteinModelPortal:Q8N8A6 SMR:Q8N8A6 IntAct:Q8N8A6 STRING:Q8N8A6
PhosphoSite:Q8N8A6 DMDM:229462978 PaxDb:Q8N8A6 PRIDE:Q8N8A6
Ensembl:ENST00000397333 GeneID:317781 KEGG:hsa:317781
UCSC:uc001ujy.4 GeneCards:GC12M132621 H-InvDB:HIX0018137
HGNC:HGNC:20082 HPA:HPA039503 neXtProt:NX_Q8N8A6
PharmGKB:PA134974036 InParanoid:Q8N8A6 PhylomeDB:Q8N8A6
GenomeRNAi:317781 NextBio:96442 Bgee:Q8N8A6 CleanEx:HS_DDX51
Genevestigator:Q8N8A6 GermOnline:ENSG00000185163 Uniprot:Q8N8A6
Length = 666
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 182/455 (40%), Positives = 256/455 (56%)
Query: 2 GISSLFPVQVAVWQ---ET------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV E+ +G G + DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 217 GISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLS 276
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF A L V L GQ S+A E L++ K
Sbjct: 277 RVVCHIRALVVLPTKELAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQ--KTAD 334
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G Y + DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+
Sbjct: 335 G--Y---------RCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQS 383
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ F P A L+ + V P L K++ SATL
Sbjct: 384 WLPRVVAAA-------FQSEDPADPCAL--LQRRQAQAVTAASTCCPQMPLQKLLFSATL 434
Query: 232 TQDPNKLAQLDLHHPLFLTTG-------ET-------RYKLPERLESYKLICESKLKPLY 277
TQ+P KL QL LH P +TG +T +Y P L + + C KPL
Sbjct: 435 TQNPEKLQQLGLHQPRLFSTGLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLV 494
Query: 278 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 337
++ L+ +G + + FT+S E++HRL L+ FG + + E+S R LK F
Sbjct: 495 VLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRMILKQFE 552
Query: 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 397
+GKIQ+L+S+DA RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K
Sbjct: 553 QGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKV 612
Query: 398 EVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+ +RF ++L +A H + S L++ L P Y+
Sbjct: 613 QERRFLRMLTEAGAPELQRHELSSKLLQPLVPRYE 647
>ZFIN|ZDB-GENE-040927-28 [details] [associations]
symbol:ddx51 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
51" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040927-28 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
KO:K14807 EMBL:AY648772 IPI:IPI00500210 RefSeq:NP_001003864.1
UniGene:Dr.77952 ProteinModelPortal:Q6DRI7 STRING:Q6DRI7
PRIDE:Q6DRI7 GeneID:445387 KEGG:dre:445387 CTD:317781
HOGENOM:HOG000239572 HOVERGEN:HBG081427 InParanoid:Q6DRI7
OrthoDB:EOG4JM7PM NextBio:20832091 ArrayExpress:Q6DRI7
Uniprot:Q6DRI7
Length = 652
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 175/451 (38%), Positives = 246/451 (54%)
Query: 2 GISSLFPVQVAVWQ---ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSN 51
GI S FPVQ V E++G GL RD+C+++PTGSGKTL++ +P+VQ LS
Sbjct: 208 GIQSFFPVQAEVIPAILESVGSGLLVGPGGYRPRDVCVSAPTGSGKTLAFVIPVVQALSK 267
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R VR +RAL VLPT++LA QV +VF+A L V + GQ S A E + L ++
Sbjct: 268 RVVRQVRALAVLPTKELAQQVSNVFSAYTEGSSLKVVMITGQKSFAAEQTAL---SEIRG 324
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G+ + S DI+VATPGRL+DHIN F+L+HL +L++DE DR++ +Q+
Sbjct: 325 GVSH----------SMADIVVATPGRLVDHINKNSSFSLQHLRFLIIDEADRMIDSMHQS 374
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WL V + S + S F + G + P L K++ SATL
Sbjct: 375 WLSQVTKAVYSTPGE--THTSVFRRTVPGPITAASL--------SPPQIPLQKLLFSATL 424
Query: 232 TQDPNKLAQLDLHHP-LFLTT---------GETRYKLPERLESYKLICESKLKPLYLVAL 281
TQ+P KL LDLH P LF +T + + P+ L Y + C KPL ++
Sbjct: 425 TQNPEKLQLLDLHQPRLFSSTHSLTDNPAQSQDTFHFPQGLSEYYVPCTFSKKPLIILHF 484
Query: 282 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 341
L L + FT+S E HRL L+ FG +++ E+S R KTLK F +GKI
Sbjct: 485 LLRLKFSPALCFTNSREGAHRLYLLVKLFGG--VEVAEFSSKLSPGERQKTLKDFEKGKI 542
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
+L+S+DA RG+D+ GV V+NYD P YI+TYIHR GRTARAG+ G FT L K + KR
Sbjct: 543 PLLISTDAAARGIDINGVKCVINYDAPQYIRTYIHRVGRTARAGKAGLAFTFLLKVQEKR 602
Query: 402 FKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
F K++ A + + ++S+ Y+
Sbjct: 603 FLKMVSDAGSPGIQKQHVHPEALKSMESRYE 633
>UNIPROTKB|E1BUI4 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 OMA:HIDQTPG GeneTree:ENSGT00550000075141
EMBL:AADN02043240 IPI:IPI00601309 Ensembl:ENSGALT00000010245
Uniprot:E1BUI4
Length = 676
Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
Identities = 181/458 (39%), Positives = 254/458 (55%)
Query: 2 GISSLFPVQV----AVWQET-----IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GI S FPVQ AV Q +G G + +D+C+++PTGSGKTLS+ +PIVQ L +
Sbjct: 224 GIESFFPVQAEVIPAVLQSASNGYLVGQGGYRPKDICVSAPTGSGKTLSFVIPIVQVLLD 283
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF GL V L GQ S A E E++ + K+
Sbjct: 284 RVVCQVRALVVLPTKELAQQVSKVFNIYTDGTGLKVVLITGQKSFAKE-QEMLVQKKV-T 341
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G C S DI+VATPGRL DHI+ T GF+L L +L+VDE DR++ + +Q
Sbjct: 342 GYC-----------SLADIIVATPGRLADHISKTPGFSLTQLRFLIVDEADRMIDDMHQN 390
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WL V++ EN F + G + C P L K++ SATL
Sbjct: 391 WLNQVVKAA-FQAENEAGSNMLFQRTKPGPVTAASCC--------YPQIPLQKLLFSATL 441
Query: 232 TQDPNKLAQLDLHHP-LF---------LTTG-------ETRYKLPERLESYKLICESKLK 274
TQDP KL QL L P LF L G E +Y LPE L + C+ K
Sbjct: 442 TQDPEKLQQLGLFQPRLFTSVYSEKKTLRDGTETKEDCEEKYTLPEGLSQSYVPCDLNSK 501
Query: 275 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 334
PL L+ + + + + FT+S E++HRL L+ FG I + E+S + R +T+K
Sbjct: 502 PLLLLHFMLTKKFTRVLCFTNSREASHRLFLLVQAFGG--ITVAEFSSRLPPNERQRTMK 559
Query: 335 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
F +GKIQ+L+S+DA RG+D++GVN V+NYD P +I+TYIHR GRTARAG+ G F+++
Sbjct: 560 EFEQGKIQLLISTDATARGIDIKGVNCVINYDTPQFIRTYIHRVGRTARAGKAGLAFSMV 619
Query: 395 HKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+ + +RF ++L+ A H + L++ L Y+
Sbjct: 620 LRIQERRFLRMLKDAGIPDIKQHLVKGKLLKPLVQQYE 657
>RGD|1309580 [details] [associations]
symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 51"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309580 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:HIDQTPG OrthoDB:EOG4JM7PM IPI:IPI00371200
Ensembl:ENSRNOT00000056729 UCSC:RGD:1309580 ArrayExpress:D3ZQ94
Uniprot:D3ZQ94
Length = 635
Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
Identities = 177/460 (38%), Positives = 255/460 (55%)
Query: 2 GISSLFPVQVAVWQ---ET------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GISS FPVQ AV E+ +G G ++ DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 185 GISSYFPVQAAVIPALLESADNGFLVGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLH 244
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF L V L GQ S+A E L++ K
Sbjct: 245 RVVCHIRALVVLPTKELAQQVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQ--KTAD 302
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G C DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+
Sbjct: 303 GFC-----------CLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQS 351
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC---GVERGFKDKPYPRLVKMVLS 228
WLP V+ A+ + GS ++R V P L K++ S
Sbjct: 352 WLPRVVA------------AAFYTEDPTGSCALLQRTQPQAVTAASTCIPQMPLQKLLFS 399
Query: 229 ATLTQDPNKLAQLDLHHP-LFLT---------TGET-----RYKLPERLESYKLICESKL 273
ATLTQ+P KL +L L+ P LF T T E +Y P L + + C
Sbjct: 400 ATLTQNPEKLQRLGLYQPRLFSTRLGHQSPRDTVEVDENLGKYTFPVGLTHHYVPCRLSS 459
Query: 274 KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 333
KPL + L+ + + + FT+S E++HRL L FG + + E+S R K L
Sbjct: 460 KPLIVFHLVLGMNFSRALCFTNSRENSHRLFLLAQAFGG--VSVAEFSSRYGPGQRKKIL 517
Query: 334 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
K F +GKIQ+L+S+DA RG+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTL
Sbjct: 518 KQFEQGKIQLLISTDATARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTL 577
Query: 394 LHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKS 433
L K + ++F +++ +A H +P L++ L Y++
Sbjct: 578 LLKVQERKFLQMVSEAGVPELACHEVPRKLLQPLVARYET 617
>MGI|MGI:1916913 [details] [associations]
symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 51"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1916913 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
KO:K14807 OMA:HIDQTPG GeneTree:ENSGT00550000075141 CTD:317781
HOGENOM:HOG000239572 HOVERGEN:HBG081427 OrthoDB:EOG4JM7PM
EMBL:AK152599 EMBL:BC060646 IPI:IPI00396728 RefSeq:NP_081432.2
UniGene:Mm.392735 UniGene:Mm.5267 ProteinModelPortal:Q6P9R1
SMR:Q6P9R1 PhosphoSite:Q6P9R1 PaxDb:Q6P9R1 PRIDE:Q6P9R1
Ensembl:ENSMUST00000031478 GeneID:69663 KEGG:mmu:69663
UCSC:uc008yre.2 InParanoid:Q6P9R1 ChiTaRS:DDX51 NextBio:330022
Bgee:Q6P9R1 CleanEx:MM_DDX51 Genevestigator:Q6P9R1
GermOnline:ENSMUSG00000029504 Uniprot:Q6P9R1
Length = 639
Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 176/457 (38%), Positives = 256/457 (56%)
Query: 2 GISSLFPVQVAVWQ---ET------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 51
GI+S FPVQ AV E+ IG G ++ DLC+++PTGSGKTL++ +P+VQ L +
Sbjct: 189 GITSYFPVQAAVIPALLESADHGFLIGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLH 248
Query: 52 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 111
R V +RALVVLPT++LA QV VF L V L GQ S+A E L++ K
Sbjct: 249 RVVCHIRALVVLPTKELAQQVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQ--KTAD 306
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G + DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+
Sbjct: 307 GF-----------RCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQS 355
Query: 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231
WLP V+ +S+ T + L+ + + P L K++ SATL
Sbjct: 356 WLPRVVAAAF------YSEGPT---GSCALLQRTQPQALTAASTCVPQMPLQKLLFSATL 406
Query: 232 TQDPNKLAQLDLHHP-LFLT---------TGET-----RYKLPERLESYKLICESKLKPL 276
TQDP KL +L L+ P LF T T E +Y P L + + C KPL
Sbjct: 407 TQDPEKLQRLGLYQPRLFSTRLGQQSPKDTAEVDENSGKYTFPVGLTHHYVPCRLSSKPL 466
Query: 277 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 336
++ L+ + + + FT+S E++HRL L FG + + E+S R K LK F
Sbjct: 467 IVLHLVLRMSCSRALCFTNSRENSHRLYLLAQAFGG--VSVAEFSSRYGPGQRKKILKQF 524
Query: 337 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 396
+GKIQ+L+S+DA RG+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K
Sbjct: 525 EQGKIQLLISTDATARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLK 584
Query: 397 DEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKS 433
+ ++F +++ +A H IP L++ L Y++
Sbjct: 585 VQERKFLQMVSEAGVPELTHHEIPRKLLQPLVARYET 621
>FB|FBgn0004556 [details] [associations]
symbol:Dbp73D "Dead box protein 73D" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0005730 GO:GO:0022008 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 KO:K14807 GeneTree:ENSGT00550000075141 EMBL:M74824
EMBL:AF132173 EMBL:BT010045 PIR:S28762 RefSeq:NP_476833.1
UniGene:Dm.3199 ProteinModelPortal:P26802 SMR:P26802 PaxDb:P26802
PRIDE:P26802 EnsemblMetazoa:FBtr0075347 GeneID:39871
KEGG:dme:Dmel_CG9680 CTD:39871 FlyBase:FBgn0004556
InParanoid:P26802 OMA:CSKTELE OrthoDB:EOG4B8GVH PhylomeDB:P26802
GenomeRNAi:39871 NextBio:815810 Bgee:P26802 GermOnline:CG9680
Uniprot:P26802
Length = 687
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 163/444 (36%), Positives = 236/444 (53%)
Query: 1 MGISSLFPVQVAV--W--QETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVR 55
M I LFPVQ V W + P F RD+C+++PTGSGKTL++A+PIVQ LS R V
Sbjct: 155 MKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQR-VD 213
Query: 56 C-LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 114
C +RALVVLP +LALQV V + + L V L Q + DE +L+++ K G
Sbjct: 214 CKVRALVVLPVAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYK---GKY 270
Query: 115 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 174
Y S DI+V TPGRL+DH++AT+GF L+ L +LV+DE DR++ +Q WL
Sbjct: 271 Y----------SKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLY 320
Query: 175 TVLQLTRSDNENRFSDAST-----FLPSAFGSL--KTIRRCGVERGFKDKPYPRLVKMVL 227
+ + + + L ++FG K + + + + RL + L
Sbjct: 321 HLDSHVKETTDQLLAGTQAPLCYAELQASFGKQPHKLLFSATLSQDPEKLQDLRLFQPRL 380
Query: 228 SAT-LTQDPNKLAQLDLHHPLFLTT-GET--RYKLPERLESYKLICESKLKPLYLVALLQ 283
AT LT K A + LT G+ RY P L + E +LKPL + AL++
Sbjct: 381 FATVLTMPVLKDATEEGADTEALTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVFALVE 440
Query: 284 SLGEEKCIVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
++ + FT+S + RL +L F + K+ E SG VR++ L+ F GKI
Sbjct: 441 KYKWKRFLCFTNSSDQATRLTFVLKVLFQKYSTKVSELSGNLSAKVRNERLRDFAAGKIN 500
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
L+ SDA+ RG+DV V+ V++Y+ P +I TYIHR GRTARAG+ G T+L + ++ F
Sbjct: 501 GLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRTARAGRKGTAVTVLTEQDMTLF 560
Query: 403 KKLLQKADND-SCPIHSIPSSLIE 425
KK+L A+ IH P I+
Sbjct: 561 KKILSDANKGLGEEIHVSPDIEIQ 584
>ASPGD|ASPL0000059362 [details] [associations]
symbol:AN0637 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:BN001308
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14807 HOGENOM:HOG000203294 EMBL:AACD01000008 RefSeq:XP_658241.1
ProteinModelPortal:Q5BFP3 EnsemblFungi:CADANIAT00002039
GeneID:2876415 KEGG:ani:AN0637.2 OMA:KQAREAC OrthoDB:EOG4CRQ7F
Uniprot:Q5BFP3
Length = 853
Score = 237 (88.5 bits), Expect = 6.2e-51, Sum P(3) = 6.2e-51
Identities = 75/193 (38%), Positives = 102/193 (52%)
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNEN 186
VDIL+ TPGRL+DHI T+GFTL+HL +LV+DE DRLL E++Q W+ V+Q L
Sbjct: 427 VDILICTPGRLVDHIRYTKGFTLKHLQWLVIDEADRLLNESFQEWVDVVMQSLDARKAYG 486
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
F + FL SL+T K+ PR K+VLSAT+T+D +KL L L +P
Sbjct: 487 AFGPSGRFLADLGMSLQT----------KE---PR--KVVLSATMTKDVSKLNSLRLTNP 531
Query: 247 LFLTTG------------------ETRYKLPERLESYKL-ICESKLKPLYLVALLQSLGE 287
+ G + R+ LP L Y + + + + KPLYL+ LL L E
Sbjct: 532 RLVVVGGSDQTTTADDESGVVVHADERFTLPTTLREYSIAVGDGEHKPLYLLRLL--LSE 589
Query: 288 EKCIVFTSSVEST 300
K V SS + T
Sbjct: 590 MKLDV-PSSTKRT 601
Score = 225 (84.3 bits), Expect = 6.2e-51, Sum P(3) = 6.2e-51
Identities = 48/122 (39%), Positives = 71/122 (58%)
Query: 291 IVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 349
++FT S ES RL LL + I + S KTL A+R+GKI +++++D
Sbjct: 685 LIFTKSSESASRLSRLLALLNPSISGLIGTIVKSNKSSASRKTLSAYRQGKISIIIATDR 744
Query: 350 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
+RG+D++ + +V+NYD PA I TY+HR GRTARAG G +TL+ E + F + K
Sbjct: 745 ASRGLDLQSLTHVINYDVPASITTYVHRVGRTARAGNEGSAWTLVAHREGRWFTNEISKG 804
Query: 410 DN 411
N
Sbjct: 805 SN 806
Score = 188 (71.2 bits), Expect = 6.2e-51, Sum P(3) = 6.2e-51
Identities = 48/120 (40%), Positives = 63/120 (52%)
Query: 2 GISSLFPVQVAVWQETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
G F VQ AV + GP D+C+++ TGSGKTLSY LP+V L LR L
Sbjct: 270 GYKEAFAVQAAVIPLLLKGPNNHTGDICVSAATGSGKTLSYVLPLVTELEQIPAPRLRGL 329
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
+V+PTR+L Q ++ GL VG AVG +I DE L++ +E Y PE V
Sbjct: 330 IVVPTRELVKQAREACEFCTAGTGLRVGSAVGNVAIKDEQRSLMR---IEH--VYSPESV 384
>POMBASE|SPCC285.03 [details] [associations]
symbol:SPCC285.03 "ATP-dependent RNA helicase Dbp6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPCC285.03 GO:GO:0005829
GO:GO:0005524 GO:GO:0005730 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14807 EMBL:D89259 PIR:T41249 PIR:T43184
RefSeq:NP_588332.1 ProteinModelPortal:Q76PD3
EnsemblFungi:SPCC285.03.1 GeneID:2538809 KEGG:spo:SPCC285.03
HOGENOM:HOG000203294 OMA:HIDQTPG OrthoDB:EOG490BK3 NextBio:20799991
Uniprot:Q76PD3
Length = 604
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 133/409 (32%), Positives = 204/409 (49%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85
D+C+++ TGSGKTLSY +PIVQ LS+R V LR +V++PTR+L +QV F GL
Sbjct: 175 DVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGL 234
Query: 86 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 145
V GQ S+ E +L G E + +D+LV+TPGRL+DHI
Sbjct: 235 QVCAWTGQKSLRHETYQL-------NG---------DENECRIDVLVSTPGRLVDHIRND 278
Query: 146 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVL-QLTRS---DNENRFSD-----ASTFLP 196
F+L+HL Y+V+DE DRLL +++Q W+ TV+ +++ N++ D + TFLP
Sbjct: 279 ESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPKCLQNKSNILDLDQNISPTFLP 338
Query: 197 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ---LDLHHPLFLTTGE 253
L +++ R + S L L Q +++ +
Sbjct: 339 DIDTLLPYRLPSPLQKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDA 398
Query: 254 TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST---HRLCTLLNHF 310
+ +P L+ Y + S+ KP+ L L+ S + F S E+ HRL L++
Sbjct: 399 IVFSVPPTLQEYHVSVSSE-KPILLYHLIHSKNLTNILCFVKSNEAAARLHRLLELIHES 457
Query: 311 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 370
++ + R K + F G + +LV SD M RG+DV NV+NYD P
Sbjct: 458 LNQSFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLS 517
Query: 371 IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSI 419
+++Y+HR GRTARAG+ G +TL+ E F KL+++ + PI I
Sbjct: 518 VRSYVHRIGRTARAGREGFAWTLVQSHEGHHFSKLVKQLRR-TLPIKRI 565
>UNIPROTKB|G4N9X9 [details] [associations]
symbol:MGG_03229 "ATP-dependent RNA helicase dbp6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM001234
GO:GO:0008026 KO:K14807 RefSeq:XP_003716750.1
EnsemblFungi:MGG_03229T0 GeneID:2676463 KEGG:mgr:MGG_03229
Uniprot:G4N9X9
Length = 896
Score = 227 (85.0 bits), Expect = 9.9e-43, Sum P(3) = 9.9e-43
Identities = 46/117 (39%), Positives = 70/117 (59%)
Query: 288 EKCIVFTSSVESTHRLCTLLNHFGELRIK--IKEYSGLQRQSVRSKTLKAFREGKIQVLV 345
+ ++FT S ES RL LL ++ I + R S R K + ++ GK+++LV
Sbjct: 705 DSVLIFTKSNESALRLSRLLEIIAPRQVASCIGTLTSTTRTSERKKVINQYKSGKLRILV 764
Query: 346 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
+SD + RG+D+ +++VVNYD P ++TY+HR GRTARAG+ GR +T K E F
Sbjct: 765 ASDLVARGLDLPNLDHVVNYDMPPSVRTYVHRVGRTARAGRAGRAWTFFTKTEAGWF 821
Score = 184 (69.8 bits), Expect = 9.9e-43, Sum P(3) = 9.9e-43
Identities = 54/169 (31%), Positives = 86/169 (50%)
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
+ L S VDIL+ TPGRL++HI T GF L+++ +LVVDE D+LL ++YQ WL V++
Sbjct: 477 VDHLVSKVDILICTPGRLVEHIERTPGFNLDYVRWLVVDEADKLLEQSYQQWLDVVMEKL 536
Query: 181 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK--DKPYPRLVKMVLSATLTQDPNKL 238
S N+ D + G K I + R +K R +M++ ++T P
Sbjct: 537 -STNKPGCRDF--MFQNKSGVRKVILSATMTRNVSLLNKLNLRRPEMIVLESVTAVPTSA 593
Query: 239 A--QLDLHHPLFLTTGETRYKLPERLESYKL-ICESKLKPLYLVALLQS 284
+ D+ + LP +L + + + + + KP+YLV LL S
Sbjct: 594 SGPTTDIAG-VSAEASSYELALPSQLLEFAIKVRDPEQKPMYLVDLLSS 641
Score = 163 (62.4 bits), Expect = 9.9e-43, Sum P(3) = 9.9e-43
Identities = 47/132 (35%), Positives = 69/132 (52%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 61
G F VQ A + + DL I++ TGSGKTL+Y LP+++ +S AV LRAL+
Sbjct: 319 GYPGAFAVQTAAIPRLLPRPDRQGDLVISAATGSGKTLAYVLPMIRDISLGAVTKLRALI 378
Query: 62 VLPTRDLALQVKDVFAAIAPAVG-------LSVGLAVGQSSIADEISELIKRPKLEAGIC 114
V+PTR+L QV +V A A + +G AVG + E +L+ + +
Sbjct: 379 VVPTRELVQQVHEVCNICAAAYARQPNRKTVRIGTAVGNQAFKKEQEKLMDKDRR----- 433
Query: 115 YDPEDVLQELQS 126
YDPE + +QS
Sbjct: 434 YDPEGYARLVQS 445
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 262 (97.3 bits), Expect = 7.3e-41, Sum P(3) = 7.3e-41
Identities = 62/190 (32%), Positives = 104/190 (54%)
Query: 217 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 275
K PR + L SAT+T+ KL + L P+ + ++Y ++L+ + + SK K
Sbjct: 248 KVIPRDRRTFLFSATMTKKVQKLQRAALQDPVKCSVS-SKYATVDKLQQFYIFIPSKYKD 306
Query: 276 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 335
YLV++L L +VF + +T R+ LL + G I + G Q+ R L
Sbjct: 307 CYLVSILNELAGNSFMVFCGTCNNTQRVALLLRNLGITAIPLH---GQMSQNKRLGALNK 363
Query: 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395
F+ VL+++D +RG+D+ V+ V+N+D P + K YIHR GRTARAG+ G+ T +
Sbjct: 364 FKSKSRSVLLATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVT 423
Query: 396 KDEVKRFKKL 405
+ +V+ F+++
Sbjct: 424 QYDVELFQRI 433
Score = 144 (55.7 bits), Expect = 7.3e-41, Sum P(3) = 7.3e-41
Identities = 35/100 (35%), Positives = 58/100 (58%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++A+P++Q+L A R L LV+ PTR+
Sbjct: 102 PTKIQI--EAIPVALQGRDVIGLAETGSGKTGAFAVPVLQSLLACAQR-LHTLVLTPTRE 158
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 107
LA Q+ + F A+ ++G+ + VG + + L K+P
Sbjct: 159 LAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAKKP 198
Score = 128 (50.1 bits), Expect = 7.3e-41, Sum P(3) = 7.3e-41
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 130 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN-RF 188
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L +++ + +L++ D F
Sbjct: 200 VVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRRTFLF 259
Query: 189 SDAST 193
S T
Sbjct: 260 SATMT 264
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 254 (94.5 bits), Expect = 7.9e-41, Sum P(3) = 7.9e-41
Identities = 65/196 (33%), Positives = 99/196 (50%)
Query: 210 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 269
+++ K P+ R ++ SAT+T KL + LH P+ + +++ + L L
Sbjct: 210 IDKILKIIPHERRT-LLFSATMTSKVEKLQRASLHQPVRVAVS-SKFSTVDTLIQRYLFF 267
Query: 270 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 329
K K YLV L+ L I+F +V T RL LL G I + G QS R
Sbjct: 268 PFKHKDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLH---GQLSQSNR 324
Query: 330 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 389
L F+ G LV++D RG+D+ V+ V+NYD P K YIHR GRTARAG+ G+
Sbjct: 325 LGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGK 384
Query: 390 CFTLLHKDEVKRFKKL 405
L+ + +++ F ++
Sbjct: 385 SIALVTQYDLEPFLRI 400
Score = 148 (57.2 bits), Expect = 7.9e-41, Sum P(3) = 7.9e-41
Identities = 39/120 (32%), Positives = 65/120 (54%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F + QE I L +RD+ + TGSGKT ++ALP++Q L N A+V+ PTR
Sbjct: 66 FKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFF-AVVLAPTR 124
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ + F AI ++G+ + VG + + L K+P + +C P ++ L++
Sbjct: 125 ELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVL--VC-TPGRLMDHLEN 181
Score = 130 (50.8 bits), Expect = 7.9e-41, Sum P(3) = 7.9e-41
Identities = 24/50 (48%), Positives = 37/50 (74%)
Query: 130 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
+LV TPGRLMDH+ T+GF+L++L YL++DE DRLL + + +L++
Sbjct: 167 VLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKI 216
>DICTYBASE|DDB_G0293740 [details] [associations]
symbol:ddx51 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0293740 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000218
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14807 OMA:HIDQTPG RefSeq:XP_629093.1
ProteinModelPortal:Q54BD6 EnsemblProtists:DDB0234210 GeneID:8629386
KEGG:ddi:DDB_G0293740 Uniprot:Q54BD6
Length = 563
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 113/297 (38%), Positives = 172/297 (57%)
Query: 3 ISSLFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
I +LFPVQ QE + P + D+C+ +PTGSGKTL+YA+P+VQ + R VR +R
Sbjct: 35 IINLFPVQ----QEIV-PFINRTEGHDICVCAPTGSGKTLAYAIPLVQKIVKRVVRRVRV 89
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
V++PT DL +QV+ F +I L V L++G E LIK Y E
Sbjct: 90 AVIVPTHDLVIQVEKTFQSIIKGTDLVV-LSLGVKPFHIEQKLLIKNHS------YG-EH 141
Query: 120 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
L E S VDI+V+TPGR++DHIN T GFTL++L YLV+DE DRLLR+++Q WL V+
Sbjct: 142 ALYE--SLVDIIVSTPGRIVDHINETLGFTLKYLNYLVIDEADRLLRQSFQDWLEIVIDS 199
Query: 180 TRSDNE-NRFSDASTFLPSAFGSLKTIRRC-GVERGFKDKPYP-----RLVKMVLSATLT 232
T ++ N+ + ++ G ++ + ++ + +LVK++LSAT+T
Sbjct: 200 TNQHSDLNQQQEEQLIKYNSKGDIELFEKSISLKDNNNQMNHLCWSEFKLVKLLLSATMT 259
Query: 233 QDPNKLAQLDLHHPLFLTTGETR---YKLPERLESYKLICESKLKPLYLVALL-QSL 285
+P+K++ L L+ PLF TT +T+ Y +P L+ +I KPL L+ ++ +SL
Sbjct: 260 YNPSKISLLQLNAPLFFTTSKTKEIKYSMPSTLKECYIISNGDQKPLVLLNIIYESL 316
Score = 374 (136.7 bits), Expect = 2.9e-34, P = 2.9e-34
Identities = 88/231 (38%), Positives = 138/231 (59%)
Query: 221 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR---YKLPERLESYKLICESKLKPLY 277
+LVK++LSAT+T +P+K++ L L+ PLF TT +T+ Y +P L+ +I KPL
Sbjct: 248 KLVKLLLSATMTYNPSKISLLQLNAPLFFTTSKTKEIKYSMPSTLKECYIISNGDQKPLV 307
Query: 278 LVALL-QSL------GE--EKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQR 325
L+ ++ +SL GE +K I FT SV+ THRL TLL G+ L+ +EYS
Sbjct: 308 LLNIIYESLLKNNANGENKKKIICFTKSVDITHRLNTLLKLIGQVDKLKFTCEEYSSSLS 367
Query: 326 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 385
R+ L F+ +I +L+ SD M+RGMD++ ++ V+NY+ P I Y+HR GRTARAG
Sbjct: 368 TVERADLLSRFKLNQIDILICSDIMSRGMDIQDIDVVINYNTPPNITLYVHRVGRTARAG 427
Query: 386 QLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIP--SSLIESLRPVYKSG 434
G +T++ K E+K + +++KA+ S +H + ++ E + YK G
Sbjct: 428 NFGVSYTIVDKSEIKYYISMMKKAER-SQTLHCLKWKPNVYEKFQSSYKLG 477
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 256 (95.2 bits), Expect = 3.8e-40, Sum P(3) = 3.8e-40
Identities = 62/188 (32%), Positives = 105/188 (55%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPL--FLTTGETRYKLPERLESYKLICESKL-KPLYLVAL 281
M+ SAT+T + L +L L+ P+ F+ +T KL + E ++ + +L +P L+ L
Sbjct: 440 MLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQ-EFVRVRPQRELLRPAMLIYL 498
Query: 282 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 341
+ L + I+F S H++ + FG L + E G Q R + L+ FR+GK
Sbjct: 499 CKELFHRRTIIFFRSKAFAHKMRVI---FGLLSLNATEIHGSLSQEQRVRALEDFRDGKC 555
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
L+++D +RG+D++G+ V+NY+ PA + Y+HR GRTARAG+ GR TL + + K
Sbjct: 556 NYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKV 615
Query: 402 FKKLLQKA 409
K + + +
Sbjct: 616 LKGVFKNS 623
Score = 149 (57.5 bits), Expect = 3.8e-40, Sum P(3) = 3.8e-40
Identities = 40/111 (36%), Positives = 61/111 (54%)
Query: 2 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLR 58
G+S+L F V + +TI L +D+ + TGSGKT ++ +PI++ L R V R
Sbjct: 273 GLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTR 332
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
L++ PTR+LA+Q V IA + V L +G S+ + EL KRP +
Sbjct: 333 VLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDI 383
Score = 135 (52.6 bits), Expect = 3.8e-40, Sum P(3) = 3.8e-40
Identities = 24/57 (42%), Positives = 41/57 (71%)
Query: 122 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
QEL+ DI++ATPGR +DH+ ++GFT+E++ +V+DE DR+L + + L ++Q
Sbjct: 375 QELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQ 431
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 273 (101.2 bits), Expect = 5.2e-40, Sum P(3) = 5.2e-40
Identities = 65/208 (31%), Positives = 115/208 (55%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 282
M+ SAT++++ LA + L P+ + P + + I +K + + ALL
Sbjct: 382 MLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDREAIVAALL 441
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
++ ++FT + + HR+ LL G +K+ E G Q+ R ++L+ F++ +I
Sbjct: 442 TRTFQDHVMLFTQTKKQAHRMHILLGLMG---LKVGELHGNLSQTQRLESLRRFKDEQID 498
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
+LV++D RG+D+EGV V+N+ P +K Y+HR GRTARAG++GR +L+ + E K
Sbjct: 499 ILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETERKML 558
Query: 403 KKLLQKADNDSCPIHS--IPSSLIESLR 428
K++++KA P+ + IP +I R
Sbjct: 559 KEIVKKA---KFPVKARVIPQEVILKFR 583
Score = 139 (54.0 bits), Expect = 5.2e-40, Sum P(3) = 5.2e-40
Identities = 36/109 (33%), Positives = 57/109 (52%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLR 58
MG P+Q A + GL +D+C + TG+GKT ++ LP+++ L R + R
Sbjct: 219 MGFKQPTPIQKAC----VPVGLLGKDICACAATGTGKTAAFMLPVLERLIYKPRETQVTR 274
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 107
LV++PTR+L +QV V +A +S LAVG + + + L P
Sbjct: 275 VLVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAALRAGP 323
Score = 123 (48.4 bits), Expect = 5.2e-40, Sum P(3) = 5.2e-40
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
L++ D+L+ATPGRL+DH++ T F L + L++DE DR+L E ++ + ++++
Sbjct: 319 LRAGPDVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEIIRM 374
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 254 (94.5 bits), Expect = 5.5e-39, Sum P(3) = 5.5e-39
Identities = 61/190 (32%), Positives = 102/190 (53%)
Query: 217 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 275
K PR + L SAT+T+ KL + L P+ + +Y+ E+L+ L K K
Sbjct: 230 KVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSN-KYQTVEQLQQSYLFIPVKYKD 288
Query: 276 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 335
+YLV +L L ++F S+ +T + +L G I + G Q+ R L
Sbjct: 289 VYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLH---GQMSQNKRLAALNK 345
Query: 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395
F+ +L+S+D +RG+D+ V+ VVN+D P + K YIHR GRTARAG+ G+ TL+
Sbjct: 346 FKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVS 405
Query: 396 KDEVKRFKKL 405
+ +++ ++++
Sbjct: 406 QYDIELYQRI 415
Score = 136 (52.9 bits), Expect = 5.5e-39, Sum P(3) = 5.5e-39
Identities = 33/97 (34%), Positives = 54/97 (55%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 87 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYF-ALVLTPTRELAFQI 145
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
+ F A+ +G+ + VG + + +L K+P +
Sbjct: 146 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHI 182
Score = 128 (50.1 bits), Expect = 5.5e-39, Sum P(3) = 5.5e-39
Identities = 32/77 (41%), Positives = 45/77 (58%)
Query: 120 VLQELQSAVD--ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
V Q LQ A I++ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L
Sbjct: 170 VAQGLQLAKKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKIL 229
Query: 178 Q-LTRSDNENRFSDAST 193
+ L R FS T
Sbjct: 230 KVLPRERRTFLFSATMT 246
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 263 (97.6 bits), Expect = 7.9e-39, Sum P(3) = 7.9e-39
Identities = 64/208 (30%), Positives = 112/208 (53%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 282
M+ SAT+T + LA + L +P+ + P + + I ++ + + ALL
Sbjct: 399 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 458
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+ ++FT + + HR+ LL G +++ E G Q+ R + L+ F++ +I
Sbjct: 459 TRTFTDHVMLFTQTKKQAHRMHILLGLMG---LQVGELHGNLSQTQRLEALRRFKDEQID 515
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
+LV++D RG+D+EGV V+N+ P IK Y+HR GRTARAG+ GR +L+ +DE K
Sbjct: 516 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKML 575
Query: 403 KKLLQKADNDSCPIHS--IPSSLIESLR 428
K++++ A P+ + +P +I R
Sbjct: 576 KEIVKAA---KAPVKARILPQDVILKFR 600
Score = 144 (55.7 bits), Expect = 7.9e-39, Sum P(3) = 7.9e-39
Identities = 37/111 (33%), Positives = 58/111 (52%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLR 58
MG P+Q A I GL +D+C + TG+GKT ++ALP+++ L R R
Sbjct: 236 MGFKQPTPIQKAC----IPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTR 291
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
LV++PTR+L +QV V +A ++ LAVG + + + L P +
Sbjct: 292 VLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDI 342
Score = 120 (47.3 bits), Expect = 7.9e-39, Sum P(3) = 7.9e-39
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
L++A DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + ++++
Sbjct: 336 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 391
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 261 (96.9 bits), Expect = 8.9e-39, Sum P(3) = 8.9e-39
Identities = 63/208 (30%), Positives = 113/208 (54%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 282
M+ SAT+T + LA + L +P+ + P + + I ++ + + ALL
Sbjct: 365 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 424
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+ ++FT + + HR+ LL G L +++ E G Q+ R + L+ F++ +I
Sbjct: 425 MRTFTDHVMLFTQTKKQAHRMHILL---GLLGLQVGELHGNLSQTQRLEALRRFKDEQID 481
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
+LV++D RG+D+EGV V+N+ P +K Y+HR GRTARAG+ GR +L+ ++E K
Sbjct: 482 ILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKML 541
Query: 403 KKLLQKADNDSCPIHS--IPSSLIESLR 428
K++++ A P+ + +P +I R
Sbjct: 542 KEIVKAA---KAPVKARILPQDVILKFR 566
Score = 145 (56.1 bits), Expect = 8.9e-39, Sum P(3) = 8.9e-39
Identities = 37/111 (33%), Positives = 58/111 (52%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLR 58
MG P+Q A I GL +D+C + TG+GKT ++ALP+++ L R R
Sbjct: 202 MGFKQPTPIQKAC----IPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAAVTR 257
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
LV++PTR+L +QV V +A ++ LAVG + + + L P +
Sbjct: 258 VLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDI 308
Score = 120 (47.3 bits), Expect = 8.9e-39, Sum P(3) = 8.9e-39
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
L++A DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + ++++
Sbjct: 302 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 357
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 260 (96.6 bits), Expect = 1.6e-38, Sum P(3) = 1.6e-38
Identities = 63/208 (30%), Positives = 112/208 (53%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 282
M+ SAT+T + LA + L +P+ + P + + I ++ + + ALL
Sbjct: 368 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 427
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+ ++FT + + HR+ LL G +++ E G Q+ R + L+ F++ +I
Sbjct: 428 MRTFTDHVMLFTQTKKQAHRMHILLGLMG---LQVGELHGNLSQTQRLEALRRFKDEQID 484
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
+LV++D RG+D+EGV V+N+ P IK Y+HR GRTARAG+ GR +L+ ++E K
Sbjct: 485 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKML 544
Query: 403 KKLLQKADNDSCPIHS--IPSSLIESLR 428
K++++ A P+ + +P +I R
Sbjct: 545 KEIVKAA---KAPVKARILPQDVILKFR 569
Score = 144 (55.7 bits), Expect = 1.6e-38, Sum P(3) = 1.6e-38
Identities = 37/111 (33%), Positives = 58/111 (52%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLR 58
MG P+Q A I GL +D+C + TG+GKT ++ALP+++ L R R
Sbjct: 205 MGFKQPTPIQKAC----IPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTR 260
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
LV++PTR+L +QV V +A ++ LAVG + + + L P +
Sbjct: 261 VLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDI 311
Score = 120 (47.3 bits), Expect = 1.6e-38, Sum P(3) = 1.6e-38
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
L++A DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + ++++
Sbjct: 305 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 360
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 248 (92.4 bits), Expect = 1.9e-38, Sum P(3) = 1.9e-38
Identities = 66/219 (30%), Positives = 110/219 (50%)
Query: 210 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 269
++R K P + SAT+T +KL + L +P+ +Y+ + L ++
Sbjct: 245 LDRILKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSN-KYQTVDTLVQTLMVV 303
Query: 270 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 329
LK YL+ LL + I+FT + + RL L N L G Q+ R
Sbjct: 304 PGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNL---LEFSATALHGDLNQNQR 360
Query: 330 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 389
+L F+ GK +LV++D RG+D+ V+ VVNYD P K+YIHR GRTARAG+ G+
Sbjct: 361 MGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGK 420
Query: 390 CFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLR 428
+L+ + +++ ++ ++ P S+ ++I +LR
Sbjct: 421 SISLVSQYDLELILRI-EEVLGKKLPKESVDKNIILTLR 458
Score = 136 (52.9 bits), Expect = 1.9e-38, Sum P(3) = 1.9e-38
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
D ++L I++ATPGRLMDH+ T+GF+L L +LV+DE DRLL + L +L+
Sbjct: 191 DQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILK 250
Query: 179 LTRSDNENRFSDAST 193
+ + + ++T
Sbjct: 251 IIPTQERTTYLFSAT 265
Score = 130 (50.8 bits), Expect = 1.9e-38, Sum P(3) = 1.9e-38
Identities = 29/97 (29%), Positives = 55/97 (56%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ + I P L D+ + TGSGKT ++A+PI+ L + A ++ PTR+LA Q+
Sbjct: 107 IQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ-EPYYACILAPTRELAQQI 165
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
K+ F ++ +G+ VG ++ D+ +L+++P +
Sbjct: 166 KETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHI 202
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 260 (96.6 bits), Expect = 2.5e-38, Sum P(3) = 2.5e-38
Identities = 63/208 (30%), Positives = 112/208 (53%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 282
M+ SAT+T + LA + L +P+ + P + + I ++ + + ALL
Sbjct: 368 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALL 427
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+ ++FT + + HR+ LL G +++ E G Q+ R + L+ F++ +I
Sbjct: 428 TRTFTDHVMLFTQTKKQAHRMHILLGLMG---LQVGELHGNLSQTQRLEALRRFKDEQID 484
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
+LV++D RG+D+EGV V+N+ P IK Y+HR GRTARAG+ GR +L+ ++E K
Sbjct: 485 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKML 544
Query: 403 KKLLQKADNDSCPIHS--IPSSLIESLR 428
K++++ A P+ + +P +I R
Sbjct: 545 KEIVKAA---KAPVKARILPQDVILKFR 569
Score = 142 (55.0 bits), Expect = 2.5e-38, Sum P(3) = 2.5e-38
Identities = 37/111 (33%), Positives = 58/111 (52%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLR 58
MG P+Q A I GL +D+C + TG+GKT ++ALP+++ L R R
Sbjct: 205 MGFKQPTPIQKAC----IPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQSPVTR 260
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
LV++PTR+L +QV V +A ++ LAVG + + + L P +
Sbjct: 261 VLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAPDI 311
Score = 120 (47.3 bits), Expect = 2.5e-38, Sum P(3) = 2.5e-38
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
L++A DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + ++++
Sbjct: 305 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 360
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 260 (96.6 bits), Expect = 2.9e-38, Sum P(3) = 2.9e-38
Identities = 63/208 (30%), Positives = 112/208 (53%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 282
M+ SAT+T + LA + L +P+ + P + + I ++ + + ALL
Sbjct: 389 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALL 448
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+ ++FT + + HR+ LL G +++ E G Q+ R + L+ F++ +I
Sbjct: 449 TRTFTDHVMLFTQTKKQAHRMHILLGLMG---LQVGELHGNLSQTQRLEALRRFKDEQID 505
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
+LV++D RG+D+EGV V+N+ P IK Y+HR GRTARAG+ GR +L+ ++E K
Sbjct: 506 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKML 565
Query: 403 KKLLQKADNDSCPIHS--IPSSLIESLR 428
K++++ A P+ + +P +I R
Sbjct: 566 KEIVKAA---KAPVKARILPQDVILKFR 590
Score = 142 (55.0 bits), Expect = 2.9e-38, Sum P(3) = 2.9e-38
Identities = 37/111 (33%), Positives = 58/111 (52%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLR 58
MG P+Q A I GL +D+C + TG+GKT ++ALP+++ L R R
Sbjct: 226 MGFKQPTPIQKAC----IPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQSPVTR 281
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
LV++PTR+L +QV V +A ++ LAVG + + + L P +
Sbjct: 282 VLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAPDI 332
Score = 120 (47.3 bits), Expect = 2.9e-38, Sum P(3) = 2.9e-38
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
L++A DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + ++++
Sbjct: 326 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 381
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 237 (88.5 bits), Expect = 1.3e-37, Sum P(3) = 1.3e-37
Identities = 59/175 (33%), Positives = 92/175 (52%)
Query: 226 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 285
+ SAT++ L + L +P+ ++ ++Y+ L+S + K K LYLV LL
Sbjct: 225 LFSATMSTKVESLQRASLSNPVRVSVS-SKYQTVSTLQSSYICIPHKHKNLYLVYLLNEF 283
Query: 286 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 345
+ I+FT++V T R+ +L G I + G QS R L FR +LV
Sbjct: 284 AGQSAIIFTTTVHETQRVAFMLRALGFGAIPLH---GQLSQSARLGALGKFRSRSRDILV 340
Query: 346 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
++D RG+D+ V+ V N+D P KTYIHR GRTARAG+ G + + + +V+
Sbjct: 341 ATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDVE 395
Score = 139 (54.0 bits), Expect = 1.3e-37, Sum P(3) = 1.3e-37
Identities = 40/126 (31%), Positives = 64/126 (50%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MG + P+Q + I L RD+ + TGSGKT ++ALP++Q L A + L L
Sbjct: 64 MGYKAPTPIQ----SQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALME-APQTLFGL 118
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
V+ PTR+LA Q+ F + +G+ + VG + + L K+P + I P +
Sbjct: 119 VLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHI---IVATPGRL 175
Query: 121 LQELQS 126
L L++
Sbjct: 176 LDHLEN 181
Score = 130 (50.8 bits), Expect = 1.3e-37, Sum P(3) = 1.3e-37
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 130 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRF 188
I+VATPGRL+DH+ T+GF+L +L YL +DE DRLL + L +++ L R+ + F
Sbjct: 167 IIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTYLF 226
Query: 189 S 189
S
Sbjct: 227 S 227
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 233 (87.1 bits), Expect = 4.0e-37, Sum P(3) = 4.0e-37
Identities = 61/201 (30%), Positives = 102/201 (50%)
Query: 210 VERGFKDK--------PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 261
+E GF+D+ P + ++ SAT+ L QL L P+ + + +
Sbjct: 288 LEEGFQDELTEILSLIPKHKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKL 347
Query: 262 LESYKLICE-SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320
L+ + I + +LKP L LL+ + + +VF + E+ HRL +L G L +K+ E
Sbjct: 348 LQQFVRIRKRDQLKPALLYQLLKGVSS-RVVVFVARKETAHRLRIVL---GLLGLKVSEL 403
Query: 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 380
G Q R + +K F+ ++ VL+ +D RG+D+ + V+NYD P + Y+HR GR
Sbjct: 404 HGALTQEQRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGR 463
Query: 381 TARAGQLGRCFTLLHKDEVKR 401
TARAG+ G T + + +R
Sbjct: 464 TARAGRDGTSITFVGESSQER 484
Score = 143 (55.4 bits), Expect = 4.0e-37, Sum P(3) = 4.0e-37
Identities = 35/110 (31%), Positives = 61/110 (55%)
Query: 2 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
GI+ L F + +I L +D+ + TGSGKT +Y +PI++ L + + +
Sbjct: 144 GIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKVI 203
Query: 61 VVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIADEISELIKRPKL 109
++ PTR+LALQV + ++ V L++GLAVG ++ + +L RP +
Sbjct: 204 ILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDI 253
Score = 135 (52.6 bits), Expect = 4.0e-37, Sum P(3) = 4.0e-37
Identities = 25/58 (43%), Positives = 41/58 (70%)
Query: 122 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
++L++ DI++ATPGRL+DHI + F+++ + LV+DE DR+L E +Q L +L L
Sbjct: 245 EQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSL 302
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 233 (87.1 bits), Expect = 4.0e-37, Sum P(3) = 4.0e-37
Identities = 61/201 (30%), Positives = 102/201 (50%)
Query: 210 VERGFKDK--------PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 261
+E GF+D+ P + ++ SAT+ L QL L P+ + + +
Sbjct: 288 LEEGFQDELTEILSLIPKHKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKL 347
Query: 262 LESYKLICE-SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320
L+ + I + +LKP L LL+ + + +VF + E+ HRL +L G L +K+ E
Sbjct: 348 LQQFVRIRKRDQLKPALLYQLLKGVSS-RVVVFVARKETAHRLRIVL---GLLGLKVSEL 403
Query: 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 380
G Q R + +K F+ ++ VL+ +D RG+D+ + V+NYD P + Y+HR GR
Sbjct: 404 HGALTQEQRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGR 463
Query: 381 TARAGQLGRCFTLLHKDEVKR 401
TARAG+ G T + + +R
Sbjct: 464 TARAGRDGTSITFVGESSQER 484
Score = 143 (55.4 bits), Expect = 4.0e-37, Sum P(3) = 4.0e-37
Identities = 35/110 (31%), Positives = 61/110 (55%)
Query: 2 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
GI+ L F + +I L +D+ + TGSGKT +Y +PI++ L + + +
Sbjct: 144 GIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKVI 203
Query: 61 VVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIADEISELIKRPKL 109
++ PTR+LALQV + ++ V L++GLAVG ++ + +L RP +
Sbjct: 204 ILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDI 253
Score = 135 (52.6 bits), Expect = 4.0e-37, Sum P(3) = 4.0e-37
Identities = 25/58 (43%), Positives = 41/58 (70%)
Query: 122 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
++L++ DI++ATPGRL+DHI + F+++ + LV+DE DR+L E +Q L +L L
Sbjct: 245 EQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSL 302
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 254 (94.5 bits), Expect = 9.5e-37, Sum P(3) = 9.5e-37
Identities = 62/206 (30%), Positives = 108/206 (52%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 282
M+ SAT+T++ LA + L +P + P + + I ++ + + ALL
Sbjct: 361 MLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALL 420
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+ ++FT + + HR+ LL G +++ E G Q+ R + L+ F++ +I
Sbjct: 421 TRTFPDHVMLFTQTKKQAHRMHILLGLMG---LRVGELHGNLSQAQRLEALRRFKDEQID 477
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
+LV++D RG+D+EGV V+N+ P K Y+HR GRTARAG+ GR +L+ ++E K
Sbjct: 478 ILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKML 537
Query: 403 KKLLQKADNDSCPIHSIPSSLIESLR 428
K+++ KA +P +I R
Sbjct: 538 KEIV-KAAKTPVKARILPQDVILKFR 562
Score = 133 (51.9 bits), Expect = 9.5e-37, Sum P(3) = 9.5e-37
Identities = 35/111 (31%), Positives = 57/111 (51%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLR 58
+G P+Q A I GL +D+C + TG+GKT ++ LP+++ L R R
Sbjct: 198 LGFKQPTPIQKAC----IPVGLLGKDICACAATGTGKTAAFILPVLERLIYKPRQAPITR 253
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
LV++PTR+L +QV V +A ++ LAVG + + + L P +
Sbjct: 254 VLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALRSGPDI 304
Score = 121 (47.7 bits), Expect = 9.5e-37, Sum P(3) = 9.5e-37
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL-TRS 182
L+S DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + +++L +R
Sbjct: 298 LRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSRH 357
Query: 183 DNENRFSDAST 193
FS T
Sbjct: 358 RQTMLFSATMT 368
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 217 (81.4 bits), Expect = 3.6e-36, Sum P(3) = 3.6e-36
Identities = 55/182 (30%), Positives = 93/182 (51%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL--ESYKLICESKLKPLYLVALL 282
++ SAT+ L L L P+ + + K +L E ++ LKP L L+
Sbjct: 413 LLFSATMNSKIKSLVSLSLKKPVRIMIDPPK-KAATKLTQEFVRIRKRDHLKPALLFNLI 471
Query: 283 QSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 339
+ L G+++ +VF + E+ HRL ++ G L + + E G Q R ++ F+
Sbjct: 472 RKLDPTGQKRIVVFVARKETAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVNKFKNL 528
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
++ VL+ +D +RG+D+ + V+NYD P + Y+HR GRTARAG+ GR T + +
Sbjct: 529 EVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQ 588
Query: 400 KR 401
R
Sbjct: 589 DR 590
Score = 157 (60.3 bits), Expect = 3.6e-36, Sum P(3) = 3.6e-36
Identities = 42/112 (37%), Positives = 66/112 (58%)
Query: 2 GISSLFPVQVAVWQE-TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL--R 58
G++SL V+ + Q TI L +D+ + TGSGKT ++ +PI++ L + + R
Sbjct: 245 GLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTR 304
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKL 109
+V+LPTR+LA+QV DV IA V G++ GLAVG ++ + L RP +
Sbjct: 305 VIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDI 356
Score = 135 (52.6 bits), Expect = 3.6e-36, Sum P(3) = 3.6e-36
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 122 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 181
Q L+S DI++ATPGR +DHI + F ++ + LV+DE DR+L E +Q L ++ L
Sbjct: 348 QMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLP 407
Query: 182 SDNENRFSDAS 192
S+ +N A+
Sbjct: 408 SNRQNLLFSAT 418
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 254 (94.5 bits), Expect = 8.2e-36, Sum P(3) = 8.2e-36
Identities = 62/206 (30%), Positives = 108/206 (52%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 282
M+ SAT+T++ LA + L +P + P + + I ++ + + ALL
Sbjct: 362 MLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALL 421
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+ ++FT + + HR+ LL G +++ E G Q+ R + L+ F++ +I
Sbjct: 422 TRTFPDHVMLFTQTKKQAHRMHILLGLMG---LRVGELHGNLSQAQRLEALRRFKDEQID 478
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
+LV++D RG+D+EGV V+N+ P K Y+HR GRTARAG+ GR +L+ ++E K
Sbjct: 479 ILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKML 538
Query: 403 KKLLQKADNDSCPIHSIPSSLIESLR 428
K+++ KA +P +I R
Sbjct: 539 KEIV-KAAKTPVKARILPQDVILKFR 563
Score = 124 (48.7 bits), Expect = 8.2e-36, Sum P(3) = 8.2e-36
Identities = 35/112 (31%), Positives = 57/112 (50%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGS-GKTLSYALPIVQTL--SNRAVRCL 57
+G P+Q A I GL +D+C + TG+ GKT ++ LP+++ L R
Sbjct: 198 LGFKQPTPIQKAC----IPVGLLGKDICACAATGTVGKTAAFILPVLERLIYKPRQAPIT 253
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
R LV++PTR+L +QV V +A ++ LAVG + + + L P +
Sbjct: 254 RVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALRSGPDI 305
Score = 121 (47.7 bits), Expect = 8.2e-36, Sum P(3) = 8.2e-36
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL-TRS 182
L+S DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + +++L +R
Sbjct: 299 LRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSRH 358
Query: 183 DNENRFSDAST 193
FS T
Sbjct: 359 RQTMLFSATMT 369
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 239 (89.2 bits), Expect = 3.9e-35, Sum P(3) = 3.9e-35
Identities = 57/179 (31%), Positives = 97/179 (54%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SATLT +L L + P F T + E+L+ L+ K+K YLV L+Q+
Sbjct: 183 LLFSATLTDTLKELQGLATNQPFFWEAQAT-VRTVEQLDQRYLLVPEKVKDAYLVHLVQT 241
Query: 285 LGE--EKC--IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 340
+ E C I+FT++ ++ LC +L F + + + +Q R L F+
Sbjct: 242 FQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHS---MMKQKERFAALARFKSST 298
Query: 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
++L+++D +RG+D+ V V+N++ P K YIHR GRTARAG+ G+ TL+ + ++
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 357
Score = 132 (51.5 bits), Expect = 3.9e-35, Sum P(3) = 3.9e-35
Identities = 37/109 (33%), Positives = 57/109 (52%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRCLR 58
+G+ PVQ+ P + E RD C+ + TGSGKT ++ LPI+Q LS
Sbjct: 20 LGLKQPTPVQLGCI-----PAILEGRD-CLGCAKTGSGKTAAFVLPILQKLSEDPYGIF- 72
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 107
LV+ PTR+LA Q+ + F + +GL + VG + + EL ++P
Sbjct: 73 CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRKP 121
Score = 112 (44.5 bits), Expect = 3.9e-35, Sum P(3) = 3.9e-35
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 123 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA---YQAWLPTVL 177
EL +++ATPGRL DH+ ++ F ++ + +LV+DE DRLL + + A L T+L
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETIL 173
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 237 (88.5 bits), Expect = 2.3e-34, Sum P(3) = 2.3e-34
Identities = 57/179 (31%), Positives = 97/179 (54%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SATLT +L L + P F T + E+L+ L+ K+K YLV L+Q+
Sbjct: 183 LLFSATLTDTLKELQGLATNEPFFWEAQAT-VRTVEQLDQRYLLVPEKVKDAYLVHLVQT 241
Query: 285 LGE--EKC--IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 340
+ E C I+FT++ ++ LC +L F + + + +Q R L F+
Sbjct: 242 FQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHS---MMKQKERFAALAKFKSSI 298
Query: 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
++L+++D +RG+D+ V V+N++ P K YIHR GRTARAG+ G+ TL+ + ++
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 357
Score = 131 (51.2 bits), Expect = 2.3e-34, Sum P(3) = 2.3e-34
Identities = 37/109 (33%), Positives = 57/109 (52%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRCLR 58
+G+ PVQ+ P + E RD C+ + TGSGKT ++ LPI+Q LS
Sbjct: 20 LGLKQPTPVQLGCI-----PAILEGRD-CLGCAKTGSGKTAAFVLPILQKLSEDPYGIF- 72
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 107
LV+ PTR+LA Q+ + F + +GL + VG + + EL ++P
Sbjct: 73 CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKP 121
Score = 108 (43.1 bits), Expect = 2.3e-34, Sum P(3) = 2.3e-34
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 123 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 167
EL +++ATPGRL DH+ ++ F ++ + +LV+DE DRLL +
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQ 160
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 236 (88.1 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
Identities = 55/179 (30%), Positives = 96/179 (53%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SATLT +L L + P F + + E+L+ L+ K+K YLV L+Q+
Sbjct: 183 LLFSATLTDTLRELQSLATNQPFFWEA-QAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQN 241
Query: 285 LGEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 340
+E I+FT++ ++ LC +L F + + + +Q R L F+
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHS---MMKQKERFAALAKFKSSI 298
Query: 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
++L+++D +RG+D+ V V+N++ P K YIHR GRTARAG+ G+ TL+ + ++
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 357
Score = 131 (51.2 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
Identities = 37/109 (33%), Positives = 57/109 (52%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRCLR 58
+G+ PVQ+ P + E RD C+ + TGSGKT ++ LPI+Q LS
Sbjct: 20 LGLKQPTPVQLGCI-----PAILEGRD-CLGCAKTGSGKTAAFVLPILQKLSEDPYGIF- 72
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 107
LV+ PTR+LA Q+ + F + +GL + VG + + EL ++P
Sbjct: 73 CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKP 121
Score = 109 (43.4 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 123 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 167
EL +++ATPGRL DH+ ++ F+++ + +LV+DE DRLL +
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQ 160
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 215 (80.7 bits), Expect = 4.1e-34, Sum P(3) = 4.1e-34
Identities = 54/179 (30%), Positives = 92/179 (51%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SATLT N+L L ++ P F + E + Y L+ E+ +K YLV L+Q+
Sbjct: 183 LLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEA-VKDAYLVHLIQT 241
Query: 285 LGEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 340
+E I+FT + + L +L F + + + +Q R L F+
Sbjct: 242 FQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHS---MMKQRQRFAALAKFKSSI 298
Query: 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
++L+++D RG+D+ V V+N++ P K YIHR GRTARAG+ G T++ + ++
Sbjct: 299 FKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDI 357
Score = 140 (54.3 bits), Expect = 4.1e-34, Sum P(3) = 4.1e-34
Identities = 39/108 (36%), Positives = 58/108 (53%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MG+S PVQ + I P L RD C+ + TGSGKT ++ LP++Q LS
Sbjct: 20 MGLSRPTPVQASC----IPPILQGRD-CLGCAKTGSGKTAAFVLPVLQVLSEDPYGIF-C 73
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 107
LV+ PTR+LA Q+ + F + +GL + VG + + EL ++P
Sbjct: 74 LVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKP 121
Score = 117 (46.2 bits), Expect = 4.1e-34, Sum P(3) = 4.1e-34
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 123 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQL 179
EL +++ATPGRL DH+ ++ F+L+ L +LV+DE DRLL + + A L +L+
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEA 175
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTI 205
+ + A+ L LK++
Sbjct: 176 VPARRQTLLFSAT--LTDTLNELKSL 199
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 234 (87.4 bits), Expect = 5.1e-34, Sum P(3) = 5.1e-34
Identities = 55/179 (30%), Positives = 96/179 (53%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SATLT +L L + P F + + E+L+ L+ K+K YLV L+Q+
Sbjct: 183 LLFSATLTDTLKELQGLATNQPFFWEA-QAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQN 241
Query: 285 LGEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 340
+E I+FT++ ++ LC +L F + + + +Q R L F+
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHS---MMKQKERFAALAKFKSSI 298
Query: 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
++L+++D +RG+D+ V V+N++ P K YIHR GRTARAG+ G+ TL+ + ++
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 357
Score = 131 (51.2 bits), Expect = 5.1e-34, Sum P(3) = 5.1e-34
Identities = 37/109 (33%), Positives = 57/109 (52%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRCLR 58
+G+ PVQ+ P + E RD C+ + TGSGKT ++ LPI+Q LS
Sbjct: 20 LGLKQPTPVQLGCI-----PAILEGRD-CLGCAKTGSGKTAAFVLPILQKLSEDPYGIF- 72
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 107
LV+ PTR+LA Q+ + F + +GL + VG + + EL ++P
Sbjct: 73 CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKP 121
Score = 109 (43.4 bits), Expect = 5.1e-34, Sum P(3) = 5.1e-34
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 123 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 167
