Query 013826
Match_columns 436
No_of_seqs 132 out of 1468
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 07:46:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 1.7E-54 3.6E-59 369.9 28.6 360 1-429 79-438 (476)
2 KOG0331 ATP-dependent RNA heli 100.0 4.9E-53 1.1E-57 384.8 29.3 356 2-426 110-474 (519)
3 PRK04837 ATP-dependent RNA hel 100.0 1.9E-51 4.1E-56 387.8 34.1 354 1-421 26-385 (423)
4 PTZ00110 helicase; Provisional 100.0 2.5E-51 5.5E-56 394.3 35.3 356 1-426 148-510 (545)
5 KOG0350 DEAD-box ATP-dependent 100.0 6.6E-52 1.4E-56 364.7 26.5 400 1-425 155-569 (620)
6 PRK04537 ATP-dependent RNA hel 100.0 1.1E-50 2.5E-55 390.9 35.1 363 1-429 27-395 (572)
7 PLN00206 DEAD-box ATP-dependen 100.0 1.3E-50 2.8E-55 388.6 34.6 354 1-425 139-500 (518)
8 PRK11776 ATP-dependent RNA hel 100.0 1.8E-50 3.9E-55 385.3 34.2 341 1-411 22-363 (460)
9 PRK10590 ATP-dependent RNA hel 100.0 2.2E-50 4.8E-55 382.6 34.0 343 1-411 19-366 (456)
10 PRK11192 ATP-dependent RNA hel 100.0 3E-50 6.6E-55 381.5 34.7 342 1-410 19-365 (434)
11 PRK01297 ATP-dependent RNA hel 100.0 1.1E-49 2.5E-54 380.5 37.5 347 1-412 105-457 (475)
12 PRK11634 ATP-dependent RNA hel 100.0 2.2E-49 4.7E-54 383.8 36.1 340 1-409 24-364 (629)
13 KOG0338 ATP-dependent RNA heli 100.0 6.9E-50 1.5E-54 352.7 27.1 366 1-432 199-570 (691)
14 COG0513 SrmB Superfamily II DN 100.0 2.1E-49 4.6E-54 377.2 32.7 345 1-412 47-396 (513)
15 PTZ00424 helicase 45; Provisio 100.0 5.7E-49 1.2E-53 370.6 33.9 342 1-411 46-388 (401)
16 KOG0328 Predicted ATP-dependen 100.0 2.2E-49 4.7E-54 324.6 23.5 344 1-412 45-388 (400)
17 KOG0345 ATP-dependent RNA heli 100.0 3.2E-48 6.9E-53 339.2 29.7 345 1-409 24-375 (567)
18 KOG0333 U5 snRNP-like RNA heli 100.0 5.2E-48 1.1E-52 342.0 26.5 375 1-418 263-648 (673)
19 KOG0340 ATP-dependent RNA heli 100.0 5.3E-48 1.2E-52 326.3 25.0 351 1-419 25-382 (442)
20 KOG0342 ATP-dependent RNA heli 100.0 1.7E-47 3.7E-52 336.8 29.0 340 1-406 100-446 (543)
21 KOG0326 ATP-dependent RNA heli 100.0 3.8E-48 8.3E-53 322.6 17.7 349 1-422 103-451 (459)
22 KOG0343 RNA Helicase [RNA proc 100.0 1.5E-46 3.2E-51 334.7 28.1 335 2-401 88-426 (758)
23 KOG0335 ATP-dependent RNA heli 100.0 9.5E-46 2.1E-50 331.2 27.0 349 1-413 92-460 (482)
24 TIGR00614 recQ_fam ATP-depende 100.0 1.4E-45 3.1E-50 350.8 29.9 332 1-409 7-345 (470)
25 TIGR03817 DECH_helic helicase/ 100.0 5.2E-45 1.1E-49 360.3 29.7 339 1-405 32-396 (742)
26 KOG0348 ATP-dependent RNA heli 100.0 7.6E-45 1.6E-49 322.6 27.2 353 1-403 155-560 (708)
27 KOG0346 RNA helicase [RNA proc 100.0 1.3E-44 2.8E-49 314.0 26.0 364 1-430 37-450 (569)
28 KOG0336 ATP-dependent RNA heli 100.0 9.5E-45 2.1E-49 312.1 21.3 354 1-425 238-597 (629)
29 PLN03137 ATP-dependent DNA hel 100.0 1.5E-43 3.3E-48 347.9 31.8 331 1-408 456-798 (1195)
30 PRK11057 ATP-dependent DNA hel 100.0 1.9E-43 4.2E-48 344.5 31.7 329 1-408 21-354 (607)
31 KOG0339 ATP-dependent RNA heli 100.0 1E-43 2.2E-48 313.5 25.9 354 2-425 242-600 (731)
32 KOG0347 RNA helicase [RNA proc 100.0 2.8E-44 6E-49 320.0 17.2 367 1-429 199-603 (731)
33 TIGR01389 recQ ATP-dependent D 100.0 1.5E-42 3.3E-47 339.7 31.1 329 1-408 9-342 (591)
34 KOG0344 ATP-dependent RNA heli 100.0 7.7E-42 1.7E-46 308.2 22.3 355 1-418 154-516 (593)
35 KOG0332 ATP-dependent RNA heli 100.0 8.8E-42 1.9E-46 290.5 21.0 338 1-408 108-454 (477)
36 PRK13767 ATP-dependent helicas 100.0 1.2E-40 2.6E-45 335.9 33.0 333 2-395 29-396 (876)
37 PRK02362 ski2-like helicase; P 100.0 7.6E-41 1.6E-45 334.7 29.7 329 1-397 19-397 (737)
38 TIGR00580 mfd transcription-re 100.0 3.9E-40 8.5E-45 328.5 31.3 329 1-408 448-787 (926)
39 KOG4284 DEAD box protein [Tran 100.0 1.2E-40 2.6E-45 302.0 21.7 353 2-423 44-410 (980)
40 KOG0334 RNA helicase [RNA proc 100.0 2.8E-40 6E-45 317.0 24.0 366 1-432 383-755 (997)
41 COG1201 Lhr Lhr-like helicases 100.0 1.5E-39 3.3E-44 313.4 28.3 359 3-425 20-391 (814)
42 COG1111 MPH1 ERCC4-like helica 100.0 9.6E-39 2.1E-43 283.9 30.5 323 4-397 14-481 (542)
43 PRK00254 ski2-like helicase; P 100.0 1.6E-39 3.4E-44 324.4 28.2 323 1-398 19-389 (720)
44 TIGR00643 recG ATP-dependent D 100.0 3.2E-39 6.9E-44 316.3 29.7 319 1-395 232-564 (630)
45 COG0514 RecQ Superfamily II DN 100.0 2.3E-39 4.9E-44 301.2 26.8 330 1-410 13-350 (590)
46 PRK10917 ATP-dependent DNA hel 100.0 1E-38 2.2E-43 314.6 32.7 317 1-396 258-588 (681)
47 KOG0327 Translation initiation 100.0 1E-39 2.2E-44 280.1 22.2 351 1-424 44-394 (397)
48 KOG0341 DEAD-box protein abstr 100.0 1.2E-40 2.6E-45 285.0 16.2 339 2-409 189-544 (610)
49 PRK10689 transcription-repair 100.0 7.9E-39 1.7E-43 325.9 28.5 329 1-408 597-936 (1147)
50 KOG0337 ATP-dependent RNA heli 100.0 5.3E-39 1.1E-43 277.7 17.9 343 2-412 40-383 (529)
51 PRK01172 ski2-like helicase; P 100.0 5.1E-38 1.1E-42 312.4 27.7 331 2-406 20-388 (674)
52 PRK09751 putative ATP-dependen 100.0 2.2E-37 4.8E-42 316.9 30.5 309 29-395 1-383 (1490)
53 PHA02558 uvsW UvsW helicase; P 100.0 4.7E-37 1E-41 293.7 24.9 306 4-393 113-449 (501)
54 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.1E-36 2.3E-41 295.5 27.2 315 1-388 12-381 (844)
55 COG1204 Superfamily II helicas 100.0 1.7E-36 3.6E-41 296.5 24.1 328 2-397 28-408 (766)
56 TIGR00603 rad25 DNA repair hel 100.0 5E-36 1.1E-40 287.9 24.5 311 4-399 254-609 (732)
57 KOG0354 DEAD-box like helicase 100.0 1.2E-35 2.7E-40 279.5 24.6 325 4-398 61-530 (746)
58 KOG0952 DNA/RNA helicase MER3/ 100.0 6.7E-35 1.4E-39 278.2 22.6 370 1-436 106-527 (1230)
59 TIGR01587 cas3_core CRISPR-ass 100.0 2.7E-34 5.9E-39 266.3 25.1 314 26-397 1-336 (358)
60 COG1202 Superfamily II helicas 100.0 5.2E-35 1.1E-39 262.6 19.2 327 1-397 212-553 (830)
61 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.7E-34 5.9E-39 283.9 25.9 307 15-401 8-340 (819)
62 PHA02653 RNA helicase NPH-II; 100.0 2.8E-34 6E-39 277.2 25.0 320 4-400 159-517 (675)
63 PRK09401 reverse gyrase; Revie 100.0 2.1E-33 4.6E-38 287.0 31.0 312 1-369 77-410 (1176)
64 PRK11664 ATP-dependent RNA hel 100.0 4.7E-34 1E-38 282.9 22.2 307 15-401 11-343 (812)
65 COG1205 Distinct helicase fami 100.0 1.7E-33 3.7E-38 279.3 26.1 334 2-397 67-422 (851)
66 PRK13766 Hef nuclease; Provisi 100.0 4.7E-33 1E-37 282.2 29.5 359 3-397 13-479 (773)
67 COG1061 SSL2 DNA or RNA helica 100.0 2.3E-33 5E-38 262.9 21.8 339 5-389 36-382 (442)
68 TIGR03714 secA2 accessory Sec 100.0 1.1E-32 2.5E-37 264.8 24.8 369 6-409 69-556 (762)
69 PRK14701 reverse gyrase; Provi 100.0 1E-32 2.2E-37 287.8 25.1 353 1-408 76-467 (1638)
70 COG1200 RecG RecG-like helicas 100.0 5E-32 1.1E-36 251.6 26.3 318 2-398 260-592 (677)
71 KOG0951 RNA helicase BRR2, DEA 100.0 2.6E-32 5.6E-37 264.0 22.2 369 1-434 305-736 (1674)
72 PRK12898 secA preprotein trans 100.0 9.3E-32 2E-36 255.6 24.1 355 2-398 101-587 (656)
73 KOG0351 ATP-dependent DNA heli 100.0 4E-32 8.7E-37 267.6 22.4 332 1-409 260-604 (941)
74 PRK09200 preprotein translocas 100.0 9.7E-32 2.1E-36 261.0 23.9 354 5-398 78-542 (790)
75 TIGR01054 rgy reverse gyrase. 100.0 8E-31 1.7E-35 268.6 30.7 305 5-368 78-408 (1171)
76 TIGR00963 secA preprotein tran 100.0 3.3E-31 7.2E-36 253.1 25.8 354 5-399 56-519 (745)
77 KOG0329 ATP-dependent RNA heli 100.0 1E-32 2.2E-37 223.5 12.8 303 1-406 60-365 (387)
78 TIGR03158 cas3_cyano CRISPR-as 100.0 8.1E-31 1.8E-35 240.0 26.6 312 9-382 1-357 (357)
79 COG4098 comFA Superfamily II D 100.0 1.7E-30 3.7E-35 219.7 23.6 314 5-401 97-420 (441)
80 PRK04914 ATP-dependent helicas 100.0 3.2E-30 7E-35 256.6 28.2 135 272-409 478-615 (956)
81 COG1197 Mfd Transcription-repa 100.0 6.8E-30 1.5E-34 250.5 29.1 328 1-407 591-929 (1139)
82 PRK05580 primosome assembly pr 100.0 2E-29 4.3E-34 247.8 29.8 322 5-398 144-550 (679)
83 PRK11448 hsdR type I restricti 100.0 2.9E-30 6.3E-35 262.6 24.0 323 5-394 413-813 (1123)
84 KOG0352 ATP-dependent DNA heli 100.0 1.3E-30 2.8E-35 226.4 18.1 333 1-406 15-371 (641)
85 PRK09694 helicase Cas3; Provis 100.0 1.4E-28 3.1E-33 243.4 28.4 335 4-386 285-664 (878)
86 TIGR00595 priA primosomal prot 100.0 1.4E-28 3E-33 233.4 23.7 298 28-396 1-380 (505)
87 PRK11131 ATP-dependent RNA hel 100.0 3.7E-28 8.1E-33 245.3 24.2 301 17-401 82-415 (1294)
88 KOG0353 ATP-dependent DNA heli 100.0 2.7E-28 5.8E-33 209.2 19.4 319 2-399 91-469 (695)
89 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.2E-27 2.6E-32 242.6 23.7 308 15-401 73-408 (1283)
90 PRK13104 secA preprotein trans 100.0 2.8E-26 6.1E-31 222.6 26.5 351 24-409 95-606 (896)
91 KOG0349 Putative DEAD-box RNA 100.0 3.6E-27 7.9E-32 205.4 17.5 294 57-405 287-623 (725)
92 PLN03142 Probable chromatin-re 99.9 4.6E-26 1E-30 227.8 25.8 358 5-394 169-594 (1033)
93 PRK12904 preprotein translocas 99.9 2.8E-26 6E-31 222.5 22.4 353 5-398 81-574 (830)
94 KOG0947 Cytoplasmic exosomal R 99.9 2.7E-26 5.8E-31 217.5 20.9 315 2-397 295-723 (1248)
95 PRK12906 secA preprotein trans 99.9 1.1E-26 2.4E-31 224.3 18.6 353 5-398 80-554 (796)
96 COG4096 HsdR Type I site-speci 99.9 5.4E-26 1.2E-30 214.5 22.0 339 4-384 164-525 (875)
97 KOG0950 DNA polymerase theta/e 99.9 1E-25 2.2E-30 214.7 17.9 339 2-409 220-623 (1008)
98 TIGR00348 hsdR type I site-spe 99.9 2.4E-24 5.3E-29 211.9 27.7 333 6-410 239-662 (667)
99 COG4581 Superfamily II RNA hel 99.9 3.5E-25 7.7E-30 217.5 21.3 320 1-397 116-537 (1041)
100 PRK13107 preprotein translocas 99.9 3E-24 6.4E-29 208.0 23.2 364 5-409 82-610 (908)
101 COG1198 PriA Primosomal protei 99.9 4.5E-24 9.8E-29 205.3 22.3 327 4-401 197-607 (730)
102 cd00268 DEADc DEAD-box helicas 99.9 4E-24 8.7E-29 182.1 18.1 185 1-249 17-202 (203)
103 COG4889 Predicted helicase [Ge 99.9 3.1E-25 6.8E-30 208.5 11.8 376 4-393 160-582 (1518)
104 KOG0948 Nuclear exosomal RNA h 99.9 7.4E-25 1.6E-29 202.9 13.3 310 5-397 129-539 (1041)
105 PRK12899 secA preprotein trans 99.9 3.3E-23 7E-28 201.1 24.9 134 1-166 85-229 (970)
106 KOG0385 Chromatin remodeling c 99.9 5.4E-23 1.2E-27 191.3 24.9 382 5-419 167-623 (971)
107 COG1203 CRISPR-associated heli 99.9 8.1E-24 1.8E-28 210.4 20.0 342 6-397 196-550 (733)
108 TIGR01407 dinG_rel DnaQ family 99.9 3.2E-22 7E-27 203.1 31.2 402 2-412 243-830 (850)
109 COG0556 UvrB Helicase subunit 99.9 5.1E-23 1.1E-27 184.6 21.7 198 221-430 386-600 (663)
110 COG1110 Reverse gyrase [DNA re 99.9 7.3E-22 1.6E-26 189.8 26.5 320 2-368 80-416 (1187)
111 TIGR00631 uvrb excinuclease AB 99.9 5.3E-21 1.2E-25 186.1 30.9 122 274-399 427-555 (655)
112 COG1643 HrpA HrpA-like helicas 99.9 1.4E-22 3.1E-27 198.0 20.0 311 16-400 57-390 (845)
113 PF00270 DEAD: DEAD/DEAH box h 99.9 2.1E-22 4.5E-27 166.5 17.1 148 7-181 1-148 (169)
114 KOG0922 DEAH-box RNA helicase 99.9 3.1E-22 6.8E-27 184.8 19.6 306 16-401 58-394 (674)
115 PRK07246 bifunctional ATP-depe 99.9 6.4E-21 1.4E-25 190.9 30.1 400 5-421 245-808 (820)
116 KOG0384 Chromodomain-helicase 99.9 2.9E-23 6.3E-28 202.1 11.4 372 4-398 369-812 (1373)
117 KOG0949 Predicted helicase, DE 99.9 1.9E-22 4.2E-27 192.0 16.4 149 6-183 512-663 (1330)
118 KOG1123 RNA polymerase II tran 99.9 4.4E-21 9.6E-26 170.7 17.5 313 4-401 301-657 (776)
119 PRK05298 excinuclease ABC subu 99.9 4.6E-19 9.9E-24 174.1 33.6 134 274-411 431-580 (652)
120 PRK12900 secA preprotein trans 99.9 3.9E-21 8.5E-26 187.3 18.1 127 268-399 577-713 (1025)
121 PRK12326 preprotein translocas 99.9 1E-19 2.2E-24 172.7 22.8 353 5-398 78-548 (764)
122 KOG0387 Transcription-coupled 99.9 2E-20 4.4E-25 175.2 17.4 368 4-393 204-652 (923)
123 KOG0926 DEAH-box RNA helicase 99.9 9.6E-21 2.1E-25 177.1 14.4 318 16-399 263-706 (1172)
124 PRK08074 bifunctional ATP-depe 99.9 7.3E-19 1.6E-23 179.5 29.1 121 286-408 751-905 (928)
125 KOG0923 mRNA splicing factor A 99.8 1.3E-19 2.9E-24 166.4 20.1 302 18-400 274-609 (902)
126 KOG0390 DNA repair protein, SN 99.8 5.8E-19 1.3E-23 169.3 23.9 365 4-394 237-702 (776)
127 PRK13103 secA preprotein trans 99.8 1.7E-19 3.7E-24 175.4 18.8 352 5-398 82-592 (913)
128 KOG0924 mRNA splicing factor A 99.8 8.5E-19 1.8E-23 161.6 22.2 297 23-399 370-699 (1042)
129 TIGR03117 cas_csf4 CRISPR-asso 99.8 1.8E-17 3.9E-22 158.9 29.1 85 9-95 1-88 (636)
130 COG1199 DinG Rad3-related DNA 99.8 5.7E-18 1.2E-22 169.2 25.4 130 278-413 471-634 (654)
131 KOG1000 Chromatin remodeling p 99.8 4.1E-18 8.8E-23 151.7 19.8 313 4-395 197-599 (689)
132 PRK12903 secA preprotein trans 99.8 3.8E-18 8.1E-23 164.4 18.4 352 5-398 78-540 (925)
133 TIGR00604 rad3 DNA repair heli 99.8 9.6E-18 2.1E-22 167.5 22.0 78 1-79 6-83 (705)
134 KOG0389 SNF2 family DNA-depend 99.8 8.5E-18 1.8E-22 157.6 19.0 368 5-397 399-888 (941)
135 PRK11747 dinG ATP-dependent DN 99.8 3.3E-16 7.1E-21 155.3 31.0 118 286-409 533-688 (697)
136 KOG0392 SNF2 family DNA-depend 99.8 1.1E-17 2.4E-22 163.3 19.6 111 287-397 1340-1454(1549)
137 CHL00122 secA preprotein trans 99.8 7.3E-17 1.6E-21 156.5 23.3 128 5-165 76-209 (870)
138 KOG0920 ATP-dependent RNA heli 99.8 7.9E-18 1.7E-22 164.4 15.4 316 17-403 181-550 (924)
139 cd00079 HELICc Helicase superf 99.8 5.5E-18 1.2E-22 133.7 11.6 118 273-393 12-131 (131)
140 smart00487 DEXDc DEAD-like hel 99.7 7.8E-17 1.7E-21 137.1 17.3 184 1-250 4-189 (201)
141 KOG0953 Mitochondrial RNA heli 99.7 6.4E-17 1.4E-21 146.3 16.2 277 25-407 192-486 (700)
142 PRK12902 secA preprotein trans 99.7 5.7E-16 1.2E-20 150.1 23.7 127 5-164 85-217 (939)
143 KOG0951 RNA helicase BRR2, DEA 99.7 1.2E-16 2.7E-21 156.5 16.3 323 6-407 1144-1504(1674)
144 PF04851 ResIII: Type III rest 99.7 3.2E-17 7E-22 137.5 10.5 147 5-168 3-162 (184)
145 PF00271 Helicase_C: Helicase 99.7 2.9E-17 6.4E-22 116.2 8.0 77 306-385 2-78 (78)
146 KOG0925 mRNA splicing factor A 99.7 2.9E-15 6.3E-20 133.6 21.4 293 22-398 60-388 (699)
147 KOG4150 Predicted ATP-dependen 99.7 6.3E-16 1.4E-20 140.2 10.8 329 4-397 285-640 (1034)
148 KOG0386 Chromatin remodeling c 99.7 1.9E-15 4E-20 145.6 14.5 370 5-406 394-845 (1157)
149 KOG0391 SNF2 family DNA-depend 99.6 6.1E-14 1.3E-18 136.7 23.7 120 273-395 1260-1383(1958)
150 cd00046 DEXDc DEAD-like helica 99.6 1.4E-14 3E-19 115.9 15.8 121 25-170 1-121 (144)
151 PRK12901 secA preprotein trans 99.6 2.2E-14 4.7E-19 140.8 19.9 136 270-410 609-761 (1112)
152 PRK14873 primosome assembly pr 99.6 3.8E-14 8.3E-19 138.1 20.0 105 27-163 163-268 (665)
153 KOG0388 SNF2 family DNA-depend 99.6 7.2E-14 1.6E-18 130.0 19.3 123 272-397 1027-1154(1185)
154 PF06862 DUF1253: Protein of u 99.6 8.3E-13 1.8E-17 120.8 22.6 338 49-406 30-424 (442)
155 smart00490 HELICc helicase sup 99.6 1.1E-14 2.3E-19 104.4 8.4 81 302-385 2-82 (82)
156 KOG1002 Nucleotide excision re 99.5 8.9E-13 1.9E-17 118.2 19.1 108 287-397 638-749 (791)
157 TIGR02562 cas3_yersinia CRISPR 99.5 1.4E-12 3.1E-17 128.9 20.1 339 6-387 409-882 (1110)
158 KOG4439 RNA polymerase II tran 99.5 6.5E-12 1.4E-16 117.2 21.3 105 286-393 745-852 (901)
159 smart00488 DEXDc2 DEAD-like he 99.4 8.5E-13 1.8E-17 117.2 11.3 78 1-79 5-84 (289)
160 smart00489 DEXDc3 DEAD-like he 99.4 8.5E-13 1.8E-17 117.2 11.3 78 1-79 5-84 (289)
161 PF07652 Flavi_DEAD: Flaviviru 99.4 7.9E-13 1.7E-17 100.6 9.2 105 23-164 3-107 (148)
162 KOG1015 Transcription regulato 99.4 6.4E-12 1.4E-16 120.8 16.4 119 277-395 1130-1273(1567)
163 PF02399 Herpes_ori_bp: Origin 99.4 3.4E-11 7.3E-16 116.3 20.9 102 286-397 281-388 (824)
164 COG0610 Type I site-specific r 99.4 4.8E-11 1E-15 121.9 23.0 114 24-164 273-388 (962)
165 COG0653 SecA Preprotein transl 99.4 7.1E-12 1.5E-16 121.6 14.7 120 18-164 87-212 (822)
166 COG0553 HepA Superfamily II DN 99.3 2.6E-11 5.7E-16 126.5 16.8 119 273-394 692-817 (866)
167 PF00176 SNF2_N: SNF2 family N 99.3 1.7E-11 3.8E-16 111.2 9.5 133 9-164 1-146 (299)
168 KOG2340 Uncharacterized conser 99.1 1.4E-09 2.9E-14 98.9 14.2 262 126-406 384-677 (698)
169 KOG1133 Helicase of the DEAD s 99.0 2.6E-07 5.6E-12 87.2 24.6 47 2-49 13-59 (821)
170 KOG1131 RNA polymerase II tran 99.0 9.7E-08 2.1E-12 87.0 19.7 79 1-79 12-90 (755)
171 PF07517 SecA_DEAD: SecA DEAD- 98.9 1.8E-08 4E-13 87.0 11.2 129 5-166 77-211 (266)
172 PF13307 Helicase_C_2: Helicas 98.9 9.1E-09 2E-13 83.9 8.7 113 286-402 8-156 (167)
173 PRK15483 type III restriction- 98.8 2.2E-08 4.8E-13 100.1 11.7 45 340-384 501-545 (986)
174 PF13086 AAA_11: AAA domain; P 98.8 2.5E-08 5.4E-13 87.0 8.9 70 5-78 1-75 (236)
175 KOG0952 DNA/RNA helicase MER3/ 98.8 3.3E-09 7.2E-14 104.0 3.3 116 23-164 942-1058(1230)
176 KOG1016 Predicted DNA helicase 98.7 7.7E-07 1.7E-11 85.0 17.1 147 288-434 720-894 (1387)
177 COG3587 Restriction endonuclea 98.6 2.2E-06 4.7E-11 83.1 15.4 74 340-413 483-569 (985)
178 KOG1802 RNA helicase nonsense 98.5 1.4E-06 2.9E-11 82.1 11.5 80 1-91 406-485 (935)
179 KOG1132 Helicase of the DEAD s 98.5 3.3E-07 7.1E-12 88.9 7.3 76 5-80 21-134 (945)
180 PF02562 PhoH: PhoH-like prote 98.5 4.2E-07 9.1E-12 75.4 6.5 60 3-68 2-61 (205)
181 PF13245 AAA_19: Part of AAA d 98.3 2.9E-06 6.3E-11 58.6 7.6 53 24-76 10-62 (76)
182 PF13604 AAA_30: AAA domain; P 98.3 3.1E-06 6.8E-11 70.9 9.0 65 5-75 1-65 (196)
183 COG3421 Uncharacterized protei 98.3 6.6E-06 1.4E-10 76.8 10.5 118 29-167 2-127 (812)
184 KOG0921 Dosage compensation co 98.3 1.1E-05 2.5E-10 78.6 12.2 114 287-401 643-778 (1282)
185 KOG1803 DNA helicase [Replicat 98.3 4.6E-06 1E-10 78.1 9.3 66 4-76 184-249 (649)
186 PF12340 DUF3638: Protein of u 98.3 1.2E-05 2.6E-10 67.3 10.6 119 5-141 23-144 (229)
187 PF13872 AAA_34: P-loop contai 98.2 7E-06 1.5E-10 71.4 8.6 133 5-166 37-186 (303)
188 TIGR00376 DNA helicase, putati 98.2 1.4E-05 3E-10 79.1 11.3 69 4-79 156-224 (637)
189 PF09848 DUF2075: Uncharacteri 98.1 1.3E-05 2.8E-10 74.0 7.8 52 26-79 3-54 (352)
190 smart00491 HELICc2 helicase su 98.0 3.1E-05 6.7E-10 60.9 8.2 94 299-394 3-136 (142)
191 smart00492 HELICc3 helicase su 98.0 4.1E-05 9E-10 60.0 8.7 64 324-387 31-128 (141)
192 TIGR00596 rad1 DNA repair prot 98.0 4.3E-05 9.3E-10 76.9 10.6 52 126-178 6-57 (814)
193 PRK10536 hypothetical protein; 98.0 2.7E-05 5.8E-10 66.7 7.4 59 3-67 57-115 (262)
194 KOG1001 Helicase-like transcri 97.9 2.6E-05 5.6E-10 76.7 6.3 103 288-393 540-644 (674)
195 PRK10875 recD exonuclease V su 97.8 8.6E-05 1.9E-09 72.8 9.2 68 7-79 154-222 (615)
196 TIGR01447 recD exodeoxyribonuc 97.8 0.00013 2.7E-09 71.5 10.0 67 8-79 148-216 (586)
197 PF00580 UvrD-helicase: UvrD/R 97.8 7.8E-05 1.7E-09 68.1 7.4 71 6-82 1-71 (315)
198 TIGR01075 uvrD DNA helicase II 97.6 0.00022 4.7E-09 72.5 8.6 71 4-80 3-73 (715)
199 KOG0383 Predicted helicase [Ge 97.6 5.5E-06 1.2E-10 80.4 -2.8 335 5-353 295-696 (696)
200 KOG1805 DNA replication helica 97.6 0.00044 9.5E-09 68.7 9.9 143 4-166 668-810 (1100)
201 PRK11773 uvrD DNA-dependent he 97.5 0.00026 5.6E-09 72.0 8.1 71 4-80 8-78 (721)
202 KOG0989 Replication factor C, 97.5 0.00031 6.7E-09 60.8 6.9 38 9-46 40-79 (346)
203 TIGR01448 recD_rel helicase, p 97.5 0.0004 8.7E-09 70.0 8.8 63 5-73 323-385 (720)
204 TIGR02768 TraA_Ti Ti-type conj 97.4 0.001 2.2E-08 67.4 10.4 61 5-72 352-412 (744)
205 PF05970 PIF1: PIF1-like helic 97.4 0.00066 1.4E-08 63.0 7.9 62 5-70 1-64 (364)
206 PRK10919 ATP-dependent DNA hel 97.4 0.00047 1E-08 69.3 7.4 71 5-81 2-72 (672)
207 PRK13889 conjugal transfer rel 97.3 0.0012 2.5E-08 68.2 9.7 61 5-72 346-406 (988)
208 PRK12723 flagellar biosynthesi 97.3 0.0029 6.2E-08 58.6 10.7 39 25-63 175-213 (388)
209 PRK11054 helD DNA helicase IV; 97.2 0.001 2.2E-08 66.5 7.5 71 5-81 196-266 (684)
210 COG1484 DnaC DNA replication p 97.2 0.0024 5.2E-08 55.8 8.7 68 5-77 83-153 (254)
211 PF13871 Helicase_C_4: Helicas 97.2 0.0014 3.1E-08 57.1 7.0 65 331-395 52-125 (278)
212 COG1875 NYN ribonuclease and A 97.1 0.0026 5.6E-08 56.7 8.5 66 1-69 224-289 (436)
213 PF13401 AAA_22: AAA domain; P 97.1 0.0034 7.3E-08 48.9 8.3 24 24-47 4-27 (131)
214 PRK04296 thymidine kinase; Pro 97.1 0.0011 2.3E-08 55.4 5.7 36 26-65 4-39 (190)
215 PRK13826 Dtr system oriT relax 97.1 0.0036 7.9E-08 65.1 10.5 61 5-72 381-441 (1102)
216 cd00009 AAA The AAA+ (ATPases 97.1 0.0045 9.8E-08 49.1 9.1 38 24-65 19-56 (151)
217 TIGR01074 rep ATP-dependent DN 97.1 0.0016 3.6E-08 65.9 7.8 70 6-81 2-71 (664)
218 TIGR01073 pcrA ATP-dependent D 97.0 0.0031 6.7E-08 64.4 8.6 72 4-81 3-74 (726)
219 PRK06526 transposase; Provisio 97.0 0.0028 6.2E-08 55.3 7.2 38 21-62 95-132 (254)
220 COG1419 FlhF Flagellar GTP-bin 96.8 0.0088 1.9E-07 54.7 9.3 63 24-89 203-265 (407)
221 PF00308 Bac_DnaA: Bacterial d 96.8 0.014 3E-07 49.9 10.2 39 25-65 35-73 (219)
222 PRK14722 flhF flagellar biosyn 96.7 0.0079 1.7E-07 55.3 8.4 27 23-49 136-162 (374)
223 PRK12377 putative replication 96.7 0.01 2.3E-07 51.4 8.6 44 25-73 102-145 (248)
224 cd01124 KaiC KaiC is a circadi 96.6 0.015 3.2E-07 48.5 9.1 48 27-79 2-49 (187)
225 TIGR02785 addA_Gpos recombinat 96.6 0.021 4.5E-07 61.8 12.0 124 6-163 2-126 (1232)
226 PRK08727 hypothetical protein; 96.6 0.017 3.6E-07 50.0 9.1 35 25-63 42-76 (233)
227 PRK08181 transposase; Validate 96.5 0.032 6.9E-07 49.1 10.6 63 6-73 88-150 (269)
228 PRK14956 DNA polymerase III su 96.5 0.0044 9.5E-08 58.5 5.3 38 9-46 22-62 (484)
229 PRK06921 hypothetical protein; 96.5 0.011 2.5E-07 52.0 7.5 38 24-64 117-154 (266)
230 PRK06893 DNA replication initi 96.4 0.019 4.2E-07 49.5 8.6 36 25-64 40-75 (229)
231 PRK07952 DNA replication prote 96.4 0.014 3.1E-07 50.4 7.6 52 7-62 78-133 (244)
232 KOG0298 DEAD box-containing he 96.4 0.012 2.5E-07 60.7 7.8 104 18-144 368-485 (1394)
233 PF05496 RuvB_N: Holliday junc 96.4 0.012 2.6E-07 49.5 6.6 19 25-43 51-69 (233)
234 PRK08084 DNA replication initi 96.4 0.038 8.1E-07 47.9 10.1 37 24-64 45-81 (235)
235 PF03354 Terminase_1: Phage Te 96.4 0.011 2.5E-07 57.1 7.5 75 8-82 1-80 (477)
236 smart00382 AAA ATPases associa 96.3 0.0082 1.8E-07 47.2 5.1 42 24-69 2-43 (148)
237 PRK08116 hypothetical protein; 96.2 0.03 6.4E-07 49.5 8.9 42 25-71 115-156 (268)
238 COG1435 Tdk Thymidine kinase [ 96.2 0.028 6.1E-07 45.8 7.9 103 25-179 5-108 (201)
239 TIGR03499 FlhF flagellar biosy 96.2 0.024 5.2E-07 50.6 8.2 38 24-63 194-231 (282)
240 PRK14712 conjugal transfer nic 96.2 0.027 6E-07 61.0 9.8 65 5-72 835-900 (1623)
241 PRK06645 DNA polymerase III su 96.2 0.0076 1.7E-07 58.0 5.1 38 9-46 25-65 (507)
242 PRK10917 ATP-dependent DNA hel 96.1 0.026 5.7E-07 57.1 9.1 82 286-367 309-392 (681)
243 PRK14964 DNA polymerase III su 96.1 0.0076 1.6E-07 57.5 4.9 38 9-46 17-57 (491)
244 PRK05707 DNA polymerase III su 96.1 0.035 7.5E-07 50.6 9.0 42 5-46 3-44 (328)
245 PRK13709 conjugal transfer nic 96.1 0.034 7.5E-07 61.0 10.2 65 5-72 967-1032(1747)
246 PRK14087 dnaA chromosomal repl 96.1 0.095 2.1E-06 50.1 11.9 49 25-76 142-190 (450)
247 PF02456 Adeno_IVa2: Adenoviru 96.1 0.01 2.2E-07 51.7 4.9 39 27-70 90-131 (369)
248 PLN03025 replication factor C 96.1 0.031 6.7E-07 51.0 8.4 21 25-45 35-55 (319)
249 PF00448 SRP54: SRP54-type pro 96.1 0.043 9.4E-07 45.9 8.6 57 27-89 4-61 (196)
250 COG1474 CDC6 Cdc6-related prot 96.0 0.04 8.7E-07 50.9 9.0 45 6-51 21-68 (366)
251 PF05621 TniB: Bacterial TniB 96.0 0.052 1.1E-06 47.9 9.1 16 25-40 62-77 (302)
252 cd01120 RecA-like_NTPases RecA 95.9 0.088 1.9E-06 42.5 9.9 39 27-69 2-40 (165)
253 PRK05642 DNA replication initi 95.9 0.063 1.4E-06 46.5 9.1 36 25-64 46-81 (234)
254 TIGR02760 TraI_TIGR conjugativ 95.9 0.055 1.2E-06 61.0 10.6 65 5-75 429-493 (1960)
255 PRK00149 dnaA chromosomal repl 95.9 0.06 1.3E-06 51.8 9.7 44 25-71 149-192 (450)
256 PF14617 CMS1: U3-containing 9 95.8 0.024 5.1E-07 48.9 6.2 86 56-163 126-212 (252)
257 TIGR02881 spore_V_K stage V sp 95.8 0.024 5.3E-07 50.0 6.5 20 25-44 43-62 (261)
258 PRK14086 dnaA chromosomal repl 95.8 0.087 1.9E-06 51.6 10.5 45 25-72 315-359 (617)
259 PRK11823 DNA repair protein Ra 95.8 0.055 1.2E-06 51.6 9.1 61 14-79 69-130 (446)
260 PRK14962 DNA polymerase III su 95.8 0.04 8.8E-07 52.8 8.2 21 26-46 38-58 (472)
261 COG2256 MGS1 ATPase related to 95.8 0.045 9.7E-07 49.8 7.8 19 25-43 49-67 (436)
262 PF01695 IstB_IS21: IstB-like 95.8 0.025 5.4E-07 46.6 5.8 48 19-71 42-89 (178)
263 PRK14961 DNA polymerase III su 95.8 0.011 2.3E-07 55.1 4.0 37 9-45 20-59 (363)
264 COG0593 DnaA ATPase involved i 95.7 0.1 2.2E-06 48.4 10.2 40 24-65 113-152 (408)
265 PRK14963 DNA polymerase III su 95.7 0.021 4.5E-07 55.2 6.0 38 9-46 18-58 (504)
266 PHA03333 putative ATPase subun 95.7 0.14 3.1E-06 50.3 11.4 78 2-83 166-243 (752)
267 TIGR00643 recG ATP-dependent D 95.7 0.047 1E-06 54.8 8.7 82 286-367 283-366 (630)
268 PRK14960 DNA polymerase III su 95.7 0.011 2.3E-07 58.0 3.8 38 9-46 19-59 (702)
269 cd00984 DnaB_C DnaB helicase C 95.6 0.12 2.5E-06 45.1 10.1 49 15-66 4-52 (242)
270 TIGR00362 DnaA chromosomal rep 95.6 0.13 2.8E-06 48.8 11.0 38 25-64 137-174 (405)
271 PRK07003 DNA polymerase III su 95.6 0.022 4.8E-07 56.7 5.7 38 9-46 20-60 (830)
272 PRK14958 DNA polymerase III su 95.6 0.015 3.3E-07 56.3 4.5 38 9-46 20-60 (509)
273 PRK07994 DNA polymerase III su 95.6 0.026 5.7E-07 55.8 6.1 38 9-46 20-60 (647)
274 PRK09111 DNA polymerase III su 95.6 0.019 4.1E-07 56.6 5.1 39 9-47 28-69 (598)
275 PRK08769 DNA polymerase III su 95.5 0.043 9.3E-07 49.6 6.9 44 3-46 2-48 (319)
276 TIGR02928 orc1/cdc6 family rep 95.5 0.034 7.4E-07 51.9 6.6 42 7-49 20-64 (365)
277 PRK05703 flhF flagellar biosyn 95.5 0.079 1.7E-06 50.1 9.0 37 24-63 221-258 (424)
278 COG1444 Predicted P-loop ATPas 95.5 0.11 2.3E-06 52.0 10.0 78 7-86 213-291 (758)
279 COG2255 RuvB Holliday junction 95.5 0.059 1.3E-06 46.7 7.1 19 25-43 53-71 (332)
280 PRK06067 flagellar accessory p 95.5 0.11 2.3E-06 45.1 9.1 63 12-79 12-75 (234)
281 PRK14088 dnaA chromosomal repl 95.5 0.15 3.2E-06 48.7 10.6 38 25-64 131-168 (440)
282 PRK14873 primosome assembly pr 95.4 0.12 2.6E-06 51.8 10.2 94 272-367 171-266 (665)
283 PRK14959 DNA polymerase III su 95.4 0.017 3.8E-07 56.5 4.3 22 25-46 39-60 (624)
284 PRK14955 DNA polymerase III su 95.4 0.035 7.6E-07 52.3 6.3 38 9-46 20-60 (397)
285 PTZ00112 origin recognition co 95.4 0.1 2.2E-06 52.9 9.4 38 7-44 760-801 (1164)
286 PRK08533 flagellar accessory p 95.4 0.13 2.8E-06 44.4 9.2 54 21-79 21-74 (230)
287 PRK14952 DNA polymerase III su 95.4 0.022 4.7E-07 55.9 4.8 38 9-46 17-57 (584)
288 PHA02544 44 clamp loader, smal 95.4 0.09 2E-06 48.0 8.7 26 152-177 100-125 (316)
289 cd01122 GP4d_helicase GP4d_hel 95.3 0.12 2.5E-06 46.1 9.1 54 20-77 26-79 (271)
290 PRK05896 DNA polymerase III su 95.3 0.018 3.8E-07 56.2 4.0 38 9-46 20-60 (605)
291 PRK14949 DNA polymerase III su 95.3 0.029 6.4E-07 56.9 5.6 37 9-45 20-59 (944)
292 PF06733 DEAD_2: DEAD_2; Inte 95.3 0.0081 1.8E-07 49.4 1.4 51 117-167 109-160 (174)
293 cd01121 Sms Sms (bacterial rad 95.3 0.093 2E-06 48.6 8.3 52 22-78 80-131 (372)
294 PF03796 DnaB_C: DnaB-like hel 95.3 0.12 2.6E-06 45.6 8.8 52 13-67 8-59 (259)
295 COG3973 Superfamily I DNA and 95.3 0.061 1.3E-06 51.5 7.0 57 23-79 225-283 (747)
296 TIGR03420 DnaA_homol_Hda DnaA 95.2 0.17 3.8E-06 43.5 9.6 23 23-45 37-59 (226)
297 PRK08691 DNA polymerase III su 95.2 0.021 4.6E-07 56.4 4.2 38 9-46 20-60 (709)
298 PRK14974 cell division protein 95.2 0.21 4.6E-06 45.5 10.3 35 26-64 142-176 (336)
299 PRK14965 DNA polymerase III su 95.2 0.038 8.2E-07 54.6 5.9 37 9-45 20-59 (576)
300 PRK11889 flhF flagellar biosyn 95.2 0.11 2.4E-06 47.9 8.3 35 25-63 242-276 (436)
301 KOG0738 AAA+-type ATPase [Post 95.2 0.043 9.3E-07 49.6 5.6 39 25-71 246-284 (491)
302 PRK14957 DNA polymerase III su 95.2 0.041 8.9E-07 53.5 6.0 38 9-46 20-60 (546)
303 COG1110 Reverse gyrase [DNA re 95.2 0.072 1.6E-06 54.1 7.7 72 277-349 115-190 (1187)
304 TIGR02760 TraI_TIGR conjugativ 95.1 0.092 2E-06 59.2 9.1 64 4-72 1018-1084(1960)
305 PRK13342 recombination factor 95.1 0.086 1.9E-06 50.0 7.8 19 25-43 37-55 (413)
306 PRK06835 DNA replication prote 95.1 0.035 7.6E-07 50.4 4.9 44 24-72 183-226 (329)
307 KOG0739 AAA+-type ATPase [Post 95.1 0.1 2.2E-06 45.5 7.3 46 25-78 167-212 (439)
308 TIGR00767 rho transcription te 95.1 0.03 6.4E-07 51.6 4.4 26 17-42 161-186 (415)
309 PRK00411 cdc6 cell division co 95.1 0.081 1.7E-06 50.0 7.6 36 8-43 36-74 (394)
310 COG1219 ClpX ATP-dependent pro 95.1 0.018 3.8E-07 50.6 2.8 21 23-43 96-116 (408)
311 PRK12323 DNA polymerase III su 95.0 0.032 7E-07 54.6 4.7 38 9-46 20-60 (700)
312 PRK04195 replication factor C 95.0 0.12 2.5E-06 50.2 8.6 20 24-43 39-58 (482)
313 COG4626 Phage terminase-like p 95.0 0.29 6.2E-06 46.8 10.7 78 5-82 61-144 (546)
314 TIGR03015 pepcterm_ATPase puta 95.0 0.22 4.7E-06 44.2 9.8 36 7-42 25-61 (269)
315 PF13177 DNA_pol3_delta2: DNA 95.0 0.11 2.4E-06 42.0 7.1 40 10-49 2-44 (162)
316 PRK14950 DNA polymerase III su 94.9 0.049 1.1E-06 54.0 6.0 37 9-45 20-59 (585)
317 PRK13833 conjugal transfer pro 94.9 0.058 1.3E-06 48.7 5.9 58 6-68 129-186 (323)
318 PF06745 KaiC: KaiC; InterPro 94.9 0.048 1E-06 47.1 5.2 62 14-79 8-70 (226)
319 PRK05580 primosome assembly pr 94.9 0.18 3.9E-06 51.1 9.7 78 287-367 190-267 (679)
320 PRK05563 DNA polymerase III su 94.9 0.041 8.9E-07 54.1 5.1 38 9-46 20-60 (559)
321 KOG2028 ATPase related to the 94.8 0.079 1.7E-06 47.5 6.2 45 25-73 163-207 (554)
322 KOG0991 Replication factor C, 94.8 0.13 2.8E-06 43.2 6.9 22 25-46 49-70 (333)
323 TIGR00580 mfd transcription-re 94.8 0.16 3.6E-06 52.9 9.3 81 286-366 499-581 (926)
324 PRK07764 DNA polymerase III su 94.7 0.051 1.1E-06 55.7 5.5 39 9-47 19-60 (824)
325 PF05127 Helicase_RecD: Helica 94.7 0.0036 7.8E-08 50.8 -2.2 52 28-82 1-52 (177)
326 PRK13894 conjugal transfer ATP 94.7 0.064 1.4E-06 48.6 5.4 58 6-68 133-190 (319)
327 PHA02533 17 large terminase pr 94.7 0.17 3.7E-06 49.3 8.7 71 5-81 59-129 (534)
328 TIGR00595 priA primosomal prot 94.7 0.22 4.7E-06 48.5 9.4 78 286-366 24-101 (505)
329 PRK06871 DNA polymerase III su 94.6 0.043 9.4E-07 49.6 4.1 41 6-46 3-46 (325)
330 COG1198 PriA Primosomal protei 94.5 0.17 3.6E-06 50.8 8.4 93 270-365 226-320 (730)
331 TIGR03877 thermo_KaiC_1 KaiC d 94.5 0.079 1.7E-06 46.0 5.6 62 13-79 9-71 (237)
332 PRK05973 replicative DNA helic 94.5 0.11 2.5E-06 44.6 6.3 58 17-79 57-114 (237)
333 PRK12422 chromosomal replicati 94.5 0.22 4.9E-06 47.5 8.9 36 25-64 142-177 (445)
334 TIGR01547 phage_term_2 phage t 94.5 0.2 4.3E-06 47.4 8.6 58 27-85 4-62 (396)
335 PRK14951 DNA polymerase III su 94.5 0.069 1.5E-06 52.7 5.5 38 9-46 20-60 (618)
336 KOG0701 dsRNA-specific nucleas 94.5 0.025 5.4E-07 60.7 2.6 95 288-384 293-398 (1606)
337 COG4962 CpaF Flp pilus assembl 94.4 0.087 1.9E-06 47.2 5.4 60 3-70 155-214 (355)
338 TIGR02655 circ_KaiC circadian 94.4 0.097 2.1E-06 50.7 6.3 61 14-79 252-313 (484)
339 PRK09183 transposase/IS protei 94.3 0.58 1.3E-05 41.2 10.6 46 21-71 99-144 (259)
340 PF13173 AAA_14: AAA domain 94.3 0.42 9.1E-06 36.9 8.7 18 24-41 2-19 (128)
341 COG1200 RecG RecG-like helicas 94.3 0.25 5.4E-06 48.4 8.7 90 277-366 300-392 (677)
342 PRK12727 flagellar biosynthesi 94.3 0.2 4.4E-06 48.1 8.0 26 22-47 348-373 (559)
343 TIGR02782 TrbB_P P-type conjug 94.3 0.12 2.6E-06 46.5 6.2 58 6-68 117-174 (299)
344 PRK14954 DNA polymerase III su 94.2 0.092 2E-06 52.0 5.9 38 9-46 20-60 (620)
345 PRK09376 rho transcription ter 94.2 0.17 3.6E-06 46.7 7.0 23 19-41 164-186 (416)
346 KOG1807 Helicases [Replication 94.2 0.075 1.6E-06 52.2 5.0 69 6-78 379-449 (1025)
347 PRK07993 DNA polymerase III su 94.2 0.05 1.1E-06 49.7 3.7 41 5-45 2-45 (334)
348 PF06309 Torsin: Torsin; Inte 94.2 0.46 1E-05 36.1 8.2 51 29-80 58-113 (127)
349 PRK14969 DNA polymerase III su 94.2 0.041 8.9E-07 53.7 3.3 38 9-46 20-60 (527)
350 PRK10689 transcription-repair 94.1 0.25 5.5E-06 52.8 9.1 80 286-365 648-729 (1147)
351 PRK00080 ruvB Holliday junctio 94.1 0.27 5.9E-06 45.1 8.4 18 25-42 52-69 (328)
352 TIGR03878 thermo_KaiC_2 KaiC d 94.1 0.18 4E-06 44.4 7.0 39 21-63 33-71 (259)
353 PRK06090 DNA polymerase III su 94.1 0.35 7.7E-06 43.7 8.8 42 5-46 3-47 (319)
354 PRK06647 DNA polymerase III su 94.0 0.062 1.3E-06 52.7 4.2 38 9-46 20-60 (563)
355 COG1702 PhoH Phosphate starvat 94.0 0.064 1.4E-06 47.8 3.9 52 7-64 130-181 (348)
356 PRK14948 DNA polymerase III su 94.0 0.06 1.3E-06 53.5 4.0 38 9-46 20-60 (620)
357 PTZ00293 thymidine kinase; Pro 93.9 0.22 4.8E-06 41.8 6.7 40 24-67 4-43 (211)
358 PRK07133 DNA polymerase III su 93.9 0.079 1.7E-06 53.0 4.7 37 9-45 22-61 (725)
359 PRK08699 DNA polymerase III su 93.8 0.79 1.7E-05 41.8 10.7 42 6-47 2-44 (325)
360 TIGR02784 addA_alphas double-s 93.8 0.26 5.7E-06 53.3 8.8 131 24-161 10-142 (1141)
361 PRK08451 DNA polymerase III su 93.7 0.09 1.9E-06 50.9 4.6 38 9-46 18-58 (535)
362 PRK06305 DNA polymerase III su 93.7 0.12 2.6E-06 49.4 5.5 38 9-46 21-61 (451)
363 PRK14723 flhF flagellar biosyn 93.7 0.52 1.1E-05 47.7 9.9 24 24-47 185-208 (767)
364 PRK06904 replicative DNA helic 93.6 0.81 1.8E-05 44.1 10.9 59 15-77 212-270 (472)
365 PRK12724 flagellar biosynthesi 93.6 0.4 8.6E-06 44.8 8.4 35 26-63 225-259 (432)
366 TIGR02397 dnaX_nterm DNA polym 93.6 0.19 4.2E-06 46.7 6.6 35 9-43 18-55 (355)
367 PRK12726 flagellar biosynthesi 93.6 0.3 6.6E-06 44.9 7.4 36 24-63 206-241 (407)
368 PRK14953 DNA polymerase III su 93.5 0.092 2E-06 50.6 4.3 37 9-45 20-59 (486)
369 TIGR02640 gas_vesic_GvpN gas v 93.5 0.063 1.4E-06 47.4 3.0 37 7-43 4-40 (262)
370 cd01128 rho_factor Transcripti 93.4 0.18 3.8E-06 43.9 5.6 22 19-40 11-32 (249)
371 KOG1132 Helicase of the DEAD s 93.4 1.4 3E-05 44.5 12.0 110 287-397 561-723 (945)
372 TIGR02639 ClpA ATP-dependent C 93.3 0.27 5.9E-06 50.4 7.6 24 24-47 203-226 (731)
373 KOG0741 AAA+-type ATPase [Post 93.3 0.31 6.7E-06 46.2 7.1 17 25-41 257-273 (744)
374 PRK14971 DNA polymerase III su 93.3 0.15 3.3E-06 50.7 5.5 38 9-46 21-61 (614)
375 cd01130 VirB11-like_ATPase Typ 93.2 0.22 4.8E-06 41.4 5.7 33 5-40 9-41 (186)
376 PRK09112 DNA polymerase III su 93.2 0.2 4.4E-06 46.1 5.8 38 9-46 27-67 (351)
377 PRK12608 transcription termina 93.1 0.34 7.3E-06 44.5 7.0 24 20-43 129-152 (380)
378 COG0210 UvrD Superfamily I DNA 93.1 0.21 4.6E-06 50.7 6.5 71 5-81 2-72 (655)
379 PRK04328 hypothetical protein; 93.1 0.2 4.4E-06 43.8 5.5 62 13-79 11-73 (249)
380 PF05876 Terminase_GpA: Phage 93.1 0.09 1.9E-06 51.7 3.6 72 5-81 16-88 (557)
381 PRK07940 DNA polymerase III su 93.1 0.083 1.8E-06 49.4 3.2 22 25-46 37-58 (394)
382 PRK06964 DNA polymerase III su 93.1 0.3 6.4E-06 44.7 6.7 41 6-46 2-43 (342)
383 PRK13341 recombination factor 93.0 0.42 9E-06 48.5 8.2 19 25-43 53-71 (725)
384 PRK14970 DNA polymerase III su 93.0 0.21 4.5E-06 46.7 5.8 35 9-43 21-58 (367)
385 TIGR03600 phage_DnaB phage rep 93.0 1 2.2E-05 42.9 10.6 50 13-65 183-232 (421)
386 KOG1513 Nuclear helicase MOP-3 92.9 0.054 1.2E-06 53.3 1.8 63 333-395 850-921 (1300)
387 COG0467 RAD55 RecA-superfamily 92.9 0.24 5.1E-06 43.8 5.7 55 21-80 20-74 (260)
388 PF10593 Z1: Z1 domain; Inter 92.8 0.9 2E-05 39.3 9.0 103 299-406 95-202 (239)
389 COG0542 clpA ATP-binding subun 92.8 0.29 6.3E-06 49.3 6.6 17 25-41 522-538 (786)
390 COG2804 PulE Type II secretory 92.8 0.21 4.6E-06 47.2 5.4 42 7-51 243-284 (500)
391 PRK08840 replicative DNA helic 92.7 1.2 2.7E-05 42.8 10.6 58 15-76 208-265 (464)
392 PRK07471 DNA polymerase III su 92.7 0.22 4.7E-06 46.2 5.3 39 9-47 23-64 (365)
393 KOG0344 ATP-dependent RNA heli 92.6 1.4 2.9E-05 42.4 10.3 101 33-163 366-467 (593)
394 COG1111 MPH1 ERCC4-like helica 92.6 0.92 2E-05 42.8 9.1 132 281-418 53-195 (542)
395 PRK06995 flhF flagellar biosyn 92.6 0.64 1.4E-05 44.6 8.4 25 24-48 256-280 (484)
396 COG1197 Mfd Transcription-repa 92.6 0.74 1.6E-05 48.2 9.3 79 286-364 642-722 (1139)
397 PF01443 Viral_helicase1: Vira 92.6 0.08 1.7E-06 45.9 2.4 14 27-40 1-14 (234)
398 TIGR02012 tigrfam_recA protein 92.6 0.4 8.7E-06 43.3 6.7 55 13-71 42-98 (321)
399 cd01129 PulE-GspE PulE/GspE Th 92.6 0.3 6.4E-06 43.1 5.8 34 6-41 64-97 (264)
400 PF12846 AAA_10: AAA-like doma 92.5 0.23 5E-06 44.9 5.3 42 24-69 1-42 (304)
401 CHL00095 clpC Clp protease ATP 92.4 0.28 6E-06 51.1 6.3 35 9-43 513-558 (821)
402 KOG0744 AAA+-type ATPase [Post 92.4 0.2 4.4E-06 44.3 4.4 71 24-95 177-260 (423)
403 PRK08058 DNA polymerase III su 92.3 0.14 2.9E-06 47.0 3.5 42 5-46 6-50 (329)
404 PRK14721 flhF flagellar biosyn 92.3 0.79 1.7E-05 43.2 8.5 64 23-89 190-253 (420)
405 cd00983 recA RecA is a bacter 92.3 0.46 1E-05 43.0 6.7 55 13-71 42-98 (325)
406 TIGR00678 holB DNA polymerase 92.2 0.24 5.1E-06 41.3 4.6 22 25-46 15-36 (188)
407 PRK13851 type IV secretion sys 92.2 0.27 5.9E-06 45.0 5.2 41 23-68 161-201 (344)
408 TIGR00416 sms DNA repair prote 92.2 0.62 1.3E-05 44.7 7.8 53 21-78 91-143 (454)
409 TIGR03881 KaiC_arch_4 KaiC dom 92.1 0.48 1E-05 40.9 6.6 61 13-78 8-69 (229)
410 KOG0745 Putative ATP-dependent 92.1 0.12 2.6E-06 47.6 2.7 21 23-43 225-245 (564)
411 TIGR03880 KaiC_arch_3 KaiC dom 92.1 0.51 1.1E-05 40.5 6.6 61 14-79 5-66 (224)
412 COG0513 SrmB Superfamily II DN 92.0 0.59 1.3E-05 45.7 7.6 73 290-366 102-182 (513)
413 KOG0742 AAA+-type ATPase [Post 91.8 0.27 5.9E-06 45.0 4.6 16 25-40 385-400 (630)
414 TIGR03345 VI_ClpV1 type VI sec 91.8 0.59 1.3E-05 48.6 7.7 36 10-45 192-229 (852)
415 PRK11034 clpA ATP-dependent Cl 91.8 0.4 8.7E-06 48.9 6.4 17 26-42 490-506 (758)
416 PRK07399 DNA polymerase III su 91.8 0.87 1.9E-05 41.3 8.0 38 9-46 8-48 (314)
417 PRK13900 type IV secretion sys 91.7 0.22 4.8E-06 45.4 4.2 18 23-40 159-176 (332)
418 COG1074 RecB ATP-dependent exo 91.7 0.37 8.1E-06 51.9 6.4 60 23-82 15-75 (1139)
419 PRK08506 replicative DNA helic 91.7 1.6 3.4E-05 42.3 10.1 59 14-77 182-240 (472)
420 PRK00771 signal recognition pa 91.7 1 2.2E-05 42.8 8.5 34 26-63 97-130 (437)
421 PRK08939 primosomal protein Dn 91.7 0.36 7.8E-06 43.5 5.4 36 24-63 156-191 (306)
422 PRK08006 replicative DNA helic 91.7 2.1 4.6E-05 41.2 10.9 48 15-65 215-262 (471)
423 PF13481 AAA_25: AAA domain; P 91.6 0.51 1.1E-05 39.4 6.0 64 16-80 23-93 (193)
424 TIGR00665 DnaB replicative DNA 91.6 2 4.4E-05 41.2 10.8 60 14-77 185-244 (434)
425 TIGR02639 ClpA ATP-dependent C 91.5 0.61 1.3E-05 47.9 7.5 18 26-43 486-503 (731)
426 PRK11034 clpA ATP-dependent Cl 91.5 0.82 1.8E-05 46.8 8.2 24 23-46 206-229 (758)
427 PF01935 DUF87: Domain of unkn 91.4 0.39 8.4E-06 41.5 5.2 42 24-68 23-64 (229)
428 TIGR03346 chaperone_ClpB ATP-d 91.4 0.59 1.3E-05 48.9 7.3 22 24-45 194-215 (852)
429 PRK05748 replicative DNA helic 91.3 2.3 4.9E-05 41.0 10.8 59 14-76 193-251 (448)
430 CHL00095 clpC Clp protease ATP 91.3 0.84 1.8E-05 47.6 8.3 24 24-47 200-223 (821)
431 PRK08903 DnaA regulatory inact 91.3 0.51 1.1E-05 40.7 5.8 37 23-63 41-77 (227)
432 TIGR02237 recomb_radB DNA repa 91.3 0.31 6.8E-06 41.3 4.5 39 23-65 11-49 (209)
433 TIGR03345 VI_ClpV1 type VI sec 91.3 0.93 2E-05 47.2 8.5 18 26-43 598-615 (852)
434 COG3972 Superfamily I DNA and 91.2 1.2 2.6E-05 42.0 8.1 51 28-80 180-230 (660)
435 KOG1806 DEAD box containing he 91.2 0.35 7.6E-06 49.3 5.0 70 4-79 737-806 (1320)
436 PRK13531 regulatory ATPase Rav 91.1 0.22 4.8E-06 47.4 3.6 33 9-41 24-56 (498)
437 TIGR02655 circ_KaiC circadian 91.1 0.66 1.4E-05 45.1 6.9 64 13-80 9-73 (484)
438 cd01126 TraG_VirD4 The TraG/Tr 91.1 0.23 4.9E-06 46.7 3.7 56 26-91 1-56 (384)
439 cd01394 radB RadB. The archaea 91.0 0.49 1.1E-05 40.5 5.4 47 13-63 7-54 (218)
440 COG2805 PilT Tfp pilus assembl 91.0 0.35 7.5E-06 42.5 4.3 27 25-52 126-152 (353)
441 PRK09354 recA recombinase A; P 91.0 0.73 1.6E-05 42.1 6.6 54 13-70 47-102 (349)
442 PRK10436 hypothetical protein; 91.0 0.43 9.3E-06 45.7 5.4 40 7-49 203-242 (462)
443 KOG0058 Peptide exporter, ABC 90.9 0.35 7.7E-06 47.7 4.8 160 13-181 483-651 (716)
444 PRK09361 radB DNA repair and r 90.9 0.52 1.1E-05 40.6 5.4 49 13-65 11-60 (225)
445 PRK14701 reverse gyrase; Provi 90.8 0.91 2E-05 50.5 8.2 64 286-349 121-187 (1638)
446 CHL00181 cbbX CbbX; Provisiona 90.6 0.53 1.1E-05 42.1 5.4 24 24-47 59-82 (287)
447 PRK08760 replicative DNA helic 90.6 2.2 4.9E-05 41.2 9.9 61 15-79 220-280 (476)
448 PHA00350 putative assembly pro 90.5 0.77 1.7E-05 42.7 6.4 23 27-49 4-27 (399)
449 TIGR00064 ftsY signal recognit 90.5 2.3 5E-05 37.7 9.2 35 25-63 73-107 (272)
450 TIGR00959 ffh signal recogniti 90.5 2.8 6E-05 39.8 10.2 35 26-63 101-135 (428)
451 TIGR02524 dot_icm_DotB Dot/Icm 90.4 0.43 9.4E-06 44.1 4.7 27 23-50 133-159 (358)
452 PHA03368 DNA packaging termina 90.4 3.7 8E-05 40.8 10.9 56 24-81 254-309 (738)
453 PF01078 Mg_chelatase: Magnesi 90.4 0.14 3E-06 42.7 1.4 31 10-40 8-38 (206)
454 PF02534 T4SS-DNA_transf: Type 90.3 0.41 8.8E-06 46.5 4.8 49 25-79 45-93 (469)
455 PRK06731 flhF flagellar biosyn 90.2 2.2 4.8E-05 37.7 8.7 23 25-47 76-98 (270)
456 cd01131 PilT Pilus retraction 90.1 0.48 1E-05 39.8 4.5 36 26-64 3-38 (198)
457 TIGR00763 lon ATP-dependent pr 90.0 1.4 3E-05 45.7 8.4 18 24-41 347-364 (775)
458 cd03115 SRP The signal recogni 90.0 2.5 5.4E-05 34.5 8.6 33 27-63 3-35 (173)
459 PHA02244 ATPase-like protein 89.9 0.42 9.2E-06 43.8 4.1 25 17-41 112-136 (383)
460 PRK10865 protein disaggregatio 89.9 0.64 1.4E-05 48.5 6.0 18 26-43 600-617 (857)
461 PRK10867 signal recognition pa 89.9 4.2 9.1E-05 38.6 10.8 34 27-63 103-136 (433)
462 TIGR03754 conj_TOL_TraD conjug 89.9 0.75 1.6E-05 45.6 6.1 41 24-68 180-220 (643)
463 COG0470 HolB ATPase involved i 89.8 2.7 5.8E-05 38.4 9.6 24 24-47 23-47 (325)
464 KOG0298 DEAD box-containing he 89.7 0.58 1.3E-05 49.0 5.3 101 286-393 1220-1320(1394)
465 PRK13897 type IV secretion sys 89.7 0.38 8.2E-06 47.6 4.0 58 24-91 158-215 (606)
466 cd00544 CobU Adenosylcobinamid 89.7 0.71 1.5E-05 37.6 5.0 46 27-79 2-47 (169)
467 PF03237 Terminase_6: Terminas 89.7 3.6 7.8E-05 38.3 10.6 42 28-71 1-42 (384)
468 COG0552 FtsY Signal recognitio 89.7 3.7 8.1E-05 36.9 9.6 56 27-89 142-199 (340)
469 TIGR02880 cbbX_cfxQ probable R 89.6 0.56 1.2E-05 42.0 4.6 20 25-44 59-78 (284)
470 PF00437 T2SE: Type II/IV secr 89.4 0.36 7.7E-06 42.9 3.3 43 22-68 125-167 (270)
471 PF13191 AAA_16: AAA ATPase do 89.4 0.62 1.3E-05 38.5 4.6 44 7-51 5-50 (185)
472 PRK11331 5-methylcytosine-spec 89.3 0.37 8.1E-06 45.4 3.4 30 14-43 184-213 (459)
473 PRK11634 ATP-dependent RNA hel 89.3 3.4 7.5E-05 41.6 10.4 77 286-366 73-157 (629)
474 TIGR03743 SXT_TraD conjugative 89.3 0.92 2E-05 45.4 6.3 52 24-79 176-229 (634)
475 COG2874 FlaH Predicted ATPases 89.2 2.4 5.1E-05 35.5 7.5 37 24-64 28-64 (235)
476 PF01580 FtsK_SpoIIIE: FtsK/Sp 89.2 0.54 1.2E-05 39.8 4.1 28 23-50 37-64 (205)
477 TIGR02533 type_II_gspE general 89.1 0.74 1.6E-05 44.5 5.4 40 7-49 227-266 (486)
478 cd01127 TrwB Bacterial conjuga 89.1 0.61 1.3E-05 44.2 4.8 44 24-71 42-85 (410)
479 PF08423 Rad51: Rad51; InterP 89.1 0.68 1.5E-05 40.6 4.8 40 28-67 42-83 (256)
480 TIGR02538 type_IV_pilB type IV 89.1 0.7 1.5E-05 45.8 5.3 40 7-49 301-340 (564)
481 PRK06321 replicative DNA helic 89.0 5.2 0.00011 38.6 11.0 49 14-65 216-264 (472)
482 PRK14729 miaA tRNA delta(2)-is 89.0 0.43 9.3E-06 42.7 3.4 22 24-45 4-25 (300)
483 PRK07004 replicative DNA helic 89.0 3.1 6.8E-05 40.1 9.5 48 15-65 204-251 (460)
484 PRK09302 circadian clock prote 88.9 1.2 2.5E-05 43.8 6.8 64 12-79 18-82 (509)
485 COG4098 comFA Superfamily II D 88.9 3.5 7.6E-05 37.1 8.8 95 45-167 294-388 (441)
486 PF00004 AAA: ATPase family as 88.9 0.45 9.8E-06 36.7 3.2 17 27-43 1-17 (132)
487 PF01745 IPT: Isopentenyl tran 88.9 0.46 1E-05 39.6 3.3 20 27-46 4-23 (233)
488 TIGR01054 rgy reverse gyrase. 88.8 1.4 3E-05 47.6 7.6 81 286-366 120-207 (1171)
489 KOG0331 ATP-dependent RNA heli 88.5 3.7 8E-05 39.5 9.4 74 55-157 340-414 (519)
490 PF07728 AAA_5: AAA domain (dy 88.5 0.42 9.1E-06 37.4 2.8 18 26-43 1-18 (139)
491 PF13207 AAA_17: AAA domain; P 88.5 0.38 8.1E-06 36.6 2.5 17 27-43 2-18 (121)
492 TIGR02525 plasmid_TraJ plasmid 88.4 0.79 1.7E-05 42.5 4.9 26 24-50 149-174 (372)
493 PRK12402 replication factor C 88.4 0.43 9.3E-06 44.0 3.2 37 10-46 20-58 (337)
494 KOG1513 Nuclear helicase MOP-3 88.3 0.51 1.1E-05 46.9 3.7 79 5-87 264-348 (1300)
495 PHA00729 NTP-binding motif con 88.2 1.3 2.7E-05 37.8 5.6 23 25-47 18-40 (226)
496 PHA00012 I assembly protein 88.2 0.98 2.1E-05 40.5 5.0 26 27-52 4-29 (361)
497 PRK09165 replicative DNA helic 88.1 6.1 0.00013 38.5 10.9 63 15-78 208-281 (497)
498 TIGR03819 heli_sec_ATPase heli 88.1 0.99 2.1E-05 41.4 5.3 55 6-68 163-217 (340)
499 PRK09302 circadian clock prote 88.0 1.4 3.1E-05 43.2 6.7 62 13-79 261-323 (509)
500 COG0606 Predicted ATPase with 88.0 0.32 6.9E-06 45.7 2.0 32 9-40 183-214 (490)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-54 Score=369.94 Aligned_cols=360 Identities=35% Similarity=0.525 Sum_probs=318.2
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
.|++.|++.|.+++..++ .|+++|..|.||||||.++++|+++.+...+ ..+.++|++||++|+.|+++.+..++
T Consensus 79 l~~~~PT~IQ~~aiP~~L----~g~dvIglAeTGSGKT~afaLPIl~~LL~~p-~~~~~lVLtPtRELA~QI~e~fe~Lg 153 (476)
T KOG0330|consen 79 LGWKKPTKIQSEAIPVAL----GGRDVIGLAETGSGKTGAFALPILQRLLQEP-KLFFALVLTPTRELAQQIAEQFEALG 153 (476)
T ss_pred hCcCCCchhhhhhcchhh----CCCcEEEEeccCCCchhhhHHHHHHHHHcCC-CCceEEEecCcHHHHHHHHHHHHHhc
Confidence 378999999987766554 5999999999999999999999999998865 55799999999999999999999999
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013826 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
...|+.+.++.|+.....+.... ...|+|+|+||++|+..++....+++..++++|+||
T Consensus 154 ~~iglr~~~lvGG~~m~~q~~~L---------------------~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 154 SGIGLRVAVLVGGMDMMLQANQL---------------------SKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred cccCeEEEEEecCchHHHHHHHh---------------------hcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 99999999999999876665543 455699999999999999988889999999999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc
Q 013826 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 240 (436)
|+.+++..|...+..|+..++. ..+.+++|||++..+.++..
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~--------------------------------------erqt~LfsATMt~kv~kL~r 254 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPR--------------------------------------ERQTFLFSATMTKKVRKLQR 254 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCc--------------------------------------cceEEEEEeecchhhHHHHh
Confidence 9999999999999999988752 34789999999999999998
Q ss_pred cccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEe
Q 013826 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 320 (436)
..+.+|..+...... ..-......+...+...|..+|..+++...+..+||||++...+..++-.|++++ +.+..+
T Consensus 255 asl~~p~~v~~s~ky-~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg---~~a~~L 330 (476)
T KOG0330|consen 255 ASLDNPVKVAVSSKY-QTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLG---FQAIPL 330 (476)
T ss_pred hccCCCeEEeccchh-cchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcC---cceecc
Confidence 888888877655443 3334445667777888899999999999989999999999999999999999988 899999
Q ss_pred ccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhHH
Q 013826 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400 (436)
Q Consensus 321 ~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 400 (436)
||.|+...|...++.|++|.++||+||++.++|+|+|.+++||+||.|.+..+|++|+||.+|.|++|.++.+++..|.+
T Consensus 331 hGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 331 HGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVE 410 (476)
T ss_pred cchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCChhhhhhhhh
Q 013826 401 RFKKLLQKADNDSCPIHSIPSSLIESLRP 429 (436)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (436)
.+.+++.-+.+. .+..++..+.+-.++.
T Consensus 411 ~~qrIE~~~gkk-l~~~~~~~~~~~~l~e 438 (476)
T KOG0330|consen 411 LVQRIEHALGKK-LPEYKVDKNEVMSLNE 438 (476)
T ss_pred HHHHHHHHHhcC-CCccCcchHHHHHHHH
Confidence 999998877544 5555666555544443
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-53 Score=384.79 Aligned_cols=356 Identities=32% Similarity=0.519 Sum_probs=309.8
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHh-----hcCCccEEEEcCCHHHHHHHHHHH
Q 013826 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRDLALQVKDVF 76 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~-----~~~~~~~lil~P~~~l~~q~~~~~ 76 (436)
||+.|+|.|.+.|..+ ..|++++..+.||||||+++++|++..+.+. ...++++|||+||++|+.|+.+.+
T Consensus 110 g~~~PtpIQaq~wp~~----l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~ 185 (519)
T KOG0331|consen 110 GFEKPTPIQAQGWPIA----LSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEA 185 (519)
T ss_pred CCCCCchhhhccccee----ccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHH
Confidence 7999999997765544 4599999999999999999999999888762 235789999999999999999999
Q ss_pred HHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEE
Q 013826 77 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL 156 (436)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~i 156 (436)
..++...++...++.|+.+...+... +.++.+|+|+||++|.++++.+. ..++.+.++
T Consensus 186 ~~~~~~~~~~~~cvyGG~~~~~Q~~~---------------------l~~gvdiviaTPGRl~d~le~g~-~~l~~v~yl 243 (519)
T KOG0331|consen 186 REFGKSLRLRSTCVYGGAPKGPQLRD---------------------LERGVDVVIATPGRLIDLLEEGS-LNLSRVTYL 243 (519)
T ss_pred HHHcCCCCccEEEEeCCCCccHHHHH---------------------HhcCCcEEEeCChHHHHHHHcCC-ccccceeEE
Confidence 99998888889999999988777543 44567999999999999999865 789999999
Q ss_pred EEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCch
Q 013826 157 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236 (436)
Q Consensus 157 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 236 (436)
|+|||+.|++.+|...++.|+..+.. +..|.++.|||.+..+.
T Consensus 244 VLDEADrMldmGFe~qI~~Il~~i~~-------------------------------------~~rQtlm~saTwp~~v~ 286 (519)
T KOG0331|consen 244 VLDEADRMLDMGFEPQIRKILSQIPR-------------------------------------PDRQTLMFSATWPKEVR 286 (519)
T ss_pred EeccHHhhhccccHHHHHHHHHhcCC-------------------------------------CcccEEEEeeeccHHHH
Confidence 99999999999999999999988743 22278999999999999
Q ss_pred hhhccccCCceeeecCCc-cccCCccccceeeeccCcCcHHHHHHHHHhc---CCCcEEEEcCCchhHHHHHHHHhhhcc
Q 013826 237 KLAQLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGE 312 (436)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~lvf~~~~~~~~~~~~~l~~~~~ 312 (436)
.++..++.++..+..... .......+..+........|...+..++... .++|+||||++++.|.+++..++..+
T Consensus 287 ~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~- 365 (519)
T KOG0331|consen 287 QLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKG- 365 (519)
T ss_pred HHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcC-
Confidence 999999999888776644 4445556666666666777877788777665 46799999999999999999999876
Q ss_pred cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEE
Q 013826 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 392 (436)
Q Consensus 313 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~ 392 (436)
.++..+||+.++.+|+.+++.|++|++.|||||++.++|+|+|++++||+|+.|.++.+|+||+||.||.|+.|.+++
T Consensus 366 --~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~t 443 (519)
T KOG0331|consen 366 --WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAIT 443 (519)
T ss_pred --cceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEE
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecchhHHHHHHHHHHhcCCCCCCCCCChhhhhh
Q 013826 393 LLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIES 426 (436)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (436)
|+...+......+.+.+.... +.+++.+.+.
T Consensus 444 fft~~~~~~a~~l~~~l~e~~---q~v~~~l~~~ 474 (519)
T KOG0331|consen 444 FFTSDNAKLARELIKVLREAG---QTVPPDLLEY 474 (519)
T ss_pred EEeHHHHHHHHHHHHHHHHcc---CCCChHHHHH
Confidence 999999999888888886555 5555555544
No 3
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.9e-51 Score=387.77 Aligned_cols=354 Identities=27% Similarity=0.421 Sum_probs=288.2
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh------cCCccEEEEcCCHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------VRCLRALVVLPTRDLALQVKD 74 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~------~~~~~~lil~P~~~l~~q~~~ 74 (436)
+||..|+|+|.+++..++. ++++++.||||||||+++++++++.+.... ..++++||++||++|+.|+.+
T Consensus 26 ~g~~~pt~iQ~~aip~il~----g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~ 101 (423)
T PRK04837 26 KGFHNCTPIQALALPLTLA----GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHA 101 (423)
T ss_pred CCCCCCCHHHHHHHHHHhC----CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHH
Confidence 6899999999998887664 899999999999999999999998876532 134689999999999999999
Q ss_pred HHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCcc
Q 013826 75 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 154 (436)
Q Consensus 75 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~ 154 (436)
.+..+....++.+..+.|+........ .+..+++|+|+||++|.+++.... +.+++++
T Consensus 102 ~~~~l~~~~~~~v~~~~gg~~~~~~~~---------------------~l~~~~~IlV~TP~~l~~~l~~~~-~~l~~v~ 159 (423)
T PRK04837 102 DAEPLAQATGLKLGLAYGGDGYDKQLK---------------------VLESGVDILIGTTGRLIDYAKQNH-INLGAIQ 159 (423)
T ss_pred HHHHHhccCCceEEEEECCCCHHHHHH---------------------HhcCCCCEEEECHHHHHHHHHcCC-ccccccc
Confidence 999998888999999888876554432 233457999999999999887643 6789999
Q ss_pred EEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccC
Q 013826 155 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234 (436)
Q Consensus 155 ~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~ 234 (436)
++|+||||++.+.+|...+..++...... ...+.+++|||+...
T Consensus 160 ~lViDEad~l~~~~f~~~i~~i~~~~~~~------------------------------------~~~~~~l~SAT~~~~ 203 (423)
T PRK04837 160 VVVLDEADRMFDLGFIKDIRWLFRRMPPA------------------------------------NQRLNMLFSATLSYR 203 (423)
T ss_pred EEEEecHHHHhhcccHHHHHHHHHhCCCc------------------------------------cceeEEEEeccCCHH
Confidence 99999999999988888887777665321 122468899999887
Q ss_pred chhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccc
Q 013826 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR 314 (436)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~ 314 (436)
........+.+|..+....... ....+...........+...+..++......++||||++++.|+.+++.|.+.+
T Consensus 204 ~~~~~~~~~~~p~~i~v~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g--- 279 (423)
T PRK04837 204 VRELAFEHMNNPEYVEVEPEQK-TGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADG--- 279 (423)
T ss_pred HHHHHHHHCCCCEEEEEcCCCc-CCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCC---
Confidence 7777766777776554433221 122222233333445567777777777677899999999999999999998776
Q ss_pred eeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEe
Q 013826 315 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394 (436)
Q Consensus 315 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~ 394 (436)
+.+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||+++.|.++..|+||+||+||.|+.|.+++|+
T Consensus 280 ~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~ 359 (423)
T PRK04837 280 HRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLA 359 (423)
T ss_pred CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEe
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhcCCCCCCCCCCh
Q 013826 395 HKDEVKRFKKLLQKADNDSCPIHSIPS 421 (436)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (436)
.+.+...+..+.+.+.. .++..+++.
T Consensus 360 ~~~~~~~~~~i~~~~~~-~~~~~~~~~ 385 (423)
T PRK04837 360 CEEYALNLPAIETYIGH-SIPVSKYDS 385 (423)
T ss_pred CHHHHHHHHHHHHHhCC-CCCCccCCh
Confidence 99988888888666643 344444433
No 4
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.5e-51 Score=394.27 Aligned_cols=356 Identities=28% Similarity=0.462 Sum_probs=289.0
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh----cCCccEEEEcCCHHHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA----VRCLRALVVLPTRDLALQVKDVF 76 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~~lil~P~~~l~~q~~~~~ 76 (436)
+||++|+|+|.+++..++. ++++++++|||||||+++++|++..+.... ..++.+|||+||++|+.|+.+.+
T Consensus 148 ~g~~~pt~iQ~~aip~~l~----G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~ 223 (545)
T PTZ00110 148 AGFTEPTPIQVQGWPIALS----GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQC 223 (545)
T ss_pred CCCCCCCHHHHHHHHHHhc----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHH
Confidence 5899999999999887764 899999999999999999999887765432 23568999999999999999999
Q ss_pred HHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEE
Q 013826 77 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL 156 (436)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~i 156 (436)
..++...++.+....|+.+...+.. .+..+++|+|+||++|.+++.... ..+++++++
T Consensus 224 ~~~~~~~~i~~~~~~gg~~~~~q~~---------------------~l~~~~~IlVaTPgrL~d~l~~~~-~~l~~v~~l 281 (545)
T PTZ00110 224 NKFGASSKIRNTVAYGGVPKRGQIY---------------------ALRRGVEILIACPGRLIDFLESNV-TNLRRVTYL 281 (545)
T ss_pred HHHhcccCccEEEEeCCCCHHHHHH---------------------HHHcCCCEEEECHHHHHHHHHcCC-CChhhCcEE
Confidence 9998877888888888876554432 234567999999999999998744 668899999
Q ss_pred EEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCch
Q 013826 157 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236 (436)
Q Consensus 157 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 236 (436)
|+||||++++.+|...+..++..+. +..+.+++|||++....
T Consensus 282 ViDEAd~mld~gf~~~i~~il~~~~--------------------------------------~~~q~l~~SAT~p~~v~ 323 (545)
T PTZ00110 282 VLDEADRMLDMGFEPQIRKIVSQIR--------------------------------------PDRQTLMWSATWPKEVQ 323 (545)
T ss_pred EeehHHhhhhcchHHHHHHHHHhCC--------------------------------------CCCeEEEEEeCCCHHHH
Confidence 9999999999998888888876543 22478999999987766
Q ss_pred hhhccccC-CceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhhccc
Q 013826 237 KLAQLDLH-HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGEL 313 (436)
Q Consensus 237 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~~~~~l~~~~~~ 313 (436)
.+....+. .+..+............+...........+...+..++... ...++||||++++.|+.+++.|+..+
T Consensus 324 ~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g-- 401 (545)
T PTZ00110 324 SLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDG-- 401 (545)
T ss_pred HHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcC--
Confidence 66655543 34444333222222223333333444556667777777654 46799999999999999999998766
Q ss_pred ceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEE
Q 013826 314 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393 (436)
Q Consensus 314 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 393 (436)
+.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.++.+|+||+||+||.|..|.+++|
T Consensus 402 -~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~ 480 (545)
T PTZ00110 402 -WPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTF 480 (545)
T ss_pred -CcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEE
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecchhHHHHHHHHHHhcCCCCCCCCCChhhhhh
Q 013826 394 LHKDEVKRFKKLLQKADNDSCPIHSIPSSLIES 426 (436)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (436)
+++.+......+.+.+.... +.+++.+.+.
T Consensus 481 ~~~~~~~~~~~l~~~l~~~~---q~vp~~l~~~ 510 (545)
T PTZ00110 481 LTPDKYRLARDLVKVLREAK---QPVPPELEKL 510 (545)
T ss_pred ECcchHHHHHHHHHHHHHcc---CCCCHHHHHH
Confidence 99999888888888876665 5566655544
No 5
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-52 Score=364.67 Aligned_cols=400 Identities=46% Similarity=0.720 Sum_probs=340.4
Q ss_pred CCCCcccchhHHHHHhhhCCCC-----CCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGL-----FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 75 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~-----~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~ 75 (436)
|++..+.|.|..++..+++.+. ...++.+.||||||||++|.+|+.+.+.....+..+++|++|++.|+.|+++.
T Consensus 155 ~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~ 234 (620)
T KOG0350|consen 155 MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDT 234 (620)
T ss_pred hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHH
Confidence 6788999999999888865443 35799999999999999999999999988777888999999999999999999
Q ss_pred HHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccE
Q 013826 76 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY 155 (436)
Q Consensus 76 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~ 155 (436)
|..+....|+.|+...|..+..++..++...++. ...+|+|+||++|.+.+...+.+.++++++
T Consensus 235 f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~----------------~~~DIlVaTPGRLVDHl~~~k~f~Lk~Lrf 298 (620)
T KOG0350|consen 235 FKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPE----------------CRIDILVATPGRLVDHLNNTKSFDLKHLRF 298 (620)
T ss_pred HHHhccCCceEEEecccccchHHHHHHHhcCCCc----------------cccceEEcCchHHHHhccCCCCcchhhceE
Confidence 9999999999999999999998887776654432 124999999999999999888899999999
Q ss_pred EEEehhhHHhhHhHhhhHHHHHhhcccc-----cccccccccccccccccccccccccccccccCCCCccceeeeeeccc
Q 013826 156 LVVDETDRLLREAYQAWLPTVLQLTRSD-----NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230 (436)
Q Consensus 156 iIiDE~h~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat 230 (436)
+|||||+++++..|.+|+..+..++... ..+.+.......+..+... ...+ ....+....+++|||
T Consensus 299 LVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~--------~t~~-~~~~~~l~kL~~sat 369 (620)
T KOG0350|consen 299 LVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSEL--------LTKL-GKLYPPLWKLVFSAT 369 (620)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHH--------Hhhc-CCcCchhHhhhcchh
Confidence 9999999999999999999998887654 2222222222222222111 1111 334466678999999
Q ss_pred cccCchhhhccccCCceeeecC---CccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHH
Q 013826 231 LTQDPNKLAQLDLHHPLFLTTG---ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307 (436)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l 307 (436)
+......+....+..|..+-.. ...+.++..+.++.+......+.-.+...+....-.++|+|+++.+.+.+++..|
T Consensus 370 LsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L 449 (620)
T KOG0350|consen 370 LSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVL 449 (620)
T ss_pred hhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHH
Confidence 9999999999999998554333 4667778888888888888899999999999988999999999999999999999
Q ss_pred h-hhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCC
Q 013826 308 N-HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 386 (436)
Q Consensus 308 ~-~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~ 386 (436)
+ .+......+..+.|.++...|...+++|..|++++|||++++.+|+|+-++++||+|++|.+...|++|+||.+|.|+
T Consensus 450 ~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq 529 (620)
T KOG0350|consen 450 KVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQ 529 (620)
T ss_pred HHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccC
Confidence 9 788888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecchhHHHHHHHHHHhcC-CCCCCCCCChhhhh
Q 013826 387 LGRCFTLLHKDEVKRFKKLLQKADN-DSCPIHSIPSSLIE 425 (436)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 425 (436)
.|.++++.+..+...+.++++.... +++++++++...+.
T Consensus 530 ~G~a~tll~~~~~r~F~klL~~~~~~d~~~i~~~e~~~~~ 569 (620)
T KOG0350|consen 530 DGYAITLLDKHEKRLFSKLLKKTNLWDGVEIQPIEYIFIK 569 (620)
T ss_pred CceEEEeeccccchHHHHHHHHhcccCCcceeecCchHHH
Confidence 9999999999999999999998766 78888887655443
No 6
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-50 Score=390.92 Aligned_cols=363 Identities=26% Similarity=0.414 Sum_probs=293.9
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh------cCCccEEEEcCCHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------VRCLRALVVLPTRDLALQVKD 74 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~------~~~~~~lil~P~~~l~~q~~~ 74 (436)
+||+.|+|+|.+++..++. ++++++.+|||||||+++++++++.+.... ...+++||++||++|+.|+++
T Consensus 27 ~g~~~ptpiQ~~~ip~~l~----G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~ 102 (572)
T PRK04537 27 AGFTRCTPIQALTLPVALP----GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHK 102 (572)
T ss_pred CCCCCCCHHHHHHHHHHhC----CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHH
Confidence 5899999999999887764 899999999999999999999998875421 124689999999999999999
Q ss_pred HHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCcc
Q 013826 75 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 154 (436)
Q Consensus 75 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~ 154 (436)
.+..++...++.+..++|+.....+.. .+..+++|+|+||++|++++.....+.++.++
T Consensus 103 ~~~~l~~~~~i~v~~l~Gg~~~~~q~~---------------------~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~ 161 (572)
T PRK04537 103 DAVKFGADLGLRFALVYGGVDYDKQRE---------------------LLQQGVDVIIATPGRLIDYVKQHKVVSLHACE 161 (572)
T ss_pred HHHHHhccCCceEEEEECCCCHHHHHH---------------------HHhCCCCEEEECHHHHHHHHHhccccchhhee
Confidence 999998888899999999887654432 22345699999999999998875556788999
Q ss_pred EEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccC
Q 013826 155 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234 (436)
Q Consensus 155 ~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~ 234 (436)
++||||||++.+.+|...+..++..+... ...+.+++|||+...
T Consensus 162 ~lViDEAh~lld~gf~~~i~~il~~lp~~------------------------------------~~~q~ll~SATl~~~ 205 (572)
T PRK04537 162 ICVLDEADRMFDLGFIKDIRFLLRRMPER------------------------------------GTRQTLLFSATLSHR 205 (572)
T ss_pred eeEecCHHHHhhcchHHHHHHHHHhcccc------------------------------------cCceEEEEeCCccHH
Confidence 99999999999988888888877765321 123789999999887
Q ss_pred chhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccc
Q 013826 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR 314 (436)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~ 314 (436)
...+....+.++..+....... ....+...........+...+..++......++||||++++.++.+++.|.+.+
T Consensus 206 v~~l~~~~l~~p~~i~v~~~~~-~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g--- 281 (572)
T PRK04537 206 VLELAYEHMNEPEKLVVETETI-TAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHG--- 281 (572)
T ss_pred HHHHHHHHhcCCcEEEeccccc-cccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcC---
Confidence 7777666666664433222211 112233333344455667777787777778899999999999999999998876
Q ss_pred eeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEe
Q 013826 315 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394 (436)
Q Consensus 315 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~ 394 (436)
+.+..+|++++..+|..+++.|++|+.+|||||+++++|+|+|++++||+|+.|.+...|+||+||+||.|..|.+++|+
T Consensus 282 ~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~ 361 (572)
T PRK04537 282 YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFA 361 (572)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEe
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhcCCCCCCCCCChhhhhhhhh
Q 013826 395 HKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRP 429 (436)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (436)
.+.+...+..+.+.+. ..++...+...++..+..
T Consensus 362 ~~~~~~~l~~i~~~~~-~~~~~~~~~~~~~~~~~~ 395 (572)
T PRK04537 362 CERYAMSLPDIEAYIE-QKIPVEPVTAELLTPLPR 395 (572)
T ss_pred cHHHHHHHHHHHHHHc-CCCCccccChhhcccccc
Confidence 9988888888877664 334445555554444433
No 7
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.3e-50 Score=388.57 Aligned_cols=354 Identities=26% Similarity=0.442 Sum_probs=287.2
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHh------hcCCccEEEEcCCHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR------AVRCLRALVVLPTRDLALQVKD 74 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~------~~~~~~~lil~P~~~l~~q~~~ 74 (436)
+||+.|+|+|.+++..++ .++++++.+|||||||++++++++..+... ...++++||++||++|+.|+.+
T Consensus 139 ~g~~~ptpiQ~~aip~il----~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~ 214 (518)
T PLN00206 139 AGYEFPTPIQMQAIPAAL----SGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVED 214 (518)
T ss_pred cCCCCCCHHHHHHHHHHh----cCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHH
Confidence 589999999999988876 489999999999999999999998876532 1245689999999999999999
Q ss_pred HHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCcc
Q 013826 75 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 154 (436)
Q Consensus 75 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~ 154 (436)
.++.+....++.+..+.|+.....+.. .+..+++|+|+||++|.+++.+. ...+++++
T Consensus 215 ~~~~l~~~~~~~~~~~~gG~~~~~q~~---------------------~l~~~~~IiV~TPgrL~~~l~~~-~~~l~~v~ 272 (518)
T PLN00206 215 QAKVLGKGLPFKTALVVGGDAMPQQLY---------------------RIQQGVELIVGTPGRLIDLLSKH-DIELDNVS 272 (518)
T ss_pred HHHHHhCCCCceEEEEECCcchHHHHH---------------------HhcCCCCEEEECHHHHHHHHHcC-Cccchhee
Confidence 999888777788888888776554432 23456799999999999999875 47789999
Q ss_pred EEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccC
Q 013826 155 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234 (436)
Q Consensus 155 ~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~ 234 (436)
++|+||||++.+.+|...+..++..+. ..+.+++|||+++.
T Consensus 273 ~lViDEad~ml~~gf~~~i~~i~~~l~---------------------------------------~~q~l~~SATl~~~ 313 (518)
T PLN00206 273 VLVLDEVDCMLERGFRDQVMQIFQALS---------------------------------------QPQVLLFSATVSPE 313 (518)
T ss_pred EEEeecHHHHhhcchHHHHHHHHHhCC---------------------------------------CCcEEEEEeeCCHH
Confidence 999999999999888887777766542 23689999999888
Q ss_pred chhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcC--CCcEEEEcCCchhHHHHHHHHhhhcc
Q 013826 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG--EEKCIVFTSSVESTHRLCTLLNHFGE 312 (436)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~lvf~~~~~~~~~~~~~l~~~~~ 312 (436)
...+......++..+....... ....+...........+...+.+++.... ..++||||+++..++.+++.|...
T Consensus 314 v~~l~~~~~~~~~~i~~~~~~~-~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~-- 390 (518)
T PLN00206 314 VEKFASSLAKDIILISIGNPNR-PNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV-- 390 (518)
T ss_pred HHHHHHHhCCCCEEEEeCCCCC-CCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc--
Confidence 8777777777776655443322 12223333334444556667777776543 468999999999999999999752
Q ss_pred cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEE
Q 013826 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 392 (436)
Q Consensus 313 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~ 392 (436)
.+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.++.+|+||+||+||.|..|.+++
T Consensus 391 ~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~ 470 (518)
T PLN00206 391 TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIV 470 (518)
T ss_pred cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEE
Confidence 12778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecchhHHHHHHHHHHhcCCCCCCCCCChhhhh
Q 013826 393 LLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIE 425 (436)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (436)
|+...+...+..+.+.+...+ +.+++++..
T Consensus 471 f~~~~~~~~~~~l~~~l~~~~---~~vp~~l~~ 500 (518)
T PLN00206 471 FVNEEDRNLFPELVALLKSSG---AAIPRELAN 500 (518)
T ss_pred EEchhHHHHHHHHHHHHHHcC---CCCCHHHHh
Confidence 999998888888888776655 445555443
No 8
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.8e-50 Score=385.27 Aligned_cols=341 Identities=27% Similarity=0.417 Sum_probs=288.4
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||+.|+|+|.++++.++. ++++++++|||||||.++.++++..+.... ...+++|++||++|+.|+.+.++.++
T Consensus 22 ~g~~~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~~-~~~~~lil~PtreLa~Q~~~~~~~~~ 96 (460)
T PRK11776 22 LGYTEMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVKR-FRVQALVLCPTRELADQVAKEIRRLA 96 (460)
T ss_pred CCCCCCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhcc-CCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 6899999999999887764 899999999999999999999998876542 35579999999999999999999887
Q ss_pred hhh-CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEe
Q 013826 81 PAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 159 (436)
Q Consensus 81 ~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiD 159 (436)
... ++.+..++|+.+...+... +..+++|+|+||+++..++.+.. +.+++++++|+|
T Consensus 97 ~~~~~~~v~~~~Gg~~~~~~~~~---------------------l~~~~~IvV~Tp~rl~~~l~~~~-~~l~~l~~lViD 154 (460)
T PRK11776 97 RFIPNIKVLTLCGGVPMGPQIDS---------------------LEHGAHIIVGTPGRILDHLRKGT-LDLDALNTLVLD 154 (460)
T ss_pred hhCCCcEEEEEECCCChHHHHHH---------------------hcCCCCEEEEChHHHHHHHHcCC-ccHHHCCEEEEE
Confidence 654 6888889998876555432 33567999999999999988743 678899999999
Q ss_pred hhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhh
Q 013826 160 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239 (436)
Q Consensus 160 E~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~ 239 (436)
|||++.+.+|...+..++..+.. ..+.+++|||+++....+.
T Consensus 155 Ead~~l~~g~~~~l~~i~~~~~~--------------------------------------~~q~ll~SAT~~~~~~~l~ 196 (460)
T PRK11776 155 EADRMLDMGFQDAIDAIIRQAPA--------------------------------------RRQTLLFSATYPEGIAAIS 196 (460)
T ss_pred CHHHHhCcCcHHHHHHHHHhCCc--------------------------------------ccEEEEEEecCcHHHHHHH
Confidence 99999998888888888776532 2368999999998888888
Q ss_pred ccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEE
Q 013826 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE 319 (436)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~ 319 (436)
...+.+|..+....... ...+..+........+...+..++......++||||++++.++.+++.|.+.+ ..+..
T Consensus 197 ~~~~~~~~~i~~~~~~~--~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~---~~v~~ 271 (460)
T PRK11776 197 QRFQRDPVEVKVESTHD--LPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQG---FSALA 271 (460)
T ss_pred HHhcCCCEEEEECcCCC--CCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCC---CcEEE
Confidence 87777777655433221 22234444445555588888888887778899999999999999999999877 88999
Q ss_pred eccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhH
Q 013826 320 YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399 (436)
Q Consensus 320 ~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 399 (436)
+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.++..|+||+||+||.|..|.+++++.+.+.
T Consensus 272 ~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 272 LHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred EeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhcC
Q 013826 400 KRFKKLLQKADN 411 (436)
Q Consensus 400 ~~~~~~~~~~~~ 411 (436)
..+..+.+.+..
T Consensus 352 ~~~~~i~~~~~~ 363 (460)
T PRK11776 352 QRANAIEDYLGR 363 (460)
T ss_pred HHHHHHHHHhCC
Confidence 888888766543
No 9
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.2e-50 Score=382.63 Aligned_cols=343 Identities=31% Similarity=0.484 Sum_probs=282.5
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhc-----CCccEEEEcCCHHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-----RCLRALVVLPTRDLALQVKDV 75 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~-----~~~~~lil~P~~~l~~q~~~~ 75 (436)
+||..|+|+|.++++.++. ++++++.+|||+|||+++++++++.+..... ...++||++||++|+.|+.+.
T Consensus 19 ~g~~~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~ 94 (456)
T PRK10590 19 QGYREPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGEN 94 (456)
T ss_pred CCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHH
Confidence 5899999999999887764 8999999999999999999999988865321 234799999999999999999
Q ss_pred HHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccE
Q 013826 76 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY 155 (436)
Q Consensus 76 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~ 155 (436)
+..++...++.+..+.|+.+...+.. .+...++|+|+||++|.+++.... +.++++++
T Consensus 95 ~~~~~~~~~~~~~~~~gg~~~~~~~~---------------------~l~~~~~IiV~TP~rL~~~~~~~~-~~l~~v~~ 152 (456)
T PRK10590 95 VRDYSKYLNIRSLVVFGGVSINPQMM---------------------KLRGGVDVLVATPGRLLDLEHQNA-VKLDQVEI 152 (456)
T ss_pred HHHHhccCCCEEEEEECCcCHHHHHH---------------------HHcCCCcEEEEChHHHHHHHHcCC-cccccceE
Confidence 99998888888888888887655432 233457999999999999887643 67899999
Q ss_pred EEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCc
Q 013826 156 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235 (436)
Q Consensus 156 iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~ 235 (436)
+|+||||++.+.++...+..++..+.. ..+.+++|||+....
T Consensus 153 lViDEah~ll~~~~~~~i~~il~~l~~--------------------------------------~~q~l~~SAT~~~~~ 194 (456)
T PRK10590 153 LVLDEADRMLDMGFIHDIRRVLAKLPA--------------------------------------KRQNLLFSATFSDDI 194 (456)
T ss_pred EEeecHHHHhccccHHHHHHHHHhCCc--------------------------------------cCeEEEEeCCCcHHH
Confidence 999999999988887777777655422 236799999998877
Q ss_pred hhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccce
Q 013826 236 NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRI 315 (436)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~ 315 (436)
..+....+.++..+....... ....+...........+...+..++......++||||++++.++.+++.|.+.+ +
T Consensus 195 ~~l~~~~~~~~~~i~~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g---~ 270 (456)
T PRK10590 195 KALAEKLLHNPLEIEVARRNT-ASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDG---I 270 (456)
T ss_pred HHHHHHHcCCCeEEEEecccc-cccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCC---C
Confidence 777776677776554332221 122233333344445556667777766667799999999999999999998776 8
Q ss_pred eEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEec
Q 013826 316 KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395 (436)
Q Consensus 316 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 395 (436)
.+..+|++++..+|..+++.|++|+++|||||+++++|+|+|++++||+++.|.++.+|+||+||+||.|..|.+++++.
T Consensus 271 ~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~ 350 (456)
T PRK10590 271 RSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVC 350 (456)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhcC
Q 013826 396 KDEVKRFKKLLQKADN 411 (436)
Q Consensus 396 ~~~~~~~~~~~~~~~~ 411 (436)
..+...++.+.+.+..
T Consensus 351 ~~d~~~~~~ie~~l~~ 366 (456)
T PRK10590 351 VDEHKLLRDIEKLLKK 366 (456)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9998888888777643
No 10
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3e-50 Score=381.53 Aligned_cols=342 Identities=29% Similarity=0.459 Sum_probs=281.0
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh---cCCccEEEEcCCHHHHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLALQVKDVFA 77 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~lil~P~~~l~~q~~~~~~ 77 (436)
+||..|+++|.++++.++. ++++++++|||+|||++++++++..+.... ....++||++||++|+.|+++.+.
T Consensus 19 ~g~~~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~ 94 (434)
T PRK11192 19 KGYTRPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQAR 94 (434)
T ss_pred CCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHH
Confidence 6899999999999888775 789999999999999999999998876432 124589999999999999999999
Q ss_pred HhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEE
Q 013826 78 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 157 (436)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iI 157 (436)
.++...++.+..++|+........ .+..+++|+|+||++|.+++.... +.++++++||
T Consensus 95 ~l~~~~~~~v~~~~gg~~~~~~~~---------------------~l~~~~~IlV~Tp~rl~~~~~~~~-~~~~~v~~lV 152 (434)
T PRK11192 95 ELAKHTHLDIATITGGVAYMNHAE---------------------VFSENQDIVVATPGRLLQYIKEEN-FDCRAVETLI 152 (434)
T ss_pred HHHccCCcEEEEEECCCCHHHHHH---------------------HhcCCCCEEEEChHHHHHHHHcCC-cCcccCCEEE
Confidence 998888999999999887655432 223456999999999999887644 6788999999
Q ss_pred EehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccC-ch
Q 013826 158 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD-PN 236 (436)
Q Consensus 158 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~-~~ 236 (436)
+||||++.+.+|...+..+...... ..+.+++|||+... ..
T Consensus 153 iDEah~~l~~~~~~~~~~i~~~~~~--------------------------------------~~q~~~~SAT~~~~~~~ 194 (434)
T PRK11192 153 LDEADRMLDMGFAQDIETIAAETRW--------------------------------------RKQTLLFSATLEGDAVQ 194 (434)
T ss_pred EECHHHHhCCCcHHHHHHHHHhCcc--------------------------------------ccEEEEEEeecCHHHHH
Confidence 9999999988888877777654421 23679999999743 45
Q ss_pred hhhccccCCceeeecCCccccCCccccceeeec-cCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccce
Q 013826 237 KLAQLDLHHPLFLTTGETRYKLPERLESYKLIC-ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRI 315 (436)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~ 315 (436)
.+....+.++..+........ ...+..+.... ....+...+..+++....+++||||+++++++.++..|++.+ +
T Consensus 195 ~~~~~~~~~~~~i~~~~~~~~-~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~---~ 270 (434)
T PRK11192 195 DFAERLLNDPVEVEAEPSRRE-RKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAG---I 270 (434)
T ss_pred HHHHHHccCCEEEEecCCccc-ccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCC---C
Confidence 555555566655543332221 22233333333 335577777777776677899999999999999999999866 8
Q ss_pred eEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEec
Q 013826 316 KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395 (436)
Q Consensus 316 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 395 (436)
.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+...|+||+||+||.|.+|.+++++.
T Consensus 271 ~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~ 350 (434)
T PRK11192 271 NCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVE 350 (434)
T ss_pred CEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhc
Q 013826 396 KDEVKRFKKLLQKAD 410 (436)
Q Consensus 396 ~~~~~~~~~~~~~~~ 410 (436)
..+...+.++.+.+.
T Consensus 351 ~~d~~~~~~i~~~~~ 365 (434)
T PRK11192 351 AHDHLLLGKIERYIE 365 (434)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999988888876554
No 11
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-49 Score=380.54 Aligned_cols=347 Identities=29% Similarity=0.424 Sum_probs=284.5
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhc------CCccEEEEcCCHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV------RCLRALVVLPTRDLALQVKD 74 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~------~~~~~lil~P~~~l~~q~~~ 74 (436)
+||..|+++|.++++.++. |+++++.+|||||||++++++++..+..... ..+++||++||++|+.|+.+
T Consensus 105 ~g~~~~~~iQ~~ai~~~~~----G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~ 180 (475)
T PRK01297 105 LGFPYCTPIQAQVLGYTLA----GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAK 180 (475)
T ss_pred CCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHH
Confidence 6899999999999887764 8999999999999999999999988866421 14689999999999999999
Q ss_pred HHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCcc
Q 013826 75 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 154 (436)
Q Consensus 75 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~ 154 (436)
.+..+....++.+..++|+.........+ ....++|+|+||++|..++.++. ..+++++
T Consensus 181 ~~~~l~~~~~~~v~~~~gg~~~~~~~~~~--------------------~~~~~~Iiv~TP~~Ll~~~~~~~-~~l~~l~ 239 (475)
T PRK01297 181 DAAALTKYTGLNVMTFVGGMDFDKQLKQL--------------------EARFCDILVATPGRLLDFNQRGE-VHLDMVE 239 (475)
T ss_pred HHHHhhccCCCEEEEEEccCChHHHHHHH--------------------hCCCCCEEEECHHHHHHHHHcCC-cccccCc
Confidence 99999888888999999987655543322 22356999999999998877644 6688999
Q ss_pred EEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccC
Q 013826 155 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234 (436)
Q Consensus 155 ~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~ 234 (436)
++||||+|++.+.++...+..++..+... ...+.+++|||+...
T Consensus 240 ~lViDEah~l~~~~~~~~l~~i~~~~~~~------------------------------------~~~q~i~~SAT~~~~ 283 (475)
T PRK01297 240 VMVLDEADRMLDMGFIPQVRQIIRQTPRK------------------------------------EERQTLLFSATFTDD 283 (475)
T ss_pred eEEechHHHHHhcccHHHHHHHHHhCCCC------------------------------------CCceEEEEEeecCHH
Confidence 99999999998887777777776654321 123689999999887
Q ss_pred chhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccc
Q 013826 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELR 314 (436)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~ 314 (436)
.......+..++..+......... ..............+...+..++......++||||++++.++.+++.|.+.+
T Consensus 284 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~--- 359 (475)
T PRK01297 284 VMNLAKQWTTDPAIVEIEPENVAS-DTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDG--- 359 (475)
T ss_pred HHHHHHHhccCCEEEEeccCcCCC-CcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcC---
Confidence 777777777777665443322211 1222233333445566777787777777899999999999999999998776
Q ss_pred eeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEe
Q 013826 315 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394 (436)
Q Consensus 315 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~ 394 (436)
+.+..+||+++..+|.+.++.|++|++++||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|.+|.+++|+
T Consensus 360 ~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~ 439 (475)
T PRK01297 360 INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFA 439 (475)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEe
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhcCC
Q 013826 395 HKDEVKRFKKLLQKADND 412 (436)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~ 412 (436)
...|...+.++.+.+...
T Consensus 440 ~~~d~~~~~~~~~~~~~~ 457 (475)
T PRK01297 440 GEDDAFQLPEIEELLGRK 457 (475)
T ss_pred cHHHHHHHHHHHHHhCCC
Confidence 998888888887766433
No 12
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.2e-49 Score=383.85 Aligned_cols=340 Identities=27% Similarity=0.455 Sum_probs=284.2
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||.+|+|+|.+++..++. ++++|+.||||+|||.++.+++++.+... ...+++||++||++|+.|+++.+..+.
T Consensus 24 ~G~~~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~-~~~~~~LIL~PTreLa~Qv~~~l~~~~ 98 (629)
T PRK11634 24 LGYEKPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPE-LKAPQILVLAPTRELAVQVAEAMTDFS 98 (629)
T ss_pred CCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhc-cCCCeEEEEeCcHHHHHHHHHHHHHHH
Confidence 6999999999998887764 79999999999999999999999887654 245689999999999999999999887
Q ss_pred hhh-CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEe
Q 013826 81 PAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 159 (436)
Q Consensus 81 ~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiD 159 (436)
... ++.+..++|+.....+.. .+..+++|+|+||+++++++.+.. +.+++++++|+|
T Consensus 99 ~~~~~i~v~~~~gG~~~~~q~~---------------------~l~~~~~IVVgTPgrl~d~l~r~~-l~l~~l~~lVlD 156 (629)
T PRK11634 99 KHMRGVNVVALYGGQRYDVQLR---------------------ALRQGPQIVVGTPGRLLDHLKRGT-LDLSKLSGLVLD 156 (629)
T ss_pred hhcCCceEEEEECCcCHHHHHH---------------------HhcCCCCEEEECHHHHHHHHHcCC-cchhhceEEEec
Confidence 654 788888888876554432 234567999999999999888643 678999999999
Q ss_pred hhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhh
Q 013826 160 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239 (436)
Q Consensus 160 E~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~ 239 (436)
|||.++..+|...+..++..+.. ..+.+++|||++.....+.
T Consensus 157 EAd~ml~~gf~~di~~Il~~lp~--------------------------------------~~q~llfSAT~p~~i~~i~ 198 (629)
T PRK11634 157 EADEMLRMGFIEDVETIMAQIPE--------------------------------------GHQTALFSATMPEAIRRIT 198 (629)
T ss_pred cHHHHhhcccHHHHHHHHHhCCC--------------------------------------CCeEEEEEccCChhHHHHH
Confidence 99999999888888888766532 2367999999998888887
Q ss_pred ccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEE
Q 013826 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE 319 (436)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~ 319 (436)
..++.++..+.........+ .+...........+...+..++......++||||+++..++.+++.|.+.+ +.+..
T Consensus 199 ~~~l~~~~~i~i~~~~~~~~-~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g---~~~~~ 274 (629)
T PRK11634 199 RRFMKEPQEVRIQSSVTTRP-DISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNG---YNSAA 274 (629)
T ss_pred HHHcCCCeEEEccCccccCC-ceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCC---CCEEE
Confidence 77777776554433222222 223333344445677778888877777899999999999999999999876 88999
Q ss_pred eccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhH
Q 013826 320 YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399 (436)
Q Consensus 320 ~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 399 (436)
+|++|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.++..|+||+||+||.|+.|.+++++.+.+.
T Consensus 275 lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 275 LNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred eeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHh
Q 013826 400 KRFKKLLQKA 409 (436)
Q Consensus 400 ~~~~~~~~~~ 409 (436)
..++.+.+..
T Consensus 355 ~~l~~ie~~~ 364 (629)
T PRK11634 355 RLLRNIERTM 364 (629)
T ss_pred HHHHHHHHHh
Confidence 8888776655
No 13
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-50 Score=352.66 Aligned_cols=366 Identities=34% Similarity=0.582 Sum_probs=310.7
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh--cCCccEEEEcCCHHHHHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~--~~~~~~lil~P~~~l~~q~~~~~~~ 78 (436)
+||+.|+|.|...+.-++ .+++++-+|.||||||.++++|+++.+.-.+ .+.-++|||+||++|+.|.....+.
T Consensus 199 lGy~~PTpIQ~a~IPval----lgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~q 274 (691)
T KOG0338|consen 199 LGYKKPTPIQVATIPVAL----LGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQ 274 (691)
T ss_pred cCCCCCCchhhhcccHHh----hcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHH
Confidence 699999999976665443 5899999999999999999999999986643 2445899999999999999999999
Q ss_pred hhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEE
Q 013826 79 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 158 (436)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIi 158 (436)
++.+..+.+++..|+.....+- +.+..+|+|+|+||++|.+.+..++.|+++++.++|+
T Consensus 275 laqFt~I~~~L~vGGL~lk~QE---------------------~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvl 333 (691)
T KOG0338|consen 275 LAQFTDITVGLAVGGLDLKAQE---------------------AVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVL 333 (691)
T ss_pred HHhhccceeeeeecCccHHHHH---------------------HHHhhCCCEEEecchhHHHHhccCCCccccceeEEEe
Confidence 9999999999999999876553 2456778999999999999999999999999999999
Q ss_pred ehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhh
Q 013826 159 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238 (436)
Q Consensus 159 DE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~ 238 (436)
|||++|++.+|.+.+..|.+++.. ..|.+++|||+...+..+
T Consensus 334 DEADRMLeegFademnEii~lcpk--------------------------------------~RQTmLFSATMteeVkdL 375 (691)
T KOG0338|consen 334 DEADRMLEEGFADEMNEIIRLCPK--------------------------------------NRQTMLFSATMTEEVKDL 375 (691)
T ss_pred chHHHHHHHHHHHHHHHHHHhccc--------------------------------------cccceeehhhhHHHHHHH
Confidence 999999999999999999998865 347899999999999999
Q ss_pred hccccCCceeeecCCccccCCccccceeee--ccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhccccee
Q 013826 239 AQLDLHHPLFLTTGETRYKLPERLESYKLI--CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 316 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~ 316 (436)
+...+..|+.+-........+...+.+... .....+...+..++...-..+++||+.+.+.|.++--.|-=+ +..
T Consensus 376 ~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLl---gl~ 452 (691)
T KOG0338|consen 376 ASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLL---GLK 452 (691)
T ss_pred HHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHh---hch
Confidence 999999998664444333333322333222 234456777888887777889999999999999998877544 489
Q ss_pred EEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecc
Q 013826 317 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 396 (436)
Q Consensus 317 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 396 (436)
++-+||.+++.+|.+.++.|+++++++||||+..++|+|++++.+||+|..|.+...|+||+||..|.|+.|..++++-.
T Consensus 453 agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE 532 (691)
T KOG0338|consen 453 AGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGE 532 (691)
T ss_pred hhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHh--cCCCCCCCCCChhhhhhhhhccc
Q 013826 397 DEVKRFKKLLQKA--DNDSCPIHSIPSSLIESLRPVYK 432 (436)
Q Consensus 397 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 432 (436)
.+.+.++.+++.. ....+--..++.+.++.++...+
T Consensus 533 ~dRkllK~iik~~~~a~~klk~R~i~~~~Iek~~~~ie 570 (691)
T KOG0338|consen 533 SDRKLLKEIIKSSTKAGSKLKNRNIPPEVIEKFRKKIE 570 (691)
T ss_pred ccHHHHHHHHhhhhhcccchhhcCCCHHHHHHHHHHHH
Confidence 9999999999885 33334444577777777665543
No 14
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-49 Score=377.22 Aligned_cols=345 Identities=31% Similarity=0.527 Sum_probs=300.3
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCcc-EEEEcCCHHHHHHHHHHHHHh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-ALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~-~lil~P~~~l~~q~~~~~~~~ 79 (436)
+||..|+|.|..++..++. +++++..++||||||.++.+|+++.+......... +||++||++|+.|+++.+..+
T Consensus 47 ~gf~~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~ 122 (513)
T COG0513 47 LGFEEPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKL 122 (513)
T ss_pred cCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHH
Confidence 5899999999888777664 89999999999999999999999997642112222 999999999999999999999
Q ss_pred hhhh-CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEE
Q 013826 80 APAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 158 (436)
Q Consensus 80 ~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIi 158 (436)
.... ++.+..+.|+.+...+...+ ..+++|+|+||+++++++.+. .+.++.+.++|+
T Consensus 123 ~~~~~~~~~~~i~GG~~~~~q~~~l---------------------~~~~~ivVaTPGRllD~i~~~-~l~l~~v~~lVl 180 (513)
T COG0513 123 GKNLGGLRVAVVYGGVSIRKQIEAL---------------------KRGVDIVVATPGRLLDLIKRG-KLDLSGVETLVL 180 (513)
T ss_pred HhhcCCccEEEEECCCCHHHHHHHH---------------------hcCCCEEEECccHHHHHHHcC-CcchhhcCEEEe
Confidence 9888 78999999999887776332 235799999999999999986 588999999999
Q ss_pred ehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhh
Q 013826 159 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238 (436)
Q Consensus 159 DE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~ 238 (436)
|||+.|++.+|...++.+...+.. ..|++++|||++..+..+
T Consensus 181 DEADrmLd~Gf~~~i~~I~~~~p~--------------------------------------~~qtllfSAT~~~~i~~l 222 (513)
T COG0513 181 DEADRMLDMGFIDDIEKILKALPP--------------------------------------DRQTLLFSATMPDDIREL 222 (513)
T ss_pred ccHhhhhcCCCHHHHHHHHHhCCc--------------------------------------ccEEEEEecCCCHHHHHH
Confidence 999999999999999999988753 247899999999988889
Q ss_pred hccccCCceeeecCCccc-cCCccccceeeeccCc-CcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhccccee
Q 013826 239 AQLDLHHPLFLTTGETRY-KLPERLESYKLICESK-LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 316 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~ 316 (436)
....+.+|..+....... .....+..+....... .|...+..++......++||||+++..++.++..|...+ +.
T Consensus 223 ~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g---~~ 299 (513)
T COG0513 223 ARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRG---FK 299 (513)
T ss_pred HHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCC---Ce
Confidence 999999987665553222 2445555666666654 499999999988888899999999999999999999888 99
Q ss_pred EEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecc
Q 013826 317 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 396 (436)
Q Consensus 317 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 396 (436)
+..+||++++.+|...++.|++|+.+|||||+++++|+|+|++++||+|+.|.++..|+||+||+||.|..|.+++|+.+
T Consensus 300 ~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~ 379 (513)
T COG0513 300 VAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTE 379 (513)
T ss_pred EEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred h-hHHHHHHHHHHhcCC
Q 013826 397 D-EVKRFKKLLQKADND 412 (436)
Q Consensus 397 ~-~~~~~~~~~~~~~~~ 412 (436)
. +...+..+.+.+...
T Consensus 380 ~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 380 EEEVKKLKRIEKRLERK 396 (513)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 6 888888888776444
No 15
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=5.7e-49 Score=370.63 Aligned_cols=342 Identities=24% Similarity=0.425 Sum_probs=274.0
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||..|+|+|.++++.+.. ++++++.+|||+|||.+++++++..+... ..+.++||++|+++|+.|+.+.+..++
T Consensus 46 ~~~~~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~~-~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 120 (401)
T PTZ00424 46 YGFEKPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDYD-LNACQALILAPTRELAQQIQKVVLALG 120 (401)
T ss_pred cCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcCC-CCCceEEEECCCHHHHHHHHHHHHHHh
Confidence 5899999999999888765 88999999999999999999988876532 245689999999999999999999988
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013826 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
...+..+....|+........ ....+++|+|+||+.+.+.+.+.. ..+++++++|+||
T Consensus 121 ~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~Ivv~Tp~~l~~~l~~~~-~~l~~i~lvViDE 178 (401)
T PTZ00424 121 DYLKVRCHACVGGTVVRDDIN---------------------KLKAGVHMVVGTPGRVYDMIDKRH-LRVDDLKLFILDE 178 (401)
T ss_pred hhcCceEEEEECCcCHHHHHH---------------------HHcCCCCEEEECcHHHHHHHHhCC-cccccccEEEEec
Confidence 776777777777765444332 233456999999999999887644 6688999999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc
Q 013826 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 240 (436)
+|++.+.++...+..++.... +..+.+++|||+++.......
T Consensus 179 ah~~~~~~~~~~~~~i~~~~~--------------------------------------~~~~~i~~SAT~~~~~~~~~~ 220 (401)
T PTZ00424 179 ADEMLSRGFKGQIYDVFKKLP--------------------------------------PDVQVALFSATMPNEILELTT 220 (401)
T ss_pred HHHHHhcchHHHHHHHHhhCC--------------------------------------CCcEEEEEEecCCHHHHHHHH
Confidence 999988877766666554431 234789999999877666666
Q ss_pred cccCCceeeecCCccccCCccccceeee-ccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEE
Q 013826 241 LDLHHPLFLTTGETRYKLPERLESYKLI-CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE 319 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~ 319 (436)
..+.++.............. +..+... .....+...+..++......++||||+++++++.+++.|.+.+ ..+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~---~~~~~ 296 (401)
T PTZ00424 221 KFMRDPKRILVKKDELTLEG-IRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERD---FTVSC 296 (401)
T ss_pred HHcCCCEEEEeCCCCcccCC-ceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCC---CcEEE
Confidence 66666654433222222221 2222222 2223345556666666667799999999999999999998765 78999
Q ss_pred eccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhH
Q 013826 320 YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399 (436)
Q Consensus 320 ~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 399 (436)
+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+...|+||+||+||.|.+|.|++++.+.+.
T Consensus 297 ~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~ 376 (401)
T PTZ00424 297 MHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDI 376 (401)
T ss_pred EeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 013826 400 KRFKKLLQKADN 411 (436)
Q Consensus 400 ~~~~~~~~~~~~ 411 (436)
+.+..+.+....
T Consensus 377 ~~~~~~e~~~~~ 388 (401)
T PTZ00424 377 EQLKEIERHYNT 388 (401)
T ss_pred HHHHHHHHHHCC
Confidence 999988877753
No 16
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-49 Score=324.56 Aligned_cols=344 Identities=24% Similarity=0.423 Sum_probs=301.3
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
.||++|+..|++|+..++ ++++++..+..|+|||.++.+.++..+.-+. +...+++++||++|+.|+.+.+..++
T Consensus 45 yGfekPS~IQqrAi~~Il----kGrdViaQaqSGTGKTa~~si~vlq~~d~~~-r~tQ~lilsPTRELa~Qi~~vi~alg 119 (400)
T KOG0328|consen 45 YGFEKPSAIQQRAIPQIL----KGRDVIAQAQSGTGKTATFSISVLQSLDISV-RETQALILSPTRELAVQIQKVILALG 119 (400)
T ss_pred hccCCchHHHhhhhhhhh----cccceEEEecCCCCceEEEEeeeeeeccccc-ceeeEEEecChHHHHHHHHHHHHHhc
Confidence 489999999987766655 5999999999999999988887777665442 44679999999999999999999999
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013826 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
...++.+....|+.+..+++. .+..+.+++.+||++++.++++.. +.-..+.++|+||
T Consensus 120 ~~mnvq~hacigg~n~gedik---------------------kld~G~hvVsGtPGrv~dmikr~~-L~tr~vkmlVLDE 177 (400)
T KOG0328|consen 120 DYMNVQCHACIGGKNLGEDIK---------------------KLDYGQHVVSGTPGRVLDMIKRRS-LRTRAVKMLVLDE 177 (400)
T ss_pred ccccceEEEEecCCccchhhh---------------------hhcccceEeeCCCchHHHHHHhcc-ccccceeEEEecc
Confidence 988999988888887655543 344667999999999999999855 6778899999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc
Q 013826 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 240 (436)
++.+++.+|.+.+-.+++.++ +..|.+++|||++..+.+...
T Consensus 178 aDemL~kgfk~Qiydiyr~lp--------------------------------------~~~Qvv~~SATlp~eilemt~ 219 (400)
T KOG0328|consen 178 ADEMLNKGFKEQIYDIYRYLP--------------------------------------PGAQVVLVSATLPHEILEMTE 219 (400)
T ss_pred HHHHHHhhHHHHHHHHHHhCC--------------------------------------CCceEEEEeccCcHHHHHHHH
Confidence 999999999998888888774 355899999999999999999
Q ss_pred cccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEe
Q 013826 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 320 (436)
.++.+|..+....+..........+......+.|.+.|..+.....-.+++|||+++.....+.+.+++.. +.+...
T Consensus 220 kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~n---ftVssm 296 (400)
T KOG0328|consen 220 KFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREAN---FTVSSM 296 (400)
T ss_pred HhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhC---ceeeec
Confidence 99999988777776665554444455555566699999998888777899999999999999999999776 899999
Q ss_pred ccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhHH
Q 013826 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400 (436)
Q Consensus 321 ~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 400 (436)
||+|+.+||+++++.|++|+.+|||+|+.-++|+|+|.++.||+|+.|.+...|++|+||.||.|++|.++-|+...|..
T Consensus 297 HGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~ 376 (400)
T KOG0328|consen 297 HGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLR 376 (400)
T ss_pred cCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 013826 401 RFKKLLQKADND 412 (436)
Q Consensus 401 ~~~~~~~~~~~~ 412 (436)
.+..+.+.+.-.
T Consensus 377 ~lrdieq~yst~ 388 (400)
T KOG0328|consen 377 ILRDIEQYYSTQ 388 (400)
T ss_pred HHHHHHHHHhhh
Confidence 999999887533
No 17
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-48 Score=339.18 Aligned_cols=345 Identities=32% Similarity=0.514 Sum_probs=297.7
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhc--CC--ccEEEEcCCHHHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RC--LRALVVLPTRDLALQVKDVF 76 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~--~~--~~~lil~P~~~l~~q~~~~~ 76 (436)
+||+.++|.|..++..+ +.++++++.++||||||+++++|+++.+..... +. .-+||++||++|+.|+.+.+
T Consensus 24 ~GF~~mTpVQa~tIPll----l~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~ 99 (567)
T KOG0345|consen 24 SGFEKMTPVQAATIPLL----LKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVA 99 (567)
T ss_pred cCCcccCHHHHhhhHHH----hcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHH
Confidence 58999999997766554 469999999999999999999999999954321 22 25899999999999999998
Q ss_pred HHhhhh-hCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcC-CCcccCCcc
Q 013826 77 AAIAPA-VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT-RGFTLEHLC 154 (436)
Q Consensus 77 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~-~~~~~~~~~ 154 (436)
..+... .+++..+++|+.+..++...+. ..+++|+|+||++|.+++.+. ..+++.++.
T Consensus 100 ~~F~~~l~~l~~~l~vGG~~v~~Di~~fk--------------------ee~~nIlVgTPGRL~di~~~~~~~l~~rsLe 159 (567)
T KOG0345|consen 100 QPFLEHLPNLNCELLVGGRSVEEDIKTFK--------------------EEGPNILVGTPGRLLDILQREAEKLSFRSLE 159 (567)
T ss_pred HHHHHhhhccceEEEecCccHHHHHHHHH--------------------HhCCcEEEeCchhHHHHHhchhhhccccccc
Confidence 888766 3788899999988877766543 356799999999999999873 335677999
Q ss_pred EEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccC
Q 013826 155 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234 (436)
Q Consensus 155 ~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~ 234 (436)
++|+|||+.+++.+|...++.|++.++..+ ++=++|||....
T Consensus 160 ~LVLDEADrLldmgFe~~~n~ILs~LPKQR--------------------------------------RTGLFSATq~~~ 201 (567)
T KOG0345|consen 160 ILVLDEADRLLDMGFEASVNTILSFLPKQR--------------------------------------RTGLFSATQTQE 201 (567)
T ss_pred eEEecchHhHhcccHHHHHHHHHHhccccc--------------------------------------ccccccchhhHH
Confidence 999999999999999999999999886532 356999999999
Q ss_pred chhhhccccCCceeeecCCccc-cCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhccc
Q 013826 235 PNKLAQLDLHHPLFLTTGETRY-KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL 313 (436)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~ 313 (436)
...+...++.+|..+....... ..+.....++.......|...+.+++.+...+++|||.+|....+.++..+... ..
T Consensus 202 v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~-l~ 280 (567)
T KOG0345|consen 202 VEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRL-LK 280 (567)
T ss_pred HHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHH-hC
Confidence 9999999999999876655442 356667788899999999999999999999999999999999999999999876 34
Q ss_pred ceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEE
Q 013826 314 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393 (436)
Q Consensus 314 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 393 (436)
...+..+||.|....|..++..|.+....+|+||+++.+|+|+|+++.||++|+|..+..|+||+||++|.|+.|.+++|
T Consensus 281 ~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivf 360 (567)
T KOG0345|consen 281 KREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVF 360 (567)
T ss_pred CCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEE
Confidence 47899999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred ecchhHHHHHHHHHHh
Q 013826 394 LHKDEVKRFKKLLQKA 409 (436)
Q Consensus 394 ~~~~~~~~~~~~~~~~ 409 (436)
..+ ....+.+|++.-
T Consensus 361 l~p-~E~aYveFl~i~ 375 (567)
T KOG0345|consen 361 LNP-REEAYVEFLRIK 375 (567)
T ss_pred ecc-cHHHHHHHHHhc
Confidence 988 445555565543
No 18
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=5.2e-48 Score=342.01 Aligned_cols=375 Identities=27% Similarity=0.410 Sum_probs=310.7
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh--------cCCccEEEEcCCHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--------VRCLRALVVLPTRDLALQV 72 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~--------~~~~~~lil~P~~~l~~q~ 72 (436)
.||+.|+|.|..++. -.+++.+.|..+.||||||.+++++++.++..-+ ..++.+++++||++|++|+
T Consensus 263 ~~y~eptpIqR~aip----l~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqI 338 (673)
T KOG0333|consen 263 PGYKEPTPIQRQAIP----LGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQI 338 (673)
T ss_pred cCCCCCchHHHhhcc----chhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHH
Confidence 389999999976654 4567899999999999999999999998875432 3678999999999999999
Q ss_pred HHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCC
Q 013826 73 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEH 152 (436)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~ 152 (436)
.++-..++...|+.+..+.|+.+..++.. .+..+|+|+|+||+.|..-|+..+ +.++.
T Consensus 339 eeEt~kf~~~lg~r~vsvigg~s~EEq~f---------------------qls~gceiviatPgrLid~Lenr~-lvl~q 396 (673)
T KOG0333|consen 339 EEETNKFGKPLGIRTVSVIGGLSFEEQGF---------------------QLSMGCEIVIATPGRLIDSLENRY-LVLNQ 396 (673)
T ss_pred HHHHHHhcccccceEEEEecccchhhhhh---------------------hhhccceeeecCchHHHHHHHHHH-HHhcc
Confidence 99999999999999999999998877643 355678999999999999998755 77899
Q ss_pred ccEEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccc
Q 013826 153 LCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232 (436)
Q Consensus 153 ~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~ 232 (436)
..++|+|||+.+.+.+|...+..++..+.+......++...-..... ..........+.+++|||++
T Consensus 397 ctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~-------------~~~~~~k~yrqT~mftatm~ 463 (673)
T KOG0333|consen 397 CTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVR-------------KNFSSSKKYRQTVMFTATMP 463 (673)
T ss_pred CceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHH-------------hhcccccceeEEEEEecCCC
Confidence 99999999999999999999999999887654432221111000000 00011113358899999999
Q ss_pred cCchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcc
Q 013826 233 QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312 (436)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~ 312 (436)
+.+..++...+.+|.++..+....+.+.. +........+.+...|.+++.+.-..++|||+|+++.|+.+|+.|.+.+
T Consensus 464 p~verlar~ylr~pv~vtig~~gk~~~rv-eQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g- 541 (673)
T KOG0333|consen 464 PAVERLARSYLRRPVVVTIGSAGKPTPRV-EQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAG- 541 (673)
T ss_pred hHHHHHHHHHhhCCeEEEeccCCCCccch-heEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhcc-
Confidence 99999999999999998877766555443 3444455566679999999999888999999999999999999999888
Q ss_pred cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEE
Q 013826 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 392 (436)
Q Consensus 313 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~ 392 (436)
+.+..+||+.+.++|+..+..|++|..+|||||++.++|||+|++.+||+|+.++|+.+|.||+||.||.|+.|.+++
T Consensus 542 --~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiS 619 (673)
T KOG0333|consen 542 --YKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAIS 619 (673)
T ss_pred --ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecchhHHHHHHHHHH---hcCCCCCCCC
Q 013826 393 LLHKDEVKRFKKLLQK---ADNDSCPIHS 418 (436)
Q Consensus 393 ~~~~~~~~~~~~~~~~---~~~~~~~~~~ 418 (436)
|++..|...+..+.+. ..+..||++.
T Consensus 620 flt~~dt~v~ydLkq~l~es~~s~~P~El 648 (673)
T KOG0333|consen 620 FLTPADTAVFYDLKQALRESVKSHCPPEL 648 (673)
T ss_pred EeccchhHHHHHHHHHHHHhhhccCChhh
Confidence 9999997655544444 3355566554
No 19
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-48 Score=326.29 Aligned_cols=351 Identities=29% Similarity=0.448 Sum_probs=303.1
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
||++.|+|.|..++.++++ |+++|-+|.||||||.++.+++++.+...+ .+.-++|++||++|+.|+++.|..++
T Consensus 25 l~i~~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLsedP-~giFalvlTPTrELA~QiaEQF~alG 99 (442)
T KOG0340|consen 25 LGIKKPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSEDP-YGIFALVLTPTRELALQIAEQFIALG 99 (442)
T ss_pred hcCCCCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhccCC-CcceEEEecchHHHHHHHHHHHHHhc
Confidence 6899999999888777765 999999999999999999999999998875 56689999999999999999999999
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCC---cccCCccEEE
Q 013826 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG---FTLEHLCYLV 157 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~---~~~~~~~~iI 157 (436)
...++.+.+++|+...-.+.. .+..+++++++||+++..++..+.+ +.++++.++|
T Consensus 100 k~l~lK~~vivGG~d~i~qa~---------------------~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 100 KLLNLKVSVIVGGTDMIMQAA---------------------ILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred ccccceEEEEEccHHHhhhhh---------------------hcccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 988999999999987655432 3556779999999999999988743 4588999999
Q ss_pred EehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchh
Q 013826 158 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237 (436)
Q Consensus 158 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 237 (436)
+|||+.+++..|...++.++.-.+.+ .|.+++|||.......
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~--------------------------------------RQtLlfSATitd~i~q 200 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKP--------------------------------------RQTLLFSATITDTIKQ 200 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCc--------------------------------------cceEEEEeehhhHHHH
Confidence 99999999999998888888766432 3789999999988877
Q ss_pred hhccccCCceee-ecCCccccCCccccceeeeccCcCcHHHHHHHHHhcC---CCcEEEEcCCchhHHHHHHHHhhhccc
Q 013826 238 LAQLDLHHPLFL-TTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG---EEKCIVFTSSVESTHRLCTLLNHFGEL 313 (436)
Q Consensus 238 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~lvf~~~~~~~~~~~~~l~~~~~~ 313 (436)
........+..+ -.........+.....++..+...+..+++..++... .+.++||+++...|+.++..|+++.
T Consensus 201 l~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le-- 278 (442)
T KOG0340|consen 201 LFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLE-- 278 (442)
T ss_pred hhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhc--
Confidence 776665553222 2223444555666677788888899999999997764 4679999999999999999999877
Q ss_pred ceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEE
Q 013826 314 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393 (436)
Q Consensus 314 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 393 (436)
+.+..+|+-|+..+|...+.+|+++..++||||++.++|+|+|.++.|++++.|..+.+|++|.||..|.|+.|.++.+
T Consensus 279 -~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSi 357 (442)
T KOG0340|consen 279 -VRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISI 357 (442)
T ss_pred -eeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecchhHHHHHHHHHHhcCCCCCCCCC
Q 013826 394 LHKDEVKRFKKLLQKADNDSCPIHSI 419 (436)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (436)
+...|.+.+..+++.+.+. +..++.
T Consensus 358 vt~rDv~l~~aiE~~igkK-l~e~~~ 382 (442)
T KOG0340|consen 358 VTQRDVELLQAIEEEIGKK-LTEYNK 382 (442)
T ss_pred echhhHHHHHHHHHHHhcc-cccccc
Confidence 9999999999999988544 444443
No 20
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.7e-47 Score=336.82 Aligned_cols=340 Identities=33% Similarity=0.498 Sum_probs=295.4
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh---cCCccEEEEcCCHHHHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLALQVKDVFA 77 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~lil~P~~~l~~q~~~~~~ 77 (436)
|||..+++.| +..+.+++.+++++..|-||+|||+++++|+.+.+.+.+ ..+..++|++||++|+.|++.+.+
T Consensus 100 ~GF~~MT~VQ----~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak 175 (543)
T KOG0342|consen 100 MGFETMTPVQ----QKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAK 175 (543)
T ss_pred cCccchhHHH----HhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHH
Confidence 7999999999 455666777999999999999999999999999987754 244579999999999999999999
Q ss_pred Hhhhhh-CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEE
Q 013826 78 AIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL 156 (436)
Q Consensus 78 ~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~i 156 (436)
.+.... ++.+..+.|+........ .+..+++|+|+||++|.+++.....+.+.+.+++
T Consensus 176 ~Ll~~h~~~~v~~viGG~~~~~e~~---------------------kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~l 234 (543)
T KOG0342|consen 176 ELLKYHESITVGIVIGGNNFSVEAD---------------------KLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCL 234 (543)
T ss_pred HHHhhCCCcceEEEeCCccchHHHH---------------------HhhccccEEEeCCchHHhHhhcCCcchhhcccee
Confidence 999887 788888999987655543 3444789999999999999999888888889999
Q ss_pred EEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCch
Q 013826 157 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236 (436)
Q Consensus 157 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 236 (436)
|+|||+++++.+|.+-++.|...+.. ..|.+++|||.+..+.
T Consensus 235 vlDEADrlLd~GF~~di~~Ii~~lpk--------------------------------------~rqt~LFSAT~~~kV~ 276 (543)
T KOG0342|consen 235 VLDEADRLLDIGFEEDVEQIIKILPK--------------------------------------QRQTLLFSATQPSKVK 276 (543)
T ss_pred EeecchhhhhcccHHHHHHHHHhccc--------------------------------------cceeeEeeCCCcHHHH
Confidence 99999999999999999999998753 2378999999999999
Q ss_pred hhhccccCC-ceeeecC-CccccCCccccceeeeccCcCcHHHHHHHHHhcCC-CcEEEEcCCchhHHHHHHHHhhhccc
Q 013826 237 KLAQLDLHH-PLFLTTG-ETRYKLPERLESYKLICESKLKPLYLVALLQSLGE-EKCIVFTSSVESTHRLCTLLNHFGEL 313 (436)
Q Consensus 237 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~lvf~~~~~~~~~~~~~l~~~~~~ 313 (436)
.+....+.. +..+... .......+......+..+...+...+..+++++.. .+++|||+|......+++.|+...
T Consensus 277 ~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~d-- 354 (543)
T KOG0342|consen 277 DLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYID-- 354 (543)
T ss_pred HHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcC--
Confidence 988877765 5544322 33344455666667777778888899999988765 899999999999999999999665
Q ss_pred ceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEE
Q 013826 314 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393 (436)
Q Consensus 314 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 393 (436)
++|..+||+.++..|..+...|.+.+.-||+||++..+|+|+|++++||.+++|..+.+|+||+||.+|.|..|+++.+
T Consensus 355 -lpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~ 433 (543)
T KOG0342|consen 355 -LPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLL 433 (543)
T ss_pred -CchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecchhHHHHHHHH
Q 013826 394 LHKDEVKRFKKLL 406 (436)
Q Consensus 394 ~~~~~~~~~~~~~ 406 (436)
..+.+...+..+-
T Consensus 434 l~p~El~Flr~LK 446 (543)
T KOG0342|consen 434 LAPWELGFLRYLK 446 (543)
T ss_pred eChhHHHHHHHHh
Confidence 9988876666554
No 21
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-48 Score=322.64 Aligned_cols=349 Identities=27% Similarity=0.462 Sum_probs=307.8
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||+.|+|.|.+++.. .+.|++++..|..|+|||.++.+|+++.+...+ ....+++++||++|+.|+...++++.
T Consensus 103 ~G~ekPSPiQeesIPi----aLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~-~~IQ~~ilVPtrelALQtSqvc~~ls 177 (459)
T KOG0326|consen 103 KGFEKPSPIQEESIPI----ALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK-NVIQAIILVPTRELALQTSQVCKELS 177 (459)
T ss_pred hccCCCCCccccccce----eecchhhhhhccCCCCCccceechhhhhcCccc-cceeEEEEeecchhhHHHHHHHHHHh
Confidence 5899999999766554 456999999999999999999999999886653 55689999999999999999999999
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013826 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
+..|+.+...+|+++..+++.. +....+++|+||++++++..+.. -.+++..++|+||
T Consensus 178 kh~~i~vmvttGGT~lrDDI~R---------------------l~~~VH~~vgTPGRIlDL~~KgV-a~ls~c~~lV~DE 235 (459)
T KOG0326|consen 178 KHLGIKVMVTTGGTSLRDDIMR---------------------LNQTVHLVVGTPGRILDLAKKGV-ADLSDCVILVMDE 235 (459)
T ss_pred cccCeEEEEecCCcccccceee---------------------ecCceEEEEcCChhHHHHHhccc-ccchhceEEEech
Confidence 9999999999999987776543 33445899999999999998754 5689999999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc
Q 013826 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 240 (436)
|+.+++..|...++.+...++. ..|.+++|||.+-.+..+..
T Consensus 236 ADKlLs~~F~~~~e~li~~lP~--------------------------------------~rQillySATFP~tVk~Fm~ 277 (459)
T KOG0326|consen 236 ADKLLSVDFQPIVEKLISFLPK--------------------------------------ERQILLYSATFPLTVKGFMD 277 (459)
T ss_pred hhhhhchhhhhHHHHHHHhCCc--------------------------------------cceeeEEecccchhHHHHHH
Confidence 9999999999999999988754 34789999999999999999
Q ss_pred cccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEe
Q 013826 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 320 (436)
..+.+|+.++....-. ...+..|........|...|.-++.+..-...+|||+|....+.+|..+.++| +.+.++
T Consensus 278 ~~l~kPy~INLM~eLt--l~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelG---yscyyi 352 (459)
T KOG0326|consen 278 RHLKKPYEINLMEELT--LKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELG---YSCYYI 352 (459)
T ss_pred HhccCcceeehhhhhh--hcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhcc---chhhHH
Confidence 9999999887655332 23344566667777888888888888777899999999999999999999998 999999
Q ss_pred ccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhHH
Q 013826 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400 (436)
Q Consensus 321 ~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 400 (436)
|+.|....|..+++.|++|.|+.||||+.+.+|+|++.+++||+||.|++...|.+|+||.||.|..|.++.+++-.|..
T Consensus 353 HakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf 432 (459)
T KOG0326|consen 353 HAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRF 432 (459)
T ss_pred HHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCChh
Q 013826 401 RFKKLLQKADNDSCPIHSIPSS 422 (436)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~ 422 (436)
.+..+++++..+. +++|+.
T Consensus 433 ~L~~IE~eLGtEI---~pip~~ 451 (459)
T KOG0326|consen 433 NLYRIEQELGTEI---KPIPSN 451 (459)
T ss_pred hHHHHHHHhcccc---ccCCCc
Confidence 9999999997654 555543
No 22
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-46 Score=334.69 Aligned_cols=335 Identities=30% Similarity=0.447 Sum_probs=301.6
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh---cCCccEEEEcCCHHHHHHHHHHHHH
Q 013826 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~lil~P~~~l~~q~~~~~~~ 78 (436)
+|..++..|.+++ +..++|.+++-.|-||||||+++++|+++.+...+ ..+.-+||++||++|+.|+++.+.+
T Consensus 88 ~fv~~teiQ~~~I----p~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~k 163 (758)
T KOG0343|consen 88 KFVKMTEIQRDTI----PMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNK 163 (758)
T ss_pred CCccHHHHHHhhc----chhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHH
Confidence 5778889996654 45557999999999999999999999999987754 3566899999999999999999999
Q ss_pred hhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEE
Q 013826 79 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 158 (436)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIi 158 (436)
++...++..+.+.|+.......... ++.+|+||||++|+..+..++.++-+++.++|+
T Consensus 164 vgk~h~fSaGLiiGG~~~k~E~eRi----------------------~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvL 221 (758)
T KOG0343|consen 164 VGKHHDFSAGLIIGGKDVKFELERI----------------------SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVL 221 (758)
T ss_pred HhhccccccceeecCchhHHHHHhh----------------------hcCCeEEechHHHHHHhhhcCCCCCCcceEEEe
Confidence 9999999999999998866654322 356999999999999999999899999999999
Q ss_pred ehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhh
Q 013826 159 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238 (436)
Q Consensus 159 DE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~ 238 (436)
|||+++++.+|...+..|...++. ..|++++|||....+..+
T Consensus 222 DEADR~LDMGFk~tL~~Ii~~lP~--------------------------------------~RQTLLFSATqt~svkdL 263 (758)
T KOG0343|consen 222 DEADRMLDMGFKKTLNAIIENLPK--------------------------------------KRQTLLFSATQTKSVKDL 263 (758)
T ss_pred ccHHHHHHHhHHHHHHHHHHhCCh--------------------------------------hheeeeeecccchhHHHH
Confidence 999999999999999999988754 347899999999999999
Q ss_pred hccccCCceeeecCCcc-ccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeE
Q 013826 239 AQLDLHHPLFLTTGETR-YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKI 317 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~ 317 (436)
+...+.+|..+...... ...+..++.+++..+...|..+|..+++.+...+.|||+.|.+++..+++.+..+. ++.++
T Consensus 264 aRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlr-pg~~l 342 (758)
T KOG0343|consen 264 ARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLR-PGIPL 342 (758)
T ss_pred HHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcC-CCCce
Confidence 99999999888766333 66788888999999999999999999999999999999999999999999998873 55889
Q ss_pred EEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecch
Q 013826 318 KEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 397 (436)
Q Consensus 318 ~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 397 (436)
..+||.|....|.++...|.....-||+||++.++|+|+|.+++||.++-|..+..|++|+||+.|.+..|.++++..+.
T Consensus 343 ~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~ps 422 (758)
T KOG0343|consen 343 LALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPS 422 (758)
T ss_pred eeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHH
Q 013826 398 EVKR 401 (436)
Q Consensus 398 ~~~~ 401 (436)
+.+.