EL +++ATPGRL DH+ ++ F+++ + +LV+DE DRLL +
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQ 160
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 230 (86.0 bits), Expect = 1.6e-33, Sum P(3) = 1.6e-33
Identities = 55/179 (30%), Positives = 94/179 (52%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SATLT +L L + P F + E+L+ L+ K+K YLV L+Q
Sbjct: 183 LLFSATLTDTLRELQGLATNQPFFWEA-QAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQR 241
Query: 285 LGEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 340
+E I+FT++ ++ LC +L F + + + +Q R L F+
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHS---MMKQKERFAALAKFKSSI 298
Query: 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
++L+++D +RG+D+ V V+N++ P K YIHR GRTARAG+ G+ TL+ + ++
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 357
Score = 131 (51.2 bits), Expect = 1.6e-33, Sum P(3) = 1.6e-33
Identities = 37/109 (33%), Positives = 57/109 (52%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRCLR 58
+G+ PVQ+ P + E RD C+ + TGSGKT ++ LPI+Q LS
Sbjct: 20 LGLKQPTPVQLGCI-----PAILEGRD-CLGCAKTGSGKTAAFVLPILQKLSEDPYGIF- 72
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 107
LV+ PTR+LA Q+ + F + +GL + VG + + EL ++P
Sbjct: 73 CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKP 121
Score = 109 (43.4 bits), Expect = 1.6e-33, Sum P(3) = 1.6e-33
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 123 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 167
EL +++ATPGRL DH+ ++ F+++ + +LV+DE DRLL +
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQ 160
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 215 (80.7 bits), Expect = 2.0e-33, Sum P(3) = 2.0e-33
Identities = 54/179 (30%), Positives = 92/179 (51%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SATLT N+L L ++ P F + E + Y L+ E+ +K YLV L+Q+
Sbjct: 186 LLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEA-VKDAYLVHLIQT 244
Query: 285 LGEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 340
+E I+FT + + L +L F + + + +Q R L F+
Sbjct: 245 FQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHS---MMKQRQRFAALAKFKSSI 301
Query: 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
++L+++D RG+D+ V V+N++ P K YIHR GRTARAG+ G T++ + ++
Sbjct: 302 FKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDI 360
Score = 140 (54.3 bits), Expect = 2.0e-33, Sum P(3) = 2.0e-33
Identities = 39/108 (36%), Positives = 58/108 (53%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MG+S PVQ + I P L RD C+ + TGSGKT ++ LP++Q LS
Sbjct: 23 MGLSRPTPVQASC----IPPILQGRD-CLGCAKTGSGKTAAFVLPVLQVLSEDPYGIF-C 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 107
LV+ PTR+LA Q+ + F + +GL + VG + + EL ++P
Sbjct: 77 LVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKP 124
Score = 117 (46.2 bits), Expect = 2.0e-33, Sum P(3) = 2.0e-33
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 123 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQL 179
EL +++ATPGRL DH+ ++ F+L+ L +LV+DE DRLL + + A L +L+
Sbjct: 119 ELSRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEA 178
Query: 180 TRSDNENRFSDASTFLPSAFGSLKTI 205
+ + A+ L LK++
Sbjct: 179 VPARRQTLLFSAT--LTDTLNELKSL 202
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 278 (102.9 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 67/190 (35%), Positives = 105/190 (55%)
Query: 217 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 275
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y L SK K
Sbjct: 193 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYLFIPSKFKD 251
Query: 276 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 335
YLV +L L ++F S+ +T R LL + G I + G QS R +L
Sbjct: 252 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQSKRLGSLNK 308
Query: 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395
F+ +L+++D +RG+D+ V+ VVN+D P + K YIHR GRTARAG+ G+ T +
Sbjct: 309 FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 368
Query: 396 KDEVKRFKKL 405
+ +V+ F+++
Sbjct: 369 QYDVELFQRI 378
Score = 141 (54.7 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 36/102 (35%), Positives = 56/102 (54%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
LA Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 104 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHI 145
Score = 139 (54.0 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 56/182 (30%), Positives = 86/182 (47%)
Query: 130 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 189
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 200
Query: 190 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 249
TFL SA + K +++ ++R P VK +S+ Q KL Q L P
Sbjct: 201 ---TFLFSATMT-KKVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYLFIPSKF 249
Query: 250 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 308
Y L E S+ + C + LL++LG I + + RL +L N
Sbjct: 250 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT-AIPLHGQMSQSKRLGSL-N 307
Query: 309 HF 310
F
Sbjct: 308 KF 309
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 278 (102.9 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 67/190 (35%), Positives = 105/190 (55%)
Query: 217 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 275
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y L SK K
Sbjct: 193 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYLFIPSKFKD 251
Query: 276 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 335
YLV +L L ++F S+ +T R LL + G I + G QS R +L
Sbjct: 252 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQSKRLGSLNK 308
Query: 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395
F+ +L+++D +RG+D+ V+ VVN+D P + K YIHR GRTARAG+ G+ T +
Sbjct: 309 FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 368
Query: 396 KDEVKRFKKL 405
+ +V+ F+++
Sbjct: 369 QYDVELFQRI 378
Score = 141 (54.7 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 36/102 (35%), Positives = 56/102 (54%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
LA Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 104 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHI 145
Score = 139 (54.0 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 56/182 (30%), Positives = 86/182 (47%)
Query: 130 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 189
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 200
Query: 190 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 249
TFL SA + K +++ ++R P VK +S+ Q KL Q L P
Sbjct: 201 ---TFLFSATMT-KKVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYLFIPSKF 249
Query: 250 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 308
Y L E S+ + C + LL++LG I + + RL +L N
Sbjct: 250 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT-AIPLHGQMSQSKRLGSL-N 307
Query: 309 HF 310
F
Sbjct: 308 KF 309
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 278 (102.9 bits), Expect = 2.7e-33, Sum P(2) = 2.7e-33
Identities = 67/190 (35%), Positives = 105/190 (55%)
Query: 217 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 275
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y L SK K
Sbjct: 195 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYLFIPSKFKD 253
Query: 276 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 335
YLV +L L ++F S+ +T R LL + G I + G QS R +L
Sbjct: 254 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQSKRLGSLNK 310
Query: 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395
F+ +L+++D +RG+D+ V+ VVN+D P + K YIHR GRTARAG+ G+ T +
Sbjct: 311 FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 370
Query: 396 KDEVKRFKKL 405
+ +V+ F+++
Sbjct: 371 QYDVELFQRI 380
Score = 141 (54.7 bits), Expect = 2.7e-33, Sum P(2) = 2.7e-33
Identities = 36/102 (35%), Positives = 56/102 (54%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 49 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 105
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
LA Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 106 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHI 147
Score = 139 (54.0 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 56/182 (30%), Positives = 86/182 (47%)
Query: 130 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 189
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 147 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 202
Query: 190 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 249
TFL SA + K +++ ++R P VK +S+ Q KL Q L P
Sbjct: 203 ---TFLFSATMT-KKVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYLFIPSKF 251
Query: 250 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 308
Y L E S+ + C + LL++LG I + + RL +L N
Sbjct: 252 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT-AIPLHGQMSQSKRLGSL-N 309
Query: 309 HF 310
F
Sbjct: 310 KF 311
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 271 (100.5 bits), Expect = 5.2e-33, Sum P(2) = 5.2e-33
Identities = 64/190 (33%), Positives = 105/190 (55%)
Query: 217 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 275
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y + SK K
Sbjct: 194 KVIPRDRKTFLFSATMTKQVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYIFIPSKFKD 252
Query: 276 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 335
YLV +L L ++F S+ +T R LL + G I + G Q+ R +L
Sbjct: 253 SYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQNKRLGSLNK 309
Query: 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395
F+ +L+++D +RG+D+ V+ V+N+D P + K YIHR GRTARAG+ G+ T +
Sbjct: 310 FKAKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVT 369
Query: 396 KDEVKRFKKL 405
+ +V+ F+++
Sbjct: 370 QYDVELFQRI 379
Score = 147 (56.8 bits), Expect = 5.2e-33, Sum P(2) = 5.2e-33
Identities = 38/102 (37%), Positives = 58/102 (56%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ V E I L RD+ + TGSGKT ++ALPI+Q L + R L ALV+ PTR+
Sbjct: 48 PTKIQV--EAIPVALQGRDIIGLAETGSGKTGAFALPILQALLDAPQR-LFALVLTPTRE 104
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
LA Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 105 LAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPHI 146
Score = 135 (52.6 bits), Expect = 8.4e-17, Sum P(2) = 8.4e-17
Identities = 48/158 (30%), Positives = 77/158 (48%)
Query: 130 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 189
I++ATPGRL+DH+ T+GF L L +LV+DE DR+L ++ + +L++ D +
Sbjct: 146 IIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRK---- 201
Query: 190 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 249
TFL SA + K +++ ++R P VK +S+ Q KL Q + P
Sbjct: 202 ---TFLFSATMT-KQVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYIFIPSKF 250
Query: 250 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLG 286
Y L E S+ + C + LL++LG
Sbjct: 251 KDSYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLG 288
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 278 (102.9 bits), Expect = 6.0e-33, Sum P(2) = 6.0e-33
Identities = 67/190 (35%), Positives = 105/190 (55%)
Query: 217 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 275
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y L SK K
Sbjct: 219 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYLFIPSKFKD 277
Query: 276 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 335
YLV +L L ++F S+ +T R LL + G I + G QS R +L
Sbjct: 278 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQSKRLGSLNK 334
Query: 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395
F+ +L+++D +RG+D+ V+ VVN+D P + K YIHR GRTARAG+ G+ T +
Sbjct: 335 FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 394
Query: 396 KDEVKRFKKL 405
+ +V+ F+++
Sbjct: 395 QYDVELFQRI 404
Score = 140 (54.3 bits), Expect = 6.0e-33, Sum P(2) = 6.0e-33
Identities = 36/102 (35%), Positives = 56/102 (54%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 73 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 129
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
LA Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 130 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHI 171
Score = 139 (54.0 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 56/182 (30%), Positives = 86/182 (47%)
Query: 130 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 189
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 171 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 226
Query: 190 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 249
TFL SA + K +++ ++R P VK +S+ Q KL Q L P
Sbjct: 227 ---TFLFSATMT-KKVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYLFIPSKF 275
Query: 250 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 308
Y L E S+ + C + LL++LG I + + RL +L N
Sbjct: 276 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT-AIPLHGQMSQSKRLGSL-N 333
Query: 309 HF 310
F
Sbjct: 334 KF 335
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 276 (102.2 bits), Expect = 6.0e-33, Sum P(2) = 6.0e-33
Identities = 66/190 (34%), Positives = 105/190 (55%)
Query: 217 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 275
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y + SK K
Sbjct: 193 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYIFIPSKFKD 251
Query: 276 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 335
YLV +L L ++F S+ +T R LL + G I + G QS R +L
Sbjct: 252 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQSKRLGSLNK 308
Query: 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395
F+ +L+++D +RG+D+ V+ VVN+D P + K YIHR GRTARAG+ G+ T +
Sbjct: 309 FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 368
Query: 396 KDEVKRFKKL 405
+ +V+ F+++
Sbjct: 369 QYDVELFQRI 378
Score = 140 (54.3 bits), Expect = 6.0e-33, Sum P(2) = 6.0e-33
Identities = 36/102 (35%), Positives = 56/102 (54%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
LA Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHI 145
Score = 138 (53.6 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 55/182 (30%), Positives = 86/182 (47%)
Query: 130 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 189
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 200
Query: 190 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 249
TFL SA + K +++ ++R P VK +S+ Q KL Q + P
Sbjct: 201 ---TFLFSATMT-KKVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYIFIPSKF 249
Query: 250 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 308
Y L E S+ + C + LL++LG I + + RL +L N
Sbjct: 250 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT-AIPLHGQMSQSKRLGSL-N 307
Query: 309 HF 310
F
Sbjct: 308 KF 309
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 257 (95.5 bits), Expect = 8.2e-33, Sum P(2) = 8.2e-33
Identities = 64/187 (34%), Positives = 104/187 (55%)
Query: 226 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL-ESYKLICESKLKPLYLVALLQS 284
+ SAT+T+ KL + L +P+ + ++Y + L + Y+ + +K K YLV +L
Sbjct: 200 LFSATMTKKVRKLQRACLRNPVKIEAA-SKYSTVDTLKQQYRFVA-AKYKDCYLVYILSE 257
Query: 285 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 344
+ E ++FT + + T L +L G I I SG QS R L F+ G+ +L
Sbjct: 258 MPESTSMIFTRTCDGTRFLALVLRSLGFRAIPI---SGQMTQSKRLGALNKFKAGECNIL 314
Query: 345 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---R 401
V +D +RG+D+ V+ V+NYD P K YIHR GRTARAG+ G +L+++ E++ +
Sbjct: 315 VCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQ 374
Query: 402 FKKLLQK 408
+KL+ K
Sbjct: 375 IEKLIGK 381
Score = 163 (62.4 bits), Expect = 8.2e-33, Sum P(2) = 8.2e-33
Identities = 53/155 (34%), Positives = 82/155 (52%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI-APAV 83
+D+ + TGSGKT ++A+PI+Q L P D A FA + +P
Sbjct: 47 KDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRP--DPAF-----FACVLSPTR 99
Query: 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 143
L++ +A ++ +IS ++ L GI D L ++VATPGRL DH++
Sbjct: 100 ELAIQIAEQFEALGADIS--LRCAVLVGGI--DRMQQTIALGKRPHVIVATPGRLWDHMS 155
Query: 144 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
T+GF+L+ L YLV+DE DRLL E ++ L +L+
Sbjct: 156 DTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILE 190
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 220 (82.5 bits), Expect = 2.8e-32, Sum P(3) = 2.8e-32
Identities = 54/179 (30%), Positives = 94/179 (52%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SATLT +L + ++ P F ++ + E L+ ++ K+K YLV L+Q+
Sbjct: 183 LLFSATLTDTLQQLQSIAMNRPFFWEH-KSDVQTVEELDQRFILTPEKVKDAYLVHLIQT 241
Query: 285 LGEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 340
+E I+FT++ +S L +L F I + + +Q R L F+
Sbjct: 242 FQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHS---MMKQRQRFANLAKFKSNV 298
Query: 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
++L+++D RG+D+ V V+N++ P K YIHR GRTARAG+ G TL+ + ++
Sbjct: 299 FKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDI 357
Score = 134 (52.2 bits), Expect = 2.8e-32, Sum P(3) = 2.8e-32
Identities = 40/109 (36%), Positives = 58/109 (53%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRCLR 58
MGIS P V QE P + + RD C+ + TGSGKT ++ LP++Q LS
Sbjct: 20 MGISR--PTAV---QEKCIPAILDGRD-CMGCAKTGSGKTAAFVLPVLQKLSEDPYGVF- 72
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 107
LV+ PTR+LA Q+ + F + +GL + VG + + EL K+P
Sbjct: 73 CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSKKP 121
Score = 105 (42.0 bits), Expect = 2.8e-32, Sum P(3) = 2.8e-32
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 123 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 167
EL ++VATPGRL DHI ++ L + +L++DE DRLL +
Sbjct: 116 ELSKKPHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQ 160
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 227 (85.0 bits), Expect = 3.0e-32, Sum P(3) = 3.0e-32
Identities = 56/179 (31%), Positives = 95/179 (53%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SAT+T++ KL + L+ P F+ ++Y + L+ + + K YLV +L+
Sbjct: 184 LLFSATMTKNLTKLDSIALNKP-FIFEDNSKYDTVDTLKQEYIYMPAPTKDCYLVYILKK 242
Query: 285 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 344
IVF ++ + + +LN + + +S L ++S R LK F+ GK++VL
Sbjct: 243 HEGSSAIVFVNNCYAVEAVKGMLNKLDIPSVSL--HSFLDQKS-RLAALKTFKSGKVKVL 299
Query: 345 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 403
V++D +RG+D+ V V+NY K YIHR GRTAR G+ GR + + +V K
Sbjct: 300 VATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSLIK 358
Score = 130 (50.8 bits), Expect = 3.0e-32, Sum P(3) = 3.0e-32
Identities = 32/93 (34%), Positives = 52/93 (55%)
Query: 17 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 76
TI L RD+ ++ TGSGKT S+A+PI+ LS A+++ PTR+LA+Q+ + F
Sbjct: 34 TIPEILKGRDIIASAKTGSGKTASFAIPILNQLSEDPYGVF-AVILTPTRELAVQIGEQF 92
Query: 77 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
AI + ++ + +G + L KRP +
Sbjct: 93 NAIGAPMNVNCSVVIGGIDNVTQALILDKRPHI 125
Score = 103 (41.3 bits), Expect = 3.0e-32, Sum P(3) = 3.0e-32
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 130 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
I+VATPGRL H+N L+ +LV+DE DRLL E ++ + ++L+
Sbjct: 125 IIVATPGRLASHLNNGLKIALKFCKFLVLDEADRLLGEDFELEIASILE 173
Score = 44 (20.5 bits), Expect = 6.5e-12, Sum P(3) = 6.5e-12
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 399 VKRFKKLLQKADNDSCPIHSI--PSSLIESLRPVYKSGDV 436
V+ K +L K D S +HS S + +L+ +KSG V
Sbjct: 258 VEAVKGMLNKLDIPSVSLHSFLDQKSRLAALK-TFKSGKV 296
>UNIPROTKB|I3LQ10 [details] [associations]
symbol:LOC100626268 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 Ensembl:ENSSSCT00000028964 OMA:RYLVALC
Uniprot:I3LQ10
Length = 684
Score = 235 (87.8 bits), Expect = 3.9e-32, Sum P(2) = 3.9e-32
Identities = 60/182 (32%), Positives = 98/182 (53%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 282
M+ SAT+T + LA + L +P+ + P + + I ++ + + ALL
Sbjct: 397 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 456
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS-KTLKAFREGKI 341
+ ++FT + + HR+ LL G +++ E G Q+ R + L F++ +I
Sbjct: 457 MRTFTDHVMLFTQTKKQAHRMHILLGLMG---LQVGELHGNLSQTQRXLEALWRFKDEQI 513
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
+LV++D RG+D+EGV V+N+ P IK Y+HR GRTARAG+ GR +LL K+ VK
Sbjct: 514 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLL-KEIVKA 572
Query: 402 FK 403
K
Sbjct: 573 AK 574
Score = 191 (72.3 bits), Expect = 3.9e-32, Sum P(2) = 3.9e-32
Identities = 57/176 (32%), Positives = 93/176 (52%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLRALVVLP 64
F + + I GL +D+C + TG+GKT ++ALP+++ L R R LV++P
Sbjct: 231 FKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVP 290
Query: 65 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 124
TR+L +QV V +A QSS+ + I L AG D + L
Sbjct: 291 TRELGIQVHSVTKQLA------------QSSLC--VITTISG--LFAG-GLDVKSQEAAL 333
Query: 125 QSAV-DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
++A DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + ++++
Sbjct: 334 RAAXPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 389
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 239 (89.2 bits), Expect = 1.2e-31, Sum P(3) = 1.2e-31
Identities = 63/204 (30%), Positives = 106/204 (51%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLT-TGETRYKLPERLESYKLICESKLKPLYLVALLQ 283
M+ SAT+ L + L++PL + G++ KL + + Y + +S + + L++
Sbjct: 297 MMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVK 356
Query: 284 SLGEE-KCIVFTSSVESTHRLCTLLNHFGELR-IKIKEYSGLQRQSVRSKTLKAFREGKI 341
G+ KCIVFT + RL FG + K + G Q+ R +TL FR+G
Sbjct: 357 EHGKGGKCIVFTQTKRDADRLA-----FGLAKSYKCEALHGDISQAQRERTLAGFRDGNF 411
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
+LV++D RG+DV V+ V++Y+ P +T++HR GRT RAG+ G L+H + R
Sbjct: 412 SILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAI-LIHGQDQTR 470
Query: 402 FKKLLQKADNDSCPIHSIPSSLIE 425
K+++K + +PS +E
Sbjct: 471 AVKMIEKEVGSR--FNELPSIAVE 492
Score = 125 (49.1 bits), Expect = 1.2e-31, Sum P(3) = 1.2e-31
Identities = 37/107 (34%), Positives = 59/107 (55%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA-- 59
GI LFP+Q AV + P + RD+ + TG+GKTL++ +PI+ + + R
Sbjct: 135 GIEKLFPIQKAVLE----PAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKN 190
Query: 60 ---LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
LV+ PTR+LA QV+ F AP++ ++ L G + I ++ EL
Sbjct: 191 PQCLVLAPTRELARQVEKEFRESAPSLD-TICL-YGGTPIGQQMREL 235
Score = 93 (37.8 bits), Expect = 1.2e-31, Sum P(3) = 1.2e-31
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 121 LQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
++EL +D+ V TPGR++D + RG L + ++V+DE D++L+ + + +LQ
Sbjct: 232 MRELNYGIDVAVGTPGRIIDLMK--RGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQK 289
Query: 180 TRSDNENRFSDASTFLPSAFGSL 202
+ ++ A+ +PS SL
Sbjct: 290 LPAKRQSMMFSAT--MPSWIRSL 310
>CGD|CAL0001062 [details] [associations]
symbol:orf19.3704 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001062 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AACQ01000217 EMBL:AACQ01000216 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_711043.1 RefSeq:XP_711056.1 ProteinModelPortal:Q59MW2
STRING:Q59MW2 GeneID:3647328 GeneID:3647350 KEGG:cal:CaO19.11188
KEGG:cal:CaO19.3704 KO:K14807 Uniprot:Q59MW2
Length = 606
Score = 345 (126.5 bits), Expect = 8.4e-31, P = 8.4e-31
Identities = 98/296 (33%), Positives = 156/296 (52%)
Query: 125 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
+S DI+V+TPGRL++H+ L L YL++DE DRLL +++Q W VL L + D+
Sbjct: 298 KSVPDIIVSTPGRLVEHL-LNDSINLSSLQYLIIDEADRLLNQSFQNW-SNVL-LDKIDS 354
Query: 185 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244
+ ++ + + V+ K+V SATLT D KL+ L +
Sbjct: 355 QINIAE--------------VWKLSVQ------------KLVFSATLTTDAGKLSSLKFY 388
Query: 245 HPLFLTTGETR------YKLPERLESYKL---ICESKLKPLYLVALLQSLGE-EKCIVFT 294
+P + +++ + +P L +K+ + ++ LKPL L L S + ++FT
Sbjct: 389 NPRLIIVNDSKQLVNEIFTVPVTLSEFKIHLGVAKNSLKPLILTKFLISTNKLSNVLIFT 448
Query: 295 SSVESTHRLCTLL-NHFGELRIKIKEY---SGLQRQSVRSKTLKAFREGKIQVLVSSDAM 350
S ES+ RL LL + F +L I +K S R S+RSK LK F ++ +L+++D +
Sbjct: 449 KSNESSIRLTELLISLFQKLSINLKIAFINSTNNRTSIRSKILKQFSNQEVNILITTDLI 508
Query: 351 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDEVKRFKKL 405
RG+DV + +V+NYD P + Y+HR GRTARA Q+G ++ K E F KL
Sbjct: 509 ARGIDVASITDVINYDLPNSSREYVHRVGRTARANQVGYAYSFCFGKGENSWFNKL 564
Score = 155 (59.6 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 49/191 (25%), Positives = 93/191 (48%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFER--------DLCINSPTGSGKTLSYALPIVQTLSNR 52
MG + F VQ++V + P + + D+ +N+ TGSGKTL+Y++PI+++L R
Sbjct: 187 MGFTEAFSVQISVLNMML-PEIEAQKLKPDRVGDILVNASTGSGKTLAYSIPIIESLYRR 245
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR-PKLEA 111
V +R ++++PT+ L QVK ++ L + SI DE L K P +
Sbjct: 246 VVPRVRVIILVPTKPLINQVKSTLLQLSSGTNLQIAALKNDVSINDEKDSLTKSVPDI-- 303
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
I P +++ L + L + ++D + + ++ +++D+ D + A +
Sbjct: 304 -IVSTPGRLVEHLLNDSINLSSLQYLIIDEADRLLNQSFQNWSNVLLDKIDSQINIA-EV 361
Query: 172 WLPTVLQLTRS 182
W +V +L S
Sbjct: 362 WKLSVQKLVFS 372
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 265 (98.3 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 66/207 (31%), Positives = 114/207 (55%)
Query: 225 MVLSATLTQDPNKLAQLDLHHP--LFLTTG-ETRYKLPERLESYKLICESKLKPLYLVAL 281
++ SAT+T++ ++LA + L P +F+ +T KL + + E+ + + + AL
Sbjct: 329 LLFSATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFIRIRAGRETDREAM-VAAL 387
Query: 282 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 341
+ + IVF + + R+ LL G L IK+ + Q R ++L F++ +I
Sbjct: 388 VTRTFQTNTIVFVRTKKDCQRMQILL---GLLGIKVGQMQSSLTQGQRIESLSKFKKAEI 444
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
VLVS+D +RG+D+EGV V+N + P IK YIHR GRTARAG+ GR +L+ +DE K
Sbjct: 445 DVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEDERKL 504
Query: 402 FKKLLQKADNDSCPIHSIPSSLIESLR 428
K+++ + + + ++E+ R
Sbjct: 505 LKEIVNSNADRTLKQRLVAPEVVEAYR 531
Score = 143 (55.4 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 35/93 (37%), Positives = 52/93 (55%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRA 59
G S P+Q Q I L +D+C + TG+GKT ++ LPI++ + R C R
Sbjct: 167 GYSDPTPIQ----QACIPVALTGKDICACAATGTGKTAAFVLPILERMIYRPKGASCTRV 222
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 92
LV++PTR+LA+QV VF ++ + L V L G
Sbjct: 223 LVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAG 255
Score = 137 (53.3 bits), Expect = 5.9e-30, Sum P(2) = 5.9e-30
Identities = 35/107 (32%), Positives = 62/107 (57%)
Query: 89 LAVGQSSIADEISELIKRPKLEAGICYDPEDV-LQE--LQSAVDILVATPGRLMDHINAT 145
LA+ + ++S I+ LE +C D+ QE L+S D++VATPGRL+DH++ +
Sbjct: 231 LAIQVFQVFRKLSTFIQ---LEVCLCAGGLDLKAQEAALRSGPDVVVATPGRLIDHLHNS 287
Query: 146 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
F L ++ LV+DE DR+L EA++ + +++L + + A+
Sbjct: 288 PSFNLSNIEVLVLDEADRMLEEAFRDQMNELIRLCAQNRQTLLFSAT 334
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 230 (86.0 bits), Expect = 2.1e-30, Sum P(3) = 2.1e-30
Identities = 64/189 (33%), Positives = 91/189 (48%)
Query: 210 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 269
+ R K P PR ++ SAT+ D LAQ L P+ + G + Y +
Sbjct: 165 IRRVLKHLP-PRRQTLLFSATMPIDIRTLAQDILVDPVTVQVGTVAPAVTVAHALYPV-- 221
Query: 270 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 329
E LK L+ LL+ E ++FT + RL L G + G Q+ R
Sbjct: 222 EQHLKTPLLLELLRHTDTESVLIFTRTKHRAKRLGEQLEKAG---YRAASLQGNLSQNRR 278
Query: 330 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 389
L FR+G Q+LV++D RG+DV V++V+NYD P + YIHR GRT RA + G
Sbjct: 279 QAALDGFRDGTFQILVATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGD 338
Query: 390 CFTLLHKDE 398
FTL+ D+
Sbjct: 339 AFTLVTSDD 347
Score = 114 (45.2 bits), Expect = 2.1e-30, Sum P(3) = 2.1e-30
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84
RD+ + TG+GKT ++ALPI+ L +RALV+ PTR+LA Q+ D F +
Sbjct: 39 RDVMGLAQTGTGKTAAFALPILHRLQQGERGRVRALVIAPTRELAEQINDSFVTLGRQTR 98
Query: 85 LSVGLAVGQSSIADEISEL 103
L G + ++ +L
Sbjct: 99 LRSVTVYGGVGVNPQVQKL 117
Score = 93 (37.8 bits), Expect = 2.1e-30, Sum P(3) = 2.1e-30
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 164
G+ +P+ +Q+L++ +++VA PGRL+DHI A L L LV+DE D++
Sbjct: 107 GVGVNPQ--VQKLKAGAEVVVACPGRLLDHI-AQGTIDLSRLEVLVLDEADQM 156
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 256 (95.2 bits), Expect = 2.2e-30, Sum P(2) = 2.2e-30
Identities = 65/177 (36%), Positives = 96/177 (54%)
Query: 217 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 275
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y L SK K
Sbjct: 192 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYLFIPSKFKD 250
Query: 276 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 335
YLV +L L ++F S+ +T R LL + G I + G QS R +L
Sbjct: 251 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQSKRLGSLNK 307
Query: 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 392
F+ +L+++D +RG+D+ V+ VVN+D P + K YIHR GRTARAG RC++
Sbjct: 308 FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAG---RCWS 361
Score = 141 (54.7 bits), Expect = 2.2e-30, Sum P(2) = 2.2e-30
Identities = 36/102 (35%), Positives = 56/102 (54%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 46 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 102
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
LA Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 103 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHI 144
Score = 139 (54.0 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 56/182 (30%), Positives = 86/182 (47%)
Query: 130 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 189
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 144 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 199
Query: 190 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 249
TFL SA + K +++ ++R P VK +S+ Q KL Q L P
Sbjct: 200 ---TFLFSATMT-KKVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYLFIPSKF 248
Query: 250 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 308
Y L E S+ + C + LL++LG I + + RL +L N
Sbjct: 249 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT-AIPLHGQMSQSKRLGSL-N 306
Query: 309 HF 310
F
Sbjct: 307 KF 308
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 258 (95.9 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 63/192 (32%), Positives = 103/192 (53%)
Query: 226 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 285
+ SAT+T KL + L +P+ + ++Y+ + L L K K YL +L L
Sbjct: 298 LFSATMTSKVAKLQRASLVNPVKVQVA-SKYQTVDTLLQQYLFVPFKYKDCYLAYILNEL 356
Query: 286 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 345
I+FTS+ S+ ++ +L + G I I +G Q R +L F++G +LV
Sbjct: 357 AGNLTIIFTSTCASSTKIAMMLRNLGFGAIPI---NGDMDQGKRLASLNKFKQGTKSILV 413
Query: 346 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
++D RG+D+ V+ V+NYD P K Y+HR GRTARAG GR T++ + +V+ ++++
Sbjct: 414 ATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMYQRI 473
Query: 406 --LQKADNDSCP 415
+ K DS P
Sbjct: 474 EFVLKKKLDSFP 485
Score = 139 (54.0 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 38/113 (33%), Positives = 59/113 (52%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ +E+I L RD+ + TGSGKT ++ +P++Q L A + L L + PTR+LA Q+
Sbjct: 145 IQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQKLLE-APQGLFCLALAPTRELAYQI 203
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 125
D F AI +G+ + VG + L K+P + G P VL L+
Sbjct: 204 ADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKKPHVVVG---SPGRVLHHLE 253
Score = 117 (46.2 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 38/138 (27%), Positives = 65/138 (47%)
Query: 59 ALVVLPTRDLALQV-KDVFA-AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 116
A V+P L+ + +F A+AP L+ +A ++I I +K L GI D
Sbjct: 171 AAFVIPVLQKLLEAPQGLFCLALAPTRELAYQIADQFNAIGSTIG--VKTCVLVGGI--D 226
Query: 117 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 176
L ++V +PGR++ H+ T+GF L + Y ++DE DRL ++ + +
Sbjct: 227 SMSQSLALAKKPHVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNI 286
Query: 177 LQ-LTRSDNENRFSDAST 193
L+ + + N FS T
Sbjct: 287 LKVIPKERNTYLFSATMT 304
Score = 43 (20.2 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 287 EEKCIVFTSSVESTHRLCT 305
EE ++F V+ HR+ T
Sbjct: 488 EETVLIFLERVQEAHRIAT 506
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 259 (96.2 bits), Expect = 8.4e-30, Sum P(2) = 8.4e-30
Identities = 61/190 (32%), Positives = 102/190 (53%)
Query: 217 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 275
K PR + L SAT+T+ +KL + L P ++ +RYK + L+ + + +K K
Sbjct: 213 KVIPRERRTYLFSATMTKKVSKLERASLRDPARVSVS-SRYKTVDNLKQHYIFVPNKYKE 271
Query: 276 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 335
YLV LL IVF ++ +T ++ +L G + + G Q R +L
Sbjct: 272 TYLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLH---GQMSQEKRLGSLNK 328
Query: 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395
F+ ++LV +D RG+D+ V+ V+NYD P+ K Y+HR GRTARAG+ G T++
Sbjct: 329 FKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVT 388
Query: 396 KDEVKRFKKL 405
+ +V+ ++K+
Sbjct: 389 QYDVEAYQKI 398
Score = 134 (52.2 bits), Expect = 8.4e-30, Sum P(2) = 8.4e-30
Identities = 31/97 (31%), Positives = 54/97 (55%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ Q + L +D+ + TGSGKT ++A+P++Q+L + + LV+ PTR+LA Q+
Sbjct: 70 IQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHP-QAFFCLVLTPTRELAFQI 128
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
F A+ +GL + VG +A + L +RP +
Sbjct: 129 GQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHI 165
Score = 131 (51.2 bits), Expect = 8.3e-15, Sum P(2) = 8.3e-15
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 130 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRF 188
I+VATPGRL+DH+ T+GF L+ L +L++DE DR+L ++ L +L+ + R F
Sbjct: 165 IIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYLF 224
Query: 189 SDASTFLPSAF--GSLKTIRRCGVERGFK 215
S T S SL+ R V +K
Sbjct: 225 SATMTKKVSKLERASLRDPARVSVSSRYK 253
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 244 (91.0 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 63/210 (30%), Positives = 109/210 (51%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SAT +LAQ L P+ + G + ++ K ++ A + S
Sbjct: 423 VMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVTQNIIVTTEDEKRSHIQAFIDS 482
Query: 285 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
+ ++K I+F S L + L G RI ++ G + QS R + LK+F+ GK+++
Sbjct: 483 MSPKDKVIIFVSRKAVADHLSSDL---GIRRISVESLHGNREQSDRERALKSFKTGKVRI 539
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 403
L+++D +RG+DV V +V NYD P I+ Y+HR GRT RAG+ G TL+ +++ K
Sbjct: 540 LIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRNDWKIAG 599
Query: 404 KLLQKADNDSCPIHSIPSSLIESLRPVYKS 433
+L+ + + S+P L+ S+ YK+
Sbjct: 600 ELINILERAN---QSVPEDLV-SMAERYKA 625
Score = 107 (42.7 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
D + +++L DI++ATPGRL D + L+ + YLV+DE D++L ++ +
Sbjct: 353 DRDGQIKDLSKGADIIIATPGRLHD-LQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMK 411
Query: 176 VLQLTRSDNENRFSDAS 192
+L R D + + A+
Sbjct: 412 ILLDVRPDRQTVMTSAT 428
Score = 87 (35.7 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 30/76 (39%), Positives = 39/76 (51%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP-IV----QTLSNRAVRC 56
G P+Q W I G+ DL + TG+GKTLSY +P + Q + RA
Sbjct: 260 GFQKPTPIQSQAWP-IILQGI---DLIGVAQTGTGKTLSYLMPGFIHIDSQPVLQRARNG 315
Query: 57 LRALVVLPTRDLALQV 72
LV+ PTR+LALQV
Sbjct: 316 PGMLVLTPTRELALQV 331
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 228 (85.3 bits), Expect = 1.5e-29, Sum P(3) = 1.5e-29
Identities = 57/186 (30%), Positives = 98/186 (52%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLT-TGETRYKLPERLESYKLICESKLKPLYLVALLQ 283
M+ SAT+ L + L++PL + G++ KL + + +Y +I +S + + L+
Sbjct: 285 MMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVT 344
Query: 284 SLGEE-KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+ KCIVFT + RL L K + G QS R +TL FR+G
Sbjct: 345 EHAKGGKCIVFTQTKRDADRLSYALAR----SFKCEALHGDISQSQRERTLAGFRDGHFN 400
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
+LV++D RG+DV V+ +++Y+ P +T++HR GRT RAG+ G + +D+ R
Sbjct: 401 ILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQ-SRA 459
Query: 403 KKLLQK 408
K++++
Sbjct: 460 VKIIER 465
Score = 125 (49.1 bits), Expect = 1.5e-29, Sum P(3) = 1.5e-29
Identities = 36/100 (36%), Positives = 54/100 (54%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA-- 59
GI LFP+Q AV + P + RD+ + TG+GKTL++ +PI+ + + R
Sbjct: 123 GIEKLFPIQKAVLE----PAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRN 178
Query: 60 ---LVVLPTRDLALQVKDVFAAIAPAVG---LSVGLAVGQ 93
LV+ PTR+LA QV+ F AP++ L G +GQ
Sbjct: 179 PLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQ 218
Score = 86 (35.3 bits), Expect = 1.5e-29, Sum P(3) = 1.5e-29
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 121 LQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
+++L VD+ V TPGR++D + RG L + ++V+DE D++L+ + + +L+
Sbjct: 220 MRQLDYGVDVAVGTPGRVIDLMK--RGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEK 277
Query: 180 TRSDNENRFSDASTFLPSAFGSL 202
++ A+ +PS SL
Sbjct: 278 LPEKRQSMMFSAT--MPSWIRSL 298
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 185 (70.2 bits), Expect = 2.6e-29, Sum P(3) = 2.6e-29
Identities = 59/218 (27%), Positives = 104/218 (47%)
Query: 221 RLVKMVLSATLT-QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 279
R M+ SATL + A+ L+ P+ + R K ++ + + + K L+
Sbjct: 178 RKQNMLFSATLEGSGVIRFAREVLNDPIEIDVDAPR-KEKAKIHQWIHLADDKDHKFALL 236
Query: 280 A-LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 338
LL+ ++ IVF V++ + +L + I G Q R + L F +
Sbjct: 237 CHLLKQEDVKRAIVF---VKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTK 293
Query: 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
G++ VL+++D RG+D++ +++V+N+D P TYIHR GRT RAG G +L +
Sbjct: 294 GEVNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHD 353
Query: 399 VKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSGDV 436
++ K+ + + P+ +IE LRP +K V
Sbjct: 354 MRIVGKIERYIEQ---PLKR---RIIEELRPKHKEARV 385
Score = 128 (50.1 bits), Expect = 2.6e-29, Sum P(3) = 2.6e-29
Identities = 33/96 (34%), Positives = 52/96 (54%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC---LRALVVLPTRDLA 69
+ QET+ L +RD+ +PTG+GKT S+ LP +Q L + R R L++ PTR+LA
Sbjct: 27 IQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLIDFPRRYSGQARVLILTPTRELA 86
Query: 70 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 105
Q+ +A GL++ + G A + E +K
Sbjct: 87 SQIHRYACHLATDQGLNIAIITGGVPYAPQ-EEALK 121
Score = 121 (47.7 bits), Expect = 2.6e-29, Sum P(3) = 2.6e-29
Identities = 26/84 (30%), Positives = 49/84 (58%)
Query: 109 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 168
+ G+ Y P++ + L+ +DILVATPGRLM++++ + F+ E + L++DE DR+L
Sbjct: 107 ITGGVPYAPQE--EALKGNIDILVATPGRLMEYLDKGK-FSAESVDILIIDEADRMLDMG 163
Query: 169 YQAWLPTVLQLTRSDNENRFSDAS 192
+ A + + + +N A+
Sbjct: 164 FSAVVKAIALEAQGRKQNMLFSAT 187
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 185 (70.2 bits), Expect = 2.6e-29, Sum P(3) = 2.6e-29
Identities = 59/218 (27%), Positives = 104/218 (47%)
Query: 221 RLVKMVLSATLT-QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 279
R M+ SATL + A+ L+ P+ + R K ++ + + + K L+
Sbjct: 178 RKQNMLFSATLEGSGVIRFAREVLNDPIEIDVDAPR-KEKAKIHQWIHLADDKDHKFALL 236
Query: 280 A-LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 338
LL+ ++ IVF V++ + +L + I G Q R + L F +
Sbjct: 237 CHLLKQEDVKRAIVF---VKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTK 293
Query: 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
G++ VL+++D RG+D++ +++V+N+D P TYIHR GRT RAG G +L +
Sbjct: 294 GEVNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHD 353
Query: 399 VKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSGDV 436
++ K+ + + P+ +IE LRP +K V
Sbjct: 354 MRIVGKIERYIEQ---PLKR---RIIEELRPKHKEARV 385
Score = 128 (50.1 bits), Expect = 2.6e-29, Sum P(3) = 2.6e-29
Identities = 33/96 (34%), Positives = 52/96 (54%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC---LRALVVLPTRDLA 69
+ QET+ L +RD+ +PTG+GKT S+ LP +Q L + R R L++ PTR+LA
Sbjct: 27 IQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLIDFPRRYSGQARVLILTPTRELA 86
Query: 70 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 105
Q+ +A GL++ + G A + E +K
Sbjct: 87 SQIHRYACHLATDQGLNIAIITGGVPYAPQ-EEALK 121
Score = 121 (47.7 bits), Expect = 2.6e-29, Sum P(3) = 2.6e-29
Identities = 26/84 (30%), Positives = 49/84 (58%)
Query: 109 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 168
+ G+ Y P++ + L+ +DILVATPGRLM++++ + F+ E + L++DE DR+L
Sbjct: 107 ITGGVPYAPQE--EALKGNIDILVATPGRLMEYLDKGK-FSAESVDILIIDEADRMLDMG 163
Query: 169 YQAWLPTVLQLTRSDNENRFSDAS 192
+ A + + + +N A+
Sbjct: 164 FSAVVKAIALEAQGRKQNMLFSAT 187
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 218 (81.8 bits), Expect = 2.9e-29, Sum P(3) = 2.9e-29
Identities = 57/189 (30%), Positives = 98/189 (51%)
Query: 219 YPRLVKMVLSATLTQDP-NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPL 276
+ R ++ SATL N++A L +PL + G T + + + +C+ K
Sbjct: 177 HKRRQTLMFSATLDHSEINEIAAALLKNPLHVAIG-TAHAEHQDISQRIYLCDHLDHKEA 235
Query: 277 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 336
L LL ++ I+FT++ T RL L+ G + SG +Q+ R++ + F
Sbjct: 236 LLSRLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAAL---SGELKQAARNQIMDQF 292
Query: 337 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 396
G+ Q+LV++D +RG+D+ V+ V+N+D P + + Y+HR GRT RAG G +L+
Sbjct: 293 ARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGP 352
Query: 397 DEVKRFKKL 405
+ FKK+
Sbjct: 353 KDWDSFKKV 361
Score = 130 (50.8 bits), Expect = 2.9e-29, Sum P(3) = 2.9e-29
Identities = 38/110 (34%), Positives = 58/110 (52%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ-TLSNRAV--RCL 57
MGI++ P A+ ++ + L +DL +S TGSGKTL++ LP +Q +S RA+ R
Sbjct: 19 MGIAT--PT--AIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVISTRALSKRDP 74
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 107
R L++LPTR+LA QV + +G + D+ L K P
Sbjct: 75 RVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEP 124
Score = 81 (33.6 bits), Expect = 2.9e-29, Sum P(3) = 2.9e-29
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
D + L +VATPGR+ DH+ F L L L++DE DR+L + L + +
Sbjct: 115 DQAKALAKEPHFIVATPGRIADHLEQKNLF-LNGLELLILDEADRMLDLGFAPQLKAINE 173
Query: 179 LTRSDNENR 187
+D++ R
Sbjct: 174 A--ADHKRR 180
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 218 (81.8 bits), Expect = 2.9e-29, Sum P(3) = 2.9e-29
Identities = 57/189 (30%), Positives = 98/189 (51%)
Query: 219 YPRLVKMVLSATLTQDP-NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPL 276
+ R ++ SATL N++A L +PL + G T + + + +C+ K
Sbjct: 177 HKRRQTLMFSATLDHSEINEIAAALLKNPLHVAIG-TAHAEHQDISQRIYLCDHLDHKEA 235
Query: 277 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 336
L LL ++ I+FT++ T RL L+ G + SG +Q+ R++ + F
Sbjct: 236 LLSRLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAAL---SGELKQAARNQIMDQF 292
Query: 337 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 396
G+ Q+LV++D +RG+D+ V+ V+N+D P + + Y+HR GRT RAG G +L+
Sbjct: 293 ARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGP 352
Query: 397 DEVKRFKKL 405
+ FKK+
Sbjct: 353 KDWDSFKKV 361
Score = 130 (50.8 bits), Expect = 2.9e-29, Sum P(3) = 2.9e-29
Identities = 38/110 (34%), Positives = 58/110 (52%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ-TLSNRAV--RCL 57
MGI++ P A+ ++ + L +DL +S TGSGKTL++ LP +Q +S RA+ R
Sbjct: 19 MGIAT--PT--AIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVISTRALSKRDP 74
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 107
R L++LPTR+LA QV + +G + D+ L K P
Sbjct: 75 RVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEP 124
Score = 81 (33.6 bits), Expect = 2.9e-29, Sum P(3) = 2.9e-29
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
D + L +VATPGR+ DH+ F L L L++DE DR+L + L + +
Sbjct: 115 DQAKALAKEPHFIVATPGRIADHLEQKNLF-LNGLELLILDEADRMLDLGFAPQLKAINE 173
Query: 179 LTRSDNENR 187
+D++ R
Sbjct: 174 A--ADHKRR 180
>ZFIN|ZDB-GENE-030131-9685 [details] [associations]
symbol:ddx18 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 18" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030099 "myeloid
cell differentiation" evidence=IMP] [GO:0030097 "hemopoiesis"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-9685
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0030099 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K13179 CTD:8886
HOVERGEN:HBG105702 EMBL:AY648748 IPI:IPI00492099
RefSeq:NP_001003411.1 UniGene:Dr.24235 ProteinModelPortal:Q6DRL1
STRING:Q6DRL1 PRIDE:Q6DRL1 GeneID:321127 KEGG:dre:321127
InParanoid:Q6DRL1 NextBio:20807243 ArrayExpress:Q6DRL1 Bgee:Q6DRL1
Uniprot:Q6DRL1
Length = 653
Score = 197 (74.4 bits), Expect = 3.3e-29, Sum P(3) = 3.3e-29
Identities = 58/188 (30%), Positives = 95/188 (50%)
Query: 225 MVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP-ERLESYKLICESKLKPLYLVALL 282
M+ SAT T+ LA++ L PL++ + + E LE ++C S+ + L L L
Sbjct: 343 MLFSATQTRKVEDLARISLKKEPLYVGVDDNKDTATVEGLEQGYVVCPSEKRFLLLFTFL 402
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+ ++K +VF SS S LLN+ + + + G Q+Q+ R+ T F
Sbjct: 403 KKNRKKKLMVFFSSCMSVKFHYELLNY---IDLPVMAIHGKQKQTKRTTTFFQFCNADSG 459
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA-GQLGRCFTLLHKDEVKR 401
+L+ +D RG+D+ V+ +V +D P K YIHR GRTAR G +L +E+
Sbjct: 460 ILLCTDVAARGLDIPEVDWIVQFDPPDDPKEYIHRVGRTARGINGRGHALLILRPEELG- 518
Query: 402 FKKLLQKA 409
F + L++A
Sbjct: 519 FLRFLKQA 526
Score = 140 (54.3 bits), Expect = 3.3e-29, Sum P(3) = 3.3e-29
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 122 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 181
Q+L + V+ILVATPGRL+DH+ T GF ++L L++DE DR+L ++ L +++L
Sbjct: 278 QKLANGVNILVATPGRLLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLP 337
Query: 182 SDNENR-FSDAST 193
++ FS T
Sbjct: 338 KKRQSMLFSATQT 350
Score = 105 (42.0 bits), Expect = 3.3e-29, Sum P(3) = 3.3e-29
Identities = 32/106 (30%), Positives = 54/106 (50%)
Query: 2 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLR 58
G+ + F + +TI P L RD+ + TGSGKTL++ +P ++ + R
Sbjct: 175 GVKEMGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPSIELIYKLKFMPRNGT 234
Query: 59 ALVVL-PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
++VL PTR+LA+Q V + + GL +G S+ + E +L
Sbjct: 235 GVIVLSPTRELAMQTYGVLKELMTHHVHTYGLIMGGSNRSAEAQKL 280
Score = 47 (21.6 bits), Expect = 3.2e-23, Sum P(3) = 3.2e-23
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 71 QVKDVF--AAIAPAVGLSVGLAVGQSSIADEISELIKRPK 108
+VKDV + +A +V + Q S++DE++E ++PK
Sbjct: 37 EVKDVLDESEVASDSAPNV-IEEQQQSVSDEVNETSQKPK 75
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 235 (87.8 bits), Expect = 4.1e-29, Sum P(2) = 4.1e-29
Identities = 55/180 (30%), Positives = 93/180 (51%)
Query: 226 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 285
+ SAT+T KL + LH+P+ + ++Y+ + L ++ K L+ LL
Sbjct: 302 LFSATMTNKIEKLQRASLHNPVRVAVS-SKYQTADNLVQSMMLVNDGYKNTILIHLLNEF 360
Query: 286 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 345
+ IVFT +V R L G + + G QS R +L F+ + +LV
Sbjct: 361 MGKSIIVFTRTVAHAQRTALLARILGFNAVPLH---GQLSQSQRLGSLNKFKSNQANILV 417
Query: 346 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405
++D RG+D+ V+ V+NYD P K YIHR GRTARAG+ G+ +L+ + +++ + ++
Sbjct: 418 ATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRI 477
Score = 158 (60.7 bits), Expect = 4.1e-29, Sum P(2) = 4.1e-29
Identities = 40/122 (32%), Positives = 67/122 (54%)
Query: 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63
S F + E I L +D+ + TGSGKT ++A+PI+Q+L + A + ALV+
Sbjct: 140 SMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWH-AQQPYFALVLA 198
Query: 64 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 123
PTR+L Q+KD F A+ ++GL VG + D+ +L+++P + I P ++
Sbjct: 199 PTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHV---IVATPGRIMDH 255
Query: 124 LQ 125
L+
Sbjct: 256 LE 257
Score = 139 (54.0 bits), Expect = 4.0e-27, Sum P(2) = 4.0e-27
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
D D ++L ++VATPGR+MDH+ T+GF+L++L YLV+DE DRLL + L
Sbjct: 230 DMMDQARDLMRKPHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDK 289
Query: 176 VLQL 179
+L++
Sbjct: 290 ILKV 293
>MGI|MGI:1925644 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1925644 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:CH466556 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AK080767 EMBL:AK133545 EMBL:AL645615 EMBL:BC029094
IPI:IPI00336965 RefSeq:NP_084372.2 UniGene:Mm.280544
ProteinModelPortal:Q8K301 SMR:Q8K301 STRING:Q8K301
PhosphoSite:Q8K301 PaxDb:Q8K301 PRIDE:Q8K301
Ensembl:ENSMUST00000049257 GeneID:78394 KEGG:mmu:78394
InParanoid:Q3UZY9 NextBio:348796 Bgee:Q8K301 CleanEx:MM_DDX52
Genevestigator:Q8K301 GermOnline:ENSMUSG00000020677 Uniprot:Q8K301
Length = 598
Score = 226 (84.6 bits), Expect = 4.5e-29, Sum P(3) = 4.5e-29
Identities = 60/198 (30%), Positives = 96/198 (48%)
Query: 220 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 279
P++ + + SAT D + +L+L + + ++ G R E +E L S+ L +
Sbjct: 346 PKVRRAMFSATFAYDVEQWCKLNLDNVVSVSIG-ARNSAVETVEQELLFVGSETGKLLAM 404
Query: 280 ALLQSLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 338
L G + +VF S+E L L + G + + + Q+Q R T+ +FR
Sbjct: 405 RELVKKGFKPPVLVFVQSIERAKELFHELIYEG-INVDVIHAERTQQQ--RDNTVHSFRA 461
Query: 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
GKI VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 462 GKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDD 521
Query: 399 VKRFKKLLQKADNDSCPI 416
+ + CP+
Sbjct: 522 KPLLRSVANVIQQAGCPV 539
Score = 136 (52.9 bits), Expect = 4.5e-29, Sum P(3) = 4.5e-29
Identities = 31/91 (34%), Positives = 52/91 (57%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F V + + I L R+L ++PTGSGKTL++++PI+ L + RALV+ PTR
Sbjct: 186 FQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPTR 245
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 97
+LA Q+ I+ G + + + +++IA
Sbjct: 246 ELASQIHRELIKISEGTGFRIHM-IHKAAIA 275
Score = 72 (30.4 bits), Expect = 4.5e-29, Sum P(3) = 4.5e-29
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 129 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 184
DILV TP RL+ + G L ++ +LVVDE+D+L + ++ L ++ S
Sbjct: 288 DILVTTPNRLIYLLKQDPPGIDLTNVEWLVVDESDKLFEDGKTGFREQLASIFLACTSPK 347
Query: 185 ENRFSDASTF 194
R ++TF
Sbjct: 348 VRRAMFSATF 357
Score = 41 (19.5 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 93 QSSIADEISELIKRPKLEAGICYDPEDVLQE 123
Q ++ + ++IK+P IC P+ L++
Sbjct: 547 QKLLSKQKKKMIKKPLERESICTTPKYFLEQ 577
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 227 (85.0 bits), Expect = 5.8e-29, Sum P(2) = 5.8e-29
Identities = 66/201 (32%), Positives = 104/201 (51%)
Query: 210 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT-TGETRYKLPERLESYKLI 268
VE ++ P R M+ SAT+ KLA+ L +PL + G+ KL E ++ Y +
Sbjct: 273 VESILENLPTKRQ-SMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIA 331
Query: 269 CESKLKPLYLVALLQSLGEE-KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 327
S K L L+ + K IVFT + + L++ I + G Q
Sbjct: 332 TTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSN----SIATEALHGDISQH 387
Query: 328 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 387
R +TL AFR+GK VLV++D +RG+D+ V+ V++Y+ P +T++HR+GRT RAG+
Sbjct: 388 QRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKE 447
Query: 388 GRCFTLLHKDEVKRFKKLLQK 408
G L+H KR + L++
Sbjct: 448 GSAI-LMHTSSQKRTVRSLER 467
Score = 171 (65.3 bits), Expect = 5.8e-29, Sum P(2) = 5.8e-29
Identities = 60/186 (32%), Positives = 94/186 (50%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---------R 52
GI+ LFP+Q AV + P L RD+ + TG+GKTL++ +PI++ L+ R
Sbjct: 121 GITHLFPIQRAV----LVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRR 176
Query: 53 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
+ R + LV+ PTR+LA QV+ AP LS G +S I++ L G
Sbjct: 177 SGRLPKFLVLAPTRELAKQVEKEIKESAPY--LSTVCVYGG------VSYTIQQSALTRG 228
Query: 113 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
VD++V TPGR++D I R L + YLV+DE D++L ++
Sbjct: 229 ---------------VDVVVGTPGRIIDLIEG-RSLKLGEVEYLVLDEADQMLAVGFEEA 272
Query: 173 LPTVLQ 178
+ ++L+
Sbjct: 273 VESILE 278
>FB|FBgn0010220 [details] [associations]
symbol:Dbp45A "DEAD box protein 45A" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS;NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
GeneTree:ENSGT00670000098028 EMBL:L13612 EMBL:Z23266 EMBL:AY058728
PIR:S38329 RefSeq:NP_476927.1 UniGene:Dm.4231
ProteinModelPortal:Q07886 SMR:Q07886 PaxDb:Q07886
EnsemblMetazoa:FBtr0088564 GeneID:35917 KEGG:dme:Dmel_CG12759
CTD:35917 FlyBase:FBgn0010220 InParanoid:Q07886 OMA:CQLLSMT
OrthoDB:EOG431ZDJ PhylomeDB:Q07886 GenomeRNAi:35917 NextBio:795815
Bgee:Q07886 GermOnline:CG12759 Uniprot:Q07886
Length = 521
Score = 177 (67.4 bits), Expect = 8.6e-29, Sum P(3) = 8.6e-29
Identities = 46/169 (27%), Positives = 75/169 (44%)
Query: 260 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH-FGELRIKIK 318
E L+ L+C + + L+ L+ EE +T + C LL+ + I
Sbjct: 220 ETLDQRYLLCADYDRDMVLIEALRKYREENENANVMIFTNTKKYCQLLSMTLKNMEIDNV 279
Query: 319 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 378
G RQ R L F+ +I+ L+++D RG+D+ V V+N+ P K YIHR
Sbjct: 280 CLHGFMRQKERVAALSRFKSNQIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRV 339
Query: 379 GRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESL 427
GRTARAG+ G ++ +++ N H I ++E +
Sbjct: 340 GRTARAGRKGMSISIFRFPRDLELLAAIEEEINTKLTEHPIDQRMVERI 388
Score = 143 (55.4 bits), Expect = 8.6e-29, Sum P(3) = 8.6e-29
Identities = 38/110 (34%), Positives = 60/110 (54%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSP-TGSGKTLSYALPIVQTLSNRAVRCLRA 59
+G+ P+Q Q+ I P + CI + TGSGKT ++ALPI++ LS V A
Sbjct: 25 LGLKGATPIQ----QKCI-PAILAGQDCIGAAKTGSGKTFAFALPILERLSEEPVSHF-A 78
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
LV+ PT +LA Q+ + F A+G+ V + G + E +L++RP +
Sbjct: 79 LVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHI 128
Score = 116 (45.9 bits), Expect = 8.6e-29, Sum P(3) = 8.6e-29
Identities = 26/71 (36%), Positives = 38/71 (53%)
Query: 122 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 181
Q+L I+VA PGRL DH+ F+ ++L YLVVDE DR+L + L + +
Sbjct: 120 QKLMQRPHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLP 179
Query: 182 SDNENRFSDAS 192
+N F A+
Sbjct: 180 KTRQNLFFSAT 190
>RGD|621743 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:621743
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
CTD:11056 GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AB055628 IPI:IPI00201365 RefSeq:NP_445977.1 UniGene:Rn.18605
ProteinModelPortal:Q99PT0 SMR:Q99PT0 PRIDE:Q99PT0
Ensembl:ENSRNOT00000003600 GeneID:85432 KEGG:rno:85432
InParanoid:Q99PT0 NextBio:617542 Genevestigator:Q99PT0
GermOnline:ENSRNOG00000002612 Uniprot:Q99PT0
Length = 598
Score = 224 (83.9 bits), Expect = 1.6e-28, Sum P(3) = 1.6e-28
Identities = 60/198 (30%), Positives = 95/198 (47%)
Query: 220 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 279
P++ + + SAT D + +L+L + + ++ G R E +E L S+ L +
Sbjct: 346 PKVRRAMFSATFAYDVEQWCKLNLDNIVSVSIG-ARNSAVETVEQELLFVGSETGKLLAM 404
Query: 280 ALLQSLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 338
L G +VF S+E L L + G + + + Q+Q R T+ +FR
Sbjct: 405 RELVKKGFNPPVLVFVQSIERAKELFHELIYEG-INVDVIHAERTQQQ--RDNTVHSFRA 461
Query: 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
GKI VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 462 GKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDD 521
Query: 399 VKRFKKLLQKADNDSCPI 416
+ + CP+
Sbjct: 522 KPLLRSVANVIQQAGCPV 539
Score = 136 (52.9 bits), Expect = 1.6e-28, Sum P(3) = 1.6e-28
Identities = 31/91 (34%), Positives = 52/91 (57%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F V + + I L R+L ++PTGSGKTL++++PI+ L + RALV+ PTR
Sbjct: 186 FQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPTR 245
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 97
+LA Q+ I+ G + + + +++IA
Sbjct: 246 ELASQIHRELIKISEGTGFRIHM-IHKAAIA 275
Score = 69 (29.3 bits), Expect = 1.6e-28, Sum P(3) = 1.6e-28
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 129 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 184
DILV TP RL+ + G L + +LVVDE+D+L + ++ L ++ S
Sbjct: 288 DILVTTPNRLIYLLKQEPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSPK 347
Query: 185 ENRFSDASTF 194
R ++TF
Sbjct: 348 VRRAMFSATF 357
>UNIPROTKB|A8MTP9 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000242486