T Consensus 423 EeE~ 426 (758)
T KOG0343|consen 423 EEEA 426 (758)
T ss_pred hHHH
Confidence 8443
No 23
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.5e-46 Score=331.24 Aligned_cols=349 Identities=29% Similarity=0.441 Sum_probs=286.8
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhc---------CCccEEEEcCCHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---------RCLRALVVLPTRDLALQ 71 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~---------~~~~~lil~P~~~l~~q 71 (436)
.|+..|+|+|+-+++. +..|.+.+.+|+||+|||.++++|++..++.... ..++++|++||++|+.|
T Consensus 92 ~~~~~ptpvQk~sip~----i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Q 167 (482)
T KOG0335|consen 92 SGYTKPTPVQKYSIPI----ISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQ 167 (482)
T ss_pred ccccCCCcceeeccce----eecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhH
Confidence 3788999999666554 4458999999999999999999999999877542 24799999999999999
Q ss_pred HHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccC
Q 013826 72 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLE 151 (436)
Q Consensus 72 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~ 151 (436)
++.+.+++.-..++......|+.+...+. +.+..+|+|+++||++|.+++++.. +.++
T Consensus 168 i~nea~k~~~~s~~~~~~~ygg~~~~~q~---------------------~~~~~gcdIlvaTpGrL~d~~e~g~-i~l~ 225 (482)
T KOG0335|consen 168 IYNEARKFSYLSGMKSVVVYGGTDLGAQL---------------------RFIKRGCDILVATPGRLKDLIERGK-ISLD 225 (482)
T ss_pred HHHHHHhhcccccceeeeeeCCcchhhhh---------------------hhhccCccEEEecCchhhhhhhcce-eehh
Confidence 99999999887788888888886655443 2355678999999999999999854 8899
Q ss_pred CccEEEEehhhHHhh-HhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccc
Q 013826 152 HLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230 (436)
Q Consensus 152 ~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat 230 (436)
+++++|+|||+.|++ .+|...++.+......+.. ...|.+++|||
T Consensus 226 ~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~----------------------------------~~~qt~mFSAt 271 (482)
T KOG0335|consen 226 NCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPK----------------------------------NNRQTLLFSAT 271 (482)
T ss_pred hCcEEEecchHHhhhhccccccHHHHhcccCCCCc----------------------------------cceeEEEEecc
Confidence 999999999999999 6899999998877655332 34588999999
Q ss_pred cccCchhhhccccCCc-eeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcC----CC-----cEEEEcCCchhH
Q 013826 231 LTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG----EE-----KCIVFTSSVEST 300 (436)
Q Consensus 231 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~-----~~lvf~~~~~~~ 300 (436)
.+.........++.+. +.+......... ..+..-........|...+.+++.... .+ +++|||.+++.|
T Consensus 272 fp~~iq~l~~~fl~~~yi~laV~rvg~~~-~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~ 350 (482)
T KOG0335|consen 272 FPKEIQRLAADFLKDNYIFLAVGRVGSTS-ENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGA 350 (482)
T ss_pred CChhhhhhHHHHhhccceEEEEeeecccc-ccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchh
Confidence 9999888888877763 333322222222 333333333444556666666665432 33 899999999999
Q ss_pred HHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhh
Q 013826 301 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 380 (436)
Q Consensus 301 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR 380 (436)
..++..|...+ +++..+|+.....+|.+.++.|++|.+.+||||++.++|+|+|++++||+|+.|....+|++|+||
T Consensus 351 d~l~~~l~~~~---~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGR 427 (482)
T KOG0335|consen 351 DELAAFLSSNG---YPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGR 427 (482)
T ss_pred hHHHHHHhcCC---CCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccc
Confidence 99999999877 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCceEEEEecchhHHHHHHHHHHhcCCC
Q 013826 381 TARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS 413 (436)
Q Consensus 381 ~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (436)
+||.|+.|.+..|++..+....+.+.+.+...+
T Consensus 428 TGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~ 460 (482)
T KOG0335|consen 428 TGRVGNGGRATSFFNEKNQNIAKALVEILTEAN 460 (482)
T ss_pred cccCCCCceeEEEeccccchhHHHHHHHHHHhc
Confidence 999999999999999877766666666665554
No 24
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.4e-45 Score=350.76 Aligned_cols=332 Identities=23% Similarity=0.362 Sum_probs=248.1
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
|||+.|+|+|.++++.++. ++++++.+|||+|||+++++|++. .+..+||++|+++|+.|+.+.+...
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~l~-------~~~~~lVi~P~~~L~~dq~~~l~~~- 74 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPALC-------SDGITLVISPLISLMEDQVLQLKAS- 74 (470)
T ss_pred cCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHHHH-------cCCcEEEEecHHHHHHHHHHHHHHc-
Confidence 7999999999999888775 789999999999999999988874 2347999999999999999888765
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhh-ccCCcEEEeCchhHHHHhhcCCCc-ccCCccEEEE
Q 013826 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRGF-TLEHLCYLVV 158 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~T~~~l~~~l~~~~~~-~~~~~~~iIi 158 (436)
|+....+.++....... .++..+ ...++|+++||+.+.........+ ...+++++||
T Consensus 75 ---gi~~~~l~~~~~~~~~~------------------~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iVi 133 (470)
T TIGR00614 75 ---GIPATFLNSSQSKEQQK------------------NVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAV 133 (470)
T ss_pred ---CCcEEEEeCCCCHHHHH------------------HHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEE
Confidence 67777777776544321 111112 234699999999975422110112 4678999999
Q ss_pred ehhhHHhhHh--HhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCch
Q 013826 159 DETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236 (436)
Q Consensus 159 DE~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 236 (436)
||||++.+++ |...+..+...... ++..+.+++|||+.+...
T Consensus 134 DEaH~i~~~g~~fr~~~~~l~~l~~~------------------------------------~~~~~~l~lTAT~~~~~~ 177 (470)
T TIGR00614 134 DEAHCISQWGHDFRPDYKALGSLKQK------------------------------------FPNVPIMALTATASPSVR 177 (470)
T ss_pred eCCcccCccccccHHHHHHHHHHHHH------------------------------------cCCCceEEEecCCCHHHH
Confidence 9999987654 33333332221111 123467899999987543
Q ss_pred hh--hccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHH-hcCCCcEEEEcCCchhHHHHHHHHhhhccc
Q 013826 237 KL--AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGEL 313 (436)
Q Consensus 237 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~ 313 (436)
.. ....+.++..+........ ..+............+...+. ...+.++||||+++++++.+++.|++.+
T Consensus 178 ~di~~~l~l~~~~~~~~s~~r~n-----l~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g-- 250 (470)
T TIGR00614 178 EDILRQLNLKNPQIFCTSFDRPN-----LYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLG-- 250 (470)
T ss_pred HHHHHHcCCCCCcEEeCCCCCCC-----cEEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcC--
Confidence 32 2233445554443332211 122222222234445555555 4456677999999999999999999876
Q ss_pred ceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEE
Q 013826 314 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393 (436)
Q Consensus 314 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 393 (436)
+.+..+|++|+..+|..+++.|.+|+++|||||+++++|+|+|++++||+++.|.|+..|+|++||+||.|.+|.|+++
T Consensus 251 -~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 251 -IAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred -CCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecchhHHHHHHHHHHh
Q 013826 394 LHKDEVKRFKKLLQKA 409 (436)
Q Consensus 394 ~~~~~~~~~~~~~~~~ 409 (436)
++..|...++.++...
T Consensus 330 ~~~~d~~~~~~~~~~~ 345 (470)
T TIGR00614 330 YAPADINRLRRLLMEE 345 (470)
T ss_pred echhHHHHHHHHHhcC
Confidence 9999988888887654
No 25
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=5.2e-45 Score=360.28 Aligned_cols=339 Identities=19% Similarity=0.239 Sum_probs=248.5
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||++|+++|.++++.+.. |+++++.+|||||||+++++|+++.+... ++.++||++||++|+.|+.+.++.+.
T Consensus 32 ~g~~~p~~~Q~~ai~~il~----G~nvvv~apTGSGKTla~~LPiL~~l~~~--~~~~aL~l~PtraLa~q~~~~l~~l~ 105 (742)
T TIGR03817 32 AGIHRPWQHQARAAELAHA----GRHVVVATGTASGKSLAYQLPVLSALADD--PRATALYLAPTKALAADQLRAVRELT 105 (742)
T ss_pred cCCCcCCHHHHHHHHHHHC----CCCEEEECCCCCcHHHHHHHHHHHHHhhC--CCcEEEEEcChHHHHHHHHHHHHHhc
Confidence 5899999999999887764 89999999999999999999999988764 45689999999999999999999886
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCC---cccCCccEEE
Q 013826 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG---FTLEHLCYLV 157 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~---~~~~~~~~iI 157 (436)
..++.+..+.|+.+.... ..+..+++|+++||+.+...+..... ..+++++++|
T Consensus 106 -~~~i~v~~~~Gdt~~~~r----------------------~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vV 162 (742)
T TIGR03817 106 -LRGVRPATYDGDTPTEER----------------------RWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVV 162 (742)
T ss_pred -cCCeEEEEEeCCCCHHHH----------------------HHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEE
Confidence 336888888888764332 22344579999999999754332111 1378999999
Q ss_pred EehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchh
Q 013826 158 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237 (436)
Q Consensus 158 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 237 (436)
+||+|.+.+ .|..++..++..+...... .....|.+++|||+.+...
T Consensus 163 iDEah~~~g-~fg~~~~~il~rL~ri~~~-------------------------------~g~~~q~i~~SATi~n~~~- 209 (742)
T TIGR03817 163 IDECHSYRG-VFGSHVALVLRRLRRLCAR-------------------------------YGASPVFVLASATTADPAA- 209 (742)
T ss_pred EeChhhccC-ccHHHHHHHHHHHHHHHHh-------------------------------cCCCCEEEEEecCCCCHHH-
Confidence 999999855 4666655555544321110 0023478999999987644
Q ss_pred hhccccCCceeeecCCccccCCccccceeeecc----------------CcCcHHHHHHHHHhcCCCcEEEEcCCchhHH
Q 013826 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICE----------------SKLKPLYLVALLQSLGEEKCIVFTSSVESTH 301 (436)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~ 301 (436)
.....+..+........... ........... ...+...+..+++. +.++||||+|++.++
T Consensus 210 ~~~~l~g~~~~~i~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae 285 (742)
T TIGR03817 210 AASRLIGAPVVAVTEDGSPR--GARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAE 285 (742)
T ss_pred HHHHHcCCCeEEECCCCCCc--CceEEEEecCCccccccccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHH
Confidence 33333444433321111100 00110100000 01233344444443 679999999999999
Q ss_pred HHHHHHhhhc-----ccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHH
Q 013826 302 RLCTLLNHFG-----ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 376 (436)
Q Consensus 302 ~~~~~l~~~~-----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q 376 (436)
.++..+++.. .....+..+||++.+.+|.+++++|++|++++||||++++.|||+|++++||+++.|.+..+|+|
T Consensus 286 ~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~q 365 (742)
T TIGR03817 286 LVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQ 365 (742)
T ss_pred HHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHH
Confidence 9999987641 12357889999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCceEEEEecch--hHHHHHHH
Q 013826 377 RAGRTARAGQLGRCFTLLHKD--EVKRFKKL 405 (436)
Q Consensus 377 ~~GR~~R~~~~g~~~~~~~~~--~~~~~~~~ 405 (436)
|+||+||.|+.|.++++.... |...+.+.
T Consensus 366 RiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~ 396 (742)
T TIGR03817 366 QAGRAGRRGQGALVVLVARDDPLDTYLVHHP 396 (742)
T ss_pred hccccCCCCCCcEEEEEeCCChHHHHHHhCH
Confidence 999999999999999988643 43344433
No 26
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.6e-45 Score=322.62 Aligned_cols=353 Identities=33% Similarity=0.503 Sum_probs=283.7
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh-----cCCccEEEEcCCHHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVLPTRDLALQVKDV 75 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~-----~~~~~~lil~P~~~l~~q~~~~ 75 (436)
|++..|+..|.+++..+++ ++++++.++||||||++|++|+.+.+..-. ..++-+||++||++|+.|+++.
T Consensus 155 m~i~~pTsVQkq~IP~lL~----grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~ 230 (708)
T KOG0348|consen 155 MKISAPTSVQKQAIPVLLE----GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYET 230 (708)
T ss_pred hccCccchHhhcchhhhhc----CcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHH
Confidence 7899999999888776664 999999999999999999999999886632 2567899999999999999999
Q ss_pred HHHhhhhhC-ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCcc
Q 013826 76 FAAIAPAVG-LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 154 (436)
Q Consensus 76 ~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~ 154 (436)
+.++...+. +-.+.+.|+.....+. ++++.+++|+|+||++|.+.+.....+.++.++
T Consensus 231 ~qKLl~~~hWIVPg~lmGGEkkKSEK---------------------ARLRKGiNILIgTPGRLvDHLknT~~i~~s~LR 289 (708)
T KOG0348|consen 231 VQKLLKPFHWIVPGVLMGGEKKKSEK---------------------ARLRKGINILIGTPGRLVDHLKNTKSIKFSRLR 289 (708)
T ss_pred HHHHhcCceEEeeceeecccccccHH---------------------HHHhcCceEEEcCchHHHHHHhccchheeeeee
Confidence 999987653 4446666666543332 467788999999999999999988888999999
Q ss_pred EEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccC
Q 013826 155 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234 (436)
Q Consensus 155 ~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~ 234 (436)
.+|+||++.+++-+|...+..|++...+.... .......-+..+.+++|||+...
T Consensus 290 wlVlDEaDrlleLGfekdit~Il~~v~~~~~~-------------------------e~~~~~lp~q~q~mLlSATLtd~ 344 (708)
T KOG0348|consen 290 WLVLDEADRLLELGFEKDITQILKAVHSIQNA-------------------------ECKDPKLPHQLQNMLLSATLTDG 344 (708)
T ss_pred EEEecchhHHHhccchhhHHHHHHHHhhccch-------------------------hcccccccHHHHhHhhhhhhHHH
Confidence 99999999999999999999999887441110 00001111245789999999999
Q ss_pred chhhhccccCCceeeecCCcc------------------------ccCCccccceeeeccCcCcHHHHHHHHHhc----C
Q 013826 235 PNKLAQLDLHHPLFLTTGETR------------------------YKLPERLESYKLICESKLKPLYLVALLQSL----G 286 (436)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~ 286 (436)
+..+....+++|..+...... ..+++.........+...+...|.+++.+. .
T Consensus 345 V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~ 424 (708)
T KOG0348|consen 345 VNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEE 424 (708)
T ss_pred HHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhh
Confidence 999999999998877611111 222233333344455566666676666543 4
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhhcc-------------------cceeEEEeccccchHHHHHHHHHHhcCCeeEEEec
Q 013826 287 EEKCIVFTSSVESTHRLCTLLNHFGE-------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 347 (436)
Q Consensus 287 ~~~~lvf~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t 347 (436)
..++|||+.+.+..+.-+..|.+.-. .+..+..+||+|...+|..+++.|...+..||+||
T Consensus 425 ~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcT 504 (708)
T KOG0348|consen 425 KQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCT 504 (708)
T ss_pred hceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEeh
Confidence 55899999999999998888865421 22468899999999999999999999988899999
Q ss_pred CCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhHHHHH
Q 013826 348 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 403 (436)
Q Consensus 348 ~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~ 403 (436)
++.++|+|+|.+++||.|++|.++.+|++|+||..|.|.+|.++.|..+.+.+...
T Consensus 505 DVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~ 560 (708)
T KOG0348|consen 505 DVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVN 560 (708)
T ss_pred hhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887433
No 27
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-44 Score=313.96 Aligned_cols=364 Identities=29% Similarity=0.423 Sum_probs=304.6
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh-----cCCccEEEEcCCHHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVLPTRDLALQVKDV 75 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~-----~~~~~~lil~P~~~l~~q~~~~ 75 (436)
+|+..|+-.|..|+.-+++ |++++..|.||||||.+|++|+++.+.+.+ ..++.++|++||++|+.|.+..
T Consensus 37 lG~ekpTlIQs~aIplaLE----gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~v 112 (569)
T KOG0346|consen 37 LGWEKPTLIQSSAIPLALE----GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKV 112 (569)
T ss_pred hCcCCcchhhhcccchhhc----CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHH
Confidence 4899999999777666654 899999999999999999999999887643 3567899999999999999998
Q ss_pred HHHhhhhhC--ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCc
Q 013826 76 FAAIAPAVG--LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHL 153 (436)
Q Consensus 76 ~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~ 153 (436)
+.++...++ +.+.-+..+.+..... ..+...++|+|+||..+...+.......+..+
T Consensus 113 iekL~~~c~k~lr~~nl~s~~sdsv~~---------------------~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l 171 (569)
T KOG0346|consen 113 IEKLVEYCSKDLRAINLASSMSDSVNS---------------------VALMDLPDIVVATPAKLLRHLAAGVLEYLDSL 171 (569)
T ss_pred HHHHHHHHHHhhhhhhhhcccchHHHH---------------------HHHccCCCeEEeChHHHHHHHhhccchhhhhe
Confidence 887765553 3333333333322222 23444579999999999999988765678899
Q ss_pred cEEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeecccccc
Q 013826 154 CYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233 (436)
Q Consensus 154 ~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~ 233 (436)
.++|+|||+.+++-+|.+.+..+...++ +..|.+++|||+..
T Consensus 172 ~~LVvDEADLllsfGYeedlk~l~~~LP--------------------------------------r~~Q~~LmSATl~d 213 (569)
T KOG0346|consen 172 SFLVVDEADLLLSFGYEEDLKKLRSHLP--------------------------------------RIYQCFLMSATLSD 213 (569)
T ss_pred eeEEechhhhhhhcccHHHHHHHHHhCC--------------------------------------chhhheeehhhhhh
Confidence 9999999999999999988888887764 24578999999999
Q ss_pred CchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHh-cCCCcEEEEcCCchhHHHHHHHHhhhcc
Q 013826 234 DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGE 312 (436)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~lvf~~~~~~~~~~~~~l~~~~~ 312 (436)
++..+-...+.+|.+........+.+.....|.+.+....|...++.+++. .-.++.|||+|+++.|.++.-.|+++|
T Consensus 214 Dv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFG- 292 (569)
T KOG0346|consen 214 DVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFG- 292 (569)
T ss_pred HHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhC-
Confidence 999999999999999887777777888899999999999999999888864 367899999999999999999999999
Q ss_pred cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-----------------------------------CcccccCCC
Q 013826 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----------------------------------AMTRGMDVE 357 (436)
Q Consensus 313 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-----------------------------------~~~~Gidi~ 357 (436)
+..++++|+++...|.-+++.|..|-.+++|+|+ -.++|||+.
T Consensus 293 --iksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~ 370 (569)
T KOG0346|consen 293 --IKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFH 370 (569)
T ss_pred --cHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccch
Confidence 9999999999999999999999999999999998 134799999
Q ss_pred CCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhHH---HHHHHHHHh----cCCCCCCCCCChhhhhhhhhc
Q 013826 358 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQKA----DNDSCPIHSIPSSLIESLRPV 430 (436)
Q Consensus 358 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 430 (436)
.+.+|++||.|.++..|++|+||.+|.+++|.++.|+.+.+.. +++.+.+.. ..+.+.++++..+.++.|+-.
T Consensus 371 ~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~~~~~~~qilqPY~f~~eevesfryR 450 (569)
T KOG0346|consen 371 HVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKDENRQEGRQILQPYQFRMEEVESFRYR 450 (569)
T ss_pred heeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhhHHhhcCccccccccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998765 555554442 222356667777777777543
No 28
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.5e-45 Score=312.14 Aligned_cols=354 Identities=29% Similarity=0.463 Sum_probs=292.8
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHh-----hcCCccEEEEcCCHHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRDLALQVKDV 75 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~-----~~~~~~~lil~P~~~l~~q~~~~ 75 (436)
+||.+|+|.|.+|+.- +++|.+++..|.||+|||+.++++....+... ...++.+|+++||++|+.|+..+
T Consensus 238 ~GFqKPtPIqSQaWPI----~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e 313 (629)
T KOG0336|consen 238 TGFQKPTPIQSQAWPI----LLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGE 313 (629)
T ss_pred ccCCCCCcchhcccce----eecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhH
Confidence 5999999999887654 45699999999999999999988865544332 23567899999999999999988
Q ss_pred HHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccE
Q 013826 76 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY 155 (436)
Q Consensus 76 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~ 155 (436)
...+.- .|....++.|+.....++.. +..+.+|+++||++|..+...+. .++.++.+
T Consensus 314 ~~kysy-ng~ksvc~ygggnR~eqie~---------------------lkrgveiiiatPgrlndL~~~n~-i~l~siTY 370 (629)
T KOG0336|consen 314 VKKYSY-NGLKSVCVYGGGNRNEQIED---------------------LKRGVEIIIATPGRLNDLQMDNV-INLASITY 370 (629)
T ss_pred HhHhhh-cCcceEEEecCCCchhHHHH---------------------HhcCceEEeeCCchHhhhhhcCe-eeeeeeEE
Confidence 887743 37777777777776666543 44567999999999999888755 78999999
Q ss_pred EEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCc
Q 013826 156 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 235 (436)
Q Consensus 156 iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~ 235 (436)
+|+|||+.|++.+|...+..++--.+ |..++++.|||.++.+
T Consensus 371 lVlDEADrMLDMgFEpqIrkilldiR--------------------------------------PDRqtvmTSATWP~~V 412 (629)
T KOG0336|consen 371 LVLDEADRMLDMGFEPQIRKILLDIR--------------------------------------PDRQTVMTSATWPEGV 412 (629)
T ss_pred EEecchhhhhcccccHHHHHHhhhcC--------------------------------------CcceeeeecccCchHH
Confidence 99999999999999988888775443 4557899999999999
Q ss_pred hhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhc-CCCcEEEEcCCchhHHHHHHHHhhhcccc
Q 013826 236 NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELR 314 (436)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~lvf~~~~~~~~~~~~~l~~~~~~~ 314 (436)
..+..-.+++|..+-.+......-..+....+......+...+..+++.. ...|+||||.+...|..+..-|.=.+
T Consensus 413 rrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~g--- 489 (629)
T KOG0336|consen 413 RRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKG--- 489 (629)
T ss_pred HHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcc---
Confidence 99999999999876544433333333344446666677777777777765 46799999999998888877765434
Q ss_pred eeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEe
Q 013826 315 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394 (436)
Q Consensus 315 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~ 394 (436)
+..-.+||.-...+|+..++.|++|+.+|||+|+..++|+|+|++++|++|+.|.++.+|++|+||.||.|+.|..++|+
T Consensus 490 i~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~l 569 (629)
T KOG0336|consen 490 ISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFL 569 (629)
T ss_pred cchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEE
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhcCCCCCCCCCChhhhh
Q 013826 395 HKDEVKRFKKLLQKADNDSCPIHSIPSSLIE 425 (436)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (436)
...|..+..++++.++... +++|+++..
T Consensus 570 t~~D~~~a~eLI~ILe~ae---QevPdeL~~ 597 (629)
T KOG0336|consen 570 TRNDWSMAEELIQILERAE---QEVPDELVR 597 (629)
T ss_pred ehhhHHHHHHHHHHHHHhh---hhCcHHHHH
Confidence 9999999999999887665 556665543
No 29
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.5e-43 Score=347.85 Aligned_cols=331 Identities=21% Similarity=0.287 Sum_probs=246.0
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
||+..+||+|.+++..++. ++++++.+|||+|||+++++|++. ....+|||+|+++|+.++...+...
T Consensus 456 FG~~sFRp~Q~eaI~aiL~----GrDVLVimPTGSGKSLcYQLPAL~-------~~GiTLVISPLiSLmqDQV~~L~~~- 523 (1195)
T PLN03137 456 FGNHSFRPNQREIINATMS----GYDVFVLMPTGGGKSLTYQLPALI-------CPGITLVISPLVSLIQDQIMNLLQA- 523 (1195)
T ss_pred cCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCccHHHHHHHHHHH-------cCCcEEEEeCHHHHHHHHHHHHHhC-
Confidence 7999999999998887764 899999999999999999999884 2347999999999998666666553
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhh---ccCCcEEEeCchhHHH---HhhcCCCc-ccCCc
Q 013826 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL---QSAVDILVATPGRLMD---HINATRGF-TLEHL 153 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Iii~T~~~l~~---~l~~~~~~-~~~~~ 153 (436)
|+....+.++......... ++.. ...++|+++||++|.. ++.....+ ....+
T Consensus 524 ---GI~Aa~L~s~~s~~eq~~i------------------lr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~L 582 (1195)
T PLN03137 524 ---NIPAASLSAGMEWAEQLEI------------------LQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLL 582 (1195)
T ss_pred ---CCeEEEEECCCCHHHHHHH------------------HHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccc
Confidence 7888888888776544321 1121 1357999999999852 12111111 23458
Q ss_pred cEEEEehhhHHhhHh--HhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeecccc
Q 013826 154 CYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231 (436)
Q Consensus 154 ~~iIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~ 231 (436)
.++||||||++..++ |......+-.+... ++..+.+++|||.
T Consensus 583 slIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~------------------------------------fp~vPilALTATA 626 (1195)
T PLN03137 583 ARFVIDEAHCVSQWGHDFRPDYQGLGILKQK------------------------------------FPNIPVLALTATA 626 (1195)
T ss_pred ceeccCcchhhhhcccchHHHHHHHHHHHHh------------------------------------CCCCCeEEEEecC
Confidence 899999999998765 33333222111100 1234678999999
Q ss_pred ccCchhhhc--cccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHh-cCCCcEEEEcCCchhHHHHHHHHh
Q 013826 232 TQDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS-LGEEKCIVFTSSVESTHRLCTLLN 308 (436)
Q Consensus 232 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~lvf~~~~~~~~~~~~~l~ 308 (436)
+......+. ..+.++.++.....+.. ..+.+..........+..++.. ..+.++||||.+++.++.++..|+
T Consensus 627 T~~V~eDI~~~L~l~~~~vfr~Sf~RpN-----L~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~ 701 (1195)
T PLN03137 627 TASVKEDVVQALGLVNCVVFRQSFNRPN-----LWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQ 701 (1195)
T ss_pred CHHHHHHHHHHcCCCCcEEeecccCccc-----eEEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHH
Confidence 876554222 33444444433322211 1222222222223345555543 346689999999999999999999
Q ss_pred hhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCc
Q 013826 309 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388 (436)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g 388 (436)
+.+ +.+..+|++|+..+|..+++.|.+|+++|||||.++++|||+|++++||+++.|.|+..|+|++||+||.|.+|
T Consensus 702 ~~G---ika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g 778 (1195)
T PLN03137 702 EFG---HKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRS 778 (1195)
T ss_pred HCC---CCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCc
Confidence 877 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecchhHHHHHHHHHH
Q 013826 389 RCFTLLHKDEVKRFKKLLQK 408 (436)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~ 408 (436)
.|++|++..|...++.+++.
T Consensus 779 ~cILlys~~D~~~~~~lI~~ 798 (1195)
T PLN03137 779 SCVLYYSYSDYIRVKHMISQ 798 (1195)
T ss_pred eEEEEecHHHHHHHHHHHhc
Confidence 99999999998888888764
No 30
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.9e-43 Score=344.51 Aligned_cols=329 Identities=22% Similarity=0.333 Sum_probs=246.8
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
|||..++|+|.+++..++. ++++++.+|||+|||++++++++. ....++|++|+++|+.|+.+.+...
T Consensus 21 fG~~~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpal~-------~~g~tlVisPl~sL~~dqv~~l~~~- 88 (607)
T PRK11057 21 FGYQQFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPALV-------LDGLTLVVSPLISLMKDQVDQLLAN- 88 (607)
T ss_pred cCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHH-------cCCCEEEEecHHHHHHHHHHHHHHc-
Confidence 7999999999999888764 899999999999999999988873 2347999999999999999888865
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhh-ccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEe
Q 013826 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 159 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiD 159 (436)
|+......+.......... +... ....+++++||+.+....... .+...+++++|||
T Consensus 89 ---gi~~~~~~s~~~~~~~~~~------------------~~~~~~g~~~il~~tPe~l~~~~~~~-~l~~~~l~~iVID 146 (607)
T PRK11057 89 ---GVAAACLNSTQTREQQLEV------------------MAGCRTGQIKLLYIAPERLMMDNFLE-HLAHWNPALLAVD 146 (607)
T ss_pred ---CCcEEEEcCCCCHHHHHHH------------------HHHHhCCCCcEEEEChHHhcChHHHH-HHhhCCCCEEEEe
Confidence 6777777776654433211 1111 234689999999986322111 1334578999999
Q ss_pred hhhHHhhHh--HhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchh
Q 013826 160 ETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237 (436)
Q Consensus 160 E~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 237 (436)
|||++..++ |...+..+-..... ++..+.+++|||++.....
T Consensus 147 EaH~i~~~G~~fr~~y~~L~~l~~~------------------------------------~p~~~~v~lTAT~~~~~~~ 190 (607)
T PRK11057 147 EAHCISQWGHDFRPEYAALGQLRQR------------------------------------FPTLPFMALTATADDTTRQ 190 (607)
T ss_pred CccccccccCcccHHHHHHHHHHHh------------------------------------CCCCcEEEEecCCChhHHH
Confidence 999987653 22222222111100 1234678999999876533
Q ss_pred --hhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccce
Q 013826 238 --LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRI 315 (436)
Q Consensus 238 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~ 315 (436)
.....+.++...........+ .+... ....+...+...+....++++||||+++++++.+++.|++.+ +
T Consensus 191 di~~~l~l~~~~~~~~~~~r~nl-----~~~v~-~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g---~ 261 (607)
T PRK11057 191 DIVRLLGLNDPLIQISSFDRPNI-----RYTLV-EKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRG---I 261 (607)
T ss_pred HHHHHhCCCCeEEEECCCCCCcc-----eeeee-eccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCC---C
Confidence 222334555544333222111 12221 222344556666777778899999999999999999999876 8
Q ss_pred eEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEec
Q 013826 316 KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395 (436)
Q Consensus 316 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 395 (436)
.+..+|++|+..+|..+++.|.+|+.+|||+|+++++|+|+|++++||+++.|.|...|+|++||+||.|.+|.|+++++
T Consensus 262 ~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~ 341 (607)
T PRK11057 262 SAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYD 341 (607)
T ss_pred CEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHH
Q 013826 396 KDEVKRFKKLLQK 408 (436)
Q Consensus 396 ~~~~~~~~~~~~~ 408 (436)
..|...++.++..
T Consensus 342 ~~d~~~~~~~~~~ 354 (607)
T PRK11057 342 PADMAWLRRCLEE 354 (607)
T ss_pred HHHHHHHHHHHhc
Confidence 9988777766643
No 31
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-43 Score=313.46 Aligned_cols=354 Identities=27% Similarity=0.430 Sum_probs=307.7
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh----cCCccEEEEcCCHHHHHHHHHHHH
Q 013826 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA----VRCLRALVVLPTRDLALQVKDVFA 77 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~~lil~P~~~l~~q~~~~~~ 77 (436)
.|.+|+|.|-+++..+ +.+.+++-.|-||||||.+++.+++..++..+ ..++..||++||++|+.|++.+++
T Consensus 242 Ey~kptpiq~qalpta----lsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaK 317 (731)
T KOG0339|consen 242 EYEKPTPIQCQALPTA----LSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAK 317 (731)
T ss_pred hcccCCcccccccccc----cccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHH
Confidence 4788999997765544 45899999999999999999999888876653 367889999999999999999999
Q ss_pred HhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEE
Q 013826 78 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 157 (436)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iI 157 (436)
++++..|+++..++|+.+..++... +..++.|+||||++|..++.- ...++.+..++|
T Consensus 318 kf~K~ygl~~v~~ygGgsk~eQ~k~---------------------Lk~g~EivVaTPgRlid~Vkm-Katn~~rvS~LV 375 (731)
T KOG0339|consen 318 KFGKAYGLRVVAVYGGGSKWEQSKE---------------------LKEGAEIVVATPGRLIDMVKM-KATNLSRVSYLV 375 (731)
T ss_pred HhhhhccceEEEeecCCcHHHHHHh---------------------hhcCCeEEEechHHHHHHHHh-hcccceeeeEEE
Confidence 9999999999999999998877654 446789999999999998875 347799999999
Q ss_pred EehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchh
Q 013826 158 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237 (436)
Q Consensus 158 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 237 (436)
+||+++|++.+|...+..|..+.+. ..|.+++|||....+..
T Consensus 376 ~DEadrmfdmGfe~qVrSI~~hirp--------------------------------------drQtllFsaTf~~kIe~ 417 (731)
T KOG0339|consen 376 LDEADRMFDMGFEPQVRSIKQHIRP--------------------------------------DRQTLLFSATFKKKIEK 417 (731)
T ss_pred EechhhhhccccHHHHHHHHhhcCC--------------------------------------cceEEEeeccchHHHHH
Confidence 9999999999999999999988754 45789999999999999
Q ss_pred hhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhc-CCCcEEEEcCCchhHHHHHHHHhhhccccee
Q 013826 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIK 316 (436)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~ 316 (436)
+++-.+.+|+.+....-........+...+......|...+...|... ..+++|+|+.....++.++..|+-.+ +.
T Consensus 418 lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~---~~ 494 (731)
T KOG0339|consen 418 LARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKG---FN 494 (731)
T ss_pred HHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhcccc---ce
Confidence 999999999887665433333444455566666677777777666554 67899999999999999999998766 99
Q ss_pred EEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecc
Q 013826 317 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 396 (436)
Q Consensus 317 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 396 (436)
+..+||+|+..+|.+++..|+.+.+.|||+|+...+|+|+|.+..||+++...++..+.||+||.||.|.+|.+|++++.
T Consensus 495 v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTe 574 (731)
T KOG0339|consen 495 VSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTE 574 (731)
T ss_pred eeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEech
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCCChhhhh
Q 013826 397 DEVKRFKKLLQKADNDSCPIHSIPSSLIE 425 (436)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (436)
.|.....++...++..+ +.+|+++.+
T Consensus 575 KDa~fAG~LVnnLe~ag---QnVP~~l~d 600 (731)
T KOG0339|consen 575 KDAEFAGHLVNNLEGAG---QNVPDELMD 600 (731)
T ss_pred hhHHHhhHHHHHHhhcc---ccCChHHHH
Confidence 99999999999998887 566666544
No 32
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-44 Score=320.05 Aligned_cols=367 Identities=30% Similarity=0.456 Sum_probs=283.2
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh----------cCCcc--EEEEcCCHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA----------VRCLR--ALVVLPTRDL 68 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~----------~~~~~--~lil~P~~~l 68 (436)
+||.+|++.|.-.+..++. ...+++-.|.||||||+++-+|+++.+.... .++++ .||++||++|
T Consensus 199 ~gFs~Pt~IQsl~lp~ai~---gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTREL 275 (731)
T KOG0347|consen 199 LGFSRPTEIQSLVLPAAIR---GKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTREL 275 (731)
T ss_pred cCCCCCccchhhcccHhhc---cchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHH
Confidence 6999999999766655543 2389999999999999999999998543321 23445 9999999999
Q ss_pred HHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCc
Q 013826 69 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 148 (436)
Q Consensus 69 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~ 148 (436)
+.|+...+..++...++.+..++|+.....+.. .+...++|+|+||++|+.++.....+
T Consensus 276 a~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqR---------------------lL~~~p~IVVATPGRlweli~e~n~~ 334 (731)
T KOG0347|consen 276 AHQVKQHLKAIAEKTQIRVASITGGLAVQKQQR---------------------LLNQRPDIVVATPGRLWELIEEDNTH 334 (731)
T ss_pred HHHHHHHHHHhccccCeEEEEeechhHHHHHHH---------------------HHhcCCCEEEecchHHHHHHHhhhhh
Confidence 999999999999999999999999998766632 33446799999999999999876542
Q ss_pred --ccCCccEEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeee
Q 013826 149 --TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 226 (436)
Q Consensus 149 --~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (436)
.++++.++|+||+++|+..++-..+..++..+..... .+..|.++
T Consensus 335 l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~---------------------------------~~qrQTlV 381 (731)
T KOG0347|consen 335 LGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQK---------------------------------NRQRQTLV 381 (731)
T ss_pred hhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhc---------------------------------ccccceEE
Confidence 5889999999999999999888888888887752111 14458899
Q ss_pred eccccccCchhhh----------------------ccccC-CceeeecCCccccCCccccceeeeccCcCcHHHHHHHHH
Q 013826 227 LSATLTQDPNKLA----------------------QLDLH-HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 283 (436)
Q Consensus 227 ~sat~~~~~~~~~----------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 283 (436)
+|||+.-....-. ..++. .|.++..... ....+.+..-.+.++...+.-+++.++.
T Consensus 382 FSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q-~~ta~~l~Es~I~C~~~eKD~ylyYfl~ 460 (731)
T KOG0347|consen 382 FSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQ-SATASTLTESLIECPPLEKDLYLYYFLT 460 (731)
T ss_pred EEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcc-hhHHHHHHHHhhcCCccccceeEEEEEe
Confidence 9999973311100 01111 1222211111 1111111122233344445555554443
Q ss_pred hcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEE
Q 013826 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 363 (436)
Q Consensus 284 ~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi 363 (436)
.+ .+++|||||+++.+.+++-+|..+. ++...+|+.|....|...+++|+.....|||||++..+|+|+|++++||
T Consensus 461 ry-PGrTlVF~NsId~vKRLt~~L~~L~---i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVI 536 (731)
T KOG0347|consen 461 RY-PGRTLVFCNSIDCVKRLTVLLNNLD---IPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVI 536 (731)
T ss_pred ec-CCceEEEechHHHHHHHHHHHhhcC---CCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEE
Confidence 33 5799999999999999999999877 8899999999999999999999999999999999999999999999999
Q ss_pred EecCCCChhHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHHHhcCCC-CCCCCCChhhhhhhhh
Q 013826 364 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDS-CPIHSIPSSLIESLRP 429 (436)
Q Consensus 364 ~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 429 (436)
+|-.|.+...|++|.||..|.+..|..+.++.+.+...+.++.+-+.... +++.++.......++.
T Consensus 537 HYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lke 603 (731)
T KOG0347|consen 537 HYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKE 603 (731)
T ss_pred EeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876554 6666666555555443
No 33
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.5e-42 Score=339.69 Aligned_cols=329 Identities=21% Similarity=0.330 Sum_probs=248.2
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
|||.++||+|.+++..++. ++++++++|||+|||++++++++. .+..++|++|+.+|+.|+.+.++..
T Consensus 9 fg~~~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpal~-------~~g~~lVisPl~sL~~dq~~~l~~~- 76 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPALL-------LKGLTVVISPLISLMKDQVDQLRAA- 76 (591)
T ss_pred cCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHHHH-------cCCcEEEEcCCHHHHHHHHHHHHHc-
Confidence 7999999999999888775 789999999999999999988773 2346999999999999999888875
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHh-hccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEe
Q 013826 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE-LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 159 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiD 159 (436)
|+.+..++++....... +.+.. .....+|+++||+.+....... .+...+++++|||
T Consensus 77 ---gi~~~~~~s~~~~~~~~------------------~~~~~l~~~~~~il~~tpe~l~~~~~~~-~l~~~~l~~iViD 134 (591)
T TIGR01389 77 ---GVAAAYLNSTLSAKEQQ------------------DIEKALVNGELKLLYVAPERLEQDYFLN-MLQRIPIALVAVD 134 (591)
T ss_pred ---CCcEEEEeCCCCHHHHH------------------HHHHHHhCCCCCEEEEChhHhcChHHHH-HHhcCCCCEEEEe
Confidence 77788787776654432 11111 2345699999999985432211 1345689999999
Q ss_pred hhhHHhhHh--HhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchh
Q 013826 160 ETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237 (436)
Q Consensus 160 E~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 237 (436)
|||++..++ |...+..+...... ++..+.+++|||.+.....
T Consensus 135 EaH~i~~~g~~frp~y~~l~~l~~~------------------------------------~~~~~vi~lTAT~~~~~~~ 178 (591)
T TIGR01389 135 EAHCVSQWGHDFRPEYQRLGSLAER------------------------------------FPQVPRIALTATADAETRQ 178 (591)
T ss_pred CCcccccccCccHHHHHHHHHHHHh------------------------------------CCCCCEEEEEeCCCHHHHH
Confidence 999987643 33322232222111 0223478999998776543
Q ss_pred hhc--cccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccce
Q 013826 238 LAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRI 315 (436)
Q Consensus 238 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~ 315 (436)
... ..+.++..+....... ...........+...+.+.+....+.++||||++++.++.+++.|.+.+ +
T Consensus 179 ~i~~~l~~~~~~~~~~~~~r~------nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g---~ 249 (591)
T TIGR01389 179 DIRELLRLADANEFITSFDRP------NLRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQG---I 249 (591)
T ss_pred HHHHHcCCCCCCeEecCCCCC------CcEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCC---C
Confidence 222 2333443332222111 1111222234456677777777777899999999999999999998776 8
Q ss_pred eEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEec
Q 013826 316 KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395 (436)
Q Consensus 316 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 395 (436)
.+..+|++|+..+|..+++.|.+|+.+|||||+++++|+|+|+++.||+++.|.|...|.|++||+||.|..+.|+++++
T Consensus 250 ~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~ 329 (591)
T TIGR01389 250 SALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYS 329 (591)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHH
Q 013826 396 KDEVKRFKKLLQK 408 (436)
Q Consensus 396 ~~~~~~~~~~~~~ 408 (436)
..|...++.+++.
T Consensus 330 ~~d~~~~~~~i~~ 342 (591)
T TIGR01389 330 PADIALLKRRIEQ 342 (591)
T ss_pred HHHHHHHHHHHhc
Confidence 8887776666543
No 34
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.7e-42 Score=308.24 Aligned_cols=355 Identities=29% Similarity=0.394 Sum_probs=291.2
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh----cCCccEEEEcCCHHHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA----VRCLRALVVLPTRDLALQVKDVF 76 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~~lil~P~~~l~~q~~~~~ 76 (436)
.||..|.|.|.+|+.. ++.+.+++.|+|||+|||+++.+|++..+.... ..+.+++|+.|++.|+.|+++++
T Consensus 154 ~~F~~Pt~iq~~aipv----fl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~ 229 (593)
T KOG0344|consen 154 LGFDEPTPIQKQAIPV----FLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREM 229 (593)
T ss_pred CCCCCCCcccchhhhh----hhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHH
Confidence 3799999999876554 445899999999999999999999999887765 45678999999999999999999
Q ss_pred HHhh--hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCC-CcccCCc
Q 013826 77 AAIA--PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLEHL 153 (436)
Q Consensus 77 ~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~-~~~~~~~ 153 (436)
.++. ...+..+...........+.... ....++|+++||..+..++.... ...++++
T Consensus 230 ~k~~~~~~t~~~a~~~~~~~~~~qk~a~~--------------------~~~k~dili~TP~ri~~~~~~~~~~idl~~V 289 (593)
T KOG0344|consen 230 RKYSIDEGTSLRAAQFSKPAYPSQKPAFL--------------------SDEKYDILISTPMRIVGLLGLGKLNIDLSKV 289 (593)
T ss_pred HhcCCCCCCchhhhhcccccchhhccchh--------------------HHHHHHHHhcCHHHHHHHhcCCCccchhhee
Confidence 9997 43344443333332222211111 11224899999999988887643 3568899
Q ss_pred cEEEEehhhHHhhH-hHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccc
Q 013826 154 CYLVVDETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232 (436)
Q Consensus 154 ~~iIiDE~h~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~ 232 (436)
..+|+||++.+.++ .|...+..+++.+.++ ....-++|||.+
T Consensus 290 ~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~-------------------------------------~i~~a~FSat~~ 332 (593)
T KOG0344|consen 290 EWLVVDEADLLFEPEFFVEQLADIYSACQSP-------------------------------------DIRVALFSATIS 332 (593)
T ss_pred eeEeechHHhhhChhhHHHHHHHHHHHhcCc-------------------------------------chhhhhhhcccc
Confidence 99999999999999 8999999999988763 234558899999
Q ss_pred cCchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcc
Q 013826 233 QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312 (436)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~ 312 (436)
..+++|......++..+..+.........-+..........|.-.+..++...-..++|||+.+.+.|.++...|. ..
T Consensus 333 ~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~--~~ 410 (593)
T KOG0344|consen 333 VYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELE--IY 410 (593)
T ss_pred HHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhh--hc
Confidence 9999999999998888777766544444444445555566677777777777777899999999999999999985 23
Q ss_pred cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEE
Q 013826 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 392 (436)
Q Consensus 313 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~ 392 (436)
.++.+..+||+.+..+|++.+++|+.|++++||||+.+++|+|+.+++.||++|.|.+..+|++|+||.||.|+.|.+++
T Consensus 411 ~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Ait 490 (593)
T KOG0344|consen 411 DNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAIT 490 (593)
T ss_pred cCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEE
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecchhHHHHHHHHHHhcCCCCCCCC
Q 013826 393 LLHKDEVKRFKKLLQKADNDSCPIHS 418 (436)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (436)
||.+.|.+.+..+..-....+|++..
T Consensus 491 fytd~d~~~ir~iae~~~~sG~evpe 516 (593)
T KOG0344|consen 491 FYTDQDMPRIRSIAEVMEQSGCEVPE 516 (593)
T ss_pred EeccccchhhhhHHHHHHHcCCcchH
Confidence 99999999999999998888876544
No 35
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-42 Score=290.51 Aligned_cols=338 Identities=24% Similarity=0.348 Sum_probs=281.7
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
|+|..|+..|..|+.-++.+ ..++.|.++..|+|||.++.+.++.++... ...+.++.++|+++|+.|+.+-+.+.+
T Consensus 108 M~F~kPskIQe~aLPlll~~--Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-~~~PQ~iCLaPtrELA~Q~~eVv~eMG 184 (477)
T KOG0332|consen 108 MKFQKPSKIQETALPLLLAE--PPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-VVVPQCICLAPTRELAPQTGEVVEEMG 184 (477)
T ss_pred hccCCcchHHHhhcchhhcC--CchhhhhhhcCCCchhHHHHHHHHHhcCcc-ccCCCceeeCchHHHHHHHHHHHHHhc
Confidence 79999999997776655542 247899999999999999999999888665 356789999999999999999999998
Q ss_pred hhhCceEEEeccCcch--hHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEE
Q 013826 81 PAVGLSVGLAVGQSSI--ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 158 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIi 158 (436)
++.++.......+... -..+ ..+|+|+||+.+.+++.+-.-+.++.+.++|+
T Consensus 185 Kf~~ita~yair~sk~~rG~~i--------------------------~eqIviGTPGtv~Dlm~klk~id~~kikvfVl 238 (477)
T KOG0332|consen 185 KFTELTASYAIRGSKAKRGNKL--------------------------TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVL 238 (477)
T ss_pred CceeeeEEEEecCcccccCCcc--------------------------hhheeeCCCccHHHHHHHHHhhChhhceEEEe
Confidence 8877666665555411 1111 12899999999999988755567889999999
Q ss_pred ehhhHHhhH-hHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchh
Q 013826 159 DETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237 (436)
Q Consensus 159 DE~h~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 237 (436)
|||+.+++. +|.+.-..+..... +..|.+++|||.......
T Consensus 239 DEAD~Mi~tqG~~D~S~rI~~~lP--------------------------------------~~~QllLFSATf~e~V~~ 280 (477)
T KOG0332|consen 239 DEADVMIDTQGFQDQSIRIMRSLP--------------------------------------RNQQLLLFSATFVEKVAA 280 (477)
T ss_pred cchhhhhhcccccccchhhhhhcC--------------------------------------CcceEEeeechhHHHHHH
Confidence 999998775 45555444444432 245889999999999999
Q ss_pred hhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeE
Q 013826 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKI 317 (436)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~ 317 (436)
++...+.++..+....+...+....+.|........|...+.++.....-+..+|||.++..|.+++..+++.| +.+
T Consensus 281 Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~G---h~V 357 (477)
T KOG0332|consen 281 FALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEG---HQV 357 (477)
T ss_pred HHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcC---cee
Confidence 99999999998888888877777777677777778899998888777777899999999999999999999887 999
Q ss_pred EEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCC------ChhHHHHHhhhcccCCCCceEE
Q 013826 318 KEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------YIKTYIHRAGRTARAGQLGRCF 391 (436)
Q Consensus 318 ~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~------s~~~~~Q~~GR~~R~~~~g~~~ 391 (436)
..+||+|...+|+.++..|+.|..+|||+|+++.+|+|++.+++||+|+.|. ....|++|+||+||.|++|.++
T Consensus 358 ~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~ 437 (477)
T KOG0332|consen 358 SLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAI 437 (477)
T ss_pred EEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEE
Confidence 9999999999999999999999999999999999999999999999999984 5889999999999999999999
Q ss_pred EEecchhHHHHHHHHHH
Q 013826 392 TLLHKDEVKRFKKLLQK 408 (436)
Q Consensus 392 ~~~~~~~~~~~~~~~~~ 408 (436)
-++++.+.....+.+++
T Consensus 438 n~v~~~~s~~~mn~iq~ 454 (477)
T KOG0332|consen 438 NLVDDKDSMNIMNKIQK 454 (477)
T ss_pred EeecccCcHHHHHHHHH
Confidence 99988765544433333
No 36
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.2e-40 Score=335.95 Aligned_cols=333 Identities=20% Similarity=0.220 Sum_probs=230.8
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh-----cCCccEEEEcCCHHHHHHHHHHH
Q 013826 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVLPTRDLALQVKDVF 76 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~-----~~~~~~lil~P~~~l~~q~~~~~ 76 (436)
+|..|+|+|.++++.+. .++++++++|||||||+++++++++.+.... ..+.++||++|+++|+.|+.+.+
T Consensus 29 ~~~~~tpiQ~~Ai~~il----~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L 104 (876)
T PRK13767 29 KFGTFTPPQRYAIPLIH----EGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNL 104 (876)
T ss_pred ccCCCCHHHHHHHHHHH----cCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHH
Confidence 57789999999988765 4899999999999999999999998876432 23457999999999999998765
Q ss_pred HHh-------h----hhh-CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhc
Q 013826 77 AAI-------A----PAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 144 (436)
Q Consensus 77 ~~~-------~----~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~ 144 (436)
... + ... ++.+...+|+.+...+.. .+...++|+|+||++|..++..
T Consensus 105 ~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~---------------------~l~~~p~IlVtTPE~L~~ll~~ 163 (876)
T PRK13767 105 EEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQK---------------------MLKKPPHILITTPESLAILLNS 163 (876)
T ss_pred HHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHH---------------------HHhCCCCEEEecHHHHHHHhcC
Confidence 532 2 122 567888889887655432 2234569999999999877754
Q ss_pred CCC-cccCCccEEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCcccee
Q 013826 145 TRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 223 (436)
Q Consensus 145 ~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (436)
... ..++++++||+||+|.+.+...+.++...+..+..... ...+
T Consensus 164 ~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~----------------------------------~~~q 209 (876)
T PRK13767 164 PKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAG----------------------------------GEFV 209 (876)
T ss_pred hhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcC----------------------------------CCCe
Confidence 321 14789999999999999866555555554444322110 2346
Q ss_pred eeeeccccccCc--hhhhcccc----CCceeeecCCccccCCcccc-c-eeee-ccCcCc----HHHHHHHHHhcCCCcE
Q 013826 224 KMVLSATLTQDP--NKLAQLDL----HHPLFLTTGETRYKLPERLE-S-YKLI-CESKLK----PLYLVALLQSLGEEKC 290 (436)
Q Consensus 224 ~i~~sat~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~----~~~l~~~l~~~~~~~~ 290 (436)
.+++|||+.+.. ..+..... ..+..+.............. . .... ...... ...+.+.++ ..+++
T Consensus 210 ~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~ 287 (876)
T PRK13767 210 RIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIK--EHRTT 287 (876)
T ss_pred EEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccchhHHHHHHHHHHHHh--cCCCE
Confidence 799999986522 12221110 11111111100000000000 0 0000 011111 122223232 35789
Q ss_pred EEEcCCchhHHHHHHHHhhhcc---cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecC
Q 013826 291 IVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 367 (436)
Q Consensus 291 lvf~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~ 367 (436)
||||+|+..|+.++..|++... ....+..+||+++..+|..+++.|++|++++||||+.++.|+|+|++++||+++.
T Consensus 288 LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~ 367 (876)
T PRK13767 288 LIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGS 367 (876)
T ss_pred EEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCC
Confidence 9999999999999999987432 2367999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHhhhcccCCC-CceEEEEec
Q 013826 368 PAYIKTYIHRAGRTARAGQ-LGRCFTLLH 395 (436)
Q Consensus 368 ~~s~~~~~Q~~GR~~R~~~-~g~~~~~~~ 395 (436)
|.+...|+||+||+||.+. .+..+++..
T Consensus 368 P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 368 PKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred CCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999999999643 344555543
No 37
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=7.6e-41 Score=334.66 Aligned_cols=329 Identities=23% Similarity=0.286 Sum_probs=235.9
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+|+.+|+|+|.++++..+. .++++++++|||+|||+++.++++..+. ++.+++|++|+++|+.|+++.+..+.
T Consensus 19 ~g~~~l~p~Q~~ai~~~~~---~g~nvlv~APTGSGKTlia~lail~~l~----~~~kal~i~P~raLa~q~~~~~~~~~ 91 (737)
T PRK02362 19 EGIEELYPPQAEAVEAGLL---DGKNLLAAIPTASGKTLIAELAMLKAIA----RGGKALYIVPLRALASEKFEEFERFE 91 (737)
T ss_pred CCCCcCCHHHHHHHHHHHh---CCCcEEEECCCcchHHHHHHHHHHHHHh----cCCcEEEEeChHHHHHHHHHHHHHhh
Confidence 4899999999999886433 5899999999999999999999998775 34589999999999999999999764
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013826 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
. .|+.+..++|+....... ...++|+|+||+++..++.... .++++++++|+||
T Consensus 92 ~-~g~~v~~~tGd~~~~~~~------------------------l~~~~IiV~Tpek~~~llr~~~-~~l~~v~lvViDE 145 (737)
T PRK02362 92 E-LGVRVGISTGDYDSRDEW------------------------LGDNDIIVATSEKVDSLLRNGA-PWLDDITCVVVDE 145 (737)
T ss_pred c-CCCEEEEEeCCcCccccc------------------------cCCCCEEEECHHHHHHHHhcCh-hhhhhcCEEEEEC
Confidence 3 488898888886433211 1235899999999988887643 4578999999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccC--chhh
Q 013826 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD--PNKL 238 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~--~~~~ 238 (436)
+|.+.+..++..++.++..++... +..|.+++|||+.+. ...|
T Consensus 146 ~H~l~d~~rg~~le~il~rl~~~~-----------------------------------~~~qii~lSATl~n~~~la~w 190 (737)
T PRK02362 146 VHLIDSANRGPTLEVTLAKLRRLN-----------------------------------PDLQVVALSATIGNADELADW 190 (737)
T ss_pred ccccCCCcchHHHHHHHHHHHhcC-----------------------------------CCCcEEEEcccCCCHHHHHHH
Confidence 999987777777777776654321 224789999999652 2223
Q ss_pred hccccCCceeeecCCccccC-Cccc--cceeeeccCcCcHHHHHHHHHh-cCCCcEEEEcCCchhHHHHHHHHhhhcc--
Q 013826 239 AQLDLHHPLFLTTGETRYKL-PERL--ESYKLICESKLKPLYLVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGE-- 312 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~l~~~l~~-~~~~~~lvf~~~~~~~~~~~~~l~~~~~-- 312 (436)
.......+...+........ .... ...........+...+..+... ..++++||||++++.|+.++..|.+...
T Consensus 191 l~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~ 270 (737)
T PRK02362 191 LDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKT 270 (737)
T ss_pred hCCCcccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhc
Confidence 22211110000000000000 0000 0000000001111222222221 2467999999999999999988865421
Q ss_pred -------------------------------cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCe
Q 013826 313 -------------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 361 (436)
Q Consensus 313 -------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~ 361 (436)
...+++.+|++++..+|..+++.|++|.++|||||+++++|+|+|..++
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~V 350 (737)
T PRK02362 271 LTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRV 350 (737)
T ss_pred CCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEE
Confidence 0136899999999999999999999999999999999999999999998
Q ss_pred EEE----ec-----CCCChhHHHHHhhhcccCCCC--ceEEEEecch
Q 013826 362 VVN----YD-----KPAYIKTYIHRAGRTARAGQL--GRCFTLLHKD 397 (436)
Q Consensus 362 vi~----~~-----~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~ 397 (436)
||. |+ .|.+..+|.||+||+||.|.+ |.+++++...
T Consensus 351 VI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 351 IIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred EEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 886 44 477899999999999998876 8999998764
No 38
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=3.9e-40 Score=328.46 Aligned_cols=329 Identities=19% Similarity=0.239 Sum_probs=242.3
Q ss_pred CCCCcccchhHHHHHhhhCCCCCC--CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~--~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 78 (436)
|+|+ |++.|.+|++.+...+..+ .+.++++|||+|||.+++.+++..+..+ .+++|++||+.|+.|+++.++.
T Consensus 448 ~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g----~qvlvLvPT~~LA~Q~~~~f~~ 522 (926)
T TIGR00580 448 FPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG----KQVAVLVPTTLLAQQHFETFKE 522 (926)
T ss_pred CCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC----CeEEEEeCcHHHHHHHHHHHHH
Confidence 5784 9999999999998866543 5899999999999999999888877543 4899999999999999999999
Q ss_pred hhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhcc-CCcEEEeCchhHHHHhhcCCCcccCCccEEE
Q 013826 79 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLV 157 (436)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iI 157 (436)
++...++.+..++|..+..+.. +.+..+.. .++|+|+||..+ . ..+.+++++++|
T Consensus 523 ~~~~~~i~v~~Lsg~~~~~e~~------------------~~~~~l~~g~~dIVIGTp~ll----~--~~v~f~~L~llV 578 (926)
T TIGR00580 523 RFANFPVTIELLSRFRSAKEQN------------------EILKELASGKIDILIGTHKLL----Q--KDVKFKDLGLLI 578 (926)
T ss_pred HhccCCcEEEEEeccccHHHHH------------------HHHHHHHcCCceEEEchHHHh----h--CCCCcccCCEEE
Confidence 9888888888888877644432 11222323 479999998533 2 235688999999
Q ss_pred EehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchh
Q 013826 158 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237 (436)
Q Consensus 158 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 237 (436)
+||+|++.... . ..+.... ...+.+++|||+.+....
T Consensus 579 IDEahrfgv~~-~----~~L~~~~--------------------------------------~~~~vL~~SATpiprtl~ 615 (926)
T TIGR00580 579 IDEEQRFGVKQ-K----EKLKELR--------------------------------------TSVDVLTLSATPIPRTLH 615 (926)
T ss_pred eecccccchhH-H----HHHHhcC--------------------------------------CCCCEEEEecCCCHHHHH
Confidence 99999863221 1 1111111 234689999998776555
Q ss_pred hhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHh-cCCCcEEEEcCCchhHHHHHHHHhhhccccee
Q 013826 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 316 (436)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~ 316 (436)
.......++..+...... ...+..+..... .......+.+. ..+++++|||++++.++.+++.|++.. .+..
T Consensus 616 ~~l~g~~d~s~I~~~p~~---R~~V~t~v~~~~---~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~-p~~~ 688 (926)
T TIGR00580 616 MSMSGIRDLSIIATPPED---RLPVRTFVMEYD---PELVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELV-PEAR 688 (926)
T ss_pred HHHhcCCCcEEEecCCCC---ccceEEEEEecC---HHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhC-CCCe
Confidence 555555555544322211 011222221111 11111112221 246789999999999999999999752 2478
Q ss_pred EEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCC-ChhHHHHHhhhcccCCCCceEEEEec
Q 013826 317 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAGRTARAGQLGRCFTLLH 395 (436)
Q Consensus 317 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~~~~g~~~~~~~ 395 (436)
+..+||.|+..+|..++++|++|+.+|||||+++++|+|+|++++||+++.+. +..+|.|++||+||.|+.|.|++++.
T Consensus 689 v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~ 768 (926)
T TIGR00580 689 IAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYP 768 (926)
T ss_pred EEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEEC
Confidence 99999999999999999999999999999999999999999999999998864 57899999999999999999999985
Q ss_pred c------hhHHHHHHHHHH
Q 013826 396 K------DEVKRFKKLLQK 408 (436)
Q Consensus 396 ~------~~~~~~~~~~~~ 408 (436)
. ...++++.+.+.
T Consensus 769 ~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 769 HQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred CcccCCHHHHHHHHHHHHh
Confidence 4 345666655443
No 39
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.2e-40 Score=302.00 Aligned_cols=353 Identities=26% Similarity=0.433 Sum_probs=292.9
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013826 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
||..|++.|..|+..++ .+=+.|+.+..|+|||+++...+++.+.... ..+.++|++||++++.|+-+.+..+++
T Consensus 44 ~f~~ptkiQaaAIP~~~----~kmDliVQaKSGTGKTlVfsv~av~sl~~~~-~~~q~~Iv~PTREiaVQI~~tv~~v~~ 118 (980)
T KOG4284|consen 44 AFALPTKIQAAAIPAIF----SKMDLIVQAKSGTGKTLVFSVLAVESLDSRS-SHIQKVIVTPTREIAVQIKETVRKVAP 118 (980)
T ss_pred cccCCCchhhhhhhhhh----cccceEEEecCCCCceEEEEeeeehhcCccc-CcceeEEEecchhhhhHHHHHHHHhcc
Confidence 68899999977766554 4779999999999999998888887775542 456799999999999999999999997
Q ss_pred hh-CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013826 82 AV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 82 ~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
.+ |.....+.|++....+...+ ..++|+|+||+++..+++... ++.++++++|+||
T Consensus 119 sf~g~~csvfIGGT~~~~d~~rl----------------------k~~rIvIGtPGRi~qL~el~~-~n~s~vrlfVLDE 175 (980)
T KOG4284|consen 119 SFTGARCSVFIGGTAHKLDLIRL----------------------KQTRIVIGTPGRIAQLVELGA-MNMSHVRLFVLDE 175 (980)
T ss_pred cccCcceEEEecCchhhhhhhhh----------------------hhceEEecCchHHHHHHHhcC-CCccceeEEEecc
Confidence 55 88899999998765553221 345899999999999998755 8899999999999
Q ss_pred hhHHhh-HhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhh
Q 013826 161 TDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239 (436)
Q Consensus 161 ~h~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~ 239 (436)
|+.+.+ .+|...+..|+..++. ..|.+.+|||++.......
T Consensus 176 ADkL~~t~sfq~~In~ii~slP~--------------------------------------~rQv~a~SATYp~nLdn~L 217 (980)
T KOG4284|consen 176 ADKLMDTESFQDDINIIINSLPQ--------------------------------------IRQVAAFSATYPRNLDNLL 217 (980)
T ss_pred HHhhhchhhHHHHHHHHHHhcch--------------------------------------hheeeEEeccCchhHHHHH
Confidence 999988 6888888888877644 2368999999999999999
Q ss_pred ccccCCceeeecCCccccCCccccceeeeccC-------cCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcc
Q 013826 240 QLDLHHPLFLTTGETRYKLPERLESYKLICES-------KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 312 (436)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~ 312 (436)
..++.+|.++....+...+....+.+...... ..|...|..++.+.+...+||||+....|+-++.+|+..|
T Consensus 218 sk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG- 296 (980)
T KOG4284|consen 218 SKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSG- 296 (980)
T ss_pred HHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccC-
Confidence 99999999887777666665554444443332 2367778888888899999999999999999999999887
Q ss_pred cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEE
Q 013826 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 392 (436)
Q Consensus 313 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~ 392 (436)
+.+.++.|.|+..+|..+++.+++-.++|||+|+..++|||-+.++.||+.|.|.+...|.+|+||+||.|..|.+++
T Consensus 297 --~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT 374 (980)
T KOG4284|consen 297 --LDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVT 374 (980)
T ss_pred --CCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecchhH-HHHH----HHHHHhcCCCCCCCCCChhh
Q 013826 393 LLHKDEV-KRFK----KLLQKADNDSCPIHSIPSSL 423 (436)
Q Consensus 393 ~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~ 423 (436)
|+.+... +.+. ++...-..--.|.+++|-++
T Consensus 375 ~~~~~~e~~~f~~m~~ria~~~~~~~~p~~p~P~~~ 410 (980)
T KOG4284|consen 375 LLEDERELKGFTAMAYRIAVTVKRVVEPVHPLPGDL 410 (980)
T ss_pred EeccchhhhhhHHHHHHHhhhheeeeccCCCCCccc
Confidence 9876543 3333 33333333334556666554
No 40
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-40 Score=316.97 Aligned_cols=366 Identities=30% Similarity=0.466 Sum_probs=308.0
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh----cCCccEEEEcCCHHHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA----VRCLRALVVLPTRDLALQVKDVF 76 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~~lil~P~~~l~~q~~~~~ 76 (436)
|||..++|.|.+|+..++ .|.++|..|-||||||+++++|++....... ..+|.++|++||+.|+.|+.+++
T Consensus 383 l~y~k~~~IQ~qAiP~Im----sGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~ 458 (997)
T KOG0334|consen 383 LGYEKPTPIQAQAIPAIM----SGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREV 458 (997)
T ss_pred hcCCCCcchhhhhcchhc----cCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHH
Confidence 689999999988877666 4999999999999999999999886654432 25789999999999999999999
Q ss_pred HHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCC--cccCCcc
Q 013826 77 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG--FTLEHLC 154 (436)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~--~~~~~~~ 154 (436)
++++...++.+.+..|+.....++.. +.+++.|+||||++....+..+.. .++....
T Consensus 459 ~kf~k~l~ir~v~vygg~~~~~qiae---------------------lkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 459 RKFLKLLGIRVVCVYGGSGISQQIAE---------------------LKRGAEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred HHHHhhcCceEEEecCCccHHHHHHH---------------------HhcCCceEEeccchhhhhHhhcCCccccccccc
Confidence 99999999999999999988777654 445579999999999998876543 3455666
Q ss_pred EEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccC
Q 013826 155 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234 (436)
Q Consensus 155 ~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~ 234 (436)
++|+||++.+.+.+|...+..|++.++ +..|++++|||.+..
T Consensus 518 ~lv~deaDrmfdmgfePq~~~Ii~nlr--------------------------------------pdrQtvlfSatfpr~ 559 (997)
T KOG0334|consen 518 YLVLDEADRMFDMGFEPQITRILQNLR--------------------------------------PDRQTVLFSATFPRS 559 (997)
T ss_pred eeeechhhhhheeccCcccchHHhhcc--------------------------------------hhhhhhhhhhhhhHH
Confidence 999999999988888777766766652 345789999999998
Q ss_pred chhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhc-CCCcEEEEcCCchhHHHHHHHHhhhccc
Q 013826 235 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGEL 313 (436)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~lvf~~~~~~~~~~~~~l~~~~~~ 313 (436)
+..+....++.|..+..........+..+.+.+......|...|.+++... ..+++||||.+.+.|..+.+.|.+.+
T Consensus 560 m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag-- 637 (997)
T KOG0334|consen 560 MEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAG-- 637 (997)
T ss_pred HHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcC--
Confidence 888888888888877666666555555556666666888888888888654 57899999999999999999999777
Q ss_pred ceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEE
Q 013826 314 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393 (436)
Q Consensus 314 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 393 (436)
+.+..+||+-+..+|+..++.|++|.+.+||+|+.+..|+|++.+..||+|+.|....+|++|.||+||.|++|.+++|
T Consensus 638 -~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtF 716 (997)
T KOG0334|consen 638 -YNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTF 716 (997)
T ss_pred -cchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEE
Confidence 8888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecchhHHHHHHHHHHhcCCCCCCCCCChhhhhhhhhccc
Q 013826 394 LHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 432 (436)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (436)
+.+.+......+.+.++..+++....-..+.+.+..+-+
T Consensus 717 i~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~~f~~~~~ 755 (997)
T KOG0334|consen 717 ITPDQLKYAGDLCKALELSKQPVPKLLQALSERFKAKQK 755 (997)
T ss_pred eChHHhhhHHHHHHHHHhccCCCchHHHHHHHHHHhhhh
Confidence 999888888888888877776665544445554444433
No 41
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.5e-39 Score=313.36 Aligned_cols=359 Identities=19% Similarity=0.257 Sum_probs=258.8
Q ss_pred CCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh----cCCccEEEEcCCHHHHHHHHHHHHH
Q 013826 3 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA----VRCLRALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 3 ~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~~lil~P~~~l~~q~~~~~~~ 78 (436)
|.+|+|.|.+|+..+.+ |+|+++.||||||||.++++|++..+...+ ..+..+||++|.++|..++.+.+..
T Consensus 20 ~~~~t~~Q~~a~~~i~~----G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~ 95 (814)
T COG1201 20 FTSLTPPQRYAIPEIHS----GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEE 95 (814)
T ss_pred cCCCCHHHHHHHHHHhC----CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 67899999999988774 999999999999999999999999988762 2446899999999999999999999
Q ss_pred hhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCC-cccCCccEEE
Q 013826 79 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLV 157 (436)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~-~~~~~~~~iI 157 (436)
++...|+.+.+-+|+++......+ ..+.|+|+++||++|.-++..... -.+++++++|
T Consensus 96 ~~~~~G~~v~vRhGDT~~~er~r~---------------------~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VI 154 (814)
T COG1201 96 PLRELGIEVAVRHGDTPQSEKQKM---------------------LKNPPHILITTPESLAILLNSPKFRELLRDVRYVI 154 (814)
T ss_pred HHHHcCCccceecCCCChHHhhhc---------------------cCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEE
Confidence 999999999999999987666433 334569999999999888765321 2588999999
Q ss_pred EehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchh
Q 013826 158 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237 (436)
Q Consensus 158 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 237 (436)
|||.|.+....-+.++...+.++.... ..+|.+.+|||..+....
T Consensus 155 VDEiHel~~sKRG~~Lsl~LeRL~~l~-----------------------------------~~~qRIGLSATV~~~~~v 199 (814)
T COG1201 155 VDEIHALAESKRGVQLALSLERLRELA-----------------------------------GDFQRIGLSATVGPPEEV 199 (814)
T ss_pred eehhhhhhccccchhhhhhHHHHHhhC-----------------------------------cccEEEeehhccCCHHHH
Confidence 999999876644444443333332211 135789999999754333
Q ss_pred hhccccCC-c-eeeecCCccccCCcccc-cee--e-eccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhc
Q 013826 238 LAQLDLHH-P-LFLTTGETRYKLPERLE-SYK--L-ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG 311 (436)
Q Consensus 238 ~~~~~~~~-~-~~~~~~~~~~~~~~~~~-~~~--~-~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~ 311 (436)
.......+ + .++.........-.... ... . ..........+.++++++ ..+|||+||+..++.++..|++..
T Consensus 200 arfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~ 277 (814)
T COG1201 200 AKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLG 277 (814)
T ss_pred HHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhc
Confidence 32222222 2 22222221110000000 000 0 000111333445555553 389999999999999999999875
Q ss_pred ccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCC-CceE
Q 013826 312 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ-LGRC 390 (436)
Q Consensus 312 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~-~g~~ 390 (436)
. ..+..+||+++.+.|..+.++|++|+.+.+|||+.++-|||+.+++.||++++|.++..++||+||+|+... ..+.
T Consensus 278 ~--~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg 355 (814)
T COG1201 278 P--DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKG 355 (814)
T ss_pred C--CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccE
Confidence 3 678899999999999999999999999999999999999999999999999999999999999999999543 3667
Q ss_pred EEEecch-hHHHHHHHHHHhcCCCCCCCCCChhhhh
Q 013826 391 FTLLHKD-EVKRFKKLLQKADNDSCPIHSIPSSLIE 425 (436)
Q Consensus 391 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (436)
+++..+. |.-.-..+.+......+.-.+++..-+.
T Consensus 356 ~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LD 391 (814)
T COG1201 356 IIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLD 391 (814)
T ss_pred EEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchh
Confidence 7776653 3222223333343444443444443333
No 42
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=9.6e-39 Score=283.92 Aligned_cols=323 Identities=21% Similarity=0.288 Sum_probs=230.7
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh
Q 013826 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 83 (436)
-++|.||......++. +|+++++|||-|||+++++.+...+... ++ ++|+++||+.|+.|.++.+..+..-.
T Consensus 14 ie~R~YQ~~i~a~al~-----~NtLvvlPTGLGKT~IA~~V~~~~l~~~--~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip 85 (542)
T COG1111 14 IEPRLYQLNIAAKALF-----KNTLVVLPTGLGKTFIAAMVIANRLRWF--GG-KVLFLAPTKPLVLQHAEFCRKVTGIP 85 (542)
T ss_pred ccHHHHHHHHHHHHhh-----cCeEEEecCCccHHHHHHHHHHHHHHhc--CC-eEEEecCCchHHHHHHHHHHHHhCCC
Confidence 4688999888887764 6999999999999999999999888774 33 89999999999999999999987544
Q ss_pred CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhH
Q 013826 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 163 (436)
Q Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~ 163 (436)
.-.+..++|........ ..+...+|+|+||+.+.+-+..+. .++.++.++||||||+
T Consensus 86 ~~~i~~ltGev~p~~R~----------------------~~w~~~kVfvaTPQvveNDl~~Gr-id~~dv~~lifDEAHR 142 (542)
T COG1111 86 EDEIAALTGEVRPEERE----------------------ELWAKKKVFVATPQVVENDLKAGR-IDLDDVSLLIFDEAHR 142 (542)
T ss_pred hhheeeecCCCChHHHH----------------------HHHhhCCEEEeccHHHHhHHhcCc-cChHHceEEEechhhh
Confidence 45788899988765542 334456999999999999988755 7899999999999999
Q ss_pred HhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc---
Q 013826 164 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ--- 240 (436)
Q Consensus 164 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~--- 240 (436)
......+..+...+-...+ .+..+.+||||-.+...+..
T Consensus 143 AvGnyAYv~Va~~y~~~~k--------------------------------------~~~ilgLTASPGs~~ekI~eV~~ 184 (542)
T COG1111 143 AVGNYAYVFVAKEYLRSAK--------------------------------------NPLILGLTASPGSDLEKIQEVVE 184 (542)
T ss_pred ccCcchHHHHHHHHHHhcc--------------------------------------CceEEEEecCCCCCHHHHHHHHH
Confidence 8666444444332222211 12345666666544211111
Q ss_pred -cccCCcee---------------------------------------------------eecCCc--c-----------
Q 013826 241 -LDLHHPLF---------------------------------------------------LTTGET--R----------- 255 (436)
Q Consensus 241 -~~~~~~~~---------------------------------------------------~~~~~~--~----------- 255 (436)
+++.+..+ ...... .
T Consensus 185 nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~ 264 (542)
T COG1111 185 NLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRL 264 (542)
T ss_pred hCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHH
Confidence 00000000 000000 0
Q ss_pred -ccCCccccce-----------------------------------------------------------------eeec
Q 013826 256 -YKLPERLESY-----------------------------------------------------------------KLIC 269 (436)
Q Consensus 256 -~~~~~~~~~~-----------------------------------------------------------------~~~~ 269 (436)
.........+ ....
T Consensus 265 ~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~ 344 (542)
T COG1111 265 IMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESG 344 (542)
T ss_pred HhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhcccc
Confidence 0000000000 0011
Q ss_pred cCcCcHHHHHHHHH----hcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEe-------ccccchHHHHHHHHHHhc
Q 013826 270 ESKLKPLYLVALLQ----SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY-------SGLQRQSVRSKTLKAFRE 338 (436)
Q Consensus 270 ~~~~~~~~l~~~l~----~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~r~~~~~~f~~ 338 (436)
....|.+.+.++++ +.++.+++||++.++.|+.+.++|.+.+.... +..+ ..+|++.+..++++.|++
T Consensus 345 v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~ 423 (542)
T COG1111 345 VEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR-VRFIGQASREGDKGMSQKEQKEIIDQFRK 423 (542)
T ss_pred CCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce-eEEeeccccccccccCHHHHHHHHHHHhc
Confidence 12334444444443 33567999999999999999999998873322 1222 257999999999999999
Q ss_pred CCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecch
Q 013826 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 397 (436)
Q Consensus 339 g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 397 (436)
|+++|||+|++.++|+|+|.++.||+|++..|+..++||.||+||. ++|++++++...
T Consensus 424 Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 424 GEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred CCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 9999999999999999999999999999999999999999999996 689999999876
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.6e-39 Score=324.35 Aligned_cols=323 Identities=22% Similarity=0.265 Sum_probs=231.1
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+|+++|+|+|.+++...+ ..++++++++|||+|||.++.++++..+.. .+.++||++|+++|+.|+++.+..+.
T Consensus 19 ~g~~~l~~~Q~~ai~~~~---~~g~nvlv~apTGsGKT~~~~l~il~~l~~---~~~~~l~l~P~~aLa~q~~~~~~~~~ 92 (720)
T PRK00254 19 RGIEELYPPQAEALKSGV---LEGKNLVLAIPTASGKTLVAEIVMVNKLLR---EGGKAVYLVPLKALAEEKYREFKDWE 92 (720)
T ss_pred CCCCCCCHHHHHHHHHHH---hCCCcEEEECCCCcHHHHHHHHHHHHHHHh---cCCeEEEEeChHHHHHHHHHHHHHHh
Confidence 589999999999987643 358999999999999999999998887654 34589999999999999999998753
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013826 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
..|+.+..++|+....... ..+++|+|+||+++..++.... .++++++++|+||
T Consensus 93 -~~g~~v~~~~Gd~~~~~~~------------------------~~~~~IiV~Tpe~~~~ll~~~~-~~l~~l~lvViDE 146 (720)
T PRK00254 93 -KLGLRVAMTTGDYDSTDEW------------------------LGKYDIIIATAEKFDSLLRHGS-SWIKDVKLVVADE 146 (720)
T ss_pred -hcCCEEEEEeCCCCCchhh------------------------hccCCEEEEcHHHHHHHHhCCc-hhhhcCCEEEEcC
Confidence 4588999999887533211 1346999999999988877543 4588999999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc
Q 013826 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 240 (436)
+|.+.+......++.++..+.. ..+.+++|||+.+. ..+..
T Consensus 147 ~H~l~~~~rg~~le~il~~l~~--------------------------------------~~qiI~lSATl~n~-~~la~ 187 (720)
T PRK00254 147 IHLIGSYDRGATLEMILTHMLG--------------------------------------RAQILGLSATVGNA-EELAE 187 (720)
T ss_pred cCccCCccchHHHHHHHHhcCc--------------------------------------CCcEEEEEccCCCH-HHHHH
Confidence 9999877777777777765421 23689999999653 22222
Q ss_pred cccCCceeeecCCccccCCcc-ccceeeeccC-------cCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhc-
Q 013826 241 LDLHHPLFLTTGETRYKLPER-LESYKLICES-------KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG- 311 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~- 311 (436)
++....... ..+....... .......... ......+.+.+. .++++||||++++.|+.++..+....
T Consensus 188 -wl~~~~~~~-~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~ 263 (720)
T PRK00254 188 -WLNAELVVS-DWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIK 263 (720)
T ss_pred -HhCCccccC-CCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHH
Confidence 111111100 0000000000 0000000000 011122333333 36789999999999998887764310
Q ss_pred -----------------------------ccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeE
Q 013826 312 -----------------------------ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362 (436)
Q Consensus 312 -----------------------------~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~v 362 (436)
....+++.+|+++++.+|..+.+.|++|.++|||||+++++|+|+|..++|
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vV 343 (720)
T PRK00254 264 RFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVI 343 (720)
T ss_pred HhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEE
Confidence 012369999999999999999999999999999999999999999999988
Q ss_pred EE-------ecC-CCChhHHHHHhhhcccCC--CCceEEEEecchh
Q 013826 363 VN-------YDK-PAYIKTYIHRAGRTARAG--QLGRCFTLLHKDE 398 (436)
Q Consensus 363 i~-------~~~-~~s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~~ 398 (436)
|. ++. +.+..+|.||+||+||.| ..|.+++++...+
T Consensus 344 I~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 344 IRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred ECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 84 222 224779999999999976 3499999987654
No 44
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.2e-39 Score=316.33 Aligned_cols=319 Identities=17% Similarity=0.229 Sum_probs=228.9
Q ss_pred CCCCcccchhHHHHHhhhCCCCCC--CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~--~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 78 (436)
++| +|++.|.+++..+...+... .+.++++|||||||.+++++++..+.. +.+++|++||++|+.|+++.+..
T Consensus 232 lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~----g~qvlilaPT~~LA~Q~~~~~~~ 306 (630)
T TIGR00643 232 LPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA----GYQVALMAPTEILAEQHYNSLRN 306 (630)
T ss_pred CCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc----CCcEEEECCHHHHHHHHHHHHHH
Confidence 467 69999999999998765333 368999999999999999888877654 45899999999999999999999
Q ss_pred hhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhh-ccCCcEEEeCchhHHHHhhcCCCcccCCccEEE
Q 013826 79 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRGFTLEHLCYLV 157 (436)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iI 157 (436)
++...|+.+..++|+.+...... .+..+ ..+++|+|+||..+.. ...+.+++++|
T Consensus 307 l~~~~gi~v~lltg~~~~~~r~~------------------~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvV 362 (630)
T TIGR00643 307 LLAPLGIEVALLTGSLKGKRRKE------------------LLETIASGQIHLVVGTHALIQE------KVEFKRLALVI 362 (630)
T ss_pred HhcccCcEEEEEecCCCHHHHHH------------------HHHHHhCCCCCEEEecHHHHhc------cccccccceEE
Confidence 99888999999999987655421 22222 2357999999987643 24578899999
Q ss_pred EehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchh
Q 013826 158 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237 (436)
Q Consensus 158 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 237 (436)
+||+|++...... .+....... ...+.+++|||+.+....
T Consensus 363 IDEaH~fg~~qr~----~l~~~~~~~------------------------------------~~~~~l~~SATp~prtl~ 402 (630)
T TIGR00643 363 IDEQHRFGVEQRK----KLREKGQGG------------------------------------FTPHVLVMSATPIPRTLA 402 (630)
T ss_pred EechhhccHHHHH----HHHHhcccC------------------------------------CCCCEEEEeCCCCcHHHH
Confidence 9999987432211 111111000 123679999998664433
Q ss_pred hhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHh--cCCCcEEEEcCCch--------hHHHHHHHH
Q 013826 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVE--------STHRLCTLL 307 (436)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~~~~--------~~~~~~~~l 307 (436)
.......+......... ....+.... .....+ ..+...+.. ..+.+++|||+.++ .++.+++.|
T Consensus 403 l~~~~~l~~~~i~~~p~---~r~~i~~~~--~~~~~~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L 476 (630)
T TIGR00643 403 LTVYGDLDTSIIDELPP---GRKPITTVL--IKHDEK-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERL 476 (630)
T ss_pred HHhcCCcceeeeccCCC---CCCceEEEE--eCcchH-HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHH
Confidence 22221111111110000 001111111 111222 333433332 24678999999864 456777777
Q ss_pred hhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCC-ChhHHHHHhhhcccCCC
Q 013826 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAGRTARAGQ 386 (436)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~~~ 386 (436)
.+.. .+..+..+||+|+..+|.+++++|++|+.+|||||+++++|+|+|++++||+++.+. +...+.|++||+||.|.
T Consensus 477 ~~~~-~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~ 555 (630)
T TIGR00643 477 KKAF-PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDH 555 (630)
T ss_pred HhhC-CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCC
Confidence 7542 457899999999999999999999999999999999999999999999999999886 68899999999999999
Q ss_pred CceEEEEec
Q 013826 387 LGRCFTLLH 395 (436)
Q Consensus 387 ~g~~~~~~~ 395 (436)
.|.|++++.
T Consensus 556 ~g~~il~~~ 564 (630)
T TIGR00643 556 QSYCLLVYK 564 (630)
T ss_pred CcEEEEEEC
Confidence 999999983
No 45
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.3e-39 Score=301.23 Aligned_cols=330 Identities=22% Similarity=0.331 Sum_probs=255.3
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
||+..+|+.|.++++.+++ ++++++.+|||+|||+.|.+|++-. .+-+|||+|..+|...+.+.++..
T Consensus 13 fGy~~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlCyQiPAll~-------~G~TLVVSPLiSLM~DQV~~l~~~- 80 (590)
T COG0514 13 FGYASFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLCYQIPALLL-------EGLTLVVSPLISLMKDQVDQLEAA- 80 (590)
T ss_pred hCccccCCCHHHHHHHHHc----CCcEEEEccCCCCcchHhhhHHHhc-------CCCEEEECchHHHHHHHHHHHHHc-
Confidence 7999999999988888775 7999999999999999999998832 236999999999999888888877
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhcc-CCcEEEeCchhHHHHhhcCCCcccCCccEEEEe
Q 013826 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVD 159 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiD 159 (436)
|+.+..+.+..+..+. ..++..+.. ..++++-+|++|..-..... +.--.+.+++||
T Consensus 81 ---Gi~A~~lnS~l~~~e~------------------~~v~~~l~~g~~klLyisPErl~~~~f~~~-L~~~~i~l~vID 138 (590)
T COG0514 81 ---GIRAAYLNSTLSREER------------------QQVLNQLKSGQLKLLYISPERLMSPRFLEL-LKRLPISLVAID 138 (590)
T ss_pred ---CceeehhhcccCHHHH------------------HHHHHHHhcCceeEEEECchhhcChHHHHH-HHhCCCceEEec
Confidence 7888888888766555 233333333 47999999999855322211 224468899999
Q ss_pred hhhHHhhHh--HhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchh
Q 013826 160 ETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237 (436)
Q Consensus 160 E~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 237 (436)
|||++..++ |+.....+-..... ++..+.+.+|||.++....
T Consensus 139 EAHCiSqWGhdFRP~Y~~lg~l~~~------------------------------------~~~~p~~AlTATA~~~v~~ 182 (590)
T COG0514 139 EAHCISQWGHDFRPDYRRLGRLRAG------------------------------------LPNPPVLALTATATPRVRD 182 (590)
T ss_pred hHHHHhhcCCccCHhHHHHHHHHhh------------------------------------CCCCCEEEEeCCCChHHHH
Confidence 999998775 55555444443322 1334678999988876544
Q ss_pred --hhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHH---hcCCCcEEEEcCCchhHHHHHHHHhhhcc
Q 013826 238 --LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ---SLGEEKCIVFTSSVESTHRLCTLLNHFGE 312 (436)
Q Consensus 238 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~~lvf~~~~~~~~~~~~~l~~~~~ 312 (436)
.....+..+..+..+..+.++.-.+ ........... .+. ....+.+||||.|++.++.+++.|.+.+
T Consensus 183 DI~~~L~l~~~~~~~~sfdRpNi~~~v-----~~~~~~~~q~~--fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g- 254 (590)
T COG0514 183 DIREQLGLQDANIFRGSFDRPNLALKV-----VEKGEPSDQLA--FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNG- 254 (590)
T ss_pred HHHHHhcCCCcceEEecCCCchhhhhh-----hhcccHHHHHH--HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCC-
Confidence 3335555665665555544332221 11111122222 232 4456679999999999999999999876
Q ss_pred cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEE
Q 013826 313 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 392 (436)
Q Consensus 313 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~ 392 (436)
+.+..||++|+..+|....++|..++.+|+|||.+++.|||-|+++.||+++.|.|+.+|.|-+||+||.|.+..|++
T Consensus 255 --~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~ail 332 (590)
T COG0514 255 --ISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAIL 332 (590)
T ss_pred --CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecchhHHHHHHHHHHhc
Q 013826 393 LLHKDEVKRFKKLLQKAD 410 (436)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~ 410 (436)
++++.|......+++...
T Consensus 333 l~~~~D~~~~~~~i~~~~ 350 (590)
T COG0514 333 LYSPEDIRWQRYLIEQSK 350 (590)
T ss_pred eeccccHHHHHHHHHhhc
Confidence 999999877777766643
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1e-38 Score=314.65 Aligned_cols=317 Identities=17% Similarity=0.212 Sum_probs=230.3
Q ss_pred CCCCcccchhHHHHHhhhCCCCCC--CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~--~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 78 (436)
++| +|+++|.+++..+...+..+ .+.++++|||||||.+++++++..+.. +.+++|++||++|+.|+++.+..
T Consensus 258 l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~----g~q~lilaPT~~LA~Q~~~~l~~ 332 (681)
T PRK10917 258 LPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA----GYQAALMAPTEILAEQHYENLKK 332 (681)
T ss_pred CCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEeccHHHHHHHHHHHHH
Confidence 466 59999999999998865443 478999999999999999999887653 45899999999999999999999
Q ss_pred hhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhc-cCCcEEEeCchhHHHHhhcCCCcccCCccEEE
Q 013826 79 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLV 157 (436)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iI 157 (436)
++...|+.+..++|+.+...+. +.+..+. ..++|+|+||+.+.. ...+++++++|
T Consensus 333 l~~~~~i~v~ll~G~~~~~~r~------------------~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvV 388 (681)
T PRK10917 333 LLEPLGIRVALLTGSLKGKERR------------------EILEAIASGEADIVIGTHALIQD------DVEFHNLGLVI 388 (681)
T ss_pred HHhhcCcEEEEEcCCCCHHHHH------------------HHHHHHhCCCCCEEEchHHHhcc------cchhcccceEE
Confidence 9988899999999998765542 2222233 347999999977632 24578899999
Q ss_pred EehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchh
Q 013826 158 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237 (436)
Q Consensus 158 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 237 (436)
+||+|++...... .+.... ...+.+++|||+.+....
T Consensus 389 IDE~Hrfg~~qr~----~l~~~~---------------------------------------~~~~iL~~SATp~prtl~ 425 (681)
T PRK10917 389 IDEQHRFGVEQRL----ALREKG---------------------------------------ENPHVLVMTATPIPRTLA 425 (681)
T ss_pred EechhhhhHHHHH----HHHhcC---------------------------------------CCCCEEEEeCCCCHHHHH
Confidence 9999987433211 111100 123579999998665443
Q ss_pred hhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHh--cCCCcEEEEcCCch--------hHHHHHHHH
Q 013826 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVE--------STHRLCTLL 307 (436)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~~~~--------~~~~~~~~l 307 (436)
.......+...+..... ....+.... .. ......+.+.+.. ..+.+++|||+.++ .++.+++.|
T Consensus 426 ~~~~g~~~~s~i~~~p~---~r~~i~~~~--~~-~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L 499 (681)
T PRK10917 426 MTAYGDLDVSVIDELPP---GRKPITTVV--IP-DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEEL 499 (681)
T ss_pred HHHcCCCceEEEecCCC---CCCCcEEEE--eC-cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHH
Confidence 33322222222211110 011111111 11 1222223333322 24678999999654 455677777
Q ss_pred hhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCC-ChhHHHHHhhhcccCCC
Q 013826 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAGRTARAGQ 386 (436)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~~~ 386 (436)
.+.. .+..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.+. +...+.|++||+||.|.
T Consensus 500 ~~~~-~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~ 578 (681)
T PRK10917 500 QEAF-PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAA 578 (681)
T ss_pred HHHC-CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCC
Confidence 7652 237899999999999999999999999999999999999999999999999999886 57889999999999999
Q ss_pred CceEEEEecc
Q 013826 387 LGRCFTLLHK 396 (436)
Q Consensus 387 ~g~~~~~~~~ 396 (436)
.|.|++++..
T Consensus 579 ~g~~ill~~~ 588 (681)
T PRK10917 579 QSYCVLLYKD 588 (681)
T ss_pred ceEEEEEECC
Confidence 9999999953
No 47
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-39 Score=280.07 Aligned_cols=351 Identities=26% Similarity=0.460 Sum_probs=299.0
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||++|+..|++|+. +...|.+++..+.+|+|||.+...+++..+... .....+++++|+++|+.|..+....++
T Consensus 44 yGFekPSaIQqraI~----p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~-~ke~qalilaPtreLa~qi~~v~~~lg 118 (397)
T KOG0327|consen 44 YGFEKPSAIQQRAIL----PCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS-VKETQALILAPTRELAQQIQKVVRALG 118 (397)
T ss_pred hccCCchHHHhcccc----ccccCCceeEeeeccccchhhhHHHHHhhcCcc-hHHHHHHHhcchHHHHHHHHHHHHhhh
Confidence 599999999976654 555699999999999999999888888876433 234479999999999999999999998
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013826 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
...+.++....|+.....+... .....+.|+++||+.....+.+. .+....+.+.|+||
T Consensus 119 ~~~~~~v~~~igg~~~~~~~~~--------------------i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDE 177 (397)
T KOG0327|consen 119 DHMDVSVHACIGGTNVRREDQA--------------------LLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDE 177 (397)
T ss_pred cccceeeeeecCcccchhhhhh--------------------hhccCceeecCCchhHHHhhccc-cccccceeEEeecc
Confidence 8888888888887765533221 22334699999999999999886 47777899999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc
Q 013826 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 240 (436)
++.+++.+|.+.+..+++++.. ..|.+++|||.+........
T Consensus 178 aDEmLs~gfkdqI~~if~~lp~--------------------------------------~vQv~l~SAT~p~~vl~vt~ 219 (397)
T KOG0327|consen 178 ADEMLSRGFKDQIYDIFQELPS--------------------------------------DVQVVLLSATMPSDVLEVTK 219 (397)
T ss_pred hHhhhccchHHHHHHHHHHcCc--------------------------------------chhheeecccCcHHHHHHHH
Confidence 9999999999999999998854 34789999999999999999
Q ss_pred cccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEe
Q 013826 241 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 320 (436)
.++.+|..+......... ..+..+......+.|.+.+..+.+ .-...++||++++.+..+...|..++ ..+..+
T Consensus 220 ~f~~~pv~i~vkk~~ltl-~gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~---~~~s~~ 293 (397)
T KOG0327|consen 220 KFMREPVRILVKKDELTL-EGIKQFYINVEKEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHG---FTVSAI 293 (397)
T ss_pred HhccCceEEEecchhhhh-hheeeeeeeccccccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCC---ceEEEe
Confidence 999999988777666443 334445555555558888888887 56789999999999999999998777 899999
Q ss_pred ccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhHH
Q 013826 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400 (436)
Q Consensus 321 ~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 400 (436)
|+.|...+|+.+++.|++|..+|||+|..+++|+|+..+..|++|+.|.....|.+|+||+||.|.+|.++.++...+..
T Consensus 294 ~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~ 373 (397)
T KOG0327|consen 294 HGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVR 373 (397)
T ss_pred ecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCChhhh
Q 013826 401 RFKKLLQKADNDSCPIHSIPSSLI 424 (436)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~ 424 (436)
.++++.+.+. .++..+|....
T Consensus 374 ~lk~ie~~y~---~~i~e~p~~~~ 394 (397)
T KOG0327|consen 374 DLKDIEKFYN---TPIEELPSNFA 394 (397)
T ss_pred HHHhHHHhcC---Ccceecccchh
Confidence 9999987774 45566655443
No 48
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.2e-40 Score=285.00 Aligned_cols=339 Identities=29% Similarity=0.471 Sum_probs=278.2
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHh-------hcCCccEEEEcCCHHHHHHHHH
Q 013826 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-------AVRCLRALVVLPTRDLALQVKD 74 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~-------~~~~~~~lil~P~~~l~~q~~~ 74 (436)
|+.+|+|.|.+.+..++ .|++.|-.|-||||||+++.+|++-..... ...++--||+||+++|+.|+.+
T Consensus 189 GI~~PTpIQvQGlPvvL----sGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~ 264 (610)
T KOG0341|consen 189 GIVHPTPIQVQGLPVVL----SGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHD 264 (610)
T ss_pred CCCCCCceeecCcceEe----ecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHH
Confidence 78899999988766554 599999999999999999888866444332 1367789999999999999999
Q ss_pred HHHHhhhhh------CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCc
Q 013826 75 VFAAIAPAV------GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 148 (436)
Q Consensus 75 ~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~ 148 (436)
-+..++... .++.....|+.+...+. .....+.+|+|+||++|.+++.... .
T Consensus 265 iie~~~~~L~e~g~P~lRs~LciGG~~v~eql---------------------~~v~~GvHivVATPGRL~DmL~KK~-~ 322 (610)
T KOG0341|consen 265 IIEQYVAALQEAGYPELRSLLCIGGVPVREQL---------------------DVVRRGVHIVVATPGRLMDMLAKKI-M 322 (610)
T ss_pred HHHHHHHHHHhcCChhhhhhhhhcCccHHHHH---------------------HHHhcCeeEEEcCcchHHHHHHHhh-c
Confidence 888776544 24456666777665553 3455677999999999999998743 6
Q ss_pred ccCCccEEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeec
Q 013826 149 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 228 (436)
Q Consensus 149 ~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s 228 (436)
+++-.+++.+|||+++.+.+|.+-+..++..+... .|++++|
T Consensus 323 sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~Q--------------------------------------RQTLLFS 364 (610)
T KOG0341|consen 323 SLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQ--------------------------------------RQTLLFS 364 (610)
T ss_pred cHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhh--------------------------------------hheeeee
Confidence 78888999999999999999999999999887653 3679999
Q ss_pred cccccCchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHh
Q 013826 229 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 308 (436)
Q Consensus 229 at~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~ 308 (436)
||++..+..++.--+..|..++.+.-....-..++. ......+.|..++.+.+++. ..++||||........+.+||-
T Consensus 365 ATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQe-vEyVkqEaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLL 442 (610)
T KOG0341|consen 365 ATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQE-VEYVKQEAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLL 442 (610)
T ss_pred ccccHHHHHHHHhhcccceEEecccccccchhHHHH-HHHHHhhhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHH
Confidence 999999999999888899888766544333222222 22234567888888888775 4589999999999999999997
Q ss_pred hhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCc
Q 013826 309 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388 (436)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g 388 (436)
=.| ..+..+||+-+.++|...+++|+.|+.+|||+|++.+.|+|+|++.+||+|+.|..+..|++|+||.||.|+.|
T Consensus 443 lKG---VEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~G 519 (610)
T KOG0341|consen 443 LKG---VEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTG 519 (610)
T ss_pred Hcc---ceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcc
Confidence 666 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecchhH----HHHHHHHHHh
Q 013826 389 RCFTLLHKDEV----KRFKKLLQKA 409 (436)
Q Consensus 389 ~~~~~~~~~~~----~~~~~~~~~~ 409 (436)
.+.+|+..... ..+++++...
T Consensus 520 iATTfINK~~~esvLlDLK~LL~Ea 544 (610)
T KOG0341|consen 520 IATTFINKNQEESVLLDLKHLLQEA 544 (610)
T ss_pred eeeeeecccchHHHHHHHHHHHHHh
Confidence 99999987543 3355555444
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=7.9e-39 Score=325.94 Aligned_cols=329 Identities=18% Similarity=0.204 Sum_probs=241.0
Q ss_pred CCCCcccchhHHHHHhhhCCCCCC--CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~--~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 78 (436)
|+| .|++.|.+++..+...+... .+.+++++||+|||.+++.++...+. .+.+++|++||+.|+.|+++.+..
T Consensus 597 ~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~----~g~qvlvLvPT~eLA~Q~~~~f~~ 671 (1147)
T PRK10689 597 FPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE----NHKQVAVLVPTTLLAQQHYDNFRD 671 (1147)
T ss_pred CCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH----cCCeEEEEeCcHHHHHHHHHHHHH
Confidence 567 69999999999988755433 68999999999999998877766554 345899999999999999999998
Q ss_pred hhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhc-cCCcEEEeCchhHHHHhhcCCCcccCCccEEE
Q 013826 79 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLV 157 (436)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iI 157 (436)
.+...++.+..+++..+...+. +.+..+. .+++|+|+||+.+ . ..+.+++++++|
T Consensus 672 ~~~~~~v~i~~l~g~~s~~e~~------------------~il~~l~~g~~dIVVgTp~lL----~--~~v~~~~L~lLV 727 (1147)
T PRK10689 672 RFANWPVRIEMLSRFRSAKEQT------------------QILAEAAEGKIDILIGTHKLL----Q--SDVKWKDLGLLI 727 (1147)
T ss_pred hhccCCceEEEEECCCCHHHHH------------------HHHHHHHhCCCCEEEECHHHH----h--CCCCHhhCCEEE
Confidence 8777778888888877655542 2222232 3579999999644 2 234578899999
Q ss_pred EehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchh
Q 013826 158 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237 (436)
Q Consensus 158 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 237 (436)
|||+|++... . .+. ++.+. ...+.+++|||+.+....
T Consensus 728 IDEahrfG~~-~---~e~-lk~l~--------------------------------------~~~qvLl~SATpiprtl~ 764 (1147)
T PRK10689 728 VDEEHRFGVR-H---KER-IKAMR--------------------------------------ADVDILTLTATPIPRTLN 764 (1147)
T ss_pred Eechhhcchh-H---HHH-HHhcC--------------------------------------CCCcEEEEcCCCCHHHHH
Confidence 9999997321 1 111 11111 234789999999877666
Q ss_pred hhccccCCceeeecCCccccCCccccceeeeccC-cCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhccccee
Q 013826 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 316 (436)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~ 316 (436)
....++.++..+...... ...+..+...... ..+...+.++ ..+++++|||++++.++.+++.|++.. .+..
T Consensus 765 l~~~gl~d~~~I~~~p~~---r~~v~~~~~~~~~~~~k~~il~el---~r~gqv~vf~n~i~~ie~la~~L~~~~-p~~~ 837 (1147)
T PRK10689 765 MAMSGMRDLSIIATPPAR---RLAVKTFVREYDSLVVREAILREI---LRGGQVYYLYNDVENIQKAAERLAELV-PEAR 837 (1147)
T ss_pred HHHhhCCCcEEEecCCCC---CCCceEEEEecCcHHHHHHHHHHH---hcCCeEEEEECCHHHHHHHHHHHHHhC-CCCc
Confidence 666666676655432211 0112222211111 1112222222 246789999999999999999998762 2367
Q ss_pred EEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCC-CChhHHHHHhhhcccCCCCceEEEEec
Q 013826 317 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP-AYIKTYIHRAGRTARAGQLGRCFTLLH 395 (436)
Q Consensus 317 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 395 (436)
+..+||+|+..+|.+++.+|++|+.+|||||+++++|+|+|++++||+.+.. .+...|.|++||+||.|+.|.|++++.
T Consensus 838 v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~ 917 (1147)
T PRK10689 838 IAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTP 917 (1147)
T ss_pred EEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeC
Confidence 8899999999999999999999999999999999999999999999977654 467889999999999999999999975
Q ss_pred c------hhHHHHHHHHHH
Q 013826 396 K------DEVKRFKKLLQK 408 (436)
Q Consensus 396 ~------~~~~~~~~~~~~ 408 (436)
. ...++++.+.+.
T Consensus 918 ~~~~~~~~~~~rl~~~~~~ 936 (1147)
T PRK10689 918 HPKAMTTDAQKRLEAIASL 936 (1147)
T ss_pred CCcccCHHHHHHHHHHHHh
Confidence 4 345666666544
No 50
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-39 Score=277.73 Aligned_cols=343 Identities=31% Similarity=0.441 Sum_probs=298.4
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013826 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
||+.|+|.| ++.++-++.++++.-.+-||+|||.++++++++.+......+.++++++||++|+.|+.+..+.++.
T Consensus 40 g~~~ptpiq----RKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgr 115 (529)
T KOG0337|consen 40 GFNTPTPIQ----RKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGR 115 (529)
T ss_pred hcCCCCchh----cccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcc
Confidence 789999999 5556666679999999999999999999999999877654567999999999999999999999999
Q ss_pred hhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehh
Q 013826 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 161 (436)
Q Consensus 82 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~ 161 (436)
+.+....+++|+....++. ..+..+++|+++||+++.++..... +.++.+.+||+||+
T Consensus 116 gt~lr~s~~~ggD~~eeqf---------------------~~l~~npDii~ATpgr~~h~~vem~-l~l~sveyVVfdEa 173 (529)
T KOG0337|consen 116 GTKLRQSLLVGGDSIEEQF---------------------ILLNENPDIIIATPGRLLHLGVEMT-LTLSSVEYVVFDEA 173 (529)
T ss_pred ccchhhhhhcccchHHHHH---------------------HHhccCCCEEEecCceeeeeehhee-ccccceeeeeehhh
Confidence 8888888888887766654 3456678999999999988766533 67999999999999
Q ss_pred hHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhcc
Q 013826 162 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 241 (436)
Q Consensus 162 h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~ 241 (436)
+.+...+|++.+..++..... ..|++++|||++...-.....
T Consensus 174 drlfemgfqeql~e~l~rl~~--------------------------------------~~QTllfSatlp~~lv~faka 215 (529)
T KOG0337|consen 174 DRLFEMGFQEQLHEILSRLPE--------------------------------------SRQTLLFSATLPRDLVDFAKA 215 (529)
T ss_pred hHHHhhhhHHHHHHHHHhCCC--------------------------------------cceEEEEeccCchhhHHHHHc
Confidence 999999999999999987754 127899999999998899999
Q ss_pred ccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcC-CCcEEEEcCCchhHHHHHHHHhhhcccceeEEEe
Q 013826 242 DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 320 (436)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 320 (436)
++.+|..+....+. .+....+..+.......|..+|..++.... +++++||+++..+++.+...|+..+ +.+..+
T Consensus 216 Gl~~p~lVRldvet-kise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g---~~~s~i 291 (529)
T KOG0337|consen 216 GLVPPVLVRLDVET-KISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFG---GEGSDI 291 (529)
T ss_pred cCCCCceEEeehhh-hcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcC---CCcccc
Confidence 99999887744433 344555666777778888888888887653 4679999999999999999999888 888899
Q ss_pred ccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhHH
Q 013826 321 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400 (436)
Q Consensus 321 ~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 400 (436)
.+.+++..|..-+..|..++..+||+|+...+|+|+|.++.||+++.|....-|++|+||+.|.|+.|..|.++...+..
T Consensus 292 ysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~ 371 (529)
T KOG0337|consen 292 YSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDP 371 (529)
T ss_pred ccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHhcCC
Q 013826 401 RFKKLLQKADND 412 (436)
Q Consensus 401 ~~~~~~~~~~~~ 412 (436)
.+-.+...+.+.
T Consensus 372 yl~DL~lflgr~ 383 (529)
T KOG0337|consen 372 YLLDLQLFLGRP 383 (529)
T ss_pred hhhhhhhhcCCc
Confidence 887777666543
No 51
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=5.1e-38 Score=312.38 Aligned_cols=331 Identities=20% Similarity=0.230 Sum_probs=229.0
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013826 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
||+ |+++|.++++.+. .++++++++|||+|||+++.+++++.+.. +.+++|++|+++|+.|+++.+.++.
T Consensus 20 ~~~-l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~~----~~k~v~i~P~raLa~q~~~~~~~l~- 89 (674)
T PRK01172 20 DFE-LYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFLA----GLKSIYIVPLRSLAMEKYEELSRLR- 89 (674)
T ss_pred CCC-CCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHHh----CCcEEEEechHHHHHHHHHHHHHHh-
Confidence 565 9999999988764 58999999999999999999888877654 3479999999999999999998754
Q ss_pred hhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehh
Q 013826 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 161 (436)
Q Consensus 82 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~ 161 (436)
..|..+...+|+....... ...++|+|+||+++..++.+.. ..+.+++++|+||+
T Consensus 90 ~~g~~v~~~~G~~~~~~~~------------------------~~~~dIiv~Tpek~~~l~~~~~-~~l~~v~lvViDEa 144 (674)
T PRK01172 90 SLGMRVKISIGDYDDPPDF------------------------IKRYDVVILTSEKADSLIHHDP-YIINDVGLIVADEI 144 (674)
T ss_pred hcCCeEEEEeCCCCCChhh------------------------hccCCEEEECHHHHHHHHhCCh-hHHhhcCEEEEecc
Confidence 4578888888876432211 1245999999999988887644 45789999999999
Q ss_pred hHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhcc
Q 013826 162 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 241 (436)
Q Consensus 162 h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~ 241 (436)
|.+.+..+...++.+....+... +..+.+++|||+.+.. .+..
T Consensus 145 H~l~d~~rg~~le~ll~~~~~~~-----------------------------------~~~riI~lSATl~n~~-~la~- 187 (674)
T PRK01172 145 HIIGDEDRGPTLETVLSSARYVN-----------------------------------PDARILALSATVSNAN-ELAQ- 187 (674)
T ss_pred hhccCCCccHHHHHHHHHHHhcC-----------------------------------cCCcEEEEeCccCCHH-HHHH-
Confidence 99877766666777665543211 2347899999996532 2221
Q ss_pred ccCCceeeecCCccccCCcccc--ceeeeccCcCcHHHHHHHHHh--cCCCcEEEEcCCchhHHHHHHHHhhhccc----
Q 013826 242 DLHHPLFLTTGETRYKLPERLE--SYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGEL---- 313 (436)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~~~~~~~~~~~~l~~~~~~---- 313 (436)
++....+ ....+..+....+. ..............+..++.. ..++++||||++++.++.++..|.+....
T Consensus 188 wl~~~~~-~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~ 266 (674)
T PRK01172 188 WLNASLI-KSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDF 266 (674)
T ss_pred HhCCCcc-CCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccc
Confidence 1111111 00000000000000 000000011111112233332 24678999999999999999998754210
Q ss_pred ------------------ceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecC--------
Q 013826 314 ------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK-------- 367 (436)
Q Consensus 314 ------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~-------- 367 (436)
..+++.+|++++..+|..+.+.|++|.++|||||+++++|+|+|+.. ||+.+.
T Consensus 267 ~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~ 345 (674)
T PRK01172 267 KVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGI 345 (674)
T ss_pred cccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceE-EEEcCceEeCCCCc
Confidence 13588999999999999999999999999999999999999999865 444332
Q ss_pred -CCChhHHHHHhhhcccCCCC--ceEEEEecchh-HHHHHHHH
Q 013826 368 -PAYIKTYIHRAGRTARAGQL--GRCFTLLHKDE-VKRFKKLL 406 (436)
Q Consensus 368 -~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~-~~~~~~~~ 406 (436)
+.+..+|.||+||+||.|.+ |.+++++...+ ...+++++
T Consensus 346 ~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l 388 (674)
T PRK01172 346 RYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYL 388 (674)
T ss_pred eeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHH
Confidence 45788999999999998854 67887765443 44444444
No 52
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.2e-37 Score=316.92 Aligned_cols=309 Identities=21% Similarity=0.289 Sum_probs=214.6
Q ss_pred EECCCCchHHHHhHHHHHHHHHHhh---------cCCccEEEEcCCHHHHHHHHHHHHHhhh------------hhCceE
Q 013826 29 INSPTGSGKTLSYALPIVQTLSNRA---------VRCLRALVVLPTRDLALQVKDVFAAIAP------------AVGLSV 87 (436)
Q Consensus 29 ~~~~tGsGKT~~~~~~~~~~~~~~~---------~~~~~~lil~P~~~l~~q~~~~~~~~~~------------~~~~~v 87 (436)
|++|||||||+++.+++++.+.... .++.++|||+|+++|+.|+.+.++..+. ..++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999998886532 1356899999999999999998875221 136888
Q ss_pred EEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHHhhH
Q 013826 88 GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 167 (436)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~~~~ 167 (436)
...+|+.+...+.. .+.+.++|+|+||++|..++.+.....++++++|||||+|.+.+.
T Consensus 81 ~vrtGDt~~~eR~r---------------------ll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~ 139 (1490)
T PRK09751 81 GIRTGDTPAQERSK---------------------LTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGS 139 (1490)
T ss_pred EEEECCCCHHHHHH---------------------HhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhccc
Confidence 99999987665532 223456999999999998876533346899999999999999866
Q ss_pred hHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc-cccCCc
Q 013826 168 AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LDLHHP 246 (436)
Q Consensus 168 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~-~~~~~~ 246 (436)
..+.++...+..+....+ ...|.|++|||+.+. ..... .....+
T Consensus 140 kRG~~Lel~LeRL~~l~~----------------------------------~~~QrIgLSATI~n~-eevA~~L~g~~p 184 (1490)
T PRK09751 140 KRGAHLALSLERLDALLH----------------------------------TSAQRIGLSATVRSA-SDVAAFLGGDRP 184 (1490)
T ss_pred ccccHHHHHHHHHHHhCC----------------------------------CCCeEEEEEeeCCCH-HHHHHHhcCCCC
Confidence 545555444444322111 234789999999763 33222 111223
Q ss_pred eeeecCCccccCCccccceeeecc--------------------CcCcHHHHHHHHHh-cCCCcEEEEcCCchhHHHHHH
Q 013826 247 LFLTTGETRYKLPERLESYKLICE--------------------SKLKPLYLVALLQS-LGEEKCIVFTSSVESTHRLCT 305 (436)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~l~~~l~~-~~~~~~lvf~~~~~~~~~~~~ 305 (436)
..+......... .+........ ..........++.. ....++||||||+..|+.++.
T Consensus 185 v~Iv~~~~~r~~--~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~ 262 (1490)
T PRK09751 185 VTVVNPPAMRHP--QIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTA 262 (1490)
T ss_pred EEEECCCCCccc--ceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHH
Confidence 322111111111 1110000000 00001111222322 235789999999999999999
Q ss_pred HHhhhccc------------------------------ceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccC
Q 013826 306 LLNHFGEL------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 355 (436)
Q Consensus 306 ~l~~~~~~------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gid 355 (436)
.|++.... ...+..+||+++..+|..+.+.|++|++++||||+.++.|||
T Consensus 263 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGID 342 (1490)
T PRK09751 263 RLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGID 342 (1490)
T ss_pred HHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCC
Confidence 99865210 123678999999999999999999999999999999999999
Q ss_pred CCCCCeEEEecCCCChhHHHHHhhhcccCC-CCceEEEEec
Q 013826 356 VEGVNNVVNYDKPAYIKTYIHRAGRTARAG-QLGRCFTLLH 395 (436)
Q Consensus 356 i~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~-~~g~~~~~~~ 395 (436)
++.+++||+++.|.++.+|+||+||+||.. ..+.++++..
T Consensus 343 Ig~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 343 MGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred cccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 999999999999999999999999999963 2355554443
No 53
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.7e-37 Score=293.75 Aligned_cols=306 Identities=17% Similarity=0.169 Sum_probs=206.2
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh
Q 013826 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 83 (436)
..||++|.+++..++. ++++++++|||+|||.++...+ ..+... ...++||++||++|+.||.+.+..++...
T Consensus 113 ~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~-~~~~~~--~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 113 IEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLS-RYYLEN--YEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred CCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHH-HHHHhc--CCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 4799999999887764 6789999999999999765433 222222 23389999999999999999999876432
Q ss_pred CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhH
Q 013826 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 163 (436)
Q Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~ 163 (436)
...+..+.++.... .+.+|+|+||+++.+... ..+++++++|+||||+
T Consensus 186 ~~~~~~i~~g~~~~----------------------------~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~ 233 (501)
T PHA02558 186 REAMHKIYSGTAKD----------------------------TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHL 233 (501)
T ss_pred ccceeEEecCcccC----------------------------CCCCEEEeeHHHHhhchh----hhccccCEEEEEchhc
Confidence 23333333333211 124899999999875432 2367899999999999
Q ss_pred HhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc-cc
Q 013826 164 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LD 242 (436)
Q Consensus 164 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~-~~ 242 (436)
+.+..+...+.. +.. ..+.+++|||+.+....... ..
T Consensus 234 ~~~~~~~~il~~----~~~--------------------------------------~~~~lGLTATp~~~~~~~~~~~~ 271 (501)
T PHA02558 234 FTGKSLTSIITK----LDN--------------------------------------CKFKFGLTGSLRDGKANILQYVG 271 (501)
T ss_pred ccchhHHHHHHh----hhc--------------------------------------cceEEEEeccCCCccccHHHHHH
Confidence 976654433322 211 12468899998653321110 00
Q ss_pred cCCceeeecCCcc------------------ccCCc-------cc-cceeeeccCcCcHHHHHHHHHh--cCCCcEEEEc
Q 013826 243 LHHPLFLTTGETR------------------YKLPE-------RL-ESYKLICESKLKPLYLVALLQS--LGEEKCIVFT 294 (436)
Q Consensus 243 ~~~~~~~~~~~~~------------------~~~~~-------~~-~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~ 294 (436)
...+......... ..... .. ..+........+...+...... ..+.+++|||
T Consensus 272 ~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~ 351 (501)
T PHA02558 272 LFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMF 351 (501)
T ss_pred hhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 1111111100000 00000 00 0000111122233333333222 2457899999
Q ss_pred CCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEec-CCcccccCCCCCCeEEEecCCCChhH
Q 013826 295 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS-DAMTRGMDVEGVNNVVNYDKPAYIKT 373 (436)
Q Consensus 295 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t-~~~~~Gidi~~~~~vi~~~~~~s~~~ 373 (436)
.++++++.+++.|++.+ .++..+||+++..+|..+++.|++|+..+||+| +++++|+|+|++++||++.++.|...
T Consensus 352 ~~~~h~~~L~~~L~~~g---~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~ 428 (501)
T PHA02558 352 KYVEHGKPLYEMLKKVY---DKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKII 428 (501)
T ss_pred EEHHHHHHHHHHHHHcC---CCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhh
Confidence 99999999999999876 789999999999999999999999999999998 89999999999999999999999999
Q ss_pred HHHHhhhcccCCCCc-eEEEE
Q 013826 374 YIHRAGRTARAGQLG-RCFTL 393 (436)
Q Consensus 374 ~~Q~~GR~~R~~~~g-~~~~~ 393 (436)
|+|++||++|.+..+ .+.++
T Consensus 429 ~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 429 VLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred hhhhhhccccCCCCCceEEEE
Confidence 999999999976543 34444
No 54
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.1e-36 Score=295.47 Aligned_cols=315 Identities=20% Similarity=0.214 Sum_probs=218.0
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCC-cEEEECCCCchHHHHhHHHHHHHHHHhhcCCc-cEEEEcCCHHHHHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCL-RALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~-~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~-~~lil~P~~~l~~q~~~~~~~ 78 (436)
+||+ |+|+|.+++..++. |+ ++++.+|||||||.++.++++.. ... ...+ ++++++|+++|+.|+++.+..
T Consensus 12 ~G~~-PtpiQ~~~i~~il~----G~~~v~~~apTGSGKTaa~aafll~~-~~~-~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVA----GQPPESCSTPTGLGKTSIIAAWLLAV-EIG-AKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHHc----CCCcceEecCCCCcccHHHHHhhccc-ccc-ccccceEEEeCchHHHHHHHHHHHHH
Confidence 4887 99999999888764 55 68888999999998654333322 221 1233 455577999999999999999
Q ss_pred hhhhh-----------------------CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCc
Q 013826 79 IAPAV-----------------------GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 135 (436)
Q Consensus 79 ~~~~~-----------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~ 135 (436)
++... ++.+..+.|+.+...+. ..+..+++|+|+|+
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~---------------------~~l~~~p~IIVgT~ 143 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEW---------------------MLDPHRPAVIVGTV 143 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHH---------------------HhcCCCCcEEEECH
Confidence 88754 36677778887655443 44566789999997
Q ss_pred hhHHH-HhhcCCCc----------ccCCccEEEEehhhHHhhHhHhhhHHHHHhhccccccccccccccccccccccccc
Q 013826 136 GRLMD-HINATRGF----------TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 204 (436)
Q Consensus 136 ~~l~~-~l~~~~~~----------~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (436)
+.+.+ .+.++++. .+++..++|+|||| ++.+|...+..|.+....+..
T Consensus 144 D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~------------------- 202 (844)
T TIGR02621 144 DMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPD------------------- 202 (844)
T ss_pred HHHcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcc-------------------
Confidence 66633 22222111 15779999999999 577888888888876421100
Q ss_pred ccccccccccCCCCccceeeeeeccccccCchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHH--
Q 013826 205 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL-- 282 (436)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-- 282 (436)
....|.+++|||++............++............ ..+..+. ......+...+...+
T Consensus 203 --------------~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a-~ki~q~v-~v~~e~Kl~~lv~~L~~ 266 (844)
T TIGR02621 203 --------------FLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAA-KKIVKLV-PPSDEKFLSTMVKELNL 266 (844)
T ss_pred --------------cccceEEEEecCCCccHHHHHHHHccCCceeecccccccc-cceEEEE-ecChHHHHHHHHHHHHH
Confidence 0124789999999876655544444444433322221111 1112221 112222332222221
Q ss_pred -HhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHH-----HHHHHHhc----CC-------eeEEE
Q 013826 283 -QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS-----KTLKAFRE----GK-------IQVLV 345 (436)
Q Consensus 283 -~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~-----~~~~~f~~----g~-------~~vlv 345 (436)
....++++||||++++.|+.+++.|++.+ + ..+||+|...+|. .+++.|++ |+ ..|||
T Consensus 267 ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g---~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILV 341 (844)
T TIGR02621 267 LMKDSGGAILVFCRTVKHVRKVFAKLPKEK---F--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLV 341 (844)
T ss_pred HHhhCCCcEEEEECCHHHHHHHHHHHHhcC---C--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEe
Confidence 12346789999999999999999998765 3 8899999999999 77899987 44 68999
Q ss_pred ecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCc
Q 013826 346 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 388 (436)
Q Consensus 346 ~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g 388 (436)
+|++++.|+|++. ++||+...| ...|+||+||++|.|+.+
T Consensus 342 ATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~ 381 (844)
T TIGR02621 342 CTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQ 381 (844)
T ss_pred ccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCC
Confidence 9999999999986 788876655 789999999999998753
No 55
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.7e-36 Score=296.49 Aligned_cols=328 Identities=24% Similarity=0.285 Sum_probs=236.5
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013826 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
|+.++++.|++++..... .++|+++++|||+|||+++.++++..+.++ +.+++|++|+++|+.|.++++. .+.
T Consensus 28 ~~~el~~~qq~av~~~~~---~~~N~li~aPTgsGKTlIA~lai~~~l~~~---~~k~vYivPlkALa~Ek~~~~~-~~~ 100 (766)
T COG1204 28 GIDELFNPQQEAVEKGLL---SDENVLISAPTGSGKTLIALLAILSTLLEG---GGKVVYIVPLKALAEEKYEEFS-RLE 100 (766)
T ss_pred ChHHhhHHHHHHhhcccc---CCCcEEEEcCCCCchHHHHHHHHHHHHHhc---CCcEEEEeChHHHHHHHHHHhh-hHH
Confidence 456788999888777655 379999999999999999999999888764 4589999999999999999999 556
Q ss_pred hhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehh
Q 013826 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 161 (436)
Q Consensus 82 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~ 161 (436)
..|++|...+|+....... -.+++|+|+||+++-.++++... ++..++++|+||+
T Consensus 101 ~~GirV~~~TgD~~~~~~~------------------------l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEi 155 (766)
T COG1204 101 ELGIRVGISTGDYDLDDER------------------------LARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEI 155 (766)
T ss_pred hcCCEEEEecCCcccchhh------------------------hccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeee
Confidence 6699999999998755432 13459999999999988887664 7889999999999
Q ss_pred hHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhcc
Q 013826 162 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 241 (436)
Q Consensus 162 h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~ 241 (436)
|.+.++.-+..++.+....+.... ..+.+.+|||+++........
T Consensus 156 H~l~d~~RG~~lE~iv~r~~~~~~-----------------------------------~~rivgLSATlpN~~evA~wL 200 (766)
T COG1204 156 HLLGDRTRGPVLESIVARMRRLNE-----------------------------------LIRIVGLSATLPNAEEVADWL 200 (766)
T ss_pred eecCCcccCceehhHHHHHHhhCc-----------------------------------ceEEEEEeeecCCHHHHHHHh
Confidence 988766566667777766544221 257899999997654332222
Q ss_pred ccCCc--eeeecCCccccCCccccceeeecc----CcCcHHH-HHHHHHhc-CCCcEEEEcCCchhHHHHHHHHhhhcc-
Q 013826 242 DLHHP--LFLTTGETRYKLPERLESYKLICE----SKLKPLY-LVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGE- 312 (436)
Q Consensus 242 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-l~~~l~~~-~~~~~lvf~~~~~~~~~~~~~l~~~~~- 312 (436)
..... .+..... ....+.....+..... ....... +...+... +++++||||+|+..+...|+.+.+.-.
T Consensus 201 ~a~~~~~~~rp~~l-~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~ 279 (766)
T COG1204 201 NAKLVESDWRPVPL-RRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSA 279 (766)
T ss_pred CCcccccCCCCccc-ccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhh
Confidence 22211 1111111 1111111111111111 1112222 22233333 477999999999999999999973100
Q ss_pred ---------------------------------cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCC
Q 013826 313 ---------------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 359 (436)
Q Consensus 313 ---------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~ 359 (436)
...+++.+|.+++..+|..+.+.|+.|.++||+||+++..|+|+|.-
T Consensus 280 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~ 359 (766)
T COG1204 280 TLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPAR 359 (766)
T ss_pred cCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcce
Confidence 11368999999999999999999999999999999999999999976
Q ss_pred CeEE----Eec-----CCCChhHHHHHhhhcccCCCC--ceEEEEecch
Q 013826 360 NNVV----NYD-----KPAYIKTYIHRAGRTARAGQL--GRCFTLLHKD 397 (436)
Q Consensus 360 ~~vi----~~~-----~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~ 397 (436)
.+|| .++ .+-++.++.|+.||+||.|-+ |..+++....
T Consensus 360 ~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~ 408 (766)
T COG1204 360 TVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSH 408 (766)
T ss_pred EEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCc
Confidence 6555 244 234588999999999998866 7777777333
No 56
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5e-36 Score=287.87 Aligned_cols=311 Identities=19% Similarity=0.184 Sum_probs=210.2
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh
Q 013826 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 83 (436)
..|||||.+++..++..- ...++++++|||+|||++++.++.. + +.++||+||+..|+.||.+++..++...
T Consensus 254 ~~LRpYQ~eAl~~~~~~g-r~r~GIIvLPtGaGKTlvai~aa~~-l------~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVTAACT-V------KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCcCHHHHHHHHHHHhcC-CCCCcEEEeCCCCChHHHHHHHHHH-h------CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 368999999998876421 1257899999999999997765443 2 2369999999999999999999986443
Q ss_pred CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCC-------CcccCCccEE
Q 013826 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-------GFTLEHLCYL 156 (436)
Q Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~-------~~~~~~~~~i 156 (436)
+..+..++|+.... ......|+|+|++++.+...+.. .+.-..++++
T Consensus 326 ~~~I~~~tg~~k~~--------------------------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLI 379 (732)
T TIGR00603 326 DSQICRFTSDAKER--------------------------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLI 379 (732)
T ss_pred CceEEEEecCcccc--------------------------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEE
Confidence 45566666553211 01124899999998865432211 1222468899
Q ss_pred EEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCch
Q 013826 157 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236 (436)
Q Consensus 157 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 236 (436)
|+||||++.+..+...+..+... ..+.+|||+.+...
T Consensus 380 I~DEvH~lpA~~fr~il~~l~a~-------------------------------------------~RLGLTATP~ReD~ 416 (732)
T TIGR00603 380 LLDEVHVVPAAMFRRVLTIVQAH-------------------------------------------CKLGLTATLVREDD 416 (732)
T ss_pred EEEccccccHHHHHHHHHhcCcC-------------------------------------------cEEEEeecCcccCC
Confidence 99999999776665444332111 24777777764432
Q ss_pred hhhcc-ccCCceeeecCCccccCCcccc--------------------------ceeeeccCcCcHHHHHHHHHhc--CC
Q 013826 237 KLAQL-DLHHPLFLTTGETRYKLPERLE--------------------------SYKLICESKLKPLYLVALLQSL--GE 287 (436)
Q Consensus 237 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~l~~~l~~~--~~ 287 (436)
.+... .+..|.++............+. .......+..|...+..+++.+ ++
T Consensus 417 ~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g 496 (732)
T TIGR00603 417 KITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRG 496 (732)
T ss_pred chhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcC
Confidence 22111 1111222111110000000000 0011122334555555566554 67
Q ss_pred CcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcC-CeeEEEecCCcccccCCCCCCeEEEec
Q 013826 288 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVLVSSDAMTRGMDVEGVNNVVNYD 366 (436)
Q Consensus 288 ~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~t~~~~~Gidi~~~~~vi~~~ 366 (436)
.++||||.+.++++.+++.|. +..++|.++..+|..++++|++| ..++||+|.++.+|+|+|+++++|+++
T Consensus 497 ~kiLVF~~~~~~l~~~a~~L~--------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s 568 (732)
T TIGR00603 497 DKIIVFSDNVFALKEYAIKLG--------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQIS 568 (732)
T ss_pred CeEEEEeCCHHHHHHHHHHcC--------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeC
Confidence 799999999999999988773 34589999999999999999875 789999999999999999999999999
Q ss_pred CC-CChhHHHHHhhhcccCCCCceE-------EEEecchhH
Q 013826 367 KP-AYIKTYIHRAGRTARAGQLGRC-------FTLLHKDEV 399 (436)
Q Consensus 367 ~~-~s~~~~~Q~~GR~~R~~~~g~~-------~~~~~~~~~ 399 (436)
.+ .|...|+||+||++|.+..|.+ |.+++.+..
T Consensus 569 ~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 569 SHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred CCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 87 5999999999999998766554 777776543
No 57
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=279.55 Aligned_cols=325 Identities=23% Similarity=0.255 Sum_probs=215.6
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh
Q 013826 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 83 (436)
-.+|+||.+..+.++ ++|+|+++|||+|||++|+..++..+... +..+++|++|++.|+.|+.+.+..++..
T Consensus 61 ~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~--p~~KiVF~aP~~pLv~QQ~a~~~~~~~~- 132 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWR--PKGKVVFLAPTRPLVNQQIACFSIYLIP- 132 (746)
T ss_pred ccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcC--CcceEEEeeCCchHHHHHHHHHhhccCc-
Confidence 468999988766654 79999999999999999999999988875 4579999999999999999777777643
Q ss_pred CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhH
Q 013826 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 163 (436)
Q Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~ 163 (436)
.-.++...|..+.... ..+...++|+|+||+.+.+.+.......++.|.++||||||+
T Consensus 133 ~~~T~~l~~~~~~~~r----------------------~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hr 190 (746)
T KOG0354|consen 133 YSVTGQLGDTVPRSNR----------------------GEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHR 190 (746)
T ss_pred ccceeeccCccCCCch----------------------hhhhcccceEEeChHhhhhhcccccccccceEEEEEEccccc
Confidence 1222333333333222 134456699999999999998876545579999999999999
Q ss_pred HhhHhHhhhHH-HHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc--
Q 013826 164 LLREAYQAWLP-TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-- 240 (436)
Q Consensus 164 ~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~-- 240 (436)
......+..+. .+...-... .|.+.+|||+-.+......
T Consensus 191 a~kn~~Y~~Vmr~~l~~k~~~--------------------------------------~qILgLTASpG~~~~~v~~~I 232 (746)
T KOG0354|consen 191 TSKNHPYNNIMREYLDLKNQG--------------------------------------NQILGLTASPGSKLEQVQNVI 232 (746)
T ss_pred ccccccHHHHHHHHHHhhhcc--------------------------------------ccEEEEecCCCccHHHHHHHH
Confidence 86665554444 222211110 0233333333322000000
Q ss_pred --------------------------------------------------------cccCC--------ce--eeecCCc
Q 013826 241 --------------------------------------------------------LDLHH--------PL--FLTTGET 254 (436)
Q Consensus 241 --------------------------------------------------------~~~~~--------~~--~~~~~~~ 254 (436)
.++.. .. .......
T Consensus 233 ~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 312 (746)
T KOG0354|consen 233 DNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAA 312 (746)
T ss_pred HhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhh
Confidence 00000 00 0000000
Q ss_pred cccCCcccc----------------------------------------c-----------------------eeee-cc
Q 013826 255 RYKLPERLE----------------------------------------S-----------------------YKLI-CE 270 (436)
Q Consensus 255 ~~~~~~~~~----------------------------------------~-----------------------~~~~-~~ 270 (436)
....+...+ . +... ..
T Consensus 313 ~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~ 392 (746)
T KOG0354|consen 313 APNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPK 392 (746)
T ss_pred ccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCc
Confidence 000000000 0 0000 00
Q ss_pred CcCcHHHHHHHHH----hcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEec--------cccchHHHHHHHHHHhc
Q 013826 271 SKLKPLYLVALLQ----SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS--------GLQRQSVRSKTLKAFRE 338 (436)
Q Consensus 271 ~~~~~~~l~~~l~----~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~~~~~r~~~~~~f~~ 338 (436)
...|...+.+++. .....++|||+.+++.|..+-..|.+....++....+. .+|+..+..++++.|++
T Consensus 393 ~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~ 472 (746)
T KOG0354|consen 393 ENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRD 472 (746)
T ss_pred cChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhC
Confidence 1233333433332 22567999999999999999999985433333333333 38889999999999999
Q ss_pred CCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchh
Q 013826 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398 (436)
Q Consensus 339 g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 398 (436)
|+.+|||||++.+||+|++.|+.||.|+...|+..++||+|| ||. +.|+|+.+.+...
T Consensus 473 G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~ 530 (746)
T KOG0354|consen 473 GEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSE 530 (746)
T ss_pred CCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchh
Confidence 999999999999999999999999999999999999999999 896 4789999988543
No 58
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=6.7e-35 Score=278.19 Aligned_cols=370 Identities=20% Similarity=0.255 Sum_probs=260.5
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh------cCCccEEEEcCCHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------VRCLRALVVLPTRDLALQVKD 74 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~------~~~~~~lil~P~~~l~~q~~~ 74 (436)
|+|.+++..|.+++..++. ++.|+|||||||+|||-++++.++..+.... ..+.+++|++|+++|+.++.+
T Consensus 106 f~f~~fN~iQS~vFp~aY~---SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~ 182 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYK---SNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVD 182 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhc---CCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHH
Confidence 6788999999999998886 6899999999999999999999999887521 245689999999999999999
Q ss_pred HHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCC--CcccCC
Q 013826 75 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR--GFTLEH 152 (436)
Q Consensus 75 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~--~~~~~~ 152 (436)
.|.+-+...|+.+.-++|+......- -..++|+|+||+++=-.-+++. ...++.
T Consensus 183 ~~~kkl~~~gi~v~ELTGD~ql~~te------------------------i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~ 238 (1230)
T KOG0952|consen 183 KFSKKLAPLGISVRELTGDTQLTKTE------------------------IADTQIIVTTPEKWDVVTRKSVGDSALFSL 238 (1230)
T ss_pred HHhhhcccccceEEEecCcchhhHHH------------------------HHhcCEEEecccceeeeeeeeccchhhhhh
Confidence 99988888899999999998654431 1245999999999832222222 123677
Q ss_pred ccEEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccc
Q 013826 153 LCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232 (436)
Q Consensus 153 ~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~ 232 (436)
++++|+||+|.+ .+.-+..++.++.++..... ..-..++.+.+|||++
T Consensus 239 V~LviIDEVHlL-hd~RGpvlEtiVaRtlr~ve-------------------------------ssqs~IRivgLSATlP 286 (1230)
T KOG0952|consen 239 VRLVIIDEVHLL-HDDRGPVLETIVARTLRLVE-------------------------------SSQSMIRIVGLSATLP 286 (1230)
T ss_pred eeeEEeeeehhh-cCcccchHHHHHHHHHHHHH-------------------------------hhhhheEEEEeeccCC
Confidence 999999999966 44455667777665532111 0002346899999998
Q ss_pred cCchhhhccccCC---ceeeecCCccccCCccccceeeeccCc---CcH-----HHHHHHHHhc-CCCcEEEEcCCchhH
Q 013826 233 QDPNKLAQLDLHH---PLFLTTGETRYKLPERLESYKLICESK---LKP-----LYLVALLQSL-GEEKCIVFTSSVEST 300 (436)
Q Consensus 233 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~l~~~l~~~-~~~~~lvf~~~~~~~ 300 (436)
+-.+....+.... ...+..+.+ +.++.......... .+. ....+..+.. ++.+++|||+++..+
T Consensus 287 N~eDvA~fL~vn~~~glfsFd~~yR----PvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~T 362 (1230)
T KOG0952|consen 287 NYEDVARFLRVNPYAGLFSFDQRYR----PVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNET 362 (1230)
T ss_pred CHHHHHHHhcCCCccceeeeccccc----ccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHH
Confidence 7655444444321 122222222 12222222211111 111 1222222222 467899999999999
Q ss_pred HHHHHHHhhhcc-----------c---------ceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCC
Q 013826 301 HRLCTLLNHFGE-----------L---------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 360 (436)
Q Consensus 301 ~~~~~~l~~~~~-----------~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~ 360 (436)
.+.|+.|.+... . ..+.+.+|.+|...+|..+.+.|..|.++||+||..+..|+|+|.--
T Consensus 363 i~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~a 442 (1230)
T KOG0952|consen 363 IRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYA 442 (1230)
T ss_pred HHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceE
Confidence 999999876421 0 14688999999999999999999999999999999999999999754
Q ss_pred eEEE----ecCC------CChhHHHHHhhhcccCCCC--ceEEEEecchhHHHHHHHHHHhcCCCCCCCCCChhhhhhhh
Q 013826 361 NVVN----YDKP------AYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLR 428 (436)
Q Consensus 361 ~vi~----~~~~------~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (436)
++|- +++. -++.+.+|..||+||...+ |.++++.+.+....+.+++. .......++-..++++||
T Consensus 443 ViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~---~~~piES~~~~~L~dnLn 519 (1230)
T KOG0952|consen 443 VIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLT---GQNPIESQLLPCLIDNLN 519 (1230)
T ss_pred EEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHc---CCChhHHHHHHHHHHhhh
Confidence 4442 2222 2477889999999996654 88888877666666666653 333444557778888888
Q ss_pred hccccCCC
Q 013826 429 PVYKSGDV 436 (436)
Q Consensus 429 ~~~~~~~~ 436 (436)
.+..-|.|
T Consensus 520 AEi~LgTV 527 (1230)
T KOG0952|consen 520 AEISLGTV 527 (1230)
T ss_pred hheeecee
Confidence 88776643
No 59
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.7e-34 Score=266.34 Aligned_cols=314 Identities=19% Similarity=0.200 Sum_probs=204.1
Q ss_pred cEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhc
Q 013826 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 105 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 105 (436)
++++.+|||+|||.+++++++..+... ...+++|++|+++|+.|+++.+..++. ..+...++....... .....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~--~~~~ii~v~P~~~L~~q~~~~l~~~f~---~~~~~~~~~~~~~~~-~~~~~ 74 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ--KADRVIIALPTRATINAMYRRAKELFG---SNLGLLHSSSSFKRI-KEMGD 74 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC--CCCeEEEEeehHHHHHHHHHHHHHHhC---cccEEeeccHHHHHH-hccCC
Confidence 478999999999999999999876543 456899999999999999999998763 244445554432110 00000
Q ss_pred cccccccccCCchhHHHhh------ccCCcEEEeCchhHHHHhhcCCC---ccc--CCccEEEEehhhHHhhHhHhhhHH
Q 013826 106 RPKLEAGICYDPEDVLQEL------QSAVDILVATPGRLMDHINATRG---FTL--EHLCYLVVDETDRLLREAYQAWLP 174 (436)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~------~~~~~Iii~T~~~l~~~l~~~~~---~~~--~~~~~iIiDE~h~~~~~~~~~~~~ 174 (436)
.. .....+... ....+|+++||+++.+.+..+.. ..+ -..+++|+||+|.+.+..+.. +.
T Consensus 75 ~~--------~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~ 145 (358)
T TIGR01587 75 SE--------EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-IL 145 (358)
T ss_pred ch--------hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HH
Confidence 00 000011111 12357999999999887765221 111 123799999999987654433 44
Q ss_pred HHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhccccCCceeeecCCc
Q 013826 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 254 (436)
Q Consensus 175 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~ 254 (436)
.++..+.. ...+.+++|||++.....+.......+........
T Consensus 146 ~~l~~l~~-------------------------------------~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~ 188 (358)
T TIGR01587 146 AVLEVLKD-------------------------------------NDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLK 188 (358)
T ss_pred HHHHHHHH-------------------------------------cCCCEEEEecCchHHHHHHHhcCCCcccccCCCCc
Confidence 44433321 12367999999975544443322221111000000
Q ss_pred cccCCcc-ccce-eeeccCcCcHHHHHHHHHhc-CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHH
Q 013826 255 RYKLPER-LESY-KLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 331 (436)
Q Consensus 255 ~~~~~~~-~~~~-~~~~~~~~~~~~l~~~l~~~-~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~ 331 (436)
..... ...+ ........+...+..+++.. .++++||||+++++++.+++.|++.+. ...+..+||+++..+|.+
T Consensus 189 --~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~-~~~~~~~h~~~~~~~r~~ 265 (358)
T TIGR01587 189 --EERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAP-EEEIMLLHSRFTEKDRAK 265 (358)
T ss_pred --cccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcC-CCeEEEEECCCCHHHHHH
Confidence 00000 0111 11112233455555555443 467999999999999999999987642 236899999999999876
Q ss_pred H----HHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCC----ceEEEEecch
Q 013826 332 T----LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL----GRCFTLLHKD 397 (436)
Q Consensus 332 ~----~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~----g~~~~~~~~~ 397 (436)
. ++.|++|+.++||||+++++|+|++ ++.++.+..| +.+|+||+||+||.|++ |.++++....
T Consensus 266 ~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 266 KEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 4 8899999999999999999999995 7778877655 78999999999998754 3778776644
No 60
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=5.2e-35 Score=262.58 Aligned_cols=327 Identities=24% Similarity=0.267 Sum_probs=246.2
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+|++.+.|.|.-+++. .++.|+|.++..+|+||||++.-++=+..+.. .+.+.||++|..+|++|-++.|+...
T Consensus 212 ~G~~eLlPVQ~laVe~---GLLeG~nllVVSaTasGKTLIgElAGi~~~l~---~g~KmlfLvPLVALANQKy~dF~~rY 285 (830)
T COG1202 212 EGIEELLPVQVLAVEA---GLLEGENLLVVSATASGKTLIGELAGIPRLLS---GGKKMLFLVPLVALANQKYEDFKERY 285 (830)
T ss_pred cCcceecchhhhhhhh---ccccCCceEEEeccCCCcchHHHhhCcHHHHh---CCCeEEEEehhHHhhcchHHHHHHHh
Confidence 4899999999877554 55679999999999999999988776666555 34589999999999999999999888
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013826 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
...|+.+.+-+|-......... +.-......+|+|+||+-+-.++..+ ..+.++++|||||
T Consensus 286 s~LglkvairVG~srIk~~~~p-----------------v~~~t~~dADIIVGTYEGiD~lLRtg--~~lgdiGtVVIDE 346 (830)
T COG1202 286 SKLGLKVAIRVGMSRIKTREEP-----------------VVVDTSPDADIIVGTYEGIDYLLRTG--KDLGDIGTVVIDE 346 (830)
T ss_pred hcccceEEEEechhhhcccCCc-----------------cccCCCCCCcEEEeechhHHHHHHcC--CcccccceEEeee
Confidence 8889988888877654333110 11122344699999999999888875 4488999999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc
Q 013826 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 240 (436)
+|.+.+..-+.-+..+..+++... +.-|.+.+|||.-+ +.+++.
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~-----------------------------------~~AQ~i~LSATVgN-p~elA~ 390 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLF-----------------------------------PGAQFIYLSATVGN-PEELAK 390 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhC-----------------------------------CCCeEEEEEeecCC-hHHHHH
Confidence 998877655555555555554422 23488999999954 444444
Q ss_pred cccCCceeeecCCccccCCcccc-ceeeeccCcCcHHHHHHHHHhc--------CCCcEEEEcCCchhHHHHHHHHhhhc
Q 013826 241 LDLHHPLFLTTGETRYKLPERLE-SYKLICESKLKPLYLVALLQSL--------GEEKCIVFTSSVESTHRLCTLLNHFG 311 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~--------~~~~~lvf~~~~~~~~~~~~~l~~~~ 311 (436)
..-.....+..+ +.+++ +.........|......+.+.- ..+++|||++|++.|..++.+|...|
T Consensus 391 ~l~a~lV~y~~R------PVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG 464 (830)
T COG1202 391 KLGAKLVLYDER------PVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKG 464 (830)
T ss_pred HhCCeeEeecCC------CCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCC
Confidence 443444433321 12232 2333444556666665555322 35789999999999999999999877
Q ss_pred ccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEE---EecCCC-ChhHHHHHhhhcccCCC-
Q 013826 312 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV---NYDKPA-YIKTYIHRAGRTARAGQ- 386 (436)
Q Consensus 312 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi---~~~~~~-s~~~~~Q~~GR~~R~~~- 386 (436)
+.+..||++++..+|..+...|.++++.++|+|..++.|+|+|.-++++ .++..| |+.+|.||.||+||.+-
T Consensus 465 ---~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yH 541 (830)
T COG1202 465 ---LKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYH 541 (830)
T ss_pred ---cccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcc
Confidence 9999999999999999999999999999999999999999999755443 233343 79999999999999763
Q ss_pred -CceEEEEecch
Q 013826 387 -LGRCFTLLHKD 397 (436)
Q Consensus 387 -~g~~~~~~~~~ 397 (436)
.|++|++..+.
T Consensus 542 drGkVyllvepg 553 (830)
T COG1202 542 DRGKVYLLVEPG 553 (830)
T ss_pred cCceEEEEecCC
Confidence 49999997653
No 61
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.7e-34 Score=283.89 Aligned_cols=307 Identities=20% Similarity=0.243 Sum_probs=215.4
Q ss_pred HhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh-hhhCceEEEeccC
Q 013826 15 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA-PAVGLSVGLAVGQ 93 (436)
Q Consensus 15 ~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~-~~~~~~v~~~~~~ 93 (436)
+.++..+..+++++++++||||||..+.+++++... .+.+++++.|++.++.|+++.+.... ...|..++...+.
T Consensus 8 ~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~----~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~ 83 (819)
T TIGR01970 8 PALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG----IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRG 83 (819)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc----cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcc
Confidence 334444456899999999999999998888887652 34589999999999999999886443 2334444443332
Q ss_pred cchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhH-HhhHhHh-h
Q 013826 94 SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR-LLREAYQ-A 171 (436)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~-~~~~~~~-~ 171 (436)
.. ....+++|+|+|++.|.+.+... ..++++++|||||+|. .++..+. .
T Consensus 84 ~~---------------------------~~s~~t~I~v~T~G~Llr~l~~d--~~L~~v~~VIiDEaHER~L~~Dl~L~ 134 (819)
T TIGR01970 84 EN---------------------------KVSRRTRLEVVTEGILTRMIQDD--PELDGVGALIFDEFHERSLDADLGLA 134 (819)
T ss_pred cc---------------------------ccCCCCcEEEECCcHHHHHHhhC--cccccCCEEEEeccchhhhccchHHH
Confidence 21 11234589999999999988763 4588999999999995 4443322 1
Q ss_pred hHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhccccCCceeeec
Q 013826 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 251 (436)
Q Consensus 172 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~ 251 (436)
.+..+...++ +..+.+++|||+.... + ..++.++..+..
T Consensus 135 ll~~i~~~lr--------------------------------------~dlqlIlmSATl~~~~--l-~~~l~~~~vI~~ 173 (819)
T TIGR01970 135 LALDVQSSLR--------------------------------------EDLKILAMSATLDGER--L-SSLLPDAPVVES 173 (819)
T ss_pred HHHHHHHhcC--------------------------------------CCceEEEEeCCCCHHH--H-HHHcCCCcEEEe
Confidence 1222222211 2357899999997542 2 233333333322
Q ss_pred CCccccCCccccceeeeccCcCcH-----HHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccch
Q 013826 252 GETRYKLPERLESYKLICESKLKP-----LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 326 (436)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 326 (436)
.....+ ++.+........+. ..+..++.. ..+.+|||+++.++++.+++.|++....++.+..+||+++.
T Consensus 174 ~gr~~p----Ve~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~ 248 (819)
T TIGR01970 174 EGRSFP----VEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSL 248 (819)
T ss_pred cCccee----eeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCH
Confidence 222211 22222222211111 223333332 46789999999999999999998742245889999999999
Q ss_pred HHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCC------------------ChhHHHHHhhhcccCCCCc
Q 013826 327 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------------------YIKTYIHRAGRTARAGQLG 388 (436)
Q Consensus 327 ~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~------------------s~~~~~Q~~GR~~R~~~~g 388 (436)
.+|.++++.|.+|+.+|||+|++++.|+|+|++++||.++.+. |..++.||.||+||. .+|
T Consensus 249 ~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G 327 (819)
T TIGR01970 249 AAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPG 327 (819)
T ss_pred HHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCC
Confidence 9999999999999999999999999999999999999988764 345689999999998 699
Q ss_pred eEEEEecchhHHH
Q 013826 389 RCFTLLHKDEVKR 401 (436)
Q Consensus 389 ~~~~~~~~~~~~~ 401 (436)
.||.+++..+...