HOVERGEN:HBG051332 EMBL:AC091199 HGNC:HGNC:20038
PharmGKB:PA134904836 ChiTaRS:DDX52 NextBio:42007 IPI:IPI00394982
ProteinModelPortal:A8MTP9 SMR:A8MTP9 STRING:A8MTP9 PRIDE:A8MTP9
Ensembl:ENST00000394367 ArrayExpress:A8MTP9 Bgee:A8MTP9
Uniprot:A8MTP9
Length = 491
Score = 220 (82.5 bits), Expect = 1.7e-28, Sum P(3) = 1.7e-28
Identities = 59/194 (30%), Positives = 92/194 (47%)
Query: 224 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 283
+ + SAT D + +L+L + + ++ G R E +E L S+ L + L
Sbjct: 241 RAMFSATFAYDVEQWCKLNLDNVISVSIG-ARNSAVETVEQELLFVGSETGKLLAMRELV 299
Query: 284 SLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
G +VF S+E L L + G + + + Q+Q R T+ +FR GKI
Sbjct: 300 KKGFNPPVLVFVQSIERAKELFHELIYEG-INVDVIHAERTQQQ--RDNTVHSFRAGKIW 356
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 357 VLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLL 416
Query: 403 KKLLQKADNDSCPI 416
+ + CP+
Sbjct: 417 RSVANVIQQAGCPV 430
Score = 135 (52.6 bits), Expect = 1.7e-28, Sum P(3) = 1.7e-28
Identities = 29/91 (31%), Positives = 53/91 (58%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F + + + I L R+L ++PTGSGKTL++++PI+ L A + RAL++ PTR
Sbjct: 77 FQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTR 136
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 97
+LA Q+ I+ G + + + ++++A
Sbjct: 137 ELASQIHRELIKISEGTGFRIHM-IHKAAVA 166
Score = 69 (29.3 bits), Expect = 1.7e-28, Sum P(3) = 1.7e-28
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 129 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 184
DILV TP RL+ + G L + +LVVDE+D+L + ++ L ++ S
Sbjct: 179 DILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 238
Query: 185 ENRFSDASTF 194
R ++TF
Sbjct: 239 VRRAMFSATF 248
>UNIPROTKB|F1NTK9 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
Length = 822
Score = 211 (79.3 bits), Expect = 2.0e-28, Sum P(3) = 2.0e-28
Identities = 58/177 (32%), Positives = 93/177 (52%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SATL + + A+ L P+ + + KL E+L+ KP L+ LL+
Sbjct: 214 VLFSATLPKLLVEFARAGLTEPMLIRL-DVESKLSEQLKLAFFHVRGDDKPAVLLHLLRC 272
Query: 285 L--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+ +++ +VF ++ T L LL G I YS L Q+ R + F GK Q
Sbjct: 273 VVKPQDQTVVFVATKHHTEYLKELLTSQGICCTHI--YSSLD-QTARKINIAKFAHGKCQ 329
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
VL+ +D RG+D+ ++NV+NY PA K ++HR GR ARAG+ G ++L+ DE+
Sbjct: 330 VLLVTDVAARGLDIPMLDNVINYSFPAKSKLFLHRVGRVARAGRSGTAYSLVAPDEM 386
Score = 130 (50.8 bits), Expect = 2.0e-28, Sum P(3) = 2.0e-28
Identities = 32/103 (31%), Positives = 52/103 (50%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
+ V + ++TI L RD+ + TGSGKT + LP+ + L + RAL++ PTR
Sbjct: 56 YKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLLPMFERLKAPSPSGARALILSPTR 115
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
+LALQ + GL L +G + D+ + L + P +
Sbjct: 116 ELALQTLKFTKELGKFTGLKTALVLGGDKMEDQFAALHENPDI 158
Score = 96 (38.9 bits), Expect = 2.0e-28, Sum P(3) = 2.0e-28
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
ED L DI++ATPGRL+ H+ L+ + Y+V DE DRL + L +L
Sbjct: 146 EDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIL 204
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 244 (91.0 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
Identities = 63/202 (31%), Positives = 104/202 (51%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 282
M+ SAT+T++ +L +L L+ PL L+ + + P E I ++ + L++L
Sbjct: 348 MLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLC 407
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+ K I+F+ + ++ HRL L FG +K E G Q+ R +L+ FR+ ++
Sbjct: 408 TRTFKSKVIIFSGTKQAAHRLKIL---FGLAGLKAAELHGNLTQAQRLDSLELFRKQEVD 464
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
L+++D RG+D+ GV V+NY P I +Y+HR GRTARAG+ G T + D +
Sbjct: 465 FLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFV-TDSDRSL 523
Query: 403 KKLLQKADNDSCPIHSIPSSLI 424
K++ K IP I
Sbjct: 524 LKVIAKKVGSKLKSRVIPEQSI 545
Score = 147 (56.8 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
Identities = 40/132 (30%), Positives = 68/132 (51%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL--R 58
+G P+Q A I L RDLC ++ TGSGKT ++ALP ++ L R R R
Sbjct: 185 LGYKKPTPIQAAC----IPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATR 240
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 118
L++ PTR+LA+Q+ + +A + GL VG S+ ++ L P + + P
Sbjct: 241 VLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDI---VVATPG 297
Query: 119 DVLQELQSAVDI 130
++ L++++ +
Sbjct: 298 RMIDHLRNSMSV 309
Score = 135 (52.6 bits), Expect = 4.2e-27, Sum P(2) = 4.2e-27
Identities = 39/124 (31%), Positives = 67/124 (54%)
Query: 59 ALVVLPTRD-LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL--IKRPKLEAGICY 115
A LPT + L + K VFA + + LAV S+ +++ IK + G+
Sbjct: 219 AAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSV 278
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
++V+ L+S DI+VATPGR++DH+ + L+ L L++DE DRLL+ + +
Sbjct: 279 REQEVV--LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITE 336
Query: 176 VLQL 179
+++L
Sbjct: 337 LVRL 340
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 225 (84.3 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
Identities = 54/208 (25%), Positives = 110/208 (52%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SAT + + +LA+ ++HP+ ++ R ++ + + K L+ L++
Sbjct: 182 LMFSATFSDEIRELAKGLVNHPVEISV-TPRNAAATTVKQWICPVDKTQKSALLIQLIKQ 240
Query: 285 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 344
++ +VF+ + +RL L + I G + Q R+K L F+ G+++VL
Sbjct: 241 ENWQQVLVFSRTKHGANRLAKSLI---QAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297
Query: 345 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK- 403
V++D RG+D++ + VVN+D P + Y+HR GRT RAG G+ +L+ +E+K K
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKD 357
Query: 404 ------KLLQKADNDS-CPIHSIPSSLI 424
++L++ + + P+H++P + +
Sbjct: 358 IERLINRVLERQEVEGFSPVHALPETTL 385
Score = 105 (42.0 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHI--NATRGFTLEHLCYLVVDETDRLLREAY 169
G+ +P+ + +L+ VD+LVATPGRL+D + NA + LE LV+DE DR+L +
Sbjct: 110 GVPINPQ--INKLRHGVDVLVATPGRLLDLVQQNAVKFNQLE---ILVLDEADRMLDMGF 164
Query: 170 QAWLPTVLQLTRSDNENRFSDASTF 194
+ +L L + +N A TF
Sbjct: 165 IRDIKKILALLPAKRQNLMFSA-TF 188
Score = 94 (38.1 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
Identities = 31/105 (29%), Positives = 53/105 (50%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS--NRAVRC-LR 58
G + P+Q + I L +D+ + TG+GKT + LP+++ L+ ++A R
Sbjct: 20 GYDTPSPIQA----QAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELLAKGHKAKSGQTR 75
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
ALV+ PTR+LA QV + + L + G I +I++L
Sbjct: 76 ALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKL 120
Score = 41 (19.5 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 316 KIKEYSGLQRQSVRSKTLKAFREGKIQ 342
K K +SG Q++S ++ K+ +G+ Q
Sbjct: 475 KAKPHSGAQQRSHAERSEKSNNDGRRQ 501
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 204 (76.9 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
Identities = 58/207 (28%), Positives = 99/207 (47%)
Query: 200 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ-DPNKLAQLDLHHPLFLTTGETRYKL 258
G K +RR + K + R ++ SATL D N +A L+ P + G +
Sbjct: 167 GFAKELRR--IHNAAKHR---RRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEH 221
Query: 259 PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIK 318
+ + + L K L +L + I+FT++ T RL LN + +K
Sbjct: 222 KDITQHFYLCDHLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLN---QNNLKAV 278
Query: 319 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 378
SG Q+ R+ + F ++LV++D +RG+D+ V +V+N+D P + + Y+HR
Sbjct: 279 ALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRV 338
Query: 379 GRTARAGQLGRCFTLLHKDEVKRFKKL 405
GRT RAG G +L+ + + FK++
Sbjct: 339 GRTGRAGNKGDAMSLVGPKDWESFKRV 365
Score = 129 (50.5 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
Identities = 32/105 (30%), Positives = 56/105 (53%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QTLSNRAVRCL--RALVVL 63
F + Q+ I + RDL +S TGSGKTL++ LP++ ++L +A R L+++
Sbjct: 25 FKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSLKTKAFSAKDPRGLILV 84
Query: 64 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 108
PTR+LA QV ++ + + L G + D++ L + P+
Sbjct: 85 PTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPR 129
Score = 90 (36.7 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 165
D ++ L +VATPGRL DH++ R LE L LV+DE DR+L
Sbjct: 119 DQVKALARGPRFIVATPGRLADHLDH-RSLFLEGLETLVLDEADRML 164
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 204 (76.9 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
Identities = 58/207 (28%), Positives = 99/207 (47%)
Query: 200 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ-DPNKLAQLDLHHPLFLTTGETRYKL 258
G K +RR + K + R ++ SATL D N +A L+ P + G +
Sbjct: 167 GFAKELRR--IHNAAKHR---RRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEH 221
Query: 259 PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIK 318
+ + + L K L +L + I+FT++ T RL LN + +K
Sbjct: 222 KDITQHFYLCDHLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLN---QNNLKAV 278
Query: 319 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 378
SG Q+ R+ + F ++LV++D +RG+D+ V +V+N+D P + + Y+HR
Sbjct: 279 ALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRV 338
Query: 379 GRTARAGQLGRCFTLLHKDEVKRFKKL 405
GRT RAG G +L+ + + FK++
Sbjct: 339 GRTGRAGNKGDAMSLVGPKDWESFKRV 365
Score = 129 (50.5 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
Identities = 32/105 (30%), Positives = 56/105 (53%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QTLSNRAVRCL--RALVVL 63
F + Q+ I + RDL +S TGSGKTL++ LP++ ++L +A R L+++
Sbjct: 25 FKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSLKTKAFSAKDPRGLILV 84
Query: 64 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 108
PTR+LA QV ++ + + L G + D++ L + P+
Sbjct: 85 PTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPR 129
Score = 90 (36.7 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 165
D ++ L +VATPGRL DH++ R LE L LV+DE DR+L
Sbjct: 119 DQVKALARGPRFIVATPGRLADHLDH-RSLFLEGLETLVLDEADRML 164
>FB|FBgn0021995 [details] [associations]
symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
NextBio:836725 Uniprot:Q7JQN4
Length = 782
Score = 253 (94.1 bits), Expect = 3.4e-28, Sum P(2) = 3.4e-28
Identities = 66/207 (31%), Positives = 109/207 (52%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPL--FLTTGE-TRYKLPERLESYKLICESKLKPLYLVAL 281
M+ SAT+++ LA + L P+ F+ + + L + + E +P+ L +L
Sbjct: 339 MLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPI-LASL 397
Query: 282 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 341
+ + C+VF + + HRL LL G L ++ E G Q R ++LK F+E +I
Sbjct: 398 ICRTFHDHCMVFVQTKKQAHRLHILL---GLLGVRAGELHGNLTQQQRLESLKKFKEEQI 454
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
VL+++D RG+D+ GV V+N+ P + YIHR GRTARAG+ G +L + E K
Sbjct: 455 DVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKI 514
Query: 402 FKKLLQKADNDSCPIHSIPSSLIESLR 428
K +++ A++ + IP +IE R
Sbjct: 515 VKDIIKNAES-TIKNRIIPPEIIEKYR 540
Score = 135 (52.6 bits), Expect = 3.4e-28, Sum P(2) = 3.4e-28
Identities = 35/109 (32%), Positives = 58/109 (53%)
Query: 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRAL 60
++P + TI L RD+C + TG+GKT +Y LP ++ L +N+A+ R L
Sbjct: 178 IYPTPIQA--STIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAIT--RVL 233
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
V++PTR+L QV V + + VGLA+G + + + L + P +
Sbjct: 234 VLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQNPDI 282
Score = 125 (49.1 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 29/79 (36%), Positives = 47/79 (59%)
Query: 102 ELIKRPKLEAGICYDPEDV-LQE--LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 158
+L + ++ G+ DV QE L+ DI++ATPGRL+DHI T FTL+ + L++
Sbjct: 251 QLCQFTTIDVGLAIGGLDVKAQEAVLRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLIL 310
Query: 159 DETDRLLREAYQAWLPTVL 177
DE DR+L E + + ++
Sbjct: 311 DEADRMLDEYFAEQMKEII 329
Score = 38 (18.4 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 14/70 (20%), Positives = 28/70 (40%)
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
+D+++ +S + + P + + N E L ++ +R L + Q T
Sbjct: 516 KDIIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNILDEEQAERQLAKTEQQLSKTER 575
Query: 178 QLTRSDNENR 187
+L NE R
Sbjct: 576 KLLGQTNERR 585
>UNIPROTKB|I3LJA0 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:FP565631 EMBL:FP312903 Ensembl:ENSSSCT00000024730
Uniprot:I3LJA0
Length = 507
Score = 220 (82.5 bits), Expect = 3.5e-28, Sum P(3) = 3.5e-28
Identities = 59/197 (29%), Positives = 94/197 (47%)
Query: 221 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA 280
++ + + SAT D + +L+L + + ++ G R E +E L S+ L +
Sbjct: 254 KVKRAMFSATFAYDVEQWCKLNLDNVITVSIG-ARNSAVETVEQELLFVGSETGKLLAMR 312
Query: 281 LLQSLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 339
L G +VF S+E L L + G + + + Q+Q R T+ +FR G
Sbjct: 313 ELVKKGFNPPVLVFVQSIERAKELFHELIYEG-INVDVIHADRTQQQ--RDNTVHSFRAG 369
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
KI VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 370 KIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDK 429
Query: 400 KRFKKLLQKADNDSCPI 416
+ + CP+
Sbjct: 430 PLLRSVANVIQQAGCPV 446
Score = 133 (51.9 bits), Expect = 3.5e-28, Sum P(3) = 3.5e-28
Identities = 29/91 (31%), Positives = 52/91 (57%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F + + + I L R+L ++PTGSGKTL++++PI+ L + RALV+ PTR
Sbjct: 93 FQLPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPTR 152
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 97
+LA Q+ I+ G + + + ++++A
Sbjct: 153 ELASQIHRELVKISEGTGFRIHM-IHKAAVA 182
Score = 69 (29.3 bits), Expect = 3.5e-28, Sum P(3) = 3.5e-28
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 129 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 184
DILV TP RL+ + G L + +LVVDE+D+L + ++ L ++ S
Sbjct: 195 DILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 254
Query: 185 ENRFSDASTF 194
R ++TF
Sbjct: 255 VKRAMFSATF 264
Score = 39 (18.8 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 93 QSSIADEISELIKRPKLEAGICYDPEDVLQE 123
Q ++ + +IK+P IC P+ L++
Sbjct: 454 QKLLSKQKKRMIKKPLERESICTTPKYFLEK 484
>UNIPROTKB|E2R316 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 Ensembl:ENSCAFT00000035837 Uniprot:E2R316
Length = 483
Score = 213 (80.0 bits), Expect = 5.7e-28, Sum P(2) = 5.7e-28
Identities = 60/200 (30%), Positives = 98/200 (49%)
Query: 226 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 279
+ SAT TQ+ L + L +P+ ++ E + K P RLE+Y ++C++ K LV
Sbjct: 200 LFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENYYMVCKADEKFNQLV 259
Query: 280 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 339
L++ +EK ++F S+ L + +KI G + R+K FR+
Sbjct: 260 HFLRNHKQEKHLIFFSTCACVEYYGKALEALVK-SVKIMCIHGKMKHK-RNKIFMEFRKL 317
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
+ +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G L E
Sbjct: 318 QSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARIGHGGSALVFLLPME- 376
Query: 400 KRFKKLLQKADNDSCPIHSI 419
+ + L+ N CP+ +
Sbjct: 377 ESYVTFLEI--NQKCPLQEM 394
Score = 170 (64.9 bits), Expect = 5.7e-28, Sum P(2) = 5.7e-28
Identities = 63/198 (31%), Positives = 96/198 (48%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR----ALVV 62
FP V TI + +D+ + TGSGKTL++ +PI++ L R + + A+++
Sbjct: 29 FPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKNQVGAIII 88
Query: 63 LPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
PTR+LA+QV +V A + S L +G + AD++S R K + G
Sbjct: 89 TPTRELAIQVDEVLAHFTKSFPQFSQILWIGGRNPADDVS----RFKEQGG--------- 135
Query: 122 QELQSAVDILVATPGRLMDHINA-TRGFTL----EHLCYLVVDETDRLLREAYQAWLPTV 176
+I+VATPGRL D G L + L LV+DE DRLL ++A + T+
Sbjct: 136 -------NIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEASINTI 188
Query: 177 LQ-LTRSDNENRFSDAST 193
L+ L + FS T
Sbjct: 189 LEFLPKQRRTGLFSATQT 206
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 222 (83.2 bits), Expect = 5.8e-28, Sum P(3) = 5.8e-28
Identities = 61/211 (28%), Positives = 108/211 (51%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SAT ++LAQ L P+ + G ++ ++ + K ++ LQS
Sbjct: 424 VMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQS 483
Query: 285 LGE-EKCIVFTS-SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+ +K IVF S + H L+ G I ++ G + Q R K L+ F+ GK++
Sbjct: 484 MSSTDKVIVFVSRKAVADHLSSDLI--LGN--ISVESLHGDREQRDREKALENFKTGKVR 539
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
+L+++D +RG+DV V +V N+D P I+ Y+HR GRT RAG+ G T L +++ +
Sbjct: 540 ILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVA 599
Query: 403 KKLLQKADNDSCPIHSIPSSLIESLRPVYKS 433
+L+ + + SIP L+ S+ +K+
Sbjct: 600 SELINILERAN---QSIPEELV-SMAERFKA 626
Score = 120 (47.3 bits), Expect = 5.8e-28, Sum P(3) = 5.8e-28
Identities = 24/75 (32%), Positives = 46/75 (61%)
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
++ ++EL+ VDI++ATPGRL D + + L+++ YLV+DE D++L ++ + +L
Sbjct: 356 DEQIEELKKGVDIIIATPGRLND-LQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKIL 414
Query: 178 QLTRSDNENRFSDAS 192
R D + + A+
Sbjct: 415 LDVRPDRQTVMTSAT 429
Score = 84 (34.6 bits), Expect = 5.8e-28, Sum P(3) = 5.8e-28
Identities = 33/109 (30%), Positives = 51/109 (46%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP-IVQTLSNRAVRCLR-- 58
G P+Q W + G+ DL + TG+GKTL Y +P + + +++ R
Sbjct: 261 GFQKPTPIQSQAWPIVL-QGI---DLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNR 316
Query: 59 --ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 105
LV+ PTR+LALQV+ + GL G + ++I EL K
Sbjct: 317 PGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIEELKK 364
>UNIPROTKB|Q9Y2R4 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AF077033 EMBL:AK001652 EMBL:AK093661 EMBL:AC091199
EMBL:BC041785 EMBL:AJ010840 IPI:IPI00032423 RefSeq:NP_008941.2
UniGene:Hs.590937 PDB:3DKP PDBsum:3DKP ProteinModelPortal:Q9Y2R4
SMR:Q9Y2R4 IntAct:Q9Y2R4 STRING:Q9Y2R4 PhosphoSite:Q9Y2R4
DMDM:296439375 SWISS-2DPAGE:Q9Y2R4 PaxDb:Q9Y2R4 PRIDE:Q9Y2R4
Ensembl:ENST00000349699 GeneID:11056 KEGG:hsa:11056 UCSC:uc002hoh.2
GeneCards:GC17M035969 HGNC:HGNC:20038 MIM:612500 neXtProt:NX_Q9Y2R4
PharmGKB:PA134904836 InParanoid:Q9Y2R4 PhylomeDB:Q9Y2R4
ChiTaRS:DDX52 EvolutionaryTrace:Q9Y2R4 GenomeRNAi:11056
NextBio:42007 ArrayExpress:Q9Y2R4 Bgee:Q9Y2R4 CleanEx:HS_DDX52
Genevestigator:Q9Y2R4 GermOnline:ENSG00000141141 Uniprot:Q9Y2R4
Length = 599
Score = 220 (82.5 bits), Expect = 6.3e-28, Sum P(3) = 6.3e-28
Identities = 59/194 (30%), Positives = 92/194 (47%)
Query: 224 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 283
+ + SAT D + +L+L + + ++ G R E +E L S+ L + L
Sbjct: 349 RAMFSATFAYDVEQWCKLNLDNVISVSIG-ARNSAVETVEQELLFVGSETGKLLAMRELV 407
Query: 284 SLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
G +VF S+E L L + G + + + Q+Q R T+ +FR GKI
Sbjct: 408 KKGFNPPVLVFVQSIERAKELFHELIYEG-INVDVIHAERTQQQ--RDNTVHSFRAGKIW 464
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 465 VLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLL 524
Query: 403 KKLLQKADNDSCPI 416
+ + CP+
Sbjct: 525 RSVANVIQQAGCPV 538
Score = 135 (52.6 bits), Expect = 6.3e-28, Sum P(3) = 6.3e-28
Identities = 29/91 (31%), Positives = 53/91 (58%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F + + + I L R+L ++PTGSGKTL++++PI+ L A + RAL++ PTR
Sbjct: 185 FQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTR 244
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 97
+LA Q+ I+ G + + + ++++A
Sbjct: 245 ELASQIHRELIKISEGTGFRIHM-IHKAAVA 274
Score = 69 (29.3 bits), Expect = 6.3e-28, Sum P(3) = 6.3e-28
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 129 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 184
DILV TP RL+ + G L + +LVVDE+D+L + ++ L ++ S
Sbjct: 287 DILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 346
Query: 185 ENRFSDASTF 194
R ++TF
Sbjct: 347 VRRAMFSATF 356
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 227 (85.0 bits), Expect = 8.4e-28, Sum P(3) = 8.4e-28
Identities = 59/190 (31%), Positives = 101/190 (53%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ +A+ +LAQ L P+ + G ++ ++ + K + LQS
Sbjct: 383 VMTTASWPDSTRRLAQSYLKQPMIVYVGTLDLVTVNTVKQNIIVTTEEEKRSLVKEFLQS 442
Query: 285 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
L ++K IVF S L + L+ G I ++ G + QS R + L+ FR G++++
Sbjct: 443 LSPKDKVIVFVSRKLVADDLSSDLSIQG---IPVQSLHGDREQSDRDQALEDFRTGRVKI 499
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK--- 400
L+++D RG+DV V +V NY+ P I+ Y+HR GRT RAG++G TL+ +D+ K
Sbjct: 500 LIATDLAARGLDVSDVTHVYNYNFPRNIEEYVHRVGRTGRAGKIGESITLVTQDDWKIAD 559
Query: 401 RFKKLLQKAD 410
K+LQ+A+
Sbjct: 560 ELIKILQRAN 569
Score = 109 (43.4 bits), Expect = 8.4e-28, Sum P(3) = 8.4e-28
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
+Q++ VDI++ATPGRL D + L + YLV+DE D++L ++ + +L
Sbjct: 318 IQDVTKGVDIIIATPGRLND-LQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDV 376
Query: 181 RSDNENRFSDAS 192
R D + + AS
Sbjct: 377 RPDRQTVMTTAS 388
Score = 86 (35.3 bits), Expect = 8.4e-28, Sum P(3) = 8.4e-28
Identities = 30/77 (38%), Positives = 39/77 (50%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP-IVQTLSNRAVRCLR-- 58
G P+Q W I G+ DL + TG+GKTLSY +P + S R R
Sbjct: 220 GFQKPTPIQSQSWP-IILQGI---DLIGIAQTGTGKTLSYLMPGFIHIHSQPVSRKQRNG 275
Query: 59 --ALVVLPTRDLALQVK 73
LV+ PTR+LALQV+
Sbjct: 276 PGMLVLTPTRELALQVE 292
>UNIPROTKB|Q8NHQ9 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
OMA:CACVEYW EMBL:AC055713 EMBL:AC117503 EMBL:BC030020 EMBL:AL833756
EMBL:AB046815 IPI:IPI00185361 RefSeq:NP_065987.1 UniGene:Hs.286173
ProteinModelPortal:Q8NHQ9 SMR:Q8NHQ9 STRING:Q8NHQ9
PhosphoSite:Q8NHQ9 DMDM:296439376 PaxDb:Q8NHQ9 PRIDE:Q8NHQ9
Ensembl:ENST00000238146 GeneID:57696 KEGG:hsa:57696 UCSC:uc001ufi.3
GeneCards:GC12P124086 HGNC:HGNC:20085 neXtProt:NX_Q8NHQ9
PharmGKB:PA134984021 InParanoid:Q8NHQ9 ChiTaRS:DDX55
GenomeRNAi:57696 NextBio:64547 ArrayExpress:Q8NHQ9 Bgee:Q8NHQ9
CleanEx:HS_DDX55 Genevestigator:Q8NHQ9 GermOnline:ENSG00000111364
Uniprot:Q8NHQ9
Length = 600
Score = 222 (83.2 bits), Expect = 8.8e-28, Sum P(2) = 8.8e-28
Identities = 67/220 (30%), Positives = 107/220 (48%)
Query: 226 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 279
+ SAT TQ+ L + L +P+ ++ E + K P RLE+Y ++C++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKFNQLV 259
Query: 280 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGL----QRQSVRSKTLK 334
L++ +EK +VF S+ C + ++G+ L + +K + + + R+K
Sbjct: 260 HFLRNHKQEKHLVFFST-------CACVEYYGKALEVLVKGVKIMCIHGKMKYKRNKIFM 312
Query: 335 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
FR+ + +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G L
Sbjct: 313 EFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFL 372
Query: 395 HKDEVKRFKKLLQKADNDSCPIHSI-PSSLIESLRPVYKS 433
E L A N CP+ + P L P KS
Sbjct: 373 LPMEESYINFL---AINQKCPLQEMKPQRNTADLLPKLKS 409
Score = 162 (62.1 bits), Expect = 8.8e-28, Sum P(2) = 8.8e-28
Identities = 59/197 (29%), Positives = 91/197 (46%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR----ALVV 62
FP V TI + +D+ + TGSGKTL++ +PI++ L R + + A+++
Sbjct: 29 FPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKSQVGAIII 88
Query: 63 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 122
PTR+LA+Q+ +V + E S+++ G EDV +
Sbjct: 89 TPTRELAIQIDEVLSHFTKHF--------------PEFSQILWIGGRNPG-----EDVER 129
Query: 123 ELQSAVDILVATPGRLMDHINA-TRGFTL----EHLCYLVVDETDRLLREAYQAWLPTVL 177
Q +I+VATPGRL D G L L LV+DE DRLL ++A + T+L
Sbjct: 130 FKQQGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTIL 189
Query: 178 Q-LTRSDNENRFSDAST 193
+ L + FS T
Sbjct: 190 EFLPKQRRTGLFSATQT 206
>UNIPROTKB|F1NEQ3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:AADN02016926
IPI:IPI00598837 Ensembl:ENSGALT00000019841 Uniprot:F1NEQ3
Length = 659
Score = 193 (73.0 bits), Expect = 1.1e-27, Sum P(3) = 1.1e-27
Identities = 65/213 (30%), Positives = 103/213 (48%)
Query: 205 IRRCGVERGFKD--KPYP-RLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP- 259
I G E K K P R M+ SAT T+ LA++ L PL++ + +
Sbjct: 325 ILEVGFEEEMKQIIKLLPKRRQTMLFSATQTRKVEDLAKISLKKEPLYVGVDDNKETATV 384
Query: 260 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE 319
+ LE ++C S+ + L L L+ ++K +VF SS S LLN+ + + +
Sbjct: 385 DGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNY---IDLPVLA 441
Query: 320 YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP--AYIKTYIHR 377
G Q+Q+ R+ T F + +L+ +D RG+D+ V+ +V YD P K YIHR
Sbjct: 442 IHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPEVDWIVQYDPPDDPKQKEYIHR 501
Query: 378 AGRTARA-GQLGRCFTLLHKDEVKRFKKLLQKA 409
GRTAR G +L +E+ F + L++A
Sbjct: 502 VGRTARGINGRGHALLILRPEELG-FLRYLKQA 533
Score = 131 (51.2 bits), Expect = 1.1e-27, Sum P(3) = 1.1e-27
Identities = 24/58 (41%), Positives = 41/58 (70%)
Query: 122 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
Q+L + ++I+VATPGRL+DH+ T GF ++L LV+DE DR+L ++ + +++L
Sbjct: 283 QKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQIIKL 340
Score = 104 (41.7 bits), Expect = 1.1e-27, Sum P(3) = 1.1e-27
Identities = 33/106 (31%), Positives = 55/106 (51%)
Query: 2 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLR 58
GIS + F + ++I P L RD+ + TGSGKTL++ +P V+ + R
Sbjct: 180 GISDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAFLIPAVELIYKLKFMPRNGT 239
Query: 59 ALVVL-PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
+++L PTR+LA+Q V + + GL +G S+ + E +L
Sbjct: 240 GVIILSPTRELAMQTYGVLKELMNHHVHTYGLIMGGSNRSAEAQKL 285
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 234 (87.4 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 69/220 (31%), Positives = 115/220 (52%)
Query: 225 MVLSATLTQDPNKLAQLDLHHP--LFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 282
++ SAT ++D LA LH+P + +T T ER+E + K L L+
Sbjct: 188 LLFSATFSKDITDLAGKLLHNPERIEVTPPNTTV---ERIEQRVFRLPASHKRALLAHLI 244
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+ E+ +VFT + +RL L+ G + I G + Q+ R+K L F+ G+++
Sbjct: 245 TAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIH---GNKSQNARTKALADFKAGEVR 301
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
+LV++D RG+D++ + +VVN++ P + Y+HR GRT RAG+ G +L+ DE K
Sbjct: 302 ILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLL 361
Query: 403 KKL----LQK-ADNDSCPIHSIPSSLIESLRP-VYKSGDV 436
K + QK AD D + +S +E+ +P V + DV
Sbjct: 362 KSIERMTKQKIADGD---LMGFDASAVEAEKPEVRERPDV 398
Score = 148 (57.2 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 62/191 (32%), Positives = 86/191 (45%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--------SNR-AVRCLRALVVL 63
V Q I L RDL + + TG+GKT +ALPI++ L S R R R LV+
Sbjct: 27 VQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQRHGPRQPRVLVLT 86
Query: 64 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 123
PTR+LA QV D F A + G G+ +P+ +Q
Sbjct: 87 PTRELAAQVHDSFKLYARDLKFVSACIFG-------------------GVGMNPQ--VQA 125
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
+ VD+LVA PGRL+D + L H+ LV+DE DR+L + + VL +
Sbjct: 126 MARGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAK 184
Query: 184 NENRFSDASTF 194
+N A TF
Sbjct: 185 RQNLLFSA-TF 194
>POMBASE|SPAC1006.07 [details] [associations]
symbol:SPAC1006.07 "translation initiation factor eIF4A
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002183
"cytoplasmic translational initiation" evidence=NAS] [GO:0003743
"translation initiation factor activity" evidence=ISO] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IC] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006413 "translational initiation" evidence=ISO] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1006.07 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0016281 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0002183 KO:K03257 OrthoDB:EOG4PG98F
EMBL:X80796 EMBL:L40627 PIR:S71745 RefSeq:NP_594854.1
ProteinModelPortal:P47943 SMR:P47943 STRING:P47943 PRIDE:P47943
EnsemblFungi:SPAC1006.07.1 GeneID:2542948 KEGG:spo:SPAC1006.07
OMA:PILEMED NextBio:20803983 Uniprot:P47943
Length = 392
Score = 195 (73.7 bits), Expect = 1.3e-27, Sum P(3) = 1.3e-27
Identities = 53/205 (25%), Positives = 99/205 (48%)
Query: 210 VERGFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
+ RGFKD+ Y P ++LSAT+ QD ++ + P+ + + L
Sbjct: 174 LSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIK 233
Query: 263 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 322
+ Y + + + K L L +++ + ++F ++ ++ L E + G
Sbjct: 234 QFYVAVEKEEWKLDTLCDLYETVTVTQAVIFCNT---RRKVDWLTEQLTERDFTVSSMHG 290
Query: 323 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 382
Q+ R + FR G ++L+++D + RG+DV+ V+ V+NYD PA + YIHR GR
Sbjct: 291 DMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGG 350
Query: 383 RAGQLGRCFTLLHKDEVKRFKKLLQ 407
R G+ G + D+V+ +++ Q
Sbjct: 351 RFGRKGVSINFVTNDDVRMMREIEQ 375
Score = 137 (53.3 bits), Expect = 1.3e-27, Sum P(3) = 1.3e-27
Identities = 27/92 (29%), Positives = 55/92 (59%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ Q I P L ERD+ + +G+GKT ++++ ++Q + +C +AL++ PTR+LA Q
Sbjct: 44 AIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQC-QALILAPTRELAQQ 102
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
++ V A+ + + +G + + D+++ L
Sbjct: 103 IQKVVVALGDLMNVECHACIGGTLVRDDMAAL 134
Score = 81 (33.6 bits), Expect = 1.3e-27, Sum P(3) = 1.3e-27
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
D + LQ+ V ++V TPGR+ D I R + + V+DE D +L ++ + + Q
Sbjct: 129 DDMAALQAGVHVVVGTPGRVHDMIQR-RALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQ 187
Query: 179 L 179
L
Sbjct: 188 L 188
>UNIPROTKB|F1P8J6 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969
EMBL:AAEX03014637 RefSeq:XP_543371.2 Ensembl:ENSCAFT00000011945
GeneID:486246 KEGG:cfa:486246 Uniprot:F1P8J6
Length = 599
Score = 213 (80.0 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 60/200 (30%), Positives = 98/200 (49%)
Query: 226 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 279
+ SAT TQ+ L + L +P+ ++ E + K P RLE+Y ++C++ K LV
Sbjct: 200 LFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENYYMVCKADEKFNQLV 259
Query: 280 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 339
L++ +EK ++F S+ L + +KI G + R+K FR+
Sbjct: 260 HFLRNHKQEKHLIFFSTCACVEYYGKALEALVK-SVKIMCIHGKMKHK-RNKIFMEFRKL 317
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
+ +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G L E
Sbjct: 318 QSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARIGHGGSALVFLLPME- 376
Query: 400 KRFKKLLQKADNDSCPIHSI 419
+ + L+ N CP+ +
Sbjct: 377 ESYVTFLEI--NQKCPLQEM 394
Score = 170 (64.9 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 63/198 (31%), Positives = 96/198 (48%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR----ALVV 62
FP V TI + +D+ + TGSGKTL++ +PI++ L R + + A+++
Sbjct: 29 FPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKNQVGAIII 88
Query: 63 LPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
PTR+LA+QV +V A + S L +G + AD++S R K + G
Sbjct: 89 TPTRELAIQVDEVLAHFTKSFPQFSQILWIGGRNPADDVS----RFKEQGG--------- 135
Query: 122 QELQSAVDILVATPGRLMDHINA-TRGFTL----EHLCYLVVDETDRLLREAYQAWLPTV 176
+I+VATPGRL D G L + L LV+DE DRLL ++A + T+
Sbjct: 136 -------NIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEASINTI 188
Query: 177 LQ-LTRSDNENRFSDAST 193
L+ L + FS T
Sbjct: 189 LEFLPKQRRTGLFSATQT 206
Score = 37 (18.1 bits), Expect = 7.8e-09, Sum P(2) = 7.8e-09
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 330 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366
++ LK F++GKI + + +G+ G V D
Sbjct: 557 TRLLKKFKKGKI----TEEEFEKGLFSSGKGTVTTAD 589
>UNIPROTKB|A4R715 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001234 GO:GO:0008026 eggNOG:COG0513 KO:K12614
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_003716556.1
GeneID:2676879 KEGG:mgr:MGG_03388 OrthoDB:EOG4QJVWF Uniprot:A4R715
Length = 535
Score = 201 (75.8 bits), Expect = 1.8e-27, Sum P(3) = 1.8e-27
Identities = 66/220 (30%), Positives = 104/220 (47%)
Query: 210 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER-LESYKLI 268
+E+ + P R V M+ SAT + + ++ +P + + +L R + Y
Sbjct: 210 IEQLLQFHPKDRQV-MLFSATFPISVKEFSDKNMTNPYEINLMD---ELTLRGITQYYAF 265
Query: 269 CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 328
E K K L L L + I+F +S T+R+ L EL +Q
Sbjct: 266 VEEKQKVHCLNTLFSKLQINQSIIFCNS---TNRVELLAKKITELGYSCFYSHAKMQQQA 322
Query: 329 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388
R++ FR G + LV SD +TRG+D++ VN V+N+D P +TY+HR GR+ R G LG
Sbjct: 323 RNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLG 382
Query: 389 RCFTLLHKDEVKRFKKLLQKADND-SCPIHSIPSSLIESL 427
L+ ++ RF L + D I IPS++ +SL
Sbjct: 383 LAINLISWED--RFN--LYNIERDLGTEIQPIPSTIDKSL 418
Score = 138 (53.6 bits), Expect = 1.8e-27, Sum P(3) = 1.8e-27
Identities = 31/104 (29%), Positives = 59/104 (56%)
Query: 1 MGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MGI F + +E+I L RD+ + G+GKT ++ +P ++T+ N V ++
Sbjct: 60 MGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVVPALETI-NPKVSKIQC 118
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
L+++PTR+LA+Q V + +G++V + G +++ D+I L
Sbjct: 119 LILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTTLRDDILRL 162
Score = 81 (33.6 bits), Expect = 1.8e-27, Sum P(3) = 1.8e-27
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
+D+L+ LQ V I+V TPGR++D + L ++DE D+LL + + +L
Sbjct: 157 DDILR-LQDPVHIVVGTPGRILD-LAGKNVADLSECPMFIMDEADKLLSIEFTPVIEQLL 214
Query: 178 QLTRSDNE 185
Q D +
Sbjct: 215 QFHPKDRQ 222
>CGD|CAL0006152 [details] [associations]
symbol:DHH1 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0030996 "cell cycle arrest
in response to nitrogen starvation" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IEA] [GO:0000753 "cell
morphogenesis involved in conjugation with cellular fusion"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0031142
"induction of conjugation upon nitrogen starvation" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0006152 GO:GO:0005524 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037 eggNOG:COG0513
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_718704.1
RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3 SMR:Q5AAW3
GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 202 (76.2 bits), Expect = 2.1e-27, Sum P(3) = 2.1e-27
Identities = 53/166 (31%), Positives = 83/166 (50%)
Query: 262 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 321
+ + E K K L L L + I+F +S T+R+ L EL
Sbjct: 242 ISQFYAFVEEKQKLHCLNTLFSKLQINQSIIFCNS---TNRVELLAKKITELGYSCYYSH 298
Query: 322 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 381
Q R+K FR+GK++ LV SD +TRG+D++ VN V+N+D P +TY+HR GR+
Sbjct: 299 AKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS 358
Query: 382 ARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESL 427
R G LG L+ ++ K+ Q+ + PI P+++ +SL
Sbjct: 359 GRFGHLGLAINLMSWNDRYSLYKIEQELGTEIKPI---PATIDKSL 401
Score = 135 (52.6 bits), Expect = 2.1e-27, Sum P(3) = 2.1e-27
Identities = 33/104 (31%), Positives = 56/104 (53%)
Query: 1 MGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MGI F + +E+I L RD+ + G+GKT S+ +P +Q + + + ++A
Sbjct: 43 MGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNK-VQA 101
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
L+++PTR+LALQ V + VG + G +S+ D+I L
Sbjct: 102 LILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIVRL 145
Score = 83 (34.3 bits), Expect = 2.1e-27, Sum P(3) = 2.1e-27
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
+D+++ L V ILV TPGR++D + A + L V+DE D++L ++ + +L
Sbjct: 140 DDIVR-LHDPVHILVGTPGRVLD-LAARKVVDLSECPLFVMDEADKMLSREFKGIIEQIL 197
Query: 178 QLTRSDNENRFSDASTFLPSAFGS 201
+ N ++TF P A S
Sbjct: 198 EFF-PPNRQALLFSATF-PLAVKS 219
>UNIPROTKB|Q5AAW3 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:237561 "Candida albicans SC5314" [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0006152 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_718704.1 RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3
SMR:Q5AAW3 GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 202 (76.2 bits), Expect = 2.1e-27, Sum P(3) = 2.1e-27
Identities = 53/166 (31%), Positives = 83/166 (50%)
Query: 262 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 321
+ + E K K L L L + I+F +S T+R+ L EL
Sbjct: 242 ISQFYAFVEEKQKLHCLNTLFSKLQINQSIIFCNS---TNRVELLAKKITELGYSCYYSH 298
Query: 322 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 381
Q R+K FR+GK++ LV SD +TRG+D++ VN V+N+D P +TY+HR GR+
Sbjct: 299 AKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS 358
Query: 382 ARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESL 427
R G LG L+ ++ K+ Q+ + PI P+++ +SL
Sbjct: 359 GRFGHLGLAINLMSWNDRYSLYKIEQELGTEIKPI---PATIDKSL 401
Score = 135 (52.6 bits), Expect = 2.1e-27, Sum P(3) = 2.1e-27
Identities = 33/104 (31%), Positives = 56/104 (53%)
Query: 1 MGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MGI F + +E+I L RD+ + G+GKT S+ +P +Q + + + ++A
Sbjct: 43 MGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNK-VQA 101
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
L+++PTR+LALQ V + VG + G +S+ D+I L
Sbjct: 102 LILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIVRL 145
Score = 83 (34.3 bits), Expect = 2.1e-27, Sum P(3) = 2.1e-27
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
+D+++ L V ILV TPGR++D + A + L V+DE D++L ++ + +L
Sbjct: 140 DDIVR-LHDPVHILVGTPGRVLD-LAARKVVDLSECPLFVMDEADKMLSREFKGIIEQIL 197
Query: 178 QLTRSDNENRFSDASTFLPSAFGS 201
+ N ++TF P A S
Sbjct: 198 EFF-PPNRQALLFSATF-PLAVKS 219
>UNIPROTKB|F1RFL5 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969 OMA:CACVEYW
EMBL:CU468658 RefSeq:XP_001927747.2 UniGene:Ssc.4554
UniGene:Ssc.95961 Ensembl:ENSSSCT00000010713 GeneID:100157342
KEGG:ssc:100157342 Uniprot:F1RFL5
Length = 600
Score = 219 (82.2 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 64/206 (31%), Positives = 105/206 (50%)
Query: 226 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 279
+ SAT TQ+ L + L +P+ ++ E + K P RLE+Y ++C++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGAAASSTQKTPSRLENYYMVCKADEKFNQLV 259
Query: 280 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE-----LR-IKIKEYSGLQRQSVRSKTL 333
L++ +EK +VF S+ C + ++G+ +R +KI G + R+K
Sbjct: 260 HFLRNHKQEKHLVFFST-------CACVEYYGKALEALVRSVKIMCIHGKMKYK-RNKIF 311
Query: 334 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
FR+ + +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G
Sbjct: 312 MEFRQLQSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARIGHGGSALVF 371
Query: 394 LHKDEVKRFKKLLQKADNDSCPIHSI 419
L E + + L A N CP+ ++
Sbjct: 372 LLPME-ESYVNFL--AINQKCPLQAM 394
Score = 161 (61.7 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 61/198 (30%), Positives = 94/198 (47%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR----ALVV 62
FP V TI + +D+ + TGSGKTL++ +PI++ L R + + A+++
Sbjct: 29 FPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKSQVGAIII 88
Query: 63 LPTRDLALQVKDVFAAIA-PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
PTR+LA+Q+ +V + P S L +G + P G EDV
Sbjct: 89 TPTRELAVQIDEVLSHFTKPFPQFSQILWIGG-----------RNP----G-----EDVA 128
Query: 122 QELQSAVDILVATPGRLMDHINA-TRGFTL----EHLCYLVVDETDRLLREAYQAWLPTV 176
+ + +I+VATPGRL D G L + L LV+DE DRLL ++A + T+
Sbjct: 129 RFKEHGGNIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTI 188
Query: 177 LQ-LTRSDNENRFSDAST 193
L+ L + FS T
Sbjct: 189 LEFLPKQRRTGLFSATQT 206
>UNIPROTKB|E2RB54 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:ERESINT
EMBL:AAEX03006616 Ensembl:ENSCAFT00000028820 Uniprot:E2RB54
Length = 601
Score = 219 (82.2 bits), Expect = 2.9e-27, Sum P(3) = 2.9e-27
Identities = 59/194 (30%), Positives = 92/194 (47%)
Query: 224 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 283
+ + SAT D + +L+L + + ++ G R E +E L S+ L + L
Sbjct: 351 RAMFSATFAYDVEQWCKLNLDNVITVSIG-ARNSAVETVEQELLFVGSETGKLLAMRELV 409
Query: 284 SLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
G +VF S+E L L + G + + + Q+Q R T+ +FR GKI
Sbjct: 410 KKGFNPPVLVFVQSIERAKELFHELIYEG-INVDVIHADRTQQQ--RDNTVHSFRAGKIW 466
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 467 VLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLL 526
Query: 403 KKLLQKADNDSCPI 416
+ + CP+
Sbjct: 527 RSVANVIQQAGCPV 540
Score = 130 (50.8 bits), Expect = 2.9e-27, Sum P(3) = 2.9e-27
Identities = 28/91 (30%), Positives = 51/91 (56%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F + + I L R+L ++PTGSGKTL++++PI+ L + RAL++ PTR
Sbjct: 187 FQTPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALIISPTR 246
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 97
+LA Q+ I+ G + + + ++++A
Sbjct: 247 ELANQIHRELVKISEGTGFRIHM-IHKAAVA 276
Score = 69 (29.3 bits), Expect = 2.9e-27, Sum P(3) = 2.9e-27
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 129 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 184
DILV TP RL+ + G L + +LVVDE+D+L + ++ L ++ S
Sbjct: 289 DILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 348
Query: 185 ENRFSDASTF 194
R ++TF
Sbjct: 349 VRRAMFSATF 358
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 246 (91.7 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 60/196 (30%), Positives = 105/196 (53%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY-KLICESKLKPL-YLVALL 282
M+ SAT+T + L ++ L+ P+ L + + + + +L + K + YLV L
Sbjct: 436 MLFSATMTSSVDNLIRVGLNKPVRLMVDSQKKTVVTLTQEFVRLRPGREEKRMGYLVYLC 495
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
++L E+ I+F + H + FG L + E G Q R ++++AFR+GK+
Sbjct: 496 KNLYTERVIIFFRQKKIAHHARII---FGLLGLSCAELHGSMSQIQRIQSVEAFRDGKVS 552
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
L+++D +RG+D++GV+ V+NY+ P ++ Y+HR GRTARAG+ G TL + + K
Sbjct: 553 FLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAEPDRKVV 612
Query: 403 KKLLQKADNDSCPIHS 418
K ++ I S
Sbjct: 613 KAAVKAGKAQGAKISS 628
Score = 134 (52.2 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 41/136 (30%), Positives = 69/136 (50%)
Query: 2 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLR 58
G++S+ F + +TI L +D+ + TGSGKT ++ +PI++ L R V R
Sbjct: 269 GLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTSR 328
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 118
+++ PTR+LA+Q V +A + LAVG S+ + SEL RP + I P
Sbjct: 329 VVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELRLRPDV---IIATPG 385
Query: 119 DVLQELQSAVDILVAT 134
+ ++++ V T
Sbjct: 386 RFIDHMRNSASFAVDT 401
Score = 111 (44.1 bits), Expect = 7.8e-25, Sum P(2) = 7.8e-25
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 123 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTR 181
EL+ D+++ATPGR +DH+ + F ++ + LV+DE DR+L + + L +L L +
Sbjct: 372 ELRLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLPK 431
Query: 182 SDNENRFSDAST 193
S FS T
Sbjct: 432 SRQTMLFSATMT 443
>POMBASE|SPBC543.06c [details] [associations]
symbol:dbp8 "ATP-dependent RNA helicase Dbp8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC543.06c GO:GO:0005524 GO:GO:0005730
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW
RefSeq:NP_596794.1 ProteinModelPortal:Q9HGM5 STRING:Q9HGM5
EnsemblFungi:SPBC543.06c.1 GeneID:2541069 KEGG:spo:SPBC543.06c
NextBio:20802183 Uniprot:Q9HGM5
Length = 453
Score = 195 (73.7 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 54/181 (29%), Positives = 94/181 (51%)
Query: 225 MVLSATLTQDPNKLA---QLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVA 280
++ +AT+T +L Q + PL+L ET +P L+ + S+++ YLV
Sbjct: 190 LLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVREAYLVH 249
Query: 281 LLQ--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 338
LL ++ I+F + + + ++L ELR+ +QR+ + S L FR
Sbjct: 250 LLTIPENAKKSAIIFVNRTRTAELIYSILRLL-ELRVTELHSEMVQRERINS--LGRFRA 306
Query: 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
++LV++D +RG+D+ V V+N+D P YIHR GRTARAG+ G +++ + +
Sbjct: 307 EAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERD 366
Query: 399 V 399
V
Sbjct: 367 V 367
Score = 140 (54.3 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 35/94 (37%), Positives = 55/94 (58%)
Query: 15 QETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 73
QE + + E CI + TGSGKT ++ALPI++ S + + AL++ PTR+LA+Q+
Sbjct: 34 QEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWS-KDPSGIFALILTPTRELAIQID 92
Query: 74 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 107
+ FAA+ + L L VG + + +L KRP
Sbjct: 93 EQFAALGANLNLKHALIVGGMDMIRQSIDLSKRP 126
Score = 79 (32.9 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 123 ELQSAVDILVATPGRLMDHINATRGFT---LEHLCYLVVDETDRLLREAY 169
+L ++VATPGRL D I + T L + +LV+DE DRLL +
Sbjct: 121 DLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTF 170
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 241 (89.9 bits), Expect = 3.5e-27, Sum P(2) = 3.5e-27
Identities = 66/195 (33%), Positives = 104/195 (53%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV---AL 281
M+ SATL + LA+L L P+ + + ++ LE + + K+KP +L A+
Sbjct: 371 MLFSATLNDEVKTLAKLSLQQPIRVQV-DALMQVTSTLEQ-EFV---KIKPQHLSDRPAI 425
Query: 282 LQSL-----GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 336
L SL + I+F S + HRL + FG +K E G Q R +L+ F
Sbjct: 426 LLSLCTRVFNQGGTIIFCRSKKEVHRLRII---FGLSDLKAAELHGNLSQEQRFDSLQQF 482
Query: 337 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 396
R+G++ L++SD +RG+D+ GV V+NY+ P + YIHR GRTARAG G+ + +
Sbjct: 483 RDGQVNYLLASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITD 542
Query: 397 DEVKRFKKLLQKADN 411
++ K K ++ KA N
Sbjct: 543 NDRKLLKDIVTKARN 557
Score = 139 (54.0 bits), Expect = 3.5e-27, Sum P(2) = 3.5e-27
Identities = 40/110 (36%), Positives = 62/110 (56%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLR 58
+G S P+Q + I L +D+ ++ TGSGKT ++ LP+++ L R R +R
Sbjct: 208 LGFSQPTPIQA----KAIPLALNGKDILASASTGSGKTAAFLLPVLERLLFRDSEYRAIR 263
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ-SSIADEISELIKRP 107
L++LPTR+LALQ + V +A ++ L VG S+ A E+ EL K P
Sbjct: 264 VLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEV-ELRKSP 312
Score = 41 (19.5 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 354 MDVEGVNNVVNYDKPAYIKT-YIHRAGRTARAGQLGRCFTLLHKDEVKR 401
+DV GVNNV + K K Y + + R Q F ++E KR
Sbjct: 654 IDVTGVNNVPSIKKLKQKKDPYYGLSRKQRRHRQFKEEFEREQQEERKR 702
>ZFIN|ZDB-GENE-021212-1 [details] [associations]
symbol:ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
55" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021212-1 GO:GO:0007275 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AF506203 EMBL:BC059534 IPI:IPI00493927 RefSeq:NP_775336.1
UniGene:Dr.16883 ProteinModelPortal:Q8JHJ2 STRING:Q8JHJ2
GeneID:286745 KEGG:dre:286745 InParanoid:Q8JHJ2 NextBio:20806420
ArrayExpress:Q8JHJ2 Uniprot:Q8JHJ2
Length = 593
Score = 229 (85.7 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
Identities = 68/208 (32%), Positives = 103/208 (49%)
Query: 226 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 279
+ SAT TQ+ KL + L +P+ +T E + K P +L +Y +C ++ K LV
Sbjct: 200 LFSATQTQELEKLVRAGLRNPVRITVKEKGVAASSVQKTPAKLSNYYTMCRAEEKFNTLV 259
Query: 280 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYS-----GLQRQSVRSKTL 333
A L+ EK +VF S+ C + +FG+ L + +K S G + R+K
Sbjct: 260 AFLRQHKHEKQLVFFST-------CACVEYFGKALEVLVKNVSIHCIHGKMKHK-RNKIF 311
Query: 334 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
FR K +LV +D M RG+D+ VN V+ YD P+ +++HR GRTAR G G
Sbjct: 312 ADFRALKSGILVCTDVMARGIDIPEVNWVLQYDPPSSASSFVHRCGRTARIGNQGNALVF 371
Query: 394 LHKDEVKRFKKLLQKADNDSCPIHSIPS 421
L E + + L + N CP+ S S
Sbjct: 372 LLPME-ESYVNFL--SINQKCPLQSFSS 396
Score = 148 (57.2 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
Identities = 59/204 (28%), Positives = 96/204 (47%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-- 58
+G + + PVQ A I + +D+ + TGSGKTL++ +P ++ L R + +
Sbjct: 27 LGFTYMTPVQSAC----IPLFMSNKDVAAEAVTGSGKTLAFVIPALEILLKREEKLKKMQ 82
Query: 59 --ALVVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIADEISELIKRPKLEAGICY 115
AL++ PTR+LA+Q+ +V + L +G S+ +++ +L
Sbjct: 83 VGALIITPTRELAMQISEVMGRFLQGFPQFTQILLIGGSNPIEDVEKL------------ 130
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATR-GFTL----EHLCYLVVDETDRLLREAYQ 170
+ Q A +I++ATPGRL D G L + L LV+DE DRLL ++
Sbjct: 131 -------KTQGA-NIIIATPGRLEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFE 182
Query: 171 AWLPTVL-QLTRSDNENRFSDAST 193
A L T+L L + FS T
Sbjct: 183 ASLNTILGYLPKQRRTGLFSATQT 206
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 202 (76.2 bits), Expect = 3.9e-27, Sum P(3) = 3.9e-27
Identities = 57/177 (32%), Positives = 92/177 (51%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SATL + + A+ L P+ + + KL E+L++ L+ K L+ LLQ+
Sbjct: 274 VLFSATLPKLLVEFARAGLTEPVLIRL-DVDSKLNEQLKTSFLLVREDTKAAVLLYLLQN 332
Query: 285 L--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+ +++ +VF ++ L LL G I YS L Q+ R L F K
Sbjct: 333 VVRPQDQTVVFVATKHHAEYLTELLMGQGVSCAHI--YSALD-QTARKINLAKFTHNKCS 389
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
L+ +D RG+D+ ++NV+NY PA K ++HR GR ARAG+ G ++L+ DEV
Sbjct: 390 TLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEV 446
Score = 131 (51.2 bits), Expect = 3.9e-27, Sum P(3) = 3.9e-27
Identities = 32/104 (30%), Positives = 54/104 (51%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPT 65
+ V + ++TI L +D+ + TGSGKT + LP+ + L R+ + RAL++ PT
Sbjct: 115 YKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKARSAQTGARALILSPT 174
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
R+LALQ + GL L +G + D+ + L + P +
Sbjct: 175 RELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDI 218
Score = 94 (38.1 bits), Expect = 3.9e-27, Sum P(3) = 3.9e-27
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
ED L DI++ATPGRL+ H+ L+ + Y+V DE DRL + L ++
Sbjct: 206 EDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEII 264
Score = 43 (20.2 bits), Expect = 4.4e-10, Sum P(3) = 4.4e-10
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 349 AMTRGMDVEGVNNVVNYDKPAYIKT 373
AM +D++G++ V N + Y+++
Sbjct: 499 AMGASLDLQGLHRVANNAQQQYVRS 523
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 198 (74.8 bits), Expect = 4.2e-27, Sum P(3) = 4.2e-27
Identities = 48/182 (26%), Positives = 93/182 (51%)
Query: 220 PRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 278
P V+ +L SATL++ +LA+ + P ++ + + + + + K L
Sbjct: 176 PSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQAS-KSNISQWLITVDKDTKSALL 234
Query: 279 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 338
L+ ++ ++F +E+ H L++ + I + + + Q++R++ L+ F+
Sbjct: 235 SHLINEQQWDQALIF---IETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKS 291
Query: 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
GKI+ LV++ RG+D++ ++ VVNYD P Y+HR GRT RA +G + + KD
Sbjct: 292 GKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDN 351
Query: 399 VK 400
K
Sbjct: 352 FK 353
Score = 112 (44.5 bits), Expect = 4.2e-27, Sum P(3) = 4.2e-27
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTL---SNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81
RDL + TG+GKT S+ LPI++ L + + +RAL+++PTR+LA+QV +
Sbjct: 39 RDLIAAAQTGTGKTASFVLPILEKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGK 98
Query: 82 AVGLSVGLAV 91
GL LAV
Sbjct: 99 DTGLK-SLAV 107
Score = 98 (39.6 bits), Expect = 4.2e-27, Sum P(3) = 4.2e-27
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 165
D + Q L VD+LVATPGRLMD + R E + +V+DE DR+L
Sbjct: 112 DEQAQKQRLIDGVDVLVATPGRLMD-LYGQRAVYFEEIEMVVLDEADRML 160
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 198 (74.8 bits), Expect = 4.2e-27, Sum P(3) = 4.2e-27
Identities = 48/182 (26%), Positives = 93/182 (51%)
Query: 220 PRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 278
P V+ +L SATL++ +LA+ + P ++ + + + + + K L
Sbjct: 176 PSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQAS-KSNISQWLITVDKDTKSALL 234
Query: 279 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 338
L+ ++ ++F +E+ H L++ + I + + + Q++R++ L+ F+
Sbjct: 235 SHLINEQQWDQALIF---IETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKS 291
Query: 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
GKI+ LV++ RG+D++ ++ VVNYD P Y+HR GRT RA +G + + KD
Sbjct: 292 GKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDN 351
Query: 399 VK 400
K
Sbjct: 352 FK 353
Score = 112 (44.5 bits), Expect = 4.2e-27, Sum P(3) = 4.2e-27
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTL---SNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81
RDL + TG+GKT S+ LPI++ L + + +RAL+++PTR+LA+QV +
Sbjct: 39 RDLIAAAQTGTGKTASFVLPILEKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGK 98
Query: 82 AVGLSVGLAV 91
GL LAV
Sbjct: 99 DTGLK-SLAV 107
Score = 98 (39.6 bits), Expect = 4.2e-27, Sum P(3) = 4.2e-27
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 165
D + Q L VD+LVATPGRLMD + R E + +V+DE DR+L
Sbjct: 112 DEQAQKQRLIDGVDVLVATPGRLMD-LYGQRAVYFEEIEMVVLDEADRML 160
>UNIPROTKB|A5D7C1 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:BC140501 IPI:IPI00692860
RefSeq:NP_001096708.1 UniGene:Bt.51117 ProteinModelPortal:A5D7C1
SMR:A5D7C1 PRIDE:A5D7C1 Ensembl:ENSBTAT00000013622 GeneID:510826
KEGG:bta:510826 CTD:11056 GeneTree:ENSGT00550000074863
HOGENOM:HOG000242486 HOVERGEN:HBG051332 InParanoid:A5D7C1 KO:K14779
OMA:NVMKQSG OrthoDB:EOG4XKV6Q NextBio:20869637 ArrayExpress:A5D7C1
Uniprot:A5D7C1
Length = 596
Score = 219 (82.2 bits), Expect = 4.4e-27, Sum P(3) = 4.4e-27
Identities = 59/197 (29%), Positives = 93/197 (47%)
Query: 221 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA 280
++ + + SAT D + +L+L + ++ G R E +E L S+ L +
Sbjct: 344 KVKRAMFSATFAYDVEQWCRLNLDSVITVSVG-ARNSAVETVEQELLFVGSETGKLLAMR 402
Query: 281 LLQSLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 339
L G +VF S+E L L + G + + + Q+Q R T+ +FR G
Sbjct: 403 ELVKKGFNPPVLVFVQSIERAKELFHELIYEG-INVDVIHADRTQQQ--RDNTVHSFRAG 459
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
KI VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 460 KIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDK 519
Query: 400 KRFKKLLQKADNDSCPI 416
+ + CP+
Sbjct: 520 PLLRSVANVIQQAGCPV 536
Score = 128 (50.1 bits), Expect = 4.4e-27, Sum P(3) = 4.4e-27
Identities = 27/91 (29%), Positives = 51/91 (56%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F + + I L R+L ++PTGSGKTL++++PI+ L + RAL++ PTR
Sbjct: 183 FQTPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMHLKQPTNKGFRALIISPTR 242
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 97
+LA Q+ ++ G + + + ++++A
Sbjct: 243 ELASQIHRELVKLSEGTGFRIHM-IHKAAVA 272
Score = 69 (29.3 bits), Expect = 4.4e-27, Sum P(3) = 4.4e-27
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 129 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 184
DILV TP RL+ + G L + +LVVDE+D+L + ++ L ++ S
Sbjct: 285 DILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 344
Query: 185 ENRFSDASTF 194
R ++TF
Sbjct: 345 VKRAMFSATF 354
>RGD|2324094 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:2324094
GO:GO:0005524 GO:GO:0003723 EMBL:CH473973 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 CTD:57696 KO:K14809
OrthoDB:EOG4WH8KN GeneTree:ENSGT00550000074969 IPI:IPI00370890
RefSeq:NP_001258255.1 UniGene:Rn.209289 Ensembl:ENSRNOT00000001387
GeneID:100362764 KEGG:rno:100362764 UCSC:RGD:2324094 Uniprot:D3ZX56
Length = 600
Score = 221 (82.9 bits), Expect = 4.9e-27, Sum P(2) = 4.9e-27
Identities = 64/200 (32%), Positives = 99/200 (49%)
Query: 226 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 279
+ SAT TQ+ L + L +P+ ++ E + K P RLE++ +IC++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKFNQLV 259
Query: 280 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 339
L+S +EK +VF S+ L + R+KI G + R+K FR+
Sbjct: 260 HFLRSRQQEKHLVFFSTCACVEYYGKALEALVQ-RVKILCIHGKMKYK-RNKIFMEFRKL 317
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
+ +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G L E
Sbjct: 318 QSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPME- 376
Query: 400 KRFKKLLQKADNDSCPIHSI 419
+ + L A N CP+ +
Sbjct: 377 EAYINFL--AINQKCPLQEM 394
Score = 156 (60.0 bits), Expect = 4.9e-27, Sum P(2) = 4.9e-27
Identities = 61/203 (30%), Positives = 96/203 (47%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-- 58
+G + PVQ A TI + +D+ + TGSGKTL++ +PI++ L R + +
Sbjct: 27 LGFLHMTPVQSA----TIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKNQ 82
Query: 59 --ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 116
A+V+ PTR+LA+Q+ +V + + S+++ G
Sbjct: 83 VGAIVITPTRELAIQIDEVLSHFTKHF--------------PQFSQILWIGGRNPG---- 124
Query: 117 PEDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHLCYLVVDETDRLLREAYQA 171
EDV + Q +I+VATPGRL D G L + L LV+DE DRLL ++A
Sbjct: 125 -EDVERFKQHGGNIIVATPGRLEDMFRRKAEGLDLASYVKSLDVLVLDEADRLLDMGFEA 183
Query: 172 WLPTVLQ-LTRSDNENRFSDAST 193
+ T+L+ L + FS T
Sbjct: 184 SINTILEFLPKQRRTGLFSATQT 206
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 245 (91.3 bits), Expect = 5.6e-27, Sum P(2) = 5.6e-27
Identities = 62/182 (34%), Positives = 102/182 (56%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL--ESYKLICESKLKPL-YLVAL 281
M+ SAT+T +KL ++ L+ P+ L +T+ L E +L + K L YL+ L
Sbjct: 479 MLFSATMTDSVDKLIRVGLNRPVRLMV-DTKKNTAVTLVQEFVRLRPGREDKRLGYLLHL 537
Query: 282 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 341
+ + + IVF + HR+ + FG L +K E G Q R K++++FR+G +
Sbjct: 538 CKEVYTGRVIVFFRQKKEAHRVRIV---FGLLGLKAAELHGSMSQEQRIKSVESFRDGNV 594
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
L+++D +RG+D++GV V+NY+ P + Y+HR GRTARAG+ GR T+ + + K
Sbjct: 595 NFLLATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRKV 654
Query: 402 FK 403
K
Sbjct: 655 VK 656
Score = 133 (51.9 bits), Expect = 5.6e-27, Sum P(2) = 5.6e-27
Identities = 38/136 (27%), Positives = 72/136 (52%)
Query: 2 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLR 58
G++++ F + Q+TI L +D+ ++ TGSGKT ++ +PI++ L R V R
Sbjct: 312 GLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSR 371
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 118
+++PTR+LA+Q +V +A ++ VG S+ ++ + L KRP + I P
Sbjct: 372 VAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKKRPDV---IIATPG 428
Query: 119 DVLQELQSAVDILVAT 134
+ ++++ V T
Sbjct: 429 RFIDHMRNSASFTVDT 444
Score = 114 (45.2 bits), Expect = 5.4e-25, Sum P(2) = 5.4e-25
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRS 182
L+ D+++ATPGR +DH+ + FT++ L LV+DE DR+L + + L +L + +S
Sbjct: 416 LKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKS 475
Query: 183 DNENRFSDAST 193
FS T
Sbjct: 476 RQTMLFSATMT 486
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 192 (72.6 bits), Expect = 5.7e-27, Sum P(3) = 5.7e-27
Identities = 53/184 (28%), Positives = 86/184 (46%)
Query: 215 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLK 274
K+ P R + SAT+ + LA L +P ++ R+E E K
Sbjct: 180 KNVPSKRQT-LFFSATMPKAVESLAATFLRNPAEVSVAPPA-TTAGRIEQRVCFVEQPEK 237
Query: 275 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 334
L+ ++ IVFT + H ++ + I G + QS R K L+
Sbjct: 238 ASLLIEKIRDPELRSAIVFT---RTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALE 294
Query: 335 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
AF+ G++ +LV++D RG+ V+ + +V+NYD P + ++HR GRTARAG G +
Sbjct: 295 AFKAGRVPILVATDIAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFC 354
Query: 395 HKDE 398
+DE
Sbjct: 355 SRDE 358
Score = 127 (49.8 bits), Expect = 5.7e-27, Sum P(3) = 5.7e-27
Identities = 35/94 (37%), Positives = 51/94 (54%)
Query: 15 QETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRA----VRCLRALVVLPTRDLA 69
QE P + + RD+ + TG+GKTL++A PI+ LS A VR R LV+ PTR+LA
Sbjct: 34 QEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDRLSRNASPAPVRGTRVLVLAPTRELA 93
Query: 70 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
Q+ F + L V + G + I +I +L
Sbjct: 94 GQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQL 127
Score = 94 (38.1 bits), Expect = 5.7e-27, Sum P(3) = 5.7e-27
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
+++L+ ILVATPGRL+D + R +L+ + L++DE D++L + L + +
Sbjct: 124 IRQLERGAHILVATPGRLID-LMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNV 182
Query: 181 RSDNENRFSDASTFLPSAFGSL 202
S + F A+ +P A SL
Sbjct: 183 PSKRQTLFFSAT--MPKAVESL 202
Score = 46 (21.3 bits), Expect = 4.8e-11, Sum P(3) = 4.8e-11
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 404 KLLQKADNDSCPIHSIPS-SLIESLRPVYKSGDV 436
K L KAD DS IH S S E +K+G V
Sbjct: 268 KRLAKADIDSVAIHGNKSQSQREKALEAFKAGRV 301
>WB|WBGene00021277 [details] [associations]
symbol:Y23H5B.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003723 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 GeneTree:ENSGT00550000074980 OMA:ADKVIEP
HSSP:P10081 EMBL:FO080963 RefSeq:NP_490989.1
ProteinModelPortal:Q9N478 SMR:Q9N478 STRING:Q9N478 PaxDb:Q9N478
EnsemblMetazoa:Y23H5B.6 GeneID:171810 KEGG:cel:CELE_Y23H5B.6
UCSC:Y23H5B.6 CTD:171810 WormBase:Y23H5B.6 InParanoid:Q9N478
NextBio:872791 Uniprot:Q9N478
Length = 732
Score = 201 (75.8 bits), Expect = 5.9e-27, Sum P(3) = 5.9e-27
Identities = 56/198 (28%), Positives = 99/198 (50%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL-PERLESYKLICESKLKPLYLVALLQ 283
++ SAT T++ L ++ + P+F++ E P+ L+ +I E + K L + ++
Sbjct: 257 LLFSATQTRNVKDLCRVCTNDPVFVSVHENASAATPDNLKQSYVIVEEEHKINALWSFIE 316
Query: 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKI 341
+ ++K +VF SS + R T F +LR + + G Q R +T F E K
Sbjct: 317 AHRKKKSLVFVSSCKQA-RFLT--EAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDESKA 373
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
VL+++D +RG+D E ++ V+ D PA I YIHR GR+AR G ++ + +
Sbjct: 374 AVLIATDVASRGLDFEHIDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLLMVSPSQEEA 433
Query: 402 FKKLLQKADNDSCPIHSI 419
++ K + S PI +
Sbjct: 434 ---MIGKLEKHSIPIEEL 448
Score = 124 (48.7 bits), Expect = 5.9e-27, Sum P(3) = 5.9e-27
Identities = 34/91 (37%), Positives = 50/91 (54%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC----LRALVVLPTRDL 68
+ ++TI L D+ + TGSGKTL+ +P+++ L RA L AL++ PTR+L
Sbjct: 102 IQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEALW-RAKWSPDYGLGALIISPTREL 160
Query: 69 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 99
ALQ A+ G S GL +G S +A E
Sbjct: 161 ALQTFSTINAVGAHHGFSCGLVIGGSDVAFE 191
Score = 97 (39.2 bits), Expect = 5.9e-27, Sum P(3) = 5.9e-27
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 112 GICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 169
G+ DV E S ++I+V TPGRL+ H++ + + L LV+DE DR+L +
Sbjct: 180 GLVIGGSDVAFERNRISGINIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGF 239
Query: 170 QAWLPTVLQLTRSDNENR-FSDAST 193
L +++ ++ + FS T
Sbjct: 240 SKQLNSIINNLPAERQTLLFSATQT 264
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 183 (69.5 bits), Expect = 6.5e-27, Sum P(3) = 6.5e-27
Identities = 46/136 (33%), Positives = 79/136 (58%)
Query: 280 ALLQS-LGEEKC---IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 335
ALLQ L EK I+FT++ T RL LL E + SG Q R++ +++
Sbjct: 235 ALLQHFLVTEKSQQIIIFTATRSDTDRLAKLLT---EQNLNAVALSGELNQGQRNQIMES 291
Query: 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395
F +G+ ++LV++D +RG+D+ V++V+N+D P + + ++HR GRT RAG G +L+
Sbjct: 292 FSKGQHKILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVG 351
Query: 396 KDE---VKRFKKLLQK 408
++ +K + LQ+
Sbjct: 352 PNDWLSLKNVEAFLQQ 367
Score = 133 (51.9 bits), Expect = 6.5e-27, Sum P(3) = 6.5e-27
Identities = 38/111 (34%), Positives = 57/111 (51%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRAV--RCL 57
MG + P Q+ Q+ I + DL +S TGSGKTL++ +P +Q LS NRA+ R
Sbjct: 19 MGFNE--PTQIQ--QQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRLSKNRALSKRDP 74
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 108
R +++ PTR+LA QV L +G + D++ L K P+
Sbjct: 75 RVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQKEPE 125
Score = 97 (39.2 bits), Expect = 6.5e-27, Sum P(3) = 6.5e-27
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLL 165
D ++ LQ + +VATPGRL DH+ T+G F L L L++DE DR+L
Sbjct: 115 DQVKVLQKEPEFIVATPGRLADHL--TQGHFHLNGLELLILDEADRML 160
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 183 (69.5 bits), Expect = 6.5e-27, Sum P(3) = 6.5e-27
Identities = 46/136 (33%), Positives = 79/136 (58%)
Query: 280 ALLQS-LGEEKC---IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 335
ALLQ L EK I+FT++ T RL LL E + SG Q R++ +++
Sbjct: 235 ALLQHFLVTEKSQQIIIFTATRSDTDRLAKLLT---EQNLNAVALSGELNQGQRNQIMES 291
Query: 336 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395
F +G+ ++LV++D +RG+D+ V++V+N+D P + + ++HR GRT RAG G +L+
Sbjct: 292 FSKGQHKILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVG 351
Query: 396 KDE---VKRFKKLLQK 408
++ +K + LQ+
Sbjct: 352 PNDWLSLKNVEAFLQQ 367
Score = 133 (51.9 bits), Expect = 6.5e-27, Sum P(3) = 6.5e-27
Identities = 38/111 (34%), Positives = 57/111 (51%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-NRAV--RCL 57
MG + P Q+ Q+ I + DL +S TGSGKTL++ +P +Q LS NRA+ R
Sbjct: 19 MGFNE--PTQIQ--QQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRLSKNRALSKRDP 74
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 108
R +++ PTR+LA QV L +G + D++ L K P+
Sbjct: 75 RVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQKEPE 125
Score = 97 (39.2 bits), Expect = 6.5e-27, Sum P(3) = 6.5e-27
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLL 165
D ++ LQ + +VATPGRL DH+ T+G F L L L++DE DR+L
Sbjct: 115 DQVKVLQKEPEFIVATPGRLADHL--TQGHFHLNGLELLILDEADRML 160
>FB|FBgn0034496 [details] [associations]
symbol:CG9143 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14805 GeneTree:ENSGT00550000074847
OMA:DAYLYYI EMBL:BT010296 RefSeq:NP_611467.1 UniGene:Dm.22095
SMR:Q6NQY9 STRING:Q6NQY9 EnsemblMetazoa:FBtr0086304 GeneID:37296
KEGG:dme:Dmel_CG9143 UCSC:CG9143-RA FlyBase:FBgn0034496
InParanoid:Q6NQY9 OrthoDB:EOG4VQ84N GenomeRNAi:37296 NextBio:802980
Uniprot:Q6NQY9
Length = 813
Score = 277 (102.6 bits), Expect = 7.7e-27, Sum P(3) = 7.7e-27
Identities = 84/308 (27%), Positives = 149/308 (48%)
Query: 124 LQSAVDILVATPGRLMD-HINATRGF-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 181
L+ DI+VATPGRL + + R +E + +LV+DETDR++ + + L ++L++
Sbjct: 387 LRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFEELRSLLKVLN 446
Query: 182 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 241
SD + + F+ SA +L +++ K P+ VK + + + + +L
Sbjct: 447 SDEQKKHQ-RQNFVYSATLTLVHDLPDHMQKRNVGKR-PKFVKQTVDQKIE---SLIEEL 501
Query: 242 DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTH 301
+ P + ++ ES +L+C K +L +Q + IVF +S++
Sbjct: 502 GISQPKIVDITSSQQTAQTLTES-RLLCPIDHKDYHLYYFIQR-HPGRTIVFCNSIDCVK 559
Query: 302 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 361
RL TL FG L Q R K L+ FR+ +L+++D RG+D+ V +
Sbjct: 560 RLATL---FGLLDCNPLPLHANMIQKQRLKNLERFRDSPTGLLIATDVAARGLDIPNVEH 616
Query: 362 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN-DSCPIHSIP 420
V++Y P + Y+HR+GRTARA + G + EVK + KL + + + P+ I
Sbjct: 617 VIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEVKSYVKLYKTLERTEDLPLFPIL 676
Query: 421 SSLIESLR 428
+ ++R
Sbjct: 677 ERFMGAVR 684
Score = 74 (31.1 bits), Expect = 7.7e-27, Sum P(3) = 7.7e-27
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 57 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
L LV+ PTR+LA+QVK+ A A G+ V G ++A + L + P +
Sbjct: 341 LYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLAVAKQERVLRQCPDI 393
Score = 57 (25.1 bits), Expect = 7.7e-27, Sum P(3) = 7.7e-27
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 24 ERDLCINSPTGSGKTLSYALPI---VQTLSNRAVR 55
++D+ + TGSGKTL++ +P+ + L R +R
Sbjct: 253 KKDILGAAETGSGKTLAFGIPMLAGIMELKQRNIR 287
>UNIPROTKB|E2RPT4 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
EMBL:AAEX03002786 Ensembl:ENSCAFT00000038045 Uniprot:E2RPT4
Length = 687
Score = 181 (68.8 bits), Expect = 8.2e-27, Sum P(3) = 8.2e-27
Identities = 54/189 (28%), Positives = 92/189 (48%)
Query: 225 MVLSATLTQDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 282
++ SAT Q K+A+ + + G+ K +E + C +P + +L
Sbjct: 325 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 384
Query: 283 Q--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 340
Q S E + I+F + ++ + +N ++ + G QS R TLK FREG
Sbjct: 385 QVYSGSEGRAIIFCETKKNVTEMA--MNP--HIKQNAQCLHGDIAQSQREITLKGFREGS 440
Query: 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
+VLV+++ RG+D+ V+ V+ P +++YIHR+GRT RAG+ G C E
Sbjct: 441 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 500
Query: 401 RFKKLLQKA 409
+ + + QKA
Sbjct: 501 QLRYVEQKA 509
Score = 140 (54.3 bits), Expect = 8.2e-27, Sum P(3) = 8.2e-27
Identities = 39/107 (36%), Positives = 58/107 (54%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-----RAVRC 56
G+S LFP+QV +T GP +DL + TG+GKT S+A+P+++ L + R
Sbjct: 158 GVSYLFPIQV----KTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRS 213
Query: 57 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
+ LV+ PTR+LA QV F I LSV G +S +I+ +
Sbjct: 214 PKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 258
Score = 101 (40.6 bits), Expect = 8.2e-27, Sum P(3) = 8.2e-27
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G Y + + +++ +DILV TPGR+ DH+ + R L L ++V+DE D++L +
Sbjct: 248 GTSYQSQ--INHIRNGIDILVGTPGRIKDHLQSGR-LDLSKLRHVVLDEVDQMLDLGFAE 304
Query: 172 WLPTVLQLT-RSDNEN 186
+ ++ + ++D+E+
Sbjct: 305 QVEDIIHESYKTDSED 320
>MGI|MGI:1915098 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915098 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:AK129402
EMBL:AK033741 EMBL:AK154422 EMBL:BC117786 EMBL:BC117787
IPI:IPI00453808 RefSeq:NP_080685.2 UniGene:Mm.281601
ProteinModelPortal:Q6ZPL9 SMR:Q6ZPL9 IntAct:Q6ZPL9 STRING:Q6ZPL9
PRIDE:Q6ZPL9 Ensembl:ENSMUST00000071057 GeneID:67848 KEGG:mmu:67848
UCSC:uc008zqc.2 InParanoid:Q6ZPL9 NextBio:325707 Bgee:Q6ZPL9
CleanEx:MM_DDX55 Genevestigator:Q6ZPL9
GermOnline:ENSMUSG00000029389 Uniprot:Q6ZPL9
Length = 600
Score = 217 (81.4 bits), Expect = 8.7e-27, Sum P(2) = 8.7e-27
Identities = 64/206 (31%), Positives = 103/206 (50%)
Query: 226 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 279
+ SAT TQ+ L + L +P+ ++ E + K P RLE++ +IC++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKFNQLV 259
Query: 280 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL------RIKIKEYSGLQRQSVRSKTL 333
L+S +EK +VF S+ C + ++G+ ++KI G + R+K
Sbjct: 260 HFLRSRQQEKHLVFFST-------CACVEYYGKALEALLKKVKILCIHGKMKYK-RNKIF 311
Query: 334 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
FR+ + +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G
Sbjct: 312 MEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVF 371
Query: 394 LHKDEVKRFKKLLQKADNDSCPIHSI 419
L E + + L A N CP+ +
Sbjct: 372 LLPME-EAYINFL--AINQKCPLQEM 394
Score = 158 (60.7 bits), Expect = 8.7e-27, Sum P(2) = 8.7e-27
Identities = 59/197 (29%), Positives = 92/197 (46%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR----ALVV 62
FP V TI + +D+ + TGSGKTL++ +PI++ L R + + A+V+
Sbjct: 29 FPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKNQVGAIVI 88
Query: 63 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 122
PTR+LA+Q+ +V + + S+++ G EDV +
Sbjct: 89 TPTRELAIQIDEVLSHFTKHF--------------PQFSQILWIGGRNPG-----EDVER 129
Query: 123 ELQSAVDILVATPGRLMDHINA-TRGFTL----EHLCYLVVDETDRLLREAYQAWLPTVL 177
Q +I+VATPGRL D G L + L LV+DE DRLL ++A + T+L
Sbjct: 130 FKQHGGNIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTIL 189
Query: 178 Q-LTRSDNENRFSDAST 193
+ L + FS T
Sbjct: 190 EFLPKQRRTGLFSATQT 206
>UNIPROTKB|E2QTT0 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:GDTEEGC EMBL:AAEX03002786
Ensembl:ENSCAFT00000021867 NextBio:20898308 Uniprot:E2QTT0
Length = 738
Score = 181 (68.8 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 54/189 (28%), Positives = 92/189 (48%)
Query: 225 MVLSATLTQDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 282
++ SAT Q K+A+ + + G+ K +E + C +P + +L
Sbjct: 324 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 383
Query: 283 Q--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 340
Q S E + I+F + ++ + +N ++ + G QS R TLK FREG
Sbjct: 384 QVYSGSEGRAIIFCETKKNVTEMA--MNP--HIKQNAQCLHGDIAQSQREITLKGFREGS 439
Query: 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
+VLV+++ RG+D+ V+ V+ P +++YIHR+GRT RAG+ G C E
Sbjct: 440 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 499
Query: 401 RFKKLLQKA 409
+ + + QKA
Sbjct: 500 QLRYVEQKA 508
Score = 140 (54.3 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 39/107 (36%), Positives = 58/107 (54%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-----RAVRC 56
G+S LFP+QV +T GP +DL + TG+GKT S+A+P+++ L + R
Sbjct: 157 GVSYLFPIQV----KTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRS 212
Query: 57 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
+ LV+ PTR+LA QV F I LSV G +S +I+ +
Sbjct: 213 PKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 257
Score = 101 (40.6 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G Y + + +++ +DILV TPGR+ DH+ + R L L ++V+DE D++L +
Sbjct: 247 GTSYQSQ--INHIRNGIDILVGTPGRIKDHLQSGR-LDLSKLRHVVLDEVDQMLDLGFAE 303
Query: 172 WLPTVLQLT-RSDNEN 186
+ ++ + ++D+E+
Sbjct: 304 QVEDIIHESYKTDSED 319
>MGI|MGI:2182303 [details] [associations]
symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 MGI:MGI:2182303 GO:GO:0005886 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:AF334104 IPI:IPI00117771 RefSeq:NP_444413.1
UniGene:Mm.114116 ProteinModelPortal:Q99MJ9 SMR:Q99MJ9
PhosphoSite:Q99MJ9 PaxDb:Q99MJ9 PRIDE:Q99MJ9
Ensembl:ENSMUST00000020270 GeneID:94213 KEGG:mmu:94213
UCSC:uc007fhp.1 InParanoid:Q99MJ9 NextBio:352175 Bgee:Q99MJ9
CleanEx:MM_DDX50 Genevestigator:Q99MJ9
GermOnline:ENSMUSG00000020076 Uniprot:Q99MJ9
Length = 734
Score = 180 (68.4 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 54/189 (28%), Positives = 92/189 (48%)
Query: 225 MVLSATLTQDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 282
++ SAT Q K+A+ + + G+ K +E + C +P + +L
Sbjct: 320 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 379
Query: 283 Q--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 340
Q S E + I+F + ++ + +N ++ + G QS R TLK FREG
Sbjct: 380 QVYSGSEGRAIIFCETKKNVTEMA--MNP--HIKQNAQCLHGDIAQSQREITLKGFREGS 435
Query: 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
+VLV+++ RG+D+ V+ V+ P +++YIHR+GRT RAG+ G C E
Sbjct: 436 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERG 495
Query: 401 RFKKLLQKA 409
+ + + QKA
Sbjct: 496 QLRYVEQKA 504
Score = 139 (54.0 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 38/107 (35%), Positives = 59/107 (55%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-----RAVRC 56
G++ LFP+QV +T GP +DL + TG+GKT S+A+P+++ L + R
Sbjct: 153 GVTYLFPIQV----KTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRS 208
Query: 57 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
+ LV+ PTR+LA QV F I LSV G +S +I+++
Sbjct: 209 PKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINQI 253
Score = 103 (41.3 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 22/76 (28%), Positives = 46/76 (60%)
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G Y + + ++++ +DILV TPGR+ DH+ + R L L ++V+DE D++L +
Sbjct: 243 GTSYQSQ--INQIRNGIDILVGTPGRIKDHLQSGR-LDLSKLRHVVLDEVDQMLDLGFAE 299
Query: 172 WLPTVLQLT-RSDNEN 186
+ ++ + ++D+E+
Sbjct: 300 QVEDIIHESYKTDSED 315
>SGD|S000002602 [details] [associations]
symbol:MSS116 "DEAD-box protein involved splicing of
mitochondrial introns" species:4932 "Saccharomyces cerevisiae"
[GO:0000373 "Group II intron splicing" evidence=IMP;IDA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005759
"mitochondrial matrix" evidence=IEA;IMP] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0000372 "Group I intron
splicing" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0034337 "RNA folding" evidence=IMP] [GO:0033592
"RNA strand annealing activity" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000002602
GO:GO:0005524 GO:GO:0006417 GO:GO:0005759 GO:GO:0006397
EMBL:BK006938 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 EMBL:Z48784 GO:GO:0000373 GO:GO:0000372
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00700000105515 GO:GO:0033592 OrthoDB:EOG437VPN
PIR:S02116 RefSeq:NP_010480.1 PDB:3I5X PDB:3I5Y PDB:3I61 PDB:3I62
PDB:3SQW PDB:3SQX PDB:4DB2 PDB:4DB4 PDBsum:3I5X PDBsum:3I5Y
PDBsum:3I61 PDBsum:3I62 PDBsum:3SQW PDBsum:3SQX PDBsum:4DB2
PDBsum:4DB4 ProteinModelPortal:P15424 SMR:P15424 DIP:DIP-5368N
IntAct:P15424 MINT:MINT-525340 STRING:P15424 PaxDb:P15424
PeptideAtlas:P15424 EnsemblFungi:YDR194C GeneID:851775
KEGG:sce:YDR194C CYGD:YDR194c HOGENOM:HOG000113654 OMA:PEAHENI
EvolutionaryTrace:P15424 NextBio:969573 Genevestigator:P15424
GermOnline:YDR194C GO:GO:0034337 Uniprot:P15424
Length = 664
Score = 211 (79.3 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 67/232 (28%), Positives = 112/232 (48%)
Query: 190 DASTFLPSAF-GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ--LDLHHP 246
+A L F L+TI G+ K + ++ SATL KLA ++
Sbjct: 268 EADRLLEIGFRDDLETIS--GILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKEC 325
Query: 247 LFL-TTGETRYKLPERLESYKLICESKLKPLYLVA--LLQSLGEE----KCIVFTSSVES 299
LFL T + + ER++ +I E ++ + + + E K I+F +V+
Sbjct: 326 LFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKF 385
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
T LC++L + + + I E+ G Q+ R+ +K F++ + +LV +D RGMD V
Sbjct: 386 TSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNV 445
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 411
+ V+ P+ + YIHR GRTAR+G+ G + KDE+ F + L+ A N
Sbjct: 446 HEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELP-FVRELEDAKN 496
Score = 165 (63.1 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 58/197 (29%), Positives = 97/197 (49%)
Query: 7 FPVQVAVWQETIGPGLF--ERDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLRALV 61
FP V Q+TI P L + D+ + TG+GKT ++ +PI Q L N + ++A++
Sbjct: 126 FPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVI 185
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
V PTRDLALQ++ A + ++ GL + ++ L+ A + + +
Sbjct: 186 VAPTRDLALQIE---AEVKKIHDMNYGLKK-YACVS-----LVGGTDFRAAM-----NKM 231
Query: 122 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 181
+L+ +I++ATPGRL+D + + Y V+DE DRLL ++ L T+ +
Sbjct: 232 NKLRP--NIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILN 289
Query: 182 SDNENRFSDASTFLPSA 198
N + T L SA
Sbjct: 290 EKNSKSADNIKTLLFSA 306
Score = 37 (18.1 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 331 KTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 363
+T ++ +EG + + D + ++E N+V
Sbjct: 466 RTARSGKEGSSVLFICKDELPFVRELEDAKNIV 498
>RGD|1562539 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10116 "Rattus norvegicus" [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000075100 IPI:IPI00193685
Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
Uniprot:D3ZHY6
Length = 906
Score = 198 (74.8 bits), Expect = 1.3e-26, Sum P(3) = 1.3e-26
Identities = 56/177 (31%), Positives = 91/177 (51%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SATL + + A+ L P+ + + KL E+L++ + K L+ LLQ+
Sbjct: 274 VLFSATLPKLLVEFARAGLTEPVLIRL-DVDSKLNEQLKTSFFLVREDTKTAVLLYLLQN 332
Query: 285 L--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+ +++ +VF ++ L LL G I YS L Q+ R L F K
Sbjct: 333 VVRPQDQNVVFVATKHHAEYLTELLTGQGVSCAHI--YSALD-QTARKINLAKFTHNKCS 389
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
L+ +D RG+D+ ++NV+NY PA K ++HR GR ARAG+ G ++L+ DEV
Sbjct: 390 TLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEV 446
Score = 131 (51.2 bits), Expect = 1.3e-26, Sum P(3) = 1.3e-26
Identities = 32/104 (30%), Positives = 54/104 (51%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPT 65
+ V + ++TI L +D+ + TGSGKT + LP+ + L R+ + RAL++ PT
Sbjct: 115 YKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKARSAQTGARALILSPT 174
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
R+LALQ + GL L +G + D+ + L + P +
Sbjct: 175 RELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDI 218
Score = 94 (38.1 bits), Expect = 1.3e-26, Sum P(3) = 1.3e-26
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
ED L DI++ATPGRL+ H+ L+ + Y+V DE DRL + L ++
Sbjct: 206 EDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEII 264
Score = 37 (18.1 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 20/78 (25%), Positives = 31/78 (39%)
Query: 331 KTLKAFREGKIQVLVSSDAMTRGMDVE-GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 389
+ +A R G LV+ D + +D+ + V +P + AG R G LGR
Sbjct: 427 RVARAGRSGTAYSLVAPDEVPYLLDLHLFLGRSVTLARPHEEPS---SAGAVGRDGVLGR 483
Query: 390 CFTLLHKDEVKRFKKLLQ 407
+ DE + LQ
Sbjct: 484 VPQSVVDDEDSSLQTALQ 501
>ZFIN|ZDB-GENE-060623-1 [details] [associations]
symbol:ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
52" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060623-1
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:11056 HOVERGEN:HBG051332 KO:K14779
OrthoDB:EOG4XKV6Q EMBL:BC117610 IPI:IPI00627696
RefSeq:NP_001037780.1 UniGene:Dr.13799 ProteinModelPortal:Q1ECZ5
STRING:Q1ECZ5 GeneID:407696 KEGG:dre:407696 NextBio:20818558
Uniprot:Q1ECZ5
Length = 606
Score = 215 (80.7 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 57/198 (28%), Positives = 96/198 (48%)
Query: 220 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLYL 278
P + +++ SAT D + +L+L + + ++ G R E +E L S+ K L +
Sbjct: 347 PNVRRVLFSATFATDVERWCKLNLDNLVSVSIG-ARNSAAETVEQQLLFVGSENGKILAM 405
Query: 279 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 338
L++ +VF S++ L L + G + + + Q+Q R + +FR
Sbjct: 406 RNLIKQGFLPPVLVFVQSIDRARELYHELVYEG-INVDVIHADRTQQQ--RDNVVSSFRS 462
Query: 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
GKI VL+ + + RG+D +G+N V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 463 GKIWVLICTALLARGIDFKGINLVINYDFPTSAVEYIHRIGRTGRAGHKGKAVTFFTEDD 522
Query: 399 VKRFKKLLQKADNDSCPI 416
+ + CP+
Sbjct: 523 KPLLRSIATVIKKAGCPV 540
Score = 115 (45.5 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F + + + + +R++ +PTGSGKT+++ LP++ L + RAL++ PTR
Sbjct: 187 FQTPTPIQMQAVPLMMHKREILACAPTGSGKTMAFCLPLLAHLRQPLNKGFRALIISPTR 246
Query: 67 DLALQVKDVFAAIAPAVGLSV 87
+LA Q ++ VG V
Sbjct: 247 ELATQTHRELLKLSEGVGFRV 267
Score = 82 (33.9 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 129 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 184
DILV TP RL+ +N L + +LVVDE+D+L + ++ L T+ S N
Sbjct: 289 DILVTTPNRLIYLLNQDPPAINLSSVEWLVVDESDKLFEDGKTGFREQLATIFLACSSPN 348
Query: 185 ENRFSDASTF 194
R ++TF
Sbjct: 349 VRRVLFSATF 358
>UNIPROTKB|F1MMK3 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:DAAA02061828 IPI:IPI00689334 RefSeq:NP_001192982.1
UniGene:Bt.55841 PRIDE:F1MMK3 Ensembl:ENSBTAT00000022002
GeneID:534331 KEGG:bta:534331 NextBio:20876363 ArrayExpress:F1MMK3
Uniprot:F1MMK3
Length = 737
Score = 181 (68.8 bits), Expect = 1.8e-26, Sum P(3) = 1.8e-26
Identities = 54/189 (28%), Positives = 92/189 (48%)
Query: 225 MVLSATLTQDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 282
++ SAT Q K+A+ + + G+ K +E + C +P + +L
Sbjct: 323 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 382
Query: 283 Q--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 340
Q S E + I+F + ++ + +N ++ + G QS R TLK FREG
Sbjct: 383 QVYSGSEGRAIIFCETKKNVTEMA--MNP--HIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
+VLV+++ RG+D+ V+ V+ P +++YIHR+GRT RAG+ G C E
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 498
Query: 401 RFKKLLQKA 409
+ + + QKA
Sbjct: 499 QLRYVEQKA 507
Score = 136 (52.9 bits), Expect = 1.8e-26, Sum P(3) = 1.8e-26
Identities = 37/107 (34%), Positives = 58/107 (54%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-----RAVRC 56
G++ LFP+QV +T GP +DL + TG+GKT S+A+P+++ L + R
Sbjct: 156 GVTYLFPIQV----KTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRS 211
Query: 57 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
+ LV+ PTR+LA QV F + LSV G +S +I+ +
Sbjct: 212 PKVLVLAPTRELANQVAKDFKDVTRK--LSVACFYGGTSYQSQINHI 256
Score = 103 (41.3 bits), Expect = 1.8e-26, Sum P(3) = 1.8e-26
Identities = 23/76 (30%), Positives = 45/76 (59%)
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G Y + + +++ +DILV TPGR+ DH+ + R L L ++V+DE D++L +
Sbjct: 246 GTSYQSQ--INHIRNGIDILVGTPGRIKDHLQSGR-LDLSKLRHVVLDEVDQMLDLGFAE 302
Query: 172 WLPTVLQLT-RSDNEN 186
+ +L + ++D+E+
Sbjct: 303 QVEDILHESYKTDSED 318
>UNIPROTKB|E1BGI6 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
Length = 877
Score = 200 (75.5 bits), Expect = 2.2e-26, Sum P(3) = 2.2e-26
Identities = 56/177 (31%), Positives = 92/177 (51%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SATL + + A+ L P+ + + KL E+L++ + K L+ LL++
Sbjct: 275 VLFSATLPKLLVEFARAGLTEPVLIRL-DVDSKLNEQLKTSFFLVREDAKAAVLLHLLRN 333
Query: 285 L--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+ +++ +VF ++ L LL G I YS L Q+ R L F GK
Sbjct: 334 VVRPQDQTVVFVATKHHAEYLSELLATQGVSCAHI--YSALD-QTARKINLARFTHGKCS 390
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
L+ +D RG+D+ ++NV+NY PA K ++HR GR ARAG+ G ++L+ DEV
Sbjct: 391 ALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEV 447
Score = 126 (49.4 bits), Expect = 2.2e-26, Sum P(3) = 2.2e-26
Identities = 30/104 (28%), Positives = 53/104 (50%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPT 65
+ V + ++TI L +D+ + TGSGKT + +P+ + L + + RAL++ PT
Sbjct: 116 YKVPTPIQRKTIPMILDGKDVVAMARTGSGKTACFLIPMFERLKTHSAQTGARALILSPT 175
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
R+LALQ + GL L +G + D+ + L + P +
Sbjct: 176 RELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDI 219
Score = 94 (38.1 bits), Expect = 2.2e-26, Sum P(3) = 2.2e-26
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
ED L DI++ATPGRL+ H+ L+ + Y+V DE DRL + L ++
Sbjct: 207 EDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEII 265
>UNIPROTKB|Q9BQ39 [details] [associations]
symbol:DDX50 "ATP-dependent RNA helicase DDX50"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
EMBL:CH471083 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AL359844 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:AF334103 EMBL:BC000210
EMBL:BC000272 EMBL:BC018637 IPI:IPI00031554 RefSeq:NP_076950.1
UniGene:Hs.522984 PDB:2E29 PDBsum:2E29 ProteinModelPortal:Q9BQ39
SMR:Q9BQ39 IntAct:Q9BQ39 STRING:Q9BQ39 PhosphoSite:Q9BQ39
DMDM:55976580 SWISS-2DPAGE:Q9BQ39 PaxDb:Q9BQ39 PeptideAtlas:Q9BQ39
PRIDE:Q9BQ39 DNASU:79009 Ensembl:ENST00000373585 GeneID:79009
KEGG:hsa:79009 UCSC:uc001jou.3 CTD:79009 GeneCards:GC10P070661
HGNC:HGNC:17906 HPA:HPA037388 MIM:610373 neXtProt:NX_Q9BQ39
PharmGKB:PA134948525 InParanoid:Q9BQ39 KO:K13183 OMA:GDTEEGC
PhylomeDB:Q9BQ39 ChiTaRS:DDX50 EvolutionaryTrace:Q9BQ39
GenomeRNAi:79009 NextBio:67657 ArrayExpress:Q9BQ39 Bgee:Q9BQ39
CleanEx:HS_DDX50 Genevestigator:Q9BQ39 Uniprot:Q9BQ39
Length = 737
Score = 181 (68.8 bits), Expect = 2.3e-26, Sum P(3) = 2.3e-26
Identities = 54/189 (28%), Positives = 92/189 (48%)
Query: 225 MVLSATLTQDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 282
++ SAT Q K+A+ + + G+ K +E + C +P + +L
Sbjct: 323 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 382
Query: 283 Q--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 340
Q S E + I+F + ++ + +N ++ + G QS R TLK FREG
Sbjct: 383 QVYSGSEGRAIIFCETKKNVTEMA--MNP--HIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 341 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400
+VLV+++ RG+D+ V+ V+ P +++YIHR+GRT RAG+ G C E
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERG 498
Query: 401 RFKKLLQKA 409
+ + + QKA
Sbjct: 499 QLRYVEQKA 507
Score = 137 (53.3 bits), Expect = 2.3e-26, Sum P(3) = 2.3e-26
Identities = 38/107 (35%), Positives = 58/107 (54%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-----RAVRC 56
G++ LFP+QV +T GP +DL + TG+GKT S+A+P+++ L + R
Sbjct: 156 GVTYLFPIQV----KTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRS 211
Query: 57 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
+ LV+ PTR+LA QV F I LSV G +S +I+ +
Sbjct: 212 PKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256
Score = 101 (40.6 bits), Expect = 2.3e-26, Sum P(3) = 2.3e-26
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G Y + + +++ +DILV TPGR+ DH+ + R L L ++V+DE D++L +
Sbjct: 246 GTSYQSQ--INHIRNGIDILVGTPGRIKDHLQSGR-LDLSKLRHVVLDEVDQMLDLGFAE 302
Query: 172 WLPTVLQLT-RSDNEN 186
+ ++ + ++D+E+
Sbjct: 303 QVEDIIHESYKTDSED 318
>UNIPROTKB|J9P4L6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AAEX03026218 Ensembl:ENSCAFT00000021498 Uniprot:J9P4L6
Length = 598
Score = 213 (80.0 bits), Expect = 2.4e-26, Sum P(3) = 2.4e-26
Identities = 58/194 (29%), Positives = 91/194 (46%)
Query: 224 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 283
+ + SA D + +L+L + + ++ G R E +E L S+ L + L
Sbjct: 348 RAMFSAIFAYDVEQWCKLNLDNVITVSIG-ARNSAVETVEQELLFVGSETGKLLAMRELV 406
Query: 284 SLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
G +VF S+E L L + G + + + Q+Q R T+ +FR GKI
Sbjct: 407 KKGFNPPVLVFVQSIERAKELFHELIYEG-INVDVIHADRTQQQ--RDNTVHSFRAGKIW 463
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 464 VLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLL 523
Query: 403 KKLLQKADNDSCPI 416
+ + CP+
Sbjct: 524 RSVANVIQQAGCPV 537
Score = 130 (50.8 bits), Expect = 2.4e-26, Sum P(3) = 2.4e-26
Identities = 28/91 (30%), Positives = 51/91 (56%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F + + I L R+L ++PTGSGKTL++++PI+ L + RAL++ PTR
Sbjct: 184 FQTPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALIISPTR 243
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 97
+LA Q+ I+ G + + + ++++A
Sbjct: 244 ELANQIHRELVKISEGTGFRIHM-IHKAAVA 273
Score = 67 (28.6 bits), Expect = 2.4e-26, Sum P(3) = 2.4e-26
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 129 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE 167
DILV TP RL+ + G L + +LVVDE+D+L +
Sbjct: 286 DILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFED 325
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 204 (76.9 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 61/200 (30%), Positives = 96/200 (48%)
Query: 210 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK-LPERLESYKLI 268
+ER + P R M+ SAT+ LA+ + P + + + E +
Sbjct: 193 IERILRQIPADRQ-SMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYR 251
Query: 269 CESKLKPLYLVA-LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 327
+ L + LV+ +LQ+ ++FT + + ++ L G + G Q
Sbjct: 252 AHA-LDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERG---FAVGAVHGDLGQL 307
Query: 328 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 387
R K LKAFR G I VLV++D RG+D++ V +V+NY P K Y+HR GRT RAG+
Sbjct: 308 AREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRT 367
Query: 388 GRCFTLLHKDEVKRFKKLLQ 407
G TL+ DE+ R+ + Q
Sbjct: 368 GVAVTLVDWDELPRWSMIDQ 387
Score = 166 (63.5 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 54/186 (29%), Positives = 91/186 (48%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-SNRAVRCL----RALVVLPTR 66
A+ + T+ L D+ + TG GKT ++ +P++Q + S R L RALVV+PTR
Sbjct: 35 AIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQRITSGDGTRPLTGAPRALVVVPTR 94
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+L LQV D A L+ G + A + + + G Y+P+ ++ L++
Sbjct: 95 ELCLQVTDDLATAGKY--LTAG---PDTDDAAAVRRRLSVVSIYGGRPYEPQ--IEALRA 147
Query: 127 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
D++V TPGRL+D L L LV+DE D +L + + +L+ +D ++
Sbjct: 148 GADVVVGTPGRLLDLCQQGH-LQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPADRQS 206
Query: 187 RFSDAS 192
A+
Sbjct: 207 MLFSAT 212
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 202 (76.2 bits), Expect = 2.6e-26, Sum P(2) = 2.6e-26
Identities = 53/202 (26%), Positives = 98/202 (48%)
Query: 210 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 269
++ K P R ++ SATL ++ L P + + + +E
Sbjct: 170 IQAVLKQVPAQRQT-LLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQ-IEQRVYAI 227
Query: 270 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 329
+S K ++ L++S ++ ++F+ + + +L LN G + + + G Q R
Sbjct: 228 DSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLG---VATQSFHGDLSQGAR 284
Query: 330 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 389
K L+ F++G +QVLV++D RG+D+ + V+N++ P + YIHR GRT RAG G
Sbjct: 285 EKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGL 344
Query: 390 CFTLLHKDE---VKRFKKLLQK 408
TL +++ ++ + LL K
Sbjct: 345 AITLFSQEDALLLEEVETLLDK 366
Score = 163 (62.4 bits), Expect = 2.6e-26, Sum P(2) = 2.6e-26
Identities = 48/136 (35%), Positives = 75/136 (55%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVR 55
+G P+QV E I L ++D+ + TG+GKT ++ALPI+Q L S+ A +
Sbjct: 19 LGYQQPTPIQV----EAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAK 74
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
+RALV++PTR+LALQV+ F A + VG+A G SI E + + ++ I
Sbjct: 75 AIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSI--EAQQAVFNAGIDVLIA- 131
Query: 116 DPEDVLQEL-QSAVDI 130
P +L L Q A+++
Sbjct: 132 TPGRLLDHLRQGALNL 147
Score = 132 (51.5 bits), Expect = 4.4e-23, Sum P(2) = 4.4e-23
Identities = 57/195 (29%), Positives = 85/195 (43%)
Query: 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 75
E I L ++D+ + TG+GKT ++ALPI+Q L A + R L L
Sbjct: 30 EAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAKAI---RALVL----- 81
Query: 76 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV-LQE--LQSAVDILV 132
P L+ L V QS + + K + GI Y + Q+ + +D+L+
Sbjct: 82 ----VPTRELA--LQVQQSFV-----KYAKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLI 130
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ L L LV DE DR+L + + VL+ + + A
Sbjct: 131 ATPGRLLDHLRQG-ALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFSA- 188
Query: 193 TFLPSAFGSLKTIRR 207
T S F K + R
Sbjct: 189 TLDDSIFSFSKNLLR 203
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 202 (76.2 bits), Expect = 2.6e-26, Sum P(2) = 2.6e-26
Identities = 53/202 (26%), Positives = 98/202 (48%)
Query: 210 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 269
++ K P R ++ SATL ++ L P + + + +E
Sbjct: 170 IQAVLKQVPAQRQT-LLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQ-IEQRVYAI 227
Query: 270 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 329
+S K ++ L++S ++ ++F+ + + +L LN G + + + G Q R
Sbjct: 228 DSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLG---VATQSFHGDLSQGAR 284
Query: 330 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 389
K L+ F++G +QVLV++D RG+D+ + V+N++ P + YIHR GRT RAG G
Sbjct: 285 EKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGL 344
Query: 390 CFTLLHKDE---VKRFKKLLQK 408
TL +++ ++ + LL K
Sbjct: 345 AITLFSQEDALLLEEVETLLDK 366
Score = 163 (62.4 bits), Expect = 2.6e-26, Sum P(2) = 2.6e-26
Identities = 48/136 (35%), Positives = 75/136 (55%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVR 55
+G P+QV E I L ++D+ + TG+GKT ++ALPI+Q L S+ A +
Sbjct: 19 LGYQQPTPIQV----EAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAK 74
Query: 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICY 115
+RALV++PTR+LALQV+ F A + VG+A G SI E + + ++ I
Sbjct: 75 AIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSI--EAQQAVFNAGIDVLIA- 131
Query: 116 DPEDVLQEL-QSAVDI 130
P +L L Q A+++
Sbjct: 132 TPGRLLDHLRQGALNL 147
Score = 132 (51.5 bits), Expect = 4.4e-23, Sum P(2) = 4.4e-23
Identities = 57/195 (29%), Positives = 85/195 (43%)
Query: 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 75
E I L ++D+ + TG+GKT ++ALPI+Q L A + R L L
Sbjct: 30 EAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAKAI---RALVL----- 81
Query: 76 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV-LQE--LQSAVDILV 132
P L+ L V QS + + K + GI Y + Q+ + +D+L+
Sbjct: 82 ----VPTRELA--LQVQQSFV-----KYAKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLI 130
Query: 133 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 192
ATPGRL+DH+ L L LV DE DR+L + + VL+ + + A
Sbjct: 131 ATPGRLLDHLRQG-ALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFSA- 188
Query: 193 TFLPSAFGSLKTIRR 207
T S F K + R
Sbjct: 189 TLDDSIFSFSKNLLR 203
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 225 (84.3 bits), Expect = 2.8e-26, Sum P(2) = 2.8e-26
Identities = 60/186 (32%), Positives = 101/186 (54%)
Query: 225 MVLSATLTQDPNKLAQLDLHHP--LFLTTGETRYKLPERLES--YKLICESKLKPLYLVA 280
++ SAT + D LA LH+P + +T T ER+E ++L K L+A
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTTV---ERIEQRVFRLAANHKRS---LLA 241
Query: 281 LLQSLGE-EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 339
L ++G E+ +VFT + +RL L+ G + I G + Q+ R+K L F+ G
Sbjct: 242 HLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIH---GNKSQNARTKALADFKAG 298
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
++++V++D RG+D++ + +VVN++ P + Y+HR GRT RAG+ G +L+ DE
Sbjct: 299 DVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEE 358
Query: 400 KRFKKL 405
K K +
Sbjct: 359 KLLKSI 364
Score = 145 (56.1 bits), Expect = 2.8e-26, Sum P(2) = 2.8e-26
Identities = 60/191 (31%), Positives = 85/191 (44%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---------RCLRALVVL 63
V Q I L RDL + + TG+GKT +ALPI++ L V R R LV+
Sbjct: 27 VQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHGPRQPRVLVLT 86
Query: 64 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 123
PTR+LA QV + F A + G G+ +P+ +Q
Sbjct: 87 PTRELAAQVHESFKLYARDLKFVSACIFG-------------------GVGMNPQ--VQA 125
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
+ VD+LVA PGRL+D + L H+ LV+DE DR+L + + VL +
Sbjct: 126 MSRGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAK 184
Query: 184 NENRFSDASTF 194
+N A TF
Sbjct: 185 RQNLLFSA-TF 194
>WB|WBGene00019219 [details] [associations]
symbol:H20J04.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:FO080156
RefSeq:NP_001040789.1 ProteinModelPortal:Q2WF63 SMR:Q2WF63
PaxDb:Q2WF63 EnsemblMetazoa:H20J04.4b GeneID:186756
KEGG:cel:CELE_H20J04.4 UCSC:H20J04.4a CTD:186756 WormBase:H20J04.4b
InParanoid:Q2WF63 NextBio:932876 ArrayExpress:Q2WF63 Uniprot:Q2WF63
Length = 561
Score = 225 (84.3 bits), Expect = 2.9e-26, Sum P(2) = 2.9e-26
Identities = 57/185 (30%), Positives = 95/185 (51%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTT-GETRYKLPERLESYKLICESKLKPLYLVALLQ 283
++LSAT+T + N L ++ P F G+ +RLE ++C +K YLV +++
Sbjct: 270 LLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRLEQKYVVCPVAVKDAYLVYVVK 329
Query: 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+ E+ T R C L + E L ++ Q R L AFR +Q
Sbjct: 330 NYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRSKTLQ 389
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402
V++ +D +RG+D+ V+ VVN++ P KTYIHR GR+ARAG+ G + + + +V+
Sbjct: 390 VIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELL 449
Query: 403 KKLLQ 407
+ + Q
Sbjct: 450 QAVEQ 454
Score = 143 (55.4 bits), Expect = 2.9e-26, Sum P(2) = 2.9e-26
Identities = 39/108 (36%), Positives = 60/108 (55%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
M I + PVQ A P + E D+ + TG+GKTL++A+PI+Q LS + A
Sbjct: 107 MQIKTATPVQAACI-----PKILEGSDILGCARTGTGKTLAFAIPILQKLSVDPYG-IYA 160
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 107
L++ PTR+LA Q+ + F A+ + L + VG S+ + EL +RP
Sbjct: 161 LILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQARELSERP 208
Score = 84 (34.6 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 25/89 (28%), Positives = 43/89 (48%)
Query: 96 IADEISELIKRPKLEAGICYDPEDVL---QELQSAVDILVATPGRLMDHINA---TRGFT 149
IA++ + L K L+ + ++ +EL ++VATPGRL D I + T
Sbjct: 173 IAEQFTALGKPITLKCSVIVGGRSLIHQARELSERPHVVVATPGRLADLIESDPDTIAKV 232
Query: 150 LEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
+ + + V+DE DR+L Y L + +
Sbjct: 233 FKKIQFFVLDEADRMLEGQYNDQLKPIFE 261
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 233 (87.1 bits), Expect = 3.2e-26, Sum P(2) = 3.2e-26
Identities = 61/210 (29%), Positives = 106/210 (50%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SAT +LAQ L P+ + G ++ ++ K ++ ++S
Sbjct: 426 VMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEDEKRSHIQTFIES 485
Query: 285 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
+ ++K I+F S L + L G I ++ G + Q R + LK F+ GK+++
Sbjct: 486 MSPKDKVIIFVSRKAVADHLSSDL---GIRHISVESLHGNREQGDRERALKNFKTGKVRI 542
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 403
L+++D +RG+DV V +V NYD P I+ Y+HR GRT RAG+ G TL+ + + K
Sbjct: 543 LIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRSDWKIAG 602
Query: 404 KLLQKADNDSCPIHSIPSSLIESLRPVYKS 433
+L+ + + SIP L+E + YK+
Sbjct: 603 ELIHILERAN---QSIPEDLVE-MAERYKA 628
Score = 136 (52.9 bits), Expect = 3.2e-26, Sum P(2) = 3.2e-26
Identities = 60/199 (30%), Positives = 89/199 (44%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP-IVQTLSNRAVRCL-RA 59
G P+Q W I G+ DL + TG+GKTLSY +P + S V L RA
Sbjct: 260 GFQKPTPIQSQAWP-IILQGI---DLIGVAQTGTGKTLSYLMPGFIHVDSQPVVFSLQRA 315
Query: 60 ------LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
LV+ PTR+LALQV+ + + GL G +I +L+K
Sbjct: 316 RNGPGMLVLTPTRELALQVEAECSKYSYK-GLKSVCVYGGGDRDGQIKDLLK-------- 366
Query: 114 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
VDI++ATPGRL D + L+ + YLV+DE D++L ++ +
Sbjct: 367 -------------GVDIIIATPGRLND-LQMNNFVYLKSISYLVLDEADKMLDMGFEPQI 412
Query: 174 PTVLQLTRSDNENRFSDAS 192
+L R D + + A+
Sbjct: 413 MKILLDIRPDRQTVMTSAT 431
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 200 (75.5 bits), Expect = 3.3e-26, Sum P(3) = 3.3e-26
Identities = 51/186 (27%), Positives = 89/186 (47%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SAT ++ +LA+ L++ + + G + +C+ K + L+ LL
Sbjct: 339 LMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLTD 398
Query: 285 LGEE---KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 341
+ E K I+F VE+ R+ + + + G + Q R L +FR G+
Sbjct: 399 ISAENETKTIIF---VETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRH 455
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
+LV++D RG+DV+ V V+NYD P+ + Y+HR GRT R+ G +TL +
Sbjct: 456 SILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANK 515
Query: 402 FKKLLQ 407
L+Q
Sbjct: 516 ANDLIQ 521
Score = 118 (46.6 bits), Expect = 3.3e-26, Sum P(3) = 3.3e-26
Identities = 25/65 (38%), Positives = 42/65 (64%)
Query: 122 QELQSAVDILVATPGRLMDHINATRGFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
++L+ V+I++ATPGRL+D + RG T L+ YLV+DE DR+L ++ + ++Q
Sbjct: 275 RDLERGVEIVIATPGRLIDFLE--RGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 332
Query: 181 RSDNE 185
R D +
Sbjct: 333 RPDRQ 337
Score = 99 (39.9 bits), Expect = 3.3e-26, Sum P(3) = 3.3e-26
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLALQVKDV 75
RDL + TGSGKTL+Y LP V ++N+ R R ALV+ PTR+LA Q++ V
Sbjct: 195 RDLVGVAQTGSGKTLAYVLPAVVHINNQP-RLERGDGPIALVLAPTRELAQQIQQV 249
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 223 (83.6 bits), Expect = 3.5e-26, Sum P(2) = 3.5e-26
Identities = 59/187 (31%), Positives = 96/187 (51%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 184 LLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGK 242
Query: 285 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 344
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+VL
Sbjct: 243 GNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVL 299
Query: 345 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK- 403
V++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE K +
Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359
Query: 404 --KLLQK 408
KLL+K
Sbjct: 360 IEKLLKK 366
Score = 140 (54.3 bits), Expect = 3.5e-26, Sum P(2) = 3.5e-26
Identities = 49/142 (34%), Positives = 74/142 (52%)
Query: 13 VWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAV-----RCLRALVVLPTR 66
+ Q+ I P + E RDL ++ TG+GKT + LP++Q L R R +RAL++ PTR
Sbjct: 27 IQQQAI-PAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTR 85
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 126
+LA Q+ G V S I L+ + G+ +P+ + +L+
Sbjct: 86 ELAAQI---------------GENVRDYSKYLNIRSLV----VFGGVSINPQ--MMKLRG 124
Query: 127 AVDILVATPGRLMD--HINATR 146
VD+LVATPGRL+D H NA +
Sbjct: 125 GVDVLVATPGRLLDLEHQNAVK 146
Score = 107 (42.7 bits), Expect = 9.8e-23, Sum P(2) = 9.8e-23
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAY 169
G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE DR+L +
Sbjct: 112 GVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRMLDMGF 166
Query: 170 QAWLPTVLQLTRSDNENRFSDASTF 194
+ VL + +N A TF
Sbjct: 167 IHDIRRVLTKLPAKRQNLLFSA-TF 190
>CGD|CAL0004095 [details] [associations]
symbol:TIF species:5476 "Candida albicans" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 179 (68.1 bits), Expect = 3.6e-26, Sum P(3) = 3.6e-26
Identities = 54/201 (26%), Positives = 97/201 (48%)
Query: 213 GFKDKPY------PRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY 265
GFK++ Y P ++VL SAT+ QD ++ +++P+ + + L E ++ +
Sbjct: 181 GFKEQIYNIFRLLPETTQIVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTL-EGIKQF 239
Query: 266 KLICESK-LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 324
+ E + K L L S+ + ++F ++ L N E +
Sbjct: 240 YINVELEDYKFDCLCDLYDSISVTQAVIFCNTRSKVE---FLTNKLREQHFTVSAIHADL 296
Query: 325 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 384
Q+ R +K FR G ++L+S+D + RG+DV+ V+ V+NYD PA + YIHR GR R
Sbjct: 297 PQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRF 356
Query: 385 GQLGRCFTLLHKDEVKRFKKL 405
G+ G + +V +++
Sbjct: 357 GRKGVAINFVTDRDVGMMREI 377
Score = 138 (53.6 bits), Expect = 3.6e-26, Sum P(3) = 3.6e-26
Identities = 30/89 (33%), Positives = 56/89 (62%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ Q I P RD+ + +G+GKT ++ + +Q + N + +AL++ PTR+LALQ
Sbjct: 48 AIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRI-NENEKATQALILAPTRELALQ 106
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEI 100
+K+V AI + ++V ++G +S++D+I
Sbjct: 107 IKNVITAIGLYLKVTVHASIGGTSMSDDI 135
Score = 86 (35.3 bits), Expect = 3.6e-26, Sum P(3) = 3.6e-26
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
D ++ +S V I+V TPGR++D I R F + + ++DE D +L ++ + + +
Sbjct: 133 DDIEAFRSGVQIVVGTPGRVLDMIER-RYFKTDKVKMFILDEADEMLSSGFKEQIYNIFR 191
Query: 179 L 179
L
Sbjct: 192 L 192
>UNIPROTKB|P87206 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:237561 "Candida albicans SC5314" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 179 (68.1 bits), Expect = 3.6e-26, Sum P(3) = 3.6e-26
Identities = 54/201 (26%), Positives = 97/201 (48%)
Query: 213 GFKDKPY------PRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY 265
GFK++ Y P ++VL SAT+ QD ++ +++P+ + + L E ++ +
Sbjct: 181 GFKEQIYNIFRLLPETTQIVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTL-EGIKQF 239
Query: 266 KLICESK-LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 324
+ E + K L L S+ + ++F ++ L N E +
Sbjct: 240 YINVELEDYKFDCLCDLYDSISVTQAVIFCNTRSKVE---FLTNKLREQHFTVSAIHADL 296
Query: 325 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 384
Q+ R +K FR G ++L+S+D + RG+DV+ V+ V+NYD PA + YIHR GR R
Sbjct: 297 PQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRF 356
Query: 385 GQLGRCFTLLHKDEVKRFKKL 405
G+ G + +V +++
Sbjct: 357 GRKGVAINFVTDRDVGMMREI 377
Score = 138 (53.6 bits), Expect = 3.6e-26, Sum P(3) = 3.6e-26
Identities = 30/89 (33%), Positives = 56/89 (62%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ Q I P RD+ + +G+GKT ++ + +Q + N + +AL++ PTR+LALQ
Sbjct: 48 AIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRI-NENEKATQALILAPTRELALQ 106
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEI 100
+K+V AI + ++V ++G +S++D+I
Sbjct: 107 IKNVITAIGLYLKVTVHASIGGTSMSDDI 135
Score = 86 (35.3 bits), Expect = 3.6e-26, Sum P(3) = 3.6e-26
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
D ++ +S V I+V TPGR++D I R F + + ++DE D +L ++ + + +
Sbjct: 133 DDIEAFRSGVQIVVGTPGRVLDMIER-RYFKTDKVKMFILDEADEMLSSGFKEQIYNIFR 191
Query: 179 L 179
L
Sbjct: 192 L 192
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 200 (75.5 bits), Expect = 4.4e-26, Sum P(2) = 4.4e-26
Identities = 58/176 (32%), Positives = 90/176 (51%)
Query: 225 MVLSATLTQDPNKLA-QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 283
++ SATL + + LA +L + PL + TR + +E + K L+ALL+
Sbjct: 208 LLFSATLPEALDSLAGKLLTNDPLKVEAS-TRNAVVGEIEEQLYLVNKGSKAQALIALLK 266
Query: 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
+ +VF S+ + + L G I G + Q+VRS+TL F+ +IQV
Sbjct: 267 QYQWPQVLVFISARDDADAIAKRLVKAG---INAAALHGEKDQTVRSQTLADFKADRIQV 323
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
LV++D M RG+ V+ + V+N D P Y+HR GRTARAG G +L+ E+
Sbjct: 324 LVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVCHGEM 379
Score = 165 (63.1 bits), Expect = 4.4e-26, Sum P(2) = 4.4e-26
Identities = 62/200 (31%), Positives = 99/200 (49%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--------SNRAVRCLR--ALVV 62
V Q I L RDL S TGSGKT ++ LP++Q L + ++V + ALV+
Sbjct: 42 VQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAKPLALVL 101
Query: 63 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 122
+PTR+LALQV + A+A + S L + +L L G+ + + L
Sbjct: 102 VPTRELALQVSEALHALASQLSTSAPLNI----------QL-----LCGGVALEQQ--LA 144
Query: 123 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 182
+L + ++VATPGRL+D + +L+ + +LV+DE DRLL + + ++ +
Sbjct: 145 DLSAKPQLVVATPGRLLDLCTQSH-ISLDAIKHLVLDEADRLLEMGFWPDMQKLMAMMPK 203
Query: 183 DNENRFSDASTFLPSAFGSL 202
+ A+ LP A SL
Sbjct: 204 RKQTLLFSAT--LPEALDSL 221
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 200 (75.5 bits), Expect = 4.4e-26, Sum P(2) = 4.4e-26
Identities = 58/176 (32%), Positives = 90/176 (51%)
Query: 225 MVLSATLTQDPNKLA-QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 283
++ SATL + + LA +L + PL + TR + +E + K L+ALL+
Sbjct: 208 LLFSATLPEALDSLAGKLLTNDPLKVEAS-TRNAVVGEIEEQLYLVNKGSKAQALIALLK 266
Query: 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
+ +VF S+ + + L G I G + Q+VRS+TL F+ +IQV
Sbjct: 267 QYQWPQVLVFISARDDADAIAKRLVKAG---INAAALHGEKDQTVRSQTLADFKADRIQV 323
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
LV++D M RG+ V+ + V+N D P Y+HR GRTARAG G +L+ E+
Sbjct: 324 LVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVCHGEM 379
Score = 165 (63.1 bits), Expect = 4.4e-26, Sum P(2) = 4.4e-26
Identities = 62/200 (31%), Positives = 99/200 (49%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--------SNRAVRCLR--ALVV 62
V Q I L RDL S TGSGKT ++ LP++Q L + ++V + ALV+
Sbjct: 42 VQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAKPLALVL 101
Query: 63 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 122
+PTR+LALQV + A+A + S L + +L L G+ + + L
Sbjct: 102 VPTRELALQVSEALHALASQLSTSAPLNI----------QL-----LCGGVALEQQ--LA 144
Query: 123 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 182
+L + ++VATPGRL+D + +L+ + +LV+DE DRLL + + ++ +
Sbjct: 145 DLSAKPQLVVATPGRLLDLCTQSH-ISLDAIKHLVLDEADRLLEMGFWPDMQKLMAMMPK 203
Query: 183 DNENRFSDASTFLPSAFGSL 202
+ A+ LP A SL
Sbjct: 204 RKQTLLFSAT--LPEALDSL 221
>UNIPROTKB|E1C4M1 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AADN02025730 IPI:IPI00593921 ProteinModelPortal:E1C4M1
Ensembl:ENSGALT00000008815 ArrayExpress:E1C4M1 Uniprot:E1C4M1
Length = 604
Score = 216 (81.1 bits), Expect = 4.6e-26, Sum P(3) = 4.6e-26
Identities = 58/190 (30%), Positives = 88/190 (46%)
Query: 228 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG- 286
SAT D + +L+L + ++ G R E +E L S+ L + L G
Sbjct: 348 SATFAHDVEEWCKLNLDSIVLVSVG-ARNSAAETVEQELLFVGSETGKLTAMRELVKKGF 406
Query: 287 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 346
+VF S+E L L + G + + + Q+Q R + +FR GKI VL+
Sbjct: 407 APPVLVFVQSIERAKELFHELIYEG-INVDVIHADKTQQQ--RDNVVHSFRAGKIWVLIC 463
Query: 347 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 406
+ + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+ + +
Sbjct: 464 TALLARGIDFKGVNMVINYDLPTSAVEYIHRIGRTGRAGHTGKAVTFFTEDDKPLLRSIA 523
Query: 407 QKADNDSCPI 416
CP+
Sbjct: 524 NVIQRAGCPV 533
Score = 126 (49.4 bits), Expect = 4.6e-26, Sum P(3) = 4.6e-26
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F V + + I L R+L ++PTGSGKTL++ +P++ L + RAL++ PTR
Sbjct: 179 FQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFCIPLLTHLKQPMNKGFRALIISPTR 238
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 97
+LA Q +A G + + S A
Sbjct: 239 ELASQTHRELVKLADGTGFRIHMIQKASEAA 269
Score = 65 (27.9 bits), Expect = 4.6e-26, Sum P(3) = 4.6e-26
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 128 VDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE 167
VDILV TP RL+ + L + +LVVDE+D+L +
Sbjct: 281 VDILVTTPNRLIYLLKQDPPAIDLTSVEWLVVDESDKLFED 321
>SGD|S000001767 [details] [associations]