T Consensus 328 ~cyrL~t~~~~~~ 340 (819)
T TIGR01970 328 VCYRLWSEEQHQR 340 (819)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999876544
No 62
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2.8e-34 Score=277.23 Aligned_cols=320 Identities=15% Similarity=0.106 Sum_probs=218.9
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHH---------HHHHHHHH--hhcCCccEEEEcCCHHHHHHH
Q 013826 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL---------PIVQTLSN--RAVRCLRALVVLPTRDLALQV 72 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~---------~~~~~~~~--~~~~~~~~lil~P~~~l~~q~ 72 (436)
..+++.|.++.+++++.+..++++++.|+||+|||.+.-. +.+..+.. ......++++++|+++|+.|+
T Consensus 159 ~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi 238 (675)
T PHA02653 159 IPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLH 238 (675)
T ss_pred ccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHH
Confidence 3578999999999999999999999999999999986321 22222211 011345799999999999999
Q ss_pred HHHHHHhhhh---hCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcc
Q 013826 73 KDVFAAIAPA---VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 149 (436)
Q Consensus 73 ~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~ 149 (436)
...+...... .+..+....|+.+.... .......+|+++|++... ..
T Consensus 239 ~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~----------------------~t~~k~~~Ilv~T~~L~l--------~~ 288 (675)
T PHA02653 239 SITLLKSLGFDEIDGSPISLKYGSIPDELI----------------------NTNPKPYGLVFSTHKLTL--------NK 288 (675)
T ss_pred HHHHHHHhCccccCCceEEEEECCcchHHh----------------------hcccCCCCEEEEeCcccc--------cc
Confidence 9888765433 25566777777652110 011124589999965211 23
Q ss_pred cCCccEEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeecc
Q 013826 150 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 229 (436)
Q Consensus 150 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sa 229 (436)
+++++++|+||||.+...+ ..+..+++.... ...+.+++||
T Consensus 289 L~~v~~VVIDEaHEr~~~~--DllL~llk~~~~-------------------------------------~~rq~ILmSA 329 (675)
T PHA02653 289 LFDYGTVIIDEVHEHDQIG--DIIIAVARKHID-------------------------------------KIRSLFLMTA 329 (675)
T ss_pred cccCCEEEccccccCccch--hHHHHHHHHhhh-------------------------------------hcCEEEEEcc
Confidence 7789999999999875443 223333321110 1126899999
Q ss_pred ccccCchhhhccccCCceeeecCCccccCCccccceeeecc----------CcCcHHHHHHHHHh--cCCCcEEEEcCCc
Q 013826 230 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE----------SKLKPLYLVALLQS--LGEEKCIVFTSSV 297 (436)
Q Consensus 230 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~l~~--~~~~~~lvf~~~~ 297 (436)
|++.....+ ...+.++..+...... ..+++.+..... ...+...+..+... ..++.+|||++++
T Consensus 330 Tl~~dv~~l-~~~~~~p~~I~I~grt---~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~ 405 (675)
T PHA02653 330 TLEDDRDRI-KEFFPNPAFVHIPGGT---LFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASV 405 (675)
T ss_pred CCcHhHHHH-HHHhcCCcEEEeCCCc---CCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcH
Confidence 997666555 3455566554433211 112222221111 01122222222222 2346899999999
Q ss_pred hhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHH-hcCCeeEEEecCCcccccCCCCCCeEEEec---CCC----
Q 013826 298 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF-REGKIQVLVSSDAMTRGMDVEGVNNVVNYD---KPA---- 369 (436)
Q Consensus 298 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f-~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~---~~~---- 369 (436)
++++.+++.|++.. .+..+..+||+++.. ++.+++| ++|+.+|||+|+++++|+|+|++++||.++ .|.
T Consensus 406 ~ei~~l~~~L~~~~-~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g 482 (675)
T PHA02653 406 SQCEEYKKYLEKRL-PIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGG 482 (675)
T ss_pred HHHHHHHHHHHhhc-CCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccC
Confidence 99999999998752 237899999999874 5667777 689999999999999999999999999997 444
Q ss_pred -----ChhHHHHHhhhcccCCCCceEEEEecchhHH
Q 013826 370 -----YIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 400 (436)
Q Consensus 370 -----s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 400 (436)
|.++|.||.||+||. ++|.|+.++++.+..
T Consensus 483 ~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 483 KEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLK 517 (675)
T ss_pred cccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhH
Confidence 788999999999998 699999999887653
No 63
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2.1e-33 Score=287.02 Aligned_cols=312 Identities=22% Similarity=0.340 Sum_probs=207.1
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+|+ .|+++|..++..++ .+++++++||||+|||..++ ++...+.. .+.+++|++||++|+.|+++.+..++
T Consensus 77 ~G~-~pt~iQ~~~i~~il----~g~dv~i~ApTGsGKT~f~l-~~~~~l~~---~g~~alIL~PTreLa~Qi~~~l~~l~ 147 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLL----LGESFAIIAPTGVGKTTFGL-VMSLYLAK---KGKKSYIIFPTRLLVEQVVEKLEKFG 147 (1176)
T ss_pred cCC-CCcHHHHHHHHHHH----CCCcEEEEcCCCCCHHHHHH-HHHHHHHh---cCCeEEEEeccHHHHHHHHHHHHHHh
Confidence 477 79999998888776 48999999999999996443 33333322 45689999999999999999999998
Q ss_pred hhhCceEEEeccCcchh-HHHHHhhccccccccccCCchhHHHhhc-cCCcEEEeCchhHHHHhhcCCCcccCCccEEEE
Q 013826 81 PAVGLSVGLAVGQSSIA-DEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVV 158 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIi 158 (436)
...++.+....|+.... .+. .+....+. ..++|+|+||+.|.+.+.. +....++++|+
T Consensus 148 ~~~~~~~~~~~g~~~~~~~ek-----------------~~~~~~l~~~~~~IlV~Tp~rL~~~~~~---l~~~~~~~lVv 207 (1176)
T PRK09401 148 EKVGCGVKILYYHSSLKKKEK-----------------EEFLERLKEGDFDILVTTSQFLSKNFDE---LPKKKFDFVFV 207 (1176)
T ss_pred hhcCceEEEEEccCCcchhHH-----------------HHHHHHHhcCCCCEEEECHHHHHHHHHh---ccccccCEEEE
Confidence 87777777776665421 111 11112222 3479999999999887763 44567999999
Q ss_pred ehhhHHhhH-----------hHh-hhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeee
Q 013826 159 DETDRLLRE-----------AYQ-AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 226 (436)
Q Consensus 159 DE~h~~~~~-----------~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (436)
||||++++. +|. ..+..++..++..... ...+..... +...+........+.++
T Consensus 208 DEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~---------~~~~~~i~~-----l~~~i~~~~~~~~q~il 273 (1176)
T PRK09401 208 DDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKY---------EEIYEKIRE-----LEEKIAELKDKKGVLVV 273 (1176)
T ss_pred EChHHhhhcccchhhHHHhCCCCHHHHHHHHHhccccccc---------chhhhHHHH-----HHHhhhhcccCCceEEE
Confidence 999999863 332 3455555554321110 000000000 00001000112457899
Q ss_pred eccccccCchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchh---HHHH
Q 013826 227 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES---THRL 303 (436)
Q Consensus 227 ~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~---~~~~ 303 (436)
+|||.++..... ..+.++..+..+...... ..+........ .+...+.++++... .++||||++.+. ++.+
T Consensus 274 fSAT~~~~~~~~--~l~~~ll~~~v~~~~~~~-rnI~~~yi~~~--~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l 347 (1176)
T PRK09401 274 SSATGRPRGNRV--KLFRELLGFEVGSPVFYL-RNIVDSYIVDE--DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEEL 347 (1176)
T ss_pred EeCCCCccchHH--HHhhccceEEecCccccc-CCceEEEEEcc--cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHH
Confidence 999997642211 111222222222222111 22222222222 56667777776654 589999999877 9999
Q ss_pred HHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEe----cCCcccccCCCC-CCeEEEecCCC
Q 013826 304 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEG-VNNVVNYDKPA 369 (436)
Q Consensus 304 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~----t~~~~~Gidi~~-~~~vi~~~~~~ 369 (436)
++.|++.+ +.+..+||+| ...+++|++|+++|||+ |+.+++|+|+|+ ++.||+++.|.
T Consensus 348 ~~~L~~~g---i~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 348 AEYLEDLG---INAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred HHHHHHCC---CcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 99999887 8999999999 23469999999999999 689999999999 89999999886
No 64
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=4.7e-34 Score=282.94 Aligned_cols=307 Identities=21% Similarity=0.249 Sum_probs=214.1
Q ss_pred HhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh-hhhCceEEEeccC
Q 013826 15 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA-PAVGLSVGLAVGQ 93 (436)
Q Consensus 15 ~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~-~~~~~~v~~~~~~ 93 (436)
+.+++.+.+++++++.++||||||.++.+++++... .+.+++++.|++.++.|+++.+.... ...|..++...+.
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~----~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~ 86 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG----INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRA 86 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC----cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecC
Confidence 445555556899999999999999998887776431 23489999999999999999886443 3345555555444
Q ss_pred cchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHH-hhHhH-hh
Q 013826 94 SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL-LREAY-QA 171 (436)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~-~~~~~-~~ 171 (436)
... .....+|+|+|++.|.+.+... ..++++++||+||+|.. .+..+ -.
T Consensus 87 ~~~---------------------------~~~~t~I~v~T~G~Llr~l~~d--~~L~~v~~IIlDEaHER~l~~Dl~L~ 137 (812)
T PRK11664 87 ESK---------------------------VGPNTRLEVVTEGILTRMIQRD--PELSGVGLVILDEFHERSLQADLALA 137 (812)
T ss_pred ccc---------------------------cCCCCcEEEEChhHHHHHHhhC--CCcCcCcEEEEcCCCccccccchHHH
Confidence 321 1123479999999999988753 45899999999999962 22111 11
Q ss_pred hHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhccccCCceeeec
Q 013826 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 251 (436)
Q Consensus 172 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~ 251 (436)
.+..+.+.++ +..+.+++|||+... .+ ...+.++..+..
T Consensus 138 ll~~i~~~lr--------------------------------------~~lqlilmSATl~~~--~l-~~~~~~~~~I~~ 176 (812)
T PRK11664 138 LLLDVQQGLR--------------------------------------DDLKLLIMSATLDND--RL-QQLLPDAPVIVS 176 (812)
T ss_pred HHHHHHHhCC--------------------------------------ccceEEEEecCCCHH--HH-HHhcCCCCEEEe
Confidence 1222222111 235789999999643 22 233333333322
Q ss_pred CCccccCCccccceeeeccCcCcHH-----HHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccch
Q 013826 252 GETRYKLPERLESYKLICESKLKPL-----YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 326 (436)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 326 (436)
.....+ +..+........+.. .+...+.. ..+.+|||+++.++++.+++.|++....++.+..+||+++.
T Consensus 177 ~gr~~p----V~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~ 251 (812)
T PRK11664 177 EGRSFP----VERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSL 251 (812)
T ss_pred cCcccc----ceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCH
Confidence 222111 122222112222221 23333332 46889999999999999999998733345789999999999
Q ss_pred HHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCC------------------ChhHHHHHhhhcccCCCCc
Q 013826 327 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------------------YIKTYIHRAGRTARAGQLG 388 (436)
Q Consensus 327 ~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~------------------s~~~~~Q~~GR~~R~~~~g 388 (436)
.++..++..|++|+.+|||+|++++.|+|+|++++||..+.+. |..++.||.||+||. .+|
T Consensus 252 ~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G 330 (812)
T PRK11664 252 AEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPG 330 (812)
T ss_pred HHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCc
Confidence 9999999999999999999999999999999999999977653 345899999999998 599
Q ss_pred eEEEEecchhHHH
Q 013826 389 RCFTLLHKDEVKR 401 (436)
Q Consensus 389 ~~~~~~~~~~~~~ 401 (436)
.||.++++.+...
T Consensus 331 ~cyrL~t~~~~~~ 343 (812)
T PRK11664 331 ICLHLYSKEQAER 343 (812)
T ss_pred EEEEecCHHHHhh
Confidence 9999999876543
No 65
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.7e-33 Score=279.33 Aligned_cols=334 Identities=24% Similarity=0.305 Sum_probs=247.6
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013826 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
|...|++||.+|++.+.+ |++++|..|||||||.++++|+++.+...+ ..++|++.||++|++.+.+.++++..
T Consensus 67 g~~~lY~HQ~~A~~~~~~----G~~vvVtTgTgSGKTe~FllPIld~~l~~~--~a~AL~lYPtnALa~DQ~~rl~~~~~ 140 (851)
T COG1205 67 GIERLYSHQVDALRLIRE----GRNVVVTTGTGSGKTESFLLPILDHLLRDP--SARALLLYPTNALANDQAERLRELIS 140 (851)
T ss_pred ccccccHHHHHHHHHHHC----CCCEEEECCCCCchhHHHHHHHHHHHhhCc--CccEEEEechhhhHhhHHHHHHHHHH
Confidence 566799999999998875 899999999999999999999999998863 44899999999999999999999998
Q ss_pred hhC--ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCC---cccCCccEE
Q 013826 82 AVG--LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG---FTLEHLCYL 156 (436)
Q Consensus 82 ~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~---~~~~~~~~i 156 (436)
..+ +....++|+.+-.... ....+.++|+++||++|...+.++.. +.++++++|
T Consensus 141 ~~~~~v~~~~y~Gdt~~~~r~---------------------~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~l 199 (851)
T COG1205 141 DLPGKVTFGRYTGDTPPEERR---------------------AIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYL 199 (851)
T ss_pred hCCCcceeeeecCCCChHHHH---------------------HHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEE
Confidence 887 7888888888754432 23455679999999999886655443 247789999
Q ss_pred EEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCch
Q 013826 157 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236 (436)
Q Consensus 157 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 236 (436)
|+||+|.+ ...+++.+-.+++++...... .....+.++.|||......
T Consensus 200 VvDElHtY-rGv~GS~vA~llRRL~~~~~~-------------------------------~~~~~q~i~~SAT~~np~e 247 (851)
T COG1205 200 VVDELHTY-RGVQGSEVALLLRRLLRRLRR-------------------------------YGSPLQIICTSATLANPGE 247 (851)
T ss_pred EEecceec-cccchhHHHHHHHHHHHHHhc-------------------------------cCCCceEEEEeccccChHH
Confidence 99999965 555555555555544321110 0024578999999987665
Q ss_pred hhhccccCCceeeecCCccccCCccccceeeecc---------CcCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHH-
Q 013826 237 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICE---------SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLC- 304 (436)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~~~- 304 (436)
............. ......+...+.+....+ .......+..+.... .+-++|+|+.++..++.+.
T Consensus 248 ~~~~l~~~~f~~~---v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~ 324 (851)
T COG1205 248 FAEELFGRDFEVP---VDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYL 324 (851)
T ss_pred HHHHhcCCcceee---ccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhh
Confidence 5555444433331 111111222222222222 112333333333222 5679999999999999996
Q ss_pred ---HHHhhhc-ccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCC-ChhHHHHHhh
Q 013826 305 ---TLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAG 379 (436)
Q Consensus 305 ---~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~-s~~~~~Q~~G 379 (436)
..+...+ .....+..+++++.+.+|..+...|++|+..++++|++++.|+|+.+++.||..+.|. +..++.|+.|
T Consensus 325 ~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~G 404 (851)
T COG1205 325 SPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAG 404 (851)
T ss_pred chhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhh
Confidence 3333333 3345689999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred hcccCCCCceEEEEecch
Q 013826 380 RTARAGQLGRCFTLLHKD 397 (436)
Q Consensus 380 R~~R~~~~g~~~~~~~~~ 397 (436)
|+||.++.+.++.+....
T Consensus 405 RaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 405 RAGRRGQESLVLVVLRSD 422 (851)
T ss_pred hccCCCCCceEEEEeCCC
Confidence 999998777777666543
No 66
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=4.7e-33 Score=282.23 Aligned_cols=359 Identities=21% Similarity=0.266 Sum_probs=219.3
Q ss_pred CCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhh
Q 013826 3 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 82 (436)
Q Consensus 3 ~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 82 (436)
.-++|+||.++...++. +++++++|||+|||.++++++...+.. ++.++||++|++.|+.|+.+.+..++..
T Consensus 13 ~~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~~---~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 13 TIEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLHK---KGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred cCCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHHh---CCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 34689999998887764 489999999999999988888776632 4568999999999999999999988643
Q ss_pred hCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhh
Q 013826 83 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 162 (436)
Q Consensus 83 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h 162 (436)
.+..+..++|+.+..... ....+.+|+|+||+.+.+.+.... +.+.+++++|+||||
T Consensus 85 ~~~~v~~~~g~~~~~~r~----------------------~~~~~~~iiv~T~~~l~~~l~~~~-~~~~~~~liVvDEaH 141 (773)
T PRK13766 85 PEEKIVVFTGEVSPEKRA----------------------ELWEKAKVIVATPQVIENDLIAGR-ISLEDVSLLIFDEAH 141 (773)
T ss_pred CCceEEEEeCCCCHHHHH----------------------HHHhCCCEEEECHHHHHHHHHcCC-CChhhCcEEEEECCc
Confidence 345677778876544321 122345899999999988776533 668899999999999
Q ss_pred HHhhHhHhhhHHHHHhh-cc-------cccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccC
Q 013826 163 RLLREAYQAWLPTVLQL-TR-------SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234 (436)
Q Consensus 163 ~~~~~~~~~~~~~i~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~ 234 (436)
++........+...+.. .. ++++.............+..............+.... ...........+++.
T Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~-~~~~v~~~~v~l~~~ 220 (773)
T PRK13766 142 RAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYV-HKVKIEWVRVELPEE 220 (773)
T ss_pred cccccccHHHHHHHHHhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhh-ccceeEEEEeCCcHH
Confidence 98654333333222211 11 1111100000000000000000000000000000000 000001111111100
Q ss_pred chh---------------hhccccCCcee--ee--------------cCCcccc--------------------------
Q 013826 235 PNK---------------LAQLDLHHPLF--LT--------------TGETRYK-------------------------- 257 (436)
Q Consensus 235 ~~~---------------~~~~~~~~~~~--~~--------------~~~~~~~-------------------------- 257 (436)
... +.......+.. .. .......
T Consensus 221 ~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 300 (773)
T PRK13766 221 LKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGV 300 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 000 00000000000 00 0000000
Q ss_pred -------------------C------C------ccccceeeeccCcCcHHHHHHHHHh----cCCCcEEEEcCCchhHHH
Q 013826 258 -------------------L------P------ERLESYKLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHR 302 (436)
Q Consensus 258 -------------------~------~------~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~~lvf~~~~~~~~~ 302 (436)
. . ..+...........|...+.++++. ..++++||||++.+.++.
T Consensus 301 ~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~ 380 (773)
T PRK13766 301 EALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEK 380 (773)
T ss_pred HHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHH
Confidence 0 0 0000000011223455666666644 467899999999999999
Q ss_pred HHHHHhhhcccceeEEEeccc--------cchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHH
Q 013826 303 LCTLLNHFGELRIKIKEYSGL--------QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 374 (436)
Q Consensus 303 ~~~~l~~~~~~~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~ 374 (436)
+.+.|...+ +.+..++|. ++..+|..++++|++|+.++||+|+++++|+|+|.+++||+|++++++..|
T Consensus 381 L~~~L~~~~---~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~ 457 (773)
T PRK13766 381 IVDLLEKEG---IKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRS 457 (773)
T ss_pred HHHHHHhCC---CceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHH
Confidence 999997665 666677765 888899999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccCCCCceEEEEecch
Q 013826 375 IHRAGRTARAGQLGRCFTLLHKD 397 (436)
Q Consensus 375 ~Q~~GR~~R~~~~g~~~~~~~~~ 397 (436)
+||+||+||.+ .|.+++++...
T Consensus 458 iQR~GR~gR~~-~~~v~~l~~~~ 479 (773)
T PRK13766 458 IQRKGRTGRQE-EGRVVVLIAKG 479 (773)
T ss_pred HHHhcccCcCC-CCEEEEEEeCC
Confidence 99999999986 58888887653
No 67
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=2.3e-33 Score=262.87 Aligned_cols=339 Identities=22% Similarity=0.246 Sum_probs=211.7
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.||+||.+|++.+...+.+++.+++++|||+|||.+++..+... ..++|||+|++.|+.||++.+...+...
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-------~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~- 107 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-------KRSTLVLVPTKELLDQWAEALKKFLLLN- 107 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-------cCCEEEEECcHHHHHHHHHHHHHhcCCc-
Confidence 59999999999998877667889999999999999876655432 2249999999999999998777765431
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHH
Q 013826 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 164 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~ 164 (436)
..++.+.|+...... ..|.|+|++.+..... ...+....+++||+|||||+
T Consensus 108 ~~~g~~~~~~~~~~~----------------------------~~i~vat~qtl~~~~~-l~~~~~~~~~liI~DE~Hh~ 158 (442)
T COG1061 108 DEIGIYGGGEKELEP----------------------------AKVTVATVQTLARRQL-LDEFLGNEFGLIIFDEVHHL 158 (442)
T ss_pred cccceecCceeccCC----------------------------CcEEEEEhHHHhhhhh-hhhhcccccCEEEEEccccC
Confidence 233444444321110 1699999999977420 01133447999999999999
Q ss_pred hhHhHhhhHHHHHhhc----ccccccccc-cccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhh
Q 013826 165 LREAYQAWLPTVLQLT----RSDNENRFS-DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239 (436)
Q Consensus 165 ~~~~~~~~~~~i~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~ 239 (436)
.+..+....+.+.... -++++.... .....+....+ ......+....+........+.+....+.........
T Consensus 159 ~a~~~~~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g--~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~ 236 (442)
T COG1061 159 PAPSYRRILELLSAAYPRLGLTATPEREDGGRIGDLFDLIG--PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREY 236 (442)
T ss_pred CcHHHHHHHHhhhcccceeeeccCceeecCCchhHHHHhcC--CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHh
Confidence 9887776665554433 233322111 11111111111 1111111122222222222222222111111000000
Q ss_pred ccccC-CceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhc-CCCcEEEEcCCchhHHHHHHHHhhhcccceeE
Q 013826 240 QLDLH-HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKI 317 (436)
Q Consensus 240 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~ 317 (436)
..... .......... ................+...+..++..+ .+.+++||+.+..++..++..+...+ . +
T Consensus 237 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~---~-~ 309 (442)
T COG1061 237 AKESARFRELLRARGT---LRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPG---I-V 309 (442)
T ss_pred hhhhhhhhhhhhhhhh---hhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCC---c-e
Confidence 00000 0000000000 0000000111222334455555666555 47799999999999999999998665 3 7
Q ss_pred EEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhccc-CCCCce
Q 013826 318 KEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR-AGQLGR 389 (436)
Q Consensus 318 ~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R-~~~~g~ 389 (436)
..+.+..+..+|..+++.|+.|+.++|+++.++.+|+|+|+++++|+..+..|...|.|++||+.| ...++.
T Consensus 310 ~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 310 EAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 889999999999999999999999999999999999999999999999999999999999999999 333443
No 68
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.1e-32 Score=264.81 Aligned_cols=369 Identities=18% Similarity=0.176 Sum_probs=229.5
Q ss_pred ccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCc
Q 013826 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85 (436)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 85 (436)
++|+|.+++..+.. ++..++.++||+|||+++.+|++.... .+..++|++|++.|+.|+++++..++..+|+
T Consensus 69 lrpydVQlig~l~l----~~G~Iaem~TGeGKTLta~Lpa~l~aL----~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 69 MFPYDVQVLGAIVL----HQGNIAEMKTGEGKTLTATMPLYLNAL----TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred CCccHHHHHHHHHh----cCCceeEecCCcchHHHHHHHHHHHhh----cCCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 56666666554432 445799999999999999999765443 3446999999999999999999999999999
Q ss_pred eEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhH-HHHhhcC-----CCcccCCccEEEEe
Q 013826 86 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHLCYLVVD 159 (436)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~l~~~-----~~~~~~~~~~iIiD 159 (436)
.+....++....... .+. +....+++|+++||+.| .+.+..+ ....++.+.++|+|
T Consensus 141 sv~~~~~~s~~~~~~-----------------~~~-rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVD 202 (762)
T TIGR03714 141 TVSLGVVDDPDEEYD-----------------ANE-KRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVD 202 (762)
T ss_pred cEEEEECCCCccccC-----------------HHH-HHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEe
Confidence 988876652211110 000 11224679999999999 5555332 12347789999999
Q ss_pred hhhHHhhHh----------------HhhhHHHHHhhccccc---------------------------cccc-ccccccc
Q 013826 160 ETDRLLREA----------------YQAWLPTVLQLTRSDN---------------------------ENRF-SDASTFL 195 (436)
Q Consensus 160 E~h~~~~~~----------------~~~~~~~i~~~~~~~~---------------------------~~~~-~~~~~~~ 195 (436)
|||.++-+. .+.....+...+.... ++.+ ..+....
T Consensus 203 EaDsILiDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~ 282 (762)
T TIGR03714 203 EVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELV 282 (762)
T ss_pred cHhhHhhccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHH
Confidence 999974422 1222223333222110 0000 0000000
Q ss_pred -----------------------------cccccccccccccc-----cccccCCCC---------------ccc--eee
Q 013826 196 -----------------------------PSAFGSLKTIRRCG-----VERGFKDKP---------------YPR--LVK 224 (436)
Q Consensus 196 -----------------------------~~~~~~~~~~~~~~-----~~~~~~~~~---------------~~~--~~~ 224 (436)
....+....-++++ ..+...... +++ .+.
T Consensus 283 ~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl 362 (762)
T TIGR03714 283 RHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKL 362 (762)
T ss_pred HHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchh
Confidence 00000000000000 000000000 000 123
Q ss_pred eeeccccccCchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHh--cCCCcEEEEcCCchhHHH
Q 013826 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHR 302 (436)
Q Consensus 225 i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~~~~~~~~ 302 (436)
..+|+|......++... ++..++......+..... ..-.+......|...+...++. ..+.++||||++++.++.
T Consensus 363 ~GmTGTa~~~~~Ef~~i--Y~l~v~~IPt~kp~~r~d-~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ 439 (762)
T TIGR03714 363 SGMTGTGKVAEKEFIET--YSLSVVKIPTNKPIIRID-YPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEI 439 (762)
T ss_pred cccCCCChhHHHHHHHH--hCCCEEEcCCCCCeeeee-CCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHH
Confidence 46677754333333332 222222222221111111 1122334445577777776655 357789999999999999
Q ss_pred HHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCC---------CCCeEEEecCCCChhH
Q 013826 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE---------GVNNVVNYDKPAYIKT 373 (436)
Q Consensus 303 ~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~---------~~~~vi~~~~~~s~~~ 373 (436)
++..|.+.+ +++..+|+.+...++..+..++..| .|+|+|+++++|+|+| ++.+|+.++.|.....
T Consensus 440 ls~~L~~~g---i~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid 514 (762)
T TIGR03714 440 YSELLLREG---IPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD 514 (762)
T ss_pred HHHHHHHCC---CCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH
Confidence 999999887 8899999999988887777777666 7999999999999999 8999999999987666
Q ss_pred HHHHhhhcccCCCCceEEEEecchhH-------HHHHHHHHHh
Q 013826 374 YIHRAGRTARAGQLGRCFTLLHKDEV-------KRFKKLLQKA 409 (436)
Q Consensus 374 ~~Q~~GR~~R~~~~g~~~~~~~~~~~-------~~~~~~~~~~ 409 (436)
.|++||+||.|++|.+++|++..|. +++.++++.+
T Consensus 515 -~qr~GRtGRqG~~G~s~~~is~eD~l~~~~~~~~~~~~~~~~ 556 (762)
T TIGR03714 515 -LQLRGRSGRQGDPGSSQFFVSLEDDLIKRWSPSWLKKYYKKY 556 (762)
T ss_pred -HHhhhcccCCCCceeEEEEEccchhhhhhcchHHHHHHHHHc
Confidence 9999999999999999999987653 3445555554
No 69
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1e-32 Score=287.78 Aligned_cols=353 Identities=18% Similarity=0.235 Sum_probs=232.2
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+|| +|++.|.+++..++. ++++++.||||+|||..++++++... .++.+++|++||++|+.|+.+.+..++
T Consensus 76 ~G~-~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~----~~g~~aLVl~PTreLa~Qi~~~l~~l~ 146 (1638)
T PRK14701 76 TGF-EFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLA----LKGKKCYIILPTTLLVKQTVEKIESFC 146 (1638)
T ss_pred hCC-CCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHH----hcCCeEEEEECHHHHHHHHHHHHHHHH
Confidence 588 699999998887775 89999999999999985554444321 145589999999999999999999988
Q ss_pred hhh--CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhcc-CCcEEEeCchhHHHHhhcCCCcccCCccEEE
Q 013826 81 PAV--GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLV 157 (436)
Q Consensus 81 ~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iI 157 (436)
... ++.+..++|+.+...+. +.+..+.. .++|+|+||+.|.+.+.. ....+++++|
T Consensus 147 ~~~~~~v~v~~~~g~~s~~e~~------------------~~~~~l~~g~~dILV~TPgrL~~~~~~---l~~~~i~~iV 205 (1638)
T PRK14701 147 EKANLDVRLVYYHSNLRKKEKE------------------EFLERIENGDFDILVTTAQFLARNFPE---MKHLKFDFIF 205 (1638)
T ss_pred hhcCCceeEEEEeCCCCHHHHH------------------HHHHHHhcCCCCEEEECCchhHHhHHH---HhhCCCCEEE
Confidence 765 45667788887755442 22223333 479999999999876553 1226799999
Q ss_pred EehhhHHhhH-----------hHhhhHHH-HHhhcccccccccccccccccccccccccccccccccccCCCCccceeee
Q 013826 158 VDETDRLLRE-----------AYQAWLPT-VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 225 (436)
Q Consensus 158 iDE~h~~~~~-----------~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 225 (436)
+||||+++.+ +|...+.. ++..+....... .......... +.......+......+
T Consensus 206 VDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~-------~~~~~~~~~~-----l~~~~~~~~~~~~~ll 273 (1638)
T PRK14701 206 VDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGN-------IEDAMEKREI-----LNKEIEKIGNKIGCLI 273 (1638)
T ss_pred EECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccc-------cchhhhhhhh-----hhhhhhhcCCCccEEE
Confidence 9999999763 23322221 111111000000 0000000000 0000000011122357
Q ss_pred eeccccccCchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchh---HHH
Q 013826 226 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES---THR 302 (436)
Q Consensus 226 ~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~---~~~ 302 (436)
++|||..+..... ..+.++..+..+.....+.. +...........+ ..+..+++.. +.++||||++.+. |+.
T Consensus 274 ~~SAT~~~r~~~~--~l~~~~l~f~v~~~~~~lr~-i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~ 348 (1638)
T PRK14701 274 VASATGKAKGDRV--KLYRELLGFEVGSGRSALRN-IVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEE 348 (1638)
T ss_pred EEecCCCchhHHH--HHhhcCeEEEecCCCCCCCC-cEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHH
Confidence 7899997532111 12345555544443332222 2223222222223 4666777665 5689999999775 589
Q ss_pred HHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEec----CCcccccCCCC-CCeEEEecCCC---ChhHH
Q 013826 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS----DAMTRGMDVEG-VNNVVNYDKPA---YIKTY 374 (436)
Q Consensus 303 ~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t----~~~~~Gidi~~-~~~vi~~~~~~---s~~~~ 374 (436)
+++.|.+.+ +.+..+|++ |...+++|++|+++|||+| +.+++|+|+|+ ++.||+++.|. +...|
T Consensus 349 la~~L~~~G---i~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~ 420 (1638)
T PRK14701 349 IEKYLLEDG---FKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLE 420 (1638)
T ss_pred HHHHHHHCC---CeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhc
Confidence 999999877 899999984 8889999999999999999 58899999998 99999999998 76655
Q ss_pred HHH-------------hhhcccCCCCceEEEEecchhHHHHHHHHHH
Q 013826 375 IHR-------------AGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 408 (436)
Q Consensus 375 ~Q~-------------~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~ 408 (436)
.|. .||++|.|..+.++..+...+...++.+++.
T Consensus 421 ~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 421 DPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred ccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHHhcc
Confidence 554 4999999988777766666666666666544
No 70
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=5e-32 Score=251.57 Aligned_cols=318 Identities=19% Similarity=0.229 Sum_probs=235.8
Q ss_pred CCCcccchhHHHHHhhhCCCCCCC--cEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 2 GISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~--~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
+| +|+..|.++++++...+.+.. +=++++..|||||.+++++++..+.++ ..+..++||.-|+.|.++.+.++
T Consensus 260 PF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G----~Q~ALMAPTEILA~QH~~~~~~~ 334 (677)
T COG1200 260 PF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG----YQAALMAPTEILAEQHYESLRKW 334 (677)
T ss_pred CC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC----CeeEEeccHHHHHHHHHHHHHHH
Confidence 45 589999999999998776653 458999999999999999999888765 37999999999999999999999
Q ss_pred hhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhcc-CCcEEEeCchhHHHHhhcCCCcccCCccEEEE
Q 013826 80 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVV 158 (436)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIi 158 (436)
++..|+.+..++|......+. +....+.+ ..+|+|+|+.-+.+ ...+.++.++|+
T Consensus 335 l~~~~i~V~lLtG~~kgk~r~------------------~~l~~l~~G~~~ivVGTHALiQd------~V~F~~LgLVIi 390 (677)
T COG1200 335 LEPLGIRVALLTGSLKGKARK------------------EILEQLASGEIDIVVGTHALIQD------KVEFHNLGLVII 390 (677)
T ss_pred hhhcCCeEEEeecccchhHHH------------------HHHHHHhCCCCCEEEEcchhhhc------ceeecceeEEEE
Confidence 999999999999998866552 22233333 47999999655522 356889999999
Q ss_pred ehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhh
Q 013826 159 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238 (436)
Q Consensus 159 DE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~ 238 (436)
||-|++.-.. -..+...... ....+++||||-+....+
T Consensus 391 DEQHRFGV~Q----R~~L~~KG~~--------------------------------------~Ph~LvMTATPIPRTLAl 428 (677)
T COG1200 391 DEQHRFGVHQ----RLALREKGEQ--------------------------------------NPHVLVMTATPIPRTLAL 428 (677)
T ss_pred eccccccHHH----HHHHHHhCCC--------------------------------------CCcEEEEeCCCchHHHHH
Confidence 9999984221 1111111110 125799999998877666
Q ss_pred hccccCCceeee-cCCccccCCccccceeeeccCcCcHHHHHHHHH-hc-CCCcEEEEcCCchhH--------HHHHHHH
Q 013826 239 AQLDLHHPLFLT-TGETRYKLPERLESYKLICESKLKPLYLVALLQ-SL-GEEKCIVFTSSVEST--------HRLCTLL 307 (436)
Q Consensus 239 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~-~~~~~lvf~~~~~~~--------~~~~~~l 307 (436)
......+-..+. ....+ .++..+. .. ..+.+.+++.++ .. .+.++.|.||-+++. +..++.|
T Consensus 429 t~fgDldvS~IdElP~GR----kpI~T~~--i~-~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L 501 (677)
T COG1200 429 TAFGDLDVSIIDELPPGR----KPITTVV--IP-HERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEEL 501 (677)
T ss_pred HHhccccchhhccCCCCC----CceEEEE--ec-cccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHH
Confidence 655444432221 11111 1111111 12 233333333332 22 577899999987655 4556666
Q ss_pred hhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCC-CChhHHHHHhhhcccCCC
Q 013826 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP-AYIKTYIHRAGRTARAGQ 386 (436)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~~~ 386 (436)
+. ...+..++.+||.|...++++++.+|++|+.+|||+|.+++.|||+|+++++|+.+.. -..+++.|..||+||.+.
T Consensus 502 ~~-~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~ 580 (677)
T COG1200 502 KS-FLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDL 580 (677)
T ss_pred HH-HcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCc
Confidence 63 3455789999999999999999999999999999999999999999999999998865 468899999999999888
Q ss_pred CceEEEEecchh
Q 013826 387 LGRCFTLLHKDE 398 (436)
Q Consensus 387 ~g~~~~~~~~~~ 398 (436)
.+.|+.++.+..
T Consensus 581 qSyC~Ll~~~~~ 592 (677)
T COG1200 581 QSYCVLLYKPPL 592 (677)
T ss_pred ceEEEEEeCCCC
Confidence 899999997754
No 71
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.6e-32 Score=264.02 Aligned_cols=369 Identities=21% Similarity=0.278 Sum_probs=256.6
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhc-------CCccEEEEcCCHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-------RCLRALVVLPTRDLALQVK 73 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~-------~~~~~lil~P~~~l~~q~~ 73 (436)
+|.+.+.+.|...+..+.. ...++++|||||+|||.++++.+++.+..+.. ...+++|++|.++|+++|.
T Consensus 305 ~g~~sLNrIQS~v~daAl~---~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~V 381 (1674)
T KOG0951|consen 305 FGKQSLNRIQSKVYDAALR---GDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMV 381 (1674)
T ss_pred ccchhhhHHHHHHHHHHhc---CcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHH
Confidence 4677889999888776654 46899999999999999999999998876532 3458999999999999999
Q ss_pred HHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCc-ccCC
Q 013826 74 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF-TLEH 152 (436)
Q Consensus 74 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~-~~~~ 152 (436)
..|.+.+...|+.|.-.+|+........ .+.+|+++||++.=-.=+...+. -.+-
T Consensus 382 gsfSkRla~~GI~V~ElTgD~~l~~~qi------------------------eeTqVIV~TPEK~DiITRk~gdraY~ql 437 (1674)
T KOG0951|consen 382 GSFSKRLAPLGITVLELTGDSQLGKEQI------------------------EETQVIVTTPEKWDIITRKSGDRAYEQL 437 (1674)
T ss_pred HHHHhhccccCcEEEEecccccchhhhh------------------------hcceeEEeccchhhhhhcccCchhHHHH
Confidence 9999999999999999999987544322 23499999999973222222221 2345
Q ss_pred ccEEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccc
Q 013826 153 LCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 232 (436)
Q Consensus 153 ~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~ 232 (436)
++++|+||.|.+ .+.-+..++.+..+...... ......+.+.+|||++
T Consensus 438 vrLlIIDEIHLL-hDdRGpvLESIVaRt~r~se-------------------------------s~~e~~RlVGLSATLP 485 (1674)
T KOG0951|consen 438 VRLLIIDEIHLL-HDDRGPVLESIVARTFRRSE-------------------------------STEEGSRLVGLSATLP 485 (1674)
T ss_pred HHHHhhhhhhhc-ccccchHHHHHHHHHHHHhh-------------------------------hcccCceeeeecccCC
Confidence 789999999955 44455666666655432110 0002346799999998
Q ss_pred cCchhhh--ccccCCceeeecCCccccCCccccceeeeccCcCcH------HHHHHHHHhcCCCcEEEEcCCchhHHHHH
Q 013826 233 QDPNKLA--QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP------LYLVALLQSLGEEKCIVFTSSVESTHRLC 304 (436)
Q Consensus 233 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~l~~~~~~~~lvf~~~~~~~~~~~ 304 (436)
+...... .........+....+ +.+-..+...+......+. .....+++....+++|||+++++++.+.|
T Consensus 486 Ny~DV~~Fl~v~~~glf~fd~syR--pvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA 563 (1674)
T KOG0951|consen 486 NYEDVASFLRVDPEGLFYFDSSYR--PVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTA 563 (1674)
T ss_pred chhhhHHHhccCcccccccCcccC--cCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHH
Confidence 7654433 333322222222222 2222222233333333332 23334455556689999999999999999
Q ss_pred HHHhhhcc----------------------------------cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCc
Q 013826 305 TLLNHFGE----------------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 350 (436)
Q Consensus 305 ~~l~~~~~----------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~ 350 (436)
+.+++... ..++++++|.+|++.+|....+.|+.|.++|+|+|..+
T Consensus 564 ~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatl 643 (1674)
T KOG0951|consen 564 RAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATL 643 (1674)
T ss_pred HHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhh
Confidence 88873211 33589999999999999999999999999999999999
Q ss_pred ccccCCCCCCeEEE----ecC------CCChhHHHHHhhhcccCCCC--ceEEEEecchhHHHHHHHHHHhcCCCCCCCC
Q 013826 351 TRGMDVEGVNNVVN----YDK------PAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVKRFKKLLQKADNDSCPIHS 418 (436)
Q Consensus 351 ~~Gidi~~~~~vi~----~~~------~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (436)
++|+|+|.-+++|- |++ +.++.+..||.||+||.+.+ |..++.....+...+.+++ ++.+|+++
T Consensus 644 awgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~m----n~qLpies 719 (1674)
T KOG0951|consen 644 AWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLM----NQQLPIES 719 (1674)
T ss_pred hhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhh----hhcCCChH
Confidence 99999998666552 333 24689999999999998765 6677665555555555544 45544433
Q ss_pred -CChhhhhhhhhccccC
Q 013826 419 -IPSSLIESLRPVYKSG 434 (436)
Q Consensus 419 -~~~~~~~~~~~~~~~~ 434 (436)
+-+++...||.+...|
T Consensus 720 q~~~rl~d~lnaeiv~G 736 (1674)
T KOG0951|consen 720 QFVSRLADCLNAEIVLG 736 (1674)
T ss_pred HHHHHhhhhhhhhhhcc
Confidence 5566666666666555
No 72
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=9.3e-32 Score=255.60 Aligned_cols=355 Identities=20% Similarity=0.208 Sum_probs=237.3
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013826 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
|+ .|++.|..++..++. |+ |..+.||+|||+++.++++.... .+..++|++||+.|+.|.++++..++.
T Consensus 101 g~-~p~~VQ~~~~~~ll~----G~--Iae~~TGeGKTla~~lp~~~~al----~G~~v~VvTptreLA~qdae~~~~l~~ 169 (656)
T PRK12898 101 GQ-RHFDVQLMGGLALLS----GR--LAEMQTGEGKTLTATLPAGTAAL----AGLPVHVITVNDYLAERDAELMRPLYE 169 (656)
T ss_pred CC-CCChHHHHHHHHHhC----CC--eeeeeCCCCcHHHHHHHHHHHhh----cCCeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 44 588999888776653 55 99999999999999999887654 345899999999999999999999999
Q ss_pred hhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhH-HHHhhcCCC-------------
Q 013826 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG------------- 147 (436)
Q Consensus 82 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~l~~~~~------------- 147 (436)
..|+.+.++.|+.+.... ....+++|+++|...| ++.|..+..
T Consensus 170 ~lGlsv~~i~gg~~~~~r-----------------------~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~ 226 (656)
T PRK12898 170 ALGLTVGCVVEDQSPDER-----------------------RAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALE 226 (656)
T ss_pred hcCCEEEEEeCCCCHHHH-----------------------HHHcCCCEEEECCCchhhhhccccccccccccchhhhhh
Confidence 999999999998753322 2334679999999887 444443311
Q ss_pred -----------cccCCccEEEEehhhHHhhH------------------hHhhhHHHHHhhcccccccc-----------
Q 013826 148 -----------FTLEHLCYLVVDETDRLLRE------------------AYQAWLPTVLQLTRSDNENR----------- 187 (436)
Q Consensus 148 -----------~~~~~~~~iIiDE~h~~~~~------------------~~~~~~~~i~~~~~~~~~~~----------- 187 (436)
.....+.+.||||++.++-+ .++.+...+...+.....-.
T Consensus 227 ~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt 306 (656)
T PRK12898 227 SLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELT 306 (656)
T ss_pred hhccccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEc
Confidence 12456889999999974221 12222222222221110000
Q ss_pred --------------cccccccc--cc------------------------------cccccccccccc-----cccccCC
Q 013826 188 --------------FSDASTFL--PS------------------------------AFGSLKTIRRCG-----VERGFKD 216 (436)
Q Consensus 188 --------------~~~~~~~~--~~------------------------------~~~~~~~~~~~~-----~~~~~~~ 216 (436)
...|.... .. ..+....-++++ ..+....
T Consensus 307 ~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~ 386 (656)
T PRK12898 307 EAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEG 386 (656)
T ss_pred HHHHHHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcC
Confidence 00000000 00 000000000000 0000000
Q ss_pred CC---------------ccc--eeeeeeccccccCchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHH
Q 013826 217 KP---------------YPR--LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 279 (436)
Q Consensus 217 ~~---------------~~~--~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 279 (436)
.. +++ .+...+|+|......++......++..++...... .......+......|...+.
T Consensus 387 v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~---r~~~~~~v~~t~~~K~~aL~ 463 (656)
T PRK12898 387 CELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQ---RRHLPDEVFLTAAAKWAAVA 463 (656)
T ss_pred CCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCcc---ceecCCEEEeCHHHHHHHHH
Confidence 00 000 02447889987666666666666766665444331 11222334445556777777
Q ss_pred HHHHhc--CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCC
Q 013826 280 ALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 357 (436)
Q Consensus 280 ~~l~~~--~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~ 357 (436)
..+... .+.++||||+|++.++.+++.|.+.+ +++..+|+.++. |+..+..|..+...|+|+|+++++|+|++
T Consensus 464 ~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~g---i~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~ 538 (656)
T PRK12898 464 ARVRELHAQGRPVLVGTRSVAASERLSALLREAG---LPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIK 538 (656)
T ss_pred HHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC---CCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcC
Confidence 777653 25689999999999999999999877 899999998765 45555566656668999999999999999
Q ss_pred ---CCC-----eEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchh
Q 013826 358 ---GVN-----NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398 (436)
Q Consensus 358 ---~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 398 (436)
++. +||+++.|.|...|.|++||+||.|.+|.++++++..|
T Consensus 539 l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 539 LEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred CccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 555 89999999999999999999999999999999998765
No 73
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=4e-32 Score=267.55 Aligned_cols=332 Identities=22% Similarity=0.325 Sum_probs=251.2
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
||...+|+.|.+++..++ .|+++++.+|||.||++.|.+|++- .++..|+|.|..+|...+...+...
T Consensus 260 Fg~~~FR~~Q~eaI~~~l----~Gkd~fvlmpTG~GKSLCYQlPA~l-------~~gitvVISPL~SLm~DQv~~L~~~- 327 (941)
T KOG0351|consen 260 FGHKGFRPNQLEAINATL----SGKDCFVLMPTGGGKSLCYQLPALL-------LGGVTVVISPLISLMQDQVTHLSKK- 327 (941)
T ss_pred hccccCChhHHHHHHHHH----cCCceEEEeecCCceeeEeeccccc-------cCCceEEeccHHHHHHHHHHhhhhc-
Confidence 689999999999888655 4999999999999999999998873 3347999999999998777666443
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhcc---CCcEEEeCchhHHHHhhcC-CCcccCC---c
Q 013826 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS---AVDILVATPGRLMDHINAT-RGFTLEH---L 153 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Iii~T~~~l~~~l~~~-~~~~~~~---~ 153 (436)
++....+.++....... .+++.+.. ..+|++.||+++...-... ....+.. +
T Consensus 328 ---~I~a~~L~s~q~~~~~~------------------~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~l 386 (941)
T KOG0351|consen 328 ---GIPACFLSSIQTAAERL------------------AILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLL 386 (941)
T ss_pred ---CcceeeccccccHHHHH------------------HHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCee
Confidence 78888888888765442 22223322 3689999999985532211 1122334 7
Q ss_pred cEEEEehhhHHhhHh--HhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeecccc
Q 013826 154 CYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 231 (436)
Q Consensus 154 ~~iIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~ 231 (436)
.++||||||+...++ |+.-...+...... ++....+.+|||.
T Consensus 387 al~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~------------------------------------~~~vP~iALTATA 430 (941)
T KOG0351|consen 387 ALFVIDEAHCVSQWGHDFRPSYKRLGLLRIR------------------------------------FPGVPFIALTATA 430 (941)
T ss_pred EEEEecHHHHhhhhcccccHHHHHHHHHHhh------------------------------------CCCCCeEEeehhc
Confidence 899999999987664 22222222222111 1224578899888
Q ss_pred ccCc--hhhhccccCCceeeecCCccccCCccccceeeeccC--cCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHH
Q 013826 232 TQDP--NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES--KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 307 (436)
Q Consensus 232 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l 307 (436)
+..+ ..+..+.+.++.++.....+..+ .|.+.... ......+......+....+||||.++..|+.++..|
T Consensus 431 T~~v~~DIi~~L~l~~~~~~~~sfnR~NL-----~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L 505 (941)
T KOG0351|consen 431 TERVREDVIRSLGLRNPELFKSSFNRPNL-----KYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVL 505 (941)
T ss_pred cHHHHHHHHHHhCCCCcceecccCCCCCc-----eEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHH
Confidence 6654 34555777777766544433222 23333332 223333444444567889999999999999999999
Q ss_pred hhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCC
Q 013826 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 387 (436)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~ 387 (436)
+..+ +....||++|...+|..+-++|-.++++|+++|=+++.|||-|+++.||++..|+|...|.|-+||+||.|..
T Consensus 506 ~~~~---~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~ 582 (941)
T KOG0351|consen 506 RSLG---KSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLP 582 (941)
T ss_pred HHhc---hhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCc
Confidence 9888 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecchhHHHHHHHHHHh
Q 013826 388 GRCFTLLHKDEVKRFKKLLQKA 409 (436)
Q Consensus 388 g~~~~~~~~~~~~~~~~~~~~~ 409 (436)
..|++|+...|...+...+..-
T Consensus 583 s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 583 SSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred ceeEEecchhHHHHHHHHHHcc
Confidence 9999999999988888877654
No 74
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=9.7e-32 Score=260.97 Aligned_cols=354 Identities=18% Similarity=0.208 Sum_probs=226.9
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.|++.|..+.-.+ .+..|..+.||+|||+++.+|++.... .+..+++++||+.|+.|.++++..++...|
T Consensus 78 ~p~~vQl~~~~~l------~~G~Iaem~TGeGKTL~a~lp~~l~al----~G~~v~VvTpt~~LA~qd~e~~~~l~~~lG 147 (790)
T PRK09200 78 RPYDVQLIGALVL------HEGNIAEMQTGEGKTLTATMPLYLNAL----EGKGVHLITVNDYLAKRDAEEMGQVYEFLG 147 (790)
T ss_pred CCchHHHHhHHHH------cCCceeeecCCCcchHHHHHHHHHHHH----cCCCeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 4666675554322 233399999999999999998875444 345799999999999999999999999999
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhH-HHHhhcCC-----CcccCCccEEEE
Q 013826 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLCYLVV 158 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~l~~~~-----~~~~~~~~~iIi 158 (436)
+.+.++.|+.+..... .....++|+++||..+ ++.+..+. ...++.+.++|+
T Consensus 148 l~v~~i~g~~~~~~~r----------------------~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~Iv 205 (790)
T PRK09200 148 LTVGLNFSDIDDASEK----------------------KAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAII 205 (790)
T ss_pred CeEEEEeCCCCcHHHH----------------------HHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEE
Confidence 9999999988732221 1223479999999988 45444322 134678999999
Q ss_pred ehhhHHhhHh----------------HhhhHHHHHhhccccc---------------------------ccccccccccc
Q 013826 159 DETDRLLREA----------------YQAWLPTVLQLTRSDN---------------------------ENRFSDASTFL 195 (436)
Q Consensus 159 DE~h~~~~~~----------------~~~~~~~i~~~~~~~~---------------------------~~~~~~~~~~~ 195 (436)
||+|.++-+. .+.....+...+.... ++.+......+
T Consensus 206 DEaDsiLiDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~ 285 (790)
T PRK09200 206 DEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVL 285 (790)
T ss_pred eccccceeccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHH
Confidence 9999853221 2222223333221110 00000000000
Q ss_pred c----cccccccc-------ccccc---cccccCCCCccc--------------------------------------ee
Q 013826 196 P----SAFGSLKT-------IRRCG---VERGFKDKPYPR--------------------------------------LV 223 (436)
Q Consensus 196 ~----~~~~~~~~-------~~~~~---~~~~~~~~~~~~--------------------------------------~~ 223 (436)
. .++.+... +-..+ +...+.....+. .+
T Consensus 286 ~~~i~~Al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~k 365 (790)
T PRK09200 286 YRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPK 365 (790)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHH
Confidence 0 00000000 00000 000000000000 01
Q ss_pred eeeeccccccCchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHh--cCCCcEEEEcCCchhHH
Q 013826 224 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTH 301 (436)
Q Consensus 224 ~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~~~~~~~ 301 (436)
...+|+|......++... ++..++......+....+.. ..+......|...+...+.. ..+.++||||+|++.++
T Consensus 366 l~GmTGTa~t~~~e~~~~--Y~l~v~~IPt~kp~~r~d~~-~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se 442 (790)
T PRK09200 366 LSGMTGTAKTEEKEFFEV--YNMEVVQIPTNRPIIRIDYP-DKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSE 442 (790)
T ss_pred HhccCCCChHHHHHHHHH--hCCcEEECCCCCCcccccCC-CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 346677764333333322 22222222222221211111 22233445577777776654 25778999999999999
Q ss_pred HHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCC---CCCC-----eEEEecCCCChhH
Q 013826 302 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV---EGVN-----NVVNYDKPAYIKT 373 (436)
Q Consensus 302 ~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi---~~~~-----~vi~~~~~~s~~~ 373 (436)
.++..|.+.+ +++..+|+.+...++..+..++..| +|+|||+++++|+|+ |++. +||+++.|.+...
T Consensus 443 ~l~~~L~~~g---i~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~ 517 (790)
T PRK09200 443 TFSKLLDEAG---IPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRV 517 (790)
T ss_pred HHHHHHHHCC---CCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHH
Confidence 9999999877 8999999999888887777777666 899999999999999 6888 9999999999999
Q ss_pred HHHHhhhcccCCCCceEEEEecchh
Q 013826 374 YIHRAGRTARAGQLGRCFTLLHKDE 398 (436)
Q Consensus 374 ~~Q~~GR~~R~~~~g~~~~~~~~~~ 398 (436)
|.|++||+||.|.+|.+++|++..|
T Consensus 518 y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 518 DLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred HHHhhccccCCCCCeeEEEEEcchH
Confidence 9999999999999999999998755
No 75
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=8e-31 Score=268.59 Aligned_cols=305 Identities=20% Similarity=0.284 Sum_probs=195.6
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.|+++|..++..++. |+++++.||||+|||..+ +++...+.. .+.+++|++||++|+.|+.+.+..++...+
T Consensus 78 ~p~~iQ~~~i~~il~----G~d~vi~ApTGsGKT~f~-l~~~~~l~~---~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~ 149 (1171)
T TIGR01054 78 EPWSIQKMWAKRVLR----GDSFAIIAPTGVGKTTFG-LAMSLFLAK---KGKRCYIILPTTLLVIQVAEKISSLAEKAG 149 (1171)
T ss_pred CCcHHHHHHHHHHhC----CCeEEEECCCCCCHHHHH-HHHHHHHHh---cCCeEEEEeCHHHHHHHHHHHHHHHHHhcC
Confidence 699999888877664 899999999999999744 444444332 456899999999999999999999987766
Q ss_pred ceEE---EeccCcchhHHHHHhhccccccccccCCchhHHHhhc-cCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013826 85 LSVG---LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 85 ~~v~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
+.+. .++|+.+...+.. .+..+. .+++|+|+||+.|...+.. +.. +++++|+||
T Consensus 150 i~~~~i~~~~Gg~~~~e~~~------------------~~~~l~~~~~dIlV~Tp~rL~~~~~~---l~~-~~~~iVvDE 207 (1171)
T TIGR01054 150 VGTVNIGAYHSRLPTKEKKE------------------FMERIENGDFDILITTTMFLSKNYDE---LGP-KFDFIFVDD 207 (1171)
T ss_pred CceeeeeeecCCCCHHHHHH------------------HHHHHhcCCCCEEEECHHHHHHHHHH---hcC-CCCEEEEeC
Confidence 5543 4677776554321 112222 3479999999999887665 112 799999999
Q ss_pred hhHHhhHh-----------Hhh-hHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccce--eeee
Q 013826 161 TDRLLREA-----------YQA-WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL--VKMV 226 (436)
Q Consensus 161 ~h~~~~~~-----------~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~ 226 (436)
||++++.+ |.. .++.++...+..... ....-.... .......+ ... +.++
T Consensus 208 aD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~-------~~~~~~~~~--------~~~~~~~~-~~~q~~li~ 271 (1171)
T TIGR01054 208 VDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKL-------YRALHAKKR--------LELLEAIP-GKKRGCLIV 271 (1171)
T ss_pred hHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhcccc-------chHHHHHHH--------HHHHHhhh-hccCcEEEE
Confidence 99998732 222 122322221110000 000000000 00000000 111 3567
Q ss_pred eccccccCchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCc---hhHHHH
Q 013826 227 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV---ESTHRL 303 (436)
Q Consensus 227 ~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~---~~~~~~ 303 (436)
+|||..+.... ...+.++..+..+...... ..+........ .+...+.++++.. +.++||||++. +.|+.+
T Consensus 272 ~SAT~~p~~~~--~~l~r~ll~~~v~~~~~~~-r~I~~~~~~~~--~~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l 345 (1171)
T TIGR01054 272 SSATGRPRGKR--AKLFRELLGFEVGGGSDTL-RNVVDVYVEDE--DLKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEI 345 (1171)
T ss_pred EeCCCCccccH--HHHcccccceEecCccccc-cceEEEEEecc--cHHHHHHHHHHHc-CCCEEEEEeccccHHHHHHH
Confidence 89995433211 1112233333332222222 22222222211 2244566666654 46899999999 999999
Q ss_pred HHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEec----CCcccccCCCC-CCeEEEecCC
Q 013826 304 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS----DAMTRGMDVEG-VNNVVNYDKP 368 (436)
Q Consensus 304 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t----~~~~~Gidi~~-~~~vi~~~~~ 368 (436)
++.|++.+ +.+..+||+++. ..++.|++|+++|||+| +.+++|+|+|+ ++.||+++.|
T Consensus 346 ~~~L~~~g---~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 346 AEFLENHG---VKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred HHHHHhCC---ceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 99999876 899999999863 68999999999999995 89999999999 8999997766
No 76
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=3.3e-31 Score=253.14 Aligned_cols=354 Identities=19% Similarity=0.179 Sum_probs=226.8
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.|++.|...... -.+..|..++||+|||+++.++++-.... +..+.+++||..|+.|.++++..++...|
T Consensus 56 ~p~~vQlig~~~------l~~G~Iaem~TGeGKTLva~lpa~l~aL~----G~~V~VvTpt~~LA~qdae~~~~l~~~LG 125 (745)
T TIGR00963 56 RPFDVQLIGGIA------LHKGKIAEMKTGEGKTLTATLPAYLNALT----GKGVHVVTVNDYLAQRDAEWMGQVYRFLG 125 (745)
T ss_pred CccchHHhhhhh------hcCCceeeecCCCccHHHHHHHHHHHHHh----CCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 466666544322 13444999999999999999988533333 33699999999999999999999999999
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhH-HHHhhcCC-----CcccCCccEEEE
Q 013826 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLCYLVV 158 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~l~~~~-----~~~~~~~~~iIi 158 (436)
+.+.++.|+.+...+. ....++|+++||..| ++++..+. ...++.+.++|+
T Consensus 126 Lsv~~i~g~~~~~~r~-----------------------~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aII 182 (745)
T TIGR00963 126 LSVGLILSGMSPEERR-----------------------EAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAII 182 (745)
T ss_pred CeEEEEeCCCCHHHHH-----------------------HhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEe
Confidence 9999999987754332 122469999999999 88877652 245788999999
Q ss_pred ehhhHHhhHhHhh----------------hHHHHHhhcccc---------------------------cccccccccccc
Q 013826 159 DETDRLLREAYQA----------------WLPTVLQLTRSD---------------------------NENRFSDASTFL 195 (436)
Q Consensus 159 DE~h~~~~~~~~~----------------~~~~i~~~~~~~---------------------------~~~~~~~~~~~~ 195 (436)
||+|.++-+.... ....+.+.+... ..+.+......+
T Consensus 183 DEaDs~LIDeaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~ 262 (745)
T TIGR00963 183 DEVDSILIDEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPL 262 (745)
T ss_pred ecHHHHhHHhhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHH
Confidence 9999976532111 111122111100 000000000000
Q ss_pred ----ccccccc-------ccccccc---cccccCCCCccc--------------------------------------ee
Q 013826 196 ----PSAFGSL-------KTIRRCG---VERGFKDKPYPR--------------------------------------LV 223 (436)
Q Consensus 196 ----~~~~~~~-------~~~~~~~---~~~~~~~~~~~~--------------------------------------~~ 223 (436)
..++.+. -.+-..+ +...+.....+. .+
T Consensus 263 ~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~k 342 (745)
T TIGR00963 263 IHYINNALKAKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEK 342 (745)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCch
Confidence 0000000 0000000 000000000000 01
Q ss_pred eeeeccccccCchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHH-h-cCCCcEEEEcCCchhHH
Q 013826 224 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-S-LGEEKCIVFTSSVESTH 301 (436)
Q Consensus 224 ~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~-~~~~~~lvf~~~~~~~~ 301 (436)
...+|+|......++......+...+++...... .. ....+......|...+.+.+. . ..+.++||||++++.++
T Consensus 343 l~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~R--~d-~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se 419 (745)
T TIGR00963 343 LSGMTGTAKTEEEEFEKIYNLEVVVVPTNRPVIR--KD-LSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSE 419 (745)
T ss_pred hhccCCCcHHHHHHHHHHhCCCEEEeCCCCCeee--ee-CCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 3466777644333333333333333332222111 11 111222333445555555442 2 25778999999999999
Q ss_pred HHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCC-------CCeEEEecCCCChhHH
Q 013826 302 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG-------VNNVVNYDKPAYIKTY 374 (436)
Q Consensus 302 ~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~-------~~~vi~~~~~~s~~~~ 374 (436)
.+++.|.+.+ ++...+|+. ..+|+..+.+|..+...|+|||++.++|+|++. .-+||.++.|.|...+
T Consensus 420 ~ls~~L~~~g---i~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~ 494 (745)
T TIGR00963 420 LLSNLLKERG---IPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRID 494 (745)
T ss_pred HHHHHHHHcC---CCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHH
Confidence 9999999887 888889987 668999999999999999999999999999997 4489999999999999
Q ss_pred HHHhhhcccCCCCceEEEEecchhH
Q 013826 375 IHRAGRTARAGQLGRCFTLLHKDEV 399 (436)
Q Consensus 375 ~Q~~GR~~R~~~~g~~~~~~~~~~~ 399 (436)
.|+.||+||.|.+|.+.+|++..|.
T Consensus 495 ~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 495 NQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred HHHhccccCCCCCcceEEEEeccHH
Confidence 9999999999999999999987653
No 77
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-32 Score=223.55 Aligned_cols=303 Identities=26% Similarity=0.396 Sum_probs=244.9
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+||++|+..|.+++..++- |-++++.|..|.|||.++.++.++.+.... ....++++|.|++|+-|+..++.++.
T Consensus 60 cgfehpsevqhecipqail----gmdvlcqaksgmgktavfvl~tlqqiepv~-g~vsvlvmchtrelafqi~~ey~rfs 134 (387)
T KOG0329|consen 60 CGFEHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQIEPVD-GQVSVLVMCHTRELAFQISKEYERFS 134 (387)
T ss_pred ccCCCchHhhhhhhhHHhh----cchhheecccCCCceeeeehhhhhhcCCCC-CeEEEEEEeccHHHHHHHHHHHHHHH
Confidence 5999999999999888775 889999999999999999888888775432 23469999999999999999998887
Q ss_pred hhh-CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEe
Q 013826 81 PAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 159 (436)
Q Consensus 81 ~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiD 159 (436)
+.+ ++.+.+..|+..+.....-+ .+-|.|+|+||+++..+.+.. .+++++....|+|
T Consensus 135 kymP~vkvaVFfGG~~Ikkdee~l---------------------k~~PhivVgTPGrilALvr~k-~l~lk~vkhFvlD 192 (387)
T KOG0329|consen 135 KYMPSVKVSVFFGGLFIKKDEELL---------------------KNCPHIVVGTPGRILALVRNR-SLNLKNVKHFVLD 192 (387)
T ss_pred hhCCCceEEEEEcceeccccHHHH---------------------hCCCeEEEcCcHHHHHHHHhc-cCchhhcceeehh
Confidence 776 68899999998876653322 224599999999999988764 4889999999999
Q ss_pred hhhHHhhH-hHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhh
Q 013826 160 ETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238 (436)
Q Consensus 160 E~h~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~ 238 (436)
||+.++.. .++.-++.++++.+. .-|.+.+|||++..+...
T Consensus 193 Ecdkmle~lDMrRDvQEifr~tp~--------------------------------------~KQvmmfsatlskeiRpv 234 (387)
T KOG0329|consen 193 ECDKMLEQLDMRRDVQEIFRMTPH--------------------------------------EKQVMMFSATLSKEIRPV 234 (387)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcc--------------------------------------cceeeeeeeecchhhHHH
Confidence 99998876 567777888876632 236789999999999999
Q ss_pred hccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEE
Q 013826 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIK 318 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (436)
...++.+|..+-........-...+.+........|...+..++...+-.+++||+.|+.. |
T Consensus 235 C~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~R-------l----------- 296 (387)
T KOG0329|consen 235 CHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQR-------L----------- 296 (387)
T ss_pred HHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhh-------h-----------
Confidence 9999998865544443333444556667777778888888888888888899999988765 1
Q ss_pred EeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchh
Q 013826 319 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398 (436)
Q Consensus 319 ~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 398 (436)
. | +.+ +|+|+.+++|+|+..++.+++|+.|.+...|.++.||+||.|.+|.+++|++..+
T Consensus 297 ---------------~-f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~ 356 (387)
T KOG0329|consen 297 ---------------S-F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 356 (387)
T ss_pred ---------------h-h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchh
Confidence 0 2 224 8999999999999999999999999999999999999999999999999998754
Q ss_pred -HHHHHHHH
Q 013826 399 -VKRFKKLL 406 (436)
Q Consensus 399 -~~~~~~~~ 406 (436)
...+....
T Consensus 357 da~iLn~vq 365 (387)
T KOG0329|consen 357 DAKILNPVQ 365 (387)
T ss_pred hHHHhchhh
Confidence 34444443
No 78
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=8.1e-31 Score=240.00 Aligned_cols=312 Identities=18% Similarity=0.172 Sum_probs=192.6
Q ss_pred hhHHHHHhhhCCCCCC-CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh----
Q 013826 9 VQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV---- 83 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~-~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~---- 83 (436)
||.++++.+.+ .+ ..+++.+|||+|||.+++++++. ...+++|++|+++|+.|+.+.+..++..+
T Consensus 1 hQ~~~~~~~~~---~~~~~~~i~apTGsGKT~~~~~~~l~-------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~ 70 (357)
T TIGR03158 1 HQVATFEALQS---KDADIIFNTAPTGAGKTLAWLTPLLH-------GENDTIALYPTNALIEDQTEAIKEFVDVFKPER 70 (357)
T ss_pred CHHHHHHHHHc---CCCCEEEEECCCCCCHHHHHHHHHHH-------cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCC
Confidence 69999998876 23 35789999999999998888773 23469999999999999999999887533
Q ss_pred CceEEEeccCcchhHHHHHhhccccccccccCCchhH----HH-hhccCCcEEEeCchhHHHHhhcCC---Cc----ccC
Q 013826 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV----LQ-ELQSAVDILVATPGRLMDHINATR---GF----TLE 151 (436)
Q Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~Iii~T~~~l~~~l~~~~---~~----~~~ 151 (436)
+..+..+.|....+.+...- ... +.. ..+.. .. .....+.|+++||+.|..++.... .. .+.
T Consensus 71 ~~~v~~~~g~~~~d~~~~~~-~~~----~~~-~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~ 144 (357)
T TIGR03158 71 DVNLLHVSKATLKDIKEYAN-DKV----GSS-KGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYT 144 (357)
T ss_pred CceEEEecCCchHHHHHhhh-hhc----ccC-ccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhc
Confidence 55666777764332111000 000 000 01111 11 123468999999999977665421 11 257
Q ss_pred CccEEEEehhhHHhhHhHhhhH--HHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeecc
Q 013826 152 HLCYLVVDETDRLLREAYQAWL--PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 229 (436)
Q Consensus 152 ~~~~iIiDE~h~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sa 229 (436)
+++++|+||+|.+..+.....+ .......+.. ....+.+++||
T Consensus 145 ~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~-----------------------------------~~~~~~i~lSA 189 (357)
T TIGR03158 145 KFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFF-----------------------------------ECRRKFVFLSA 189 (357)
T ss_pred CCCEEEEecccccCcccchhhhhhhHHHHHHHhh-----------------------------------hcCCcEEEEec
Confidence 8999999999987543221111 0111111100 01236899999
Q ss_pred ccccCchhhhccc--cCCceeeecCC--ccc-------cCC--------ccccceeeeccCcCcHHHHH---H----HHH
Q 013826 230 TLTQDPNKLAQLD--LHHPLFLTTGE--TRY-------KLP--------ERLESYKLICESKLKPLYLV---A----LLQ 283 (436)
Q Consensus 230 t~~~~~~~~~~~~--~~~~~~~~~~~--~~~-------~~~--------~~~~~~~~~~~~~~~~~~l~---~----~l~ 283 (436)
|+++......... +..+.....+. ... ..+ ..+...... ....+...+. + .++
T Consensus 190 T~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~ 268 (357)
T TIGR03158 190 TPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFR 268 (357)
T ss_pred CCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHh
Confidence 9976544433321 23333222121 000 000 011111111 2222222222 2 222
Q ss_pred hcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEE
Q 013826 284 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 363 (436)
Q Consensus 284 ~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi 363 (436)
...++++||||++++.++.+++.|++.+ .+..+..+||.++..+|.+. ++.++||||+++++|+|+|.. .||
T Consensus 269 ~~~~~k~LIf~nt~~~~~~l~~~L~~~~-~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi 340 (357)
T TIGR03158 269 QLPGERGAIILDSLDEVNRLSDLLQQQG-LGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI 340 (357)
T ss_pred ccCCCeEEEEECCHHHHHHHHHHHhhhC-CCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE
Confidence 2356799999999999999999998753 22567889999999887643 478999999999999999976 555
Q ss_pred EecCCCChhHHHHHhhhcc
Q 013826 364 NYDKPAYIKTYIHRAGRTA 382 (436)
Q Consensus 364 ~~~~~~s~~~~~Q~~GR~~ 382 (436)
++ |.+...|+||+||+|
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 44 788999999999986
No 79
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.98 E-value=1.7e-30 Score=219.74 Aligned_cols=314 Identities=20% Similarity=0.189 Sum_probs=225.4
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
+|+++|..+-+.++..+.+.++.+++|.||+|||-...-++...+. .+.++.+.+|..+.+.+++..++..+. +
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~----~G~~vciASPRvDVclEl~~Rlk~aF~--~ 170 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN----QGGRVCIASPRVDVCLELYPRLKQAFS--N 170 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh----cCCeEEEecCcccchHHHHHHHHHhhc--c
Confidence 5899999999999998988999999999999999875554444443 455899999999999999999998876 4
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHH
Q 013826 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 164 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~ 164 (436)
..+..++|++..... ..++|+|.++|+++-. .||++||||++.+
T Consensus 171 ~~I~~Lyg~S~~~fr----------------------------~plvVaTtHQLlrFk~--------aFD~liIDEVDAF 214 (441)
T COG4098 171 CDIDLLYGDSDSYFR----------------------------APLVVATTHQLLRFKQ--------AFDLLIIDEVDAF 214 (441)
T ss_pred CCeeeEecCCchhcc----------------------------ccEEEEehHHHHHHHh--------hccEEEEeccccc
Confidence 667778888753322 2799999988877554 4889999999986
Q ss_pred hhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhccccC
Q 013826 165 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244 (436)
Q Consensus 165 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~ 244 (436)
.=. ....+....+..+. ..-..+.+|||++.....-....-.
T Consensus 215 P~~-~d~~L~~Av~~ark-------------------------------------~~g~~IylTATp~k~l~r~~~~g~~ 256 (441)
T COG4098 215 PFS-DDQSLQYAVKKARK-------------------------------------KEGATIYLTATPTKKLERKILKGNL 256 (441)
T ss_pred ccc-CCHHHHHHHHHhhc-------------------------------------ccCceEEEecCChHHHHHHhhhCCe
Confidence 321 11112222222111 1224689999998777666655555
Q ss_pred CceeeecCCccccCCccccceeeecc----CcCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhhcccceeEE
Q 013826 245 HPLFLTTGETRYKLPERLESYKLICE----SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIK 318 (436)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (436)
.+..++.+....+++.+.-.+..... ...-...+...++.+ .+.+++||+++++..++++..|++.- ....++
T Consensus 257 ~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~-~~~~i~ 335 (441)
T COG4098 257 RILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKL-PKETIA 335 (441)
T ss_pred eEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhC-Ccccee
Confidence 55555555555555443322222111 111233566666655 35789999999999999999996432 223456
Q ss_pred EeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCC--CChhHHHHHhhhcccCCC--CceEEEEe
Q 013826 319 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP--AYIKTYIHRAGRTARAGQ--LGRCFTLL 394 (436)
Q Consensus 319 ~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~--~s~~~~~Q~~GR~~R~~~--~g~~~~~~ 394 (436)
.+|+.... |.+..++|++|+..+||+|.++++|+.+|++++.|+-... .+.+.++|..||+||.-. .|.++.|-
T Consensus 336 ~Vhs~d~~--R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 336 SVHSEDQH--RKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred eeeccCcc--HHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 77776544 8899999999999999999999999999999988876544 568899999999999543 38777776
Q ss_pred cchhHHH
Q 013826 395 HKDEVKR 401 (436)
Q Consensus 395 ~~~~~~~ 401 (436)
......+
T Consensus 414 ~G~skaM 420 (441)
T COG4098 414 YGKSKAM 420 (441)
T ss_pred ccchHHH
Confidence 6544333
No 80
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.98 E-value=3.2e-30 Score=256.57 Aligned_cols=135 Identities=21% Similarity=0.222 Sum_probs=116.3
Q ss_pred cCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHh-hhcccceeEEEeccccchHHHHHHHHHHhcC--CeeEEEecC
Q 013826 272 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAFREG--KIQVLVSSD 348 (436)
Q Consensus 272 ~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vlv~t~ 348 (436)
..|.+.+.++++.....|+||||+++..+..+++.|+ ..+ +.+..+||+|+..+|+.+++.|+++ ..+|||||.