symbol:TIF1 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;IMP;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA;IMP;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP;IDA] [GO:0005840 "ribosome" evidence=TAS] [GO:0016281
"eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001767
SGD:S000003674 GO:GO:0005524 GO:GO:0005737 EMBL:BK006943
EMBL:BK006944 GO:GO:0003743 EMBL:X87371 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 KO:K03854
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 204 (76.9 bits), Expect = 5.0e-26, Sum P(3) = 5.0e-26
Identities = 61/218 (27%), Positives = 106/218 (48%)
Query: 213 GFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY 265
GFK++ Y P ++LSAT+ D ++ + +P+ + + L + Y
Sbjct: 179 GFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFY 238
Query: 266 KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 325
+ E + K L L S+ + ++F ++ L T L + + + YS L +
Sbjct: 239 VNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRN-DKFTVSAI-YSDLPQ 296
Query: 326 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 385
Q R +K FR G ++L+S+D + RG+DV+ V+ V+NYD PA + YIHR GR R G
Sbjct: 297 QE-RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFG 355
Query: 386 QLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSL 423
+ G + ++V ++L +K S I +PS +
Sbjct: 356 RKGVAINFVTNEDVGAMREL-EKFY--STQIEELPSDI 390
Score = 118 (46.6 bits), Expect = 5.0e-26, Sum P(3) = 5.0e-26
Identities = 27/92 (29%), Positives = 54/92 (58%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ Q I P + D+ + +G+GKT ++++ +Q + +V+ +AL++ PTR+LALQ
Sbjct: 47 AIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-SVKAPQALMLAPTRELALQ 105
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
++ V A+A + + V +G +S ++ L
Sbjct: 106 IQKVVMALAFHMDIKVHACIGGTSFVEDAEGL 137
Score = 74 (31.1 bits), Expect = 5.0e-26, Sum P(3) = 5.0e-26
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
ED + L+ A I+V TPGR+ D+I R F + + ++DE D +L ++ + +
Sbjct: 132 EDA-EGLRDA-QIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIF 188
Query: 178 QL 179
L
Sbjct: 189 TL 190
>SGD|S000003674 [details] [associations]
symbol:TIF2 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISS;IDA;TAS] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISS;IDA] [GO:0006446 "regulation of translational
initiation" evidence=ISS] [GO:0005840 "ribosome" evidence=TAS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000001767 SGD:S000003674 GO:GO:0005524
GO:GO:0005737 EMBL:BK006943 EMBL:BK006944 GO:GO:0003743 EMBL:X87371
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K03854 eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 204 (76.9 bits), Expect = 5.0e-26, Sum P(3) = 5.0e-26
Identities = 61/218 (27%), Positives = 106/218 (48%)
Query: 213 GFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY 265
GFK++ Y P ++LSAT+ D ++ + +P+ + + L + Y
Sbjct: 179 GFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFY 238
Query: 266 KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 325
+ E + K L L S+ + ++F ++ L T L + + + YS L +
Sbjct: 239 VNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRN-DKFTVSAI-YSDLPQ 296
Query: 326 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 385
Q R +K FR G ++L+S+D + RG+DV+ V+ V+NYD PA + YIHR GR R G
Sbjct: 297 QE-RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFG 355
Query: 386 QLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSL 423
+ G + ++V ++L +K S I +PS +
Sbjct: 356 RKGVAINFVTNEDVGAMREL-EKFY--STQIEELPSDI 390
Score = 118 (46.6 bits), Expect = 5.0e-26, Sum P(3) = 5.0e-26
Identities = 27/92 (29%), Positives = 54/92 (58%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ Q I P + D+ + +G+GKT ++++ +Q + +V+ +AL++ PTR+LALQ
Sbjct: 47 AIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-SVKAPQALMLAPTRELALQ 105
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
++ V A+A + + V +G +S ++ L
Sbjct: 106 IQKVVMALAFHMDIKVHACIGGTSFVEDAEGL 137
Score = 74 (31.1 bits), Expect = 5.0e-26, Sum P(3) = 5.0e-26
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
ED + L+ A I+V TPGR+ D+I R F + + ++DE D +L ++ + +
Sbjct: 132 EDA-EGLRDA-QIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIF 188
Query: 178 QL 179
L
Sbjct: 189 TL 190
>TAIR|locus:2152099 [details] [associations]
symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
GermOnline:AT5G65900 Uniprot:Q9SB89
Length = 633
Score = 185 (70.2 bits), Expect = 5.4e-26, Sum P(3) = 5.4e-26
Identities = 56/187 (29%), Positives = 95/187 (50%)
Query: 226 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP-ERLESYKLICESKLKPLYLVALLQS 284
+ SAT + LA++ L P+++ E R ++ E LE + S ++ L+L+ L+
Sbjct: 337 LFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLTFLKR 396
Query: 285 L-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
G++K +VF S+ +ST L + ++ E G Q+ R+ T F + + +
Sbjct: 397 FQGKKKIMVFFSTCKSTKFHAELFRY---IKFDCLEIRGGIDQNKRTPTFLQFIKAETGI 453
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA-GQLGRCFTLLHKDEVKRF 402
L+ ++ RG+D V+ +V YD P YIHR GRTAR G G+ +L E+K F
Sbjct: 454 LLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELK-F 512
Query: 403 KKLLQKA 409
+ L+ A
Sbjct: 513 IQYLKAA 519
Score = 137 (53.3 bits), Expect = 5.4e-26, Sum P(3) = 5.4e-26
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
L V++LVATPGRL+DH+ T GF ++L +LV+DE DR+L + ++ L +L L
Sbjct: 273 LAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNL 328
Score = 90 (36.7 bits), Expect = 5.4e-26, Sum P(3) = 5.4e-26
Identities = 33/109 (30%), Positives = 50/109 (45%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-- 58
MG + + +Q + I P + D+ + TGSGKTL++ +P V+ L R R
Sbjct: 172 MGFARMTQIQA----KAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLY-RVKFTPRNG 226
Query: 59 --ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 105
LV+ PTR+LA+Q V + +VG +G E L K
Sbjct: 227 TGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAK 275
>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
helicase, putative" species:5833 "Plasmodium falciparum"
[GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
Uniprot:C6KTE4
Length = 601
Score = 198 (74.8 bits), Expect = 5.4e-26, Sum P(3) = 5.4e-26
Identities = 61/180 (33%), Positives = 88/180 (48%)
Query: 226 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES-YKLICESKLKPLYLVALLQS 284
+ SAT T L +L L P+F+ T+ ERL+ Y L+ E K + L L L+
Sbjct: 331 LFSATQTTKVESLIRLSLQKPIFIEV-TTKIATVERLQQGYALVDEDK-RFLLLFTFLKK 388
Query: 285 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS--GLQRQSVRSKTLKAFREGKIQ 342
+K +VF ++ S LLN+ I I Y G ++Q+ R K+ F K
Sbjct: 389 NMSKKIMVFFNNCMSVQFYNDLLNY-----IDIPTYCIHGKKKQNKRLKSFHDFSAAKCA 443
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEVK 400
+L+ ++ RG+D+ VN ++ YD P K YIHR GRT R GQ G L K E+K
Sbjct: 444 ILLCTNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCR-GQDSNGSAIIFLMKHELK 502
Score = 119 (46.9 bits), Expect = 5.4e-26, Sum P(3) = 5.4e-26
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNEN 186
++IL+ATPGRL+DH+ T+ F ++L L++DE DRLL+ ++ + +++ L +
Sbjct: 271 INILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPKKRQTA 330
Query: 187 RFSDAST 193
FS T
Sbjct: 331 LFSATQT 337
Score = 92 (37.4 bits), Expect = 5.4e-26, Sum P(3) = 5.4e-26
Identities = 30/109 (27%), Positives = 53/109 (48%)
Query: 2 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-- 58
G+ L F + + I L +D+ + TGSGKTL++ +P + L N ++ L
Sbjct: 162 GLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLVPSINILYN--IKFLPKN 219
Query: 59 ---ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 104
L++ PTR+L LQ+ V + + + G+ +G S +E + I
Sbjct: 220 GTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKKKFI 268
Score = 42 (19.8 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 234 DPNKLAQLDLHHPLFLTTGETRYKLP-ERLESY 265
DPNKL + H +T +K+ E +SY
Sbjct: 520 DPNKLINIQSHIQSIVTKNFHLHKMAREAFKSY 552
>UNIPROTKB|C6KTE4 [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
Length = 601
Score = 198 (74.8 bits), Expect = 5.4e-26, Sum P(3) = 5.4e-26
Identities = 61/180 (33%), Positives = 88/180 (48%)
Query: 226 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES-YKLICESKLKPLYLVALLQS 284
+ SAT T L +L L P+F+ T+ ERL+ Y L+ E K + L L L+
Sbjct: 331 LFSATQTTKVESLIRLSLQKPIFIEV-TTKIATVERLQQGYALVDEDK-RFLLLFTFLKK 388
Query: 285 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS--GLQRQSVRSKTLKAFREGKIQ 342
+K +VF ++ S LLN+ I I Y G ++Q+ R K+ F K
Sbjct: 389 NMSKKIMVFFNNCMSVQFYNDLLNY-----IDIPTYCIHGKKKQNKRLKSFHDFSAAKCA 443
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEVK 400
+L+ ++ RG+D+ VN ++ YD P K YIHR GRT R GQ G L K E+K
Sbjct: 444 ILLCTNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCR-GQDSNGSAIIFLMKHELK 502
Score = 119 (46.9 bits), Expect = 5.4e-26, Sum P(3) = 5.4e-26
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNEN 186
++IL+ATPGRL+DH+ T+ F ++L L++DE DRLL+ ++ + +++ L +
Sbjct: 271 INILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPKKRQTA 330
Query: 187 RFSDAST 193
FS T
Sbjct: 331 LFSATQT 337
Score = 92 (37.4 bits), Expect = 5.4e-26, Sum P(3) = 5.4e-26
Identities = 30/109 (27%), Positives = 53/109 (48%)
Query: 2 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-- 58
G+ L F + + I L +D+ + TGSGKTL++ +P + L N ++ L
Sbjct: 162 GLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLVPSINILYN--IKFLPKN 219
Query: 59 ---ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 104
L++ PTR+L LQ+ V + + + G+ +G S +E + I
Sbjct: 220 GTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKKKFI 268
Score = 42 (19.8 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 234 DPNKLAQLDLHHPLFLTTGETRYKLP-ERLESY 265
DPNKL + H +T +K+ E +SY
Sbjct: 520 DPNKLINIQSHIQSIVTKNFHLHKMAREAFKSY 552
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 215 (80.7 bits), Expect = 6.9e-26, Sum P(3) = 6.9e-26
Identities = 56/184 (30%), Positives = 93/184 (50%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SAT ++ LA L + + G T + +C+ K +++ L S
Sbjct: 566 LMFSATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSFLGS 625
Query: 285 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
+G +EK IVF + + L +L G I I G + Q R L F+ G + +
Sbjct: 626 VGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIH---GNKSQPERDFVLSQFKNGMVPI 682
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 403
++++D +RG+D++ + VVNYD P I+ YIHR GRTARAG G ++LL D +
Sbjct: 683 MIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLAN 742
Query: 404 KLLQ 407
+L++
Sbjct: 743 ELIK 746
Score = 106 (42.4 bits), Expect = 6.9e-26, Sum P(3) = 6.9e-26
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 183
L+ V+I++ATPGRL+D + + + L + YLV+DE DR+L ++ + ++ R D
Sbjct: 504 LKKGVEIVIATPGRLIDILESGKT-NLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPD 562
Query: 184 NENRFSDAS 192
+ A+
Sbjct: 563 RQTLMFSAT 571
Score = 90 (36.7 bits), Expect = 6.9e-26, Sum P(3) = 6.9e-26
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR--- 58
G + P+Q W + G RD+ + TGSGKTL++ LP + ++ + V LR
Sbjct: 403 GFPNPTPIQSQAWPIAL-KG---RDIIGLAKTGSGKTLAFLLPSIVHINAQPV--LREDD 456
Query: 59 ---ALVVLPTRDLALQVKD 74
LV+ PTR+LALQ+++
Sbjct: 457 GPIVLVLAPTRELALQIQE 475
>UNIPROTKB|F1MW45 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 IPI:IPI00726158 UniGene:Bt.74315
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:DAAA02045235
Ensembl:ENSBTAT00000009556 Uniprot:F1MW45
Length = 601
Score = 209 (78.6 bits), Expect = 7.5e-26, Sum P(2) = 7.5e-26
Identities = 61/200 (30%), Positives = 96/200 (48%)
Query: 226 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 279
+ SAT TQ+ L + L +P+ ++ E + K P RLE++ ++C++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMVCKADEKFNQLV 259
Query: 280 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 339
L++ +EK +VF S+ L + +KI G + R+K FR+
Sbjct: 260 HFLRNHKQEKHLVFFSTCACVEYYGKALETLVK-GVKIMCIHGKMKYK-RNKIFMEFRKL 317
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
+ +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G L E
Sbjct: 318 QSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEE 377
Query: 400 KRFKKLLQKADNDSCPIHSI 419
L A N CP+ +
Sbjct: 378 SYISFL---AINQKCPLQEM 394
Score = 158 (60.7 bits), Expect = 7.5e-26, Sum P(2) = 7.5e-26
Identities = 61/198 (30%), Positives = 93/198 (46%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR----ALVV 62
FP V TI + +D+ + TGSGKTL++ +PIV+ L R + + A+++
Sbjct: 29 FPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPIVEILLRREEKFKKSQVGAIII 88
Query: 63 LPTRDLALQVKDVFAAIA-PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
PTR+LA+Q+++V + P S L +G + P G EDV
Sbjct: 89 TPTRELAVQIEEVLSHFTKPFPQFSQILWIGG-----------RNP----G-----EDVA 128
Query: 122 QELQSAVDILVATPGRLMDHINA-TRGFTL----EHLCYLVVDETDRLLREAYQAWLPTV 176
+ + +I+VATPGRL D G L L LV+DE DRLL ++ + T+
Sbjct: 129 RFKELGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSINTI 188
Query: 177 LQ-LTRSDNENRFSDAST 193
L+ L + FS T
Sbjct: 189 LEFLPKQRRTGLFSATQT 206
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 203 (76.5 bits), Expect = 9.9e-26, Sum P(3) = 9.9e-26
Identities = 55/207 (26%), Positives = 101/207 (48%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPLYLVALLQ 283
++ +AT+ +LA L P + T+ E +E + + K L L+
Sbjct: 182 LLFTATMDSAMARLAGRLLREPERIDIAGTK-TTHEHIEQRLHVADDLHHKNRLLRHLIT 240
Query: 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
+ I+F+++ L L G + G Q+ R++T+ A ++G+I++
Sbjct: 241 DESLRRAIIFSATKRDAENLALELKAQGHSAAALH---GDMPQNARNRTIAAMKQGRIRL 297
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 403
LV++D RG+DV G+++V+N+D P + + Y+HR GRT RAG G + +EV
Sbjct: 298 LVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYLA 357
Query: 404 KLLQKADNDSCPIHSIPSSLIESLRPV 430
++ ++ + P H IP +E RP+
Sbjct: 358 RI-ERYIGQTLPEHHIPG--LEPSRPL 381
Score = 101 (40.6 bits), Expect = 9.9e-26, Sum P(3) = 9.9e-26
Identities = 32/94 (34%), Positives = 45/94 (47%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLR 58
G + PVQ A + L DL + TG+GKT ++ LP +Q LS+ R R
Sbjct: 20 GYTEPTPVQAAA----VPRALENVDLLATAQTGTGKTAAFVLPALQRLSSPPQGPGRGPR 75
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 92
LV+ PTR+LA QV D + + G +G
Sbjct: 76 VLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILG 109
Score = 94 (38.1 bits), Expect = 9.9e-26, Sum P(3) = 9.9e-26
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 165
L+ L + VD +VATPGRL+D ++ R L L LV+DE DR+L
Sbjct: 117 LRLLSAPVDFIVATPGRLVDLLDR-RSLDLSRLELLVLDEADRML 160
>UNIPROTKB|F1NQA6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 EMBL:AADN02025730
IPI:IPI00822952 Ensembl:ENSGALT00000039070 ArrayExpress:F1NQA6
Uniprot:F1NQA6
Length = 603
Score = 216 (81.1 bits), Expect = 1.2e-25, Sum P(3) = 1.2e-25
Identities = 58/190 (30%), Positives = 88/190 (46%)
Query: 228 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG- 286
SAT D + +L+L + ++ G R E +E L S+ L + L G
Sbjct: 347 SATFAHDVEEWCKLNLDSIVLVSVG-ARNSAAETVEQELLFVGSETGKLTAMRELVKKGF 405
Query: 287 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 346
+VF S+E L L + G + + + Q+Q R + +FR GKI VL+
Sbjct: 406 APPVLVFVQSIERAKELFHELIYEG-INVDVIHADKTQQQ--RDNVVHSFRAGKIWVLIC 462
Query: 347 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 406
+ + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+ + +
Sbjct: 463 TALLARGIDFKGVNMVINYDLPTSAVEYIHRIGRTGRAGHTGKAVTFFTEDDKPLLRSIA 522
Query: 407 QKADNDSCPI 416
CP+
Sbjct: 523 NVIQRAGCPV 532
Score = 126 (49.4 bits), Expect = 1.2e-25, Sum P(3) = 1.2e-25
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
F V + + I L R+L ++PTGSGKTL++ +P++ L + RAL++ PTR
Sbjct: 179 FQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFCIPLLTHLKQPMNKGFRALIISPTR 238
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 97
+LA Q +A G + + S A
Sbjct: 239 ELASQTHRELVKLADGTGFRIHMIQKASEAA 269
Score = 61 (26.5 bits), Expect = 1.2e-25, Sum P(3) = 1.2e-25
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 129 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE 167
DILV TP RL+ + L + +LVVDE+D+L +
Sbjct: 281 DILVTTPNRLIYLLKQDPPAIDLTSVEWLVVDESDKLFED 320
>UNIPROTKB|F6XWM4 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074969
Ensembl:ENSCAFT00000035837 EMBL:AAEX03014637 OMA:DADNVFA
Uniprot:F6XWM4
Length = 734
Score = 213 (80.0 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 60/200 (30%), Positives = 98/200 (49%)
Query: 226 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 279
+ SAT TQ+ L + L +P+ ++ E + K P RLE+Y ++C++ K LV
Sbjct: 335 LFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENYYMVCKADEKFNQLV 394
Query: 280 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 339
L++ +EK ++F S+ L + +KI G + R+K FR+
Sbjct: 395 HFLRNHKQEKHLIFFSTCACVEYYGKALEALVK-SVKIMCIHGKMKHK-RNKIFMEFRKL 452
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
+ +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G L E
Sbjct: 453 QSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARIGHGGSALVFLLPME- 511
Query: 400 KRFKKLLQKADNDSCPIHSI 419
+ + L+ N CP+ +
Sbjct: 512 ESYVTFLEI--NQKCPLQEM 529
Score = 153 (58.9 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 57/172 (33%), Positives = 86/172 (50%)
Query: 33 TGSGKTLSYALPIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVG-LSV 87
TGSGKTL++ +PI++ L R + + A+++ PTR+LA+QV +V A + S
Sbjct: 190 TGSGKTLAFVIPILEILLRREEKLKKNQVGAIIITPTRELAIQVDEVLAHFTKSFPQFSQ 249
Query: 88 GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-TR 146
L +G + AD++S R K + G +I+VATPGRL D
Sbjct: 250 ILWIGGRNPADDVS----RFKEQGG----------------NIIVATPGRLEDMFRRKVE 289
Query: 147 GFTL----EHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 193
G L + L LV+DE DRLL ++A + T+L+ L + FS T
Sbjct: 290 GLDLASCVKSLEVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQT 341
Score = 37 (18.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 330 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366
++ LK F++GKI + + +G+ G V D
Sbjct: 692 TRLLKKFKKGKI----TEEEFEKGLFSSGKGTVTTAD 724
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 229 (85.7 bits), Expect = 2.2e-25, Sum P(2) = 2.2e-25
Identities = 53/175 (30%), Positives = 96/175 (54%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SAT + + LA+ +++PL ++ + E++ + + K KP L L++
Sbjct: 189 LLFSATFSPEIRALAKGMVNNPLEISV-DAENSTAEKVTQWLTAVDKKRKPAVLTHLIKE 247
Query: 285 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 344
++ +VFT + ++L L G I G + Q R+K L AF++G +++L
Sbjct: 248 NNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIH---GNKSQGARTKALAAFKDGSVKIL 304
Query: 345 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
V++D RG+D++ + VVN+D P + Y+HR GRTARAG G+ +L+ DE+
Sbjct: 305 VATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADEL 359
Score = 126 (49.4 bits), Expect = 2.2e-25, Sum P(2) = 2.2e-25
Identities = 48/173 (27%), Positives = 82/173 (47%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ-VKDVFAAIAPAV 83
RD+ + TG+GKT + LP++Q LS+ + + V R L L +++ A I+ ++
Sbjct: 44 RDVMAAAQTGTGKTAGFTLPLLQRLSSSKGNKVSSNNV---RALILTPTRELAAQISESI 100
Query: 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 143
+ G + S+ + G+ +P+ + L+ VD+LVATPGRL+D N
Sbjct: 101 EV-YGKYLNLHSMV-----------VFGGVKINPQ--IARLRQGVDVLVATPGRLLDLYN 146
Query: 144 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 196
R L ++DE DR+L + + ++ D +N A TF P
Sbjct: 147 Q-RAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKDRQNLLFSA-TFSP 197
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 226 (84.6 bits), Expect = 2.5e-25, Sum P(2) = 2.5e-25
Identities = 66/209 (31%), Positives = 107/209 (51%)
Query: 225 MVLSATLTQDPNKLAQLDLHH-PLFLTTGETR-YKLPERLESYKLICESKLKPLYLVALL 282
M+ SAT T+ + +A++ L++ P+++ + R E LE ++C S+ + L L L
Sbjct: 301 MLFSATQTRKVDDIAKVSLNNSPVYVGVDDEREISTVEGLEQGYVVCPSERRFLLLYTFL 360
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+ +K IVF SS + LLN+ + I + E G Q+Q R+ T F +
Sbjct: 361 KKNLSKKIIVFLSSCNAVKYTAELLNY---IDIPVLELHGRQKQQKRTNTFYEFVNAEKG 417
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA-GQLGRCFTLLHKDEVKR 401
+L+ +D RG+D+ V+ ++ YD P K YIHR GRTAR G+ GR L E+
Sbjct: 418 ILICTDVAARGLDIPSVDWIIQYDPPDDPKEYIHRVGRTARGVGKKGRALLFLLPKELG- 476
Query: 402 FKKLLQKADNDSCPI--HSIPSSLIESLR 428
F K L+ A P+ + P S I +++
Sbjct: 477 FLKYLKLA---KVPLNEYEFPKSKIANVQ 502
Score = 134 (52.2 bits), Expect = 2.5e-25, Sum P(2) = 2.5e-25
Identities = 25/67 (37%), Positives = 44/67 (65%)
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G PE+ + L+ V++LVATPGRL+DH+ T+GF ++L L++DE DR+L ++
Sbjct: 228 GASKKPEE--ERLEKGVNLLVATPGRLLDHLQNTKGFITKNLKCLIIDEADRILEVGFEE 285
Query: 172 WLPTVLQ 178
+ +++
Sbjct: 286 EMHQIIK 292
Score = 115 (45.5 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
Identities = 40/129 (31%), Positives = 65/129 (50%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLR 58
MG + P+Q ++I P L +DL + TGSGKTL++ +P ++ L SN R
Sbjct: 137 MGFKKMTPIQA----KSILPLLEGKDLLGAARTGSGKTLAFLIPAIEVLVKSNFKPRNGT 192
Query: 59 ALVVL-PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
++++ PTR+LALQ+ V + + G+ +G +S E L K L + P
Sbjct: 193 GVIIISPTRELALQIYGVARELMKYHTQTHGIVIGGASKKPEEERLEKGVNL---LVATP 249
Query: 118 EDVLQELQS 126
+L LQ+
Sbjct: 250 GRLLDHLQN 258
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 217 (81.4 bits), Expect = 2.9e-25, Sum P(3) = 2.9e-25
Identities = 57/181 (31%), Positives = 97/181 (53%)
Query: 218 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLK-PL 276
PY + ++ SATL Q +LA ++ P + + ER+E K K PL
Sbjct: 178 PYDKRQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTA-ERVEQVLYHVGRKEKFPL 236
Query: 277 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 336
L+ LL+ G E+ ++F ++ L LN + ++ SG Q R K L+ F
Sbjct: 237 -LLGLLRKEGMERTMIFVNTKREAEFLDERLNA-NDFPCRV--ISGDVEQRKRLKILEDF 292
Query: 337 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 396
+ GK+ +++++D +RG+ ++GV++V+NYD P + Y+HR GRTARAG G+ ++ +
Sbjct: 293 KSGKLPIMIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMADE 352
Query: 397 D 397
D
Sbjct: 353 D 353
Score = 91 (37.1 bits), Expect = 2.9e-25, Sum P(3) = 2.9e-25
Identities = 19/55 (34%), Positives = 35/55 (63%)
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
L+ D++V TPGRL+D++ + ++L+ + LV+DE DR+ + A L +L+
Sbjct: 121 LKEGADVVVGTPGRLIDYLKQ-KVYSLKEIEMLVIDEADRMFDMGFIADLRFILR 174
Score = 82 (33.9 bits), Expect = 2.9e-25, Sum P(3) = 2.9e-25
Identities = 25/95 (26%), Positives = 47/95 (49%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--SNRAV--RCL 57
G S P+Q ++T+ L +D+ + TG+GKT ++ + + L S R R
Sbjct: 20 GFSDCTPIQ----EKTLPLSLGGKDVAGQAQTGTGKTAAFLISLFTKLLRSGRGGERRHP 75
Query: 58 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 92
RA+++ PTR+L +Q++ + G ++ G
Sbjct: 76 RAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYG 110
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 194 (73.4 bits), Expect = 3.1e-25, Sum P(2) = 3.1e-25
Identities = 55/187 (29%), Positives = 96/187 (51%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SAT + LA L P ++ + + ++ + E + + L L L+
Sbjct: 200 LMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYWVTEERKREL-LSELIGV 258
Query: 285 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 344
++ +VF + ES + L L G IK G + Q R+K L+ F EGK++VL
Sbjct: 259 NNWQQVLVFAGTKESANTLAKELKLDG---IKAALCHGDKTQGARNKALEQFSEGKVRVL 315
Query: 345 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDE--VKR 401
V++D RG+D+ + VVN+ P + Y+HR GRT RAG+ G +L+ KDE ++
Sbjct: 316 VATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLVSPKDERFLEN 375
Query: 402 FKKLLQK 408
++L+++
Sbjct: 376 IEQLIER 382
Score = 164 (62.8 bits), Expect = 3.1e-25, Sum P(2) = 3.1e-25
Identities = 49/168 (29%), Positives = 91/168 (54%)
Query: 2 GISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
G +L P+Q QE I P + + DL ++ TG+GKT +++LPI+ ++ +A ++
Sbjct: 20 GYKNLTPIQ----QEAI-PVIRQGVDLLASAQTGTGKTAAFSLPILDAIA-KANHAAKSS 73
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
T + + + K A+ L+ + + +AD I + + +++G+ Y +
Sbjct: 74 TT-STDENSAEEKSASGQAIRALILTPTRELA-NQVADNIKQFSQYLPIKSGVVYGGGKM 131
Query: 121 LQE---LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 165
+ L+ +D+LVATPGRL++H+ A R L + +LV+DE DR+L
Sbjct: 132 ASQTKMLKQGLDVLVATPGRLLEHL-ALRNVDLSQVKFLVLDEADRML 178
>UNIPROTKB|Q2NL08 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:BC111255 IPI:IPI00726158
RefSeq:NP_001039472.1 UniGene:Bt.74315 PRIDE:Q2NL08 GeneID:508581
KEGG:bta:508581 CTD:57696 HOGENOM:HOG000268803 HOVERGEN:HBG107796
InParanoid:Q2NL08 KO:K14809 OrthoDB:EOG4WH8KN NextBio:20868584
Uniprot:Q2NL08
Length = 601
Score = 209 (78.6 bits), Expect = 3.2e-25, Sum P(2) = 3.2e-25
Identities = 61/200 (30%), Positives = 96/200 (48%)
Query: 226 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 279
+ SAT TQ+ L + L +P+ ++ E + K P RLE++ ++C++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMVCKADEKFNQLV 259
Query: 280 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 339
L++ +EK +VF S+ L + +KI G + R+K FR+
Sbjct: 260 HFLRNHKQEKHLVFFSTCACVEYYGKALETLVK-GVKIMCIHGKMKYK-RNKIFMEFRKL 317
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
+ +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G L E
Sbjct: 318 QSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEE 377
Query: 400 KRFKKLLQKADNDSCPIHSI 419
L A N CP+ +
Sbjct: 378 SYISFL---AINQKCPLQEM 394
Score = 152 (58.6 bits), Expect = 3.2e-25, Sum P(2) = 3.2e-25
Identities = 60/198 (30%), Positives = 92/198 (46%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR----ALVV 62
FP V TI + +D+ + TGSGKTL++ +PI + L R + + A+++
Sbjct: 29 FPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPIEEILLRREEKFKKSQVGAIII 88
Query: 63 LPTRDLALQVKDVFAAIA-PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
PTR+LA+Q+++V + P S L +G + P G EDV
Sbjct: 89 TPTRELAVQIEEVLSHFTKPFPQFSQILWIGG-----------RNP----G-----EDVA 128
Query: 122 QELQSAVDILVATPGRLMDHINA-TRGFTL----EHLCYLVVDETDRLLREAYQAWLPTV 176
+ + +I+VATPGRL D G L L LV+DE DRLL ++ + T+
Sbjct: 129 RFKELGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSINTI 188
Query: 177 LQ-LTRSDNENRFSDAST 193
L+ L + FS T
Sbjct: 189 LEFLPKQRRTGLFSATQT 206
>GENEDB_PFALCIPARUM|PFD1070w [details] [associations]
symbol:PFD1070w "eukaryotic initiation factor,
putative" species:5833 "Plasmodium falciparum" [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 194 (73.4 bits), Expect = 4.2e-25, Sum P(3) = 4.2e-25
Identities = 63/226 (27%), Positives = 110/226 (48%)
Query: 210 VERGFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
+ +GFK++ Y P ++ SATL Q+ ++ +H P+ + L
Sbjct: 172 LNKGFKEQVYDIYRFLSPNTQIILSSATLPQEVLEITNKFMHKPVKILVKRDELTLEGIK 231
Query: 263 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKI-KEYS 321
+ + I + + K L L +SL + +VF ++ ++ L E + K ++
Sbjct: 232 QFFVSIEKEQWKYETLADLYESLTITQAVVFCNT---QMKVDWLTKKMLESNFTVCKMHA 288
Query: 322 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 381
G+ QS R + FR+ K +VL+S+D RG+DV+ V+ VVNYD P ++YIHR GR+
Sbjct: 289 GMS-QSERDDIMLKFRQCKFRVLISTDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRS 347
Query: 382 ARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESL 427
R G+ G + D++K + + Q S I +P ++ E L
Sbjct: 348 GRFGRKGVAINFVKNDDIKILRDIEQYY---STQIDEMPMNITELL 390
Score = 119 (46.9 bits), Expect = 4.2e-25, Sum P(3) = 4.2e-25
Identities = 28/92 (30%), Positives = 53/92 (57%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ Q I P L RD+ + S +G+GKT +A+ + + NR + + +++ PTR+LA Q
Sbjct: 42 AIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGALNCV-NRNLNETQVIILSPTRELAEQ 100
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
+ V A+A + +++ +G ++D+I L
Sbjct: 101 TQKVCLALADYIHVTIYCCIGGKKMSDDIKAL 132
Score = 76 (31.8 bits), Expect = 4.2e-25, Sum P(3) = 4.2e-25
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
D ++ L + V ++ TPGR+ +N R +++ LV+DE D +L + ++
Sbjct: 127 DDIKALNNGVHVISGTPGRIYHMLNL-RHLKCKYIKQLVIDEADEMLNKGFK 177
>UNIPROTKB|Q8IFN9 [details] [associations]
symbol:PFD1070w "Eukaryotic initiation factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006446
"regulation of translational initiation" evidence=ISS] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 194 (73.4 bits), Expect = 4.2e-25, Sum P(3) = 4.2e-25
Identities = 63/226 (27%), Positives = 110/226 (48%)
Query: 210 VERGFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
+ +GFK++ Y P ++ SATL Q+ ++ +H P+ + L
Sbjct: 172 LNKGFKEQVYDIYRFLSPNTQIILSSATLPQEVLEITNKFMHKPVKILVKRDELTLEGIK 231
Query: 263 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKI-KEYS 321
+ + I + + K L L +SL + +VF ++ ++ L E + K ++
Sbjct: 232 QFFVSIEKEQWKYETLADLYESLTITQAVVFCNT---QMKVDWLTKKMLESNFTVCKMHA 288
Query: 322 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 381
G+ QS R + FR+ K +VL+S+D RG+DV+ V+ VVNYD P ++YIHR GR+
Sbjct: 289 GMS-QSERDDIMLKFRQCKFRVLISTDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRS 347
Query: 382 ARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESL 427
R G+ G + D++K + + Q S I +P ++ E L
Sbjct: 348 GRFGRKGVAINFVKNDDIKILRDIEQYY---STQIDEMPMNITELL 390
Score = 119 (46.9 bits), Expect = 4.2e-25, Sum P(3) = 4.2e-25
Identities = 28/92 (30%), Positives = 53/92 (57%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ Q I P L RD+ + S +G+GKT +A+ + + NR + + +++ PTR+LA Q
Sbjct: 42 AIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGALNCV-NRNLNETQVIILSPTRELAEQ 100
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
+ V A+A + +++ +G ++D+I L
Sbjct: 101 TQKVCLALADYIHVTIYCCIGGKKMSDDIKAL 132
Score = 76 (31.8 bits), Expect = 4.2e-25, Sum P(3) = 4.2e-25
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
D ++ L + V ++ TPGR+ +N R +++ LV+DE D +L + ++
Sbjct: 127 DDIKALNNGVHVISGTPGRIYHMLNL-RHLKCKYIKQLVIDEADEMLNKGFK 177
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 203 (76.5 bits), Expect = 4.4e-25, Sum P(3) = 4.4e-25
Identities = 58/189 (30%), Positives = 90/189 (47%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SAT ++ LA+ L P G T K + + I + K L+ LL+
Sbjct: 347 LLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQ 406
Query: 285 LGE-EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
L + K ++F + ++ L G + I G + QS R + L F+ G+ +
Sbjct: 407 LMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIH---GDKTQSERDRVLAEFKSGRSPI 463
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK--- 400
+ ++D RG+DV+ + VVNYD P ++ YIHR GRT RAG G FT D K
Sbjct: 464 MTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFAR 523
Query: 401 RFKKLLQKA 409
K+LQ+A
Sbjct: 524 ELVKILQEA 532
Score = 108 (43.1 bits), Expect = 4.4e-25, Sum P(3) = 4.4e-25
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
+++L+ V+I++ATPGRL+D + L+ + YLV+DE DR+L ++ + ++
Sbjct: 282 IRDLRRGVEIVIATPGRLIDMLECQHT-NLKRVTYLVLDEADRMLDMGFEPQIRKIVSQI 340
Query: 181 RSDNE 185
R D +
Sbjct: 341 RPDRQ 345
Score = 88 (36.0 bits), Expect = 4.4e-25, Sum P(3) = 4.4e-25
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-- 58
+G + P+Q W + G RDL + TGSGKTL+Y LP + +S + R +
Sbjct: 183 LGFTEPTPIQAQGWPMAL-KG---RDLIGIAETGSGKTLAYLLPALVHVSAQP-RLGQDD 237
Query: 59 ---ALVVLPTRDLALQVKD 74
L++ PTR+LA+Q+++
Sbjct: 238 GPIVLILAPTRELAVQIQE 256
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 205 (77.2 bits), Expect = 4.9e-25, Sum P(3) = 4.9e-25
Identities = 56/213 (26%), Positives = 101/213 (47%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
+++SAT +LA+ L +P+ + G + + Y + Y+ QS
Sbjct: 235 VMMSATWPDGVRRLAKSYLRNPMIVYVGTLDLAVSGVVLKYLQFDKDIFTWKYMQVNAQS 294
Query: 285 LGEEKCIVFTSSVESTHRLCT-LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
+ +VF H + + + G + ++ G + Q R + L F++GK+++
Sbjct: 295 FCTDVVVVFVQ----LHVVADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRI 350
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 403
LV++D +RG+DV + +V N+D P I+ Y+HR GRT RAG+ G+ TL+ K + K
Sbjct: 351 LVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAAS 410
Query: 404 KLLQKADNDSCPIHSIPSSLIESLRPVYKSGDV 436
+L+ +P LI S+ YK +
Sbjct: 411 ELIDILQRAK---QVVPDELI-SMAERYKQHQI 439
Score = 102 (41.0 bits), Expect = 4.9e-25, Sum P(3) = 4.9e-25
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
D + + + VDI++ATPGRL D + L+ + YLV+DE DR+L ++ +
Sbjct: 165 DRKAQINVVTKGVDIVIATPGRLND-LQMNNFINLKSITYLVLDEADRMLDMGFEPQIMK 223
Query: 176 VLQLTRSDNENRFSDAS 192
+L R D + A+
Sbjct: 224 ILIDVRPDRQTVMMSAT 240
Score = 84 (34.6 bits), Expect = 4.9e-25, Sum P(3) = 4.9e-25
Identities = 28/77 (36%), Positives = 39/77 (50%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP-IVQTLSNRAVRCLRA- 59
G P+Q W I G+ DL + TG+GKTL+Y +P + S + R
Sbjct: 72 GFQKPTPIQSQAWP-IILQGI---DLIGIAQTGTGKTLAYLMPGFIHLASQPIPKDKRGG 127
Query: 60 ---LVVLPTRDLALQVK 73
LV+ PTR+LALQV+
Sbjct: 128 PGMLVLAPTRELALQVE 144
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 207 (77.9 bits), Expect = 5.2e-25, Sum P(3) = 5.2e-25
Identities = 58/199 (29%), Positives = 92/199 (46%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC-----ESKLKPLYLV 279
++ SAT ++ +LA+ L + + + G + +C E KLK L
Sbjct: 463 LMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSD 522
Query: 280 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 339
S K I+F + L + FG ++ G + QS R L+ FR G
Sbjct: 523 IYDTSESPGKIIIFVETKRRVDNLVRFIRSFG---VRCGAIHGDKSQSERDFVLREFRSG 579
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
K +LV++D RG+DV+G+ V+N+D P + YIHR GRT R+ G F K+
Sbjct: 580 KSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNA 639
Query: 400 KRFKKL---LQKADNDSCP 415
K+ K L L++A+ + P
Sbjct: 640 KQAKALVDVLREANQEINP 658
Score = 112 (44.5 bits), Expect = 5.2e-25, Sum P(3) = 5.2e-25
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
+++LQ +I++ATPGRL+D ++A G T L+ YLV+DE DR+L ++ + ++
Sbjct: 398 MRDLQRGCEIVIATPGRLIDFLSA--GSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQ 455
Query: 180 TRSDNE 185
R D +
Sbjct: 456 IRPDRQ 461
Score = 83 (34.3 bits), Expect = 5.2e-25, Sum P(3) = 5.2e-25
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 33 TGSGKTLSYALPIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDV 75
TGSGKTL Y LP + ++N+ ALV+ PTR+LA Q++ V
Sbjct: 327 TGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQV 373
>MGI|MGI:1351337 [details] [associations]
symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 24"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1351337
GO:GO:0005524 GO:GO:0003723 EMBL:CH466549 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 CTD:57062
HOGENOM:HOG000290702 HOVERGEN:HBG104200 EMBL:AF214732 EMBL:BC055048
EMBL:BC055317 EMBL:U46690 IPI:IPI00380228 RefSeq:NP_001152974.1
RefSeq:NP_065240.2 UniGene:Mm.3935 UniGene:Mm.475067
ProteinModelPortal:Q9ESV0 SMR:Q9ESV0 PhosphoSite:Q9ESV0
PaxDb:Q9ESV0 PRIDE:Q9ESV0 Ensembl:ENSMUST00000044923 GeneID:27225
KEGG:mmu:27225 GeneTree:ENSGT00550000074847 InParanoid:Q7TM97
OrthoDB:EOG45TCMP NextBio:305144 Bgee:Q9ESV0 CleanEx:MM_DDX24
Genevestigator:Q9ESV0 GermOnline:ENSMUSG00000041645 Uniprot:Q9ESV0
Length = 857
Score = 243 (90.6 bits), Expect = 6.0e-25, Sum P(3) = 6.0e-25
Identities = 83/304 (27%), Positives = 142/304 (46%)
Query: 129 DILVATPGRLMDHINATRGF--TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
+I++ATPGRL + + L L LV+DE DR++ + + A L +L++ N++
Sbjct: 439 EIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEML---NDS 495
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
+++ + L F + T+ R K ++ K L Q K+
Sbjct: 496 QYNPSRQTL--VFSATLTLVHQAPARILHKKHVKKMDKTDKLDLLMQ---KVGMRGKPKV 550
Query: 247 LFLTTGETRYKLPERLESYKLICESKLKPLYLVA-LLQSLGEEKCIVFTSSVESTHRLCT 305
+ LT E E L K+ CE+ K LYL L+Q G + +VF +S+ RL
Sbjct: 551 IDLTRNEGTV---ETLTETKIHCETDEKDLYLYYFLMQYPG--RSLVFANSISCIKRLSG 605
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LL + + + Q R + L+ F + VL+++D RG+D+ V +V++Y
Sbjct: 606 LLKVLDVMPLTLH---ACMHQKQRLRNLEQFARLQDCVLLATDVAARGLDIPKVQHVIHY 662
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS-CPIHSIPSSLI 424
P + YIHR+GRTARA G L+ ++V FKK+ + D P+ + S +
Sbjct: 663 QVPRTSEIYIHRSGRTARAASEGLSLMLIGPEDVINFKKIYKTLQKDEDIPLFPVQSKYM 722
Query: 425 ESLR 428
+ ++
Sbjct: 723 DVVK 726
Score = 82 (33.9 bits), Expect = 6.0e-25, Sum P(3) = 6.0e-25
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
R L LV+ PTR+LA+QV+ A+A G++ + VG S + L + P++
Sbjct: 386 RPLLGLVLTPTRELAIQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEI 440
Score = 74 (31.1 bits), Expect = 6.0e-25, Sum P(3) = 6.0e-25
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTL 49
+G S+ P+Q T+ P + ++ D+ + TGSGKTL++A+P++ ++
Sbjct: 211 LGFSAPTPIQAL----TLAPAIRDKLDILGAAETGSGKTLAFAIPMIHSV 256
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 228 (85.3 bits), Expect = 6.6e-25, Sum P(3) = 6.6e-25
Identities = 56/213 (26%), Positives = 106/213 (49%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
+++SAT +LA+ L +P+ + G +E ++ + K ++ + S
Sbjct: 421 VMMSATWPDGVRRLAKSYLRNPMIVYVGTLDLAAVNTVEQKVIVINEEEKKAFMENFIDS 480
Query: 285 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
+ ++K I+F + + + L G + ++ G + Q R + L F++GK+++
Sbjct: 481 MKPKDKAIIFVGKKSTADDIASDLGVQG---VPVQSLHGDREQCDREQALDDFKKGKVRI 537
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 403
LV++D +RG+DV + +V N+D P I+ Y+HR GRT RAG+ G+ TL+ K + K
Sbjct: 538 LVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAAS 597
Query: 404 KLLQKADNDSCPIHSIPSSLIESLRPVYKSGDV 436
+L+ +P LI S+ YK +
Sbjct: 598 ELIDILQRAK---QVVPDELI-SMAERYKQHQI 626
Score = 84 (34.6 bits), Expect = 6.6e-25, Sum P(3) = 6.6e-25
Identities = 28/77 (36%), Positives = 39/77 (50%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP-IVQTLSNRAVRCLRA- 59
G P+Q W I G+ DL + TG+GKTL+Y +P + S + R
Sbjct: 259 GFQKPTPIQSQAWP-IILQGI---DLIGIAQTGTGKTLAYLMPGFIHLASQPIPKDKRGG 314
Query: 60 ---LVVLPTRDLALQVK 73
LV+ PTR+LALQV+
Sbjct: 315 PGMLVLAPTRELALQVE 331
Score = 83 (34.3 bits), Expect = 6.6e-25, Sum P(3) = 6.6e-25
Identities = 22/77 (28%), Positives = 38/77 (49%)
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175
D + + + VDI++ATPGRL D + L+ + YL +E DR+L ++ +
Sbjct: 352 DRKAQINVVTKGVDIVIATPGRLND-LQMNNFINLKSITYLA-NEADRMLDMGFEPQIMK 409
Query: 176 VLQLTRSDNENRFSDAS 192
+L R D + A+
Sbjct: 410 ILIDVRPDRQTVMMSAT 426
>DICTYBASE|DDB_G0292992 [details] [associations]
symbol:helA "putative RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
Length = 1091
Score = 236 (88.1 bits), Expect = 6.7e-25, Sum P(2) = 6.7e-25
Identities = 85/288 (29%), Positives = 132/288 (45%)
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
ED +L DI++ATPGRLM H+ T G +L + Y+V DE DRL + L +L
Sbjct: 341 EDQFTDLARNPDIIIATPGRLMHHLLET-GMSLSKVQYIVFDEADRLFEMGFNEQLTEIL 399
Query: 178 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237
S+N ++T LPS L R G+ P+L+ + ++++ +
Sbjct: 400 SKL-SENRQTLLFSAT-LPSL---LVDFVRAGLNN-------PKLINLDTDTKISENLS- 446
Query: 238 LAQLDLHHP------LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 291
L+ L H LFL + YK P+ L + + + + Q + I
Sbjct: 447 LSFFTLRHEEKLGVLLFLLK-DIIYKKPQ-LPTTETTTTTTTNN---ESNQQQQKKSSTI 501
Query: 292 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 351
+F S+ + LL G I Y R L FR ++ V+V +D
Sbjct: 502 IFVSTKYHVEFIHILLERAGIASTYIHGYLD---PVARKINLAKFRSHQVGVMVVTDLAA 558
Query: 352 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
RG+D+ ++NV+N+D P K +IHR GR ARAG+ G ++L+ DEV
Sbjct: 559 RGIDIPLLDNVINFDFPPKEKIFIHRVGRVARAGRSGIAYSLVSPDEV 606
Score = 127 (49.8 bits), Expect = 6.7e-25, Sum P(2) = 6.7e-25
Identities = 31/104 (29%), Positives = 57/104 (54%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPT 65
F V + +++I L D+ + TGSGKT ++ +P++Q L + + +RA+++ PT
Sbjct: 250 FNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQKLGDHSTTVGVRAVILSPT 309
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
R+LA+Q V + L L VG S+ D+ ++L + P +
Sbjct: 310 RELAIQTFKVVKDFSQGTQLRTILIVGGDSMEDQFTDLARNPDI 353
Score = 42 (19.8 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 268 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312
+ ES+ K LYL +LG E S +++ RL L + E
Sbjct: 757 VIESQQKKLYLQQSETNLGPENEEFDYSKLDTRKRLLQLTENITE 801
>UNIPROTKB|F1NJA0 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074969 IPI:IPI00590534
OMA:CACVEYW EMBL:AADN02034882 Ensembl:ENSGALT00000005224
Uniprot:F1NJA0
Length = 591
Score = 214 (80.4 bits), Expect = 6.8e-25, Sum P(2) = 6.8e-25
Identities = 66/215 (30%), Positives = 99/215 (46%)
Query: 226 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 279
+ SAT TQ+ L + L +P+ ++ E K P RLE+Y +IC++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAATNTQKTPTRLENYYMICKADEKFNQLV 259
Query: 280 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 339
L+ +EK +VF S+ L + ++KI G + R+K FR
Sbjct: 260 HFLRQHKQEKHLVFFSTCACVEYYGKALESLIK-QVKIMCIHGKMKHK-RNKIFTEFRRL 317
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
+LV +D M RG+D+ V+ V+ YD P+ ++HR GRTAR G G L E
Sbjct: 318 AGGILVCTDVMARGIDIPEVHWVLQYDPPSSASAFVHRCGRTARIGNAGSALVFLLPMEE 377
Query: 400 KRFKKLLQKADNDSCPIHSI-PSSLIESLRPVYKS 433
L + N CP+ + P + L P KS
Sbjct: 378 SYINFL---SINQKCPMQEMQPQRNVLDLLPKLKS 409
Score = 143 (55.4 bits), Expect = 6.8e-25, Sum P(2) = 6.8e-25
Identities = 60/204 (29%), Positives = 96/204 (47%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-- 58
+G + PVQ A TI + +D+ + TGSGKTL++ +PI++ L R + +
Sbjct: 27 LGFDRMTPVQSA----TIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKMQ 82
Query: 59 --ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 116
A+++ PTR+LA+Q+ +V + S+++ L G +
Sbjct: 83 VGAIIITPTRELAIQIDEVLTHFTKHF--------------PKFSQIL----LIGG--RN 122
Query: 117 P-EDVLQELQSAVDILVATPGRLMDHINATR-GFTL----EHLCYLVVDETDRLLREAYQ 170
P EDV + + +I+VATPGRL D G L + L LV+DE DRLL ++
Sbjct: 123 PMEDVEKFKEHGGNIIVATPGRLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFE 182
Query: 171 AWLPTVLQ-LTRSDNENRFSDAST 193
+ L +L L + FS T
Sbjct: 183 SSLNAILAFLPKQRRTGLFSATQT 206
>UNIPROTKB|Q5ZLN8 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AJ719696 IPI:IPI00590534 RefSeq:NP_001006185.1
UniGene:Gga.42731 ProteinModelPortal:Q5ZLN8 STRING:Q5ZLN8
PRIDE:Q5ZLN8 GeneID:416820 KEGG:gga:416820 InParanoid:Q5ZLN8
NextBio:20820225 Uniprot:Q5ZLN8
Length = 591
Score = 214 (80.4 bits), Expect = 6.8e-25, Sum P(2) = 6.8e-25
Identities = 66/215 (30%), Positives = 99/215 (46%)
Query: 226 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 279
+ SAT TQ+ L + L +P+ ++ E K P RLE+Y +IC++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAATNTQKTPTRLENYYMICKADEKFNQLV 259
Query: 280 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 339
L+ +EK +VF S+ L + ++KI G + R+K FR
Sbjct: 260 HFLRQHKQEKHLVFFSTCACVEYYGKALESLIK-QVKIMCIHGKMKHK-RNKIFTEFRRL 317
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
+LV +D M RG+D+ V+ V+ YD P+ ++HR GRTAR G G L E
Sbjct: 318 AGGILVCTDVMARGIDIPEVHWVLQYDPPSSASAFVHRCGRTARIGNAGSALVFLLPMEE 377
Query: 400 KRFKKLLQKADNDSCPIHSI-PSSLIESLRPVYKS 433
L + N CP+ + P + L P KS
Sbjct: 378 SYINFL---SINQKCPMQEMQPQRNVLDLLPKLKS 409
Score = 143 (55.4 bits), Expect = 6.8e-25, Sum P(2) = 6.8e-25
Identities = 60/204 (29%), Positives = 96/204 (47%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-- 58
+G + PVQ A TI + +D+ + TGSGKTL++ +PI++ L R + +
Sbjct: 27 LGFDRMTPVQSA----TIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKMQ 82
Query: 59 --ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 116
A+++ PTR+LA+Q+ +V + S+++ L G +
Sbjct: 83 VGAIIITPTRELAIQIDEVLTHFTKHF--------------PKFSQIL----LIGG--RN 122
Query: 117 P-EDVLQELQSAVDILVATPGRLMDHINATR-GFTL----EHLCYLVVDETDRLLREAYQ 170
P EDV + + +I+VATPGRL D G L + L LV+DE DRLL ++
Sbjct: 123 PMEDVEKFKEHGGNIIVATPGRLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFE 182
Query: 171 AWLPTVLQ-LTRSDNENRFSDAST 193
+ L +L L + FS T
Sbjct: 183 SSLNAILAFLPKQRRTGLFSATQT 206
>UNIPROTKB|Q8TDD1 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0005102
"receptor binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
"RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
Length = 881
Score = 187 (70.9 bits), Expect = 7.2e-25, Sum P(3) = 7.2e-25
Identities = 53/178 (29%), Positives = 90/178 (50%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SATL + + A+ L P+ + + KL E+L++ + K L+ LL +
Sbjct: 275 VLFSATLPKLLVEFARAGLTEPVLIRL-DVDTKLNEQLKTSFFLVREDTKAAVLLHLLHN 333
Query: 285 L--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE-YSGLQRQSVRSKTLKAFREGKI 341
+ +++ +VF ++ L LL R+ YS L + R L F GK
Sbjct: 334 VVRPQDQTVVFVATKHHAEYLTELLT---TQRVSCAHIYSALD-PTARKINLAKFTLGKC 389
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
L+ +D RG+D+ ++NV+NY PA K ++HR GR ARAG+ G ++L+ DE+
Sbjct: 390 STLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEI 447
Score = 126 (49.4 bits), Expect = 7.2e-25, Sum P(3) = 7.2e-25
Identities = 31/104 (29%), Positives = 53/104 (50%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPT 65
+ V + ++TI L +D+ + TGSGKT + LP+ + L + + RAL++ PT
Sbjct: 116 YKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTHSAQTGARALILSPT 175
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
R+LALQ + GL L +G + D+ + L + P +
Sbjct: 176 RELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDI 219
Score = 94 (38.1 bits), Expect = 7.2e-25, Sum P(3) = 7.2e-25
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
ED L DI++ATPGRL+ H+ L+ + Y+V DE DRL + L ++
Sbjct: 207 EDQFAALHENPDIIIATPGRLV-HVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEII 265
>RGD|727929 [details] [associations]
symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 24"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:727929 GO:GO:0005524
GO:GO:0005737 GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH473982 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14805
CTD:57062 HOGENOM:HOG000290702 HOVERGEN:HBG104200 OMA:DQQEERR
GeneTree:ENSGT00550000074847 OrthoDB:EOG45TCMP EMBL:BC097262
EMBL:AY341876 IPI:IPI00200634 RefSeq:NP_954550.1 UniGene:Rn.100166
Ensembl:ENSRNOT00000012256 GeneID:373065 KEGG:rno:373065
UCSC:RGD:727929 InParanoid:Q6VEU8 NextBio:692388
Genevestigator:Q6VEU8 Uniprot:Q6VEU8
Length = 851
Score = 243 (90.6 bits), Expect = 7.3e-25, Sum P(3) = 7.3e-25
Identities = 87/305 (28%), Positives = 144/305 (47%)
Query: 129 DILVATPGRLMDHINATRGF--TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
+I++ATPGRL + I L L LV+DE DR++ + + A L +L++ N++
Sbjct: 433 EIVIATPGRLWELIKEKHPHLSNLRQLRCLVIDEADRMVEKDHFAELSQLLEML---NDS 489
Query: 187 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 246
+++ L F + T+ R K + KM +A L K+
Sbjct: 490 QYNPNRQTL--VFSATLTLVHQAPARILHKK---HVKKMDKTAKLDLLMQKIGMRGKPKV 544
Query: 247 LFLTTGETRYKLPERLESYKLICESKLKPLYLVA-LLQSLGEEKCIVFTSSVESTHRLCT 305
+ LT E E L K+ CE+ K LYL L+Q G + +VF +S+ RL
Sbjct: 545 IDLTRNEGTV---ETLTETKIHCETDEKDLYLYYFLMQYPG--RSLVFANSISCIKRLSG 599
Query: 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365
LL + + + Q R + L+ F + VL+++D RG+D+ V +V++Y
Sbjct: 600 LLKVLDIMPLTLH---ACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHY 656
Query: 366 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ--KADNDSCPIHSIPSSL 423
P + YIHR+GRTARA G L+ ++V FKK+ + K D D P+ + S
Sbjct: 657 QVPRTSEIYIHRSGRTARATSEGLSLMLIGPEDVINFKKIYKTLKKDED-IPLFPVQSKY 715
Query: 424 IESLR 428
++ ++
Sbjct: 716 MDMVK 720
Score = 81 (33.6 bits), Expect = 7.3e-25, Sum P(3) = 7.3e-25
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
R L LV+ PTR+LA+QV+ A+A G++ + VG S + L + P++
Sbjct: 380 RPLLGLVLTPTRELAVQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEI 434
Score = 74 (31.1 bits), Expect = 7.3e-25, Sum P(3) = 7.3e-25
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTL 49
+G S+ P+Q T+ P + ++ D+ + TGSGKTL++A+P++ ++
Sbjct: 210 LGFSAPTPIQAL----TLAPAIRDKLDILGAAETGSGKTLAFAIPMIHSV 255
>DICTYBASE|DDB_G0274325 [details] [associations]
symbol:ddx52 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274325 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0003723
EMBL:AAFI02000012 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14779 RefSeq:XP_643949.1
ProteinModelPortal:Q86IZ9 EnsemblProtists:DDB0234211 GeneID:8619377
KEGG:ddi:DDB_G0274325 OMA:NGITSHE Uniprot:Q86IZ9
Length = 668
Score = 219 (82.2 bits), Expect = 7.6e-25, Sum P(3) = 7.6e-25
Identities = 59/174 (33%), Positives = 88/174 (50%)
Query: 220 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 279
P+L + SAT+ Q +L + +P+ + GE + + + + K L +
Sbjct: 373 PKLKICLFSATMNQQVEELGHSIMKNPIKIIIGEQNAAAITVDQKLIYVGKEEGKLLAVR 432
Query: 280 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 339
L+Q E ++FT S E H L L G I + + Q R +K FR G
Sbjct: 433 QLIQKGLEPPILIFTQSKERAHDLFQELIFDG---INVDVIHSERTQFQRDTIVKKFRMG 489
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
KI VL+ ++ M RGMD +GVN V+N+D P + +YIHR GRT RAG+ G +TL
Sbjct: 490 KIWVLICTELMARGMDFKGVNFVINFDFPHTLASYIHRIGRTGRAGRPGVAYTL 543
Score = 113 (44.8 bits), Expect = 7.6e-25, Sum P(3) = 7.6e-25
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 22 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
L ER++ +PTGSGKT S+++PI+Q L R++++ PTR+LA Q+
Sbjct: 234 LKEREVVAIAPTGSGKTASFSIPILQALYEPKKEGFRSVIIAPTRELAQQI 284
Score = 65 (27.9 bits), Expect = 7.6e-25, Sum P(3) = 7.6e-25
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 129 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
DIL+ TP RL+ I +L + YLV DE D+L + +Q + V+
Sbjct: 320 DILITTPLRLVYLIKENL-LSLNKVEYLVFDEADKLFDKNFQEQVDIVV 367
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 194 (73.4 bits), Expect = 8.4e-25, Sum P(3) = 8.4e-25
Identities = 60/219 (27%), Positives = 108/219 (49%)
Query: 216 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 275
D P ++ SAT +A+ L+ PL + G R + +E + + ++ +
Sbjct: 685 DSIRPDRQTIMFSATFPPKVENVAKKILNKPLEIIAGG-RSIVSSDIEQFVEVRPTETRF 743
Query: 276 LYLVALLQSLGEEK--CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 333
L+ LL S+ K ++FT+ E+T L L++ + + G + Q+ R +T+
Sbjct: 744 RRLIELL-SIWYHKGQILIFTNRQETTDNLYRQLSNS---QYQCLSLHGSKDQTDRDETI 799
Query: 334 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393
F+ +L+++ +RG+D++ +N VVN+D P +++ Y+HR GRT RAG G +T
Sbjct: 800 SDFKNKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTF 859
Query: 394 LHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+ DE +RF + KA S +P L L Y+
Sbjct: 860 ITPDE-ERFSSSIIKALEQSGS--KVPDEL-RKLNDTYE 894
Score = 116 (45.9 bits), Expect = 8.4e-25, Sum P(3) = 8.4e-25
Identities = 34/100 (34%), Positives = 57/100 (57%)
Query: 12 AVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRC----LRALVVLPTR 66
++ +TI P + RDL + TGSGKTL++ LP+ + + + + AL++ PTR
Sbjct: 534 SIQAQTI-PAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQPKSAPGEGMIALIMSPTR 592
Query: 67 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 106
+LALQ+ + +GL G +SI+++I+EL KR
Sbjct: 593 ELALQIHVECKKFSKVLGLRTACVYGGASISEQIAEL-KR 631
Score = 100 (40.3 bits), Expect = 8.4e-25, Sum P(3) = 8.4e-25
Identities = 28/87 (32%), Positives = 43/87 (49%)
Query: 121 LQELQSAVDILVATPGRLMDHINAT-RGFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
+ EL+ DI+V TPGR++D + A R T L + +LV+DE DR+ + + ++
Sbjct: 626 IAELKRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVD 685
Query: 179 LTRSDNENRFSDASTFLPSAFGSLKTI 205
R D + A TF P K I
Sbjct: 686 SIRPDRQTIMFSA-TFPPKVENVAKKI 711
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 209 (78.6 bits), Expect = 8.5e-25, Sum P(2) = 8.5e-25
Identities = 59/211 (27%), Positives = 100/211 (47%)
Query: 210 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 269
+ R K P R ++ SAT +++ +L LH P + R R+
Sbjct: 181 IRRILKLLPESRQ-NLLFSATFSKEIKELTDKLLHSPALIEVAR-RNTAAARITHVVHPV 238
Query: 270 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 329
+ + K L ++ S + +VFT + +RL L G + G + Q+ R
Sbjct: 239 DRQRKRELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDG---LSSAAIHGNKSQAAR 295
Query: 330 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 389
+ L F++GKI+VLV++D RG+D++ + +V+N++ P K Y+HR GRT RA G
Sbjct: 296 MRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGV 355
Query: 390 CFTLLHKDEVKRFKKLLQKADNDSCPIHSIP 420
+L+ DEV+ + + +K P IP
Sbjct: 356 AISLVSGDEVRLLRDI-EKLLQSKMPQEVIP 385
Score = 141 (54.7 bits), Expect = 8.5e-25, Sum P(2) = 8.5e-25
Identities = 53/183 (28%), Positives = 84/183 (45%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
V ++ I L RD+ + + TG+GKT + LP++Q R V P L
Sbjct: 36 VQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ----------RLFVSRPP--LQRSA 83
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
K V A+ + + V + A +K + G+ P+ + L+ VDILV
Sbjct: 84 KPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQ--INHLRRGVDILV 141
Query: 133 ATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
ATPGRL+D +N +G L + + V+DE DR+L + + +L+L +N A
Sbjct: 142 ATPGRLLDLVN--QGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLLFSA 199
Query: 192 STF 194
TF
Sbjct: 200 -TF 201
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 209 (78.6 bits), Expect = 8.5e-25, Sum P(2) = 8.5e-25
Identities = 59/211 (27%), Positives = 100/211 (47%)
Query: 210 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 269
+ R K P R ++ SAT +++ +L LH P + R R+
Sbjct: 181 IRRILKLLPESRQ-NLLFSATFSKEIKELTDKLLHSPALIEVAR-RNTAAARITHVVHPV 238
Query: 270 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 329
+ + K L ++ S + +VFT + +RL L G + G + Q+ R
Sbjct: 239 DRQRKRELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDG---LSSAAIHGNKSQAAR 295
Query: 330 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 389
+ L F++GKI+VLV++D RG+D++ + +V+N++ P K Y+HR GRT RA G
Sbjct: 296 MRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGV 355
Query: 390 CFTLLHKDEVKRFKKLLQKADNDSCPIHSIP 420
+L+ DEV+ + + +K P IP
Sbjct: 356 AISLVSGDEVRLLRDI-EKLLQSKMPQEVIP 385
Score = 141 (54.7 bits), Expect = 8.5e-25, Sum P(2) = 8.5e-25
Identities = 53/183 (28%), Positives = 84/183 (45%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
V ++ I L RD+ + + TG+GKT + LP++Q R V P L
Sbjct: 36 VQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ----------RLFVSRPP--LQRSA 83
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 132
K V A+ + + V + A +K + G+ P+ + L+ VDILV
Sbjct: 84 KPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQ--INHLRRGVDILV 141
Query: 133 ATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 191
ATPGRL+D +N +G L + + V+DE DR+L + + +L+L +N A
Sbjct: 142 ATPGRLLDLVN--QGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLLFSA 199
Query: 192 STF 194
TF
Sbjct: 200 -TF 201
>ASPGD|ASPL0000044206 [details] [associations]
symbol:AN1949 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
Length = 609
Score = 221 (82.9 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 63/188 (33%), Positives = 95/188 (50%)
Query: 225 MVLSATLTQDPNKLAQLDLHH-PLFLTTGETR-YKLPERLESYKLICESKLKPLYLVALL 282
M+ SAT T LA++ L PL++ + + E LE +ICE+ + L L + L
Sbjct: 311 MLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLFSFL 370
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+ ++K IVF SS LLN+ + + + + G Q+Q R+ T F K
Sbjct: 371 KRNLKKKIIVFFSSCNCVKYHAELLNY---IDLPVLDLHGKQKQQKRTNTFFEFCNAKQG 427
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR-AGQLGRCFTLLHKDEVKR 401
VL+ +D RG+D+ V+ ++ +D P + YIHR GRTAR A GR L EV
Sbjct: 428 VLICTDVAARGLDIPAVDWIIQFDPPDDTRDYIHRVGRTARGANGRGRSLMFLQPSEVG- 486
Query: 402 FKKLLQKA 409
F K L++A
Sbjct: 487 FLKYLKEA 494
Score = 133 (51.9 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 41/129 (31%), Positives = 64/129 (49%)
Query: 2 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA- 59
GI + F + Q TI P L RD+ + TGSGKTL++ +P ++ LS +
Sbjct: 142 GIKEMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLSALRFKPRNGT 201
Query: 60 --LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 117
+VV PTR+LALQ+ V + A + G+ +G ++ E +L K L + P
Sbjct: 202 GVIVVSPTRELALQIFGVARELLTAHSQTYGIVIGGANRRAEAEKLTKGVNL---LIATP 258
Query: 118 EDVLQELQS 126
+L LQ+
Sbjct: 259 GRLLDHLQN 267
Score = 131 (51.2 bits), Expect = 2.1e-24, Sum P(2) = 2.1e-24
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 122 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 181
++L V++L+ATPGRL+DH+ T GF ++L LV+DE DR+L ++ + ++++
Sbjct: 245 EKLTKGVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKIL- 303
Query: 182 SDNENR 187
NE+R
Sbjct: 304 -PNEDR 308
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 190 (71.9 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 52/203 (25%), Positives = 103/203 (50%)
Query: 210 VERGFKDKPY------PRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