T Consensus 478 d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~G---i~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTd 554 (956)
T PRK04914 478 DPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREG---IRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSE 554 (956)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccC---eeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEech
Confidence 4567778888888788899999999999999999995 445 8899999999999999999999984 599999999
Q ss_pred CcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHHHh
Q 013826 349 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 409 (436)
Q Consensus 349 ~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 409 (436)
+.++|+|++.+++||+|+.|+++..|.||+||++|.|+++.+.++.........+.+.+.+
T Consensus 555 vgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~ 615 (956)
T PRK04914 555 IGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWY 615 (956)
T ss_pred hhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887776554433333343333
No 81
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=6.8e-30 Score=250.50 Aligned_cols=328 Identities=18% Similarity=0.214 Sum_probs=251.5
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCC--cEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~--~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 78 (436)
|+| .-++-|..|++.+..-+.+++ +=++|+..|.|||-+|+-++...+..+ ..|.+++||.-|++|.+++|+.
T Consensus 591 FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G----KQVAvLVPTTlLA~QHy~tFke 665 (1139)
T COG1197 591 FPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG----KQVAVLVPTTLLAQQHYETFKE 665 (1139)
T ss_pred CCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC----CeEEEEcccHHhHHHHHHHHHH
Confidence 455 368889999999998887765 569999999999999988888777655 4899999999999999999999
Q ss_pred hhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhc-cCCcEEEeCchhHHHHhhcCCCcccCCccEEE
Q 013826 79 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLV 157 (436)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iI 157 (436)
.+.+.+++|..+..-.+...+. ++.+.+. ...+|+|+|+.-| . .+..+++++++|
T Consensus 666 RF~~fPV~I~~LSRF~s~kE~~------------------~il~~la~G~vDIvIGTHrLL----~--kdv~FkdLGLlI 721 (1139)
T COG1197 666 RFAGFPVRIEVLSRFRSAKEQK------------------EILKGLAEGKVDIVIGTHRLL----S--KDVKFKDLGLLI 721 (1139)
T ss_pred HhcCCCeeEEEecccCCHHHHH------------------HHHHHHhcCCccEEEechHhh----C--CCcEEecCCeEE
Confidence 9999999999988777665552 2333333 3479999995444 3 346789999999
Q ss_pred EehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchh
Q 013826 158 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 237 (436)
Q Consensus 158 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 237 (436)
|||-|++. -...+.+..+. ..+.++.+||||-+....
T Consensus 722 IDEEqRFG-Vk~KEkLK~Lr------------------------------------------~~VDvLTLSATPIPRTL~ 758 (1139)
T COG1197 722 IDEEQRFG-VKHKEKLKELR------------------------------------------ANVDVLTLSATPIPRTLN 758 (1139)
T ss_pred EechhhcC-ccHHHHHHHHh------------------------------------------ccCcEEEeeCCCCcchHH
Confidence 99999983 22233333333 234578999999999888
Q ss_pred hhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHh-cCCCcEEEEcCCchhHHHHHHHHhhhccccee
Q 013826 238 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 316 (436)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~ 316 (436)
+.-.++++.-++...... .-+++.+...... ...-.++++. .+++++-..+|.++..+.+++.|+++- +...
T Consensus 759 Msm~GiRdlSvI~TPP~~---R~pV~T~V~~~d~---~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LV-PEar 831 (1139)
T COG1197 759 MSLSGIRDLSVIATPPED---RLPVKTFVSEYDD---LLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELV-PEAR 831 (1139)
T ss_pred HHHhcchhhhhccCCCCC---CcceEEEEecCCh---HHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhC-CceE
Confidence 888888876555433211 1111222221111 1111222332 357899999999999999999999884 4477
Q ss_pred EEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCC-CChhHHHHHhhhcccCCCCceEEEEec
Q 013826 317 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP-AYIKTYIHRAGRTARAGQLGRCFTLLH 395 (436)
Q Consensus 317 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 395 (436)
+++.||-|+..+-++++..|.+|+.+|||||.+++.|+|+|+++++|+-+.. ...+++.|..||+||....+.||.++.
T Consensus 832 I~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p 911 (1139)
T COG1197 832 IAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYP 911 (1139)
T ss_pred EEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeec
Confidence 9999999999999999999999999999999999999999999999988765 469999999999999988899999987
Q ss_pred ch------hHHHHHHHHH
Q 013826 396 KD------EVKRFKKLLQ 407 (436)
Q Consensus 396 ~~------~~~~~~~~~~ 407 (436)
+. ..++++.+.+
T Consensus 912 ~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 912 PQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred CccccCHHHHHHHHHHHh
Confidence 53 4466666644
No 82
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=2e-29 Score=247.81 Aligned_cols=322 Identities=20% Similarity=0.229 Sum_probs=212.0
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.|+++|.++++.+...+ .++++++.++||+|||.+++.++.+.+.. +.++|+++|+++|+.|+.+.+++.+ |
T Consensus 144 ~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~----g~~vLvLvPt~~L~~Q~~~~l~~~f---g 215 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ----GKQALVLVPEIALTPQMLARFRARF---G 215 (679)
T ss_pred CCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHHHHHHHHh---C
Confidence 58999999999987654 45789999999999999988777666543 4479999999999999999998765 6
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhh-ccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhH
Q 013826 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 163 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~ 163 (436)
..+..++|+.+..... +.|..+ ....+|+|+|+..++ ..+++++++|+||+|.
T Consensus 216 ~~v~~~~s~~s~~~r~------------------~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~ 269 (679)
T PRK05580 216 APVAVLHSGLSDGERL------------------DEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHD 269 (679)
T ss_pred CCEEEEECCCCHHHHH------------------HHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCc
Confidence 7888889887765542 223333 234799999997763 3477899999999996
Q ss_pred HhhHhH---hhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc
Q 013826 164 LLREAY---QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 240 (436)
Q Consensus 164 ~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~ 240 (436)
..-... ..+...+..... .....+.++.|||++........
T Consensus 270 ~s~~~~~~p~y~~r~va~~ra------------------------------------~~~~~~~il~SATps~~s~~~~~ 313 (679)
T PRK05580 270 SSYKQQEGPRYHARDLAVVRA------------------------------------KLENIPVVLGSATPSLESLANAQ 313 (679)
T ss_pred cccccCcCCCCcHHHHHHHHh------------------------------------hccCCCEEEEcCCCCHHHHHHHh
Confidence 532110 011111111000 01234688999998654443332
Q ss_pred cccCCceeeecCCccccCCccccceeeec-----cCcCcHHHHHHHHHhc--CCCcEEEEcCCc----------------
Q 013826 241 LDLHHPLFLTTGETRYKLPERLESYKLIC-----ESKLKPLYLVALLQSL--GEEKCIVFTSSV---------------- 297 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~l~~~--~~~~~lvf~~~~---------------- 297 (436)
.+.........+......+. +....... ........+.+.+++. .++++|||+|.+
T Consensus 314 ~g~~~~~~l~~r~~~~~~p~-v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~ 392 (679)
T PRK05580 314 QGRYRLLRLTKRAGGARLPE-VEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAE 392 (679)
T ss_pred ccceeEEEeccccccCCCCe-EEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccC
Confidence 22221111111111111111 01111000 0011223344434332 355799987751
Q ss_pred --------------------------------------------hhHHHHHHHHhhhcccceeEEEeccccc--hHHHHH
Q 013826 298 --------------------------------------------ESTHRLCTLLNHFGELRIKIKEYSGLQR--QSVRSK 331 (436)
Q Consensus 298 --------------------------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~r~~ 331 (436)
..++++++.|++. ..+.++..+|+++. ..+++.
T Consensus 393 C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~-fp~~~v~~~~~d~~~~~~~~~~ 471 (679)
T PRK05580 393 CPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAEL-FPEARILRIDRDTTRRKGALEQ 471 (679)
T ss_pred CCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHh-CCCCcEEEEeccccccchhHHH
Confidence 1456777777765 22467888999886 457889
Q ss_pred HHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCC------------ChhHHHHHhhhcccCCCCceEEEEecchh
Q 013826 332 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------------YIKTYIHRAGRTARAGQLGRCFTLLHKDE 398 (436)
Q Consensus 332 ~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 398 (436)
+++.|++|+.+|||+|++++.|+|+|+++.|++++.+. ....|.|++||+||.+..|.+++.....+
T Consensus 472 ~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 472 LLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred HHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 99999999999999999999999999999997776542 13578999999999988899998765443
No 83
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.97 E-value=2.9e-30 Score=262.57 Aligned_cols=323 Identities=19% Similarity=0.192 Sum_probs=194.5
Q ss_pred cccchhHHHHHhhhCCCCCC-CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh
Q 013826 5 SLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~-~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 83 (436)
.+|+||.+|+..+...+..+ +++++++|||||||++++..+...+... ...++|||+|+.+|+.|+.+.|..+....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~--~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAK--RFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcC--ccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 58999999999888766544 6799999999999998655444433332 34589999999999999999998863221
Q ss_pred CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCC----CcccCCccEEEEe
Q 013826 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR----GFTLEHLCYLVVD 159 (436)
Q Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~----~~~~~~~~~iIiD 159 (436)
+.......+....... .......|+|+|++++.+.+.... ...+..+++||+|
T Consensus 491 ~~~~~~i~~i~~L~~~-----------------------~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiD 547 (1123)
T PRK11448 491 DQTFASIYDIKGLEDK-----------------------FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVD 547 (1123)
T ss_pred ccchhhhhchhhhhhh-----------------------cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEE
Confidence 1111000100000000 011235899999999987653221 1356789999999
Q ss_pred hhhHHhhH---------h------HhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceee
Q 013826 160 ETDRLLRE---------A------YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 224 (436)
Q Consensus 160 E~h~~~~~---------~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (436)
|||+..+. . +......++..+. -..
T Consensus 548 EaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd----------------------------------------A~~ 587 (1123)
T PRK11448 548 EAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFD----------------------------------------AVK 587 (1123)
T ss_pred CCCCCCccccccccchhccchhhhHHHHHHHHHhhcC----------------------------------------ccE
Confidence 99985310 0 1122222332211 124
Q ss_pred eeeccccccCchhhhc--------------cccC---CceeeecCCccc----cCCccccceee-------e-cc-----
Q 013826 225 MVLSATLTQDPNKLAQ--------------LDLH---HPLFLTTGETRY----KLPERLESYKL-------I-CE----- 270 (436)
Q Consensus 225 i~~sat~~~~~~~~~~--------------~~~~---~~~~~~~~~~~~----~~~~~~~~~~~-------~-~~----- 270 (436)
+.+||||......... ..+. .|+.+....... ...+....+.. . .+
T Consensus 588 IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~ 667 (1123)
T PRK11448 588 IGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDF 667 (1123)
T ss_pred EEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHhh
Confidence 5666666533221111 0010 111111100000 00000000000 0 00
Q ss_pred ----------CcCcHHH----HHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhc------ccceeEEEeccccchHHHH
Q 013826 271 ----------SKLKPLY----LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG------ELRIKIKEYSGLQRQSVRS 330 (436)
Q Consensus 271 ----------~~~~~~~----l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~r~ 330 (436)
....... +.+.+....++|+||||.++++|+.+++.|.+.. .....+..++|+++ ++.
T Consensus 668 ~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~ 745 (1123)
T PRK11448 668 EVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPD 745 (1123)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chH
Confidence 0000011 1122222245799999999999999999987641 11224556788775 467
Q ss_pred HHHHHHhcCCe-eEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCC---CceEEEEe
Q 013826 331 KTLKAFREGKI-QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ---LGRCFTLL 394 (436)
Q Consensus 331 ~~~~~f~~g~~-~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~---~g~~~~~~ 394 (436)
.+++.|+++.. .|+|+++++.+|+|+|.+.+||++.++.|...|.|++||+.|... +..++++-
T Consensus 746 ~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 746 QLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred HHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 89999999876 689999999999999999999999999999999999999999643 34444443
No 84
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=1.3e-30 Score=226.36 Aligned_cols=333 Identities=20% Similarity=0.268 Sum_probs=227.7
Q ss_pred CCCCcc-cchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 1 MGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 1 ~~~~~~-~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
||++.+ ++.|..|...+.. .++++.+++|||+||++.+.+|++- .+...|+++|..+|...+.+.+.++
T Consensus 15 FGh~kFKs~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQLPaL~-------~~gITIV~SPLiALIkDQiDHL~~L 84 (641)
T KOG0352|consen 15 FGHKKFKSRLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQLPALV-------HGGITIVISPLIALIKDQIDHLKRL 84 (641)
T ss_pred hCchhhcChHHHHHHHHHHh---ccCcEEEeccCCCchhhhhhchHHH-------hCCeEEEehHHHHHHHHHHHHHHhc
Confidence 455444 5678888777664 5799999999999999999999873 3337999999999999888888776
Q ss_pred hhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHH-----HhhcCCCcccCCcc
Q 013826 80 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD-----HINATRGFTLEHLC 154 (436)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~-----~l~~~~~~~~~~~~ 154 (436)
.+.+..+.+..+..+...-.. .+.....+..+++.||+.... +|.. ..+-..+.
T Consensus 85 ----KVp~~SLNSKlSt~ER~ri~~---------------DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~--L~~r~~L~ 143 (641)
T KOG0352|consen 85 ----KVPCESLNSKLSTVERSRIMG---------------DLAKEKPTIKMLYITPEGAATDGFQKLLNG--LANRDVLR 143 (641)
T ss_pred ----CCchhHhcchhhHHHHHHHHH---------------HHHhcCCceeEEEEchhhhhhhhHHHHHHH--Hhhhceee
Confidence 566666666665433311100 011222345899999987532 2221 01233578
Q ss_pred EEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccC
Q 013826 155 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234 (436)
Q Consensus 155 ~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~ 234 (436)
++++||||+...++.. .-.-.+.+ +.+ +...+....+.++||..+.
T Consensus 144 Y~vVDEAHCVSQWGHD-FRPDYL~L--------------------G~L-------------RS~~~~vpwvALTATA~~~ 189 (641)
T KOG0352|consen 144 YIVVDEAHCVSQWGHD-FRPDYLTL--------------------GSL-------------RSVCPGVPWVALTATANAK 189 (641)
T ss_pred eEEechhhhHhhhccc-cCcchhhh--------------------hhH-------------HhhCCCCceEEeecccChh
Confidence 9999999988655421 10000000 000 0111334578889888876
Q ss_pred chh--hhccccCCceee-ecCCccccCCccccceeeeccCc------CcHHHHHHHHH---------hcCCCcEEEEcCC
Q 013826 235 PNK--LAQLDLHHPLFL-TTGETRYKLPERLESYKLICESK------LKPLYLVALLQ---------SLGEEKCIVFTSS 296 (436)
Q Consensus 235 ~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~l~---------~~~~~~~lvf~~~ 296 (436)
+.+ ...+.+++|.-+ .....+.. ..|.....+. ...+.-...+- +.-.+..||||.+
T Consensus 190 VqEDi~~qL~L~~PVAiFkTP~FR~N-----LFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRT 264 (641)
T KOG0352|consen 190 VQEDIAFQLKLRNPVAIFKTPTFRDN-----LFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRT 264 (641)
T ss_pred HHHHHHHHHhhcCcHHhccCcchhhh-----hhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEecc
Confidence 644 445566666422 11111111 1111111110 01111111111 0123579999999
Q ss_pred chhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHH
Q 013826 297 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 376 (436)
Q Consensus 297 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q 376 (436)
+++|++++-.|...| ++...+|.++...||.++-++|-+++.+|+++|..++.|+|-|++++|++-+++.+..-|.|
T Consensus 265 R~~cEq~AI~l~~~G---i~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQ 341 (641)
T KOG0352|consen 265 RNECEQVAIMLEIAG---IPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQ 341 (641)
T ss_pred HHHHHHHHHHhhhcC---cchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHH
Confidence 999999999999777 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCceEEEEecchhHHHHHHHH
Q 013826 377 RAGRTARAGQLGRCFTLLHKDEVKRFKKLL 406 (436)
Q Consensus 377 ~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 406 (436)
-.||+||.|..+.|.+|+++.|...+.=++
T Consensus 342 ESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 342 ESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred hccccccCCCccceeeeecccchHHHHHHH
Confidence 999999999999999999998876655444
No 85
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=1.4e-28 Score=243.37 Aligned_cols=335 Identities=19% Similarity=0.188 Sum_probs=205.6
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh
Q 013826 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 83 (436)
..|||+|..+.+ +. .....+++.+|||+|||.+++.++......+ ...+++|..||.++++|+++.+..++...
T Consensus 285 ~~p~p~Q~~~~~-~~---~~pgl~ileApTGsGKTEAAL~~A~~l~~~~--~~~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 285 YQPRQLQTLVDA-LP---LQPGLTIIEAPTGSGKTEAALAYAWRLIDQG--LADSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred CCChHHHHHHHh-hc---cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCCeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 479999976632 21 2356789999999999999877666444333 33479999999999999999988755432
Q ss_pred --CceEEEeccCcchhHHHHHhhccccccccccCCch---hHHHh-hcc---CCcEEEeCchhHHHHhhcCCCcccCCc-
Q 013826 84 --GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE---DVLQE-LQS---AVDILVATPGRLMDHINATRGFTLEHL- 153 (436)
Q Consensus 84 --~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~---~~~Iii~T~~~l~~~l~~~~~~~~~~~- 153 (436)
...+...+|............... .......+.. ..|.. ... -.+|+|+|.++++......+...+..+
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRA-ATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhccc-ccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 346777777765433322211110 0000000000 01211 111 159999999999765554332223333
Q ss_pred ---cEEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccc
Q 013826 154 ---CYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230 (436)
Q Consensus 154 ---~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat 230 (436)
++|||||+|.+ +..+...+..+++.... .....+++|||
T Consensus 438 La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~-------------------------------------~g~~vIllSAT 479 (878)
T PRK09694 438 LGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQ-------------------------------------AGGSVILLSAT 479 (878)
T ss_pred hccCeEEEechhhC-CHHHHHHHHHHHHHHHh-------------------------------------cCCcEEEEeCC
Confidence 48999999987 44445556666654422 12247999999
Q ss_pred cccCchh-hhcccc-C--------CceeeecC---CccccCC------ccccceeeec---cC-cCcHHHHHHHHHh-cC
Q 013826 231 LTQDPNK-LAQLDL-H--------HPLFLTTG---ETRYKLP------ERLESYKLIC---ES-KLKPLYLVALLQS-LG 286 (436)
Q Consensus 231 ~~~~~~~-~~~~~~-~--------~~~~~~~~---~~~~~~~------~~~~~~~~~~---~~-~~~~~~l~~~l~~-~~ 286 (436)
++..... +....- . .|.+.... ....... .......+.. .. ......+..+++. ..
T Consensus 480 LP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~ 559 (878)
T PRK09694 480 LPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANA 559 (878)
T ss_pred CCHHHHHHHHHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhc
Confidence 9765432 211110 0 01110000 0000000 0000111100 11 1122333344433 34
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHH----HHHHHHH-hcCC---eeEEEecCCcccccCCCC
Q 013826 287 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR----SKTLKAF-REGK---IQVLVSSDAMTRGMDVEG 358 (436)
Q Consensus 287 ~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r----~~~~~~f-~~g~---~~vlv~t~~~~~Gidi~~ 358 (436)
+++++||||+++.|+.+++.|++.......+..+|+.+...+| .++++.| ++|+ ..|||+|++++.|+|+ +
T Consensus 560 g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d 638 (878)
T PRK09694 560 GAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-D 638 (878)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-C
Confidence 6789999999999999999999765445679999999999888 4567788 6665 4799999999999999 5
Q ss_pred CCeEEEecCCCChhHHHHHhhhcccCCC
Q 013826 359 VNNVVNYDKPAYIKTYIHRAGRTARAGQ 386 (436)
Q Consensus 359 ~~~vi~~~~~~s~~~~~Q~~GR~~R~~~ 386 (436)
.+++|....| +..++||+||++|.+.
T Consensus 639 ~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 639 FDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 7888887666 7899999999999875
No 86
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=1.4e-28 Score=233.39 Aligned_cols=298 Identities=20% Similarity=0.214 Sum_probs=189.7
Q ss_pred EEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccc
Q 013826 28 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 107 (436)
Q Consensus 28 i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 107 (436)
++.+|||+|||.+++..+.+.+.. +.++||++|+.+|+.|+++.+++.+ +..+..++++.+..+..
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~----g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~------- 66 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL----GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKL------- 66 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHH-------
Confidence 478999999999987766555543 4479999999999999999998765 56788888887655442
Q ss_pred cccccccCCchhHHHhhc-cCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHHhhHh---HhhhHHHHHhhcccc
Q 013826 108 KLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSD 183 (436)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~-~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~~~~~---~~~~~~~i~~~~~~~ 183 (436)
+.|..+. ...+|+|+|+..++ ..++++++|||||+|...-+. ...+...+......
T Consensus 67 -----------~~~~~~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~- 126 (505)
T TIGR00595 67 -----------QAWRKVKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK- 126 (505)
T ss_pred -----------HHHHHHHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-
Confidence 2233333 34699999987663 237789999999999763221 11111111111000
Q ss_pred cccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhccccCCceeeecCCccccCCcccc
Q 013826 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 263 (436)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (436)
....+.++.|||+..........+.........+......+. +.
T Consensus 127 -----------------------------------~~~~~vil~SATPsles~~~~~~g~~~~~~l~~r~~~~~~p~-v~ 170 (505)
T TIGR00595 127 -----------------------------------KFNCPVVLGSATPSLESYHNAKQKAYRLLVLTRRVSGRKPPE-VK 170 (505)
T ss_pred -----------------------------------hcCCCEEEEeCCCCHHHHHHHhcCCeEEeechhhhcCCCCCe-EE
Confidence 123467899999764433322221111111111111101110 01
Q ss_pred ceeeeccC--cCcHHHHHHHHH-hc-CCCcEEEEcCCchh----------------------------------------
Q 013826 264 SYKLICES--KLKPLYLVALLQ-SL-GEEKCIVFTSSVES---------------------------------------- 299 (436)
Q Consensus 264 ~~~~~~~~--~~~~~~l~~~l~-~~-~~~~~lvf~~~~~~---------------------------------------- 299 (436)
........ ......+.+.++ .. .++++|||+|++-.
T Consensus 171 vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~ 250 (505)
T TIGR00595 171 LIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQE 250 (505)
T ss_pred EEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcC
Confidence 11110000 111223333333 22 35689999765321
Q ss_pred --------------------HHHHHHHHhhhcccceeEEEeccccchHHH--HHHHHHHhcCCeeEEEecCCcccccCCC
Q 013826 300 --------------------THRLCTLLNHFGELRIKIKEYSGLQRQSVR--SKTLKAFREGKIQVLVSSDAMTRGMDVE 357 (436)
Q Consensus 300 --------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r--~~~~~~f~~g~~~vlv~t~~~~~Gidi~ 357 (436)
.+++.+.|++. .++.++..+|+++....+ +.+++.|++|+.+|||+|++++.|+|+|
T Consensus 251 ~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~-fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~ 329 (505)
T TIGR00595 251 PIPKTCPQCGSEDLVYKGYGTEQVEEELAKL-FPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFP 329 (505)
T ss_pred CCCCCCCCCCCCeeEeecccHHHHHHHHHhh-CCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCC
Confidence 47888888765 234788899999876655 8899999999999999999999999999
Q ss_pred CCCeEEEecCCC------------ChhHHHHHhhhcccCCCCceEEEEecc
Q 013826 358 GVNNVVNYDKPA------------YIKTYIHRAGRTARAGQLGRCFTLLHK 396 (436)
Q Consensus 358 ~~~~vi~~~~~~------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 396 (436)
+++.|++++... ....+.|++||+||.+..|.+++....
T Consensus 330 ~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~ 380 (505)
T TIGR00595 330 NVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYN 380 (505)
T ss_pred cccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCC
Confidence 999987665542 246789999999999888999976533
No 87
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.96 E-value=3.7e-28 Score=245.32 Aligned_cols=301 Identities=19% Similarity=0.240 Sum_probs=193.3
Q ss_pred hhCCCCCCCcEEEECCCCchHHHHhHHH-HHHHHHHhhcCCccEEEEcCCH----HHHHHHHHHHHHhhhhhCceEEEec
Q 013826 17 TIGPGLFERDLCINSPTGSGKTLSYALP-IVQTLSNRAVRCLRALVVLPTR----DLALQVKDVFAAIAPAVGLSVGLAV 91 (436)
Q Consensus 17 ~~~~~~~~~~~i~~~~tGsGKT~~~~~~-~~~~~~~~~~~~~~~lil~P~~----~l~~q~~~~~~~~~~~~~~~v~~~~ 91 (436)
++..+..++.++++++||||||.. +| ++... +......+++.-|.+ +++.++++++..-+ |-.++.-.
T Consensus 82 Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~--g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~l---G~~VGY~v 154 (1294)
T PRK11131 82 ILEAIRDHQVVIVAGETGSGKTTQ--LPKICLEL--GRGVKGLIGHTQPRRLAARTVANRIAEELETEL---GGCVGYKV 154 (1294)
T ss_pred HHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHc--CCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhh---cceeceee
Confidence 344444577788999999999984 34 22211 111122444455754 55556555555321 22222111
Q ss_pred cCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhH-HhhHhHh
Q 013826 92 GQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR-LLREAYQ 170 (436)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~-~~~~~~~ 170 (436)
.-. + ....+++|+++||+.|++.+.... .+++++++|+||||. .++..+.
T Consensus 155 rf~---~------------------------~~s~~t~I~v~TpG~LL~~l~~d~--~Ls~~~~IIIDEAHERsLn~DfL 205 (1294)
T PRK11131 155 RFN---D------------------------QVSDNTMVKLMTDGILLAEIQQDR--LLMQYDTIIIDEAHERSLNIDFI 205 (1294)
T ss_pred cCc---c------------------------ccCCCCCEEEEChHHHHHHHhcCC--ccccCcEEEecCccccccccchH
Confidence 000 0 112356999999999999887543 388999999999994 4444332
Q ss_pred hhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhccccCCceeee
Q 013826 171 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 250 (436)
Q Consensus 171 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~ 250 (436)
- ..+...+.. .+..+.+++|||+.. ..+...+...|.+..
T Consensus 206 L--g~Lk~lL~~------------------------------------rpdlKvILmSATid~--e~fs~~F~~apvI~V 245 (1294)
T PRK11131 206 L--GYLKELLPR------------------------------------RPDLKVIITSATIDP--ERFSRHFNNAPIIEV 245 (1294)
T ss_pred H--HHHHHhhhc------------------------------------CCCceEEEeeCCCCH--HHHHHHcCCCCEEEE
Confidence 1 112221111 023578999999953 344444444454332
Q ss_pred cCCccccCCccccceeeeccCc---CcHHHHHHHHH------hcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEec
Q 013826 251 TGETRYKLPERLESYKLICESK---LKPLYLVALLQ------SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 321 (436)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~------~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 321 (436)
. ....++. .+....... .+.+.+..++. ....+.+|||+++.++++.+++.|++.+.....+..+|
T Consensus 246 ~-Gr~~pVe----i~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLh 320 (1294)
T PRK11131 246 S-GRTYPVE----VRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLY 320 (1294)
T ss_pred c-Cccccce----EEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecc
Confidence 2 2222221 111111111 12233333221 23467899999999999999999998764455688899
Q ss_pred cccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecC------------------CCChhHHHHHhhhccc
Q 013826 322 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIKTYIHRAGRTAR 383 (436)
Q Consensus 322 ~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R 383 (436)
|+++..++..+++. .|..+|||+|++++.|+|+|+++.||.++. +.|..+|.||.||+||
T Consensus 321 g~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR 398 (1294)
T PRK11131 321 ARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGR 398 (1294)
T ss_pred cCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCC
Confidence 99999999988875 478999999999999999999999999752 2456789999999999
Q ss_pred CCCCceEEEEecchhHHH
Q 013826 384 AGQLGRCFTLLHKDEVKR 401 (436)
Q Consensus 384 ~~~~g~~~~~~~~~~~~~ 401 (436)
. .+|.||.+++..++..
T Consensus 399 ~-~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 399 V-SEGICIRLYSEDDFLS 415 (1294)
T ss_pred C-CCcEEEEeCCHHHHHh
Confidence 8 5999999999877654
No 88
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.96 E-value=2.7e-28 Score=209.21 Aligned_cols=319 Identities=19% Similarity=0.263 Sum_probs=229.3
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013826 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
-++.+||.|.+++...+ .++++++.+|||.||++.+.+|++- .+..+|+++|...|++.+.-.++.+
T Consensus 91 ~lekfrplq~~ain~~m----a~ed~~lil~tgggkslcyqlpal~-------adg~alvi~plislmedqil~lkql-- 157 (695)
T KOG0353|consen 91 HLEKFRPLQLAAINATM----AGEDAFLILPTGGGKSLCYQLPALC-------ADGFALVICPLISLMEDQILQLKQL-- 157 (695)
T ss_pred hHHhcChhHHHHhhhhh----ccCceEEEEeCCCccchhhhhhHHh-------cCCceEeechhHHHHHHHHHHHHHh--
Confidence 45789999988877665 4899999999999999999999884 4457999999999999888888887
Q ss_pred hhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHH------HhhcCCCcccCCccE
Q 013826 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD------HINATRGFTLEHLCY 155 (436)
Q Consensus 82 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~------~l~~~~~~~~~~~~~ 155 (436)
|+....+....+..+...- ++....-.++..+++.||+++.. .++. .+....+.+
T Consensus 158 --gi~as~lnansske~~k~v---------------~~~i~nkdse~kliyvtpekiaksk~~mnklek--a~~~~~~~~ 218 (695)
T KOG0353|consen 158 --GIDASMLNANSSKEEAKRV---------------EAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK--ALEAGFFKL 218 (695)
T ss_pred --CcchhhccCcccHHHHHHH---------------HHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH--HhhcceeEE
Confidence 6766666666654433210 11111122346899999998733 3332 134667899
Q ss_pred EEEehhhHHhhHhH--hh---hHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccc
Q 013826 156 LVVDETDRLLREAY--QA---WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 230 (436)
Q Consensus 156 iIiDE~h~~~~~~~--~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat 230 (436)
+-+||+|+...++. +. .+..+.+. ++....+.++||
T Consensus 219 iaidevhccsqwghdfr~dy~~l~ilkrq---------------------------------------f~~~~iigltat 259 (695)
T KOG0353|consen 219 IAIDEVHCCSQWGHDFRPDYKALGILKRQ---------------------------------------FKGAPIIGLTAT 259 (695)
T ss_pred EeecceeehhhhCcccCcchHHHHHHHHh---------------------------------------CCCCceeeeehh
Confidence 99999998755532 21 11111111 133457888888
Q ss_pred cccCchhhhcc--ccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHH----hcCCCcEEEEcCCchhHHHHH
Q 013826 231 LTQDPNKLAQL--DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ----SLGEEKCIVFTSSVESTHRLC 304 (436)
Q Consensus 231 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~~~~~lvf~~~~~~~~~~~ 304 (436)
....+..-... .+.....+..+..++ -..|.+........+...++.+ ...+...+|||-|.+.|++++
T Consensus 260 atn~vl~d~k~il~ie~~~tf~a~fnr~-----nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva 334 (695)
T KOG0353|consen 260 ATNHVLDDAKDILCIEAAFTFRAGFNRP-----NLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVA 334 (695)
T ss_pred hhcchhhHHHHHHhHHhhheeecccCCC-----CceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHH
Confidence 87654332221 111222222222221 1224444444444444444433 234667999999999999999
Q ss_pred HHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHH--------
Q 013826 305 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH-------- 376 (436)
Q Consensus 305 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q-------- 376 (436)
..|+++| +....+|..|.+.++.-+-+.|.+|+++|+|+|-.++.|||-|++++||+-+.|.|+..|.|
T Consensus 335 ~alkn~g---i~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillr 411 (695)
T KOG0353|consen 335 KALKNHG---IHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLR 411 (695)
T ss_pred HHHHhcC---ccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHH
Confidence 9999988 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----------------------------------HhhhcccCCCCceEEEEecchhH
Q 013826 377 -----------------------------------RAGRTARAGQLGRCFTLLHKDEV 399 (436)
Q Consensus 377 -----------------------------------~~GR~~R~~~~g~~~~~~~~~~~ 399 (436)
-.||+||.+.+..|++|+--.|.
T Consensus 412 mtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 412 MTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred HhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 67999999999999999865554
No 89
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=1.2e-27 Score=242.56 Aligned_cols=308 Identities=17% Similarity=0.234 Sum_probs=200.2
Q ss_pred HhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCc
Q 013826 15 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQS 94 (436)
Q Consensus 15 ~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~ 94 (436)
+.++..+..++.++++|+||||||...-..+++ .+.....++++.-|.+--+..+++.+.... |..++..+|..
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle---~~~~~~~~I~~tQPRRlAA~svA~RvA~el---g~~lG~~VGY~ 146 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQLPKICLE---LGRGSHGLIGHTQPRRLAARTVAQRIAEEL---GTPLGEKVGYK 146 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHH---cCCCCCceEecCCccHHHHHHHHHHHHHHh---CCCcceEEeeE
Confidence 344444546788999999999999853222222 111123356666688777767666655443 44444444432
Q ss_pred chhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhH-HhhHhHh-hh
Q 013826 95 SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR-LLREAYQ-AW 172 (436)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~-~~~~~~~-~~ 172 (436)
...+. ....++.|.++|++.|++.+...+ .++++++||+||+|. .++..+. ..
T Consensus 147 vR~~~-----------------------~~s~~T~I~~~TdGiLLr~l~~d~--~L~~~~~IIIDEaHERsL~~D~LL~l 201 (1283)
T TIGR01967 147 VRFHD-----------------------QVSSNTLVKLMTDGILLAETQQDR--FLSRYDTIIIDEAHERSLNIDFLLGY 201 (1283)
T ss_pred EcCCc-----------------------ccCCCceeeeccccHHHHHhhhCc--ccccCcEEEEcCcchhhccchhHHHH
Confidence 11111 112345899999999998887643 378999999999994 4443332 12
Q ss_pred HHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhccccCCceeeecC
Q 013826 173 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 252 (436)
Q Consensus 173 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~ 252 (436)
+..+.... +..+.+++|||+. ...+...+...|.+...
T Consensus 202 Lk~il~~r---------------------------------------pdLKlIlmSATld--~~~fa~~F~~apvI~V~- 239 (1283)
T TIGR01967 202 LKQLLPRR---------------------------------------PDLKIIITSATID--PERFSRHFNNAPIIEVS- 239 (1283)
T ss_pred HHHHHhhC---------------------------------------CCCeEEEEeCCcC--HHHHHHHhcCCCEEEEC-
Confidence 23332211 2357899999995 34455554444443322
Q ss_pred CccccCCccccceeeecc-C----cCcHHHHHHHHH---hcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEecccc
Q 013826 253 ETRYKLPERLESYKLICE-S----KLKPLYLVALLQ---SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 324 (436)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~-~----~~~~~~l~~~l~---~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 324 (436)
...+++... |..... . ......+...+. ....+.+|||+++.++++.+++.|++.+.....+..+||.+
T Consensus 240 Gr~~PVev~---Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~L 316 (1283)
T TIGR01967 240 GRTYPVEVR---YRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARL 316 (1283)
T ss_pred CCcccceeE---EecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCC
Confidence 222222211 111100 0 012222222222 22467899999999999999999997755557789999999
Q ss_pred chHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCC------------------CChhHHHHHhhhcccCCC
Q 013826 325 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------------------AYIKTYIHRAGRTARAGQ 386 (436)
Q Consensus 325 ~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~------------------~s~~~~~Q~~GR~~R~~~ 386 (436)
+..++..++..+ +..+||++|++.+.|+|+|++++||.++.+ .|..++.||.||+||.+
T Consensus 317 s~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~- 393 (1283)
T TIGR01967 317 SNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA- 393 (1283)
T ss_pred CHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-
Confidence 999998876543 247999999999999999999999998742 35679999999999997
Q ss_pred CceEEEEecchhHHH
Q 013826 387 LGRCFTLLHKDEVKR 401 (436)
Q Consensus 387 ~g~~~~~~~~~~~~~ 401 (436)
+|.||.+++..++..
T Consensus 394 ~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 394 PGICIRLYSEEDFNS 408 (1283)
T ss_pred CceEEEecCHHHHHh
Confidence 999999999877654
No 90
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=2.8e-26 Score=222.58 Aligned_cols=351 Identities=18% Similarity=0.217 Sum_probs=225.6
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHh
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 103 (436)
.+.-|..++||+|||+++.+|++.....+ ..++|++||+.|+.|.++++..++...|+.+.++.|+.+......
T Consensus 95 h~G~Iaem~TGeGKTL~a~Lpa~~~al~G----~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~-- 168 (896)
T PRK13104 95 HEGNIAEMRTGEGKTLVATLPAYLNAISG----RGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQE-- 168 (896)
T ss_pred ccCccccccCCCCchHHHHHHHHHHHhcC----CCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHH--
Confidence 56668999999999999999988665443 369999999999999999999999999999999999876554422
Q ss_pred hccccccccccCCchhHHHhhccCCcEEEeCchhH-HHHhhcCCCccc-----CCccEEEEehhhHHhhHh---------
Q 013826 104 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRGFTL-----EHLCYLVVDETDRLLREA--------- 168 (436)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~l~~~~~~~~-----~~~~~iIiDE~h~~~~~~--------- 168 (436)
...++|+++||..| ++++..+..+.+ ..+.++|+||+|.++-+.
T Consensus 169 ---------------------~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg 227 (896)
T PRK13104 169 ---------------------AYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISG 227 (896)
T ss_pred ---------------------HhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeC
Confidence 12469999999999 888887644444 589999999999864321
Q ss_pred -------HhhhHHHHHhhccccc------------ccc---cccc--------c---ccc---ccccccc----------
Q 013826 169 -------YQAWLPTVLQLTRSDN------------ENR---FSDA--------S---TFL---PSAFGSL---------- 202 (436)
Q Consensus 169 -------~~~~~~~i~~~~~~~~------------~~~---~~~~--------~---~~~---~~~~~~~---------- 202 (436)
.+..+..+...+.... ... +... . ..+ ...+...
T Consensus 228 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~ 307 (896)
T PRK13104 228 AAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNA 307 (896)
T ss_pred CCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHH
Confidence 1222222223222110 000 0000 0 000 0000000
Q ss_pred ------------ccccccc---cccccCCCCccce--------------------------------------eeeeecc
Q 013826 203 ------------KTIRRCG---VERGFKDKPYPRL--------------------------------------VKMVLSA 229 (436)
Q Consensus 203 ------------~~~~~~~---~~~~~~~~~~~~~--------------------------------------~~i~~sa 229 (436)
-++-..+ +...+.....+.. +.-.+|+
T Consensus 308 aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTG 387 (896)
T PRK13104 308 ALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTG 387 (896)
T ss_pred HHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCC
Confidence 0000000 0001111111110 1235566
Q ss_pred ccccCchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHh-c-CCCcEEEEcCCchhHHHHHHHH
Q 013826 230 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS-L-GEEKCIVFTSSVESTHRLCTLL 307 (436)
Q Consensus 230 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~-~~~~~lvf~~~~~~~~~~~~~l 307 (436)
|......++....-.+...+++. .+....+ ..-.+......|...+.+.+.. + .+.++||||+|++.++.++++|
T Consensus 388 Ta~te~~Ef~~iY~l~Vv~IPtn--kp~~R~d-~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L 464 (896)
T PRK13104 388 TADTEAYEFQQIYNLEVVVIPTN--RSMIRKD-EADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLL 464 (896)
T ss_pred CChhHHHHHHHHhCCCEEECCCC--CCcceec-CCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHH
Confidence 66443333333332222222222 2111111 1122333344455555554432 2 5678999999999999999999
Q ss_pred hhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCC----------------------------
Q 013826 308 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV---------------------------- 359 (436)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~---------------------------- 359 (436)
.+.+ ++...+|+.+...++..+.++|+.| .|+|||++.++|+|+.=-
T Consensus 465 ~~~g---i~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (896)
T PRK13104 465 KKEN---IKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQK 539 (896)
T ss_pred HHcC---CCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhh
Confidence 9887 8999999999999999999999999 599999999999999721
Q ss_pred ----------CeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhH-------HHHHHHHHHh
Q 013826 360 ----------NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-------KRFKKLLQKA 409 (436)
Q Consensus 360 ----------~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~-------~~~~~~~~~~ 409 (436)
=+||....+.|...-.|..||+||.|.+|.+-+|++-.|. +++.++++.+
T Consensus 540 ~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~~~f~~~~~~~~~~~~ 606 (896)
T PRK13104 540 RHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFASERVASMMRRL 606 (896)
T ss_pred hhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHHHhChHHHHHHHHHc
Confidence 1567777788888899999999999999999999876542 3455555554
No 91
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.95 E-value=3.6e-27 Score=205.42 Aligned_cols=294 Identities=25% Similarity=0.352 Sum_probs=211.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHhhhhh---CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEe
Q 013826 57 LRALVVLPTRDLALQVKDVFAAIAPAV---GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 133 (436)
Q Consensus 57 ~~~lil~P~~~l~~q~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~ 133 (436)
+.++|+-|+++|++|+...++++-... .++...+.|+.-...+..+ +..+.+|+|+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~q---------------------l~~g~~ivvG 345 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQ---------------------LKDGTHIVVG 345 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHH---------------------hhcCceeeec
Confidence 679999999999999998666553222 2333355555544444332 3456699999
Q ss_pred CchhHHHHhhcCCCcccCCccEEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccc
Q 013826 134 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 213 (436)
Q Consensus 134 T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (436)
||.++...+.... ..++..+++++||++.++..++.+.+.++...++..+.+
T Consensus 346 tpgRl~~~is~g~-~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsd--------------------------- 397 (725)
T KOG0349|consen 346 TPGRLLQPISKGL-VTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSD--------------------------- 397 (725)
T ss_pred Cchhhhhhhhccc-eeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcC---------------------------
Confidence 9999999988755 678899999999999999988888887777766543332
Q ss_pred cCCCCccceeeeeeccccccC-chhhhccccCCceeeecCCccccCCccccceee-------------------------
Q 013826 214 FKDKPYPRLVKMVLSATLTQD-PNKLAQLDLHHPLFLTTGETRYKLPERLESYKL------------------------- 267 (436)
Q Consensus 214 ~~~~~~~~~~~i~~sat~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 267 (436)
.++.+.++.|||+... +..+....+.-|+.+....... +++..++...
T Consensus 398 -----g~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~-vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~k 471 (725)
T KOG0349|consen 398 -----GFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDL-VPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTK 471 (725)
T ss_pred -----CcccccceeeeEEeEEEeeehhhhhccCceeEecccccc-cchhhccceeecCCccCccHHHHhhhhccCCcccc
Confidence 1455777888887643 2222222333333333222221 1111111100
Q ss_pred -----eccCc---------CcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHH
Q 013826 268 -----ICESK---------LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 333 (436)
Q Consensus 268 -----~~~~~---------~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~ 333 (436)
..... .+-++-...++.+...++||||.+...|..+.+++.+.+...+.+.++|++..+.||.+.+
T Consensus 472 dn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nl 551 (725)
T KOG0349|consen 472 DNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANL 551 (725)
T ss_pred cccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHH
Confidence 00011 1222333334555667999999999999999999999988889999999999999999999
Q ss_pred HHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhHHHHHHH
Q 013826 334 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 405 (436)
Q Consensus 334 ~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~ 405 (436)
+.|+.++.++||||+...+|+|+.++-.+|+...|.....|++|+||+||..+-|.++.++.....+...+.
T Consensus 552 e~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ekvwyh~ 623 (725)
T KOG0349|consen 552 ESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYHW 623 (725)
T ss_pred HhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccchheeehh
Confidence 999999999999999999999999999999999999999999999999999888998888654443333333
No 92
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.95 E-value=4.6e-26 Score=227.81 Aligned_cols=358 Identities=18% Similarity=0.161 Sum_probs=209.6
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.|++||.+++..++.-...+.++|+...+|.|||+.++..+ ..+........++|||||. .++.||.+++..|++.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL-~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~-- 244 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL-GYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPV-- 244 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCC--
Confidence 68999999999877655567889999999999999865443 3343322233469999997 6678899999999863
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHH
Q 013826 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 164 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~ 164 (436)
+.+..++|........... .......+|+|+|++.+...... +.--.+++||+||||.+
T Consensus 245 l~v~~~~G~~~eR~~~~~~------------------~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrI 303 (1033)
T PLN03142 245 LRAVKFHGNPEERAHQREE------------------LLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRI 303 (1033)
T ss_pred CceEEEeCCHHHHHHHHHH------------------HhcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCcccc
Confidence 5666666655432221110 01123468999999998664432 22235789999999987
Q ss_pred hhHhH--hhhHHHHHh---hcccccc--cccccccc----ccccccccccccc----------------------cc---
Q 013826 165 LREAY--QAWLPTVLQ---LTRSDNE--NRFSDAST----FLPSAFGSLKTIR----------------------RC--- 208 (436)
Q Consensus 165 ~~~~~--~~~~~~i~~---~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~----------------------~~--- 208 (436)
-.... ...+..+.. .+.+.+| +...+... ..+..++...... ..
T Consensus 304 KN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~L 383 (1033)
T PLN03142 304 KNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLL 383 (1033)
T ss_pred CCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHh
Confidence 55421 111211111 1111111 11000000 0001111000000 00
Q ss_pred -ccccccC-CCCccceeeeeeccccccCc--hhh-----------------------hccccCCceeeecCCccccCCcc
Q 013826 209 -GVERGFK-DKPYPRLVKMVLSATLTQDP--NKL-----------------------AQLDLHHPLFLTTGETRYKLPER 261 (436)
Q Consensus 209 -~~~~~~~-~~~~~~~~~i~~sat~~~~~--~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~ 261 (436)
....++. ..+......+.+.-|..... ..+ ....+.+|..+....... .
T Consensus 384 RR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~----~ 459 (1033)
T PLN03142 384 RRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGP----P 459 (1033)
T ss_pred hhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccC----c
Confidence 0000000 00000011111111110000 000 000111121111000000 0
Q ss_pred ccceeeeccCcCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcC
Q 013826 262 LESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 339 (436)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 339 (436)
............|...+..++... .+.++|||+........+.++|...+ +....++|+++..+|..+++.|.+.
T Consensus 460 ~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g---~~y~rIdGsts~~eRq~~Id~Fn~~ 536 (1033)
T PLN03142 460 YTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRG---YQYCRIDGNTGGEDRDASIDAFNKP 536 (1033)
T ss_pred ccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHhccc
Confidence 000000112334566666666543 46799999999999999999998766 8889999999999999999999753
Q ss_pred ---CeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEe
Q 013826 340 ---KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394 (436)
Q Consensus 340 ---~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~ 394 (436)
...+|++|.+.+.|+|+..+++||+++++|++....|++||+.|.|+...|.+|.
T Consensus 537 ~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 537 GSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred cCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 3467899999999999999999999999999999999999999999997776664
No 93
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=2.8e-26 Score=222.45 Aligned_cols=353 Identities=19% Similarity=0.191 Sum_probs=226.5
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.|++.|.-.-- .-.+.-|..+.||+|||+++.++++-.... +..+-+++||..|+.|.++++..++..+|
T Consensus 81 ~~~dvQlig~l------~L~~G~Iaem~TGeGKTLva~lpa~l~aL~----G~~V~IvTpn~yLA~rd~e~~~~l~~~LG 150 (830)
T PRK12904 81 RHFDVQLIGGM------VLHEGKIAEMKTGEGKTLVATLPAYLNALT----GKGVHVVTVNDYLAKRDAEWMGPLYEFLG 150 (830)
T ss_pred CCCccHHHhhH------HhcCCchhhhhcCCCcHHHHHHHHHHHHHc----CCCEEEEecCHHHHHHHHHHHHHHHhhcC
Confidence 46777754422 113445999999999999999988633333 23588999999999999999999999999
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhH-HHHhhcCCC-----cccCCccEEEE
Q 013826 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG-----FTLEHLCYLVV 158 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~l~~~~~-----~~~~~~~~iIi 158 (436)
+.+.++.|+.+...+... ..++|+++||..| ++.+..+.. ...+.+.++|+
T Consensus 151 lsv~~i~~~~~~~er~~~-----------------------y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIv 207 (830)
T PRK12904 151 LSVGVILSGMSPEERREA-----------------------YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIV 207 (830)
T ss_pred CeEEEEcCCCCHHHHHHh-----------------------cCCCeEEECCcchhhhhhhcccccchhhhcccccceEEE
Confidence 999999998876554321 2369999999999 888876542 23678999999
Q ss_pred ehhhHHhhHh----------------HhhhHHHHHhhccccc---------------------------ccccccccccc
Q 013826 159 DETDRLLREA----------------YQAWLPTVLQLTRSDN---------------------------ENRFSDASTFL 195 (436)
Q Consensus 159 DE~h~~~~~~----------------~~~~~~~i~~~~~~~~---------------------------~~~~~~~~~~~ 195 (436)
||++.++-+. .+..+..+...+.... .+.+......+
T Consensus 208 DEaDsiLIDeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~ 287 (830)
T PRK12904 208 DEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIAL 287 (830)
T ss_pred echhhheeccCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHH
Confidence 9999853321 2222233333221100 00000000000
Q ss_pred cc----cccccc-------cccccc---cccccCCCCccc--------------------------------------ee
Q 013826 196 PS----AFGSLK-------TIRRCG---VERGFKDKPYPR--------------------------------------LV 223 (436)
Q Consensus 196 ~~----~~~~~~-------~~~~~~---~~~~~~~~~~~~--------------------------------------~~ 223 (436)
.. ++.+.. .+-..+ +...+.....+. .+
T Consensus 288 ~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~k 367 (830)
T PRK12904 288 VHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEK 367 (830)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcch
Confidence 00 000000 000000 000000000000 01
Q ss_pred eeeeccccccCchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHh--cCCCcEEEEcCCchhHH
Q 013826 224 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTH 301 (436)
Q Consensus 224 ~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~~~~~~~ 301 (436)
...+|+|......++....-.+...+++.. +....+ ..-.+......|...+.+.+.. ..+.++||||+|++.++
T Consensus 368 l~GmTGTa~te~~E~~~iY~l~vv~IPtnk--p~~r~d-~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se 444 (830)
T PRK12904 368 LAGMTGTADTEAEEFREIYNLDVVVIPTNR--PMIRID-HPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSE 444 (830)
T ss_pred hcccCCCcHHHHHHHHHHhCCCEEEcCCCC--Ceeeee-CCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 346677764433333333322323332222 111111 1123334455567777776654 45779999999999999
Q ss_pred HHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCC----------------------
Q 013826 302 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV---------------------- 359 (436)
Q Consensus 302 ~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~---------------------- 359 (436)
.+++.|.+.+ ++...+|+. ..+|+..+.+|+.+...|+|||+++++|+|++=-
T Consensus 445 ~Ls~~L~~~g---i~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~ 519 (830)
T PRK12904 445 LLSKLLKKAG---IPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKI 519 (830)
T ss_pred HHHHHHHHCC---CceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHH
Confidence 9999999877 888999995 6689999999999999999999999999999732
Q ss_pred --------C--------eEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchh
Q 013826 360 --------N--------NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398 (436)
Q Consensus 360 --------~--------~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 398 (436)
. +||....+.|...-.|..||+||.|.+|.+-.|++-.|
T Consensus 520 ~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 520 KAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred HHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 1 57777788899999999999999999999999987654
No 94
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=2.7e-26 Score=217.53 Aligned_cols=315 Identities=17% Similarity=0.173 Sum_probs=215.1
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013826 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
+| +|-++|.+|+.... ++.++++.|+|.+|||.+|-.++.-.. .+..|++|.+|-++|-+|-++.|+..+.
T Consensus 295 pF-elD~FQk~Ai~~le----rg~SVFVAAHTSAGKTvVAEYAialaq----~h~TR~iYTSPIKALSNQKfRDFk~tF~ 365 (1248)
T KOG0947|consen 295 PF-ELDTFQKEAIYHLE----RGDSVFVAAHTSAGKTVVAEYAIALAQ----KHMTRTIYTSPIKALSNQKFRDFKETFG 365 (1248)
T ss_pred CC-CccHHHHHHHHHHH----cCCeEEEEecCCCCcchHHHHHHHHHH----hhccceEecchhhhhccchHHHHHHhcc
Confidence 44 57889988877544 589999999999999998766544322 2556899999999999999999999886
Q ss_pred hhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehh
Q 013826 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 161 (436)
Q Consensus 82 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~ 161 (436)
+.| +++|+..... ....+|||.+.|.+++-++.++ ++++..||+||+
T Consensus 366 Dvg----LlTGDvqinP----------------------------eAsCLIMTTEILRsMLYrgadl-iRDvE~VIFDEV 412 (1248)
T KOG0947|consen 366 DVG----LLTGDVQINP----------------------------EASCLIMTTEILRSMLYRGADL-IRDVEFVIFDEV 412 (1248)
T ss_pred ccc----eeecceeeCC----------------------------CcceEeehHHHHHHHHhcccch-hhccceEEEeee
Confidence 544 6888875432 3489999999999999887654 788999999999
Q ss_pred hHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchh--hh
Q 013826 162 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK--LA 239 (436)
Q Consensus 162 h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~--~~ 239 (436)
|-+.+..-+..++.+.=+++. .++.|++|||.++..+. |+
T Consensus 413 HYiND~eRGvVWEEViIMlP~--------------------------------------HV~~IlLSATVPN~~EFA~WI 454 (1248)
T KOG0947|consen 413 HYINDVERGVVWEEVIIMLPR--------------------------------------HVNFILLSATVPNTLEFADWI 454 (1248)
T ss_pred eecccccccccceeeeeeccc--------------------------------------cceEEEEeccCCChHHHHHHh
Confidence 977655544444444433322 23456666666654322 11
Q ss_pred ccccCCceeeecCCccccCCc----------------------------------------------------------c
Q 013826 240 QLDLHHPLFLTTGETRYKLPE----------------------------------------------------------R 261 (436)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------~ 261 (436)
.......+.+.....++.+-+ .
T Consensus 455 GRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~ 534 (1248)
T KOG0947|consen 455 GRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTN 534 (1248)
T ss_pred hhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCC
Confidence 111111111110000000000 0
Q ss_pred ccce----eeeccCcC---cHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcc----------------------
Q 013826 262 LESY----KLICESKL---KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE---------------------- 312 (436)
Q Consensus 262 ~~~~----~~~~~~~~---~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~---------------------- 312 (436)
.... ........ ...-+...++...--++||||-|++.|+..+++|.....
T Consensus 535 ~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~ 614 (1248)
T KOG0947|consen 535 YHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKG 614 (1248)
T ss_pred CCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcCh
Confidence 0000 00000011 123344455555667999999999999999999976422
Q ss_pred --------------cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCC---------C
Q 013826 313 --------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP---------A 369 (436)
Q Consensus 313 --------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~---------~ 369 (436)
..-+++++||++-+--++-+.-.|..|-++||++|.++..|+|+|. ++||+-+.. -
T Consensus 615 ~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPA-RtvVF~Sl~KhDG~efR~L 693 (1248)
T KOG0947|consen 615 EDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPA-RTVVFSSLRKHDGNEFREL 693 (1248)
T ss_pred hhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCc-eeEEeeehhhccCcceeec
Confidence 1127899999999988888888999999999999999999999996 445554432 2
Q ss_pred ChhHHHHHhhhcccCCCC--ceEEEEecch
Q 013826 370 YIKTYIHRAGRTARAGQL--GRCFTLLHKD 397 (436)
Q Consensus 370 s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~ 397 (436)
.+.+|.|+.||+||.|-+ |.+++++.+.
T Consensus 694 ~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 694 LPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred CChhHHhhhccccccccCcCceEEEEecCC
Confidence 588999999999999866 8888887654
No 95
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.1e-26 Score=224.26 Aligned_cols=353 Identities=19% Similarity=0.220 Sum_probs=222.9
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.|++.|.-.--. + .+.-|..+.||+|||+++.++++-....+ ..+-+++|+..|+.|-++++..++..+|
T Consensus 80 ~~~dvQlig~l~-l-----~~G~iaEm~TGEGKTLvA~l~a~l~al~G----~~v~vvT~neyLA~Rd~e~~~~~~~~LG 149 (796)
T PRK12906 80 RPFDVQIIGGIV-L-----HEGNIAEMKTGEGKTLTATLPVYLNALTG----KGVHVVTVNEYLSSRDATEMGELYRWLG 149 (796)
T ss_pred CCchhHHHHHHH-H-----hcCCcccccCCCCCcHHHHHHHHHHHHcC----CCeEEEeccHHHHHhhHHHHHHHHHhcC
Confidence 467777554321 1 33449999999999999988887666544 4799999999999999999999999999
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhH-HHHhhcCCC-----cccCCccEEEE
Q 013826 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG-----FTLEHLCYLVV 158 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~l~~~~~-----~~~~~~~~iIi 158 (436)
+.++++.++.+...... ...++|.++|...+ ++.|+.+.. .....+.+.||
T Consensus 150 l~vg~i~~~~~~~~r~~-----------------------~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIv 206 (796)
T PRK12906 150 LTVGLNLNSMSPDEKRA-----------------------AYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIV 206 (796)
T ss_pred CeEEEeCCCCCHHHHHH-----------------------HhcCCCeecCCccccccchhhccccchhhhhccCcceeee
Confidence 99999998876554422 23469999998777 334443211 23457889999
Q ss_pred ehhhHHhhHh----------------HhhhHHHHHhhccccc--------------------------------------
Q 013826 159 DETDRLLREA----------------YQAWLPTVLQLTRSDN-------------------------------------- 184 (436)
Q Consensus 159 DE~h~~~~~~----------------~~~~~~~i~~~~~~~~-------------------------------------- 184 (436)
||++.++-+. .+..+..+...+....
T Consensus 207 DEvDSiLiDeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i 286 (796)
T PRK12906 207 DEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGL 286 (796)
T ss_pred ccchheeeccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCC
Confidence 9999842211 1222222222221110
Q ss_pred cccccccccccccc----cccc-------ccccccc---cccccCCCCccc-----------------------------
Q 013826 185 ENRFSDASTFLPSA----FGSL-------KTIRRCG---VERGFKDKPYPR----------------------------- 221 (436)
Q Consensus 185 ~~~~~~~~~~~~~~----~~~~-------~~~~~~~---~~~~~~~~~~~~----------------------------- 221 (436)
++.+......+..+ +.+. -.+-..+ +...+.....+.
T Consensus 287 ~~l~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~I 366 (796)
T PRK12906 287 DNLYDSENTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATI 366 (796)
T ss_pred ccccCchhhhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeee
Confidence 00000000000000 0000 0000000 000000000000
Q ss_pred ---------eeeeeeccccccCchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhc--CCCcE
Q 013826 222 ---------LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKC 290 (436)
Q Consensus 222 ---------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~ 290 (436)
.+...+|+|......++......+...+++.. +....+ ..-.+......|...+.+.+... .+.++
T Consensus 367 t~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPtnk--p~~r~d-~~d~i~~t~~~K~~al~~~i~~~~~~g~pv 443 (796)
T PRK12906 367 TYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNR--PVIRKD-SPDLLYPTLDSKFNAVVKEIKERHAKGQPV 443 (796)
T ss_pred hHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEEcCCCC--Ceeeee-CCCeEEcCHHHHHHHHHHHHHHHHhCCCCE
Confidence 01335666664333333332222222222211 111111 11222333455666677666443 67899
Q ss_pred EEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCC---CCC-----eE
Q 013826 291 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE---GVN-----NV 362 (436)
Q Consensus 291 lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~---~~~-----~v 362 (436)
||||+|++.++.++..|.+.+ ++...+|+.+...|+..+..+++.|. |+|+|++.++|+|++ ++. +|
T Consensus 444 LI~t~si~~se~ls~~L~~~g---i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhV 518 (796)
T PRK12906 444 LVGTVAIESSERLSHLLDEAG---IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAV 518 (796)
T ss_pred EEEeCcHHHHHHHHHHHHHCC---CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEE
Confidence 999999999999999999887 88999999998877777777777774 999999999999995 778 99
Q ss_pred EEecCCCChhHHHHHhhhcccCCCCceEEEEecchh
Q 013826 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398 (436)
Q Consensus 363 i~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 398 (436)
|.+..|.|...+.|+.||+||.|.+|.+..|++..|
T Consensus 519 I~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 519 IGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred EeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 999999999999999999999999999999988765
No 96
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.95 E-value=5.4e-26 Score=214.46 Aligned_cols=339 Identities=16% Similarity=0.137 Sum_probs=207.5
Q ss_pred CcccchhHHHHHhhhCCCCCC-CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhh
Q 013826 4 SSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 82 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~-~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 82 (436)
..+|.||++|+..+.+++.++ +.++++|+||+|||++++. ++..+...+ .-.++|||+-+++|+.|.+..+..+.++
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~~-~~KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKSG-WVKRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhcc-hhheeeEEechHHHHHHHHHHHHHhCCC
Confidence 468999999999999999887 4599999999999998755 555555543 3448999999999999999999998876
Q ss_pred hCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcC----CCcccCCccEEEE
Q 013826 83 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT----RGFTLEHLCYLVV 158 (436)
Q Consensus 83 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~----~~~~~~~~~~iIi 158 (436)
. -....+.+... ...++|+++|++++....... ..+....|++||+
T Consensus 242 ~-~~~n~i~~~~~-----------------------------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvI 291 (875)
T COG4096 242 G-TKMNKIEDKKG-----------------------------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVI 291 (875)
T ss_pred c-cceeeeecccC-----------------------------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEe
Confidence 3 22222222221 113489999999998877654 1234556999999
Q ss_pred ehhhHHhhHhHhhhHHHHHhhcc----cccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccC
Q 013826 159 DETDRLLREAYQAWLPTVLQLTR----SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 234 (436)
Q Consensus 159 DE~h~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~ 234 (436)
||||+-....+...+.++-.... .+..........++. ..++..++.+.++.+...-..+.+-.--- ..
T Consensus 292 DEaHRgi~~~~~~I~dYFdA~~~gLTATP~~~~d~~T~~~F~-----g~Pt~~YsleeAV~DGfLvpy~vi~i~~~--~~ 364 (875)
T COG4096 292 DEAHRGIYSEWSSILDYFDAATQGLTATPKETIDRSTYGFFN-----GEPTYAYSLEEAVEDGFLVPYKVIRIDTD--FD 364 (875)
T ss_pred chhhhhHHhhhHHHHHHHHHHHHhhccCcccccccccccccC-----CCcceeecHHHHhhccccCCCCceEEeee--cc
Confidence 99998655555544433332222 222211112222221 34555666666666665444332211100 01
Q ss_pred chhhhccccC-----CceeeecCCccccCCccc-cceeeeccCcCcHHHHHHHHHh--cC--CCcEEEEcCCchhHHHHH
Q 013826 235 PNKLAQLDLH-----HPLFLTTGETRYKLPERL-ESYKLICESKLKPLYLVALLQS--LG--EEKCIVFTSSVESTHRLC 304 (436)
Q Consensus 235 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~--~~--~~~~lvf~~~~~~~~~~~ 304 (436)
...+....+. ....+.. .......... ....+..........+.+.+.. .. -+|+||||.+..||+.+.
T Consensus 365 ~~G~~~~~~serek~~g~~i~~-dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~ 443 (875)
T COG4096 365 LDGWKPDAGSEREKLQGEAIDE-DDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIR 443 (875)
T ss_pred ccCcCcCccchhhhhhccccCc-ccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHH
Confidence 0000000000 0000000 0000000000 0011111122223344444444 22 469999999999999999
Q ss_pred HHHhhhccc-c-eeEEEeccccchHHHHHHHHHHhcC--CeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhh
Q 013826 305 TLLNHFGEL-R-IKIKEYSGLQRQSVRSKTLKAFREG--KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 380 (436)
Q Consensus 305 ~~l~~~~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR 380 (436)
..|.+.... + --+..+.++... -...+..|... ..+|.|+++++..|+|+|.|-++|++....|...|.||+||
T Consensus 444 ~~~~~~ype~~~~~a~~IT~d~~~--~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGR 521 (875)
T COG4096 444 EALVNEYPEYNGRYAMKITGDAEQ--AQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGR 521 (875)
T ss_pred HHHHHhCccccCceEEEEeccchh--hHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcC
Confidence 999876432 1 235556655544 34456666653 46788999999999999999999999999999999999999
Q ss_pred cccC
Q 013826 381 TARA 384 (436)
Q Consensus 381 ~~R~ 384 (436)
+.|.
T Consensus 522 GTRl 525 (875)
T COG4096 522 GTRL 525 (875)
T ss_pred cccc
Confidence 9993
No 97
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=1e-25 Score=214.73 Aligned_cols=339 Identities=21% Similarity=0.242 Sum_probs=239.1
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013826 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
|...++.||.+++. ...++.+++.|..+||+.|||+++-+.++..+.-. +..++.+.|-.+.+.+-...+..++.
T Consensus 220 gi~~~fewq~ecls--~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~---rr~~llilp~vsiv~Ek~~~l~~~~~ 294 (1008)
T KOG0950|consen 220 GILKLFEWQAECLS--LPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR---RRNVLLILPYVSIVQEKISALSPFSI 294 (1008)
T ss_pred hHHHHHHHHHHHhc--chhhhcccceEEeCCCccchHHHHHHHHHHHHHHH---hhceeEecceeehhHHHHhhhhhhcc
Confidence 66788999999875 45566789999999999999999998888776543 33699999999999999999999988
Q ss_pred hhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCC-cccCCccEEEEeh
Q 013826 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDE 160 (436)
Q Consensus 82 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~-~~~~~~~~iIiDE 160 (436)
..|+.+..+.|..+.... .....+.|+|.++-..+..+... -.+..+++|||||
T Consensus 295 ~~G~~ve~y~g~~~p~~~-------------------------~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdE 349 (1008)
T KOG0950|consen 295 DLGFPVEEYAGRFPPEKR-------------------------RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDE 349 (1008)
T ss_pred ccCCcchhhcccCCCCCc-------------------------ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEee
Confidence 889998888866543222 12238999999987655443211 1366799999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccC--chhh
Q 013826 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD--PNKL 238 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~--~~~~ 238 (436)
.|.+.+.+-+..++.++......+.. ..++.+.+|||+.+. ...+
T Consensus 350 lhmi~d~~rg~~lE~~l~k~~y~~~~---------------------------------~~~~iIGMSATi~N~~lL~~~ 396 (1008)
T KOG0950|consen 350 LHMIGDKGRGAILELLLAKILYENLE---------------------------------TSVQIIGMSATIPNNSLLQDW 396 (1008)
T ss_pred eeeeeccccchHHHHHHHHHHHhccc---------------------------------cceeEeeeecccCChHHHHHH
Confidence 99998888888888888766543322 115789999999653 2223
Q ss_pred hccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHH-------------------H-Hhc-CCCcEEEEcCCc
Q 013826 239 AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL-------------------L-QSL-GEEKCIVFTSSV 297 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------------------l-~~~-~~~~~lvf~~~~ 297 (436)
....++ ..+.+..++.+.+.......... +...+..+ . +.. ++.++||||+++
T Consensus 397 L~A~~y-----~t~fRPv~L~E~ik~G~~i~~~~-r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk 470 (1008)
T KOG0950|consen 397 LDAFVY-----TTRFRPVPLKEYIKPGSLIYESS-RNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSK 470 (1008)
T ss_pred hhhhhe-----ecccCcccchhccCCCcccccch-hhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcc
Confidence 332222 11111111111111111111110 11111111 1 111 244699999999
Q ss_pred hhHHHHHHHHhhhcc-----------------------------------cceeEEEeccccchHHHHHHHHHHhcCCee
Q 013826 298 ESTHRLCTLLNHFGE-----------------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342 (436)
Q Consensus 298 ~~~~~~~~~l~~~~~-----------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 342 (436)
..|+.++..+...-. ...+++++|.+++.++|+.+...|++|...
T Consensus 471 ~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~ 550 (1008)
T KOG0950|consen 471 KNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIF 550 (1008)
T ss_pred cchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeE
Confidence 999999876633210 123799999999999999999999999999
Q ss_pred EEEecCCcccccCCCCCCeEEEecC----CCChhHHHHHhhhcccCCCC--ceEEEEecchhHHHHHHHHHHh
Q 013826 343 VLVSSDAMTRGMDVEGVNNVVNYDK----PAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVKRFKKLLQKA 409 (436)
Q Consensus 343 vlv~t~~~~~Gidi~~~~~vi~~~~----~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~~~~~~~~~~ 409 (436)
|+.+|+.+..|+|+|..++++-... ..+..+|.||+||+||.|-+ |.+++++...+.++...++...
T Consensus 551 vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~ 623 (1008)
T KOG0950|consen 551 VLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSP 623 (1008)
T ss_pred EEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhcc
Confidence 9999999999999998887765432 34577999999999999866 9999999999988887776553
No 98
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.94 E-value=2.4e-24 Score=211.87 Aligned_cols=333 Identities=15% Similarity=0.131 Sum_probs=194.3
Q ss_pred ccchhHHHHHhhhCCCCC------CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 6 LFPVQVAVWQETIGPGLF------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~------~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
+|.+|.+|++++++.+.. .+.+++++|||||||++++..+...+.. ...+++|||+|+.+|..|+.+.|..+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~--~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL--LKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh--cCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 789999999999887654 3579999999999999877666544432 35678999999999999999999987
Q ss_pred hhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhh-ccCCcEEEeCchhHHHHhhcC-CCcccCCc-cEE
Q 013826 80 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINAT-RGFTLEHL-CYL 156 (436)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~T~~~l~~~l~~~-~~~~~~~~-~~i 156 (436)
+... + .+..+. .... ..+ .....|+|+|.+++.+.+... ..+..... .+|
T Consensus 317 ~~~~---~---~~~~s~-~~L~--------------------~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lv 369 (667)
T TIGR00348 317 QKDC---A---ERIESI-AELK--------------------RLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVV 369 (667)
T ss_pred CCCC---C---cccCCH-HHHH--------------------HHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEE
Confidence 5311 0 011111 1111 111 123589999999998644321 11111122 389
Q ss_pred EEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCch
Q 013826 157 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236 (436)
Q Consensus 157 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 236 (436)
|+||||+.....+...+...+. ....+.+||||.....
T Consensus 370 IvDEaHrs~~~~~~~~l~~~~p------------------------------------------~a~~lGfTaTP~~~~d 407 (667)
T TIGR00348 370 IFDEAHRSQYGELAKNLKKALK------------------------------------------NASFFGFTGTPIFKKD 407 (667)
T ss_pred EEEcCccccchHHHHHHHhhCC------------------------------------------CCcEEEEeCCCccccc
Confidence 9999998765555444433221 1134666666643211
Q ss_pred h----hhc-----------------cccCCceeeecCCccccCC-cc----ccceeeec---------------------
Q 013826 237 K----LAQ-----------------LDLHHPLFLTTGETRYKLP-ER----LESYKLIC--------------------- 269 (436)
Q Consensus 237 ~----~~~-----------------~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~--------------------- 269 (436)
. ... .+..-|+.+.......... .. ...+....
T Consensus 408 ~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 487 (667)
T TIGR00348 408 RDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKK 487 (667)
T ss_pred ccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHh
Confidence 1 000 0000011111000000000 00 00000000
Q ss_pred --cCcCcHHH----HHHHHHhc---CCCcEEEEcCCchhHHHHHHHHhhhcccc--eeEEEeccccchH-----------
Q 013826 270 --ESKLKPLY----LVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQS----------- 327 (436)
Q Consensus 270 --~~~~~~~~----l~~~l~~~---~~~~~lvf~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~----------- 327 (436)
........ +.+..... ...+++|+|.++++|..+.+.|.+..... .....+++..+..
T Consensus 488 ~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~ 567 (667)
T TIGR00348 488 ILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIR 567 (667)
T ss_pred hhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhc
Confidence 00000111 11111111 24799999999999999999987653322 2334444433221
Q ss_pred ----------HHHHHHHHHhc-CCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccC-C-CCceEEEEe
Q 013826 328 ----------VRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA-G-QLGRCFTLL 394 (436)
Q Consensus 328 ----------~r~~~~~~f~~-g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~-~-~~g~~~~~~ 394 (436)
.....+++|++ +..+|||+++++.+|+|.|.++++++..+..+. .++|++||+.|. . .+..++++.
T Consensus 568 ~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~~~~~K~~g~IvD 646 (667)
T TIGR00348 568 TKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRIDGKDKTFGLIVD 646 (667)
T ss_pred cccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccccCCCCCCEEEEE
Confidence 12367888976 688999999999999999999999998877764 589999999994 3 233345554
Q ss_pred cchhHHHHHHHHHHhc
Q 013826 395 HKDEVKRFKKLLQKAD 410 (436)
Q Consensus 395 ~~~~~~~~~~~~~~~~ 410 (436)
-....+.+.+.++.+.
T Consensus 647 y~g~~~~l~~Al~~y~ 662 (667)
T TIGR00348 647 YRGLEKSLIDALSLYG 662 (667)
T ss_pred CcChHHHHHHHHHHhc
Confidence 4555666666666543
No 99
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=3.5e-25 Score=217.48 Aligned_cols=320 Identities=20% Similarity=0.180 Sum_probs=222.9
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+|| .|-++|++++..+- ++.+++++||||+|||.++-.++...+.+ +.+++|.+|.++|.+|.++++...+
T Consensus 116 ~~F-~LD~fQ~~a~~~Le----r~esVlV~ApTssGKTvVaeyAi~~al~~----~qrviYTsPIKALsNQKyrdl~~~f 186 (1041)
T COG4581 116 YPF-ELDPFQQEAIAILE----RGESVLVCAPTSSGKTVVAEYAIALALRD----GQRVIYTSPIKALSNQKYRDLLAKF 186 (1041)
T ss_pred CCC-CcCHHHHHHHHHHh----CCCcEEEEccCCCCcchHHHHHHHHHHHc----CCceEeccchhhhhhhHHHHHHHHh
Confidence 356 48899988866443 58999999999999999988877766654 3479999999999999999998877
Q ss_pred hhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEeh
Q 013826 81 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 160 (436)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE 160 (436)
.+..-.+++++|+.+... ...++|+|.+.|.+++-++. ..+.++..||+||
T Consensus 187 gdv~~~vGL~TGDv~IN~----------------------------~A~clvMTTEILRnMlyrg~-~~~~~i~~ViFDE 237 (1041)
T COG4581 187 GDVADMVGLMTGDVSINP----------------------------DAPCLVMTTEILRNMLYRGS-ESLRDIEWVVFDE 237 (1041)
T ss_pred hhhhhhccceecceeeCC----------------------------CCceEEeeHHHHHHHhccCc-ccccccceEEEEe
Confidence 544234577888875433 34899999999999998864 6688999999999
Q ss_pred hhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchh--h
Q 013826 161 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK--L 238 (436)
Q Consensus 161 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~--~ 238 (436)
+|.+.+..-+..++.+.-++.. .++.+++|||.++..+. |
T Consensus 238 vHyi~D~eRG~VWEE~Ii~lP~--------------------------------------~v~~v~LSATv~N~~EF~~W 279 (1041)
T COG4581 238 VHYIGDRERGVVWEEVIILLPD--------------------------------------HVRFVFLSATVPNAEEFAEW 279 (1041)
T ss_pred eeeccccccchhHHHHHHhcCC--------------------------------------CCcEEEEeCCCCCHHHHHHH
Confidence 9988777666666776666543 34678999999876444 3
Q ss_pred hccccCCceeeecCCccccCCcc-----ccceeeecc-------------------------------------------
Q 013826 239 AQLDLHHPLFLTTGETRYKLPER-----LESYKLICE------------------------------------------- 270 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~------------------------------------------- 270 (436)
....-..+..+.....++.+-.. ...+.....
T Consensus 280 i~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~ 359 (1041)
T COG4581 280 IQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRG 359 (1041)
T ss_pred HHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCC
Confidence 33222223322222111111000 000000000
Q ss_pred ---CcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcc-----------------------------------
Q 013826 271 ---SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE----------------------------------- 312 (436)
Q Consensus 271 ---~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~----------------------------------- 312 (436)
.......+...+.....-++++|+-++..|+..+..+.....
T Consensus 360 ~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~ 439 (1041)
T COG4581 360 SAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEI 439 (1041)
T ss_pred cccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHH
Confidence 001112233334444556899999999999888877742100
Q ss_pred ---cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecC---------CCChhHHHHHhhh
Q 013826 313 ---LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK---------PAYIKTYIHRAGR 380 (436)
Q Consensus 313 ---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~---------~~s~~~~~Q~~GR 380 (436)
+.-.++++|+++=+..+..+...|..|-.+|+++|.+++.|+|+|.-++|+ ... .-++.+|.|+.||
T Consensus 440 ~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l~K~dG~~~r~L~~gEy~QmsGR 518 (1041)
T COG4581 440 SALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSLSKFDGNGHRWLSPGEYTQMSGR 518 (1041)
T ss_pred HHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eeeEEecCCceeecChhHHHHhhhh
Confidence 011467899999999999999999999999999999999999999755544 322 2468899999999
Q ss_pred cccCCCC--ceEEEEecch
Q 013826 381 TARAGQL--GRCFTLLHKD 397 (436)
Q Consensus 381 ~~R~~~~--g~~~~~~~~~ 397 (436)
+||.|.+ |.+++...+.
T Consensus 519 AGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 519 AGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred hccccccccceEEEecCCC
Confidence 9999977 7777775443
No 100
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=3e-24 Score=207.97 Aligned_cols=364 Identities=17% Similarity=0.207 Sum_probs=229.1
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.+++.|. +..+.-.+.-|..++||.|||+++.+|++..... +..+.|++|+..|+.|-++++..++...|
T Consensus 82 ~~ydVQl------iGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~----g~~VhIvT~ndyLA~RD~e~m~~l~~~lG 151 (908)
T PRK13107 82 RHFDVQL------LGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALT----GKGVHVITVNDYLARRDAENNRPLFEFLG 151 (908)
T ss_pred CcCchHH------hcchHhcCCccccccCCCCchHHHHHHHHHHHhc----CCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 3666673 3333335667999999999999999988755543 33599999999999999999999999999
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhH-HHHhhcCCCcc-----cCCccEEEE
Q 013826 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRGFT-----LEHLCYLVV 158 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~l~~~~~~~-----~~~~~~iIi 158 (436)
+.+.+..++.+.... .....++|+++||..| +++|..+.... ...+.++||
T Consensus 152 lsv~~i~~~~~~~~r-----------------------~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIv 208 (908)
T PRK13107 152 LTVGINVAGLGQQEK-----------------------KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALI 208 (908)
T ss_pred CeEEEecCCCCHHHH-----------------------HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeee
Confidence 999999888764332 1223579999999999 88887763333 377899999
Q ss_pred ehhhHHhhHh----------------HhhhHHHHHhhcccc-c--------cccccccc----------------ccc--
Q 013826 159 DETDRLLREA----------------YQAWLPTVLQLTRSD-N--------ENRFSDAS----------------TFL-- 195 (436)
Q Consensus 159 DE~h~~~~~~----------------~~~~~~~i~~~~~~~-~--------~~~~~~~~----------------~~~-- 195 (436)
||++.++.+. .+..+..+...+... . ...+.... ..+
T Consensus 209 DEvDsiLiDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~ 288 (908)
T PRK13107 209 DEVDSILIDEARTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIE 288 (908)
T ss_pred cchhhhccccCCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHh
Confidence 9999864421 111122222211100 0 00000000 000
Q ss_pred -------cccccccc----------------------cccccc---cccccCCCCccce---------------------
Q 013826 196 -------PSAFGSLK----------------------TIRRCG---VERGFKDKPYPRL--------------------- 222 (436)
Q Consensus 196 -------~~~~~~~~----------------------~~~~~~---~~~~~~~~~~~~~--------------------- 222 (436)
...+.... .+-..+ +...+.....+..
T Consensus 289 ~~~~~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e 368 (908)
T PRK13107 289 RGMLAEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNE 368 (908)
T ss_pred CCcccCcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCC
Confidence 00000000 000000 0001111111110
Q ss_pred -----------------eeeeeccccccCchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHh-
Q 013826 223 -----------------VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS- 284 (436)
Q Consensus 223 -----------------~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~- 284 (436)
+...+|+|......++....-.+...+++.. +....+.. -.+......|...+.+.+..
T Consensus 369 ~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnk--p~~R~d~~-d~iy~t~~~K~~Aii~ei~~~ 445 (908)
T PRK13107 369 NQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNR--PMVRKDMA-DLVYLTADEKYQAIIKDIKDC 445 (908)
T ss_pred ceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCC--CccceeCC-CcEEeCHHHHHHHHHHHHHHH
Confidence 1235566664433333333322322232222 11111111 12223334444444443332
Q ss_pred c-CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCC----
Q 013826 285 L-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV---- 359 (436)
Q Consensus 285 ~-~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~---- 359 (436)
+ .+.++||||.|++.++.++.+|.+.+ +....+|+.+...++..+.++|+.|. |+|||++.++|+|+.=-
T Consensus 446 ~~~GrpVLV~t~sv~~se~ls~~L~~~g---i~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~ 520 (908)
T PRK13107 446 RERGQPVLVGTVSIEQSELLARLMVKEK---IPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWN 520 (908)
T ss_pred HHcCCCEEEEeCcHHHHHHHHHHHHHCC---CCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchH
Confidence 2 46789999999999999999999887 88899999999999999999999997 99999999999999721
Q ss_pred ---------------------------------CeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhH-------
Q 013826 360 ---------------------------------NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV------- 399 (436)
Q Consensus 360 ---------------------------------~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~------- 399 (436)
=+||....+.|...-.|..||+||.|.+|.+.+|++-.|.
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~r~f~~ 600 (908)
T PRK13107 521 MEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMRIFAS 600 (908)
T ss_pred HhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHHHHhCh
Confidence 1577777888888899999999999999999999876553
Q ss_pred HHHHHHHHHh
Q 013826 400 KRFKKLLQKA 409 (436)
Q Consensus 400 ~~~~~~~~~~ 409 (436)
+++.++++.+
T Consensus 601 ~~~~~~~~~~ 610 (908)
T PRK13107 601 DRVSGMMKKL 610 (908)
T ss_pred HHHHHHHHHc
Confidence 4455666555
No 101
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=4.5e-24 Score=205.34 Aligned_cols=327 Identities=20% Similarity=0.189 Sum_probs=215.1
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh
Q 013826 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 83 (436)
..+.+.|..|+..+...+...+..++.+.||||||-+++-.+.+.+..+ ..+|+|+|..+|..|+...|+..+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G----kqvLvLVPEI~Ltpq~~~rf~~rF--- 269 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG----KQVLVLVPEIALTPQLLARFKARF--- 269 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC----CEEEEEeccccchHHHHHHHHHHh---
Confidence 3678899999999888663347799999999999999988888777654 379999999999999999999876
Q ss_pred CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhc-cCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhh
Q 013826 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 162 (436)
Q Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h 162 (436)
|.++..++++.+..... +.|.... .+..|+|+|-..+ ...++++++||+||-|
T Consensus 270 g~~v~vlHS~Ls~~er~------------------~~W~~~~~G~~~vVIGtRSAl--------F~Pf~~LGLIIvDEEH 323 (730)
T COG1198 270 GAKVAVLHSGLSPGERY------------------RVWRRARRGEARVVIGTRSAL--------FLPFKNLGLIIVDEEH 323 (730)
T ss_pred CCChhhhcccCChHHHH------------------HHHHHHhcCCceEEEEechhh--------cCchhhccEEEEeccc
Confidence 68889999998877763 4455554 4589999994333 2458899999999999
Q ss_pred HHhh---HhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhh
Q 013826 163 RLLR---EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239 (436)
Q Consensus 163 ~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~ 239 (436)
.-.= +....+...+.-. +........++-|||++-......
T Consensus 324 D~sYKq~~~prYhARdvA~~------------------------------------Ra~~~~~pvvLgSATPSLES~~~~ 367 (730)
T COG1198 324 DSSYKQEDGPRYHARDVAVL------------------------------------RAKKENAPVVLGSATPSLESYANA 367 (730)
T ss_pred cccccCCcCCCcCHHHHHHH------------------------------------HHHHhCCCEEEecCCCCHHHHHhh
Confidence 4210 0111111111111 111133467899999854333333
Q ss_pred ccccCCceeeecCCccccCCccccceeeeccCcC----cHHHHHHHHHhc--CCCcEEEEcCC-----------------
Q 013826 240 QLDLHHPLFLTTGETRYKLPERLESYKLICESKL----KPLYLVALLQSL--GEEKCIVFTSS----------------- 296 (436)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~--~~~~~lvf~~~----------------- 296 (436)
..+.+.......+... ...-............. ....+.+.+++. .++++|+|.|.
T Consensus 368 ~~g~y~~~~L~~R~~~-a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~ 446 (730)
T COG1198 368 ESGKYKLLRLTNRAGR-ARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAE 446 (730)
T ss_pred hcCceEEEEccccccc-cCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCccc
Confidence 2222222222222221 11111111111111111 223444444332 46778888887
Q ss_pred -------------------------------------------chhHHHHHHHHhhhcccceeEEEeccccchH--HHHH
Q 013826 297 -------------------------------------------VESTHRLCTLLNHFGELRIKIKEYSGLQRQS--VRSK 331 (436)
Q Consensus 297 -------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~r~~ 331 (436)
..-++++++.|+.. .++.++..+.++.... .-..
T Consensus 447 Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~-FP~~rv~r~d~Dtt~~k~~~~~ 525 (730)
T COG1198 447 CPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRL-FPGARIIRIDSDTTRRKGALED 525 (730)
T ss_pred CCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHH-CCCCcEEEEccccccchhhHHH
Confidence 22336666666654 2345677777666543 3557
Q ss_pred HHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCC------------ChhHHHHHhhhcccCCCCceEEEEecchhH
Q 013826 332 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------------YIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399 (436)
Q Consensus 332 ~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 399 (436)
.+..|.+|+.+|||+|+|+..|.|+|+++.|...+... ....+.|..||+||.+.+|.+++.....+-
T Consensus 526 ~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~h 605 (730)
T COG1198 526 LLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDH 605 (730)
T ss_pred HHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCc
Confidence 89999999999999999999999999999988776542 244568999999999889999998765553
Q ss_pred HH
Q 013826 400 KR 401 (436)
Q Consensus 400 ~~ 401 (436)
..
T Consensus 606 p~ 607 (730)
T COG1198 606 PA 607 (730)
T ss_pred HH
Confidence 33
No 102
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.92 E-value=4e-24 Score=182.12 Aligned_cols=185 Identities=31% Similarity=0.520 Sum_probs=150.1
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh-cCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
+|++.|+++|.++++.+.. ++++++.+|||+|||.+++++++..+.... ..+++++|++|+++|+.|+.+.+..+
T Consensus 17 ~~~~~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~ 92 (203)
T cd00268 17 LGFEKPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKL 92 (203)
T ss_pred cCCCCCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHH
Confidence 5889999999999988775 899999999999999999999988887651 24668999999999999999999998
Q ss_pred hhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEe
Q 013826 80 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 159 (436)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiD 159 (436)
....++.+..+.|+......... ...+++|+|+||+.+...+.... ..+.+++++|+|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~iiv~T~~~l~~~l~~~~-~~~~~l~~lIvD 150 (203)
T cd00268 93 GKHTNLKVVVIYGGTSIDKQIRK---------------------LKRGPHIVVATPGRLLDLLERGK-LDLSKVKYLVLD 150 (203)
T ss_pred hccCCceEEEEECCCCHHHHHHH---------------------hcCCCCEEEEChHHHHHHHHcCC-CChhhCCEEEEe
Confidence 87667888888888765444221 22467999999999999888655 678899999999
Q ss_pred hhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhh
Q 013826 160 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 239 (436)
Q Consensus 160 E~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~ 239 (436)
|+|.+.+..+...+..+.+.+.. ..+.+++|||+++......
T Consensus 151 E~h~~~~~~~~~~~~~~~~~l~~--------------------------------------~~~~~~~SAT~~~~~~~~~ 192 (203)
T cd00268 151 EADRMLDMGFEDQIREILKLLPK--------------------------------------DRQTLLFSATMPKEVRDLA 192 (203)
T ss_pred ChHHhhccChHHHHHHHHHhCCc--------------------------------------ccEEEEEeccCCHHHHHHH
Confidence 99998877777777777665432 3478999999998777777
Q ss_pred ccccCCceee
Q 013826 240 QLDLHHPLFL 249 (436)
Q Consensus 240 ~~~~~~~~~~ 249 (436)
...+.+++.+
T Consensus 193 ~~~~~~~~~~ 202 (203)
T cd00268 193 RKFLRNPVRI 202 (203)
T ss_pred HHHCCCCEEe
Confidence 7777776653
No 103
>COG4889 Predicted helicase [General function prediction only]
Probab=99.92 E-value=3.1e-25 Score=208.50 Aligned_cols=376 Identities=16% Similarity=0.206 Sum_probs=219.8
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh
Q 013826 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 83 (436)
++|||||++|++.+.+.+..+...=+.++||+|||++++- +.+.+.. .++|+|+|+.+|..|+.+++..-.. .
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~-----~~iL~LvPSIsLLsQTlrew~~~~~-l 232 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA-----ARILFLVPSISLLSQTLREWTAQKE-L 232 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh-----hheEeecchHHHHHHHHHHHhhccC-c
Confidence 5799999999999999998888888889999999998755 4444433 4899999999999998888765422 2
Q ss_pred CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHh-----hccCCcEEEeCchhHHHHhhcCCCcccCCccEEEE
Q 013826 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE-----LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 158 (436)
Q Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIi 158 (436)
++....++++...... .+.......-.........+... -..+--|+++|++.+...-+... .-+..|++||.
T Consensus 233 ~~~a~aVcSD~kvsrs-~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe-~G~~~fDliic 310 (1518)
T COG4889 233 DFRASAVCSDDKVSRS-AEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQE-AGLDEFDLIIC 310 (1518)
T ss_pred cceeEEEecCcccccc-ccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHH-cCCCCccEEEe
Confidence 4555555555443322 11111111111111122222211 12345799999999977665433 45789999999
Q ss_pred ehhhHHhhHh-------------HhhhHHHHHhhccccccccccccccc--------ccccc---ccccccccccccccc
Q 013826 159 DETDRLLREA-------------YQAWLPTVLQLTRSDNENRFSDASTF--------LPSAF---GSLKTIRRCGVERGF 214 (436)
Q Consensus 159 DE~h~~~~~~-------------~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~~~~~~~~~ 214 (436)
||||+..... ....+....++.++++|..++....- +.++- .-.+...+.++-.++
T Consensus 311 DEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv 390 (1518)
T COG4889 311 DEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAV 390 (1518)
T ss_pred cchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHHH
Confidence 9999843221 13455666677777777766654321 11111 111223334444444
Q ss_pred CCCCccceeeeeeccccccCchhhhccccCCce-eeecCCccccCCccccceeeecc-CcCcHHHHHHHHHhcCCCcEEE
Q 013826 215 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL-FLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQSLGEEKCIV 292 (436)
Q Consensus 215 ~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~lv 292 (436)
........++++++..-.. ........+..|. ...... ....+..+.-... ...+.+....-....+-.++|-
T Consensus 391 ~rdlLTDYKVmvlaVd~~~-i~~~~~~~~~~~~~~L~~dd----~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIa 465 (1518)
T COG4889 391 ERDLLTDYKVMVLAVDKEV-IAGVLQSVLSGPSKGLALDD----VSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIA 465 (1518)
T ss_pred HhhhhccceEEEEEechhh-hhhhhhhhccCcccccchhh----hhhhhhhhhhhhhhccccccccCCcCCchHHHHHHH
Confidence 4444444454444332211 0001111111110 000000 0000000000000 0000000000000001237888
Q ss_pred EcCCchhHHHHHHHHhhh------------cccceeEEEeccccchHHHHHHHH---HHhcCCeeEEEecCCcccccCCC
Q 013826 293 FTSSVESTHRLCTLLNHF------------GELRIKIKEYSGLQRQSVRSKTLK---AFREGKIQVLVSSDAMTRGMDVE 357 (436)
Q Consensus 293 f~~~~~~~~~~~~~l~~~------------~~~~~~~~~~~~~~~~~~r~~~~~---~f~~g~~~vlv~t~~~~~Gidi~ 357 (436)
||.+++...++++.+... .+..+.+.++.|.|+..+|.+.+. .|...+|+||-..+++++|+|+|
T Consensus 466 F~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVP 545 (1518)
T COG4889 466 FAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVP 545 (1518)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCcc
Confidence 999998888887776431 334567778889999999965544 34567899999999999999999
Q ss_pred CCCeEEEecCCCChhHHHHHhhhcccCC-CCceEEEE
Q 013826 358 GVNNVVNYDKPAYIKTYIHRAGRTARAG-QLGRCFTL 393 (436)
Q Consensus 358 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~~-~~g~~~~~ 393 (436)
.++.||++++..|+.+.+|.+||++|.. ++...|++
T Consensus 546 aLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYII 582 (1518)
T COG4889 546 ALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYII 582 (1518)
T ss_pred ccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEE
Confidence 9999999999999999999999999943 23334444
No 104
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=7.4e-25 Score=202.94 Aligned_cols=310 Identities=19% Similarity=0.221 Sum_probs=210.8
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.|-|+|..++..+ .+++++++.|.|.+|||.+|-.++...+... .|++|.+|-++|-+|-++++..-+.+.|
T Consensus 129 ~LDpFQ~~aI~Ci----dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k----QRVIYTSPIKALSNQKYREl~~EF~DVG 200 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCI----DRGESVLVSAHTSAGKTVVAEYAIAMSLREK----QRVIYTSPIKALSNQKYRELLEEFKDVG 200 (1041)
T ss_pred ccCchHhhhhhhh----cCCceEEEEeecCCCcchHHHHHHHHHHHhc----CeEEeeChhhhhcchhHHHHHHHhcccc
Confidence 4678887776643 3589999999999999999988887777653 4899999999999999999988776554
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHH
Q 013826 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 164 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~ 164 (436)
..+|+.+.. .+..-+|+|.+.|.+++-++.. .+..+.-||+||+|-|
T Consensus 201 ----LMTGDVTIn----------------------------P~ASCLVMTTEILRsMLYRGSE-vmrEVaWVIFDEIHYM 247 (1041)
T KOG0948|consen 201 ----LMTGDVTIN----------------------------PDASCLVMTTEILRSMLYRGSE-VMREVAWVIFDEIHYM 247 (1041)
T ss_pred ----eeecceeeC----------------------------CCCceeeeHHHHHHHHHhccch-HhheeeeEEeeeehhc
Confidence 466666432 2237899999999999988763 4788999999999977
Q ss_pred hhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhc--cc
Q 013826 165 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ--LD 242 (436)
Q Consensus 165 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~--~~ 242 (436)
-+..-+-.++...= .+ -...+.+++|||.++..+...+ .-
T Consensus 248 RDkERGVVWEETII---------------ll-----------------------P~~vr~VFLSATiPNA~qFAeWI~~i 289 (1041)
T KOG0948|consen 248 RDKERGVVWEETII---------------LL-----------------------PDNVRFVFLSATIPNARQFAEWICHI 289 (1041)
T ss_pred cccccceeeeeeEE---------------ec-----------------------cccceEEEEeccCCCHHHHHHHHHHH
Confidence 44322111111100 01 1345789999999877554333 21
Q ss_pred cCCceeeecCCccccCCcccccee----------eecc------------------------------------------
Q 013826 243 LHHPLFLTTGETRYKLPERLESYK----------LICE------------------------------------------ 270 (436)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~------------------------------------------ 270 (436)
-.-|..+.....+ +.+.++|. +...
T Consensus 290 hkQPcHVVYTdyR---PTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~ 366 (1041)
T KOG0948|consen 290 HKQPCHVVYTDYR---PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGP 366 (1041)
T ss_pred hcCCceEEeecCC---CCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCC
Confidence 1222221111100 11111110 0000
Q ss_pred CcCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcc------------------------------------cc
Q 013826 271 SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE------------------------------------LR 314 (436)
Q Consensus 271 ~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~------------------------------------~~ 314 (436)
.......+...+-.....++|||+-|+++|+.+|-.+..+.. +.
T Consensus 367 ~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~ 446 (1041)
T KOG0948|consen 367 GDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLR 446 (1041)
T ss_pred CcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHH
Confidence 000111222323333456999999999999999988865421 12
Q ss_pred eeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCC---------CChhHHHHHhhhcccCC
Q 013826 315 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP---------AYIKTYIHRAGRTARAG 385 (436)
Q Consensus 315 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~---------~s~~~~~Q~~GR~~R~~ 385 (436)
-+++++|+++-+--++-+.-.|.+|=+++|++|.+++.|+|+|.-+ |++.... -|-.+|+|+.||+||.|
T Consensus 447 RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkT-VvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG 525 (1041)
T KOG0948|consen 447 RGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKT-VVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRG 525 (1041)
T ss_pred hccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCccee-EEEeeccccCCcceeeecccceEEecccccccC
Confidence 3799999999888888888899999999999999999999999755 4443332 24678999999999999
Q ss_pred CC--ceEEEEecch
Q 013826 386 QL--GRCFTLLHKD 397 (436)
Q Consensus 386 ~~--g~~~~~~~~~ 397 (436)
-+ |-|+++++..
T Consensus 526 ~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 526 IDDRGIVILMIDEK 539 (1041)
T ss_pred CCCCceEEEEecCc
Confidence 76 7777777643
No 105
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=3.3e-23 Score=201.13 Aligned_cols=134 Identities=19% Similarity=0.295 Sum_probs=109.4
Q ss_pred CCCCcc---cchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHH
Q 013826 1 MGISSL---FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 77 (436)
Q Consensus 1 ~~~~~~---~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 77 (436)
+||..| +|+|.+++..+. .+++++..++||+|||+++++|++..+..+ ..++||+||+.|+.|.++.+.
T Consensus 85 ~G~~~p~~~tp~qvQ~I~~i~----l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g----~~v~IVTpTrELA~Qdae~m~ 156 (970)
T PRK12899 85 SGYHQQWDMVPYDVQILGAIA----MHKGFITEMQTGEGKTLTAVMPLYLNALTG----KPVHLVTVNDYLAQRDCEWVG 156 (970)
T ss_pred ccccCCCCCChHHHHHhhhhh----cCCCeEEEeCCCCChHHHHHHHHHHHHhhc----CCeEEEeCCHHHHHHHHHHHH
Confidence 477788 999987766544 478899999999999999999999766543 248999999999999999999
Q ss_pred HhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhH-HHHhhcCCCccc------
Q 013826 78 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRGFTL------ 150 (436)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~l~~~~~~~~------ 150 (436)
.+....|+.+..+.|+.+...+... ..++|+|+||+.| ++++..+. +.+
T Consensus 157 ~L~k~lGLsV~~i~GG~~~~eq~~~-----------------------y~~DIVygTPgRLgfDyLrd~~-~~~~~~~~v 212 (970)
T PRK12899 157 SVLRWLGLTTGVLVSGSPLEKRKEI-----------------------YQCDVVYGTASEFGFDYLRDNS-IATRKEEQV 212 (970)
T ss_pred HHHhhcCCeEEEEeCCCCHHHHHHH-----------------------cCCCEEEECCChhHHHHhhCCC-CCcCHHHhh
Confidence 9998889999999999876665321 1369999999999 99888753 323
Q ss_pred -CCccEEEEehhhHHhh
Q 013826 151 -EHLCYLVVDETDRLLR 166 (436)
Q Consensus 151 -~~~~~iIiDE~h~~~~ 166 (436)
..+.++|+|||+.++-
T Consensus 213 qr~~~~~IIDEADsmLi 229 (970)
T PRK12899 213 GRGFYFAIIDEVDSILI 229 (970)
T ss_pred cccccEEEEechhhhhh
Confidence 3568999999998644
No 106
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.92 E-value=5.4e-23 Score=191.35 Aligned_cols=382 Identities=19% Similarity=0.187 Sum_probs=236.2
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.+++||.+.+..++.-...+-++|+...+|-|||+.. ++++..+..-..-.+.-||++|...|- .|..++++|++ +
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~~~GPfLVi~P~StL~-NW~~Ef~rf~P--~ 242 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKGIPGPFLVIAPKSTLD-NWMNEFKRFTP--S 242 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcCCCCCeEEEeeHhhHH-HHHHHHHHhCC--C
Confidence 6899999999998887777888999999999999875 445545544222233589999997765 58999999988 5
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHH
Q 013826 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 164 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~ 164 (436)
+++.+++|+........+-.. .....+|+|+||++..+--.. +.--+.+++||||+|++
T Consensus 243 l~~~~~~Gdk~eR~~~~r~~~------------------~~~~fdV~iTsYEi~i~dk~~---lk~~~W~ylvIDEaHRi 301 (971)
T KOG0385|consen 243 LNVVVYHGDKEERAALRRDIM------------------LPGRFDVCITSYEIAIKDKSF---LKKFNWRYLVIDEAHRI 301 (971)
T ss_pred cceEEEeCCHHHHHHHHHHhh------------------ccCCCceEeehHHHHHhhHHH---HhcCCceEEEechhhhh
Confidence 788899998754433322211 123569999999998664222 11224689999999997
Q ss_pred hhHhH----------------------hhhHHHHHhhcccccccccccccccccccccc------ccccc----------
Q 013826 165 LREAY----------------------QAWLPTVLQLTRSDNENRFSDASTFLPSAFGS------LKTIR---------- 206 (436)
Q Consensus 165 ~~~~~----------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~---------- 206 (436)
-.... +..+..+-+++...-|..|.+...+ .+++.. ...+.
T Consensus 302 KN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F-~swF~~~~~~~~~e~v~~Lh~vL~pFl 380 (971)
T KOG0385|consen 302 KNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDF-DSWFDFTNCEGDQELVSRLHKVLRPFL 380 (971)
T ss_pred cchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHH-HHHHcccccccCHHHHHHHHhhhhHHH
Confidence 54421 1111222222222223333221111 111111 00000
Q ss_pred ccccccccCCCCccceee-eeeccc----------cccC-----------------chhhhccccCCceeeecCCccccC
Q 013826 207 RCGVERGFKDKPYPRLVK-MVLSAT----------LTQD-----------------PNKLAQLDLHHPLFLTTGETRYKL 258 (436)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~-i~~sat----------~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~ 258 (436)
......++.....|.-.. +..+-+ +..+ +.......+.+|+.+......
T Consensus 381 LRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg--- 457 (971)
T KOG0385|consen 381 LRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPG--- 457 (971)
T ss_pred HHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCC---
Confidence 000111111111111111 111111 0000 001111234455555431111
Q ss_pred CccccceeeeccCcCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHH
Q 013826 259 PERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 336 (436)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f 336 (436)
.+.........+.-|...|..++... .+.++|||..-.....-+-++..-.+ +..+.+.|.++.++|...++.|
T Consensus 458 -~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~---y~ycRiDGSt~~eeR~~aI~~f 533 (971)
T KOG0385|consen 458 -PPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRG---YEYCRLDGSTSHEEREDAIEAF 533 (971)
T ss_pred -CCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcC---ceeEeecCCCCcHHHHHHHHhc
Confidence 11222233334555666677766544 57799999987777777777766555 8899999999999999999999
Q ss_pred hcC---CeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEE--ecch--hHHHHHHHHHHh
Q 013826 337 REG---KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL--LHKD--EVKRFKKLLQKA 409 (436)
Q Consensus 337 ~~g---~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~--~~~~--~~~~~~~~~~~~ 409 (436)
.+. .+-+|++|.+.+.|||+..+++||+|++.|+|+.-.|.+-||.|.|+...|.+| ++.. +..-+++...++
T Consensus 534 n~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL 613 (971)
T KOG0385|consen 534 NAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKL 613 (971)
T ss_pred CCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHh
Confidence 965 356789999999999999999999999999999999999999999998776666 4433 234456666666
Q ss_pred cCCCCCCCCC
Q 013826 410 DNDSCPIHSI 419 (436)
Q Consensus 410 ~~~~~~~~~~ 419 (436)
.-+.+.+++-
T Consensus 614 ~Ld~~VIq~g 623 (971)
T KOG0385|consen 614 RLDKLVIQQG 623 (971)
T ss_pred chhhhhhccC
Confidence 6565555554
No 107
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.92 E-value=8.1e-24 Score=210.35 Aligned_cols=342 Identities=17% Similarity=0.156 Sum_probs=208.5
Q ss_pred ccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCc
Q 013826 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85 (436)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 85 (436)
.++.|..+++.+......+..+++.||||+|||.+++.++............+++++.|++.+.+++++.+..++...+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 47889999888776543333889999999999999988888777662225668999999999999999999988765443
Q ss_pred eEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcc-c--CCccEEEEehhh
Q 013826 86 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT-L--EHLCYLVVDETD 162 (436)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~-~--~~~~~iIiDE~h 162 (436)
.....++.....-.... ........+..+ .....-..+.++|+............+. + -..+.+|+||+|
T Consensus 276 ~~~~~h~~~~~~~~~~~-----~~~~~~~~~~~d--s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h 348 (733)
T COG1203 276 IGKSLHSSSKEPLLLEP-----DQDILLTLTTND--SYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVH 348 (733)
T ss_pred ccccccccccchhhhcc-----ccccceeEEecc--cccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHH
Confidence 33323333322111110 000000000000 0001112455555544444222212121 1 124689999999
Q ss_pred HHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhccc
Q 013826 163 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD 242 (436)
Q Consensus 163 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~ 242 (436)
.+.+......+..++..... .....+++|||+++.........
T Consensus 349 ~~~~~~~~~~l~~~i~~l~~-------------------------------------~g~~ill~SATlP~~~~~~l~~~ 391 (733)
T COG1203 349 LYADETMLAALLALLEALAE-------------------------------------AGVPVLLMSATLPPFLKEKLKKA 391 (733)
T ss_pred hhcccchHHHHHHHHHHHHh-------------------------------------CCCCEEEEecCCCHHHHHHHHHH
Confidence 88666333444444443322 12357999999988766555444
Q ss_pred cCCceeeecCCc-cccCCcccccee--eeccCcCcHHHHHHHH-HhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEE
Q 013826 243 LHHPLFLTTGET-RYKLPERLESYK--LICESKLKPLYLVALL-QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIK 318 (436)
Q Consensus 243 ~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~l~~~l-~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (436)
............ .....+...... ................ ....+++++|.|||+..|.++++.|++.+. .+.
T Consensus 392 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~---~v~ 468 (733)
T COG1203 392 LGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP---KVL 468 (733)
T ss_pred HhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC---CEE
Confidence 333222211111 000000000000 0000000001111111 122467999999999999999999998763 799
Q ss_pred EeccccchHHHHHHHHHHh----cCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCC--CCceEEE
Q 013826 319 EYSGLQRQSVRSKTLKAFR----EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG--QLGRCFT 392 (436)
Q Consensus 319 ~~~~~~~~~~r~~~~~~f~----~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~--~~g~~~~ 392 (436)
.+||.+....|.+.++.+. .+...|+|+|++++.|+|+ +.+++|---.| +.+++||+||++|.| .+|.+++
T Consensus 469 LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v 545 (733)
T COG1203 469 LLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYV 545 (733)
T ss_pred EEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-ccCeeeecCCC--HHHHHHHHHHHhhcccccCCceeE
Confidence 9999999999998887554 4678999999999999999 46665544444 899999999999999 5688888
Q ss_pred Eecch
Q 013826 393 LLHKD 397 (436)
Q Consensus 393 ~~~~~ 397 (436)
+....
T Consensus 546 ~~~~~ 550 (733)
T COG1203 546 YNDEE 550 (733)
T ss_pred eeccc
Confidence 76544
No 108
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.92 E-value=3.2e-22 Score=203.15 Aligned_cols=402 Identities=19% Similarity=0.178 Sum_probs=214.6
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHH-HHHHhh
Q 013826 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD-VFAAIA 80 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~-~~~~~~ 80 (436)
||+ +||.|.+.++.+.+.+..++++++.||||+|||+++++|++.... .+.+++|.|||+.|..|+.. ++..+.
T Consensus 243 ~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~----~~~~vvi~t~t~~Lq~Ql~~~~~~~l~ 317 (850)
T TIGR01407 243 GLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI----TEKPVVISTNTKVLQSQLLEKDIPLLN 317 (850)
T ss_pred CCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc----CCCeEEEEeCcHHHHHHHHHHHHHHHH
Confidence 564 899999998888888888899999999999999999999886554 23479999999999999865 454443
Q ss_pred hhhC--ceEEEeccCcchhH--HHHHhhcccc---------------------------------------ccc----cc
Q 013826 81 PAVG--LSVGLAVGQSSIAD--EISELIKRPK---------------------------------------LEA----GI 113 (436)
Q Consensus 81 ~~~~--~~v~~~~~~~~~~~--~~~~~~~~~~---------------------------------------~~~----~~ 113 (436)
...+ +++..+.|...+.- ...+....+. ... +.
T Consensus 318 ~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~~i~~~~~l~~ 397 (850)
T TIGR01407 318 EILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFAQVRHDGNLSK 397 (850)
T ss_pred HHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHHHhhcCCCCCC
Confidence 3333 66666666654310 0000000000 000 00
Q ss_pred cCC-----chhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHHhhHhH------------hhhHHHH
Q 013826 114 CYD-----PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY------------QAWLPTV 176 (436)
Q Consensus 114 ~~~-----~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~~~~~~------------~~~~~~i 176 (436)
.|. +....+.....++|+|+++..|++.+..... .+...+++||||||++.+... ...+..+
T Consensus 398 ~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~-ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~~~~~~~l~~l 476 (850)
T TIGR01407 398 KDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPE-LFPSFRDLIIDEAHHLPDIAENQLQEELDYADIKYQIDLI 476 (850)
T ss_pred CCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccc-cCCCCCEEEEECcchHHHHHHHHhcceeCHHHHHHHHHHH
Confidence 010 1222233445689999999999887654332 356678999999999865321 1111111
Q ss_pred H------------hhccc---cccccccc--c----------------------ccccccc---ccc-------------
Q 013826 177 L------------QLTRS---DNENRFSD--A----------------------STFLPSA---FGS------------- 201 (436)
Q Consensus 177 ~------------~~~~~---~~~~~~~~--~----------------------~~~~~~~---~~~------------- 201 (436)
. ..... .....+.. . ....... ...
T Consensus 477 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 556 (850)
T TIGR01407 477 GKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKDDFKNIEQSLK 556 (850)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 00000 00000000 0 0000000 000
Q ss_pred ---cccccc-----------cccccccC----CCCcc-ceeeeeeccccccC--chhh-hccccCCceeeecCCccccCC
Q 013826 202 ---LKTIRR-----------CGVERGFK----DKPYP-RLVKMVLSATLTQD--PNKL-AQLDLHHPLFLTTGETRYKLP 259 (436)
Q Consensus 202 ---~~~~~~-----------~~~~~~~~----~~~~~-~~~~i~~sat~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~ 259 (436)
...+.. ...+.+.. ...+. ....+++|||+... ...+ ...++.+..............
T Consensus 557 ~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~ 636 (850)
T TIGR01407 557 EGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYA 636 (850)
T ss_pred cCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHH
Confidence 000000 00000000 00111 12467999999743 2222 223333222111100000101
Q ss_pred ccccceeeeccC----cCcHH---HHHHHHH---hcCCCcEEEEcCCchhHHHHHHHHhhhcc-cceeEEEeccccchHH
Q 013826 260 ERLESYKLICES----KLKPL---YLVALLQ---SLGEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSV 328 (436)
Q Consensus 260 ~~~~~~~~~~~~----~~~~~---~l~~~l~---~~~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~ 328 (436)
.....+...... ..... .+...+. ....+++|||++|.+..+.++..|..... .+..+. ..+.. ..
T Consensus 637 ~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l--~q~~~-~~ 713 (850)
T TIGR01407 637 ENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVL--AQGIN-GS 713 (850)
T ss_pred HcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceEE--ecCCC-cc
Confidence 111111110000 01111 2222221 22457999999999999999999975321 123322 22222 46
Q ss_pred HHHHHHHHhcCCeeEEEecCCcccccCCCCCC--eEEEecCCC------------------------------ChhHHHH
Q 013826 329 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN--NVVNYDKPA------------------------------YIKTYIH 376 (436)
Q Consensus 329 r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~--~vi~~~~~~------------------------------s~~~~~Q 376 (436)
|..+++.|++++..||++|+.+++|+|+|+.. +||+...|. ....+.|
T Consensus 714 r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Q 793 (850)
T TIGR01407 714 RAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQ 793 (850)
T ss_pred HHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHH
Confidence 88899999999999999999999999999844 567766552 1234579
Q ss_pred HhhhcccCCCC-ceEEEEecchhHHHHHHHHHHhcCC
Q 013826 377 RAGRTARAGQL-GRCFTLLHKDEVKRFKKLLQKADND 412 (436)
Q Consensus 377 ~~GR~~R~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (436)
.+||..|...+ |.++++..+.....+.+.+-..-+.
T Consensus 794 a~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp~ 830 (850)
T TIGR01407 794 ALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLPE 830 (850)
T ss_pred hhccccccCCceEEEEEEccccccchHHHHHHHhCCC
Confidence 99999998755 5555544444556664444333333
No 109
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.92 E-value=5.1e-23 Score=184.64 Aligned_cols=198 Identities=18% Similarity=0.175 Sum_probs=143.6
Q ss_pred ceeeeeeccccccCchhhhccccCCceeeecCCccccCCccccceeeeccCc-CcHHHHHHHHHh-cCCCcEEEEcCCch
Q 013826 221 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK-LKPLYLVALLQS-LGEEKCIVFTSSVE 298 (436)
Q Consensus 221 ~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~-~~~~~~lvf~~~~~ 298 (436)
..|.++.||||.+.............++.+.+.-.+ .....+.. ...+.+.++... ..+.++||.+-|++
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLlDP--------~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGNVVEQIIRPTGLLDP--------EIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhccCceeEEeecCCCCCCC--------ceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 467899999996544333332222222222222211 11122222 334444444432 35789999999999
Q ss_pred hHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCC-----CChhH
Q 013826 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP-----AYIKT 373 (436)
Q Consensus 299 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~-----~s~~~ 373 (436)
.|+.+.++|.+.+ +.+.++|++.+.-||.++++.++.|+++|||+.+.+-+|+|+|.+..|.++|.. .|..+
T Consensus 458 mAEdLT~Yl~e~g---ikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~S 534 (663)
T COG0556 458 MAEDLTEYLKELG---IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 534 (663)
T ss_pred HHHHHHHHHHhcC---ceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccch
Confidence 9999999999998 999999999999999999999999999999999999999999999999998865 57889
Q ss_pred HHHHhhhcccCCCCceEEEEecchhHH----------HHHHHHHHhcCCCCCCCCCChhhhhhhhhc
Q 013826 374 YIHRAGRTARAGQLGRCFTLLHKDEVK----------RFKKLLQKADNDSCPIHSIPSSLIESLRPV 430 (436)
Q Consensus 374 ~~Q~~GR~~R~~~~g~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (436)
++|.+||+.|+. +|+++.|.+.--.. +-+..++....+++.++++.+...+.+...
T Consensus 535 LIQtIGRAARN~-~GkvIlYAD~iT~sM~~Ai~ET~RRR~iQ~~yN~~hgItP~ti~K~i~d~l~~~ 600 (663)
T COG0556 535 LIQTIGRAARNV-NGKVILYADKITDSMQKAIDETERRREIQMAYNEEHGITPQTIKKKIRDILDGE 600 (663)
T ss_pred HHHHHHHHhhcc-CCeEEEEchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhhhhh
Confidence 999999999975 89999997653222 122334556677777777766665555443
No 110
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.91 E-value=7.3e-22 Score=189.78 Aligned_cols=320 Identities=23% Similarity=0.291 Sum_probs=197.1
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013826 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
|+ .|+..|.-....+ ..|+++.+.||||.|||...++..+ +.+. ++.++++++||..|+.|..+.+.++..
T Consensus 80 G~-~~ws~QR~WakR~----~rg~SFaiiAPTGvGKTTfg~~~sl--~~a~--kgkr~yii~PT~~Lv~Q~~~kl~~~~e 150 (1187)
T COG1110 80 GF-RPWSAQRVWAKRL----VRGKSFAIIAPTGVGKTTFGLLMSL--YLAK--KGKRVYIIVPTTTLVRQVYERLKKFAE 150 (1187)
T ss_pred CC-CchHHHHHHHHHH----HcCCceEEEcCCCCchhHHHHHHHH--HHHh--cCCeEEEEecCHHHHHHHHHHHHHHHh
Confidence 55 6899996555544 4699999999999999975433322 2222 456899999999999999999999987
Q ss_pred hhC-ceEEE-eccCcchhHHHHHhhccccccccccCCchhHHHhhc-cCCcEEEeCchhHHHHhhcCCCcccCCccEEEE
Q 013826 82 AVG-LSVGL-AVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVV 158 (436)
Q Consensus 82 ~~~-~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIi 158 (436)
..+ ..+.. +++..+...+. +....+. .+.+|+|+|.+-|......-. --+|++|++
T Consensus 151 ~~~~~~~~~~yh~~l~~~eke------------------e~le~i~~gdfdIlitTs~FL~k~~e~L~---~~kFdfifV 209 (1187)
T COG1110 151 DAGSLDVLVVYHSALPTKEKE------------------EALERIESGDFDILITTSQFLSKRFEELS---KLKFDFIFV 209 (1187)
T ss_pred hcCCcceeeeeccccchHHHH------------------HHHHHHhcCCccEEEEeHHHHHhhHHHhc---ccCCCEEEE
Confidence 665 44333 56665544432 2223333 357999999888866555422 236999999
Q ss_pred ehhhHHhhHhHhhhHHHHHhhccccccccccccc-ccccccccccccccccc-----cccccCCCCccceeeeeeccccc
Q 013826 159 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS-TFLPSAFGSLKTIRRCG-----VERGFKDKPYPRLVKMVLSATLT 232 (436)
Q Consensus 159 DE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~sat~~ 232 (436)
|+++.++..+ ..+..++.++..........+. ..+...+.......... .+..........-+.++.|||..
T Consensus 210 DDVDA~Lkas--kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~ 287 (1187)
T COG1110 210 DDVDAILKAS--KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGK 287 (1187)
T ss_pred ccHHHHHhcc--ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCC
Confidence 9999987765 5566666655432111000000 00000000000000000 00001111223346788999987
Q ss_pred cCchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHHhcCCCcEEEEcCC---chhHHHHHHHHhh
Q 013826 233 QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS---VESTHRLCTLLNH 309 (436)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~---~~~~~~~~~~l~~ 309 (436)
+.-....- +....-+..+.....+......|. .......+.++++.... .+|||++. ++.++.++++|+.
T Consensus 288 ~rg~R~~L--fReLlgFevG~~~~~LRNIvD~y~----~~~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~ 360 (1187)
T COG1110 288 PRGSRLKL--FRELLGFEVGSGGEGLRNIVDIYV----ESESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRS 360 (1187)
T ss_pred CCCchHHH--HHHHhCCccCccchhhhheeeeec----cCccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHh
Confidence 65432111 111111222222211222222222 22556667777777644 78999999 9999999999999
Q ss_pred hcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEec----CCcccccCCCC-CCeEEEecCC
Q 013826 310 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS----DAMTRGMDVEG-VNNVVNYDKP 368 (436)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t----~~~~~Gidi~~-~~~vi~~~~~ 368 (436)
+| +++..+|+. ....++.|..|++++||++ +.+.+|+|+|. ++.+|+++.|
T Consensus 361 ~G---i~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 361 HG---INAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred cC---ceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 88 888888873 2567999999999999988 57889999996 7778887766
No 111
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.90 E-value=5.3e-21 Score=186.06 Aligned_cols=122 Identities=22% Similarity=0.288 Sum_probs=107.7
Q ss_pred cHHHHHHHHHh--cCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcc
Q 013826 274 KPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 351 (436)
Q Consensus 274 ~~~~l~~~l~~--~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~ 351 (436)
+.+.+.+.++. ..+.++||||++++.++.+++.|.+.+ +.+..+|++++..+|.++++.|++|+++|||||+.++
T Consensus 427 qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~g---i~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~ 503 (655)
T TIGR00631 427 QVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELG---IKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLR 503 (655)
T ss_pred hHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhc---cceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhc
Confidence 44455555543 246789999999999999999999877 8899999999999999999999999999999999999
Q ss_pred cccCCCCCCeEEEec-----CCCChhHHHHHhhhcccCCCCceEEEEecchhH
Q 013826 352 RGMDVEGVNNVVNYD-----KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399 (436)
Q Consensus 352 ~Gidi~~~~~vi~~~-----~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 399 (436)
+|+|+|++++|++++ .|.+...|+|++||+||. ..|++++|.+....
T Consensus 504 rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~ 555 (655)
T TIGR00631 504 EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITD 555 (655)
T ss_pred CCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCH
Confidence 999999999999988 688999999999999998 58999999887543
No 112
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.4e-22 Score=197.99 Aligned_cols=311 Identities=20% Similarity=0.224 Sum_probs=199.9
Q ss_pred hhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcc
Q 013826 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSS 95 (436)
Q Consensus 16 ~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~ 95 (436)
++...+..++-++|.++||+|||...-..+++.-. ..+.++.+.-|.+--+...++.+..-+ |..++..+|..-
T Consensus 57 ~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~---~~~g~I~~tQPRRlAArsvA~RvAeel---~~~~G~~VGY~i 130 (845)
T COG1643 57 EILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL---GIAGKIGCTQPRRLAARSVAERVAEEL---GEKLGETVGYSI 130 (845)
T ss_pred HHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc---ccCCeEEecCchHHHHHHHHHHHHHHh---CCCcCceeeEEE
Confidence 34444446788999999999999864444443322 133356666688766666666655443 333333333332
Q ss_pred hhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHHhhHhHhhhHHH
Q 013826 96 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175 (436)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~ 175 (436)
..+. .......|-++|.+.|.+.+...+ .++.+++||+||+|.-.-. .+.+-.
T Consensus 131 Rfe~-----------------------~~s~~Trik~mTdGiLlrei~~D~--~Ls~ys~vIiDEaHERSl~--tDilLg 183 (845)
T COG1643 131 RFES-----------------------KVSPRTRIKVMTDGILLREIQNDP--LLSGYSVVIIDEAHERSLN--TDILLG 183 (845)
T ss_pred Eeec-----------------------cCCCCceeEEeccHHHHHHHhhCc--ccccCCEEEEcchhhhhHH--HHHHHH
Confidence 2111 122344899999999999888644 3889999999999964211 111222
Q ss_pred HHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhccccCCceeeecCCcc
Q 013826 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 255 (436)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (436)
++.......+ +.++.+++|||+. ...+...+..-|++. ...+.
T Consensus 184 llk~~~~~rr----------------------------------~DLKiIimSATld--~~rfs~~f~~apvi~-i~GR~ 226 (845)
T COG1643 184 LLKDLLARRR----------------------------------DDLKLIIMSATLD--AERFSAYFGNAPVIE-IEGRT 226 (845)
T ss_pred HHHHHHhhcC----------------------------------CCceEEEEecccC--HHHHHHHcCCCCEEE-ecCCc
Confidence 2221111100 2368899999994 444444443344433 33333
Q ss_pred ccCCccccceeeeccCcC-cHHHHHHHH---HhcCCCcEEEEcCCchhHHHHHHHHhhhc-ccceeEEEeccccchHHHH
Q 013826 256 YKLPERLESYKLICESKL-KPLYLVALL---QSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRS 330 (436)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~-~~~~l~~~l---~~~~~~~~lvf~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~r~ 330 (436)
+++...+. .....+. ....+...+ .....+.+|||.+..++.+..++.|.+.. .....+..+||.++..+..
T Consensus 227 fPVei~Y~---~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~ 303 (845)
T COG1643 227 YPVEIRYL---PEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQV 303 (845)
T ss_pred cceEEEec---CCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHH
Confidence 32222110 1111111 222222222 23357789999999999999999998722 2458899999999999888
Q ss_pred HHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecC------------------CCChhHHHHHhhhcccCCCCceEEE
Q 013826 331 KTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIKTYIHRAGRTARAGQLGRCFT 392 (436)
Q Consensus 331 ~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~~~~g~~~~ 392 (436)
.+++.-..|..+|+++|++.+.++-+|+++.||.-+. +-|-.+..||.||+||.+ +|.||-
T Consensus 304 rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyR 382 (845)
T COG1643 304 RVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYR 382 (845)
T ss_pred hhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEE
Confidence 8777666777779999999999999999999996443 346778899999999986 999999
Q ss_pred EecchhHH
Q 013826 393 LLHKDEVK 400 (436)
Q Consensus 393 ~~~~~~~~ 400 (436)
+++..++.
T Consensus 383 Lyse~~~~ 390 (845)
T COG1643 383 LYSEEDFL 390 (845)
T ss_pred ecCHHHHH
Confidence 99976654
No 113
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.90 E-value=2.1e-22 Score=166.52 Aligned_cols=148 Identities=33% Similarity=0.526 Sum_probs=120.1
Q ss_pred cchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCce
Q 013826 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 86 (436)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 86 (436)
+|+|.++++.+.. ++++++.+|||+|||.++.++++..+... +..++++++|+++|+.|..+.+..++...+.+
T Consensus 1 t~~Q~~~~~~i~~----~~~~li~aptGsGKT~~~~~~~l~~~~~~--~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIIS----GKNVLISAPTGSGKTLAYILPALNRLQEG--KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHT----TSEEEEECSTTSSHHHHHHHHHHHHHHTT--SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHc----CCCEEEECCCCCccHHHHHHHHHhhhccC--CCceEEEEeecccccccccccccccccccccc
Confidence 5899999998873 78899999999999999999999887765 33489999999999999999999998877788
Q ss_pred EEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHHhh
Q 013826 87 VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 166 (436)
Q Consensus 87 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~~~ 166 (436)
+..++++......... .+..+++|+|+||+++...+..... .+.+++++|+||+|.+..
T Consensus 75 ~~~~~~~~~~~~~~~~--------------------~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~ 133 (169)
T PF00270_consen 75 VVLLHGGQSISEDQRE--------------------VLSNQADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSD 133 (169)
T ss_dssp EEEESTTSCHHHHHHH--------------------HHHTTSSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHH
T ss_pred cccccccccccccccc--------------------cccccccccccCcchhhcccccccc-ccccceeeccCccccccc
Confidence 8888888764422221 1234579999999999999987443 667799999999999988
Q ss_pred HhHhhhHHHHHhhcc
Q 013826 167 EAYQAWLPTVLQLTR 181 (436)
Q Consensus 167 ~~~~~~~~~i~~~~~ 181 (436)
..+...+..+.....
T Consensus 134 ~~~~~~~~~i~~~~~ 148 (169)
T PF00270_consen 134 ETFRAMLKSILRRLK 148 (169)
T ss_dssp TTHHHHHHHHHHHSH
T ss_pred ccHHHHHHHHHHHhc
Confidence 767777777776653
No 114
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.90 E-value=3.1e-22 Score=184.84 Aligned_cols=306 Identities=20% Similarity=0.290 Sum_probs=197.3
Q ss_pred hhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcc
Q 013826 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSS 95 (436)
Q Consensus 16 ~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~ 95 (436)
+++..+..++-+++.++||+|||...-..+.+ .+....+++.+.-|.+.-+..+++....- .|...+..+|..-
T Consensus 58 ~il~~ve~nqvlIviGeTGsGKSTQipQyL~e---aG~~~~g~I~~TQPRRVAavslA~RVAeE---~~~~lG~~VGY~I 131 (674)
T KOG0922|consen 58 QILYAVEDNQVLIVIGETGSGKSTQIPQYLAE---AGFASSGKIACTQPRRVAAVSLAKRVAEE---MGCQLGEEVGYTI 131 (674)
T ss_pred HHHHHHHHCCEEEEEcCCCCCccccHhHHHHh---cccccCCcEEeecCchHHHHHHHHHHHHH---hCCCcCceeeeEE
Confidence 34444456788999999999999863322222 22223345667778877766666554432 2333333333332
Q ss_pred hhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHHhhHhHh-hhHH
Q 013826 96 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ-AWLP 174 (436)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~~~~~~~-~~~~ 174 (436)
..++ .......|.++|.+.|++-+...+ .++.+++||+||||.- +.. +.+-
T Consensus 132 RFed-----------------------~ts~~TrikymTDG~LLRE~l~Dp--~LskYsvIIlDEAHER---sl~TDiLl 183 (674)
T KOG0922|consen 132 RFED-----------------------STSKDTRIKYMTDGMLLREILKDP--LLSKYSVIILDEAHER---SLHTDILL 183 (674)
T ss_pred Eecc-----------------------cCCCceeEEEecchHHHHHHhcCC--ccccccEEEEechhhh---hhHHHHHH
Confidence 2221 112234899999999988777644 3889999999999952 211 2222
Q ss_pred HHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhccccCCceeeecCCc
Q 013826 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 254 (436)
Q Consensus 175 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~ 254 (436)
.+++.....+ +.++.+++|||+. ...+-..+..-+++...+.
T Consensus 184 GlLKki~~~R-----------------------------------~~LklIimSATld--a~kfS~yF~~a~i~~i~GR- 225 (674)
T KOG0922|consen 184 GLLKKILKKR-----------------------------------PDLKLIIMSATLD--AEKFSEYFNNAPILTIPGR- 225 (674)
T ss_pred HHHHHHHhcC-----------------------------------CCceEEEEeeeec--HHHHHHHhcCCceEeecCC-
Confidence 2232221111 3357899999994 3333333433344433322
Q ss_pred cccCCccccceeeeccCcCcHHHHHHHHH-------hcCCCcEEEEcCCchhHHHHHHHHhhhccc-----ceeEEEecc
Q 013826 255 RYKLPERLESYKLICESKLKPLYLVALLQ-------SLGEEKCIVFTSSVESTHRLCTLLNHFGEL-----RIKIKEYSG 322 (436)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-------~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~ 322 (436)
..++ .+........+++.+.+. ..+.+-+|||.+..++.+..++.|.+.... ...+..+||
T Consensus 226 ~fPV-------ei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~ 298 (674)
T KOG0922|consen 226 TFPV-------EILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYG 298 (674)
T ss_pred CCce-------eEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecc
Confidence 2211 111122333334333332 235678999999999999999999876211 113567899
Q ss_pred ccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecC------------------CCChhHHHHHhhhcccC
Q 013826 323 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIKTYIHRAGRTARA 384 (436)
Q Consensus 323 ~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~ 384 (436)
.++.++...++..-..|..+|+++|++.+..+-+|++..||.-+. |-|-.+-.||.||+||.
T Consensus 299 aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt 378 (674)
T KOG0922|consen 299 ALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRT 378 (674)
T ss_pred cCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCC
Confidence 999988887777777899999999999999999999998885332 34677889999999998
Q ss_pred CCCceEEEEecchhHHH
Q 013826 385 GQLGRCFTLLHKDEVKR 401 (436)
Q Consensus 385 ~~~g~~~~~~~~~~~~~ 401 (436)
+ +|+||-+++..++..
T Consensus 379 ~-pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 379 G-PGKCYRLYTESAYDK 394 (674)
T ss_pred C-CceEEEeeeHHHHhh
Confidence 6 999999999887744
No 115
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.90 E-value=6.4e-21 Score=190.90 Aligned_cols=400 Identities=16% Similarity=0.132 Sum_probs=216.4
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHH-HHHHHhhhhh
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK-DVFAAIAPAV 83 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~-~~~~~~~~~~ 83 (436)
++|+.|.+....+.+.+..++.+++.|+||+|||+++++|++... .+.+++|++||++|+.|+. +.+..+....
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-----~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~~ 319 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-----DQRQIIVSVPTKILQDQIMAEEVKAIQEVF 319 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-----CCCcEEEEeCcHHHHHHHHHHHHHHHHHhc
Confidence 589999998888888888889999999999999999999977643 3458999999999999994 6666665555
Q ss_pred CceEEEeccCcchhH--HHHHhhccc----------------------ccc---------------------ccccCC--
Q 013826 84 GLSVGLAVGQSSIAD--EISELIKRP----------------------KLE---------------------AGICYD-- 116 (436)
Q Consensus 84 ~~~v~~~~~~~~~~~--~~~~~~~~~----------------------~~~---------------------~~~~~~-- 116 (436)
++.+..+.|...+-- +.......+ ... .+..|.
T Consensus 320 ~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~cp~~ 399 (820)
T PRK07246 320 HIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSSLFY 399 (820)
T ss_pred CCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCCCcc
Confidence 666665555544211 111100000 000 000111
Q ss_pred chhHH---HhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHHhhHh--Hhhh-------HHHHHhhc----
Q 013826 117 PEDVL---QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA--YQAW-------LPTVLQLT---- 180 (436)
Q Consensus 117 ~~~~~---~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~-------~~~i~~~~---- 180 (436)
...-+ +.-....+|+|+++..|+..+.... .+...+.+||||||++.+.. +... ...+....
T Consensus 400 ~~cf~~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 477 (820)
T PRK07246 400 DYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALSGPL 477 (820)
T ss_pred hhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHHHHH
Confidence 01111 2223557999999998888765433 25679999999999986432 1100 11100000
Q ss_pred ----------------------ccc-cc-------------------ccc-------cccc-cccccccc--cccccccc
Q 013826 181 ----------------------RSD-NE-------------------NRF-------SDAS-TFLPSAFG--SLKTIRRC 208 (436)
Q Consensus 181 ----------------------~~~-~~-------------------~~~-------~~~~-~~~~~~~~--~~~~~~~~ 208 (436)
... .. ... .... ....+... ......-+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~~l~ 557 (820)
T PRK07246 478 PLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVTYLN 557 (820)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcceeEEE
Confidence 000 00 000 0000 00000000 00000000
Q ss_pred ccccccC--CCCcc-ceeeeeeccccc--cCchhhhccccCCceeeecCCccccCCccccceeee----ccC----cCcH
Q 013826 209 GVERGFK--DKPYP-RLVKMVLSATLT--QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI----CES----KLKP 275 (436)
Q Consensus 209 ~~~~~~~--~~~~~-~~~~i~~sat~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~ 275 (436)
..+.... ...++ ....+++|||+. +........++......... ...... ....+. ... ....
T Consensus 558 ~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~---~~~~~~-~~~~i~~~~p~~~~~~~~~~~ 633 (820)
T PRK07246 558 SASKAFTHFSQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKIE---KDKKQD-QLVVVDQDMPLVTETSDEVYA 633 (820)
T ss_pred eeeCcHHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecCC---CChHHc-cEEEeCCCCCCCCCCChHHHH
Confidence 0000000 00111 135689999996 22222222333221111110 000010 111110 000 1111
Q ss_pred HHHHHHHHh--cCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccc
Q 013826 276 LYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 353 (436)
Q Consensus 276 ~~l~~~l~~--~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G 353 (436)
..+.+.+.. ..+++++|+++|.+..+.+++.|.... ..+ ...|.... +..++++|++++..||++|+.++||
T Consensus 634 ~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~---~~~-l~Qg~~~~--~~~l~~~F~~~~~~vLlG~~sFwEG 707 (820)
T PRK07246 634 EEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQ---VSH-LAQEKNGT--AYNIKKRFDRGEQQILLGLGSFWEG 707 (820)
T ss_pred HHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcC---CcE-EEeCCCcc--HHHHHHHHHcCCCeEEEecchhhCC
Confidence 122222211 246899999999999999999997542 333 33343222 4568999999888999999999999
Q ss_pred cCCCC--CCeEEEecCCC------------------------------ChhHHHHHhhhcccCCCC-ceEEEEecchhHH
Q 013826 354 MDVEG--VNNVVNYDKPA------------------------------YIKTYIHRAGRTARAGQL-GRCFTLLHKDEVK 400 (436)
Q Consensus 354 idi~~--~~~vi~~~~~~------------------------------s~~~~~Q~~GR~~R~~~~-g~~~~~~~~~~~~ 400 (436)
+|+|+ ...+|+...|- ....+.|.+||..|...+ |.++++..+-..+
T Consensus 708 VD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k 787 (820)
T PRK07246 708 VDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTK 787 (820)
T ss_pred CCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCccccc
Confidence 99984 45566666541 123457999999998755 6555554454556
Q ss_pred HHHHHHHHhcCCCCCCCCCCh
Q 013826 401 RFKKLLQKADNDSCPIHSIPS 421 (436)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~ 421 (436)
.+.+.+-...+...++...+.
T Consensus 788 ~Yg~~~l~sLP~~~~~~~~~~ 808 (820)
T PRK07246 788 SYGKQILASLAEEFLISQQNF 808 (820)
T ss_pred HHHHHHHHhCCCCCccccCCH
Confidence 665555444455555555543
No 116
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.89 E-value=2.9e-23 Score=202.08 Aligned_cols=372 Identities=19% Similarity=0.210 Sum_probs=245.1
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh
Q 013826 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 83 (436)
.+||.||.+.+...+..+..++++|+...+|-|||...+ ..+..+.....-.+..|+++|...+. .|.++|..|.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti-~fl~~l~~~~~~~gpflvvvplst~~-~W~~ef~~w~--- 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTI-TFLSYLFHSLQIHGPFLVVVPLSTIT-AWEREFETWT--- 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHH-HHHHHHHHhhhccCCeEEEeehhhhH-HHHHHHHHHh---
Confidence 479999999999988888889999999999999998754 45555555442334599999997765 4888898886
Q ss_pred CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhH
Q 013826 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 163 (436)
Q Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~ 163 (436)
++++.+++|+......+.+....-. .. .-.-.++++++|++.++.-... +.--...+++|||||+
T Consensus 444 ~mn~i~y~g~~~sr~~i~~ye~~~~--------~~----~~~lkf~~lltTye~~LkDk~~---L~~i~w~~~~vDeahr 508 (1373)
T KOG0384|consen 444 DMNVIVYHGNLESRQLIRQYEFYHS--------SN----TKKLKFNALLTTYEIVLKDKAE---LSKIPWRYLLVDEAHR 508 (1373)
T ss_pred hhceeeeecchhHHHHHHHHHheec--------CC----ccccccceeehhhHHHhccHhh---hccCCcceeeecHHhh
Confidence 6899999999887776654331100 00 0011368999999998653332 2233467999999998
Q ss_pred HhhHh----------------------HhhhHHHHHhhccccccccccccccccccc-------c----ccccccccccc
Q 013826 164 LLREA----------------------YQAWLPTVLQLTRSDNENRFSDASTFLPSA-------F----GSLKTIRRCGV 210 (436)
Q Consensus 164 ~~~~~----------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~~~ 210 (436)
+-... .+..+..+.+++....|..|..+..+..+. + ..+.+......
T Consensus 509 LkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~ 588 (1373)
T KOG0384|consen 509 LKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRL 588 (1373)
T ss_pred cCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHH
Confidence 75332 134445666666666777777776655544 1 11111111122
Q ss_pred ccccCCCCccc-----------eeeeeeccccccCchh-----------------hhccccCCceeeecCCccccCCcc-
Q 013826 211 ERGFKDKPYPR-----------LVKMVLSATLTQDPNK-----------------LAQLDLHHPLFLTTGETRYKLPER- 261 (436)
Q Consensus 211 ~~~~~~~~~~~-----------~~~i~~sat~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~- 261 (436)
.+++.....+. +|+-++-+.+..+... .....+.+|+.+............
T Consensus 589 kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~ 668 (1373)
T KOG0384|consen 589 KKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRD 668 (1373)
T ss_pred HhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhh
Confidence 22222222222 2221222222211111 111223445544332211100000
Q ss_pred ---ccceeeeccCcCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHH
Q 013826 262 ---LESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 336 (436)
Q Consensus 262 ---~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f 336 (436)
-..+.......-|...|..+|... .+.++|||..-+....-+++||...+ ++.-.+.|......|..+++.|
T Consensus 669 ~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~---ypfQRLDGsvrgelRq~AIDhF 745 (1373)
T KOG0384|consen 669 KMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRG---YPFQRLDGSVRGELRQQAIDHF 745 (1373)
T ss_pred cchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcC---CcceeccCCcchHHHHHHHHhc
Confidence 011122222334444555555443 45799999999999999999999887 8899999999999999999999
Q ss_pred hc---CCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCC--ceEEEEecchh
Q 013826 337 RE---GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDE 398 (436)
Q Consensus 337 ~~---g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~ 398 (436)
.+ .++-+|+||.+.+.|||+..+++||+||+.|+|+.-+|...||.|.|++ -.+|-+++...
T Consensus 746 nap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 746 NAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred cCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 85 4688999999999999999999999999999999999999999999988 44666676653
No 117
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.89 E-value=1.9e-22 Score=191.96 Aligned_cols=149 Identities=19% Similarity=0.099 Sum_probs=106.7
Q ss_pred ccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh-C
Q 013826 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV-G 84 (436)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~-~ 84 (436)
|-.||.+.+ ....++++++|.|||.+|||++...++-+.++.. ...-+++++|+++|+.|....+...+... -
T Consensus 512 Pd~WQ~elL----DsvDr~eSavIVAPTSaGKTfisfY~iEKVLRes--D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~ 585 (1330)
T KOG0949|consen 512 PDEWQRELL----DSVDRNESAVIVAPTSAGKTFISFYAIEKVLRES--DSDVVIYVAPTKALVNQVSANVYARFDTKTF 585 (1330)
T ss_pred CcHHHHHHh----hhhhcccceEEEeeccCCceeccHHHHHHHHhhc--CCCEEEEecchHHHhhhhhHHHHHhhccCcc
Confidence 667886554 4445689999999999999999888777777664 55579999999999999999888776221 1
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcC--CCcccCCccEEEEehhh
Q 013826 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT--RGFTLEHLCYLVVDETD 162 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~--~~~~~~~~~~iIiDE~h 162 (436)
.....+.|..+.+.. -...+|+|+|+-|+-+-.++... ...+.+.++++|+||+|
T Consensus 586 ~rg~sl~g~ltqEYs-----------------------inp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH 642 (1330)
T KOG0949|consen 586 LRGVSLLGDLTQEYS-----------------------INPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVH 642 (1330)
T ss_pred ccchhhHhhhhHHhc-----------------------CCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhh
Confidence 222233333322222 22457899999999998887763 23468899999999999
Q ss_pred HHhhHhHhhhHHHHHhhcccc
Q 013826 163 RLLREAYQAWLPTVLQLTRSD 183 (436)
Q Consensus 163 ~~~~~~~~~~~~~i~~~~~~~ 183 (436)
.+....-.-.++.+..+.+++
T Consensus 643 ~iG~~ed~l~~Eqll~li~CP 663 (1330)
T KOG0949|consen 643 LIGNEEDGLLWEQLLLLIPCP 663 (1330)
T ss_pred hccccccchHHHHHHHhcCCC
Confidence 887665555566666655543
No 118
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=4.4e-21 Score=170.66 Aligned_cols=313 Identities=20% Similarity=0.199 Sum_probs=207.0
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh
Q 013826 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 83 (436)
..+||||...+.+.+..-. .++.+|+.|+|+|||++.+.++.. -+.++|+++.+...+.||...|..|+.-.
T Consensus 301 t~iRpYQEksL~KMFGNgR-ARSGiIVLPCGAGKtLVGvTAa~t-------ikK~clvLcts~VSVeQWkqQfk~wsti~ 372 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGR-ARSGIIVLPCGAGKTLVGVTAACT-------IKKSCLVLCTSAVSVEQWKQQFKQWSTIQ 372 (776)
T ss_pred cccCchHHHHHHHHhCCCc-ccCceEEEecCCCCceeeeeeeee-------ecccEEEEecCccCHHHHHHHHHhhcccC
Confidence 4689999988888765321 267889999999999986554442 12369999999999999999999997655
Q ss_pred CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCC-------cccCCccEE
Q 013826 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-------FTLEHLCYL 156 (436)
Q Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~-------~~~~~~~~i 156 (436)
+-.++-.+++... ....++.|+|+|+.++.+--.+... +.-...+++
T Consensus 373 d~~i~rFTsd~Ke--------------------------~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGll 426 (776)
T KOG1123|consen 373 DDQICRFTSDAKE--------------------------RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLL 426 (776)
T ss_pred ccceEEeeccccc--------------------------cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeE
Confidence 5666666666532 2334668999999887553332211 123457899
Q ss_pred EEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCch
Q 013826 157 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 236 (436)
Q Consensus 157 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 236 (436)
++||+|.+.+..|...+..+..++ ++.++||+.+...
T Consensus 427 llDEVHvvPA~MFRRVlsiv~aHc-------------------------------------------KLGLTATLvREDd 463 (776)
T KOG1123|consen 427 LLDEVHVVPAKMFRRVLSIVQAHC-------------------------------------------KLGLTATLVREDD 463 (776)
T ss_pred EeehhccchHHHHHHHHHHHHHHh-------------------------------------------hccceeEEeeccc
Confidence 999999999999888887777766 3567777765544
Q ss_pred hhhcccc-CCceeeecCCccc-----------------cCC--------cccc-ceeeeccCcCcHHHHHHHHHhc--CC
Q 013826 237 KLAQLDL-HHPLFLTTGETRY-----------------KLP--------ERLE-SYKLICESKLKPLYLVALLQSL--GE 287 (436)
Q Consensus 237 ~~~~~~~-~~~~~~~~~~~~~-----------------~~~--------~~~~-~~~~~~~~~~~~~~l~~~l~~~--~~ 287 (436)
.+..+.+ ..|..++..--+. -.+ +..+ ..-+...+..|...-.-+++.+ ++
T Consensus 464 KI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~Rg 543 (776)
T KOG1123|consen 464 KITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRG 543 (776)
T ss_pred cccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcC
Confidence 4333211 1111111000000 000 0000 0011111223333222222222 67
Q ss_pred CcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcC-CeeEEEecCCcccccCCCCCCeEEEec
Q 013826 288 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVLVSSDAMTRGMDVEGVNNVVNYD 366 (436)
Q Consensus 288 ~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~t~~~~~Gidi~~~~~vi~~~ 366 (436)
.|+|||..++-.....|-.|.+ ..+.|..+..||..+++.|.-+ .++-++.+.+....+|+|.++++|..+
T Consensus 544 DKiIVFsDnvfALk~YAikl~K--------pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQIS 615 (776)
T KOG1123|consen 544 DKIIVFSDNVFALKEYAIKLGK--------PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQIS 615 (776)
T ss_pred CeEEEEeccHHHHHHHHHHcCC--------ceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEc
Confidence 8999999998887777776643 3477899999999999999954 678888889999999999999999887
Q ss_pred CC-CChhHHHHHhhhcccCCC------CceEEEEecchhHHH
Q 013826 367 KP-AYIKTYIHRAGRTARAGQ------LGRCFTLLHKDEVKR 401 (436)
Q Consensus 367 ~~-~s~~~~~Q~~GR~~R~~~------~g~~~~~~~~~~~~~ 401 (436)
+. .|..+-.||.||+.|..+ +...|.+++.+-.++
T Consensus 616 SH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM 657 (776)
T KOG1123|consen 616 SHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEM 657 (776)
T ss_pred ccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHH
Confidence 65 578889999999999532 134555555554444
No 119
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.87 E-value=4.6e-19 Score=174.08 Aligned_cols=134 Identities=22% Similarity=0.312 Sum_probs=114.3
Q ss_pred cHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcc
Q 013826 274 KPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 351 (436)
Q Consensus 274 ~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~ 351 (436)
+.+.+...++.. .+.++||||++.+.++.+++.|.+.+ +.+..+|++++..+|..+++.|+.|+..|+|+|+.++
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~g---i~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~ 507 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELG---IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLR 507 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcc---eeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHh
Confidence 344455544432 46789999999999999999999877 8999999999999999999999999999999999999
Q ss_pred cccCCCCCCeEEEecC-----CCChhHHHHHhhhcccCCCCceEEEEecc---------hhHHHHHHHHHHhcC
Q 013826 352 RGMDVEGVNNVVNYDK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHK---------DEVKRFKKLLQKADN 411 (436)
Q Consensus 352 ~Gidi~~~~~vi~~~~-----~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~ 411 (436)
+|+|+|++++|++++. |.+...|+||+||+||. ..|.+++|++. .+..+++++...++.