+ RGFKD+ Y P+ V++VL SAT+ + + + +P+ + + L
Sbjct: 184 LSRGFKDQIYEVFRSMPQDVQVVLLSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIR 243
Query: 263 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 322
+ Y + + + K L L + + ++F ++ ++ TL E + + G
Sbjct: 244 QFYINVQKDEWKFDCLCDLYNVVNVTQAVIFCNT---RRKVDTLTEKMTENQFTVSCLHG 300
Query: 323 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 382
Q+ R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P+ + YIHR GR+
Sbjct: 301 DMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSG 360
Query: 383 RAGQLGRCFTLLHKDEVKRFKKL 405
R G+ G + +++ ++ K++
Sbjct: 361 RFGRKGVAINFVTENDARQLKEI 383
Score = 124 (48.7 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 31/102 (30%), Positives = 62/102 (60%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ + I P +D+ + +G+GKT ++++ I+Q + + ++ALV+ PTR+LA Q
Sbjct: 54 AIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDPH-VQALVMAPTRELAQQ 112
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 113
++ V +A+ + +++ +G +S+ D+ +R KLEAGI
Sbjct: 113 IQKVMSALGEYLNVNILPCIGGTSVRDD-----QR-KLEAGI 148
Score = 72 (30.4 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
D ++L++ + ++V TPGR+ D IN + V+DE D +L ++
Sbjct: 139 DDQRKLEAGIHVVVGTPGRVGDMINRN-ALDTSRIKMFVLDEADEMLSRGFK 189
>UNIPROTKB|E9PIF2 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HGNC:HGNC:2735 ChiTaRS:DDX10 EMBL:AP002453
EMBL:AP003027 EMBL:AP003387 IPI:IPI00982941
ProteinModelPortal:E9PIF2 SMR:E9PIF2 Ensembl:ENST00000526794
UCSC:uc001pkl.1 ArrayExpress:E9PIF2 Bgee:E9PIF2 Uniprot:E9PIF2
Length = 835
Score = 233 (87.1 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 70/207 (33%), Positives = 102/207 (49%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 283
++ SAT T+ LA+L L +P ++ E +Y P LE ++CE + K L + L+
Sbjct: 250 LLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLR 309
Query: 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKI 341
S ++K IVF SS + L + F LR + I G Q+Q R + F +
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRV---FCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRA 366
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
VL ++D RG+D VN V+ +D P TYIHRAGRTAR + G +L E
Sbjct: 367 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAM 426
Query: 402 FKKLLQKADNDSCPIHSI---PSSLIE 425
++LLQK P+ I P LI+
Sbjct: 427 VQQLLQK----KVPVKEIKINPEKLID 449
Score = 122 (48.0 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 35/119 (29%), Positives = 60/119 (50%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLA 69
+ ++TIG L +D+ + TGSGKTL++ +P+++ L + L L++ PTR+LA
Sbjct: 95 IQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA 154
Query: 70 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 128
Q +V + S GL +G + E +E I + +C P +LQ + V
Sbjct: 155 YQTFEVLRKVGKNHDFSAGLIIGGKDLKHE-AERINN--INILVC-TPGRLLQHMDETV 209
Score = 106 (42.4 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 29/92 (31%), Positives = 46/92 (50%)
Query: 105 KRPKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 162
K AG+ +D+ E + + ++ILV TPGRL+ H++ T F L LV+DE D
Sbjct: 166 KNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD 225
Query: 163 RLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 193
R+L + + V++ L + FS T
Sbjct: 226 RILDMGFADTMNAVIENLPKKRQTLLFSATQT 257
>UNIPROTKB|Q13206 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CH471065
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 CTD:1662 HOVERGEN:HBG102756 OrthoDB:EOG4BK536
EMBL:U28042 EMBL:AB040537 EMBL:AK315216 EMBL:BC091521 EMBL:BC093654
EMBL:BC093656 IPI:IPI00297900 RefSeq:NP_004389.2 UniGene:Hs.591931
PDB:2PL3 PDBsum:2PL3 ProteinModelPortal:Q13206 SMR:Q13206
IntAct:Q13206 STRING:Q13206 PhosphoSite:Q13206 DMDM:76803554
SWISS-2DPAGE:Q13206 PaxDb:Q13206 PeptideAtlas:Q13206 PRIDE:Q13206
Ensembl:ENST00000322536 GeneID:1662 KEGG:hsa:1662 UCSC:uc001pkm.3
GeneCards:GC11P108569 HGNC:HGNC:2735 HPA:HPA004691 MIM:601235
neXtProt:NX_Q13206 PharmGKB:PA27200 InParanoid:Q13206 OMA:ADKVIEP
ChiTaRS:DDX10 EvolutionaryTrace:Q13206 GenomeRNAi:1662 NextBio:6838
ArrayExpress:Q13206 Bgee:Q13206 CleanEx:HS_DDX10
Genevestigator:Q13206 GermOnline:ENSG00000178105 Uniprot:Q13206
Length = 875
Score = 233 (87.1 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 70/207 (33%), Positives = 102/207 (49%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 283
++ SAT T+ LA+L L +P ++ E +Y P LE ++CE + K L + L+
Sbjct: 250 LLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLR 309
Query: 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKI 341
S ++K IVF SS + L + F LR + I G Q+Q R + F +
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRV---FCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRA 366
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
VL ++D RG+D VN V+ +D P TYIHRAGRTAR + G +L E
Sbjct: 367 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAM 426
Query: 402 FKKLLQKADNDSCPIHSI---PSSLIE 425
++LLQK P+ I P LI+
Sbjct: 427 VQQLLQK----KVPVKEIKINPEKLID 449
Score = 122 (48.0 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 35/119 (29%), Positives = 60/119 (50%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLA 69
+ ++TIG L +D+ + TGSGKTL++ +P+++ L + L L++ PTR+LA
Sbjct: 95 IQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA 154
Query: 70 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 128
Q +V + S GL +G + E +E I + +C P +LQ + V
Sbjct: 155 YQTFEVLRKVGKNHDFSAGLIIGGKDLKHE-AERINN--INILVC-TPGRLLQHMDETV 209
Score = 106 (42.4 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 29/92 (31%), Positives = 46/92 (50%)
Query: 105 KRPKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 162
K AG+ +D+ E + + ++ILV TPGRL+ H++ T F L LV+DE D
Sbjct: 166 KNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD 225
Query: 163 RLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 193
R+L + + V++ L + FS T
Sbjct: 226 RILDMGFADTMNAVIENLPKKRQTLLFSATQT 257
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 214 (80.4 bits), Expect = 3.1e-24, Sum P(2) = 3.1e-24
Identities = 63/207 (30%), Positives = 103/207 (49%)
Query: 225 MVLSATLTQDPNKLAQLDLHH-PLFLTT-GETRYKLPERLESYKLICESKLKPLYLVALL 282
M+ SAT T LA++ L PLF+ ET + LE ++C+S + L L + L
Sbjct: 225 MLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLLFSFL 284
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+ ++K IVF SS S LLN+ + + + E G Q+Q R+ T F +
Sbjct: 285 KRNQKKKIIVFLSSCNSVKYYAELLNY---IDLPVLELHGKQKQQKRTNTFFEFCNAERG 341
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ-LGRCFTLLHKDEVKR 401
+L+ +D RG+D+ V+ ++ +D P + YIHR GRTAR + G+ L +E+
Sbjct: 342 ILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNELG- 400
Query: 402 FKKLLQKADNDSCPIHSIPSSLIESLR 428
F + L KA + P + I +++
Sbjct: 401 FLRYL-KASKVPLNEYEFPENKIANVQ 426
Score = 134 (52.2 bits), Expect = 3.1e-24, Sum P(2) = 3.1e-24
Identities = 25/68 (36%), Positives = 46/68 (67%)
Query: 122 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 181
++L V++L+ATPGRL+DH+ T+GF ++L L++DE DR+L ++ + ++++
Sbjct: 159 EKLMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKIL- 217
Query: 182 SDNENRFS 189
NE+R S
Sbjct: 218 -PNEDRQS 224
Score = 121 (47.7 bits), Expect = 7.0e-23, Sum P(2) = 7.0e-23
Identities = 35/123 (28%), Positives = 61/123 (49%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA---LVVL 63
F +V TI P L RD+ + TGSGKTL++ +P ++ L + + +V+
Sbjct: 62 FTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLHSLKFKPRNGTGIIVIT 121
Query: 64 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 123
PTR+LALQ+ V + + G+ +G ++ E +L+K + + P +L
Sbjct: 122 PTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMKGVNM---LIATPGRLLDH 178
Query: 124 LQS 126
LQ+
Sbjct: 179 LQN 181
Score = 38 (18.4 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 396 KDEVKRFKKLLQKADNDSCPIHSIPSSLIESL 427
+DE+++ K+L D S + ++ +E L
Sbjct: 207 EDEMRQIIKILPNEDRQSMLFSATQTTKVEDL 238
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 222 (83.2 bits), Expect = 3.5e-24, Sum P(2) = 3.5e-24
Identities = 69/211 (32%), Positives = 108/211 (51%)
Query: 210 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLE 263
+ER F P+ R + SAT+ + ++ L P + T ET + +
Sbjct: 168 IERIFSLTPFTRQT-LFFSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFK 226
Query: 264 SYKLICESKLKPLYLVALLQSLGEEKC---IVFTSSVESTHRLCTLLNHFGELRIKIKEY 320
+ E+ K L AL+ + GE KC I+F + + L +G I +
Sbjct: 227 GSRRDREASEKRAVLRALIDAEGE-KCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPI--H 283
Query: 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 380
L QS R++TL FREGK+++LV+SD RG+DV V++V N+D P + + Y+HR GR
Sbjct: 284 GDLD-QSQRTRTLDGFREGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGR 342
Query: 381 TARAGQLGRCFTL-LHKDE--VKRFKKLLQK 408
T RAG+ G+ TL + +DE + +KL+QK
Sbjct: 343 TGRAGRDGKAITLCIPRDEKALDAIEKLIQK 373
Score = 123 (48.4 bits), Expect = 3.5e-24, Sum P(2) = 3.5e-24
Identities = 38/107 (35%), Positives = 56/107 (52%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RA-VRCLRA 59
G + P+Q I P L RD+ + TG+GKT S+ LP++ L+ RA R R+
Sbjct: 21 GYETPTPIQAGA----IPPALEGRDVLGIAQTGTGKTASFTLPMITLLARGRARARMPRS 76
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 106
LV+ PTR+LA QV + F + L+ L +G S ++ LI R
Sbjct: 77 LVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQ-DALIDR 122
Score = 116 (45.9 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 41/155 (26%), Positives = 66/155 (42%)
Query: 43 LPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 102
L I QT + + ++ L R A + P L+ +A + +
Sbjct: 43 LGIAQTGTGKTASFTLPMITLLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLK- 101
Query: 103 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDET 161
+ + L G+ + +D L + VD+L+ATPGRL+DH RG L + +VVDE
Sbjct: 102 -LTKALLIGGVSFKEQDAL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEA 156
Query: 162 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 196
DR+L + + + LT + F A T P
Sbjct: 157 DRMLDMGFIPDIERIFSLTPFTRQTLFFSA-TMAP 190
Score = 42 (19.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 396 KDEVKRFKKLLQKADNDSCPIH 417
K +V K LQK D+ PIH
Sbjct: 262 KTDVDIVAKSLQKYGYDAAPIH 283
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 183 (69.5 bits), Expect = 3.5e-24, Sum P(3) = 3.5e-24
Identities = 51/171 (29%), Positives = 86/171 (50%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 283
M+ SAT + +L+ L+ P ++ E T E+L Y++ + + K L L+
Sbjct: 181 MLFSATYSDAVKQLSHKMLNQPQWVNVAENTTASTVEQLV-YRV--DKRRKAELLSELVG 237
Query: 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
+ +VF S+ E L L G I + G + Q R++ L F+ GK++V
Sbjct: 238 RNNWRQVLVFASTKECAEHLLQELTLDG---ISAGVFHGDKTQGARNRVLDDFKAGKLRV 294
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
LV++D RG+D++ + V+N + P + Y+HR GRT RAG GR + +
Sbjct: 295 LVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFV 345
Score = 114 (45.2 bits), Expect = 3.5e-24, Sum P(3) = 3.5e-24
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR--CLRALVVLPTRDLAL 70
V Q+ I L +D+ + TG+GKT ++ALP+++ L+ + LRALV+ PTR+LA+
Sbjct: 27 VQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLAAKPADKPLLRALVMTPTRELAI 86
Query: 71 QV 72
QV
Sbjct: 87 QV 88
Score = 90 (36.7 bits), Expect = 3.5e-24, Sum P(3) = 3.5e-24
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 165
++ VDILVATPGRL D I L + LV+DE DR+L
Sbjct: 119 VEQGVDILVATPGRLFDIIGQFN-LDLSSVTTLVIDEADRML 159
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 183 (69.5 bits), Expect = 3.5e-24, Sum P(3) = 3.5e-24
Identities = 51/171 (29%), Positives = 86/171 (50%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 283
M+ SAT + +L+ L+ P ++ E T E+L Y++ + + K L L+
Sbjct: 181 MLFSATYSDAVKQLSHKMLNQPQWVNVAENTTASTVEQLV-YRV--DKRRKAELLSELVG 237
Query: 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
+ +VF S+ E L L G I + G + Q R++ L F+ GK++V
Sbjct: 238 RNNWRQVLVFASTKECAEHLLQELTLDG---ISAGVFHGDKTQGARNRVLDDFKAGKLRV 294
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
LV++D RG+D++ + V+N + P + Y+HR GRT RAG GR + +
Sbjct: 295 LVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFV 345
Score = 114 (45.2 bits), Expect = 3.5e-24, Sum P(3) = 3.5e-24
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR--CLRALVVLPTRDLAL 70
V Q+ I L +D+ + TG+GKT ++ALP+++ L+ + LRALV+ PTR+LA+
Sbjct: 27 VQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLAAKPADKPLLRALVMTPTRELAI 86
Query: 71 QV 72
QV
Sbjct: 87 QV 88
Score = 90 (36.7 bits), Expect = 3.5e-24, Sum P(3) = 3.5e-24
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 165
++ VDILVATPGRL D I L + LV+DE DR+L
Sbjct: 119 VEQGVDILVATPGRLFDIIGQFN-LDLSSVTTLVIDEADRML 159
>UNIPROTKB|Q3SZ54 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 EMBL:BC103130
IPI:IPI00698793 RefSeq:NP_001029400.1 UniGene:Bt.14169
ProteinModelPortal:Q3SZ54 SMR:Q3SZ54 STRING:Q3SZ54 PRIDE:Q3SZ54
Ensembl:ENSBTAT00000000144 GeneID:504958 KEGG:bta:504958 CTD:1973
InParanoid:Q3SZ54 KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1
NextBio:20866906 Uniprot:Q3SZ54
Length = 406
Score = 175 (66.7 bits), Expect = 3.7e-24, Sum P(3) = 3.7e-24
Identities = 56/223 (25%), Positives = 106/223 (47%)
Query: 210 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 247
Query: 263 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 322
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 248 QFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKM-HARDFTVSAMH--G 304
Query: 323 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 382
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 305 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 364
Query: 383 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIE 425
R G+ G ++ +++ KR + ++ N S I +P ++ +
Sbjct: 365 RFGRKGVAINMVTEED-KRTLRDIETFYNTS--IEEMPLNVAD 404
Score = 128 (50.1 bits), Expect = 3.7e-24, Sum P(3) = 3.7e-24
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 112
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 3.7e-24, Sum P(3) = 3.7e-24
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 121 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 180 TRSDNE 185
S+ +
Sbjct: 203 LNSNTQ 208
>UNIPROTKB|F1P895 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 OMA:PILEMED EMBL:AAEX03003619
EMBL:AAEX03003621 EMBL:AAEX03003620 Ensembl:ENSCAFT00000026357
Uniprot:F1P895
Length = 406
Score = 175 (66.7 bits), Expect = 3.7e-24, Sum P(3) = 3.7e-24
Identities = 56/223 (25%), Positives = 106/223 (47%)
Query: 210 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 247
Query: 263 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 322
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 248 QFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKM-HARDFTVSAMH--G 304
Query: 323 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 382
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 305 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 364
Query: 383 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIE 425
R G+ G ++ +++ KR + ++ N S I +P ++ +
Sbjct: 365 RFGRKGVAINMVTEED-KRTLRDIETFYNTS--IEEMPLNVAD 404
Score = 128 (50.1 bits), Expect = 3.7e-24, Sum P(3) = 3.7e-24
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 112
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 3.7e-24, Sum P(3) = 3.7e-24
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 121 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 180 TRSDNE 185
S+ +
Sbjct: 203 LNSNTQ 208
>UNIPROTKB|J9NY67 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
EMBL:AAEX03006506 EMBL:AAEX03006505 RefSeq:NP_001238871.1
ProteinModelPortal:J9NY67 Ensembl:ENSCAFT00000014379
GeneID:100688577 KEGG:cfa:100688577 Uniprot:J9NY67
Length = 406
Score = 175 (66.7 bits), Expect = 3.7e-24, Sum P(3) = 3.7e-24
Identities = 56/223 (25%), Positives = 106/223 (47%)
Query: 210 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 247
Query: 263 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 322
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 248 QFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKM-HARDFTVSAMH--G 304
Query: 323 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 382
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 305 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 364
Query: 383 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIE 425
R G+ G ++ +++ KR + ++ N S I +P ++ +
Sbjct: 365 RFGRKGVAINMVTEED-KRTLRDIETFYNTS--IEEMPLNVAD 404
Score = 128 (50.1 bits), Expect = 3.7e-24, Sum P(3) = 3.7e-24
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 112
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 3.7e-24, Sum P(3) = 3.7e-24
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 121 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 180 TRSDNE 185
S+ +
Sbjct: 203 LNSNTQ 208
>UNIPROTKB|P60842 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0000339 "RNA cap binding" evidence=TAS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=TAS] [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
Reactome:REACT_6900 EMBL:CH471108 GO:GO:0019048
Pathway_Interaction_DB:mtor_4pathway GO:GO:0006413 GO:GO:0016281
GO:GO:0031100 GO:GO:0003729 GO:GO:0019221 GO:GO:0008135
GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 Reactome:REACT_1762 CTD:1973 KO:K03257
OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:D13748 EMBL:BT019880
EMBL:BT019881 EMBL:AK312630 EMBL:AC016876 EMBL:BC006210
EMBL:BC009585 EMBL:BC073752 IPI:IPI00025491 PIR:S33681
RefSeq:NP_001191439.1 RefSeq:NP_001407.1 UniGene:Hs.129673 PDB:2G9N
PDB:2ZU6 PDB:3EIQ PDBsum:2G9N PDBsum:2ZU6 PDBsum:3EIQ
ProteinModelPortal:P60842 SMR:P60842 DIP:DIP-29755N IntAct:P60842
MINT:MINT-5001111 STRING:P60842 PhosphoSite:P60842 DMDM:46397463
PaxDb:P60842 PRIDE:P60842 DNASU:1973 Ensembl:ENST00000293831
Ensembl:ENST00000577269 GeneID:1973 KEGG:hsa:1973 UCSC:uc002gho.2
GeneCards:GC17P007476 HGNC:HGNC:3282 HPA:CAB011689 MIM:602641
neXtProt:NX_P60842 PharmGKB:PA27710 PhylomeDB:P60842 ChiTaRS:EIF4A1
EvolutionaryTrace:P60842 GenomeRNAi:1973 NextBio:7987
ArrayExpress:P60842 Bgee:P60842 CleanEx:HS_EIF4A1
Genevestigator:P60842 GermOnline:ENSG00000161960 GO:GO:0000339
Uniprot:P60842
Length = 406
Score = 175 (66.7 bits), Expect = 3.7e-24, Sum P(3) = 3.7e-24
Identities = 56/223 (25%), Positives = 106/223 (47%)
Query: 210 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 247
Query: 263 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 322
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 248 QFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKM-HARDFTVSAMH--G 304
Query: 323 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 382
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 305 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 364
Query: 383 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIE 425
R G+ G ++ +++ KR + ++ N S I +P ++ +
Sbjct: 365 RFGRKGVAINMVTEED-KRTLRDIETFYNTS--IEEMPLNVAD 404
Score = 128 (50.1 bits), Expect = 3.7e-24, Sum P(3) = 3.7e-24
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 112
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 3.7e-24, Sum P(3) = 3.7e-24
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 121 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 180 TRSDNE 185
S+ +
Sbjct: 203 LNSNTQ 208
>UNIPROTKB|A6M928 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:CU914279 EMBL:DQ351283 RefSeq:NP_001093666.1
UniGene:Ssc.22034 ProteinModelPortal:A6M928 SMR:A6M928 PRIDE:A6M928
Ensembl:ENSSSCT00000019541 GeneID:100101929 KEGG:ssc:100101929
Uniprot:A6M928
Length = 406
Score = 175 (66.7 bits), Expect = 3.7e-24, Sum P(3) = 3.7e-24
Identities = 56/223 (25%), Positives = 106/223 (47%)
Query: 210 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 247
Query: 263 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 322
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 248 QFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKM-HARDFTVSAMH--G 304
Query: 323 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 382
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 305 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 364
Query: 383 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIE 425
R G+ G ++ +++ KR + ++ N S I +P ++ +
Sbjct: 365 RFGRKGVAINMVTEED-KRTLRDIETFYNTS--IEEMPLNVAD 404
Score = 128 (50.1 bits), Expect = 3.7e-24, Sum P(3) = 3.7e-24
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 112
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 3.7e-24, Sum P(3) = 3.7e-24
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 121 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 180 TRSDNE 185
S+ +
Sbjct: 203 LNSNTQ 208
>MGI|MGI:95303 [details] [associations]
symbol:Eif4a1 "eukaryotic translation initiation factor 4A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95303 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 CTD:1973
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:X03039 EMBL:X03040
EMBL:L36611 EMBL:M22873 EMBL:L36608 EMBL:L36609 EMBL:L36610
EMBL:AB011595 EMBL:AK077429 EMBL:BC049915 IPI:IPI00118676
PIR:JS0039 RefSeq:NP_659207.1 UniGene:Mm.279821 UniGene:Mm.371557
UniGene:Mm.473799 ProteinModelPortal:P60843 SMR:P60843
MINT:MINT-202155 STRING:P60843 PhosphoSite:P60843
REPRODUCTION-2DPAGE:P60843 PaxDb:P60843 PRIDE:P60843
Ensembl:ENSMUST00000163666 GeneID:13681 KEGG:mmu:13681
InParanoid:P60843 NextBio:284438 Bgee:P60843 CleanEx:MM_EIF4A1
Genevestigator:P60843 GermOnline:ENSMUSG00000064241 Uniprot:P60843
Length = 406
Score = 175 (66.7 bits), Expect = 3.7e-24, Sum P(3) = 3.7e-24
Identities = 56/223 (25%), Positives = 106/223 (47%)
Query: 210 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 247
Query: 263 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 322
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 248 QFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKM-HARDFTVSAMH--G 304
Query: 323 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 382
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 305 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 364
Query: 383 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIE 425
R G+ G ++ +++ KR + ++ N S I +P ++ +
Sbjct: 365 RFGRKGVAINMVTEED-KRTLRDIETFYNTS--IEEMPLNVAD 404
Score = 128 (50.1 bits), Expect = 3.7e-24, Sum P(3) = 3.7e-24
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 112
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 3.7e-24, Sum P(3) = 3.7e-24
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 121 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 180 TRSDNE 185
S+ +
Sbjct: 203 LNSNTQ 208
>UNIPROTKB|Q6P3V8 [details] [associations]
symbol:Eif4a1 "Protein Eif4a1" species:10116 "Rattus
norvegicus" [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:735141
GO:GO:0005524 GO:GO:0003743 EMBL:CH473948 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:BC063812 IPI:IPI00369618 RefSeq:NP_955404.1
UniGene:Rn.91523 SMR:Q6P3V8 STRING:Q6P3V8
Ensembl:ENSRNOT00000049048 GeneID:287436 KEGG:rno:287436
InParanoid:Q6P3V8 NextBio:626135 Genevestigator:Q6P3V8
Uniprot:Q6P3V8
Length = 406
Score = 175 (66.7 bits), Expect = 3.7e-24, Sum P(3) = 3.7e-24
Identities = 56/223 (25%), Positives = 106/223 (47%)
Query: 210 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 247
Query: 263 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 322
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 248 QFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKM-HARDFTVSAMH--G 304
Query: 323 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 382
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 305 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 364
Query: 383 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIE 425
R G+ G ++ +++ KR + ++ N S I +P ++ +
Sbjct: 365 RFGRKGVAINMVTEED-KRTLRDIETFYNTS--IEEMPLNVAD 404
Score = 128 (50.1 bits), Expect = 3.7e-24, Sum P(3) = 3.7e-24
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 112
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 3.7e-24, Sum P(3) = 3.7e-24
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 121 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 180 TRSDNE 185
S+ +
Sbjct: 203 LNSNTQ 208
>ASPGD|ASPL0000054300 [details] [associations]
symbol:AN0583 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 RefSeq:XP_658187.1 ProteinModelPortal:Q5BFU7
STRING:Q5BFU7 EnsemblFungi:CADANIAT00002094 GeneID:2876361
KEGG:ani:AN0583.2 HOGENOM:HOG000246455 OMA:HLKVEMN
OrthoDB:EOG4JWZP1 Uniprot:Q5BFU7
Length = 936
Score = 233 (87.1 bits), Expect = 4.0e-24, Sum P(2) = 4.0e-24
Identities = 80/275 (29%), Positives = 123/275 (44%)
Query: 129 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF 188
DI++ATPGR + H+ L + Y+V DE DRL + A L +L S +
Sbjct: 213 DIVIATPGRFL-HLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPSTRQTLL 271
Query: 189 SDASTFLPSAFGSLKTIRRCG------VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD 242
A+ LP SL R G V + K P L S + L +
Sbjct: 272 FSAT--LPK---SLVEFARAGLQDPTLVRLDTESKISPDLQNAFFSVKSAEKEGALLYI- 325
Query: 243 LHHPLFLTTGETR--YKLPER-LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 299
L+ + + TG T +L E+ E K + + V + +S + IVF ++
Sbjct: 326 LNEVIKMPTGPTEASLRLKEKGPEDSKNKKRKRAEMERAVNMKESPTKHSTIVFAATKHH 385
Query: 300 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
L +LL G + G Q+ R ++ FR G +LV +D RG+D+ +
Sbjct: 386 VDYLYSLLREAG---FAVSYVYGSLDQTARKIQVQNFRTGISNILVVTDVAARGIDIPIL 442
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
NV+NYD P+ K ++HR GRTARAG+ G ++L+
Sbjct: 443 ANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLV 477
Score = 121 (47.7 bits), Expect = 4.0e-24, Sum P(2) = 4.0e-24
Identities = 28/104 (26%), Positives = 55/104 (52%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPT 65
F V + ++TI + ++D+ + TGSGKT ++ +P+++ L + + + R L++ P+
Sbjct: 111 FSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKFGARGLILSPS 170
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
R+LALQ V + L L VG S+ ++ + P +
Sbjct: 171 RELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFGMMAGNPDI 214
>ZFIN|ZDB-GENE-031113-10 [details] [associations]
symbol:ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
21" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 InterPro:IPR017956 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00384 SMART:SM00490
ZFIN:ZDB-GENE-031113-10 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 CTD:9188 HOVERGEN:HBG051331
OrthoDB:EOG46143T EMBL:BC160629 IPI:IPI00611974
RefSeq:NP_001120807.1 UniGene:Dr.104447 ProteinModelPortal:B1H1J4
STRING:B1H1J4 GeneID:799650 KEGG:dre:799650 NextBio:20933916
Uniprot:B1H1J4
Length = 759
Score = 170 (64.9 bits), Expect = 4.1e-24, Sum P(3) = 4.1e-24
Identities = 34/84 (40%), Positives = 50/84 (59%)
Query: 326 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 385
Q R TLK FR G +VLV+++ RG+D+ V+ V+ P +++YIHR+GRT RAG
Sbjct: 453 QKQREVTLKGFRNGSFEVLVATNVAARGLDIPEVDLVIQSSPPNDVESYIHRSGRTGRAG 512
Query: 386 QLGRCFTLLHKDEVKRFKKLLQKA 409
+ G C + E + K + QKA
Sbjct: 513 RTGICICFYQRKEESQLKFVEQKA 536
Score = 120 (47.3 bits), Expect = 4.1e-24, Sum P(3) = 4.1e-24
Identities = 39/107 (36%), Positives = 57/107 (53%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-----RAVRC 56
G+S LF +QV + + G +DL + TG+GKT S+A+P+V+ L + R R
Sbjct: 185 GVSYLFDIQVKTFN-AVYDG---KDLIGQARTGTGKTFSFAVPLVEKLQSGDQERRRGRP 240
Query: 57 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
+ LV+ PTR+LA+QV F I LSV G SS +I +
Sbjct: 241 PKVLVLAPTRELAIQVTKDFKDITRK--LSVTCFYGGSSYNPQIDAI 285
Score = 109 (43.4 bits), Expect = 4.1e-24, Sum P(3) = 4.1e-24
Identities = 23/77 (29%), Positives = 44/77 (57%)
Query: 112 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 171
G Y+P+ + ++S +D+LV TPGR+ DH+ + L L ++V+DE D++L +
Sbjct: 275 GSSYNPQ--IDAIRSGIDVLVGTPGRIRDHLQNNK-LDLSQLQHVVLDEVDQMLDMGFAE 331
Query: 172 WLPTVLQLT-RSDNENR 187
+ +L + + D E +
Sbjct: 332 QVEEILSASYKKDAEQK 348
>SGD|S000005321 [details] [associations]
symbol:DBP6 "Essential protein involved in ribosome
biogenesis" species:4932 "Saccharomyces cerevisiae" [GO:0000463
"maturation of LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0030687
"preribosome, large subunit precursor" evidence=IDA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0000466
"maturation of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000005321
GO:GO:0005524 GO:GO:0005730 EMBL:BK006947 GO:GO:0003723
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000463 GO:GO:0008026 eggNOG:COG0513 GO:GO:0000466 KO:K14807
HOGENOM:HOG000203294 OrthoDB:EOG490BK3 EMBL:Z71653 PIR:S63369
RefSeq:NP_014436.1 ProteinModelPortal:P53734 SMR:P53734
IntAct:P53734 MINT:MINT-2731978 STRING:P53734 PaxDb:P53734
PeptideAtlas:P53734 PRIDE:P53734 EnsemblFungi:YNR038W GeneID:855774
KEGG:sce:YNR038W CYGD:YNR038w GeneTree:ENSGT00550000075141
OMA:SSREYVH NextBio:980232 Genevestigator:P53734 GermOnline:YNR038W
Uniprot:P53734
Length = 629
Score = 298 (110.0 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 97/345 (28%), Positives = 168/345 (48%)
Query: 101 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160
S ++ KLE + D L L+ DIL+ TPGRL+DH+N + L++L +L++DE
Sbjct: 287 SLIVSIAKLENSL-KDEHKKLSNLEP--DILITTPGRLVDHLNM-KSINLKNLKFLIIDE 342
Query: 161 TDRLLREAYQAWLPTVLQLTRSDNENRF-SDASTFLPSAFGSLKTIRRCGVERGFKDKPY 219
DRLL +++Q W P ++ ++D + + + SA + T + G+ +K K +
Sbjct: 343 ADRLLNQSFQGWCPKLMSHLKTDKLDTLPGNVIKMIFSATLTTNTEKLNGLNL-YKPKLF 401
Query: 220 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLYL 278
+K + L Q PNKL + +++ P T ++ YK P L Y IC+ P+
Sbjct: 402 ---LKQ--TDKLYQLPNKLNEFNINIP----TAKSVYK-PLIL-LYS-ICQFMAHSPIAA 449
Query: 279 VALLQSLGEEKCIVFTSSVE---STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 335
L+ E I + ++ + ++L + L + I + ++ K +
Sbjct: 450 KILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAENKKIVAN 509
Query: 336 F----REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 391
F I +L+++D M+RG+D+ + V+NYD P + Y+HR GRTARA +LG +
Sbjct: 510 FSHHSESAGITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANELGSAY 569
Query: 392 TLL-HKDEVKRFKKLLQKADNDSCPIH--SIPSSLIESLRPVYKS 433
LL + E F L + D D + + +L+ES +Y S
Sbjct: 570 NLLVGRGERTFFDDLNKDLDRDGKSVQPLELDFTLLESDSELYTS 614
Score = 157 (60.3 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 46/179 (25%), Positives = 88/179 (49%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85
D+ +N+ TGSGKTL+Y++PIVQTL R + LR ++++PT+ L QV + L
Sbjct: 229 DILVNAATGSGKTLAYSIPIVQTLFKRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSL 288
Query: 86 SVGLAVGQSSIADEISELIK-RPKL---EAGICYDPEDVLQ-ELQSAVDILVATPGRLMD 140
V +A ++S+ DE +L P + G D ++ L++ +++ RL++
Sbjct: 289 IVSIAKLENSLKDEHKKLSNLEPDILITTPGRLVDHLNMKSINLKNLKFLIIDEADRLLN 348
Query: 141 HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 199
+ +G+ + + +L D+ D L + + T + N + + + + P F
Sbjct: 349 Q--SFQGWCPKLMSHLKTDKLDTLPGNV----IKMIFSATLTTNTEKLNGLNLYKPKLF 401
>TAIR|locus:2086775 [details] [associations]
symbol:AT3G16840 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AB028608 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14805 HOGENOM:HOG000290702 EMBL:AK318706
EMBL:AY045669 EMBL:AY054475 EMBL:AJ010465 IPI:IPI00535611
IPI:IPI01019866 PIR:T51744 RefSeq:NP_188307.3 UniGene:At.5723
ProteinModelPortal:Q93Y39 SMR:Q93Y39 PaxDb:Q93Y39 PRIDE:Q93Y39
GeneID:820937 KEGG:ath:AT3G16840 GeneFarm:929 TAIR:At3g16840
InParanoid:Q93Y39 OMA:DAYLYYI Genevestigator:Q93Y39
GermOnline:AT3G16840 Uniprot:Q93Y39
Length = 826
Score = 300 (110.7 bits), Expect = 4.4e-24, P = 4.4e-24
Identities = 114/426 (26%), Positives = 199/426 (46%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA---IAP 81
+D+ + TGSGKTL++ LPI+Q L + + + L L + D + I P
Sbjct: 229 KDVIGAAETGSGKTLAFGLPILQRLLDEREK-VGKLYALKGEEAQKYAADGYLRALIITP 287
Query: 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 141
L++ + + A +S +K + G+ + ++ + L+ +I+VATPGRL +
Sbjct: 288 TRELALQVTEHLENAAKNLS--VKVVPIVGGMFSEKQE--RRLKEKPEIVVATPGRLWEL 343
Query: 142 INATRGFTLE-H-LCYLVVDETDRLLREAYQAWLPTVLQL---TRSDNENRF-----SDA 191
++A +E H L + V+DE DR++ + L ++L L T NE + +D
Sbjct: 344 MSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKPNEGKTQTVKSNDT 403
Query: 192 ---------STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD 242
TF+ SA +L + R ++RG K V S + + + D
Sbjct: 404 VLNVPKKKRQTFVFSATIALSSDFRKKLKRG-SSKSKQSSSGEVNSIEVLSE--RAGMRD 460
Query: 243 LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 302
+ LTT T P+ ES+ + CE K K YL +L G+ + IVF +SV
Sbjct: 461 NVAIIDLTT--TSILAPKIEESF-IKCEEKEKDAYLYYILSVHGQGRTIVFCTSVTDLRH 517
Query: 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362
+ LL G + + +Q R K++ FR + +L+++D + RG+D++ V +
Sbjct: 518 ISGLLKILG---LDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTI 574
Query: 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSS 422
++Y P + Y+HR GRTARA G L+ +E +F L + +S I + +S
Sbjct: 575 IHYKLPHSAEVYVHRCGRTARAFADGCSIALIEPNETSKFYTLCKSFSMESVKIFPLDNS 634
Query: 423 LIESLR 428
+ ++R
Sbjct: 635 YMPAVR 640
>UNIPROTKB|Q3SZ40 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 HSSP:P60842 EMBL:BC103169
IPI:IPI00695179 RefSeq:NP_001029501.1 UniGene:Bt.48952
ProteinModelPortal:Q3SZ40 STRING:Q3SZ40 PRIDE:Q3SZ40
Ensembl:ENSBTAT00000014014 GeneID:508728 KEGG:bta:508728 CTD:54606
HOVERGEN:HBG051334 InParanoid:Q3SZ40 OrthoDB:EOG47H5PT
NextBio:20868656 Uniprot:Q3SZ40
Length = 546
Score = 147 (56.8 bits), Expect = 4.7e-24, Sum P(3) = 4.7e-24
Identities = 42/142 (29%), Positives = 77/142 (54%)
Query: 220 PRLVK-MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLY 277
PR+ + ++SAT +D L +L LH+P+ L E++ P++L+ ++++CE++ K L
Sbjct: 188 PRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLL 247
Query: 278 LVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 336
L ALL+ SL K ++F +++E ++RL L F I +G R + F
Sbjct: 248 LYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFS---IPACVLNGELPLRSRCHIISQF 304
Query: 337 REGKIQVLVSSDAMTRGMDVEG 358
+G ++++DA G V+G
Sbjct: 305 NQGFYDCVIATDAEVLGPPVKG 326
Score = 140 (54.3 bits), Expect = 4.7e-24, Sum P(3) = 4.7e-24
Identities = 50/170 (29%), Positives = 82/170 (48%)
Query: 15 QETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAV------RCLRALVVLPTRD 67
QE P E +DL + TGSGKT +YA+P++Q L +R + +RALV++PT++
Sbjct: 34 QEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPVVEQAVRALVLVPTKE 93
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q + + +A + +A S+ D S+ VL E
Sbjct: 94 LARQAQSMIQQLAAYCARDIRVA-NVSAAEDSASQ---------------RAVLMEKP-- 135
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
D++V TP R+++H+ + + LVVDE D L ++ L ++L
Sbjct: 136 -DVVVGTPSRILNHLQQDNLKLRDSMELLVVDEADLLFSFGFEEELKSLL 184
Score = 108 (43.1 bits), Expect = 4.7e-24, Sum P(3) = 4.7e-24
Identities = 26/68 (38%), Positives = 36/68 (52%)
Query: 350 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409
+ RG+D V V+N+D P + YIHRAGRTARA G T + E + K+ +
Sbjct: 345 VARGIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSQLGKIEELL 404
Query: 410 DNDS-CPI 416
DS P+
Sbjct: 405 SGDSGAPV 412
>DICTYBASE|DDB_G0269192 [details] [associations]
symbol:tifA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0269192 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K13025 OMA:LALGDFM RefSeq:XP_646270.1 ProteinModelPortal:Q55D61
SMR:Q55D61 PRIDE:Q55D61 EnsemblProtists:DDB0191511 GeneID:8617226
KEGG:ddi:DDB_G0269192 Uniprot:Q55D61
Length = 405
Score = 180 (68.4 bits), Expect = 4.7e-24, Sum P(3) = 4.7e-24
Identities = 50/201 (24%), Positives = 96/201 (47%)
Query: 220 PRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 278
P ++VL SATLTQD + + + P+ + L + + + + K L
Sbjct: 203 PNGTQIVLVSATLTQDVVSMTEKFMTKPVRILLKRDELTLDGIKQFFVSVEKEDWKFGTL 262
Query: 279 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 338
+ SL + ++F ++ + +L + + + G Q R + +K+FR
Sbjct: 263 CDIYDSLTITQAVIFCNTKKKVDQLTEQMR---DANFTVASMHGDMVQKEREEIIKSFRS 319
Query: 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
G+ +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR+ R G+ G + +
Sbjct: 320 GENRVLITTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKNSD 379
Query: 399 VKRFKKLLQ--KADNDSCPIH 417
++ + + Q D P++
Sbjct: 380 IRILRDIEQFYSTQIDEMPVN 400
Score = 121 (47.7 bits), Expect = 4.7e-24, Sum P(3) = 4.7e-24
Identities = 27/92 (29%), Positives = 54/92 (58%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ Q I P + RD + +G+GKT ++++ +Q + VR + L++ PTR+LA Q
Sbjct: 57 AIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQCVEVN-VRSPQVLILSPTRELAQQ 115
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
++ V A++ + + V VG +++D++ +L
Sbjct: 116 IQKVALALSEFMNIQVHACVGGKNLSDDVKKL 147
Score = 82 (33.9 bits), Expect = 4.7e-24, Sum P(3) = 4.7e-24
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 119 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
D +++L++ V I+ TPGR++D I + H+ +++DE D +L +Q
Sbjct: 142 DDVKKLETGVHIVSGTPGRVLDMITR-KSLPTRHIKMMILDEADEMLSLGFQ 192
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 203 (76.5 bits), Expect = 5.1e-24, Sum P(2) = 5.1e-24
Identities = 62/216 (28%), Positives = 95/216 (43%)
Query: 228 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGE 287
SAT ++ LA L+ + + G + IC KP LV LL +
Sbjct: 424 SATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVCLLNEISP 483
Query: 288 --------EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 339
K IVF + + ++ G I G + Q+ R LK FR G
Sbjct: 484 IKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIH---GDKTQNERDSVLKDFRNG 540
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
K +L+++D +RG+DVE + V+NYD P + Y+HR GRT R QLG +T D
Sbjct: 541 KSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNA 600
Query: 400 KRFKKLLQKADNDSCPIHSIPS-SLIESLRPVYKSG 434
K+ ++L+ + PS +L++ R + SG
Sbjct: 601 KQARELISVLEEAG----QTPSQALLDLARSMPSSG 632
Score = 153 (58.9 bits), Expect = 5.1e-24, Sum P(2) = 5.1e-24
Identities = 51/166 (30%), Positives = 83/166 (50%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLALQVKDVFAAI 79
RDL + TGSGKTL+Y LP + + N+ +R ALV+ PTR+LA Q++
Sbjct: 275 RDLVGIAQTGSGKTLAYMLPAIVHIGNQPP-IIRGEGPIALVLAPTRELAQQIQ------ 327
Query: 80 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 139
SV G + I+ + G P+ ++L V++++ATPGRL+
Sbjct: 328 ------SVVRDYGHLCKPE-----IRHTCIFGGSSKVPQ--ARDLDRGVEVIIATPGRLI 374
Query: 140 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
D + R L+ YLV+DE DR+L ++ + +++ R D +
Sbjct: 375 DFLE-NRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 419
>UNIPROTKB|Q86TM3 [details] [associations]
symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
GermOnline:ENSG00000184735 Uniprot:Q86TM3
Length = 631
Score = 189 (71.6 bits), Expect = 5.3e-24, Sum P(3) = 5.3e-24
Identities = 51/201 (25%), Positives = 94/201 (46%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SAT +LA L P+ + G ++ ++ K K +++
Sbjct: 404 VMTSATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVEN 463
Query: 285 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
+ +K I+F S H L + F I + G QS + + ++ F+ G I++
Sbjct: 464 MSPNDKVIMFVSQ---KHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKI 520
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 403
L+++D ++RG+D+ V +V NYD P I Y+HR G R G+ G TL+ + + K
Sbjct: 521 LITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAG 580
Query: 404 KLLQKADNDSCPIHSIPSSLI 424
+L++ D + S+P L+
Sbjct: 581 ELIKILDRAN---QSVPEDLV 598
Score = 112 (44.5 bits), Expect = 5.3e-24, Sum P(3) = 5.3e-24
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
++++ VDI++ATPGRL D + L + YLV+DE D++L ++ + +L
Sbjct: 339 IEDISKGVDIIIATPGRLND-LQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDV 397
Query: 181 RSDNENRFSDAS 192
R D + + A+
Sbjct: 398 RPDRQTVMTSAT 409
Score = 91 (37.1 bits), Expect = 5.3e-24, Sum P(3) = 5.3e-24
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLR- 58
+GI P+Q W I G+ DL + + TG+GKTLSY +P L ++ + R R
Sbjct: 240 VGIVKPTPIQSQAWP-IILQGI---DLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRN 295
Query: 59 ---ALVVLPTRDLALQVK 73
LV+ PTR+LAL V+
Sbjct: 296 GPGMLVLTPTRELALHVE 313
>UNIPROTKB|E2RC35 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000074980
CTD:1662 OMA:ADKVIEP EMBL:AAEX03003508 RefSeq:XP_536583.2
Ensembl:ENSCAFT00000022758 GeneID:479448 KEGG:cfa:479448
Uniprot:E2RC35
Length = 871
Score = 231 (86.4 bits), Expect = 5.5e-24, Sum P(2) = 5.5e-24
Identities = 72/208 (34%), Positives = 103/208 (49%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 283
++ SAT T+ LA+L L +P ++ E +Y P LE ++CE + K L + L+
Sbjct: 250 LLFSATQTKSVKDLARLSLKNPEYIWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLR 309
Query: 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKI 341
S ++K IVF SS + L + F LR I I G Q+Q R + F +
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRV---FCRLRPGISILALHGRQQQMRRMEVYNEFVRKRS 366
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
VL ++D RG+D VN V+ +D P TYIHRAGRTAR + G +L E K
Sbjct: 367 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEKG 426
Query: 402 F-KKLLQKADNDSCPIHSI---PSSLIE 425
++LLQK P+ I P LI+
Sbjct: 427 MVQQLLQK----KVPVKEIKINPEKLID 450
Score = 121 (47.7 bits), Expect = 5.5e-24, Sum P(2) = 5.5e-24
Identities = 34/119 (28%), Positives = 60/119 (50%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLA 69
+ ++TIG L +D+ + TGSGKTL++ +P+++ L + L L++ PTR+LA
Sbjct: 95 IQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA 154
Query: 70 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 128
Q +V + S GL +G + E +E I + +C P +LQ + +
Sbjct: 155 YQTFEVLRKVGKNHDFSAGLIIGGKDLKHE-AERINN--INILVC-TPGRLLQHMDETI 209
Score = 104 (41.7 bits), Expect = 3.3e-22, Sum P(2) = 3.3e-22
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 105 KRPKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 162
K AG+ +D+ E + + ++ILV TPGRL+ H++ T F +L LV+DE D
Sbjct: 166 KNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEAD 225
Query: 163 RLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 193
R+L + + +++ L + FS T
Sbjct: 226 RILDMGFADTMNAIIENLPKKRQTLLFSATQT 257
>ZFIN|ZDB-GENE-031030-2 [details] [associations]
symbol:eif4a1a "eukaryotic translation initiation
factor 4A, isoform 1A" species:7955 "Danio rerio" [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-2 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 HSSP:P10081 GeneTree:ENSGT00530000062880
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:CR848032 EMBL:BC048899
IPI:IPI00502344 RefSeq:NP_938180.1 UniGene:Dr.75120 SMR:Q802C9
STRING:Q802C9 Ensembl:ENSDART00000058913 GeneID:386634
KEGG:dre:386634 CTD:386634 InParanoid:Q802C9 NextBio:20813962
Uniprot:Q802C9
Length = 406
Score = 182 (69.1 bits), Expect = 5.5e-24, Sum P(3) = 5.5e-24
Identities = 51/203 (25%), Positives = 96/203 (47%)
Query: 210 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
+ RGFKD+ Y K+ +LSAT+ Q+ ++ + P+ + + L
Sbjct: 188 LSRGFKDQIYEIFQKLATDTQVILLSATMPQEVLEVTTKFMRDPVRILVKKEELTLEGIR 247
Query: 263 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 322
+ Y + + + K L L ++L + ++F + + ++ L + G
Sbjct: 248 QFYINVEKEEWKLDTLCDLYETLTITQAVIF---INTRRKVDWLTEKMHARDFTVSALHG 304
Query: 323 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 382
Q R +K FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 305 DMEQKERDVIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 364
Query: 383 RAGQLGRCFTLLHKDEVKRFKKL 405
R G+ G ++ +D+ + + +
Sbjct: 365 RFGRKGVAINMITEDDKRTLRDI 387
Score = 121 (47.7 bits), Expect = 5.5e-24, Sum P(3) = 5.5e-24
Identities = 25/92 (27%), Positives = 55/92 (59%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +A+V+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIDVE-LKATQAMVLAPTRELAQQ 115
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
++ V A+ +G + +G +++ +++ +L
Sbjct: 116 IQKVVLALGDYMGATCHACIGGTNVRNDVQKL 147
Score = 79 (32.9 bits), Expect = 5.5e-24, Sum P(3) = 5.5e-24
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 121 LQELQSAVD-ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
+Q+LQ+ V I+V TPGR+ D +N R + +++ +DE D +L ++ + + Q
Sbjct: 144 VQKLQADVPHIVVGTPGRVFDMLNR-RYLSPKYIKMFALDEADEMLSRGFKDQIYEIFQK 202
Query: 180 TRSDNE 185
+D +
Sbjct: 203 LATDTQ 208
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 214 (80.4 bits), Expect = 6.3e-24, Sum P(2) = 6.3e-24
Identities = 62/215 (28%), Positives = 110/215 (51%)
Query: 210 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL---TTGETRYKLPERLESYK 266
VE + P R+ M+ SATL +D +L++ ++ P + G T K+ L ++
Sbjct: 167 VEAIIDELPTKRMT-MLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTL--FE 223
Query: 267 LICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 326
+ E KL L V +++ + CI+F + E+ + L+ KI + G+ ++
Sbjct: 224 VREEEKLSLLKDVTTIEN--PDSCIIFCRTQENVDHVYRQLDRVNYPCDKI--HGGMVQE 279
Query: 327 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 386
R + FR+GK + LV++D RG+D++ + +V+NYD P ++Y+HR GRT RAG
Sbjct: 280 D-RFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGN 338
Query: 387 LGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 421
G+ T + E RF + ++ + P + PS
Sbjct: 339 SGKAITFITPYE-DRFLEEIEAYIGFAIPKANAPS 372
Score = 130 (50.8 bits), Expect = 6.3e-24, Sum P(2) = 6.3e-24
Identities = 50/184 (27%), Positives = 84/184 (45%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 61
G+ P +V E I L ++DL + S TGSGKT S+ +P+ + + + +ALV
Sbjct: 21 GLGYEHPTEVQ--GEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENKP-QALV 77
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
+ PTR+LA+QVK+ I + G+S A + EL ++ + G P VL
Sbjct: 78 LTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGT---PGRVL 134
Query: 122 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE--TDRLLREAYQAWLPT-VLQ 178
++ L ++D + ++DE T R+ + A LP V +
Sbjct: 135 DHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM-LFSATLPEDVER 193
Query: 179 LTRS 182
L+R+
Sbjct: 194 LSRT 197
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 214 (80.4 bits), Expect = 6.3e-24, Sum P(2) = 6.3e-24
Identities = 62/215 (28%), Positives = 110/215 (51%)
Query: 210 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL---TTGETRYKLPERLESYK 266
VE + P R+ M+ SATL +D +L++ ++ P + G T K+ L ++
Sbjct: 167 VEAIIDELPTKRMT-MLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTL--FE 223
Query: 267 LICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 326
+ E KL L V +++ + CI+F + E+ + L+ KI + G+ ++
Sbjct: 224 VREEEKLSLLKDVTTIEN--PDSCIIFCRTQENVDHVYRQLDRVNYPCDKI--HGGMVQE 279
Query: 327 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 386
R + FR+GK + LV++D RG+D++ + +V+NYD P ++Y+HR GRT RAG
Sbjct: 280 D-RFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGN 338
Query: 387 LGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 421
G+ T + E RF + ++ + P + PS
Sbjct: 339 SGKAITFITPYE-DRFLEEIEAYIGFAIPKANAPS 372
Score = 130 (50.8 bits), Expect = 6.3e-24, Sum P(2) = 6.3e-24
Identities = 50/184 (27%), Positives = 84/184 (45%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV 61
G+ P +V E I L ++DL + S TGSGKT S+ +P+ + + + +ALV
Sbjct: 21 GLGYEHPTEVQ--GEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENKP-QALV 77
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 121
+ PTR+LA+QVK+ I + G+S A + EL ++ + G P VL
Sbjct: 78 LTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGT---PGRVL 134
Query: 122 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE--TDRLLREAYQAWLPT-VLQ 178
++ L ++D + ++DE T R+ + A LP V +
Sbjct: 135 DHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM-LFSATLPEDVER 193
Query: 179 LTRS 182
L+R+
Sbjct: 194 LSRT 197
>POMBASE|SPAC1F5.10 [details] [associations]
symbol:SPAC1F5.10 "ATP-dependent RNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC1F5.10 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 OMA:EDWKFDT
OrthoDB:EOG4HTD1W PIR:T38085 RefSeq:NP_592863.1
ProteinModelPortal:Q10055 SMR:Q10055 PRIDE:Q10055
EnsemblFungi:SPAC1F5.10.1 GeneID:2541602 KEGG:spo:SPAC1F5.10
NextBio:20802696 Uniprot:Q10055
Length = 394
Score = 187 (70.9 bits), Expect = 7.0e-24, Sum P(3) = 7.0e-24
Identities = 57/206 (27%), Positives = 98/206 (47%)
Query: 210 VERGFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
+ +GFK++ Y P +V+SATL QD ++ +P+ + L E L
Sbjct: 176 LNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTL-EGL 234
Query: 263 ESYKLICESK-LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 321
+ Y + E + K L L +L + ++F +S ++ L E +
Sbjct: 235 KQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNS---RRKVDWLTEKMREANFTVTSMH 291
Query: 322 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 381
G Q R ++ FR+G +VL+ +D RG+DV+ V+ V+NYD PA + YIHR GR+
Sbjct: 292 GEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRS 351
Query: 382 ARAGQLGRCFTLLHKDEVKRFKKLLQ 407
R G+ G + ++V+ + + Q
Sbjct: 352 GRFGRKGVAINFVTNEDVRILRDIEQ 377
Score = 126 (49.4 bits), Expect = 7.0e-24, Sum P(3) = 7.0e-24
Identities = 24/79 (30%), Positives = 54/79 (68%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84
RD+ + +G+GKT ++++ I+Q++ + +VR +AL++ PTR+LA+Q+++V A+ +
Sbjct: 59 RDVIAQAQSGTGKTATFSIGILQSI-DLSVRDTQALILSPTRELAVQIQNVVLALGDHMN 117
Query: 85 LSVGLAVGQSSIADEISEL 103
+ +G +S+ ++I +L
Sbjct: 118 VQCHACIGGTSVGNDIKKL 136
Score = 66 (28.3 bits), Expect = 7.0e-24, Sum P(3) = 7.0e-24
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
+++L ++ TPGR+ D I R ++ L++DE D LL + ++
Sbjct: 133 IKKLDYGQHVVSGTPGRVTDMIRR-RNLRTRNVKMLILDEADELLNQGFK 181
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 204 (76.9 bits), Expect = 7.0e-24, Sum P(2) = 7.0e-24
Identities = 57/196 (29%), Positives = 100/196 (51%)
Query: 210 VERGFKDK-----PY-PRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
++ GFK++ Y P+ + +L SAT D K+++ L P + E + K + +
Sbjct: 163 LDMGFKEEIDQITQYLPKTKQTLLFSATFADDIYKMSKNILVEPKMVEIDE-KNKAADDV 221
Query: 263 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 322
E ++ K L+ S ++ +VFT + + L + G +K G
Sbjct: 222 EQLVYGVDADRKRELTSFLIGSRNWKQVLVFTRTKQCADDLAKEMTKDG---VKSLAIHG 278
Query: 323 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 382
+ Q R K L F+EGK++ L+++D RG+D++G+++V+NY+ P + Y+HR GRTA
Sbjct: 279 DKSQGAREKALHEFKEGKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTA 338
Query: 383 RAGQLGRCFTLLHKDE 398
RAG G +L+ E
Sbjct: 339 RAGNSGLAVSLVSPGE 354
Score = 138 (53.6 bits), Expect = 7.0e-24, Sum P(2) = 7.0e-24
Identities = 37/102 (36%), Positives = 57/102 (55%)
Query: 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC---LRALV 61
S + + +++I L + D+ + TG+GKT ++ALPI+Q L + C LRALV
Sbjct: 23 SAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLIS-VQPCKPELRALV 81
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
+ PTR+LA QV F +++G+A G S +ISEL
Sbjct: 82 LTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISEL 123
Score = 110 (43.8 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 33/98 (33%), Positives = 51/98 (52%)
Query: 112 GICY---DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 168
GI Y + + EL+ VDIL+ATPGRL+D + T +L ++ LV DE DR+L
Sbjct: 108 GIAYGGVSTKKQISELKVGVDILIATPGRLLDLLR-TESVSLSNIETLVFDEADRMLDMG 166
Query: 169 YQAWLPTVLQ-LTRSDNENRFSDASTFLPSAFGSLKTI 205
++ + + Q L ++ FS +TF + K I
Sbjct: 167 FKEEIDQITQYLPKTKQTLLFS--ATFADDIYKMSKNI 202
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 204 (76.9 bits), Expect = 7.0e-24, Sum P(2) = 7.0e-24
Identities = 57/196 (29%), Positives = 100/196 (51%)
Query: 210 VERGFKDK-----PY-PRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
++ GFK++ Y P+ + +L SAT D K+++ L P + E + K + +
Sbjct: 163 LDMGFKEEIDQITQYLPKTKQTLLFSATFADDIYKMSKNILVEPKMVEIDE-KNKAADDV 221
Query: 263 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 322
E ++ K L+ S ++ +VFT + + L + G +K G
Sbjct: 222 EQLVYGVDADRKRELTSFLIGSRNWKQVLVFTRTKQCADDLAKEMTKDG---VKSLAIHG 278
Query: 323 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 382
+ Q R K L F+EGK++ L+++D RG+D++G+++V+NY+ P + Y+HR GRTA
Sbjct: 279 DKSQGAREKALHEFKEGKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTA 338
Query: 383 RAGQLGRCFTLLHKDE 398
RAG G +L+ E
Sbjct: 339 RAGNSGLAVSLVSPGE 354
Score = 138 (53.6 bits), Expect = 7.0e-24, Sum P(2) = 7.0e-24
Identities = 37/102 (36%), Positives = 57/102 (55%)
Query: 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC---LRALV 61
S + + +++I L + D+ + TG+GKT ++ALPI+Q L + C LRALV
Sbjct: 23 SAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLIS-VQPCKPELRALV 81
Query: 62 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
+ PTR+LA QV F +++G+A G S +ISEL
Sbjct: 82 LTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISEL 123
Score = 110 (43.8 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 33/98 (33%), Positives = 51/98 (52%)
Query: 112 GICY---DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 168
GI Y + + EL+ VDIL+ATPGRL+D + T +L ++ LV DE DR+L
Sbjct: 108 GIAYGGVSTKKQISELKVGVDILIATPGRLLDLLR-TESVSLSNIETLVFDEADRMLDMG 166
Query: 169 YQAWLPTVLQ-LTRSDNENRFSDASTFLPSAFGSLKTI 205
++ + + Q L ++ FS +TF + K I
Sbjct: 167 FKEEIDQITQYLPKTKQTLLFS--ATFADDIYKMSKNI 202
>WB|WBGene00022378 [details] [associations]
symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
Uniprot:Q688Z4
Length = 871
Score = 161 (61.7 bits), Expect = 9.0e-24, Sum P(3) = 9.0e-24
Identities = 53/198 (26%), Positives = 95/198 (47%)
Query: 211 ERGFKD------KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 263
E GF+D K P + +L SATL + A+ L P+ + + K+ ++L
Sbjct: 181 EMGFQDQLTETLKRIPESRQTLLFSATLPKMLVDFAKAGLTDPMLVRL-DVDEKVSDKLS 239
Query: 264 SYKLICESKLKPLYLVALLQSLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 321
+C K L+ L + + E + +VF ++++ + +L+ G + YS
Sbjct: 240 MVFCMCRPDEKLFALLHLCRRMDRENKQTVVFCATMKHVEYVVGILHRAG-IDCSFV-YS 297
Query: 322 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 381
L + R ++ F E + +LV +D RG+D+ ++ V+N P K ++HR GR
Sbjct: 298 QLDA-TARKMNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPPKAKLFVHRVGRV 356
Query: 382 ARAGQLGRCFTLLHKDEV 399
ARAG+ G +L+ DE+
Sbjct: 357 ARAGRSGTAISLIANDEL 374
Score = 143 (55.4 bits), Expect = 9.0e-24, Sum P(3) = 9.0e-24
Identities = 37/109 (33%), Positives = 59/109 (54%)
Query: 2 GISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
G + P+Q ++TI P + + +D+ S TGSGKT ++ +P++Q L R +RAL
Sbjct: 43 GFNQPTPIQ----RKTI-PCIMDGKDVVAMSRTGSGKTAAFVIPMLQKLKRRDTTGIRAL 97
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
+V PTR+LALQ V + GL VG I ++ S + + P +
Sbjct: 98 MVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHENPDI 146
Score = 95 (38.5 bits), Expect = 9.0e-24, Sum P(3) = 9.0e-24
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
E+ + DIL+ATPGRL+ H+ L ++ Y+V DE DRL +Q L L
Sbjct: 134 EEQFSTIHENPDILLATPGRLL-HVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETL 192
Query: 178 Q 178
+
Sbjct: 193 K 193
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 189 (71.6 bits), Expect = 9.7e-24, Sum P(3) = 9.7e-24
Identities = 54/199 (27%), Positives = 91/199 (45%)
Query: 212 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 271
R D+ P ++ SAT ++ +LA+ L + + G + +C
Sbjct: 259 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCME 318
Query: 272 KLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 328
K L+ L++ + E K I+F + L + G + I G + Q
Sbjct: 319 SEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH---GDKSQPE 375
Query: 329 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388
R L FR GK +L+++D +RG+DVE V V+NYD P + Y+HR GRTAR+ G
Sbjct: 376 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 435
Query: 389 RCFTLLHKDEVKRFKKLLQ 407
+T +K+ ++L++
Sbjct: 436 TAYTFFTPGNLKQARELIK 454
Score = 114 (45.2 bits), Expect = 9.7e-24, Sum P(3) = 9.7e-24
Identities = 29/99 (29%), Positives = 52/99 (52%)
Query: 89 LAVGQSSIADEISEL--IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 146
LA +AD+ + +K + G P+ +++L+ V+I +ATPGRL+D + A +
Sbjct: 175 LAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQ--IRDLERGVEICIATPGRLIDFLEAGK 232
Query: 147 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
L YLV+DE DR+L ++ + ++ R D +
Sbjct: 233 T-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 270
Score = 81 (33.6 bits), Expect = 9.7e-24, Sum P(3) = 9.7e-24
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDV 75
RD+ + TGSGKTL+Y LP + ++++ LV+ PTR+LA QV+ V
Sbjct: 128 RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQV 182
>POMBASE|SPAC22F3.08c [details] [associations]
symbol:rok1 "ATP-dependent RNA helicase Rok1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC22F3.08c GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000242486 KO:K14779
PIR:T38183 RefSeq:NP_593033.1 ProteinModelPortal:Q09775
STRING:Q09775 EnsemblFungi:SPAC22F3.08c.1 GeneID:2541786
KEGG:spo:SPAC22F3.08c OMA:ERESINT OrthoDB:EOG425926
NextBio:20802875 Uniprot:Q09775
Length = 481
Score = 218 (81.8 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 56/197 (28%), Positives = 98/197 (49%)
Query: 222 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 281
+ K + SAT+ +LA++ P+ + G + + ++ L S + ++
Sbjct: 222 ICKSLFSATIPSRVEELAKVVTVDPIRIIVG-LKDAATDSIDQRLLFVGSDTSKIVILRQ 280
Query: 282 LQSLGEEK--CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 339
+ S GE K ++F +E L T L F E+ + + G Q+ R + L FR+G
Sbjct: 281 MISNGELKPRVVIFVQDIERAKALYTELL-FDEIHVGV--IHGELPQAKREEALAKFRKG 337
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
+I VL+++D + RG+D GV V+N+D P + +YIHR GRT RAG G+ T K++
Sbjct: 338 EIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDG 397
Query: 400 KRFKKLLQKADNDSCPI 416
+ K + + C +
Sbjct: 398 EYIKLIAGVMRSSGCEV 414
Score = 123 (48.4 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 38/115 (33%), Positives = 62/115 (53%)
Query: 17 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 76
TIG +RDL +PTGSGKT++Y PI+Q L RA++V PTR+L Q+
Sbjct: 79 TIGS---KRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYRQA 135
Query: 77 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA--GICYD-PEDVLQELQSAV 128
++ L + + + +S+ ++I E K PKL +C P ++Q +Q+ +
Sbjct: 136 EKLSFGTSLKI-IELSKSN--EKIQE--KAPKLREKYDMCIGTPMRLVQAIQTGL 185
Score = 72 (30.4 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 22/83 (26%), Positives = 38/83 (45%)
Query: 123 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 182
+L+ D+ + TP RL+ I G + E + + V+DE DRL + +L S
Sbjct: 162 KLREKYDMCIGTPMRLVQAIQT--GLSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTS 219
Query: 183 DNENRFSDASTFLPSAFGSLKTI 205
N + ++T +PS L +
Sbjct: 220 SNICKSLFSAT-IPSRVEELAKV 241
>UNIPROTKB|Q08DT0 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP EMBL:DAAA02040206 EMBL:DAAA02040207
EMBL:DAAA02040208 EMBL:DAAA02040209 EMBL:DAAA02040210
EMBL:DAAA02040211 EMBL:DAAA02040212 EMBL:DAAA02040213
EMBL:DAAA02040214 EMBL:DAAA02040215 EMBL:DAAA02040216
EMBL:DAAA02040217 EMBL:BC123579 IPI:IPI00717487
RefSeq:NP_001070349.1 UniGene:Bt.63620 SMR:Q08DT0
Ensembl:ENSBTAT00000003086 GeneID:528483 KEGG:bta:528483
InParanoid:Q08DT0 NextBio:20874836 Uniprot:Q08DT0
Length = 876
Score = 228 (85.3 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 70/208 (33%), Positives = 103/208 (49%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 283
++ SAT T+ LA+L L +P ++ E +Y P LE ++CE + K L + L+
Sbjct: 250 LLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLR 309
Query: 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKI 341
S ++K IVF SS + L + F LR + + G Q+Q R + F +
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRV---FCRLRPGVSLLALHGRQQQMRRMEVYNEFVRKRA 366
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
VL ++D RG+D VN V+ +D P TYIHRAGRTAR + G +L E K
Sbjct: 367 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEKG 426
Query: 402 F-KKLLQKADNDSCPIHSI---PSSLIE 425
++LLQK P+ I P LI+
Sbjct: 427 MVQQLLQK----KVPVKEIKINPEKLID 450
Score = 121 (47.7 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 34/119 (28%), Positives = 60/119 (50%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLA 69
+ ++TIG L +D+ + TGSGKTL++ +P+++ L + L L++ PTR+LA
Sbjct: 95 IQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSADGLGVLIISPTRELA 154
Query: 70 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 128
Q +V + S GL +G + E +E I + +C P +LQ + +
Sbjct: 155 YQTFEVLRKVGKNHDFSAGLIIGGKDLKHE-AERINN--INILVC-TPGRLLQHMDETI 209
Score = 105 (42.0 bits), Expect = 5.8e-22, Sum P(2) = 5.8e-22
Identities = 34/119 (28%), Positives = 58/119 (48%)
Query: 82 AVGLSVGLAVGQSSIADEISELI----KRPKLEAGICYDPEDVLQELQ--SAVDILVATP 135
A GL V + +A + E++ K AG+ +D+ E + + ++ILV TP
Sbjct: 139 ADGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTP 198
Query: 136 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 193
GRL+ H++ T F +L LV+DE DR+L + + +++ L + FS T
Sbjct: 199 GRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTLLFSATQT 257
>WB|WBGene00022029 [details] [associations]
symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
Length = 399
Score = 182 (69.1 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 52/205 (25%), Positives = 96/205 (46%)
Query: 210 VERGFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
+ +GFK++ Y P ++LSATL + ++ + P+ + L
Sbjct: 181 LNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIK 240
Query: 263 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 322
+ + + + K L+ L +L + ++F ++ ++ L + E + G
Sbjct: 241 QFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNT---RRKVDWLTDKMKEANFTVSSMHG 297
Query: 323 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 382
Q R + +K FR G +VL+S+D RG+DV V+ V+NYD P + YIHR GR+
Sbjct: 298 DMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSG 357
Query: 383 RAGQLGRCFTLLHKDEVKRFKKLLQ 407
R G+ G + +D+V+ + + Q
Sbjct: 358 RFGRKGVAINFVKQDDVRILRDIEQ 382
Score = 129 (50.5 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 27/92 (29%), Positives = 57/92 (61%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ Q I L RD+ + +G+GKT ++++ ++Q+L + VR +AL++ PTR+LA+Q
Sbjct: 51 AIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQ-VRETQALILSPTRELAVQ 109
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
++ V A+ + + +G +++ ++I +L
Sbjct: 110 IQKVVLALGDYMNVQCHACIGGTNLGEDIRKL 141
Score = 67 (28.6 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
ED+ ++L ++ TPGR+ D I R + LV+DE D +L + ++ L
Sbjct: 136 EDI-RKLDYGQHVVSGTPGRVFDMIRR-RNLRTRAIKLLVLDEADEMLNKGFKEQL 189
>SGD|S000002319 [details] [associations]
symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
GermOnline:YDL160C Uniprot:P39517
Length = 506
Score = 215 (80.7 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 69/240 (28%), Positives = 112/240 (46%)
Query: 189 SDASTFL-PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 247
SD S F+ A L + +E+ P P ++ SAT + LH P
Sbjct: 187 SDCSLFIMDEADKMLSRDFKTIIEQILSFLP-PTHQSLLFSATFPLTVKEFMVKHLHKPY 245
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307
+ E L + + Y E + K L L L + I+F +S T+R+ L
Sbjct: 246 EINLME-ELTL-KGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNS---TNRVELLA 300
Query: 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367
+L +Q R+K FR+GK++ LV SD +TRG+D++ VN V+N+D
Sbjct: 301 KKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDF 360
Query: 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESL 427
P +TY+HR GR+ R G LG L++ ++ K+ Q+ + I +IP+++ +SL
Sbjct: 361 PKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTE---IAAIPATIDKSL 417
Score = 127 (49.8 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 29/104 (27%), Positives = 56/104 (53%)
Query: 1 MGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MGI F + +E I + RD+ + G+GKT ++ +P ++ + + + ++A
Sbjct: 59 MGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNK-IQA 117
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
L+++PTR+LALQ V + G+S + G +++ D+I L
Sbjct: 118 LIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL 161
Score = 80 (33.2 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
+D+L+ L V ILV TPGR++D + + + L ++DE D++L ++ + +L
Sbjct: 156 DDILR-LNETVHILVGTPGRVLD-LASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQIL 213
Query: 178 QLTRSDNENRFSDASTF 194
+++ A TF
Sbjct: 214 SFLPPTHQSLLFSA-TF 229
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 187 (70.9 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 58/196 (29%), Positives = 89/196 (45%)
Query: 215 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER--LESYKLICE-S 271
K+ P R M +AT + K+A L +P + G + + + +++
Sbjct: 330 KEIPTKRQTLMY-TATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPME 388
Query: 272 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 331
K + L + Q G K I+F S T R+C L + G + Q R
Sbjct: 389 KQRRLEQILRSQEPGS-KVIIFCS----TKRMCDQLTRNLTRQFGAAAIHGDKSQPERDN 443
Query: 332 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 391
L FR G+ VLV++D RG+DV+ + VVNYD P ++ Y+HR GRT RAG G+ F
Sbjct: 444 VLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAF 503
Query: 392 TLLHKDEVKRFKKLLQ 407
T + K L++
Sbjct: 504 TFFGDQDSKHASDLIK 519
Score = 107 (42.7 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
L++L+ DI+VATPGRL D + R +L + YLV+DE DR+L ++ + +++
Sbjct: 274 LRDLERGADIVVATPGRLNDILEMRR-ISLRQISYLVLDEADRMLDMGFEPQIRKIVK 330
Score = 94 (38.1 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP---IVQTLSNRAVRCLR 58
G S+ P+Q W + G RD+ + TGSGKTL Y +P +Q + N +
Sbjct: 177 GFSAPTPIQAQSWPIAM-QG---RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPT 232
Query: 59 ALVVLPTRDLALQVKD 74
LV+ PTR+LA Q+++
Sbjct: 233 ILVLSPTRELATQIQE 248
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 235 (87.8 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 72/240 (30%), Positives = 113/240 (47%)
Query: 183 DNENRFSDASTFLPSAFGSLKTIRRCGV-----ERGFKDKPYPRLVKMVLSATLTQDPNK 237
D +R D F P G L + + E +K R M SAT+ +
Sbjct: 470 DEADRMIDMG-FEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYM-FSATMPPGVER 527
Query: 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 297
LA+ L +P+ +T G T K + + + ++ + K L LL LGE+ IVF ++
Sbjct: 528 LARKYLRNPVVVTIG-TAGKTTDLISQHVIMMKESEKFFRLQKLLDELGEKTAIVFVNTK 586
Query: 298 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 357
++ + L+ G ++ G + Q R +L+ FR + VLV++D + RG+D+
Sbjct: 587 KNCDSIAKNLDKAG---YRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIP 643
Query: 358 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLG--RCFTLLHKDEVKRFKKLLQKADNDSCP 415
V +V+NYD P +I+ Y HR GRT RAG+ G F LH EV K + N + P
Sbjct: 644 DVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQSNSAVP 703
Score = 110 (43.8 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 41/166 (24%), Positives = 78/166 (46%)
Query: 21 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI- 79
GL +RD+ + TGSGKT ++ LP++ +S LP + + +A +
Sbjct: 347 GLQQRDVIGIAETGSGKTAAFVLPMLAYISR-----------LPPMSEENETEGPYAVVM 395
Query: 80 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 139
AP L+ + A + + + G + + + ++ +I++ATPGRL+
Sbjct: 396 APTRELAQQIEEETVKFAHYLG--FRVTSIVGGQSIEEQGL--KITQGCEIVIATPGRLI 451
Query: 140 DHINATRGFTLEHLC-YLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
D + R + + + C Y+V+DE DR++ ++ + VL S N
Sbjct: 452 DCLE--RRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSN 495
Score = 101 (40.6 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 32/99 (32%), Positives = 51/99 (51%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-------RAVRCLRAL 60
P+Q+A I GL +RD+ + TGSGKT ++ LP++ +S A+
Sbjct: 338 PIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAV 393
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 99
V+ PTR+LA Q+++ A +G V VG SI ++
Sbjct: 394 VMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQ 432
>UNIPROTKB|Q9NY93 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0003723 EMBL:CH236960 EMBL:CH471128
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
CleanEx:HS_DDX21 CTD:54606 HOVERGEN:HBG051334 OrthoDB:EOG47H5PT
EMBL:AJ131712 EMBL:AF247666 EMBL:AL136700 EMBL:AK022774
EMBL:AK315363 EMBL:CR457213 EMBL:AC004938 EMBL:BC001235
IPI:IPI00302281 IPI:IPI00925037 RefSeq:NP_001244118.1
RefSeq:NP_061955.1 UniGene:Hs.654762 ProteinModelPortal:Q9NY93
SMR:Q9NY93 IntAct:Q9NY93 STRING:Q9NY93 PhosphoSite:Q9NY93
DMDM:20139238 SWISS-2DPAGE:Q9NY93 PaxDb:Q9NY93 PRIDE:Q9NY93
DNASU:54606 Ensembl:ENST00000258772 Ensembl:ENST00000431640
GeneID:54606 KEGG:hsa:54606 UCSC:uc003tlg.3 GeneCards:GC07M044571
HGNC:HGNC:18193 HPA:HPA019749 MIM:608023 neXtProt:NX_Q9NY93
PharmGKB:PA134916346 InParanoid:Q9NY93 PhylomeDB:Q9NY93
GenomeRNAi:54606 NextBio:57133 ArrayExpress:Q9NY93 Bgee:Q9NY93
CleanEx:HS_DDX56 Genevestigator:Q9NY93 GermOnline:ENSG00000136271
Uniprot:Q9NY93
Length = 547
Score = 148 (57.2 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 42/142 (29%), Positives = 77/142 (54%)
Query: 220 PRLVK-MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLY 277
PR+ + ++SAT +D L +L LH+P+ L E++ P++L+ ++++CE++ K L
Sbjct: 188 PRIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLL 247
Query: 278 LVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 336
L ALL+ SL K ++F +++E ++RL L F I +G R + F
Sbjct: 248 LYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFS---IPTCVLNGELPLRSRCHIISQF 304
Query: 337 REGKIQVLVSSDAMTRGMDVEG 358
+G ++++DA G V+G
Sbjct: 305 NQGFYDCVIATDAEVLGAPVKG 326
Score = 141 (54.7 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 51/170 (30%), Positives = 81/170 (47%)
Query: 15 QETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAV------RCLRALVVLPTRD 67
QE P E +DL + TGSGKT +YA+P++Q L +R + +R LV++PT++
Sbjct: 34 QEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPVVEQAVRGLVLVPTKE 93
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q + + +A V +A S+ D +S+ VL E
Sbjct: 94 LARQAQSMIQQLATYCARDVRVA-NVSAAEDSVSQ---------------RAVLMEKP-- 135
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
D++V TP R++ H+ + L LVVDE D L ++ L ++L
Sbjct: 136 -DVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLL 184
Score = 101 (40.6 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 350 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
+ RG+D V+ V+N+D P + YIHRAGRTARA G T +
Sbjct: 345 VARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFV 389
>UNIPROTKB|J9NU36 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00530000062880 EMBL:AAEX03006506
EMBL:AAEX03006505 Ensembl:ENSCAFT00000049437 Uniprot:J9NU36
Length = 423
Score = 175 (66.7 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 56/223 (25%), Positives = 106/223 (47%)
Query: 210 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 205 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 264
Query: 263 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 322
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 265 QFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKM-HARDFTVSAMH--G 321
Query: 323 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 382
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 322 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 381
Query: 383 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIE 425
R G+ G ++ +++ KR + ++ N S I +P ++ +
Sbjct: 382 RFGRKGVAINMVTEED-KRTLRDIETFYNTS--IEEMPLNVAD 421
Score = 123 (48.4 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 29/99 (29%), Positives = 57/99 (57%)
Query: 15 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 74
Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q++
Sbjct: 77 QRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQIQK 135
Query: 75 VFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 112
V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 136 VVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 174
Score = 82 (33.9 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 121 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 161 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 219
Query: 180 TRSDNE 185
S+ +
Sbjct: 220 LNSNTQ 225
>WB|WBGene00018007 [details] [associations]
symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
Length = 399
Score = 182 (69.1 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 52/205 (25%), Positives = 96/205 (46%)
Query: 210 VERGFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
+ +GFK++ Y P ++LSATL + ++ + P+ + L
Sbjct: 181 LNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIK 240
Query: 263 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 322
+ + + + K L+ L +L + ++F ++ ++ L + E + G
Sbjct: 241 QFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNT---RRKVDWLTDKMKEANFTVSSMHG 297
Query: 323 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 382
Q R + +K FR G +VL+S+D RG+DV V+ V+NYD P + YIHR GR+
Sbjct: 298 DMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSG 357
Query: 383 RAGQLGRCFTLLHKDEVKRFKKLLQ 407
R G+ G + +D+V+ + + Q
Sbjct: 358 RFGRKGVAINFVKQDDVRILRDIEQ 382
Score = 128 (50.1 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 26/92 (28%), Positives = 57/92 (61%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ Q + L RD+ + +G+GKT ++++ ++Q+L + VR +AL++ PTR+LA+Q
Sbjct: 51 AIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQ-VRETQALILSPTRELAVQ 109
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
++ V A+ + + +G +++ ++I +L
Sbjct: 110 IQKVVLALGDYMNVQCHACIGGTNLGEDIRKL 141
Score = 67 (28.6 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 173
ED+ ++L ++ TPGR+ D I R + LV+DE D +L + ++ L
Sbjct: 136 EDI-RKLDYGQHVVSGTPGRVFDMIRR-RNLRTRAIKLLVLDEADEMLNKGFKEQL 189
>MGI|MGI:1924841 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1924841 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP ChiTaRS:DDX10 EMBL:BC049261
IPI:IPI00896604 RefSeq:NP_084212.2 UniGene:Mm.133560
ProteinModelPortal:Q80Y44 SMR:Q80Y44 STRING:Q80Y44
PhosphoSite:Q80Y44 PaxDb:Q80Y44 PRIDE:Q80Y44
Ensembl:ENSMUST00000065630 GeneID:77591 KEGG:mmu:77591
UCSC:uc009plz.2 InParanoid:Q80Y44 NextBio:347162 Bgee:Q80Y44
CleanEx:MM_DDX10 Genevestigator:Q80Y44
GermOnline:ENSMUSG00000053289 Uniprot:Q80Y44
Length = 875
Score = 227 (85.0 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 73/208 (35%), Positives = 101/208 (48%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 283
++ SAT T+ LA+L L P ++ E +Y P LE +ICE K L + L+
Sbjct: 250 LLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLFSFLR 309
Query: 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKI 341
S ++K IVF SS + L + F LR I I G Q+Q R + F +
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRV---FCRLRPGISILALHGRQQQMRRMEVYNEFVRKRA 366
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT-LLHKDEVK 400
VL ++D RG+D VN V+ +D P TYIHRAGRTAR + G LL +E
Sbjct: 367 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQG 426
Query: 401 RFKKLLQKADNDSCPIHSI---PSSLIE 425
++LLQK P+ I P LI+
Sbjct: 427 MVQQLLQK----KVPVKEIKINPEKLID 450
Score = 121 (47.7 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 34/119 (28%), Positives = 60/119 (50%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLA 69
+ ++TIG L +D+ + TGSGKTL++ +P+++ L + L L++ PTR+LA
Sbjct: 95 IQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA 154
Query: 70 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 128
Q +V + S GL +G + E +E I + +C P +LQ + +
Sbjct: 155 YQTFEVLRKVGKNHDFSAGLIIGGKDLKHE-AERINN--INILVC-TPGRLLQHMDETI 209
Score = 104 (41.7 bits), Expect = 9.7e-22, Sum P(2) = 9.7e-22
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 105 KRPKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 162
K AG+ +D+ E + + ++ILV TPGRL+ H++ T F +L LV+DE D
Sbjct: 166 KNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEAD 225
Query: 163 RLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 193
R+L + + +++ L + FS T
Sbjct: 226 RILDMGFADTMNAIIENLPKKRQTLLFSATQT 257
>UNIPROTKB|I3LLD5 [details] [associations]
symbol:I3LLD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 Ensembl:ENSSSCT00000032168 OMA:SKRERIM
Uniprot:I3LLD5
Length = 401
Score = 169 (64.5 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 60/226 (26%), Positives = 109/226 (48%)
Query: 210 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPL--FLTT-GETRYKLP 259
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ LT G ++ +
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRIXLTLEGIRQFYIN 247
Query: 260 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE 319
E +KL L LY ++L + ++F ++ L + H + +
Sbjct: 248 VEREEWKL---DTLCDLY-----ETLTITQAVIFINTRRKVDWLTEKM-HARDFTVSAMH 298
Query: 320 YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAG 379
G Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR G
Sbjct: 299 --GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIG 356
Query: 380 RTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIE 425
R R G+ G ++ +++ KR + ++ N S I +P ++ +
Sbjct: 357 RGGRFGRKGVAINMVTEED-KRTLRDIETFYNTS--IEEMPLNVAD 399
Score = 128 (50.1 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 112
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 121 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 180 TRSDNE 185
S+ +
Sbjct: 203 LNSNTQ 208
>RGD|1308990 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1308990
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 CTD:1662 OrthoDB:EOG4BK536 OMA:ADKVIEP
IPI:IPI00869603 RefSeq:NP_001100290.1 UniGene:Rn.99481
Ensembl:ENSRNOT00000017683 GeneID:300710 KEGG:rno:300710
UCSC:RGD:1308990 NextBio:647348 Uniprot:D3ZBY5
Length = 874
Score = 225 (84.3 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 73/208 (35%), Positives = 100/208 (48%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 283
++ SAT T+ LA+L L P ++ E +Y P LE +ICE K L + L+
Sbjct: 250 LLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLFSFLR 309
Query: 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKI 341
S +K IVF SS + L + F LR I I G Q+Q R + F +
Sbjct: 310 SHLTKKSIVFFSSCKEVQYLYRV---FCRLRPGISILALHGRQQQMRRMEVYNEFVRKRA 366
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT-LLHKDEVK 400
VL ++D RG+D VN V+ +D P TYIHRAGRTAR + G LL +E
Sbjct: 367 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQG 426
Query: 401 RFKKLLQKADNDSCPIHSI---PSSLIE 425
++LLQK P+ I P LI+
Sbjct: 427 MVQQLLQK----KVPVKEIKINPEKLID 450
Score = 121 (47.7 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 34/119 (28%), Positives = 60/119 (50%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLA 69
+ ++TIG L +D+ + TGSGKTL++ +P+++ L + L L++ PTR+LA
Sbjct: 95 IQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA 154
Query: 70 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 128
Q +V + S GL +G + E +E I + +C P +LQ + +
Sbjct: 155 YQTFEVLRKVGKNHDFSAGLIIGGKDLKHE-AERINN--INILVC-TPGRLLQHMDETI 209
Score = 104 (41.7 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 105 KRPKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 162
K AG+ +D+ E + + ++ILV TPGRL+ H++ T F +L LV+DE D
Sbjct: 166 KNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEAD 225
Query: 163 RLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 193
R+L + + +++ L + FS T
Sbjct: 226 RILDMGFADTMNAIIENLPKKRQTLLFSATQT 257
>UNIPROTKB|E2QSR5 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
Ensembl:ENSCAFT00000014352 Uniprot:E2QSR5
Length = 912
Score = 196 (74.1 bits), Expect = 3.6e-23, Sum P(3) = 3.6e-23
Identities = 55/177 (31%), Positives = 91/177 (51%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SATL + + A+ L P+ + + KL E+L++ + K L+ LL++
Sbjct: 273 VLFSATLPKLLVEFARAGLTEPVLIRL-DVDAKLNEQLKTSFFLVREDTKAAVLLHLLRT 331
Query: 285 L--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+ +++ +VF ++ L LL G I YS L Q+ R L F K
Sbjct: 332 VVRPQDQTVVFVATKHHAEYLSELLTTQGVSCTHI--YSALD-QTARKINLAKFTHNKCS 388
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
L+ +D RG+D+ ++NV+NY PA K ++HR GR ARAG+ G ++L+ DEV
Sbjct: 389 ALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEV 445
Score = 125 (49.1 bits), Expect = 3.6e-23, Sum P(3) = 3.6e-23
Identities = 30/104 (28%), Positives = 53/104 (50%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPT 65
+ V + ++TI L +D+ + TGSGKT + +P+ + L + + RAL++ PT
Sbjct: 116 YKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFERLKTHSAQTGARALILSPT 175
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
R+LALQ + GL L +G + D+ + L + P +
Sbjct: 176 RELALQTMKFTKELGKFTGLRTALILGGDKMEDQFAALHENPDI 219
Score = 69 (29.3 bits), Expect = 3.6e-23, Sum P(3) = 3.6e-23
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
ED L DI++ATPGRL+ H+ L+ + Y VD D L + L ++
Sbjct: 207 EDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEY--VDSIDWLFEMGFAEQLQEII 263
>ASPGD|ASPL0000014018 [details] [associations]
symbol:fal1 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:BN001302 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACD01000139 KO:K13025 RefSeq:XP_681285.1
ProteinModelPortal:Q5AUL4 SMR:Q5AUL4 PRIDE:Q5AUL4
EnsemblFungi:CADANIAT00004036 GeneID:2869287 KEGG:ani:AN8016.2
OMA:EDWKFDT OrthoDB:EOG4HTD1W Uniprot:Q5AUL4
Length = 399
Score = 184 (69.8 bits), Expect = 3.7e-23, Sum P(3) = 3.7e-23
Identities = 57/218 (26%), Positives = 101/218 (46%)
Query: 210 VERGFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
+ RGF+++ Y P +V+SATL D + + P+ + L E +
Sbjct: 180 LNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTL-EGI 238
Query: 263 ESYKLICESK-LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 321
+ Y + E + K L L +L + ++F ++ ++ L + E +
Sbjct: 239 KQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNT---RRKVDWLTDKMREANFTVSSMH 295
Query: 322 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 381
G Q R ++ FR+G +VL+S+D RG+DV+ V+ V+NYD P + YIHR GR+
Sbjct: 296 GEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRS 355
Query: 382 ARAGQLGRCFTLLHKDEVKRFK--KLLQKADNDSCPIH 417
R G+ G + D+V+ + +L D P++
Sbjct: 356 GRFGRKGVAINFVTSDDVRILRDIELYYSTQIDEMPMN 393
Score = 115 (45.5 bits), Expect = 3.7e-23, Sum P(3) = 3.7e-23
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84
RD + +G+GKT ++++ +Q + VR +ALV+ PTR+LA Q++ V A+ +
Sbjct: 63 RDTIAQAQSGTGKTATFSISALQVIDT-VVRETQALVLSPTRELATQIQSVIMALGDYMN 121
Query: 85 LSVGLAVGQSSIADEISEL 103
+ +G ++I ++I +L
Sbjct: 122 VQCHACIGGTNIGEDIRKL 140
Score = 74 (31.1 bits), Expect = 3.7e-23, Sum P(3) = 3.7e-23
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
ED+ ++L ++ TPGR+ D I R H+ LV+DE D LL ++
Sbjct: 135 EDI-RKLDYGQHVVSGTPGRVADMIRR-RHLRTRHIKMLVLDEADELLNRGFR 185
>UNIPROTKB|F1N0P2 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:DAAA02019036 IPI:IPI00709252
UniGene:Bt.61505 Ensembl:ENSBTAT00000056136 OMA:PLEPKEY
Uniprot:F1N0P2
Length = 392
Score = 211 (79.3 bits), Expect = 3.7e-23, Sum P(2) = 3.7e-23
Identities = 47/156 (30%), Positives = 84/156 (53%)
Query: 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE----KCIVFTSSVESTHRL 303
F + + E+L+ L+ K+K YLV L+Q+ +E I+FT++ ++ L
Sbjct: 114 FFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQNFQDEHEDWSIIIFTNTCKTCQIL 173
Query: 304 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 363
C +L F + + + +Q R L F+ ++L+++D +RG+D+ V V+
Sbjct: 174 CMMLRKFNFPTVALHS---MMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVI 230
Query: 364 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
N++ P K YIHR GRTARAG+ G+ TL+ + ++
Sbjct: 231 NHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDI 266
Score = 121 (47.7 bits), Expect = 3.7e-23, Sum P(2) = 3.7e-23
Identities = 35/94 (37%), Positives = 50/94 (53%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRCLR 58
MG+ PVQ+ P + E RD C+ + TGSGKT ++ LPI+Q LS
Sbjct: 20 MGLKQPTPVQLGCI-----PAILEGRD-CLGCAKTGSGKTAAFVLPILQKLSEDPYGIF- 72
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 92
LV+ PTR+LA Q+ + F + +GL + VG
Sbjct: 73 CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVG 106
>SGD|S000003139 [details] [associations]
symbol:ROK1 "RNA-dependent ATPase" species:4932
"Saccharomyces cerevisiae" [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0030686
"90S preribosome" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0048254 "snoRNA localization" evidence=IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000472 "endonucleolytic
cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003139
GO:GO:0005524 GO:GO:0005730 EMBL:BK006941 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:X85757
GO:GO:0030686 GO:GO:0004004 GO:GO:0000447 GO:GO:0000472
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000480
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486 KO:K14779
OMA:NVMKQSG OrthoDB:EOG425926 EMBL:Z34901 EMBL:Z72693 PIR:S59649
RefSeq:NP_011344.1 ProteinModelPortal:P45818 SMR:P45818
DIP:DIP-5111N IntAct:P45818 MINT:MINT-483312 STRING:P45818
PaxDb:P45818 PeptideAtlas:P45818 EnsemblFungi:YGL171W GeneID:852704
KEGG:sce:YGL171W CYGD:YGL171w NextBio:972056 Genevestigator:P45818
GermOnline:YGL171W GO:GO:0048254 Uniprot:P45818
Length = 564
Score = 209 (78.6 bits), Expect = 3.9e-23, Sum P(2) = 3.9e-23
Identities = 54/199 (27%), Positives = 93/199 (46%)
Query: 220 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 279
P L K + SAT+ + ++AQ + P+ + G + +E + C ++ L +
Sbjct: 304 PSLRKAMFSATIPSNVEEIAQSIMMDPVRVIIGH-KEAANTNIEQKLIFCGNEEGKLIAI 362
Query: 280 ALLQSLGEEK--CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 337
L GE K I+F +ES R L + RI + + R + ++ F+
Sbjct: 363 RQLVQEGEFKPPIIIF---LESITRAKALYHELMYDRINVDVIHAERTALQRDRIIERFK 419
Query: 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 397
G++ L+ +D + RG+D +GVN V+NYD P + Y+HR GRT R G+ G+ T K
Sbjct: 420 TGELWCLICTDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITFYTKQ 479
Query: 398 EVKRFKKLLQKADNDSCPI 416
+ K ++ C +
Sbjct: 480 DSVAIKPIINVMKQSGCEV 498
Score = 131 (51.2 bits), Expect = 3.9e-23, Sum P(2) = 3.9e-23
Identities = 48/197 (24%), Positives = 92/197 (46%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-SNRAVRCLRAL 60
G + P+Q E I L RD+ PTGSGKTL++ +P+VQ + ++ L+ L
Sbjct: 141 GFTEPTPIQC----ECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQIIDDKQTAGLKGL 196
Query: 61 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 120
++ PT++LA Q+ ++ + L + + ++ + KL+ + D +
Sbjct: 197 IISPTKELANQIFIECFKLSYKIFLEKKRPLQVALLSKSLGA-----KLKNKVVSDKK-- 249
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
DI+++TP RL+D + L + +L+ DE D+L + + +L
Sbjct: 250 -------YDIIISTPLRLIDVVK-NEALDLSKVKHLIFDEADKLFDKTFVEQSDDILSAC 301
Query: 181 RSDNENRFSDASTFLPS 197
R + + ++T +PS
Sbjct: 302 REPSLRKAMFSAT-IPS 317
>POMBASE|SPBC776.09 [details] [associations]
symbol:ste13 "ATP-dependent RNA helicase Ste13"
species:4896 "Schizosaccharomyces pombe" [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=ISO] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0030996 "cell cycle arrest in response to
nitrogen starvation" evidence=IMP] [GO:0031142 "induction of
conjugation upon nitrogen starvation" evidence=IMP] [GO:0051028
"mRNA transport" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC776.09
GO:GO:0005524 GO:GO:0006417 EMBL:CU329671 GO:GO:0006397
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0031142 eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000290
OrthoDB:EOG4QJVWF EMBL:D29795 PIR:S46654 RefSeq:NP_596324.1
ProteinModelPortal:Q09181 SMR:Q09181 STRING:Q09181 PRIDE:Q09181
EnsemblFungi:SPBC776.09.1 GeneID:2541216 KEGG:spo:SPBC776.09
NextBio:20802328 GO:GO:0030996 Uniprot:Q09181
Length = 485
Score = 186 (70.5 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 66/218 (30%), Positives = 103/218 (47%)
Query: 219 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 278
Y +++ + + NK +++L L L G T+Y Y + ES+ K L
Sbjct: 223 YSATFPLIVKNFMDKHLNKPYEINLMDELTLR-GVTQY--------YAFVDESQ-KVHCL 272
Query: 279 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 338
L L + I+F +S T+R+ L EL QS R++ FR
Sbjct: 273 NTLFSKLQINQSIIFCNS---TNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRN 329
Query: 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
G + LV SD +TRG+D++ VN V+N+D P +TY+HR GR+ R G G + + +
Sbjct: 330 GVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWAD 389
Query: 399 VKRFKKLLQKADND-SCPIHSIPSSLIESLRPVYKSGD 435
RF L + +N+ I IP S+ SL V+ +GD
Sbjct: 390 --RFN--LYRIENELGTEIQPIPPSIDPSLY-VFPNGD 422
Score = 121 (47.7 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 28/104 (26%), Positives = 56/104 (53%)
Query: 1 MGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MGI F + +E+I L RD+ + G+GKT ++ +P ++ + + + ++
Sbjct: 57 MGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSK-IQT 115
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
L+++PTR+LALQ V + + + V + G +++ D+I L
Sbjct: 116 LILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRL 159
Score = 71 (30.1 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY-LVVDETDRLLREAYQAWLPTV 176
+D+++ L V I+V TPGR++D A +G C V+DE D+LL + P +
Sbjct: 154 DDIIR-LNDTVHIVVGTPGRVLDL--AGKGVADFSECTTFVMDEADKLLSPEFT---PII 207
Query: 177 LQLTRSDNENR 187
QL +NR
Sbjct: 208 EQLLSYFPKNR 218
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 230 (86.0 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 65/209 (31%), Positives = 107/209 (51%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SAT +LA L P+ + G + ++ +I + K LQS
Sbjct: 397 IMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEFLQS 456
Query: 285 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
L ++K IVF S L + L+ G I ++ G + QS R + L F+ GK+++
Sbjct: 457 LSPKDKVIVFVSRKLIADDLSSDLSIQG---IPVQSLHGDREQSDRERALDDFKTGKVKI 513
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 403
L+++D +RG+DV V +V NY+ P I+ Y+HR GRT RAG++G TL+ +D+ K
Sbjct: 514 LIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAG 573
Query: 404 KLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+L++ + SIP L+ S+ YK
Sbjct: 574 ELIEILQRAN---QSIPEDLL-SMAEQYK 598
Score = 109 (43.4 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
+Q++ VDI++ATPGRL D + L + YLV+DE D++L ++ + +L
Sbjct: 332 IQDIMKGVDIIIATPGRLND-LQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDV 390
Query: 181 RSDNENRFSDAS 192
R D + + A+
Sbjct: 391 RPDRQTIMTSAT 402
Score = 90 (36.7 bits), Expect = 3.9e-21, Sum P(2) = 3.9e-21
Identities = 53/190 (27%), Positives = 84/190 (44%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLR-- 58
G P+Q W + G+ DL + TG+GKTLSY +P L+++ V R R
Sbjct: 234 GFQKPTPIQSQAWPIVL-QGI---DLIGIAQTGTGKTLSYLMPGFIHLNSQPVSRGKRNG 289
Query: 59 --ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 116
LV+ PTR+LALQV + + GL G + +I +++K + I
Sbjct: 290 PGMLVLTPTRELALQVGAECSKYSYK-GLKSVCIYGGGNRKGQIQDIMKGVDI---IIAT 345
Query: 117 PEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEH-LCYLVVD-ETDRLLREAYQAW 172
P L +LQ + V++ T ++D + EH + +++D DR W
Sbjct: 346 PGR-LNDLQMNNFVNLRSITY-LVLDEADKMLDLGFEHQIMKILLDVRPDRQTIMTSATW 403
Query: 173 LPTVLQLTRS 182
T+ QL S
Sbjct: 404 PDTIRQLAHS 413
Score = 38 (18.4 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 208 CGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
C E F PYP L+K + A Q P +
Sbjct: 214 CKFEDAFG--PYPELMKSIKKAGF-QKPTPI 241
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 175 (66.7 bits), Expect = 4.1e-23, Sum P(2) = 4.1e-23
Identities = 49/185 (26%), Positives = 92/185 (49%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK-LPERLESYKLICESKLKPLYLVALLQ 283
++ SAT + L Q L++P+ + L +R+ + + + + K L L+Q
Sbjct: 196 LLFSATFPEQVTTLTQELLNNPIEIQLQSADASTLVQRVFT---VNKGE-KTAVLAHLIQ 251
Query: 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
+ ++F V + H L + I + G + QS RS+ L F+ G I+V
Sbjct: 252 QEQWRQALIF---VNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKAGDIEV 308
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 403
L+++D RG+D+E + V+N++ P Y+HR GR+ RAG++G +L+ ++ F
Sbjct: 309 LIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLIDHEDYHHFS 368
Query: 404 KLLQK 408
+ +K
Sbjct: 369 VIEKK 373
Score = 164 (62.8 bits), Expect = 4.1e-23, Sum P(2) = 4.1e-23
Identities = 62/184 (33%), Positives = 90/184 (48%)
Query: 20 PGLFE-RDLCINSPTGSGKTLSYALPIVQTL--------SNRAVRCLRALVVLPTRDLAL 70
P +F RDL + TGSGKT ++ALP++Q L N + LV++PTR+LA
Sbjct: 40 PSVFAGRDLIAGANTGSGKTATFALPMLQKLREDISSGSKNSKGNFVTGLVLVPTRELAK 99
Query: 71 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 130
QV D S+ S A + IK + G+ + + + L+ VDI
Sbjct: 100 QVAD-----------SI------KSYAVHFNGEIKTLAVFGGVSVNIQ--MLALRGGVDI 140
Query: 131 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 190
LVATPGRL+D I++ L+ + LV+DE DR+L + L +L LT +
Sbjct: 141 LVATPGRLLDLISSN-AIKLDKVKTLVLDEADRMLSLGFTEELTALLALTPKKKQTLLFS 199
Query: 191 ASTF 194
A TF
Sbjct: 200 A-TF 202
>ASPGD|ASPL0000036135 [details] [associations]
symbol:AN10417 species:162425 "Emericella nidulans"
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0003724 "RNA
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0030996 "cell
cycle arrest in response to nitrogen starvation" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IEA]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0031142 "induction of
conjugation upon nitrogen starvation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001306 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 OMA:HIDPARF
EnsemblFungi:CADANIAT00009573 Uniprot:C8VHA5
Length = 498
Score = 197 (74.4 bits), Expect = 4.1e-23, Sum P(2) = 4.1e-23
Identities = 67/227 (29%), Positives = 102/227 (44%)
Query: 210 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER-LESYKLI 268
+E+ P R V M+ SAT + +P + + +L R + Y
Sbjct: 202 IEQLLSFHPKDRQV-MLFSATFPMIVKSFKDRHMRNPYEINLMD---ELTLRGITQYYAF 257
Query: 269 CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 328
E K K L L L + I+F +S T+R+ L EL Q
Sbjct: 258 VEEKQKVHCLNTLFSKLQINQSIIFCNS---TNRVELLAKKITELGYSCFYSHARMLQQH 314
Query: 329 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388
R++ FR G + LV SD +TRG+D++ VN V+N+D P +TY+HR GR+ R G LG
Sbjct: 315 RNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG 374
Query: 389 RCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSGD 435
L++ D+ K+ Q+ + I IP ++ + L VY S D
Sbjct: 375 LAINLINWDDRFNLYKIEQELGTE---IQPIPQNIDKKLY-VYDSPD 417
Score = 142 (55.0 bits), Expect = 4.1e-23, Sum P(2) = 4.1e-23
Identities = 40/141 (28%), Positives = 70/141 (49%)
Query: 1 MGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 59
MGI F + +ETI L RD+ + G+GKT ++ +P ++ ++ ++ + +A
Sbjct: 52 MGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKT-QA 110
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 119
L+++PTR+LALQ V + +G++V + G + + D+I L + G P
Sbjct: 111 LILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGT---PGR 167
Query: 120 VLQELQSAVDILVATPGRLMD 140
VL V L P +MD
Sbjct: 168 VLDLASKGVADLSECPTFVMD 188
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 230 (86.0 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 65/209 (31%), Positives = 107/209 (51%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SAT +LA L P+ + G + ++ +I + K LQS
Sbjct: 406 IMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEFLQS 465
Query: 285 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
L ++K IVF S L + L+ G I ++ G + QS R + L F+ GK+++
Sbjct: 466 LSPKDKVIVFVSRKLIADDLSSDLSIQG---IPVQSLHGDREQSDRERALDDFKTGKVKI 522
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 403
L+++D +RG+DV V +V NY+ P I+ Y+HR GRT RAG++G TL+ +D+ K
Sbjct: 523 LIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAG 582
Query: 404 KLLQKADNDSCPIHSIPSSLIESLRPVYK 432
+L++ + SIP L+ S+ YK
Sbjct: 583 ELIEILQRAN---QSIPEDLL-SMAEQYK 607
Score = 109 (43.4 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
+Q++ VDI++ATPGRL D + L + YLV+DE D++L ++ + +L
Sbjct: 341 IQDIMKGVDIIIATPGRLND-LQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDV 399
Query: 181 RSDNENRFSDAS 192
R D + + A+
Sbjct: 400 RPDRQTIMTSAT 411
Score = 90 (36.7 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 53/190 (27%), Positives = 84/190 (44%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLR-- 58
G P+Q W + G+ DL + TG+GKTLSY +P L+++ V R R
Sbjct: 243 GFQKPTPIQSQAWPIVL-QGI---DLIGIAQTGTGKTLSYLMPGFIHLNSQPVSRGKRNG 298
Query: 59 --ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 116
LV+ PTR+LALQV + + GL G + +I +++K + I
Sbjct: 299 PGMLVLTPTRELALQVGAECSKYSYK-GLKSVCIYGGGNRKGQIQDIMKGVDI---IIAT 354
Query: 117 PEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEH-LCYLVVD-ETDRLLREAYQAW 172
P L +LQ + V++ T ++D + EH + +++D DR W
Sbjct: 355 PGR-LNDLQMNNFVNLRSITY-LVLDEADKMLDLGFEHQIMKILLDVRPDRQTIMTSATW 412
Query: 173 LPTVLQLTRS 182
T+ QL S
Sbjct: 413 PDTIRQLAHS 422
Score = 38 (18.4 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 208 CGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238
C E F PYP L+K + A Q P +
Sbjct: 223 CKFEDAFG--PYPELMKSIKKAGF-QKPTPI 250
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 194 (73.4 bits), Expect = 4.3e-23, Sum P(3) = 4.3e-23
Identities = 55/198 (27%), Positives = 90/198 (45%)
Query: 212 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 271
R D+ P ++ SAT ++ +LA+ L + + G + +C
Sbjct: 263 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHD 322
Query: 272 KLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 328
K L+ L++ + E K IVF + L + G + I G + Q
Sbjct: 323 VEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIH---GDKSQQE 379
Query: 329 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388
R L F+ GK +L+++D +RG+DVE V V+NYD P + YIHR GRTAR+ + G
Sbjct: 380 RDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTG 439
Query: 389 RCFTLLHKDEVKRFKKLL 406
+T + +K+ L+
Sbjct: 440 TAYTFFTPNNIKQVSDLI 457
Score = 99 (39.9 bits), Expect = 4.3e-23, Sum P(3) = 4.3e-23
Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
+++L+ V+ +ATPGRL+D + + L YLV+DE DR+L ++ + ++
Sbjct: 211 IRDLERGVENCIATPGRLIDFLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269
Query: 181 RSDNE 185
R D +
Sbjct: 270 RPDRQ 274
Score = 89 (36.4 bits), Expect = 4.3e-23, Sum P(3) = 4.3e-23
Identities = 34/100 (34%), Positives = 46/100 (46%)
Query: 9 VQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-----QTLSNRAVRCLRALVVL 63
+Q W + GL D+ + TGSGKTLSY LP + Q R + LV+
Sbjct: 120 IQAQGWPVALS-GL---DMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI-CLVLA 174
Query: 64 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
PTR+LA QV+ V A A L G + +I +L
Sbjct: 175 PTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDL 214
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 172 (65.6 bits), Expect = 4.5e-23, Sum P(3) = 4.5e-23
Identities = 48/180 (26%), Positives = 83/180 (46%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQ 283
++ +AT ++ +LA ++ P+ +T G+ +R+ + K L+ LL+
Sbjct: 332 LMFTATWPKEVRELANNFMNSPVKVTVGDRDELSANKRITQVVEVINKFDKEKKLIQLLR 391
Query: 284 SLG-----EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 338
+ K ++F + R+ L R + G Q R+ L AF+
Sbjct: 392 KYNANESSDNKILIFALYKKEASRIENFLKRN---RFSVAAIHGDLSQQQRTAALSAFKS 448
Query: 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398
G+ +L+++D RG+D+ V V+N P I+ Y+HR GRT RAG G TL +DE
Sbjct: 449 GQSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRIGRTGRAGAKGTAHTLFTEDE 508
Score = 111 (44.1 bits), Expect = 4.5e-23, Sum P(3) = 4.5e-23
Identities = 25/70 (35%), Positives = 48/70 (68%)
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
+D ++++++A +++VATPGRL+D IN L + YLV+DE DR+L + ++ + T++
Sbjct: 264 DDQIRKIKTA-NVVVATPGRLVDLIN-DGAINLGKVNYLVLDEADRMLEKGFEEDIKTII 321
Query: 178 QLTRSDNENR 187
T S++E +
Sbjct: 322 SNT-SNSERQ 330
Score = 100 (40.3 bits), Expect = 4.5e-23, Sum P(3) = 4.5e-23
Identities = 28/98 (28%), Positives = 47/98 (47%)
Query: 8 PVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPT 65
P+Q W P L +D+ + TGSGKT ++ +P + + + L L + PT
Sbjct: 178 PIQSVSW-----PFLLSGKDVIGVAETGSGKTFAFGVPAINNIITTGNTKTLSVLCISPT 232
Query: 66 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
R+LALQ+ D + G++ G S D+I ++
Sbjct: 233 RELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKI 270
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 197 (74.4 bits), Expect = 5.6e-23, Sum P(3) = 5.6e-23
Identities = 60/195 (30%), Positives = 92/195 (47%)
Query: 220 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYL 278
PR ++ +AT ++ K+A L +P+ + G + + Y + K L
Sbjct: 611 PRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRL 670
Query: 279 VALLQSLGE-EKCIVFTSSVESTHRLCTLL-----NHFGELRIKIKEYSGLQRQSVRSKT 332
+L+S K I+F S T RLC L HFG + I G + Q R
Sbjct: 671 EQILRSQERGSKVIIFCS----TKRLCDHLARSVGRHFGAVVIH-----GDKTQGERDWV 721
Query: 333 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 392
L FR GK VL+++D RG+D++ + V+NYD P ++ Y+HR GRT RAG G FT
Sbjct: 722 LNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFT 781
Query: 393 LLHKDEVKRFKKLLQ 407
+ + K L++
Sbjct: 782 FFTEQDWKYAPDLIK 796
Score = 102 (41.0 bits), Expect = 5.6e-23, Sum P(3) = 5.6e-23
Identities = 29/104 (27%), Positives = 50/104 (48%)
Query: 3 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP---IVQTLSNRAVRCLRA 59
+S+ FP + +T L RD+ + TGSGKTL Y +P +++ N +
Sbjct: 451 LSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTV 510
Query: 60 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
L++ PTR+LA Q++D + +S G + ++ EL
Sbjct: 511 LILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKEL 554
Score = 92 (37.4 bits), Expect = 5.6e-23, Sum P(3) = 5.6e-23
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
L+EL+ DI+VATPGRL D I + + + LV+DE DR+L ++
Sbjct: 551 LKELERGADIVVATPGRLND-ILEMKMIDFQQVSLLVLDEADRMLDMGFE 599
>WB|WBGene00000479 [details] [associations]
symbol:cgh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0008219 "cell death"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0010467 "gene expression" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0017148 "negative regulation of translation"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 195 (73.7 bits), Expect = 5.8e-23, Sum P(2) = 5.8e-23
Identities = 56/191 (29%), Positives = 90/191 (47%)
Query: 218 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 277
P R V M+ SAT Q +H P + E L + Y + K K
Sbjct: 214 PKERQV-MLYSATFPNTVTSFMQKHMHKPYEINLMEELTLLG--VTQYYAFVQEKQKVHC 270
Query: 278 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 337
L L + L + I+F +S + L + G I +S + Q+ R++ FR
Sbjct: 271 LNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYI--HSKMA-QNHRNRVFHDFR 327
Query: 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 397
+G + LV SD +TRG+D++ VN V+N+D P +TY+HR GR+ R G LG L+ +
Sbjct: 328 QGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYE 387
Query: 398 EVKRFKKLLQK 408
+ +++ Q+
Sbjct: 388 DRHTLRRIEQE 398
Score = 140 (54.3 bits), Expect = 5.8e-23, Sum P(2) = 5.8e-23
Identities = 26/91 (28%), Positives = 55/91 (60%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ + +IG L +D+ + G+GKT +Y +P+++ + A++ ++A+V++PTR+LALQ
Sbjct: 69 IQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKIQP-ALKAIQAMVIVPTRELALQT 127
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
+ ++ + L V + G + + D+I L
Sbjct: 128 SQICVELSKHIQLKVMVTTGGTDLRDDIMRL 158
Score = 107 (42.7 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 29/98 (29%), Positives = 51/98 (52%)
Query: 89 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 148
LA+ S I E+S+ I+ + D D + L V +++ATPGR++D + +G
Sbjct: 123 LALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLME--KGV 180
Query: 149 T-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
+EH LV+DE D+LL + +Q L ++ + +
Sbjct: 181 AKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPKERQ 218
>UNIPROTKB|Q95YF3 [details] [associations]
symbol:cgh-1 "ATP-dependent RNA helicase cgh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 195 (73.7 bits), Expect = 5.8e-23, Sum P(2) = 5.8e-23
Identities = 56/191 (29%), Positives = 90/191 (47%)
Query: 218 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 277
P R V M+ SAT Q +H P + E L + Y + K K
Sbjct: 214 PKERQV-MLYSATFPNTVTSFMQKHMHKPYEINLMEELTLLG--VTQYYAFVQEKQKVHC 270
Query: 278 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 337
L L + L + I+F +S + L + G I +S + Q+ R++ FR
Sbjct: 271 LNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYI--HSKMA-QNHRNRVFHDFR 327
Query: 338 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 397
+G + LV SD +TRG+D++ VN V+N+D P +TY+HR GR+ R G LG L+ +
Sbjct: 328 QGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYE 387
Query: 398 EVKRFKKLLQK 408
+ +++ Q+
Sbjct: 388 DRHTLRRIEQE 398
Score = 140 (54.3 bits), Expect = 5.8e-23, Sum P(2) = 5.8e-23
Identities = 26/91 (28%), Positives = 55/91 (60%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ + +IG L +D+ + G+GKT +Y +P+++ + A++ ++A+V++PTR+LALQ
Sbjct: 69 IQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKIQP-ALKAIQAMVIVPTRELALQT 127
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
+ ++ + L V + G + + D+I L
Sbjct: 128 SQICVELSKHIQLKVMVTTGGTDLRDDIMRL 158
Score = 107 (42.7 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 29/98 (29%), Positives = 51/98 (52%)
Query: 89 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 148
LA+ S I E+S+ I+ + D D + L V +++ATPGR++D + +G
Sbjct: 123 LALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLME--KGV 180
Query: 149 T-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
+EH LV+DE D+LL + +Q L ++ + +
Sbjct: 181 AKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPKERQ 218
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 173 (66.0 bits), Expect = 7.4e-23, Sum P(3) = 7.4e-23
Identities = 54/204 (26%), Positives = 94/204 (46%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQ 283
++ SAT + +A+ +++P+ + T K Y+L + S+++ L L+ L
Sbjct: 179 LLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEH 238
Query: 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
E +VF ++ T ++ L G + G Q R +TL F V
Sbjct: 239 K--PESAVVFCNTKRETQKVADELEGLG---FSVLALHGDLEQRDRDETLLQFANKSACV 293
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 403
LV++D RG+D++ ++ V NY + +IHR GRT RAG G +T + + +
Sbjct: 294 LVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIA 353
Query: 404 KLLQKADNDSCPIHSIPS-SLIES 426
L + D + S+PS SL+ S
Sbjct: 354 LLEEYLDREITS-ESLPSLSLLGS 376
Score = 112 (44.5 bits), Expect = 7.4e-23, Sum P(3) = 7.4e-23
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 104 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 163
+K L G+ P+ + L+ I+V TPGR++DH++ R L +L LV+DE DR
Sbjct: 99 VKVLTLCGGVPMGPQ--IGSLEHGAHIIVGTPGRIVDHLDRNR-LDLSNLNMLVLDEADR 155
Query: 164 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 202
+L +Q L +++ + + + A TF P S+
Sbjct: 156 MLEMGFQPQLDAIIEQSPRERQTLLFSA-TF-PEQIQSI 192
Score = 91 (37.1 bits), Expect = 7.4e-23, Sum P(3) = 7.4e-23
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MG + + P+Q +++ L D+ TGSGKT ++ L ++ L + R ++ L
Sbjct: 19 MGYNEMTPIQA----QSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFR-IQTL 73
Query: 61 VVLPTRDLALQVKDVFAAIAPAV 83
V+ PTR+LA QV +A +
Sbjct: 74 VLCPTRELADQVAQEIRTLARGI 96
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 173 (66.0 bits), Expect = 7.4e-23, Sum P(3) = 7.4e-23
Identities = 54/204 (26%), Positives = 94/204 (46%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQ 283
++ SAT + +A+ +++P+ + T K Y+L + S+++ L L+ L
Sbjct: 179 LLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEH 238
Query: 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
E +VF ++ T ++ L G + G Q R +TL F V
Sbjct: 239 K--PESAVVFCNTKRETQKVADELEGLG---FSVLALHGDLEQRDRDETLLQFANKSACV 293
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 403
LV++D RG+D++ ++ V NY + +IHR GRT RAG G +T + + +
Sbjct: 294 LVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIA 353
Query: 404 KLLQKADNDSCPIHSIPS-SLIES 426
L + D + S+PS SL+ S
Sbjct: 354 LLEEYLDREITS-ESLPSLSLLGS 376
Score = 112 (44.5 bits), Expect = 7.4e-23, Sum P(3) = 7.4e-23
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 104 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 163
+K L G+ P+ + L+ I+V TPGR++DH++ R L +L LV+DE DR
Sbjct: 99 VKVLTLCGGVPMGPQ--IGSLEHGAHIIVGTPGRIVDHLDRNR-LDLSNLNMLVLDEADR 155
Query: 164 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 202
+L +Q L +++ + + + A TF P S+
Sbjct: 156 MLEMGFQPQLDAIIEQSPRERQTLLFSA-TF-PEQIQSI 192
Score = 91 (37.1 bits), Expect = 7.4e-23, Sum P(3) = 7.4e-23
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 60
MG + + P+Q +++ L D+ TGSGKT ++ L ++ L + R ++ L
Sbjct: 19 MGYNEMTPIQA----QSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFR-IQTL 73
Query: 61 VVLPTRDLALQVKDVFAAIAPAV 83
V+ PTR+LA QV +A +
Sbjct: 74 VLCPTRELADQVAQEIRTLARGI 96
>UNIPROTKB|F8WAJ0 [details] [associations]
symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL354735 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AL160165 HGNC:HGNC:16715
IPI:IPI01010837 ProteinModelPortal:F8WAJ0 SMR:F8WAJ0
Ensembl:ENST00000438527 ArrayExpress:F8WAJ0 Bgee:F8WAJ0
Uniprot:F8WAJ0
Length = 722
Score = 289 (106.8 bits), Expect = 7.6e-23, P = 7.6e-23
Identities = 123/427 (28%), Positives = 190/427 (44%)
Query: 12 AVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-----ALVVLPT 65
+V +++I P L E RD + S TGSGKTL+Y +P+VQ+L + R ALV++PT
Sbjct: 127 SVQKQSI-PVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPT 185
Query: 66 RDLALQVKD-VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 124
R+LALQ D V + P + G+ +G KR +A L
Sbjct: 186 RELALQSFDTVQKLLKPFTWIVPGVLMGGE----------KRKSEKA-----------RL 224
Query: 125 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
+ ++IL++TPGRL+DHI +T+ L +LV DE DR+L ++ + +L ++
Sbjct: 225 RKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAEC 284
Query: 185 ENRFSDA-STFLPSAFGSLKTIR-RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD 242
+ R + S L L I V DK + +L + P +LD
Sbjct: 285 QKRQNVLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLD 344
Query: 243 LHH-PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST- 300
P L T +P +L +L+C + +++ + ++K +VF SS E
Sbjct: 345 SFAIPESLKQHVT--VVPSKL---RLVCLAA----FILQKCKFEEDQKMVVFFSSCELVE 395
Query: 301 -HR---LCTLLNHFG----------ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 346
H L TLL+ G +R+K G Q R+ + F + VL+
Sbjct: 396 FHYSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLC 455
Query: 347 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 406
+D RG+D+ V +V Y+ P+ YIHR GRTAR G G +L E + L
Sbjct: 456 TDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLA 515
Query: 407 QKADNDS 413
N S
Sbjct: 516 SHKINVS 522
>TAIR|locus:2088237 [details] [associations]
symbol:EIF4A1 "eukaryotic translation initiation factor
4A1" species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0016020 "membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0009651 "response to salt stress" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0009506 GO:GO:0005524
GO:GO:0005618 GO:GO:0046686 EMBL:CP002686 GO:GO:0005730
GO:GO:0016020 GO:GO:0048046 GO:GO:0006413 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OMA:SKRERIM
IPI:IPI00657454 RefSeq:NP_001030693.1 UniGene:At.23558
UniGene:At.28184 ProteinModelPortal:F4JEL4 SMR:F4JEL4 PRIDE:F4JEL4
EnsemblPlants:AT3G13920.2 GeneID:820605 KEGG:ath:AT3G13920
Uniprot:F4JEL4
Length = 415
Score = 173 (66.0 bits), Expect = 8.1e-23, Sum P(3) = 8.1e-23
Identities = 48/196 (24%), Positives = 94/196 (47%)
Query: 210 VERGFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
+ RGFKD+ Y P++ V SAT+ + ++ + + P+ + L
Sbjct: 194 LSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIK 253
Query: 263 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 322
+ Y + + + K L L ++L + ++F V + ++ L + + G
Sbjct: 254 QFYVNVEKEEWKLETLCDLYETLAITQSVIF---VNTRRKVDWLTDKMRSRDHTVSATHG 310
Query: 323 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 382
Q+ R ++ FR G +VL+++D + RG+DV+ V+ V+N+D P + Y+HR GR+
Sbjct: 311 DMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSG 370
Query: 383 RAGQLGRCFTLLHKDE 398
R G+ G + +D+
Sbjct: 371 RFGRKGVAINFVTRDD 386
Score = 122 (48.0 bits), Expect = 8.1e-23, Sum P(3) = 8.1e-23
Identities = 28/88 (31%), Positives = 51/88 (57%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ Q I P D+ + +G+GKT ++ ++Q L ++C +ALV+ PTR+LA Q
Sbjct: 64 AIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQC-QALVLAPTRELAQQ 122
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADE 99
++ V A+ +G+ V VG +S+ ++
Sbjct: 123 IEKVMRALGDYLGVKVHACVGGTSVRED 150
Score = 78 (32.5 bits), Expect = 8.1e-23, Sum P(3) = 8.1e-23
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179
LQ+ V ++V TPGR+ D + + +++ V+DE D +L ++ + + QL
Sbjct: 154 LQAGVHVVVGTPGRVFDMLKR-QSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQL 208
Score = 37 (18.1 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 323 LQRQSVRSKTLKAF 336
L+RQS+R+ +K F
Sbjct: 172 LKRQSLRADNIKMF 185
>ZFIN|ZDB-GENE-071022-2 [details] [associations]
symbol:ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
10" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-071022-2 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 EMBL:CR450711 IPI:IPI00898518
Ensembl:ENSDART00000125785 ArrayExpress:F1QMM9 Bgee:F1QMM9
Uniprot:F1QMM9
Length = 875
Score = 199 (75.1 bits), Expect = 8.1e-23, Sum P(2) = 8.1e-23
Identities = 63/198 (31%), Positives = 92/198 (46%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 283
++ SAT T+ LA+L L P ++ E ++ P LE ++CE K L + L+
Sbjct: 251 LLFSATQTRSVKDLARLSLKDPEYVWVHEQAKFSTPATLEQNYVVCELHQKVNMLYSFLR 310
Query: 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKI 341
S ++K IVF + + L + F LR I + G Q+Q R + F
Sbjct: 311 SHLQKKIIVFFACCKEVQYLFRI---FCRLRPGISVLALHGKQQQMKRVEVYNDFVRKTS 367
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
VL ++D RG+D VN V+ +D P TYIHR GRTAR + G +L E K
Sbjct: 368 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEKG 427
Query: 402 FKKLLQKADNDSCPIHSI 419
LQ+ PI+ I
Sbjct: 428 MISQLQEK---KVPINKI 442
Score = 145 (56.1 bits), Expect = 8.1e-23, Sum P(2) = 8.1e-23
Identities = 41/115 (35%), Positives = 63/115 (54%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLRALVVLPTRDLA 69
+ ++TIG L RD+ + TGSGKTL++ +P+++ L A+ L AL++ PTR+LA
Sbjct: 96 IQRQTIGFALQGRDVLGAAKTGSGKTLAFLIPVLECLYREQWTAMDGLGALIISPTRELA 155
Query: 70 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 124
Q +V + S GL +G + DE SE I R + IC P +LQ +
Sbjct: 156 YQTFEVLRKVGKNHEFSAGLVIGGKDLKDE-SEKIHRTNII--IC-TPGRLLQHM 206
Score = 106 (42.4 bits), Expect = 9.5e-19, Sum P(2) = 9.5e-19
Identities = 28/92 (30%), Positives = 46/92 (50%)
Query: 105 KRPKLEAGICYDPEDVLQELQSA--VDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 162
K + AG+ +D+ E + +I++ TPGRL+ H++ T F L LV+DE D
Sbjct: 167 KNHEFSAGLVIGGKDLKDESEKIHRTNIIICTPGRLLQHMDETATFHASDLHMLVLDEAD 226
Query: 163 RLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 193
R+L + L +++ L +S FS T
Sbjct: 227 RILDMGFADTLNAIVENLPKSRQTLLFSATQT 258
Score = 48 (22.0 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 27/112 (24%), Positives = 49/112 (43%)
Query: 316 KIKEYSGLQRQSVRSKTLKAFRE-GKI--------QVLV-----SSDAMTRGMDVEGVNN 361
K K+ +Q+++++ T K F E GK+ + +V D MT G++VE
Sbjct: 667 KFKDAKKIQKRNLKVNTKKVFTEDGKVVQQWPPLQRTVVPDEEDDDDVMT-GINVEAAKE 725
Query: 362 VVNYDKPAYIKT-YIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND 412
+ + A+ K Y + R +L ++ K+ K+ +KAD D
Sbjct: 726 RLRREDQAFDKMEYRRKIKEKHREKRLKE--KAARREASKQHKEEKRKADGD 775
Score = 40 (19.1 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 396 KDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPV 430
+DE++ F LQ+ S P S +SL+P+
Sbjct: 538 EDELQSFTAQLQQQKTKSEPSQSEEDKDQDSLKPL 572
>GENEDB_PFALCIPARUM|PFL2475w [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 288 (106.4 bits), Expect = 9.8e-23, P = 9.8e-23
Identities = 117/420 (27%), Positives = 202/420 (48%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ ++ I L + + NS TGSGKTL++ LPI++ R L+++ + R+ +
Sbjct: 113 IQRDVIPLALEGKSILANSETGSGKTLAFVLPILE-------RLLQSVNIKMRRN---NM 162
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIA--DEISELIKRPKLEAGICYDPEDVLQ---ELQSA 127
K + I A+ L L + S+ D I L K + + D+ Q E +
Sbjct: 163 KGSYN-ITKALIL---LPTRELSLQCYDVIRSLTKYVTITYSLFCGGIDIKQQEYEFKKR 218
Query: 128 VDILVATPGRLMDHI-NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
DI V TPGR++D + N++ F + +L +V DE D+LL ++ +L + + +
Sbjct: 219 NDIFVCTPGRILDLLLNSSSDF-INYLEIVVFDEADKLLELGFKEECLKILDVCKFKKQI 277
Query: 187 RFSDA---STFLPSAFGSLKTIRRCGVERGFK-DKPYPRLVKMVLSATLT------QDPN 236
F A S A SLK ++ G DK K +A T D N
Sbjct: 278 LFFSATLTSDIKQLANFSLKN--PVFIQSGMSFDKNVDG--KNTYNAYNTCNTYNDNDNN 333
Query: 237 KLAQLDLHHPLFLT-TGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
+ ++ FL + + +K+ E L + + I + K + L+ L ++ + CI+F
Sbjct: 334 NIVVNNIISNSFLKISNKASFKISENLKQEFVNIIQEKYRKASLLYLCNNIYKNHCIIFF 393
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ TH L LL F L ++ E G Q R +++ F++ ++ L++++ +RG+
Sbjct: 394 KTKRETH-LMYLL--FDLLNLRCAELHGSMSQKKRIESIMKFKKAEVDFLLTTELASRGI 450
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKD--EVKRFKKLLQKADN 411
D++ V V+NY+ P+ + Y+HR GRTAR G+ G TL L K+ EVK+ K L+K+ N
Sbjct: 451 DIDHVLYVINYNVPSNVIKYVHRIGRTARIGKEGIASTLYLQKEKIEVKKIVKGLKKSKN 510
>UNIPROTKB|Q8I4R9 [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 288 (106.4 bits), Expect = 9.8e-23, P = 9.8e-23
Identities = 117/420 (27%), Positives = 202/420 (48%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72
+ ++ I L + + NS TGSGKTL++ LPI++ R L+++ + R+ +
Sbjct: 113 IQRDVIPLALEGKSILANSETGSGKTLAFVLPILE-------RLLQSVNIKMRRN---NM 162
Query: 73 KDVFAAIAPAVGLSVGLAVGQSSIA--DEISELIKRPKLEAGICYDPEDVLQ---ELQSA 127
K + I A+ L L + S+ D I L K + + D+ Q E +
Sbjct: 163 KGSYN-ITKALIL---LPTRELSLQCYDVIRSLTKYVTITYSLFCGGIDIKQQEYEFKKR 218
Query: 128 VDILVATPGRLMDHI-NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 186
DI V TPGR++D + N++ F + +L +V DE D+LL ++ +L + + +
Sbjct: 219 NDIFVCTPGRILDLLLNSSSDF-INYLEIVVFDEADKLLELGFKEECLKILDVCKFKKQI 277
Query: 187 RFSDA---STFLPSAFGSLKTIRRCGVERGFK-DKPYPRLVKMVLSATLT------QDPN 236
F A S A SLK ++ G DK K +A T D N
Sbjct: 278 LFFSATLTSDIKQLANFSLKN--PVFIQSGMSFDKNVDG--KNTYNAYNTCNTYNDNDNN 333
Query: 237 KLAQLDLHHPLFLT-TGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFT 294
+ ++ FL + + +K+ E L + + I + K + L+ L ++ + CI+F
Sbjct: 334 NIVVNNIISNSFLKISNKASFKISENLKQEFVNIIQEKYRKASLLYLCNNIYKNHCIIFF 393
Query: 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 354
+ TH L LL F L ++ E G Q R +++ F++ ++ L++++ +RG+
Sbjct: 394 KTKRETH-LMYLL--FDLLNLRCAELHGSMSQKKRIESIMKFKKAEVDFLLTTELASRGI 450
Query: 355 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL-LHKD--EVKRFKKLLQKADN 411
D++ V V+NY+ P+ + Y+HR GRTAR G+ G TL L K+ EVK+ K L+K+ N
Sbjct: 451 DIDHVLYVINYNVPSNVIKYVHRIGRTARIGKEGIASTLYLQKEKIEVKKIVKGLKKSKN 510
>FB|FBgn0027602 [details] [associations]
symbol:CG8611 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806
GeneTree:ENSGT00550000075041 EMBL:AF145609 RefSeq:NP_573214.1
RefSeq:NP_788922.1 UniGene:Dm.3172 ProteinModelPortal:Q86B47
SMR:Q86B47 IntAct:Q86B47 MINT:MINT-776497 PaxDb:Q86B47 PRIDE:Q86B47
EnsemblMetazoa:FBtr0074440 GeneID:32725 KEGG:dme:Dmel_CG8611
UCSC:CG8611-RB FlyBase:FBgn0027602 InParanoid:Q86B47 OMA:YTERDPE
OrthoDB:EOG47SQVT PhylomeDB:Q86B47 GenomeRNAi:32725 NextBio:780053
Bgee:Q86B47 Uniprot:Q86B47
Length = 975
Score = 167 (63.8 bits), Expect = 1.0e-22, Sum P(3) = 1.0e-22
Identities = 65/189 (34%), Positives = 92/189 (48%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
+V Q+TI L +D+ + S TGSGKTL+YALP+V+ L + R R VL AL
Sbjct: 353 SVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVL-----AL- 406
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK-LEAGICYDPEDVLQE---LQSA 127
I P L V Q+ + I +L+K + G E E L+
Sbjct: 407 ------VIVPTREL-----VMQTY--ELIQKLVKPYTWIVPGSLLGGESRKSEKARLRKG 453
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 187
++IL+ TPGRL+DH+ T F L L +L++DE DRLL Y+ V QL + ++ R
Sbjct: 454 INILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYER---DVKQLVEAIDKQR 510
Query: 188 FSDASTFLP 196
LP
Sbjct: 511 AECEDKELP 519
Score = 140 (54.3 bits), Expect = 1.0e-22, Sum P(3) = 1.0e-22
Identities = 32/87 (36%), Positives = 47/87 (54%)
Query: 322 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 381
G Q+ R + FR+ VL+++D + RG+DV + VV Y P ++HR GRT
Sbjct: 686 GSMTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRT 745
Query: 382 ARAGQLGRCFTLLHKDEVKRFKKLLQK 408
ARAG+ GR L E + F + L+K
Sbjct: 746 ARAGRKGRAVLFLTPSEAQ-FVRHLEK 771
Score = 83 (34.3 bits), Expect = 1.0e-22, Sum P(3) = 1.0e-22
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 215 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 253
+DK P+L +M+LSATLT +LA L L +PL++ +
Sbjct: 514 EDKELPQLQRMLLSATLTSQVQQLAGLTLKNPLYIDNSD 552
Score = 43 (20.2 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 200 GSLKTIRRCGVERGFKD 216
GS+ R GV RGF+D
Sbjct: 686 GSMTQTERQGVFRGFRD 702
>CGD|CAL0003050 [details] [associations]
symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
Uniprot:Q5AK59
Length = 565
Score = 209 (78.6 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 61/188 (32%), Positives = 94/188 (50%)
Query: 225 MVLSATLTQDPNKLAQLDLHH-PLFLTT-GETRYKLPERLESYKLICESKLKPLYLVALL 282
M+ SAT T LA++ L PL++ E + LE ++C+S + L L + L
Sbjct: 290 MLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFL 349
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+ ++K IVF SS S LLN+ + + + + G Q+Q R+ T F K
Sbjct: 350 KRNVKKKIIVFLSSCNSVKFYSELLNY---IDLPVLDLHGKQKQQKRTNTFFEFCNAKQG 406
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ-LGRCFTLLHKDEVKR 401
+LV +D RG+D+ V+ +V +D P + YIHR GRTAR Q G+ L E+
Sbjct: 407 ILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELG- 465
Query: 402 FKKLLQKA 409
F + L+ A
Sbjct: 466 FLRYLKAA 473
Score = 127 (49.8 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 40/118 (33%), Positives = 61/118 (51%)
Query: 79 IAPAVGLSVGLAVGQSSIADEI----SELIKRPKLEAGICYDPEDVLQE---LQSAVDIL 131
I P G +V + +A +I EL++ GI D QE L V++L
Sbjct: 175 IKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAKGVNLL 234
Query: 132 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 189
VATPGRL+DH+ T+ F +L LV+DE DR+L ++ + ++++ NENR S
Sbjct: 235 VATPGRLLDHLKNTQ-FVFSNLKALVIDEADRILEIGFEDEMKQIIKVL--PNENRQS 289
Score = 119 (46.9 bits), Expect = 7.0e-22, Sum P(2) = 7.0e-22
Identities = 32/108 (29%), Positives = 57/108 (52%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA- 59
MG + + VQ +TI P L RD+ + TGSGKTL++ +P ++ L + ++
Sbjct: 126 MGFTKMTKVQA----KTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLYSLKIKPRNGT 181
Query: 60 --LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 105
+++ PTR+LALQ+ V + + G+ +G + E ++L K
Sbjct: 182 AVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAK 229
>UNIPROTKB|Q5AK59 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase HAS1"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IGI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
KEGG:cal:CaO19.3962 Uniprot:Q5AK59
Length = 565
Score = 209 (78.6 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 61/188 (32%), Positives = 94/188 (50%)
Query: 225 MVLSATLTQDPNKLAQLDLHH-PLFLTT-GETRYKLPERLESYKLICESKLKPLYLVALL 282
M+ SAT T LA++ L PL++ E + LE ++C+S + L L + L
Sbjct: 290 MLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFL 349
Query: 283 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342
+ ++K IVF SS S LLN+ + + + + G Q+Q R+ T F K
Sbjct: 350 KRNVKKKIIVFLSSCNSVKFYSELLNY---IDLPVLDLHGKQKQQKRTNTFFEFCNAKQG 406
Query: 343 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ-LGRCFTLLHKDEVKR 401
+LV +D RG+D+ V+ +V +D P + YIHR GRTAR Q G+ L E+
Sbjct: 407 ILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELG- 465
Query: 402 FKKLLQKA 409
F + L+ A
Sbjct: 466 FLRYLKAA 473
Score = 127 (49.8 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 40/118 (33%), Positives = 61/118 (51%)
Query: 79 IAPAVGLSVGLAVGQSSIADEI----SELIKRPKLEAGICYDPEDVLQE---LQSAVDIL 131
I P G +V + +A +I EL++ GI D QE L V++L
Sbjct: 175 IKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAKGVNLL 234
Query: 132 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 189
VATPGRL+DH+ T+ F +L LV+DE DR+L ++ + ++++ NENR S
Sbjct: 235 VATPGRLLDHLKNTQ-FVFSNLKALVIDEADRILEIGFEDEMKQIIKVL--PNENRQS 289
Score = 119 (46.9 bits), Expect = 7.0e-22, Sum P(2) = 7.0e-22
Identities = 32/108 (29%), Positives = 57/108 (52%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA- 59
MG + + VQ +TI P L RD+ + TGSGKTL++ +P ++ L + ++
Sbjct: 126 MGFTKMTKVQA----KTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLYSLKIKPRNGT 181
Query: 60 --LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 105
+++ PTR+LALQ+ V + + G+ +G + E ++L K
Sbjct: 182 AVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAK 229
>UNIPROTKB|Q9H8H2 [details] [associations]
symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL354735 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14806
EMBL:AF427339 EMBL:AF335567 EMBL:AF335568 EMBL:AF335569
EMBL:AK023695 EMBL:AK027002 EMBL:AK027484 EMBL:AL160165
EMBL:BC012726 IPI:IPI00043990 IPI:IPI00291296 IPI:IPI00552374
IPI:IPI00552716 RefSeq:NP_073616.6 RefSeq:NP_619526.1
UniGene:Hs.660767 ProteinModelPortal:Q9H8H2 SMR:Q9H8H2
IntAct:Q9H8H2 PhosphoSite:Q9H8H2 DMDM:71153334 SWISS-2DPAGE:Q9H8H2
PaxDb:Q9H8H2 PRIDE:Q9H8H2 DNASU:64794 Ensembl:ENST00000310532
Ensembl:ENST00000372153 Ensembl:ENST00000372155
Ensembl:ENST00000372159 GeneID:64794 KEGG:hsa:64794 UCSC:uc004cbq.1
UCSC:uc004cbs.2 UCSC:uc010mzu.1 CTD:64794 GeneCards:GC09M135468
HGNC:HGNC:16715 HPA:HPA020891 neXtProt:NX_Q9H8H2 PharmGKB:PA27218
HOVERGEN:HBG103793 InParanoid:Q9H8H2 OMA:ARIGCHG OrthoDB:EOG42V8FK
PhylomeDB:Q9H8H2 GenomeRNAi:64794 NextBio:66862 ArrayExpress:Q9H8H2
Bgee:Q9H8H2 CleanEx:HS_DDX31 Genevestigator:Q9H8H2
GermOnline:ENSG00000125485 Uniprot:Q9H8H2
Length = 851
Score = 289 (106.8 bits), Expect = 1.1e-22, P = 1.1e-22
Identities = 123/427 (28%), Positives = 190/427 (44%)
Query: 12 AVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-----ALVVLPT 65
+V +++I P L E RD + S TGSGKTL+Y +P+VQ+L + R ALV++PT
Sbjct: 256 SVQKQSI-PVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPT 314
Query: 66 RDLALQVKD-VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 124
R+LALQ D V + P + G+ +G KR +A L
Sbjct: 315 RELALQSFDTVQKLLKPFTWIVPGVLMGGE----------KRKSEKA-----------RL 353
Query: 125 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 184
+ ++IL++TPGRL+DHI +T+ L +LV DE DR+L ++ + +L ++
Sbjct: 354 RKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAEC 413
Query: 185 ENRFSDA-STFLPSAFGSLKTIR-RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD 242
+ R + S L L I V DK + +L + P +LD
Sbjct: 414 QKRQNVLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLD 473
Query: 243 LHH-PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST- 300
P L T +P +L +L+C + +++ + ++K +VF SS E
Sbjct: 474 SFAIPESLKQHVT--VVPSKL---RLVCLAA----FILQKCKFEEDQKMVVFFSSCELVE 524
Query: 301 -HR---LCTLLNHFG----------ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 346
H L TLL+ G +R+K G Q R+ + F + VL+
Sbjct: 525 FHYSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLC 584
Query: 347 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 406
+D RG+D+ V +V Y+ P+ YIHR GRTAR G G +L E + L
Sbjct: 585 TDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLA 644
Query: 407 QKADNDS 413
N S
Sbjct: 645 SHKINVS 651
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 203 (76.5 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 66/233 (28%), Positives = 112/233 (48%)
Query: 212 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL--HHPLFLTTGETRYKLPERLESYKLIC 269
R D+ P ++ SAT ++ LA+ DL P+ + G ++ +
Sbjct: 282 RKIVDQIRPDRQTLMWSATWPKEVQALAK-DLCKEQPIQVNVGSLTLTACRSIKQEIYLL 340
Query: 270 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 327
E K L +LLQ + ++ IVF + ++ + L G + I G ++Q
Sbjct: 341 EEHEKIGNLKSLLQRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCIH---GDKKQE 397
Query: 328 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 387
R L F+ GK +++++D +RG+D++ V V+N+D P I+ Y+HR GRT RAG
Sbjct: 398 ERRWVLNEFKTGKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSH 457
Query: 388 GRCFTLLHKDEVKRFK---KLLQKADNDSCP-IHSIPSSLIESLR--PVYKSG 434
G FT L D+ + K K+L++++ P + I S+ + R P Y SG
Sbjct: 458 GASFTFLTADKYRLAKDLVKILRESEQPVPPQLEKISYSMGNNQRRNPYYSSG 510
Score = 90 (36.7 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 124 LQSAVDILVATPGRLMDHI--NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 181
L+ V IL+A PGRL+D + N T L + YLV+DE D++L ++ + ++ R
Sbjct: 233 LKQGVHILIACPGRLIDLLEQNVTN---LMRVTYLVLDEADKMLDMGFELQIRKIVDQIR 289
Query: 182 SDNE 185
D +
Sbjct: 290 PDRQ 293
Score = 80 (33.2 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP-IVQTLSNRAVRCLRALVVL--- 63
P+Q+ W + G +D+ + TGSGKTL++ LP V L+ ++ +VL
Sbjct: 138 PIQIQGWPIALS-G---KDMIGKAETGSGKTLAFILPAFVHILAQPNLKYGDGPIVLVLA 193
Query: 64 PTRDLALQVK 73
PTR+LA Q++
Sbjct: 194 PTRELAEQIR 203
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 203 (76.5 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 66/233 (28%), Positives = 112/233 (48%)
Query: 212 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL--HHPLFLTTGETRYKLPERLESYKLIC 269
R D+ P ++ SAT ++ LA+ DL P+ + G ++ +
Sbjct: 282 RKIVDQIRPDRQTLMWSATWPKEVQALAK-DLCKEQPIQVNVGSLTLTACRSIKQEIYLL 340
Query: 270 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 327
E K L +LLQ + ++ IVF + ++ + L G + I G ++Q
Sbjct: 341 EEHEKIGNLKSLLQRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCIH---GDKKQE 397
Query: 328 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 387
R L F+ GK +++++D +RG+D++ V V+N+D P I+ Y+HR GRT RAG
Sbjct: 398 ERRWVLNEFKTGKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSH 457
Query: 388 GRCFTLLHKDEVKRFK---KLLQKADNDSCP-IHSIPSSLIESLR--PVYKSG 434
G FT L D+ + K K+L++++ P + I S+ + R P Y SG
Sbjct: 458 GASFTFLTADKYRLAKDLVKILRESEQPVPPQLEKISYSMGNNQRRNPYYSSG 510
Score = 90 (36.7 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 124 LQSAVDILVATPGRLMDHI--NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 181
L+ V IL+A PGRL+D + N T L + YLV+DE D++L ++ + ++ R
Sbjct: 233 LKQGVHILIACPGRLIDLLEQNVTN---LMRVTYLVLDEADKMLDMGFELQIRKIVDQIR 289
Query: 182 SDNE 185
D +
Sbjct: 290 PDRQ 293
Score = 80 (33.2 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP-IVQTLSNRAVRCLRALVVL--- 63
P+Q+ W + G +D+ + TGSGKTL++ LP V L+ ++ +VL
Sbjct: 138 PIQIQGWPIALS-G---KDMIGKAETGSGKTLAFILPAFVHILAQPNLKYGDGPIVLVLA 193
Query: 64 PTRDLALQVK 73
PTR+LA Q++
Sbjct: 194 PTRELAEQIR 203
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 209 (78.6 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 58/204 (28%), Positives = 105/204 (51%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL---VAL 281
++ SAT + + A+ L P+ ++ G + + +++ K +L +AL
Sbjct: 487 LLFSATFKPNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLTNQLAL 546
Query: 282 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 341
L S G ++F S+ + +L + L FG + G + Q RS+T++ F+EGKI
Sbjct: 547 LLSQGS--VLIFVSTKVAVEQLSSNLTKFG---FQTCTLHGDKNQIERSQTIQTFKEGKI 601
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
+L+++D RG+D+ + NVVNYD I+++ HR GRT RAG G +TL+ ++
Sbjct: 602 NILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDIHF 661
Query: 402 FKKLLQKADNDSCPIHSIPSSLIE 425
L++ ++ S +P LI+
Sbjct: 662 SVDLIKNLESAS---QFVPPELID 682
Score = 111 (44.1 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 30/101 (29%), Positives = 52/101 (51%)
Query: 108 KLEAGICY---DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 164
KL+ + Y + +EL++ +I+VATPGRL+D I + L + YLV+DE D++
Sbjct: 406 KLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLIDMIKL-KATKLNRVSYLVLDEADKM 464
Query: 165 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 205
+ + +++ R D + A TF P+ +TI
Sbjct: 465 FDFGFGPQVLSIVNHVRPDRQTLLFSA-TFKPNVEEFARTI 504
Score = 65 (27.9 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR----ALVVLPTRDL 68
+ ++ I L RDL + TGSGKT ++ P + + ++ AL + PTR+L
Sbjct: 331 IQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYLEKGDGPIALFLAPTREL 390
Query: 69 ALQV 72
A Q+
Sbjct: 391 AHQI 394
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 194 (73.4 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 50/201 (24%), Positives = 97/201 (48%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SAT +LA+ L P+ + G ++ L + K Y+ +
Sbjct: 460 VMTSATWPPGVRRLAKSYLKDPMMVYVGTLDLAAVNTVQQTVLFVQEDEKKDYVFDFIHR 519
Query: 285 LGE-EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 343
+ +K ++F L + L G I ++ G + Q R + L+ F++G++++
Sbjct: 520 MEPLDKVLIFVGKKLKADDLSSDLCLQG---IAVQSLHGDREQCDREEALQDFKDGRVRI 576
Query: 344 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 403
LV++D +RG+DV + +V NYD P ++ Y+HR GRT RAG+ G TL+ +++ +
Sbjct: 577 LVATDLASRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTREDWRVAA 636
Query: 404 KLLQKADNDSCPIHSIPSSLI 424
+L+ + +P L+
Sbjct: 637 ELITILERSG---QDVPEELV 654
Score = 104 (41.7 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 180
++ + S VDI++ATPGRL D + L + YLV+DE DR+L ++ + ++
Sbjct: 395 IKVVTSGVDIVIATPGRLND-LQMNELINLRSITYLVLDEADRMLDMGFEPQIMKIILDI 453
Query: 181 RSDNENRFSDAS 192
R D + + A+
Sbjct: 454 RPDRQTVMTSAT 465
Score = 83 (34.3 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 27/78 (34%), Positives = 41/78 (52%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLR- 58
+G P+Q W + G+ DL + TG+GKTL+Y LP + + + R R
Sbjct: 296 VGFKKPTPIQSQAWPVVLN-GI---DLIGIAQTGTGKTLAYLLPGFIHMDGQPMPRDKRN 351
Query: 59 ---ALVVLPTRDLALQVK 73
LV+ PTR+LALQ++
Sbjct: 352 GPGMLVLTPTRELALQIE 369
>FB|FBgn0037573 [details] [associations]
symbol:eIF4AIII "eIF4AIII" species:7227 "Drosophila
melanogaster" [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0006413 "translational
initiation" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0045451 "pole plasm
oskar mRNA localization" evidence=IGI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0008380 "RNA splicing"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016281
GO:GO:0006974 GO:GO:0003743 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045451 GO:GO:0045495 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 ChiTaRS:EIF4A3
EMBL:AY089635 ProteinModelPortal:Q8SXH3 SMR:Q8SXH3 IntAct:Q8SXH3
STRING:Q8SXH3 PaxDb:Q8SXH3 PRIDE:Q8SXH3 FlyBase:FBgn0037573
InParanoid:Q8SXH3 OrthoDB:EOG4XWDD6 Bgee:Q8SXH3 Uniprot:Q8SXH3
Length = 399
Score = 178 (67.7 bits), Expect = 1.3e-22, Sum P(3) = 1.3e-22
Identities = 55/218 (25%), Positives = 103/218 (47%)
Query: 210 VERGFKDKPY------PRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
+ +GFK++ Y P ++VL SATL + ++ + P+ + L E +
Sbjct: 181 LNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTSKFMTDPIRILVKRDELTL-EGI 239
Query: 263 ESYKLICE-SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 321
+ + + E + K L L +L + ++F ++ ++ L E +
Sbjct: 240 KQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT---KRKVDWLTEKMREANFTVSSMH 296
Query: 322 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 381
G Q R + +K FR G+ +VL+++D RG+DV+ V+ V+NYD P + YIHR GR+
Sbjct: 297 GDMPQKERDEIMKEFRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRS 356
Query: 382 ARAGQLGRCFTLLHKDEVKRFKKLLQ--KADNDSCPIH 417
R G+ G + D+++ + + Q D P++
Sbjct: 357 GRFGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMPVN 394
Score = 127 (49.8 bits), Expect = 1.3e-22, Sum P(3) = 1.3e-22
Identities = 26/92 (28%), Positives = 57/92 (61%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ Q +I P + RD+ + +G+GKT ++++ I+Q+L +R + L + PTR+LA+Q
Sbjct: 51 AIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSLDT-TLRETQVLCLSPTRELAVQ 109
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103
++ V A+ + + + +G +++ ++I +L
Sbjct: 110 IQKVILALGDMMNVQCHVCIGGTNLGEDIRKL 141
Score = 64 (27.6 bits), Expect = 1.3e-22, Sum P(3) = 1.3e-22
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 118 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
ED+ ++L I+ TPGR+ D I R + LV+DE D +L + ++
Sbjct: 136 EDI-RKLDYGQHIVSGTPGRVFDMIKR-RVLRTRAIKMLVLDEADEMLNKGFK 186
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 180 (68.4 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 43/120 (35%), Positives = 61/120 (50%)
Query: 289 KCIVFTSSVESTHRLC-TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 347
K I+F S+ +L L FG I G + Q+ R L FR G+ VLV++
Sbjct: 476 KIIIFCSTKRMCDQLARNLTRTFGAAAIH-----GDKSQAERDDVLNQFRSGRTPVLVAT 530
Query: 348 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407
D RG+DV+ + VVNYD P ++ Y+HR GRT RAG G +T + K L++
Sbjct: 531 DVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIK 590
Score = 110 (43.8 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170
L+E++ VDI+VATPGRL D + R +L + YLV+DE DR+L ++
Sbjct: 345 LKEIERGVDIVVATPGRLNDILEMKR-ISLHQVSYLVLDEADRMLDMGFE 393
Score = 92 (37.4 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP---IVQTLSNRAVRCLR 58
G S+ P+Q W + RD+ + TGSGKTL Y +P +Q + N +
Sbjct: 248 GFSAPSPIQAQSWPIAMQ----NRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPT 303
Query: 59 ALVVLPTRDLALQVK 73
LV+ PTR+LA Q++
Sbjct: 304 ILVLSPTRELATQIQ 318
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 204 (76.9 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 54/175 (30%), Positives = 84/175 (48%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 284
++ SAT+ ++A+ ++ P + +P ++ Y L K K L LL
Sbjct: 179 LLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPN-IQQYYLEVHEKKKFDILTRLLDI 237
Query: 285 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 344
E IVF + L LN G I G Q+ R L+ F+EG I++L
Sbjct: 238 QAPELAIVFGRTKRRVDELAEALNLRGYAAEGIH---GDLSQAKRLSVLRKFKEGAIEIL 294
Query: 345 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
V++D RG+D+ GV +V N+D P ++Y+HR GRT RAG+ G T + E+
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREI 349
Score = 128 (50.1 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 39/114 (34%), Positives = 58/114 (50%)
Query: 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS--NRAVRCLR 58
MG P+Q +TI L +D+ + TG+GKT ++ +PIV+ ++ N AV+
Sbjct: 20 MGFEETTPIQA----KTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKVNVKNSAVQ--- 72
Query: 59 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
ALVV PTR+LA+QV + I + V G I +I L K P + G
Sbjct: 73 ALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHPHVIVG 126
Score = 102 (41.0 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 39/156 (25%), Positives = 73/156 (46%)
Query: 116 DPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLP 174
D E ++ L+ ++V TPGR++DHIN RG LEH+ +V+DE D +L + +
Sbjct: 109 DIERQIRALKKHPHVIVGTPGRIIDHIN--RGTLRLEHVHTVVLDEADEMLNMGFIEDIE 166
Query: 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG-VERGFKDKPYPRLVKMVLSATLTQ 233
+L ++ + A+ P + + + V+ K+ P + + L +
Sbjct: 167 AILSHVPAERQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKK 226
Query: 234 DPNKLAQL-DLHHP-LFLTTGETRYKLPERLESYKL 267
+ L +L D+ P L + G T+ ++ E E+ L
Sbjct: 227 KFDILTRLLDIQAPELAIVFGRTKRRVDELAEALNL 262
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 187 (70.9 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 54/199 (27%), Positives = 90/199 (45%)
Query: 212 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 271
R D+ P ++ SAT ++ +LA+ L + G + +C
Sbjct: 261 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCME 320
Query: 272 KLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 328
K L+ L++ + E K I+F + L + G + I G + Q
Sbjct: 321 SEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH---GDKSQPE 377
Query: 329 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388
R L FR GK +L+++D +RG+DVE V V+NYD P + Y+HR GRTAR+ G
Sbjct: 378 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 437
Query: 389 RCFTLLHKDEVKRFKKLLQ 407
+T +K+ ++L++
Sbjct: 438 TAYTFFTPGNLKQARELIK 456
Score = 111 (44.1 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 28/99 (28%), Positives = 52/99 (52%)
Query: 89 LAVGQSSIADEISEL--IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 146
LA +AD+ + +K + G P+ +++L+ V+I +ATPGRL+D + + +
Sbjct: 177 LAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQ--IRDLERGVEICIATPGRLIDFLESGK 234
Query: 147 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
L YLV+DE DR+L ++ + ++ R D +
Sbjct: 235 T-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 272
Score = 81 (33.6 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDV 75
RD+ + TGSGKTL+Y LP + ++++ LV+ PTR+LA QV+ V
Sbjct: 130 RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQV 184
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 187 (70.9 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 54/199 (27%), Positives = 90/199 (45%)
Query: 212 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 271
R D+ P ++ SAT ++ +LA+ L + G + +C
Sbjct: 261 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCME 320
Query: 272 KLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 328
K L+ L++ + E K I+F + L + G + I G + Q
Sbjct: 321 SEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH---GDKSQPE 377
Query: 329 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388
R L FR GK +L+++D +RG+DVE V V+NYD P + Y+HR GRTAR+ G
Sbjct: 378 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 437
Query: 389 RCFTLLHKDEVKRFKKLLQ 407
+T +K+ ++L++
Sbjct: 438 TAYTFFTPGNLKQARELIK 456
Score = 111 (44.1 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 28/99 (28%), Positives = 52/99 (52%)
Query: 89 LAVGQSSIADEISEL--IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 146
LA +AD+ + +K + G P+ +++L+ V+I +ATPGRL+D + + +
Sbjct: 177 LAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQ--IRDLERGVEICIATPGRLIDFLESGK 234
Query: 147 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
L YLV+DE DR+L ++ + ++ R D +
Sbjct: 235 T-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 272
Score = 81 (33.6 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDV 75
RD+ + TGSGKTL+Y LP + ++++ LV+ PTR+LA QV+ V
Sbjct: 130 RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQV 184
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 187 (70.9 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 54/199 (27%), Positives = 90/199 (45%)
Query: 212 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 271
R D+ P ++ SAT ++ +LA+ L + G + +C
Sbjct: 261 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCME 320
Query: 272 KLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 328
K L+ L++ + E K I+F + L + G + I G + Q
Sbjct: 321 SEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH---GDKSQPE 377
Query: 329 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388
R L FR GK +L+++D +RG+DVE V V+NYD P + Y+HR GRTAR+ G
Sbjct: 378 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 437
Query: 389 RCFTLLHKDEVKRFKKLLQ 407
+T +K+ ++L++
Sbjct: 438 TAYTFFTPGNLKQARELIK 456
Score = 111 (44.1 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 28/99 (28%), Positives = 52/99 (52%)
Query: 89 LAVGQSSIADEISEL--IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 146
LA +AD+ + +K + G P+ +++L+ V+I +ATPGRL+D + + +
Sbjct: 177 LAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQ--IRDLERGVEICIATPGRLIDFLESGK 234
Query: 147 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
L YLV+DE DR+L ++ + ++ R D +
Sbjct: 235 T-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 272
Score = 81 (33.6 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDV 75
RD+ + TGSGKTL+Y LP + ++++ LV+ PTR+LA QV+ V
Sbjct: 130 RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQV 184
>UNIPROTKB|Q8JFP1 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 OMA:TENDARQ EMBL:AF515726
EMBL:AJ720280 IPI:IPI00588868 RefSeq:NP_989880.1 UniGene:Gga.4580
ProteinModelPortal:Q8JFP1 SMR:Q8JFP1 STRING:Q8JFP1 PRIDE:Q8JFP1
Ensembl:ENSGALT00000014135 Ensembl:ENSGALT00000039726 GeneID:395232
KEGG:gga:395232 InParanoid:Q8JFP1 NextBio:20815321
ArrayExpress:Q8JFP1 Uniprot:Q8JFP1
Length = 407
Score = 172 (65.6 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 54/223 (24%), Positives = 105/223 (47%)
Query: 210 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 189 LSRGFKDQIYEIFQKLSTNIQVVLLSATMPMDVLEVTKKFMREPIRILVKKEELTLEGIK 248
Query: 263 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 322
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 249 QFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKM-HARDFTVSALH--G 305
Query: 323 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 382
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 306 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 365
Query: 383 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIE 425
R G+ G + +++ KR + ++ N + + +P ++ +
Sbjct: 366 RFGRKGVAINFVTEED-KRILRDIETFYNTT--VEEMPMNVAD 405
Score = 123 (48.4 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ Q I P + D+ + +G+GKT ++A+ I+Q L ++ +ALV+ PTR+LA Q
Sbjct: 58 AIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEID-LKETQALVLAPTRELAQQ 116
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 112
++ V A+ +G + +G +++ +E+ +L + P + G
Sbjct: 117 IQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVG 158
Score = 75 (31.5 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 121 LQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
+Q+LQ+ A I+V TPGR+ D +N R + + + V+DE D +L ++ + + Q
Sbjct: 145 MQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
>SGD|S000000346 [details] [associations]
symbol:MAK5 "Essential nucleolar protein" species:4932
"Saccharomyces cerevisiae" [GO:0000466 "maturation of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0042273 "ribosomal large subunit biogenesis" evidence=IMP]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000000346 GO:GO:0005524 GO:GO:0005730
EMBL:BK006936 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000463 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000466 KO:K14805
HOGENOM:HOG000290702 GeneTree:ENSGT00550000074847 EMBL:X78937
OrthoDB:EOG44J5S7 EMBL:Z36011 PIR:S46011 RefSeq:NP_009700.1
ProteinModelPortal:P38112 SMR:P38112 DIP:DIP-6337N IntAct:P38112
MINT:MINT-612928 STRING:P38112 PaxDb:P38112 PeptideAtlas:P38112
EnsemblFungi:YBR142W GeneID:852439 KEGG:sce:YBR142W CYGD:YBR142w
OMA:HLPRAAD NextBio:971336 Genevestigator:P38112 GermOnline:YBR142W
Uniprot:P38112
Length = 773
Score = 287 (106.1 bits), Expect = 1.5e-22, P = 1.5e-22
Identities = 110/422 (26%), Positives = 196/422 (46%)
Query: 26 DLCINSPTGSGKTLSYALPIVQTL-SNRAVRCLR--ALVVLPTRDLALQVKDVFAAIAPA 82
D+ + TGSGKTL+Y +PIV+ L SN + + + +L+ PTR+LA QV D I
Sbjct: 210 DVMGKASTGSGKTLAYGIPIVEKLISNFSQKNKKPISLIFTPTRELAHQVTDHLKKICEP 269
Query: 83 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 142
V LA Q SI L G+ + L + ++ I++ATPGR ++ +
Sbjct: 270 V-----LAKSQYSILS----------LTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELL 314
Query: 143 NATRGFT--LEHLCYLVVDETDRLLREA----YQAWLPTVLQLTRSDNENRFSDAS---T 193
+ L++DE DRLL++ ++ + +L R + EN + T
Sbjct: 315 EKDNTLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSSKIWQT 374
Query: 194 FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 253
+ SA S+ + R KD+ + + L+A + +K+ + P+ + T
Sbjct: 375 LIFSATFSIDLFDKLSSSRQVKDRRFKNN-EDELNAVIQHLMSKI-HFN-SKPVIIDTNP 431
Query: 254 TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG-- 311
K+ +++ + C + LY L ++ ++F ++++S +L LN+ G
Sbjct: 432 ES-KVSSQIKESLIECPPLERDLYCYYFL-TMFPGTTLIFCNAIDSVKKLTVYLNNLGIP 489
Query: 312 ELRI--------KIKEYSGLQRQSVRSKTLKAFREGKIQ---VLVSSDAMTRGMDVEGVN 360
+I ++K ++QS + KT+ +Q VL++SD RG+D+ GV
Sbjct: 490 AFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGLDIPGVQ 549
Query: 361 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE----VKRFKKLLQKADNDSCPI 416
+V++Y P YIHR+GRTARAG G + E +++ +K L ++ S +
Sbjct: 550 HVIHYHLPRSTDIYIHRSGRTARAGSEGVSAMICSPQESMGPLRKLRKTLATKNSVSTDL 609
Query: 417 HS 418
+S
Sbjct: 610 NS 611
>UNIPROTKB|Q5T1V6 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
Genevestigator:Q5T1V6 Uniprot:Q5T1V6
Length = 619
Score = 176 (67.0 bits), Expect = 1.6e-22, Sum P(3) = 1.6e-22
Identities = 60/208 (28%), Positives = 101/208 (48%)
Query: 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP-ERLESYKLICE--SKLKPLYLVAL 281
+++SAT+ +LA LH+P+ + TGE LP + L E +K K L+ +
Sbjct: 381 ILVSATIPTSIEQLASQLLHNPVRIITGEKN--LPCANVRQIILWVEDPAKKKKLFEILN 438
Query: 282 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR-IKI-KEYSGLQRQSVRSKTLKAFREG 339
+ L + +VF L + L+ I I E S ++R+++ LK EG
Sbjct: 439 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNI----LKGLLEG 494
Query: 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399
+V+VS+ + RG+D+ V VVN+D P+ + Y+H+ GR R GQ G T ++ +
Sbjct: 495 DYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSK 554
Query: 400 KRFKKLLQKADNDSCPIHSI-PSSLIES 426
+ F + ++ P SI P L+ S
Sbjct: 555 RLFWDIAKRVK----PTGSILPPQLLNS 578
Score = 107 (42.7 bits), Expect = 1.6e-22, Sum P(3) = 1.6e-22
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66
+ V + + I GL RD+ ++ TGSGKT ++ LP++ + + AL++ PTR
Sbjct: 223 YEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFES-KTPSALILTPTR 281
Query: 67 DLALQVK 73
+LA+Q++
Sbjct: 282 ELAIQIE 288
Score = 96 (38.9 bits), Expect = 1.6e-22, Sum P(3) = 1.6e-22
Identities = 37/113 (32%), Positives = 55/113 (48%)
Query: 89 LAVGQSSIADEISELIKRPK---LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 145
LA+ A E+ + R K L G+ P+ L LQ V +++ATPGRL+D I +
Sbjct: 283 LAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQ--LYRLQQHVKVIIATPGRLLDIIKQS 340
Query: 146 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 198
L + +VVDE D +L+ +Q + +L EN +D T L SA
Sbjct: 341 -SVELCGVKIVVVDEADTMLKMGFQQQVLDIL-------ENIPNDCQTILVSA 385
Score = 40 (19.1 bits), Expect = 9.1e-10, Sum P(2) = 9.1e-10
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 185 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK-PYPRLVK 224
+ S++ F PS G L + E+G KD P VK
Sbjct: 53 DRHISESCPF-PSPGGQLAEVHSVSPEQGAKDSHPSEEPVK 92
>MGI|MGI:1277172 [details] [associations]
symbol:Ddx56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1277172 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 CTD:54606 HOVERGEN:HBG051334
OrthoDB:EOG47H5PT EMBL:AK011136 EMBL:AK077514 EMBL:BC018291
IPI:IPI00132957 RefSeq:NP_080814.1 UniGene:Mm.29810
ProteinModelPortal:Q9D0R4 SMR:Q9D0R4 STRING:Q9D0R4
PhosphoSite:Q9D0R4 PaxDb:Q9D0R4 PRIDE:Q9D0R4
Ensembl:ENSMUST00000004507 GeneID:52513 KEGG:mmu:52513
InParanoid:Q9D0R4 ChiTaRS:DDX56 NextBio:309069 Bgee:Q9D0R4
CleanEx:MM_DDX56 Genevestigator:Q9D0R4
GermOnline:ENSMUSG00000004393 Uniprot:Q9D0R4
Length = 546
Score = 145 (56.1 bits), Expect = 1.7e-22, Sum P(3) = 1.7e-22
Identities = 42/142 (29%), Positives = 76/142 (53%)
Query: 220 PRLVK-MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLY 277
PR+ + ++SAT +D L +L LH+P+ L E++ P++L+ ++++CE++ K L
Sbjct: 188 PRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLL 247
Query: 278 LVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 336
L ALL+ SL K ++F +++E +RL L F I +G R + F
Sbjct: 248 LYALLKLSLIRGKALLFVNTLERGYRLRLFLEQFS---IPSCVLNGELPLRSRCHIISQF 304
Query: 337 REGKIQVLVSSDAMTRGMDVEG 358
+G ++++DA G V+G
Sbjct: 305 NQGLYDCVIATDAEILGPQVKG 326
Score = 133 (51.9 bits), Expect = 1.7e-22, Sum P(3) = 1.7e-22
Identities = 50/170 (29%), Positives = 81/170 (47%)
Query: 15 QETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAV------RCLRALVVLPTRD 67
QE P E +DL + TGSGKT +YA+P++Q+L ++ + +R LV++PT++
Sbjct: 34 QEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQSLLHKKATGPVMEQAVRGLVLVPTKE 93
Query: 68 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 127
LA Q + + +A V +A S+ D S+ VL E
Sbjct: 94 LARQAQAMIQQLAAYCARDVRVA-NVSAAEDSASQ---------------RAVLMEKP-- 135
Query: 128 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 177
D++V TP R++ H+ + L LVVDE D L ++ L ++L
Sbjct: 136 -DVVVGTPSRVLSHLQQNTLKLRDSLELLVVDEADLLFSFGFEDELKSLL 184
Score = 102 (41.0 bits), Expect = 1.7e-22, Sum P(3) = 1.7e-22
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 350 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394
+ RG+D V+ V+N+D P + Y+HRAGRTARA G T +
Sbjct: 345 VARGIDFHHVSAVLNFDLPPTAEAYVHRAGRTARANNPGIVLTFV 389
>UNIPROTKB|Q71YU6 [details] [associations]
symbol:LMOf2365_1746 "Helicase domain protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017262
GenomeReviews:AE017262_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:YP_014341.1 ProteinModelPortal:Q71YU6
STRING:Q71YU6 GeneID:2799880 KEGG:lmf:LMOf2365_1746 PATRIC:20324779
HOGENOM:HOG000268811 OMA:MTIATPF ProtClustDB:CLSK564571
Uniprot:Q71YU6
Length = 442
Score = 172 (65.6 bits), Expect = 2.0e-22, Sum P(3) = 2.0e-22
Identities = 56/185 (30%), Positives = 93/185 (50%)
Query: 226 VLSATLTQDPNKL-AQLDLHHPLFLTTGETRYKLPERL---ESYKLICESKLKPLYLVAL 281
++SAT ++P+ AQ + + P+ L E K PE L E + ES+ K L+
Sbjct: 176 LVSATKLENPDMFFAQTE-NTPVML---EVTAK-PEELTNVEHLYMDVESRDKAT-LLRR 229
Query: 282 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 341
+ + + + +VF V+ R+ LL ++K G R+ R K L F++G +
Sbjct: 230 ISHIKDMRGLVF---VKDKPRMEILLEKLHYDKVKAAGIHGEIRKEKRKKYLDDFKKGTL 286
Query: 342 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401
L+ +D RG+D+E + V++YD A K Y HR+GRT R G+ G T + E++
Sbjct: 287 TYLIVTDVAARGLDIEDLPYVIHYDLAASEKEYTHRSGRTGRMGKSGTVITFANPREIRT 346
Query: 402 FKKLL 406
K+ L
Sbjct: 347 LKQYL 351
Score = 129 (50.5 bits), Expect = 2.0e-22, Sum P(3) = 2.0e-22
Identities = 32/101 (31%), Positives = 62/101 (61%)
Query: 9 VQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 68
+Q A++Q I G D+ SPTG+GKT++YALP ++ + A+ + LV+ P+ +L
Sbjct: 25 IQSAMYQP-IKDGA---DVLAVSPTGTGKTVAYALPTLEKIE--AIPKTQWLVLAPSHEL 78
Query: 69 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 109
+Q+ +V + P+ L+V +G +++ +I +L K+P++
Sbjct: 79 VMQITEVIRSWLPSDELTVISLIGGANVKRQIEKLKKKPQI 119
Score = 70 (29.7 bits), Expect = 2.0e-22, Sum P(3) = 2.0e-22
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 121 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQL 179
+++L+ I+VA+PGR ++ I + + + + +DE D+LLR E +++ L V
Sbjct: 110 IEKLKKKPQIIVASPGRALELIKQKK-IKMHEIKTITLDECDQLLRQENFKSTLEIVESA 168
Query: 180 TR 181
R
Sbjct: 169 VR 170
>TAIR|locus:2167903 [details] [associations]
symbol:PRH75 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IEA;IDA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0051604 "protein
maturation" evidence=RCA] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0017151 "DEAD/H-box RNA helicase binding"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005730
GO:GO:0003723 GO:GO:0016070 GO:GO:0017151 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB019235 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 EMBL:X99938 EMBL:AY039576 EMBL:AY056137
EMBL:BT008581 IPI:IPI00520493 RefSeq:NP_201025.1 UniGene:At.22598
ProteinModelPortal:Q39189 SMR:Q39189 IntAct:Q39189 STRING:Q39189
PaxDb:Q39189 PRIDE:Q39189 EnsemblPlants:AT5G62190.1 GeneID:836340
KEGG:ath:AT5G62190 GeneFarm:918 TAIR:At5g62190 InParanoid:Q39189
OMA:QCEPPRE PhylomeDB:Q39189 ProtClustDB:CLSN2687322
Genevestigator:Q39189 GermOnline:AT5G62190 Uniprot:Q39189
Length = 671
Score = 173 (66.0 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 63/205 (30%), Positives = 94/205 (45%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR--- 58
GI +LFP+Q + + + DL + TG GKTL++ LPI+++L N + R
Sbjct: 115 GIEALFPIQASTFDMVLDGA----DLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMG 170
Query: 59 ------ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112
LV+LPTR+LA QV F A ++GLS G S ++ KL+ G
Sbjct: 171 YGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYP------VQEGKLKRG 224
Query: 113 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAW 172
VDI+V TPGR+ DHI + +L + V+DE D +LR +
Sbjct: 225 ---------------VDIVVGTPGRIKDHIER-QNLDFSYLQFRVLDEADEMLRMGFVED 268
Query: 173 LPTVLQLTRSDNENRFSDASTFLPS 197
+ +L + + S LPS
Sbjct: 269 VELILGKVEDSTKVQTLLFSATLPS 293
Score = 166 (63.5 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 40/107 (37%), Positives = 56/107 (52%)
Query: 310 FGELRIKIKEYSGL---QR-------QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359
F E ++++ E SGL R QS R TL FR GK LV+++ RG+D+ V
Sbjct: 356 FAETKVQVSELSGLLDGSRALHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDV 415
Query: 360 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL--HKDEVKRFKK 404
++ + P ++ YIHR+GRT RAG G TL K V R +K
Sbjct: 416 QLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTLYDSRKSSVSRIEK 462
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 187 (70.9 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
Identities = 54/199 (27%), Positives = 90/199 (45%)
Query: 212 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 271
R D+ P ++ SAT ++ +LA+ L + G + +C
Sbjct: 340 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCME 399
Query: 272 KLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 328
K L+ L++ + E K I+F + L + G + I G + Q
Sbjct: 400 SEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH---GDKSQPE 456
Query: 329 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388
R L FR GK +L+++D +RG+DVE V V+NYD P + Y+HR GRTAR+ G
Sbjct: 457 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 516
Query: 389 RCFTLLHKDEVKRFKKLLQ 407
+T +K+ ++L++
Sbjct: 517 TAYTFFTPGNLKQARELIK 535
Score = 111 (44.1 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
Identities = 28/99 (28%), Positives = 52/99 (52%)
Query: 89 LAVGQSSIADEISEL--IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 146
LA +AD+ + +K + G P+ +++L+ V+I +ATPGRL+D + + +
Sbjct: 256 LAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQ--IRDLERGVEICIATPGRLIDFLESGK 313
Query: 147 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
L YLV+DE DR+L ++ + ++ R D +
Sbjct: 314 T-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 351
Score = 81 (33.6 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDV 75
RD+ + TGSGKTL+Y LP + ++++ LV+ PTR+LA QV+ V
Sbjct: 209 RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQV 263
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 187 (70.9 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
Identities = 54/199 (27%), Positives = 90/199 (45%)
Query: 212 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 271
R D+ P ++ SAT ++ +LA+ L + G + +C
Sbjct: 340 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCME 399
Query: 272 KLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 328
K L+ L++ + E K I+F + L + G + I G + Q
Sbjct: 400 SEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH---GDKSQPE 456
Query: 329 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388
R L FR GK +L+++D +RG+DVE V V+NYD P + Y+HR GRTAR+ G
Sbjct: 457 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 516
Query: 389 RCFTLLHKDEVKRFKKLLQ 407
+T +K+ ++L++
Sbjct: 517 TAYTFFTPGNLKQARELIK 535
Score = 111 (44.1 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
Identities = 28/99 (28%), Positives = 52/99 (52%)
Query: 89 LAVGQSSIADEISEL--IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 146
LA +AD+ + +K + G P+ +++L+ V+I +ATPGRL+D + + +
Sbjct: 256 LAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQ--IRDLERGVEICIATPGRLIDFLESGK 313
Query: 147 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
L YLV+DE DR+L ++ + ++ R D +
Sbjct: 314 T-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 351
Score = 81 (33.6 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDV 75
RD+ + TGSGKTL+Y LP + ++++ LV+ PTR+LA QV+ V
Sbjct: 209 RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQV 263
>UNIPROTKB|E1BW15 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0043330 "response to exogenous dsRNA" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003725
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0043330 GeneTree:ENSGT00680000100003 OMA:EILCVAY
EMBL:AADN02028009 IPI:IPI00582179 Ensembl:ENSGALT00000006591
Uniprot:E1BW15
Length = 693
Score = 162 (62.1 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
Identities = 40/121 (33%), Positives = 63/121 (52%)
Query: 289 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 348
+ IVF + + + L LN ++ + G Q R TLK FR G +VLV+++
Sbjct: 367 RTIVFCETKKDANELA--LN--ASIKQDCQSLHGDIPQKQREITLKGFRNGAFKVLVATN 422
Query: 349 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408
RG+D+ V+ VV P +++YIHR+GRT RAG+ G C + E + + + K
Sbjct: 423 VAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQRKEENQLRYVEVK 482
Query: 409 A 409
A
Sbjct: 483 A 483
Score = 122 (48.0 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-----NRAVRC 56
G++ LFPVQV +T P +D+ + TG+GKT S+A+P+++ L R R
Sbjct: 132 GVTYLFPVQV----KTFNPVYSGKDVIAQARTGTGKTFSFAIPLIEKLQADSQERRRGRS 187
Query: 57 LRALVVLPTRDLALQV-KD 74
+ LV+ PTR+LA QV KD
Sbjct: 188 PKVLVLAPTRELANQVAKD 206
Score = 97 (39.2 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
Identities = 20/64 (31%), Positives = 40/64 (62%)
Query: 124 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT-RS 182
++S +DILV TPGR+ DH+ + L + ++V+DE D++L + + +L++ +
Sbjct: 232 IRSGIDILVGTPGRIKDHLQNGK-LDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKK 290
Query: 183 DNEN 186
D+E+
Sbjct: 291 DSED 294
Score = 37 (18.1 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 7/35 (20%), Positives = 19/35 (54%)
Query: 389 RCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSL 423
RC + + ++ FK+ Q + P++++ ++L
Sbjct: 508 RCLDSVPQTAIEYFKESAQLLIEEKGPVNALAAAL 542
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 187 (70.9 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
Identities = 54/199 (27%), Positives = 90/199 (45%)
Query: 212 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 271
R D+ P ++ SAT ++ +LA+ L + G + +C
Sbjct: 342 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCME 401
Query: 272 KLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 328
K L+ L++ + E K I+F + L + G + I G + Q
Sbjct: 402 SEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH---GDKSQPE 458
Query: 329 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388
R L FR GK +L+++D +RG+DVE V V+NYD P + Y+HR GRTAR+ G
Sbjct: 459 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 518
Query: 389 RCFTLLHKDEVKRFKKLLQ 407
+T +K+ ++L++
Sbjct: 519 TAYTFFTPGNLKQARELIK 537
Score = 111 (44.1 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
Identities = 28/99 (28%), Positives = 52/99 (52%)
Query: 89 LAVGQSSIADEISEL--IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 146
LA +AD+ + +K + G P+ +++L+ V+I +ATPGRL+D + + +
Sbjct: 258 LAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQ--IRDLERGVEICIATPGRLIDFLESGK 315
Query: 147 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
L YLV+DE DR+L ++ + ++ R D +
Sbjct: 316 T-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 353
Score = 81 (33.6 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDV 75
RD+ + TGSGKTL+Y LP + ++++ LV+ PTR+LA QV+ V
Sbjct: 211 RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQV 265
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 187 (70.9 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
Identities = 54/199 (27%), Positives = 90/199 (45%)
Query: 212 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 271
R D+ P ++ SAT ++ +LA+ L + G + +C
Sbjct: 342 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCME 401
Query: 272 KLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 328
K L+ L++ + E K I+F + L + G + I G + Q
Sbjct: 402 SEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH---GDKSQPE 458
Query: 329 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388
R L FR GK +L+++D +RG+DVE V V+NYD P + Y+HR GRTAR+ G
Sbjct: 459 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 518
Query: 389 RCFTLLHKDEVKRFKKLLQ 407
+T +K+ ++L++
Sbjct: 519 TAYTFFTPGNLKQARELIK 537
Score = 111 (44.1 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
Identities = 28/99 (28%), Positives = 52/99 (52%)
Query: 89 LAVGQSSIADEISEL--IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 146
LA +AD+ + +K + G P+ +++L+ V+I +ATPGRL+D + + +
Sbjct: 258 LAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQ--IRDLERGVEICIATPGRLIDFLESGK 315
Query: 147 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 185
L YLV+DE DR+L ++ + ++ R D +
Sbjct: 316 T-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 353
Score = 81 (33.6 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDV 75
RD+ + TGSGKTL+Y LP + ++++ LV+ PTR+LA QV+ V
Sbjct: 211 RDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQV 265
>UNIPROTKB|Q3SZ65 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 KO:K03257
OrthoDB:EOG4640C1 EMBL:BC103106 IPI:IPI00711238
RefSeq:NP_001029216.1 UniGene:Bt.13925 ProteinModelPortal:Q3SZ65
SMR:Q3SZ65 STRING:Q3SZ65 PRIDE:Q3SZ65 Ensembl:ENSBTAT00000019596
GeneID:286819 KEGG:bta:286819 CTD:1974 InParanoid:Q3SZ65
OMA:TENDARQ NextBio:20806473 ArrayExpress:Q3SZ65 Uniprot:Q3SZ65
Length = 407
Score = 170 (64.9 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
Identities = 54/223 (24%), Positives = 105/223 (47%)
Query: 210 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 189 LSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIK 248
Query: 263 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 322
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 249 QFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKM-HARDFTVSALH--G 305
Query: 323 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 382
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 306 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 365
Query: 383 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIE 425
R G+ G + +++ KR + ++ N + + +P ++ +
Sbjct: 366 RFGRKGVAINFVTEED-KRILRDIETFYNTT--VEEMPMNVAD 405
Score = 123 (48.4 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
Identities = 30/102 (29%), Positives = 58/102 (56%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ Q I P + D+ + +G+GKT ++A+ I+Q L + +ALV+ PTR+LA Q
Sbjct: 58 AIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-FKETQALVLAPTRELAQQ 116
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 112
++ V A+ +G + +G +++ +E+ +L + P + G
Sbjct: 117 IQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVG 158
Score = 75 (31.5 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 121 LQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
+Q+LQ+ A I+V TPGR+ D +N R + + + V+DE D +L ++ + + Q
Sbjct: 145 MQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
>UNIPROTKB|E2R3J1 [details] [associations]
symbol:EIF4A2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:AAEX03017297 RefSeq:XP_860499.2 ProteinModelPortal:E2R3J1
SMR:E2R3J1 PRIDE:E2R3J1 Ensembl:ENSCAFT00000021683 GeneID:488118
KEGG:cfa:488118 NextBio:20861546 Uniprot:E2R3J1
Length = 407
Score = 170 (64.9 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
Identities = 54/223 (24%), Positives = 105/223 (47%)
Query: 210 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 262
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 189 LSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIK 248
Query: 263 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 322
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 249 QFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKM-HARDFTVSALH--G 305
Query: 323 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 382
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 306 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 365
Query: 383 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIE 425
R G+ G + +++ KR + ++ N + + +P ++ +
Sbjct: 366 RFGRKGVAINFVTEED-KRILRDIETFYNTT--VEEMPMNVAD 405
Score = 123 (48.4 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
Identities = 30/102 (29%), Positives = 58/102 (56%)
Query: 12 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71
A+ Q I P + D+ + +G+GKT ++A+ I+Q L + +ALV+ PTR+LA Q
Sbjct: 58 AIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-FKETQALVLAPTRELAQQ 116
Query: 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 112
++ V A+ +G + +G +++ +E+ +L + P + G
Sbjct: 117 IQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVG 158
Score = 75 (31.5 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 121 LQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178
+Q+LQ+ A I+V TPGR+ D +N R + + + V+DE D +L ++ + + Q
Sbjct: 145 MQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
WARNING: HSPs involving 614 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 436 436 0.00088 118 3 11 22 0.38 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 864
No. of states in DFA: 612 (65 KB)
Total size of DFA: 247 KB (2134 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 35.95u 0.12s 36.07t Elapsed: 00:00:02
Total cpu time: 36.03u 0.13s 36.16t Elapsed: 00:00:02
Start: Mon May 20 15:52:43 2013 End: Mon May 20 15:52:45 2013
WARNINGS ISSUED: 2