T Consensus 508 rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 580 (652)
T PRK05298 508 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNE 580 (652)
T ss_pred CCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999875 67899999999999996 68999999984 455666766665543
No 120
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=3.9e-21 Score=187.29 Aligned_cols=127 Identities=20% Similarity=0.234 Sum_probs=108.1
Q ss_pred eccCcCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEE
Q 013826 268 ICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 345 (436)
Q Consensus 268 ~~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 345 (436)
......|...+.+.+... .+.++||||+|++.++.+++.|...+ ++...+|+ ...+|+..+.+|..+...|+|
T Consensus 577 y~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~g---I~h~vLna--kq~~REa~Iia~AG~~g~VtI 651 (1025)
T PRK12900 577 YKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKR---IAHNVLNA--KQHDREAEIVAEAGQKGAVTI 651 (1025)
T ss_pred ecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcC---CCceeecC--CHHHhHHHHHHhcCCCCeEEE
Confidence 344455777777777543 57799999999999999999999887 88888886 566899999999999999999
Q ss_pred ecCCcccccCCC---CCC-----eEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhH
Q 013826 346 SSDAMTRGMDVE---GVN-----NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 399 (436)
Q Consensus 346 ~t~~~~~Gidi~---~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 399 (436)
+|++.++|+|++ ++. +||....|.|...+.|++||+||.|.+|.+.+|++..|.
T Consensus 652 ATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 652 ATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred eccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 999999999999 343 347788889999999999999999999999999987664
No 121
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=1e-19 Score=172.71 Aligned_cols=353 Identities=17% Similarity=0.146 Sum_probs=210.9
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.|++.|.-....+. +.-+..+.||.|||+++.++++-.... +..+.+++|+..|+.|-++++..++..+|
T Consensus 78 r~ydvQlig~l~Ll------~G~VaEM~TGEGKTLvA~l~a~l~AL~----G~~VhvvT~NdyLA~RDae~m~~ly~~LG 147 (764)
T PRK12326 78 RPFDVQLLGALRLL------AGDVIEMATGEGKTLAGAIAAAGYALQ----GRRVHVITVNDYLARRDAEWMGPLYEALG 147 (764)
T ss_pred CcchHHHHHHHHHh------CCCcccccCCCCHHHHHHHHHHHHHHc----CCCeEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence 47778876655443 334789999999999998887765544 44799999999999999999999999999
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhH-HHHhhcCC-----CcccCCccEEEE
Q 013826 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLCYLVV 158 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~l~~~~-----~~~~~~~~~iIi 158 (436)
+.+.++.++.+..... ....++|.++|...+ ++.|+.+. ......+.+.||
T Consensus 148 Lsvg~i~~~~~~~err-----------------------~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIV 204 (764)
T PRK12326 148 LTVGWITEESTPEERR-----------------------AAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAII 204 (764)
T ss_pred CEEEEECCCCCHHHHH-----------------------HHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeee
Confidence 9999999887654432 223469999998776 33333221 123566889999
Q ss_pred ehhhHHhhHh---------------HhhhHHHHHhhccccc---------------------------cccccccc-ccc
Q 013826 159 DETDRLLREA---------------YQAWLPTVLQLTRSDN---------------------------ENRFSDAS-TFL 195 (436)
Q Consensus 159 DE~h~~~~~~---------------~~~~~~~i~~~~~~~~---------------------------~~~~~~~~-~~~ 195 (436)
||++.++-+. .+..+..+...+.... .+.+.... ...
T Consensus 205 DEvDSiLIDeArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~ 284 (764)
T PRK12326 205 DEADSVLVDEALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTT 284 (764)
T ss_pred cchhhheeccccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHH
Confidence 9999853321 2222222332222110 00000000 000
Q ss_pred cc----cccccc-------cccccc---cccccCCCCccc--------------------------------------ee
Q 013826 196 PS----AFGSLK-------TIRRCG---VERGFKDKPYPR--------------------------------------LV 223 (436)
Q Consensus 196 ~~----~~~~~~-------~~~~~~---~~~~~~~~~~~~--------------------------------------~~ 223 (436)
.. .+.+.. .+-..+ +...+.....+. .+
T Consensus 285 ~~~i~~AL~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~k 364 (764)
T PRK12326 285 LTQVNVALHAHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPT 364 (764)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcch
Confidence 00 000000 000000 000000000000 01
Q ss_pred eeeeccccccCchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHH-Hhc-CCCcEEEEcCCchhHH
Q 013826 224 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL-QSL-GEEKCIVFTSSVESTH 301 (436)
Q Consensus 224 ~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~-~~~~~lvf~~~~~~~~ 301 (436)
...+|+|......++...+-.+...+++.. +....+. .-.+......|...+.+.. +.+ .+.++||.+.|++..+
T Consensus 365 LsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnk--p~~R~d~-~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE 441 (764)
T PRK12326 365 VCGMTGTAVAAGEQLRQFYDLGVSVIPPNK--PNIREDE-ADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESE 441 (764)
T ss_pred heeecCCChhHHHHHHHHhCCcEEECCCCC--CceeecC-CCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHH
Confidence 346677765444444433333322222221 1111111 1122233344544444443 332 5678999999999999
Q ss_pred HHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCC---------------CeEEEec
Q 013826 302 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV---------------NNVVNYD 366 (436)
Q Consensus 302 ~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~---------------~~vi~~~ 366 (436)
.++..|.+.+ ++.-+++......|...+.++-+. -.|.|+|+|.++|.|+.=- =+||...
T Consensus 442 ~ls~~L~~~g---I~h~vLNAk~~~~EA~IIa~AG~~--gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTe 516 (764)
T PRK12326 442 ELAERLRAAG---VPAVVLNAKNDAEEARIIAEAGKY--GAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTG 516 (764)
T ss_pred HHHHHHHhCC---CcceeeccCchHhHHHHHHhcCCC--CcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEecc
Confidence 9999999877 777777776554443333333333 3799999999999999721 1577788
Q ss_pred CCCChhHHHHHhhhcccCCCCceEEEEecchh
Q 013826 367 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398 (436)
Q Consensus 367 ~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 398 (436)
.+.|...-.|..||+||.|.+|.+.+|++-.|
T Consensus 517 rheSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 517 RHRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred CCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 88999999999999999999999999987665
No 122
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=2e-20 Score=175.16 Aligned_cols=368 Identities=18% Similarity=0.137 Sum_probs=220.3
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh
Q 013826 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 83 (436)
..|.+||++.++..++-..++...|+-..+|-|||... ++.+..+...+.--.++|||||. .+..||..+|.+|.+.
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~- 280 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPP- 280 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcc-
Confidence 46899999999998887777888999999999999864 44555555442223579999998 6788999999999884
Q ss_pred CceEEEeccCcchhHHHHHhhccccccccccCC-chhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhh
Q 013826 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYD-PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 162 (436)
Q Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h 162 (436)
.+|.++++..+....- .....+. .....+.....-.|+++|++.+.-.- ..+.-...+++|+||.|
T Consensus 281 -~rv~ilh~t~s~~r~~---------~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~---d~l~~~~W~y~ILDEGH 347 (923)
T KOG0387|consen 281 -FRVFILHGTGSGARYD---------ASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG---DDLLGILWDYVILDEGH 347 (923)
T ss_pred -eEEEEEecCCcccccc---------cchhhhhhhhhheeeecccCcEEEEehhhhcccC---cccccccccEEEecCcc
Confidence 6777777766521100 0000000 00011111223479999998874321 11233357899999999
Q ss_pred HHhhHhH----------------------hhhHHHHHhhccccccccccccccccccc---cccc---------------
Q 013826 163 RLLREAY----------------------QAWLPTVLQLTRSDNENRFSDASTFLPSA---FGSL--------------- 202 (436)
Q Consensus 163 ~~~~~~~----------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~--------------- 202 (436)
.+-.+.. +..+..+.+++-.-.|+..+....+.... +...
T Consensus 348 ~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~ayk 427 (923)
T KOG0387|consen 348 RIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYK 427 (923)
T ss_pred cccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHH
Confidence 8643321 22222333222222222222222211110 0000
Q ss_pred ----------ccccccccccccC-CCCccceeeeeeccccccCchhhh------------------------ccccCCce
Q 013826 203 ----------KTIRRCGVERGFK-DKPYPRLVKMVLSATLTQDPNKLA------------------------QLDLHHPL 247 (436)
Q Consensus 203 ----------~~~~~~~~~~~~~-~~~~~~~~~i~~sat~~~~~~~~~------------------------~~~~~~~~ 247 (436)
+.+.+-....-.. ..+...-++++++-|......... ..-+.+|.
T Consensus 428 ca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPd 507 (923)
T KOG0387|consen 428 CAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPD 507 (923)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcc
Confidence 0000000010111 223333445666666543211100 01111222
Q ss_pred eeecCCccccCCccccceeeeccCcCcHHHHHHHHHh--cCCCcEEEEcCCchhHHHHHHHHhh-hcccceeEEEecccc
Q 013826 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGLQ 324 (436)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~ 324 (436)
........ .... ..+.......-|...+..++.. ..+.++|+|..++....-+...|.. .+ +.+..+.|..
T Consensus 508 ll~~~~~~--~~~~-~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~---ysylRmDGtT 581 (923)
T KOG0387|consen 508 LLDRRDED--EKQG-PDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKG---YSYLRMDGTT 581 (923)
T ss_pred cccCcccc--cccC-CCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCC---ceEEEecCCC
Confidence 22111000 0000 0000111223355555555432 1356999999999999999888883 44 8899999999
Q ss_pred chHHHHHHHHHHhcCC--eeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEE
Q 013826 325 RQSVRSKTLKAFREGK--IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393 (436)
Q Consensus 325 ~~~~r~~~~~~f~~g~--~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 393 (436)
+...|..+++.|.+++ .-+|++|.+.+-|+|+.+++.||+||+.|+|+.-.|..-|+-|.|++..|.+|
T Consensus 582 ~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 582 PAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred ccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 9999999999999875 34678999999999999999999999999999999999999999998666665
No 123
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=9.6e-21 Score=177.11 Aligned_cols=318 Identities=17% Similarity=0.225 Sum_probs=186.4
Q ss_pred hhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh-cCCccEEEE-cCCHHHHHHHHHHHHHhhhhhCceEEEeccC
Q 013826 16 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVV-LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ 93 (436)
Q Consensus 16 ~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~~lil-~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~ 93 (436)
.+++++..+.-+|||+.||||||...-..+++.=.... ..++-.+-+ -|.+.-+.-++.....-+...|-.|.....-
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRf 342 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRF 342 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEe
Confidence 35555556788999999999999863333332211110 122334444 5776655555544433322223223222111
Q ss_pred cchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHH--hhHhHhh
Q 013826 94 SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL--LREAYQA 171 (436)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~--~~~~~~~ 171 (436)
.. .......|.+||.+.|++-++. ++.++.++.||+||||.- ..+-...
T Consensus 343 d~---------------------------ti~e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHERSvnTDILiG 393 (1172)
T KOG0926|consen 343 DG---------------------------TIGEDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHERSVNTDILIG 393 (1172)
T ss_pred cc---------------------------ccCCCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhccchHHHHHH
Confidence 10 1223348999999999998875 577999999999999963 2223344
Q ss_pred hHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchh-hhccccCCceeee
Q 013826 172 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK-LAQLDLHHPLFLT 250 (436)
Q Consensus 172 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~-~~~~~~~~~~~~~ 250 (436)
.+.+++.+...... ...-...++.|++|||+.-.... --.++-..|.++.
T Consensus 394 mLSRiV~LR~k~~k-----------------------------e~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlik 444 (1172)
T KOG0926|consen 394 MLSRIVPLRQKYYK-----------------------------EQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIK 444 (1172)
T ss_pred HHHHHHHHHHHHhh-----------------------------hhcccCceeEEEEeeeEEecccccCceecCCCCceee
Confidence 45555544322111 11112456889999999643222 2222222233333
Q ss_pred cCCccccCCccccceeeeccCcCcHHHHHHHHH-------hcCCCcEEEEcCCchhHHHHHHHHhhhccc----------
Q 013826 251 TGETRYKLPERLESYKLICESKLKPLYLVALLQ-------SLGEEKCIVFTSSVESTHRLCTLLNHFGEL---------- 313 (436)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-------~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~---------- 313 (436)
...+.++ ..+........+++.+..+ +.+.+.+|||+....+..++++.|+.....
T Consensus 445 VdARQfP-------VsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~ 517 (1172)
T KOG0926|consen 445 VDARQFP-------VSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKN 517 (1172)
T ss_pred eecccCc-------eEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhh
Confidence 2222221 1222222333355555543 447899999999999999999999764110
Q ss_pred --------------------------------------------------------------------------------
Q 013826 314 -------------------------------------------------------------------------------- 313 (436)
Q Consensus 314 -------------------------------------------------------------------------------- 313 (436)
T Consensus 518 ~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~ 597 (1172)
T KOG0926|consen 518 VKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGK 597 (1172)
T ss_pred hhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhcc
Confidence
Q ss_pred ------ceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEec--------CCCCh--------
Q 013826 314 ------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD--------KPAYI-------- 371 (436)
Q Consensus 314 ------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~--------~~~s~-------- 371 (436)
...|..+++-++.....+++..-..|..-++|+|++.+..+.+|++..||..+ .-.++
T Consensus 598 ~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wi 677 (1172)
T KOG0926|consen 598 GKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWI 677 (1172)
T ss_pred CCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEee
Confidence 00223333333333333444444456667899999999999999999999643 33333
Q ss_pred --hHHHHHhhhcccCCCCceEEEEecchhH
Q 013826 372 --KTYIHRAGRTARAGQLGRCFTLLHKDEV 399 (436)
Q Consensus 372 --~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 399 (436)
.+--||.||+||.| +|.||-+++..-+
T Consensus 678 SkASadQRAGRAGRtg-pGHcYRLYSSAVf 706 (1172)
T KOG0926|consen 678 SKASADQRAGRAGRTG-PGHCYRLYSSAVF 706 (1172)
T ss_pred eccccchhccccCCCC-CCceeehhhhHHh
Confidence 34469999999997 9999999986544
No 124
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.85 E-value=7.3e-19 Score=179.49 Aligned_cols=121 Identities=18% Similarity=0.252 Sum_probs=87.4
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhccc-ceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCC--CCeE
Q 013826 286 GEEKCIVFTSSVESTHRLCTLLNHFGEL-RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG--VNNV 362 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~--~~~v 362 (436)
.++++||+++|.+..+.+++.|++.... ++.+ +.-+++...|..+++.|++++-.||++|+.++||||+|+ +++|
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~l--l~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~v 828 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVL--LAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCL 828 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceE--EecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEE
Confidence 4679999999999999999999764321 1222 222333345788999999988899999999999999997 5788
Q ss_pred EEecCCC------------------------------ChhHHHHHhhhcccCCCC-ceEEEEecchhHHHHHHHHHH
Q 013826 363 VNYDKPA------------------------------YIKTYIHRAGRTARAGQL-GRCFTLLHKDEVKRFKKLLQK 408 (436)
Q Consensus 363 i~~~~~~------------------------------s~~~~~Q~~GR~~R~~~~-g~~~~~~~~~~~~~~~~~~~~ 408 (436)
|+...|. ....+.|.+||..|...+ |.++++..+-..+.+.+.+-.
T Consensus 829 iI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~ 905 (928)
T PRK08074 829 VIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLE 905 (928)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHH
Confidence 8877652 122357999999998755 655555445456667555533
No 125
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=1.3e-19 Score=166.36 Aligned_cols=302 Identities=21% Similarity=0.259 Sum_probs=195.5
Q ss_pred hCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh-c-CCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcc
Q 013826 18 IGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-V-RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSS 95 (436)
Q Consensus 18 ~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~-~-~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~ 95 (436)
+.++..++-.||.+.||||||...- +.+...+ - .+.++-+.-|.+.-+.-++.... ..+|+..+.-+|..-
T Consensus 274 l~av~e~QVLiI~GeTGSGKTTQiP----QyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA---~EMgvkLG~eVGYsI 346 (902)
T KOG0923|consen 274 LKAVKEHQVLIIVGETGSGKTTQIP----QYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVA---EEMGVKLGHEVGYSI 346 (902)
T ss_pred HHHHHhCcEEEEEcCCCCCcccccc----HHHHhcccccCCceEeecCcchHHHHHHHHHHH---HHhCcccccccceEE
Confidence 3334457889999999999998632 2333322 1 23346666688777666555443 334555554455443
Q ss_pred hhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHHhhHhHh-hhHH
Q 013826 96 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ-AWLP 174 (436)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~~~~~~~-~~~~ 174 (436)
...+. .....-+-++|.++|++-+...+ .+.++++|||||||.- ..+ +.+.
T Consensus 347 RFEdc-----------------------TSekTvlKYMTDGmLlREfL~ep--dLasYSViiiDEAHER---TL~TDILf 398 (902)
T KOG0923|consen 347 RFEDC-----------------------TSEKTVLKYMTDGMLLREFLSEP--DLASYSVIIVDEAHER---TLHTDILF 398 (902)
T ss_pred Eeccc-----------------------cCcceeeeeecchhHHHHHhccc--cccceeEEEeehhhhh---hhhhhHHH
Confidence 33321 12234688999999988766533 4889999999999953 211 2233
Q ss_pred HHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhccccCCceeeecCCc
Q 013826 175 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 254 (436)
Q Consensus 175 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~ 254 (436)
.++.-....+ +.++.++.|||+. ...+-..+..-|++.. ..+
T Consensus 399 gLvKDIar~R-----------------------------------pdLKllIsSAT~D--AekFS~fFDdapIF~i-PGR 440 (902)
T KOG0923|consen 399 GLVKDIARFR-----------------------------------PDLKLLISSATMD--AEKFSAFFDDAPIFRI-PGR 440 (902)
T ss_pred HHHHHHHhhC-----------------------------------CcceEEeeccccC--HHHHHHhccCCcEEec-cCc
Confidence 3333222211 4568899999984 3344433433444433 333
Q ss_pred cccCCccccceeeeccCcCcHHHHHHHHH-------hcCCCcEEEEcCCchhHHHHHHHHhhh----c--ccceeEEEec
Q 013826 255 RYKLPERLESYKLICESKLKPLYLVALLQ-------SLGEEKCIVFTSSVESTHRLCTLLNHF----G--ELRIKIKEYS 321 (436)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-------~~~~~~~lvf~~~~~~~~~~~~~l~~~----~--~~~~~~~~~~ 321 (436)
++++ .+......-.+++.+.+. ..+.+-+|||....++.+...+.|.+. | ...+-++.++
T Consensus 441 RyPV-------di~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiY 513 (902)
T KOG0923|consen 441 RYPV-------DIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIY 513 (902)
T ss_pred ccce-------eeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeecc
Confidence 3222 222222333344444332 225678999999999888877777654 2 1335688889
Q ss_pred cccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecC------------------CCChhHHHHHhhhccc
Q 013826 322 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIKTYIHRAGRTAR 383 (436)
Q Consensus 322 ~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R 383 (436)
+.++......+++.--.|..+|+++|++.+..+.++++..||.-+. |-|-++..||.||+||
T Consensus 514 aNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGR 593 (902)
T KOG0923|consen 514 ANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGR 593 (902)
T ss_pred ccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCC
Confidence 9999988887777777899999999999999999999999985332 3466778999999999
Q ss_pred CCCCceEEEEecchhHH
Q 013826 384 AGQLGRCFTLLHKDEVK 400 (436)
Q Consensus 384 ~~~~g~~~~~~~~~~~~ 400 (436)
.| +|+|+-+++...+.
T Consensus 594 tg-PGKCfRLYt~~aY~ 609 (902)
T KOG0923|consen 594 TG-PGKCFRLYTAWAYE 609 (902)
T ss_pred CC-CCceEEeechhhhh
Confidence 97 99999999865543
No 126
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.84 E-value=5.8e-19 Score=169.34 Aligned_cols=365 Identities=19% Similarity=0.099 Sum_probs=198.1
Q ss_pred CcccchhHHHHHhhhCCCCC------CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCC-----ccEEEEcCCHHHHHHH
Q 013826 4 SSLFPVQVAVWQETIGPGLF------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-----LRALVVLPTRDLALQV 72 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~------~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~-----~~~lil~P~~~l~~q~ 72 (436)
..++|||.|.++-++..+.. ...+|+.-.+|+|||+..+..++..+... +. .+.|||+|. .|+..|
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~--P~~~~~~~k~lVV~P~-sLv~nW 313 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQF--PQAKPLINKPLVVAPS-SLVNNW 313 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhC--cCccccccccEEEccH-HHHHHH
Confidence 36899999999988876532 24588899999999998877777766665 44 689999998 788999
Q ss_pred HHHHHHhhhhhCceEEEeccCcch-hHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccC
Q 013826 73 KDVFAAIAPAVGLSVGLAVGQSSI-ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLE 151 (436)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~ 151 (436)
.++|.+|.....+....+.+.... ......+. ......-..-|++.+++.+...... +...
T Consensus 314 kkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil---------------~~~~~~~~~~vli~sye~~~~~~~~---il~~ 375 (776)
T KOG0390|consen 314 KKEFGKWLGNHRINPLDFYSTKKSSWIKLKSIL---------------FLGYKQFTTPVLIISYETASDYCRK---ILLI 375 (776)
T ss_pred HHHHHHhccccccceeeeecccchhhhhhHHHH---------------HhhhhheeEEEEeccHHHHHHHHHH---HhcC
Confidence 999999976433455555554432 00000000 0001112236889999999766554 4567
Q ss_pred CccEEEEehhhHHhhHh----------------------HhhhHHHHHhhcccccccccccccccccccccccccccc-c
Q 013826 152 HLCYLVVDETDRLLREA----------------------YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR-C 208 (436)
Q Consensus 152 ~~~~iIiDE~h~~~~~~----------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 208 (436)
.++++|+||.|..-... ++..+..+++.+...+|........+...........+. .
T Consensus 376 ~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~ 455 (776)
T KOG0390|consen 376 RPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDAD 455 (776)
T ss_pred CCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCC
Confidence 89999999999752221 233334444444444444333332222211100000000 0
Q ss_pred ccccccCC-------CCccceeeeeecc-----ccccCchhhhccccCCceee------------ecCCccccCCcc--c
Q 013826 209 GVERGFKD-------KPYPRLVKMVLSA-----TLTQDPNKLAQLDLHHPLFL------------TTGETRYKLPER--L 262 (436)
Q Consensus 209 ~~~~~~~~-------~~~~~~~~i~~sa-----t~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~--~ 262 (436)
..++.... ........+-.++ -++...+.. ..+..+... ............ +
T Consensus 456 ~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~v--v~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L 533 (776)
T KOG0390|consen 456 ASEEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYV--VFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKL 533 (776)
T ss_pred cchhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEE--EEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHH
Confidence 00000000 0000000000011 000000000 000000000 000000000000 0
Q ss_pred c--------c-----------------------eeeeccC---cCcHHHHHHHHHhcCCCcEEEEcCC---chhHHHHHH
Q 013826 263 E--------S-----------------------YKLICES---KLKPLYLVALLQSLGEEKCIVFTSS---VESTHRLCT 305 (436)
Q Consensus 263 ~--------~-----------------------~~~~~~~---~~~~~~l~~~l~~~~~~~~lvf~~~---~~~~~~~~~ 305 (436)
. . +...... ..+.-.|..++.. ...++++|+.- +.+...+.+
T Consensus 534 ~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~-~~ek~~~~~v~Isny~~tldl~e 612 (776)
T KOG0390|consen 534 KKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEV-IREKLLVKSVLISNYTQTLDLFE 612 (776)
T ss_pred HHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHH-HhhhcceEEEEeccHHHHHHHHH
Confidence 0 0 0000000 1112222222211 12344444433 333333333
Q ss_pred HHhhhcccceeEEEeccccchHHHHHHHHHHhcCC---eeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcc
Q 013826 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK---IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 382 (436)
Q Consensus 306 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~ 382 (436)
.+... .+..+..++|.++..+|+.+++.|.+-. .-+|.++-+.++|+|+-+++.+|++|++|+|+.-.|.++|+-
T Consensus 613 ~~~~~--~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~ 690 (776)
T KOG0390|consen 613 QLCRW--RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAW 690 (776)
T ss_pred HHHhh--cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhc
Confidence 33222 2589999999999999999999999642 345677788999999999999999999999999999999999
Q ss_pred cCCCCceEEEEe
Q 013826 383 RAGQLGRCFTLL 394 (436)
Q Consensus 383 R~~~~g~~~~~~ 394 (436)
|.|++..|++|-
T Consensus 691 RdGQKk~v~iYr 702 (776)
T KOG0390|consen 691 RDGQKKPVYIYR 702 (776)
T ss_pred cCCCcceEEEEE
Confidence 999999999984
No 127
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=1.7e-19 Score=175.36 Aligned_cols=352 Identities=17% Similarity=0.196 Sum_probs=206.5
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.+++.|.- ..+.-.+.-|..+.||.|||+++.++++-.... +..+.+++|+..|+.|-++++..++...|
T Consensus 82 ~~ydVQli------Gg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~----G~~VhvvT~ndyLA~RD~e~m~~l~~~lG 151 (913)
T PRK13103 82 RHFDVQLI------GGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALS----GKGVHVVTVNDYLARRDANWMRPLYEFLG 151 (913)
T ss_pred CcchhHHH------hhhHhccCccccccCCCCChHHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 46666633 333335667999999999999998888755443 44799999999999999999999999999
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhH-HHHhhcCCC-----cccCCccEEEE
Q 013826 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG-----FTLEHLCYLVV 158 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~l~~~~~-----~~~~~~~~iIi 158 (436)
+.+.++.++.+...... ...++|+++|...+ ++.|..+.. .....+.++||
T Consensus 152 l~v~~i~~~~~~~err~-----------------------~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIV 208 (913)
T PRK13103 152 LSVGIVTPFQPPEEKRA-----------------------AYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVI 208 (913)
T ss_pred CEEEEECCCCCHHHHHH-----------------------HhcCCEEEEcccccccchhhccceechhhhcccccceeEe
Confidence 99999998876544422 12369999998876 333433221 13478999999
Q ss_pred ehhhHHhhHh----------------HhhhHHHHHhhccccc---------cccc-------------------------
Q 013826 159 DETDRLLREA----------------YQAWLPTVLQLTRSDN---------ENRF------------------------- 188 (436)
Q Consensus 159 DE~h~~~~~~----------------~~~~~~~i~~~~~~~~---------~~~~------------------------- 188 (436)
||+|.++-+. .+..+..+...+.... ...|
T Consensus 209 DEvDsiLIDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~ 288 (913)
T PRK13103 209 DEVDSILIDEARTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQ 288 (913)
T ss_pred chhhheeccccCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhh
Confidence 9999853211 1222222222221100 0000
Q ss_pred ----ccccccc-cc---c-------cccc-------ccccccc---cccccCCCCccce---------------------
Q 013826 189 ----SDASTFL-PS---A-------FGSL-------KTIRRCG---VERGFKDKPYPRL--------------------- 222 (436)
Q Consensus 189 ----~~~~~~~-~~---~-------~~~~-------~~~~~~~---~~~~~~~~~~~~~--------------------- 222 (436)
..+...+ .. . +.+. -.+-..+ +...+.....+..
T Consensus 289 ~~i~~~~~~ly~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e 368 (913)
T PRK13103 289 AGLLAEGESLYSAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAE 368 (913)
T ss_pred CCCcccchhccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCC
Confidence 0000000 00 0 0000 0000000 0000111111100
Q ss_pred -----------------eeeeeccccccCchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHH-h
Q 013826 223 -----------------VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-S 284 (436)
Q Consensus 223 -----------------~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~ 284 (436)
+...+|+|......++....-.+...+++.. +....+.. -.+......|...+.+.+. .
T Consensus 369 ~~t~AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnk--P~~R~D~~-d~vy~t~~eK~~Ai~~ei~~~ 445 (913)
T PRK13103 369 SQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNK--PLARKDFN-DLVYLTAEEKYAAIITDIKEC 445 (913)
T ss_pred ceeEEeehHHHHHHhcchhccCCCCCHHHHHHHHHHhCCCEEECCCCC--CcccccCC-CeEEcCHHHHHHHHHHHHHHH
Confidence 1235566664433333333322322222222 11111111 1223333445555444443 2
Q ss_pred c-CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCC-eeEEEecCCcccccCCC-----
Q 013826 285 L-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQVLVSSDAMTRGMDVE----- 357 (436)
Q Consensus 285 ~-~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~vlv~t~~~~~Gidi~----- 357 (436)
+ .+.++||-+.|++..+.+++.|+..+ ++.-+++......|...+. .+|+ -.|.|+|+|.++|.|+.
T Consensus 446 ~~~GrPVLVGT~SVe~SE~ls~~L~~~g---i~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~ 519 (913)
T PRK13103 446 MALGRPVLVGTATIETSEHMSNLLKKEG---IEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNW 519 (913)
T ss_pred HhCCCCEEEEeCCHHHHHHHHHHHHHcC---CcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCch
Confidence 3 47789999999999999999999876 5555555554443333333 3443 37999999999999995
Q ss_pred --------------------------------CCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchh
Q 013826 358 --------------------------------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 398 (436)
Q Consensus 358 --------------------------------~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 398 (436)
+-=+||....+.|...-.|..||+||.|.+|.+-+|++-.|
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 520 EVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 11157777788899999999999999999999999987654
No 128
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=8.5e-19 Score=161.61 Aligned_cols=297 Identities=20% Similarity=0.287 Sum_probs=190.4
Q ss_pred CCCcEEEECCCCchHHHHhHHHHHHHHHHhhc-CCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHH
Q 013826 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 101 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 101 (436)
.++-+++.+.||||||.. +.+.++..+. .++-+-+.-|.+.-+..+++.... .+|...+..+|..-..++.
T Consensus 370 ~n~vvvivgETGSGKTTQ----l~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~---EM~~~lG~~VGYsIRFEdv- 441 (1042)
T KOG0924|consen 370 ENQVVVIVGETGSGKTTQ----LAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAE---EMGVTLGDTVGYSIRFEDV- 441 (1042)
T ss_pred hCcEEEEEecCCCCchhh----hHHHHHhcccccCCeeeecCchHHHHHHHHHHHHH---HhCCccccccceEEEeeec-
Confidence 477889999999999986 3333433332 333344445777776666655443 3344444444443322221
Q ss_pred HhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHHhhHhHhhhHHHHHhhcc
Q 013826 102 ELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 181 (436)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~ 181 (436)
......|-++|.+.|++-... +-.+..+++||+||||.-.-. -..+..+++...
T Consensus 442 ----------------------T~~~T~IkymTDGiLLrEsL~--d~~L~kYSviImDEAHERslN--tDilfGllk~~l 495 (1042)
T KOG0924|consen 442 ----------------------TSEDTKIKYMTDGILLRESLK--DRDLDKYSVIIMDEAHERSLN--TDILFGLLKKVL 495 (1042)
T ss_pred ----------------------CCCceeEEEeccchHHHHHhh--hhhhhheeEEEechhhhcccc--hHHHHHHHHHHH
Confidence 123347999999999775443 234788999999999963111 122222322221
Q ss_pred cccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhccccCCceeeecCCccccCCcc
Q 013826 182 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 261 (436)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (436)
.. ...++.++.|||+. ...+...+..-|.+...+.. +
T Consensus 496 ar-----------------------------------RrdlKliVtSATm~--a~kf~nfFgn~p~f~IpGRT-y----- 532 (1042)
T KOG0924|consen 496 AR-----------------------------------RRDLKLIVTSATMD--AQKFSNFFGNCPQFTIPGRT-Y----- 532 (1042)
T ss_pred Hh-----------------------------------hccceEEEeecccc--HHHHHHHhCCCceeeecCCc-c-----
Confidence 10 02457899999994 44444444333333322221 1
Q ss_pred ccceeeeccCcCcHHHHHHHHHhc-------CCCcEEEEcCCchhHHHHHHHHhh----hc---ccceeEEEeccccchH
Q 013826 262 LESYKLICESKLKPLYLVALLQSL-------GEEKCIVFTSSVESTHRLCTLLNH----FG---ELRIKIKEYSGLQRQS 327 (436)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~~lvf~~~~~~~~~~~~~l~~----~~---~~~~~~~~~~~~~~~~ 327 (436)
............+++...+++. ..+-+|||.+..+..+..+..+++ +. .-++.+..+.+-++.+
T Consensus 533 --PV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~d 610 (1042)
T KOG0924|consen 533 --PVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPAD 610 (1042)
T ss_pred --ceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchh
Confidence 1233334455666666666543 457899999998877666655543 32 1257788899999887
Q ss_pred HHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecC------------------CCChhHHHHHhhhcccCCCCce
Q 013826 328 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIKTYIHRAGRTARAGQLGR 389 (436)
Q Consensus 328 ~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~~~~g~ 389 (436)
-..+++..-..|..+++|+|++.+..+.+|++..||..+. |.|-..-.||.||+||.| +|.
T Consensus 611 lQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~ 689 (1042)
T KOG0924|consen 611 LQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGT 689 (1042)
T ss_pred hhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccc
Confidence 7766666666788999999999999999999999986332 456667789999999987 999
Q ss_pred EEEEecchhH
Q 013826 390 CFTLLHKDEV 399 (436)
Q Consensus 390 ~~~~~~~~~~ 399 (436)
||-+++...+
T Consensus 690 cYRlYTe~ay 699 (1042)
T KOG0924|consen 690 CYRLYTEDAY 699 (1042)
T ss_pred eeeehhhhHH
Confidence 9999987443
No 129
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.82 E-value=1.8e-17 Score=158.93 Aligned_cols=85 Identities=19% Similarity=0.218 Sum_probs=68.2
Q ss_pred hhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh-hh--hCc
Q 013826 9 VQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA-PA--VGL 85 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~-~~--~~~ 85 (436)
.|.+.++.+.+.+..++.+++.||||+|||++++++++..+... .+.+++|++||++|..|+.+.+..+. .. .++
T Consensus 1 ~Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~--~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i 78 (636)
T TIGR03117 1 EQALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER--PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPV 78 (636)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc--cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCe
Confidence 37888888888888889999999999999999999998876532 34689999999999999999888776 22 245
Q ss_pred eEEEeccCcc
Q 013826 86 SVGLAVGQSS 95 (436)
Q Consensus 86 ~v~~~~~~~~ 95 (436)
++..+.|...
T Consensus 79 ~~~~lkGr~n 88 (636)
T TIGR03117 79 QAGFFPGSQE 88 (636)
T ss_pred eEEEEECCcc
Confidence 5666556544
No 130
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.81 E-value=5.7e-18 Score=169.20 Aligned_cols=130 Identities=22% Similarity=0.235 Sum_probs=91.7
Q ss_pred HHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCe-eEEEecCCcccccCC
Q 013826 278 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI-QVLVSSDAMTRGMDV 356 (436)
Q Consensus 278 l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~-~vlv~t~~~~~Gidi 356 (436)
+..+++.. ++++|||++|.+..+.+++.+...... .....++ ..++.+.++.|.++.- .++|+++.++||+|+
T Consensus 471 i~~~~~~~-~~~~lvlF~Sy~~l~~~~~~~~~~~~~--~~v~~q~---~~~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~ 544 (654)
T COG1199 471 LREILKAS-PGGVLVLFPSYEYLKRVAERLKDERST--LPVLTQG---EDEREELLEKFKASGEGLILVGGGSFWEGVDF 544 (654)
T ss_pred HHHHHhhc-CCCEEEEeccHHHHHHHHHHHhhcCcc--ceeeecC---CCcHHHHHHHHHHhcCCeEEEeeccccCcccC
Confidence 33333443 459999999999999999999875411 1223333 3345578888887654 899999999999999
Q ss_pred CC--CCeEEEecCCC------------------------------ChhHHHHHhhhcccCCCC-ceEEEEecchhHHHHH
Q 013826 357 EG--VNNVVNYDKPA------------------------------YIKTYIHRAGRTARAGQL-GRCFTLLHKDEVKRFK 403 (436)
Q Consensus 357 ~~--~~~vi~~~~~~------------------------------s~~~~~Q~~GR~~R~~~~-g~~~~~~~~~~~~~~~ 403 (436)
|+ ++.||+...|. ....+.|.+||+.|...+ |.++++..+.....+.
T Consensus 545 ~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~ 624 (654)
T COG1199 545 PGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYG 624 (654)
T ss_pred CCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHH
Confidence 97 67788877652 244568999999996655 6666666656666677
Q ss_pred HHHHHhcCCC
Q 013826 404 KLLQKADNDS 413 (436)
Q Consensus 404 ~~~~~~~~~~ 413 (436)
+.+-......
T Consensus 625 ~~l~~~l~~~ 634 (654)
T COG1199 625 KLLLDSLPPF 634 (654)
T ss_pred HHHHHhCCCC
Confidence 7766644433
No 131
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.81 E-value=4.1e-18 Score=151.73 Aligned_cols=313 Identities=14% Similarity=0.129 Sum_probs=196.3
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh
Q 013826 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 83 (436)
..|-|+|.+.+..+++ +|..+++...+|-|||+.++. +.....+.. ..||+||. .+...|++.+++|++..
T Consensus 197 s~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAla-IA~yyraEw----plliVcPA-svrftWa~al~r~lps~ 267 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALA-IARYYRAEW----PLLIVCPA-SVRFTWAKALNRFLPSI 267 (689)
T ss_pred HhhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHH-HHHHHhhcC----cEEEEecH-HHhHHHHHHHHHhcccc
Confidence 4678999999887776 689999999999999998654 333333332 59999998 56678999999998765
Q ss_pred CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhH
Q 013826 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 163 (436)
Q Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~ 163 (436)
.. +.++.++..... ..+....|.|.+++.+..+-.. +.-..+.++|+||+|+
T Consensus 268 ~p-i~vv~~~~D~~~------------------------~~~t~~~v~ivSye~ls~l~~~---l~~~~~~vvI~DEsH~ 319 (689)
T KOG1000|consen 268 HP-IFVVDKSSDPLP------------------------DVCTSNTVAIVSYEQLSLLHDI---LKKEKYRVVIFDESHM 319 (689)
T ss_pred cc-eEEEecccCCcc------------------------ccccCCeEEEEEHHHHHHHHHH---HhcccceEEEEechhh
Confidence 32 333333322110 1222347999999998765443 2234589999999998
Q ss_pred HhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCc-h------
Q 013826 164 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP-N------ 236 (436)
Q Consensus 164 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~-~------ 236 (436)
+-+..... ...+....... -+.+++|+|+.-.. .
T Consensus 320 Lk~sktkr-~Ka~~dllk~a--------------------------------------khvILLSGTPavSRP~elytqi 360 (689)
T KOG1000|consen 320 LKDSKTKR-TKAATDLLKVA--------------------------------------KHVILLSGTPAVSRPSELYTQI 360 (689)
T ss_pred hhccchhh-hhhhhhHHHHh--------------------------------------hheEEecCCcccCCchhhhhhh
Confidence 74432221 22222211111 12344444443110 0
Q ss_pred ------------hhhccccCC---ceeeecCCcc-----------------------ccCCccccceee-----------
Q 013826 237 ------------KLAQLDLHH---PLFLTTGETR-----------------------YKLPERLESYKL----------- 267 (436)
Q Consensus 237 ------------~~~~~~~~~---~~~~~~~~~~-----------------------~~~~~~~~~~~~----------- 267 (436)
++....+.. +..+...... ..++...+....
T Consensus 361 ~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~~gr~da~~~ 440 (689)
T KOG1000|consen 361 RAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVSGGRIDARMD 440 (689)
T ss_pred hhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEcCCccchHHH
Confidence 000000000 0000000000 000000000000
Q ss_pred --------------------------eccCcCcHHHHHHHHHhc------CCCcEEEEcCCchhHHHHHHHHhhhcccce
Q 013826 268 --------------------------ICESKLKPLYLVALLQSL------GEEKCIVFTSSVESTHRLCTLLNHFGELRI 315 (436)
Q Consensus 268 --------------------------~~~~~~~~~~l~~~l~~~------~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~ 315 (436)
......|...+.+.+..+ ++.|.|||+++....+.+-..+.+.+ +
T Consensus 441 ~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~---v 517 (689)
T KOG1000|consen 441 DLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRK---V 517 (689)
T ss_pred HHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcC---C
Confidence 011122333333333321 35689999999999999999998877 8
Q ss_pred eEEEeccccchHHHHHHHHHHhcC-CeeE-EEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEE
Q 013826 316 KIKEYSGLQRQSVRSKTLKAFREG-KIQV-LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393 (436)
Q Consensus 316 ~~~~~~~~~~~~~r~~~~~~f~~g-~~~v-lv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 393 (436)
+...+.|..+..+|....+.|..+ +..| +++....+.|+++...+.||+...+|++.-++|.--|+.|.|++..+.++
T Consensus 518 g~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ 597 (689)
T KOG1000|consen 518 GSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQ 597 (689)
T ss_pred CeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEE
Confidence 889999999999999999999865 4555 45557789999999999999999999999999999999999999877777
Q ss_pred ec
Q 013826 394 LH 395 (436)
Q Consensus 394 ~~ 395 (436)
+.
T Consensus 598 yl 599 (689)
T KOG1000|consen 598 YL 599 (689)
T ss_pred EE
Confidence 64
No 132
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=3.8e-18 Score=164.41 Aligned_cols=352 Identities=17% Similarity=0.166 Sum_probs=204.8
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.|++.|.-.--. -.+.-|..+.||-|||+++.+|++-... .+..|-|++.+..|+..=++++..+...+|
T Consensus 78 r~ydVQliGglv------Lh~G~IAEMkTGEGKTLvAtLpayLnAL----~GkgVhVVTvNdYLA~RDae~mg~vy~fLG 147 (925)
T PRK12903 78 RPYDVQIIGGII------LDLGSVAEMKTGEGKTITSIAPVYLNAL----TGKGVIVSTVNEYLAERDAEEMGKVFNFLG 147 (925)
T ss_pred CcCchHHHHHHH------HhcCCeeeecCCCCccHHHHHHHHHHHh----cCCceEEEecchhhhhhhHHHHHHHHHHhC
Confidence 466777544321 1344589999999999998887764333 444799999999999988999999999999
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhH-HHHhhcCCC-----cccCCccEEEE
Q 013826 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG-----FTLEHLCYLVV 158 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~l~~~~~-----~~~~~~~~iIi 158 (436)
+.+++...+....... ....++|.++|...| ++.|+.+.. .....+.+.||
T Consensus 148 LsvG~i~~~~~~~~rr-----------------------~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIV 204 (925)
T PRK12903 148 LSVGINKANMDPNLKR-----------------------EAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLI 204 (925)
T ss_pred CceeeeCCCCChHHHH-----------------------HhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeee
Confidence 9999988765544332 223469999998776 444544322 23567889999
Q ss_pred ehhhHHhhH----------------hHhhhHHHHHhhcccc--------------------------ccccccccccccc
Q 013826 159 DETDRLLRE----------------AYQAWLPTVLQLTRSD--------------------------NENRFSDASTFLP 196 (436)
Q Consensus 159 DE~h~~~~~----------------~~~~~~~~i~~~~~~~--------------------------~~~~~~~~~~~~~ 196 (436)
||++.++-+ ..+..+..+...+... ..+.+..+...+.
T Consensus 205 DEVDSILIDEArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~ 284 (925)
T PRK12903 205 DEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELV 284 (925)
T ss_pred ccchheeecccCCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHH
Confidence 999984321 1222223333322110 0000000000000
Q ss_pred cc----cccc-------ccccccc---cccccCCCCccc--------------------------------------eee
Q 013826 197 SA----FGSL-------KTIRRCG---VERGFKDKPYPR--------------------------------------LVK 224 (436)
Q Consensus 197 ~~----~~~~-------~~~~~~~---~~~~~~~~~~~~--------------------------------------~~~ 224 (436)
.+ +.+. -.+-..+ +...+.....+. .+.
T Consensus 285 h~i~~AL~A~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kL 364 (925)
T PRK12903 285 HRIQNALRAHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKL 364 (925)
T ss_pred HHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchh
Confidence 00 0000 0000000 000111111110 013
Q ss_pred eeeccccccCchhhhccccCCceeeecCCccccCCccccceeeeccCcCcHHHHHHHHH-hc-CCCcEEEEcCCchhHHH
Q 013826 225 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-SL-GEEKCIVFTSSVESTHR 302 (436)
Q Consensus 225 i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~-~~~~~lvf~~~~~~~~~ 302 (436)
..+|+|......++....-.+...+++.. +....+.. -.+......|...+.+.+. .+ .+.++||.|.|++.++.
T Consensus 365 sGMTGTA~te~~Ef~~iY~l~Vv~IPTnk--P~~R~D~~-d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ 441 (925)
T PRK12903 365 SGMTGTAKTEEQEFIDIYNMRVNVVPTNK--PVIRKDEP-DSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSET 441 (925)
T ss_pred hccCCCCHHHHHHHHHHhCCCEEECCCCC--CeeeeeCC-CcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHH
Confidence 35566654333333322222222222211 11111111 1222333445444544443 33 46789999999999999
Q ss_pred HHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCC-eeEEEecCCcccccCCCCCC--------eEEEecCCCChhH
Q 013826 303 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQVLVSSDAMTRGMDVEGVN--------NVVNYDKPAYIKT 373 (436)
Q Consensus 303 ~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~vlv~t~~~~~Gidi~~~~--------~vi~~~~~~s~~~ 373 (436)
+++.|.+.+ ++..+++..... ++..+-+ .+|+ -.|.|+|+|.++|.|+.--. +||....+.|...
T Consensus 442 ls~~L~~~g---i~h~vLNAk~~e--~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRI 515 (925)
T PRK12903 442 LHELLLEAN---IPHTVLNAKQNA--REAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRI 515 (925)
T ss_pred HHHHHHHCC---CCceeecccchh--hHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHH
Confidence 999999876 666677765443 3333322 4453 48999999999999997322 7888888889888
Q ss_pred HHHHhhhcccCCCCceEEEEecchh
Q 013826 374 YIHRAGRTARAGQLGRCFTLLHKDE 398 (436)
Q Consensus 374 ~~Q~~GR~~R~~~~g~~~~~~~~~~ 398 (436)
-.|..||+||.|.+|.+..|++-.|
T Consensus 516 DnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 516 DNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred HHHHhcccccCCCCCcceEEEecch
Confidence 8999999999999999988887654
No 133
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.79 E-value=9.6e-18 Score=167.54 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=69.6
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
|.|..+||.|.+.+..+...+..++++++.+|||+|||++.+.+++++....+ ...+++|++.|..-..|..++++..
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-EVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-ccccEEEEcccchHHHHHHHHHHhh
Confidence 67888899999999999999999999999999999999999999998776543 3468999999999999999999885
No 134
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.79 E-value=8.5e-18 Score=157.63 Aligned_cols=368 Identities=20% Similarity=0.196 Sum_probs=218.2
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
+|.+||.-.+..+.--...+=++|+...+|-|||..+ ++.+..+...+.++ .=|||||+..|- .|.+++.+||+.
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g~~g-pHLVVvPsSTle-NWlrEf~kwCPs-- 473 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIGNPG-PHLVVVPSSTLE-NWLREFAKWCPS-- 473 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcCCCC-CcEEEecchhHH-HHHHHHHHhCCc--
Confidence 4889998887766543344557799999999999864 55666666665444 589999997765 589999999984
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHH
Q 013826 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 164 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~ 164 (436)
+.|..++|............... ....+|+++||.....--.....+.-.+++++|+||+|.+
T Consensus 474 l~Ve~YyGSq~ER~~lR~~i~~~-----------------~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmL 536 (941)
T KOG0389|consen 474 LKVEPYYGSQDERRELRERIKKN-----------------KDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHML 536 (941)
T ss_pred eEEEeccCcHHHHHHHHHHHhcc-----------------CCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhh
Confidence 78899999986666554443221 1246999999877643221111223456899999999976
Q ss_pred hhHhH--hhhHH--------------------HHHhhcccccccccccccccccccccccccccc---------------
Q 013826 165 LREAY--QAWLP--------------------TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR--------------- 207 (436)
Q Consensus 165 ~~~~~--~~~~~--------------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 207 (436)
-.... +.++. .+.+++...-|..|......+...+........
T Consensus 537 KN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrA 616 (941)
T KOG0389|consen 537 KNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRA 616 (941)
T ss_pred hccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHH
Confidence 44422 12222 222222222333333333322222222111000
Q ss_pred -----c----ccccccCCCCccceee---eeeccccccCchhhhccc-------------------------cCCceeee
Q 013826 208 -----C----GVERGFKDKPYPRLVK---MVLSATLTQDPNKLAQLD-------------------------LHHPLFLT 250 (436)
Q Consensus 208 -----~----~~~~~~~~~~~~~~~~---i~~sat~~~~~~~~~~~~-------------------------~~~~~~~~ 250 (436)
+ .....+-...-+..+. +.++......-...+... -.+|..+.
T Consensus 617 K~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R 696 (941)
T KOG0389|consen 617 KTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFR 696 (941)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHH
Confidence 0 0000000001111111 112211110000000000 00011000
Q ss_pred cCCcc---------------------ccCCc------ccc------------ceee---eccCcCcHHHHHHHHHhc--C
Q 013826 251 TGETR---------------------YKLPE------RLE------------SYKL---ICESKLKPLYLVALLQSL--G 286 (436)
Q Consensus 251 ~~~~~---------------------~~~~~------~~~------------~~~~---~~~~~~~~~~l~~~l~~~--~ 286 (436)
.-... ..+.+ +++ .+.+ ..-...|...|..+|... .
T Consensus 697 ~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~ 776 (941)
T KOG0389|consen 697 SIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKK 776 (941)
T ss_pred HhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhc
Confidence 00000 00000 000 0000 001233556666666543 4
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCC--eeEEEecCCcccccCCCCCCeEEE
Q 013826 287 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSSDAMTRGMDVEGVNNVVN 364 (436)
Q Consensus 287 ~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~t~~~~~Gidi~~~~~vi~ 364 (436)
+.++|||..-.....-+..+|..++ +....+.|.....+|+.++..|..++ .-+|++|.+.+.|||+..+++||+
T Consensus 777 G~RVLiFSQFTqmLDILE~~L~~l~---~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIi 853 (941)
T KOG0389|consen 777 GDRVLIFSQFTQMLDILEVVLDTLG---YKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVII 853 (941)
T ss_pred CCEEEEeeHHHHHHHHHHHHHHhcC---ceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEE
Confidence 5799999998888888888888776 89999999999999999999999764 456899999999999999999999
Q ss_pred ecCCCChhHHHHHhhhcccCCCCceEEEE--ecch
Q 013826 365 YDKPAYIKTYIHRAGRTARAGQLGRCFTL--LHKD 397 (436)
Q Consensus 365 ~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~--~~~~ 397 (436)
++...+|-.-.|.--||.|.|+...|.++ ++..
T Consensus 854 hD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 854 HDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred eecCCCCcccchhHHHHHhhCCcceeEEEEEEecC
Confidence 99999999999999999999988665554 4443
No 135
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.78 E-value=3.3e-16 Score=155.25 Aligned_cols=118 Identities=25% Similarity=0.327 Sum_probs=81.7
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhc----CCeeEEEecCCcccccCCCC--C
Q 013826 286 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE----GKIQVLVSSDAMTRGMDVEG--V 359 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~t~~~~~Gidi~~--~ 359 (436)
..+++||+++|.+..+.+++.|.... +..+ ...+. ..+..+++.|++ ++..||++|+.+++|||+|+ +
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~--~~~l-l~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l 606 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDL--RLML-LVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYL 606 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhc--CCcE-EEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCce
Confidence 35569999999999999999997532 1232 33443 246677766764 67789999999999999997 7
Q ss_pred CeEEEecCCCC------------------------------hhHHHHHhhhcccCCCC-ceEEEEecchhHHHHHH-HHH
Q 013826 360 NNVVNYDKPAY------------------------------IKTYIHRAGRTARAGQL-GRCFTLLHKDEVKRFKK-LLQ 407 (436)
Q Consensus 360 ~~vi~~~~~~s------------------------------~~~~~Q~~GR~~R~~~~-g~~~~~~~~~~~~~~~~-~~~ 407 (436)
++||+...|.. ...+.|.+||..|...+ |.++++..+-....+.+ +++
T Consensus 607 ~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~Yg~~~l~ 686 (697)
T PRK11747 607 TQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKRYGKRLLD 686 (697)
T ss_pred EEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchhHHHHHHH
Confidence 88988776521 12347999999998755 65555544445566644 444
Q ss_pred Hh
Q 013826 408 KA 409 (436)
Q Consensus 408 ~~ 409 (436)
.+
T Consensus 687 sL 688 (697)
T PRK11747 687 AL 688 (697)
T ss_pred hC
Confidence 44
No 136
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.78 E-value=1.1e-17 Score=163.35 Aligned_cols=111 Identities=17% Similarity=0.217 Sum_probs=96.8
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcC-CeeEE-EecCCcccccCCCCCCeEEE
Q 013826 287 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVL-VSSDAMTRGMDVEGVNNVVN 364 (436)
Q Consensus 287 ~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vl-v~t~~~~~Gidi~~~~~vi~ 364 (436)
+.|+||||.-+.....+.+.|-+.....+....+.|..++..|.++.++|.++ .++|| .+|.+.+-|+|+.+++.||+
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVF 1419 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVF 1419 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEE
Confidence 35899999999999999998877766667777899999999999999999999 78876 56689999999999999999
Q ss_pred ecCCCChhHHHHHhhhcccCCCCce--EEEEecch
Q 013826 365 YDKPAYIKTYIHRAGRTARAGQLGR--CFTLLHKD 397 (436)
Q Consensus 365 ~~~~~s~~~~~Q~~GR~~R~~~~g~--~~~~~~~~ 397 (436)
+...|+|..-.|.+-|+.|.|++.. ||.++.+.
T Consensus 1420 vEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1420 VEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred EecCCCchhhHHHHHHHHhhcCceeeeeeeehhcc
Confidence 9999999999999999999998844 45555543
No 137
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.77 E-value=7.3e-17 Score=156.51 Aligned_cols=128 Identities=24% Similarity=0.254 Sum_probs=94.2
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.|++.|.-. .+.-.+.-|..+.||.|||+++.++++-... .+..+.|++++..|+.+-++++..+...+|
T Consensus 76 r~ydvQlig------~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL----~G~~VhVvT~NdyLA~RD~e~m~pvy~~LG 145 (870)
T CHL00122 76 RHFDVQLIG------GLVLNDGKIAEMKTGEGKTLVATLPAYLNAL----TGKGVHIVTVNDYLAKRDQEWMGQIYRFLG 145 (870)
T ss_pred CCCchHhhh------hHhhcCCccccccCCCCchHHHHHHHHHHHh----cCCceEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence 367777433 2223567799999999999998888753222 345799999999999999999999999999
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhH-HHHhhcCC-----CcccCCccEEEE
Q 013826 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLCYLVV 158 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~l~~~~-----~~~~~~~~~iIi 158 (436)
+.+++..++.+...... ...++|.++|...+ ++.|+.+. ......+.+.||
T Consensus 146 Lsvg~i~~~~~~~err~-----------------------aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIV 202 (870)
T CHL00122 146 LTVGLIQEGMSSEERKK-----------------------NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCII 202 (870)
T ss_pred CceeeeCCCCChHHHHH-----------------------hcCCCCEecCCccccccchhhccCcChHHhhccccceeee
Confidence 99999888776555422 23469999998765 33333322 123567889999
Q ss_pred ehhhHHh
Q 013826 159 DETDRLL 165 (436)
Q Consensus 159 DE~h~~~ 165 (436)
||++.++
T Consensus 203 DEvDSiL 209 (870)
T CHL00122 203 DEVDSIL 209 (870)
T ss_pred ecchhhe
Confidence 9999853
No 138
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.76 E-value=7.9e-18 Score=164.42 Aligned_cols=316 Identities=19% Similarity=0.235 Sum_probs=201.8
Q ss_pred hhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh-hhhhCceEEEeccCcc
Q 013826 17 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI-APAVGLSVGLAVGQSS 95 (436)
Q Consensus 17 ~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~-~~~~~~~v~~~~~~~~ 95 (436)
+++.+..++.+++.+.||+|||......+++.....+ +..++++.-|.+--+.-+++....- +...|-.|+.-.+-..
T Consensus 181 Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~ 259 (924)
T KOG0920|consen 181 ILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-AACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLES 259 (924)
T ss_pred HHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-CCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeeec
Confidence 3444446889999999999999987777887766655 5556777779887777777665432 2222333322222211
Q ss_pred hhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHHhhHhHhhhHHH
Q 013826 96 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 175 (436)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~ 175 (436)
. ......+.+||.+.|++.+.. +-.+.++..+|+||+|.-.-. .+.+-.
T Consensus 260 ~---------------------------~s~~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER~i~--~DflLi 308 (924)
T KOG0920|consen 260 K---------------------------RSRETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHERSIN--TDFLLI 308 (924)
T ss_pred c---------------------------cCCceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEccCC--cccHHH
Confidence 1 112248999999999999886 345889999999999953211 122222
Q ss_pred HHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhccccCCceeeecCCcc
Q 013826 176 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 255 (436)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (436)
+++.+-..+ +.++.+++|||.... .+-..+..-|.+...+...
T Consensus 309 ~lk~lL~~~-----------------------------------p~LkvILMSAT~dae--~fs~YF~~~pvi~i~grtf 351 (924)
T KOG0920|consen 309 LLKDLLPRN-----------------------------------PDLKVILMSATLDAE--LFSDYFGGCPVITIPGRTF 351 (924)
T ss_pred HHHHHhhhC-----------------------------------CCceEEEeeeecchH--HHHHHhCCCceEeecCCCc
Confidence 222221111 456889999999632 2222222222222211110
Q ss_pred ccCCc---------------ccccee------------eeccCcCcHHHHHHHHH----hcCCCcEEEEcCCchhHHHHH
Q 013826 256 YKLPE---------------RLESYK------------LICESKLKPLYLVALLQ----SLGEEKCIVFTSSVESTHRLC 304 (436)
Q Consensus 256 ~~~~~---------------~~~~~~------------~~~~~~~~~~~l~~~l~----~~~~~~~lvf~~~~~~~~~~~ 304 (436)
+... ....+. .....+.....+..++. ....+.+|||.|.......+.
T Consensus 352 -pV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~ 430 (924)
T KOG0920|consen 352 -PVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLK 430 (924)
T ss_pred -chHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHH
Confidence 0000 000000 00011122223333332 224678999999999999999
Q ss_pred HHHhhhcc----cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecC--------CC---
Q 013826 305 TLLNHFGE----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK--------PA--- 369 (436)
Q Consensus 305 ~~l~~~~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~--------~~--- 369 (436)
+.|..... ..+.+...|+.|+..+...+....-.|..+|+++|++.+.+|-++++-.||..+. ..
T Consensus 431 ~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s 510 (924)
T KOG0920|consen 431 ELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVS 510 (924)
T ss_pred HHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcc
Confidence 99975321 2367888999999999999999888999999999999999999999888886433 22
Q ss_pred -------ChhHHHHHhhhcccCCCCceEEEEecchhHHHHH
Q 013826 370 -------YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFK 403 (436)
Q Consensus 370 -------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~ 403 (436)
|...-.||.||+||. .+|.||-++....+..+.
T Consensus 511 ~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~~~ 550 (924)
T KOG0920|consen 511 CLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEKLM 550 (924)
T ss_pred hhheeeccccchHHhcccccCc-cCCeeEEeechhhhhhcc
Confidence 355668999999997 589999999877654433
No 139
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.76 E-value=5.5e-18 Score=133.66 Aligned_cols=118 Identities=39% Similarity=0.580 Sum_probs=107.2
Q ss_pred CcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCc
Q 013826 273 LKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 350 (436)
Q Consensus 273 ~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~ 350 (436)
.+...+...+.+. .++++||||++.+.++.+++.|.+.. .++..+|++++..+|...++.|.++...+|++|+++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPG---IKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcC---CcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChh
Confidence 4666677777665 37899999999999999999998744 789999999999999999999999999999999999
Q ss_pred ccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEE
Q 013826 351 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393 (436)
Q Consensus 351 ~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 393 (436)
++|+|+|+++++++++.+++...+.|++||++|.|+.|.++++
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999988888764
No 140
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.75 E-value=7.8e-17 Score=137.07 Aligned_cols=184 Identities=35% Similarity=0.561 Sum_probs=130.6
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+++..++++|.+++..+.... +.+++.+|||+|||.++...+++.+... .+.++++++|+..++.|+...+...+
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~---~~~~i~~~~GsGKT~~~~~~~~~~~~~~--~~~~~l~~~p~~~~~~~~~~~~~~~~ 78 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGL---RDVILAAPTGSGKTLAALLPALEALKRG--KGKRVLVLVPTRELAEQWAEELKKLG 78 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCC---CcEEEECCCCCchhHHHHHHHHHHhccc--CCCcEEEEeCCHHHHHHHHHHHHHHh
Confidence 467889999999998877522 8999999999999998888888776654 24579999999999999999999887
Q ss_pred hhhC-ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCC-cEEEeCchhHHHHhhcCCCcccCCccEEEE
Q 013826 81 PAVG-LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV-DILVATPGRLMDHINATRGFTLEHLCYLVV 158 (436)
Q Consensus 81 ~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Iii~T~~~l~~~l~~~~~~~~~~~~~iIi 158 (436)
.... .......+... ... +.....+. +++++|++.+.+.+.... .....++++|+
T Consensus 79 ~~~~~~~~~~~~~~~~-~~~---------------------~~~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iIi 135 (201)
T smart00487 79 PSLGLKVVGLYGGDSK-REQ---------------------LRKLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVIL 135 (201)
T ss_pred ccCCeEEEEEeCCcch-HHH---------------------HHHHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEEE
Confidence 5433 23333333321 111 12233334 999999999999888744 45677899999
Q ss_pred ehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhh
Q 013826 159 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 238 (436)
Q Consensus 159 DE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~ 238 (436)
||+|.+....+...+..+..... ...+.+++|||+.......
T Consensus 136 DE~h~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~v~~saT~~~~~~~~ 177 (201)
T smart00487 136 DEAHRLLDGGFGDQLEKLLKLLP--------------------------------------KNVQLLLLSATPPEEIENL 177 (201)
T ss_pred ECHHHHhcCCcHHHHHHHHHhCC--------------------------------------ccceEEEEecCCchhHHHH
Confidence 99999865444455555554431 2236799999998776666
Q ss_pred hccccCCceeee
Q 013826 239 AQLDLHHPLFLT 250 (436)
Q Consensus 239 ~~~~~~~~~~~~ 250 (436)
..........+.
T Consensus 178 ~~~~~~~~~~~~ 189 (201)
T smart00487 178 LELFLNDPVFID 189 (201)
T ss_pred HHHhcCCCEEEe
Confidence 665555544443
No 141
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.74 E-value=6.4e-17 Score=146.25 Aligned_cols=277 Identities=21% Similarity=0.279 Sum_probs=174.8
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhh
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 104 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 104 (436)
+-++-++||.||||+- +++.+...+ +.+|..|.+-|+.+++..+++. |+....++|+......-+
T Consensus 192 kIi~H~GPTNSGKTy~----ALqrl~~ak----sGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~--- 256 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYR----ALQRLKSAK----SGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN--- 256 (700)
T ss_pred eEEEEeCCCCCchhHH----HHHHHhhhc----cceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC---
Confidence 3355699999999987 555555543 6899999999999999998887 777888888865433211
Q ss_pred ccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHHhhHhH-hhhHHHHHhhcccc
Q 013826 105 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY-QAWLPTVLQLTRSD 183 (436)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~~~~~~-~~~~~~i~~~~~~~ 183 (436)
...++.+-||-++. . .-..+++.|+||.+.+.+++- +.|.+.++......
T Consensus 257 --------------------~~~a~hvScTVEM~----s-----v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdE 307 (700)
T KOG0953|consen 257 --------------------GNPAQHVSCTVEMV----S-----VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADE 307 (700)
T ss_pred --------------------CCcccceEEEEEEe----e-----cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhh
Confidence 12236667775444 1 133588999999998866542 24455555543221
Q ss_pred cccccccccccccccccccccccccccccccCCCCccceeeeeeccccc--cCchhhhccccCCceeeecCCccccCCcc
Q 013826 184 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT--QDPNKLAQLDLHHPLFLTTGETRYKLPER 261 (436)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (436)
+=+.+.+. +-+..+....-.+ ..
T Consensus 308 -----------------------------------------iHLCGepsvldlV~~i~k~TGd~--------------ve 332 (700)
T KOG0953|consen 308 -----------------------------------------IHLCGEPSVLDLVRKILKMTGDD--------------VE 332 (700)
T ss_pred -----------------------------------------hhccCCchHHHHHHHHHhhcCCe--------------eE
Confidence 01111110 0000111000000 00
Q ss_pred ccceeeeccCcCcHHHHHHHHHhcC-CCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhc--
Q 013826 262 LESYKLICESKLKPLYLVALLQSLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE-- 338 (436)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~-- 338 (436)
++.|....+- ...+.+..-+.+.. +..++.| |++....+...+.+.+ ...++++.|+++++.|.+....|.+
T Consensus 333 v~~YeRl~pL-~v~~~~~~sl~nlk~GDCvV~F--Skk~I~~~k~kIE~~g--~~k~aVIYGsLPPeTr~aQA~~FNd~~ 407 (700)
T KOG0953|consen 333 VREYERLSPL-VVEETALGSLSNLKPGDCVVAF--SKKDIFTVKKKIEKAG--NHKCAVIYGSLPPETRLAQAALFNDPS 407 (700)
T ss_pred EEeecccCcc-eehhhhhhhhccCCCCCeEEEe--ehhhHHHHHHHHHHhc--CcceEEEecCCCCchhHHHHHHhCCCC
Confidence 0111111111 11112333344444 4444444 6666777777777654 2458999999999999999999997
Q ss_pred CCeeEEEecCCcccccCCCCCCeEEEecCC---------CChhHHHHHhhhcccCCCC---ceEEEEecchhHHHHHHHH
Q 013826 339 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKP---------AYIKTYIHRAGRTARAGQL---GRCFTLLHKDEVKRFKKLL 406 (436)
Q Consensus 339 g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~---------~s~~~~~Q~~GR~~R~~~~---g~~~~~~~~~~~~~~~~~~ 406 (436)
++++|||+|++++.|+|+ +++.||+++.. .+..+..|..||+||.|.. |.+.++ ...|...+.+++
T Consensus 408 ~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl-~~eDL~~L~~~l 485 (700)
T KOG0953|consen 408 NECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTL-HSEDLKLLKRIL 485 (700)
T ss_pred CccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEe-eHhhHHHHHHHH
Confidence 899999999999999999 88999988764 3577889999999998743 666555 445666666666
Q ss_pred H
Q 013826 407 Q 407 (436)
Q Consensus 407 ~ 407 (436)
+
T Consensus 486 ~ 486 (700)
T KOG0953|consen 486 K 486 (700)
T ss_pred h
Confidence 5
No 142
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=5.7e-16 Score=150.15 Aligned_cols=127 Identities=28% Similarity=0.303 Sum_probs=94.3
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.+++.|. +..+.-.+.-|..+.||-|||+++.+|++-... .+..+-|++++..|+..-++++..+...+|
T Consensus 85 r~ydVQl------iGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL----~GkgVhVVTvNdYLA~RDae~m~~vy~~LG 154 (939)
T PRK12902 85 RHFDVQL------IGGMVLHEGQIAEMKTGEGKTLVATLPSYLNAL----TGKGVHVVTVNDYLARRDAEWMGQVHRFLG 154 (939)
T ss_pred CcchhHH------HhhhhhcCCceeeecCCCChhHHHHHHHHHHhh----cCCCeEEEeCCHHHHHhHHHHHHHHHHHhC
Confidence 4666663 333333567799999999999999888775433 444799999999999999999999999999
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhH-HHHhhcC-----CCcccCCccEEEE
Q 013826 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHLCYLVV 158 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~l~~~-----~~~~~~~~~~iIi 158 (436)
+.+++..++.+..... ....++|+++|+..| ++.|+.+ .......+.+.||
T Consensus 155 Ltvg~i~~~~~~~err-----------------------~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIV 211 (939)
T PRK12902 155 LSVGLIQQDMSPEERK-----------------------KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVI 211 (939)
T ss_pred CeEEEECCCCChHHHH-----------------------HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEE
Confidence 9999988776544432 334679999999877 3333222 1134577899999
Q ss_pred ehhhHH
Q 013826 159 DETDRL 164 (436)
Q Consensus 159 DE~h~~ 164 (436)
||++.+
T Consensus 212 DEvDSI 217 (939)
T PRK12902 212 DEVDSI 217 (939)
T ss_pred ecccce
Confidence 999984
No 143
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.72 E-value=1.2e-16 Score=156.50 Aligned_cols=323 Identities=17% Similarity=0.213 Sum_probs=206.5
Q ss_pred ccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh-hhhC
Q 013826 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA-PAVG 84 (436)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~-~~~~ 84 (436)
..|.|.+++..+.+ ++.++++.+|+|||||.++-++++. +....++++++|..+++..+++.+..-+ +..|
T Consensus 1144 ~n~iqtqVf~~~y~---~nd~v~vga~~gsgkt~~ae~a~l~-----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G 1215 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYN---TNDNVLVGAPNGSGKTACAELALLR-----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLG 1215 (1674)
T ss_pred cCCceEEEEeeeec---ccceEEEecCCCCchhHHHHHHhcC-----CccceEEEEecchHHHHHHHHHHHHHhhccccC
Confidence 36788777766554 6789999999999999998777775 2356689999999999998887776554 3447
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHH
Q 013826 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 164 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~ 164 (436)
..+..++|+.+.+-+..+ ..+|+|+||+++-.+. .....++.|.||.|.+
T Consensus 1216 ~~~~~l~ge~s~~lkl~~------------------------~~~vii~tpe~~d~lq------~iQ~v~l~i~d~lh~i 1265 (1674)
T KOG0951|consen 1216 LRIVKLTGETSLDLKLLQ------------------------KGQVIISTPEQWDLLQ------SIQQVDLFIVDELHLI 1265 (1674)
T ss_pred ceEEecCCccccchHHhh------------------------hcceEEechhHHHHHh------hhhhcceEeeehhhhh
Confidence 888888888876655433 2389999999986662 3567899999999976
Q ss_pred hhHhHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhccccC
Q 013826 165 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 244 (436)
Q Consensus 165 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~ 244 (436)
. ...+...+-+++ ++. +.......++.+.+|..+.+...- .+..
T Consensus 1266 g-g~~g~v~evi~S-~r~-------------------------------ia~q~~k~ir~v~ls~~lana~d~---ig~s 1309 (1674)
T KOG0951|consen 1266 G-GVYGAVYEVICS-MRY-------------------------------IASQLEKKIRVVALSSSLANARDL---IGAS 1309 (1674)
T ss_pred c-ccCCceEEEEee-HHH-------------------------------HHHHHHhheeEEEeehhhccchhh---cccc
Confidence 4 322222222222 110 000111334566777666543332 3333
Q ss_pred CceeeecCCccccCCccccceeeecc-----CcCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhhcc-----
Q 013826 245 HPLFLTTGETRYKLPERLESYKLICE-----SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGE----- 312 (436)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~~~~~l~~~~~----- 312 (436)
..-+++-.......+..++....... ........+..+.++ .+++++||++++++|..++..+-....
T Consensus 1310 ~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~ 1389 (1674)
T KOG0951|consen 1310 SSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPD 1389 (1674)
T ss_pred ccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHH
Confidence 33333333333333332222111111 111222222323332 467899999999999888776532211
Q ss_pred --------------cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecC-----------
Q 013826 313 --------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK----------- 367 (436)
Q Consensus 313 --------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~----------- 367 (436)
.....++-|-++.......+-..|..|.+.|+|.... -.|+-... +.|+.++.
T Consensus 1390 ~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~ 1467 (1674)
T KOG0951|consen 1390 YLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKA-HLVVVMGTQYYDGKEHSYE 1467 (1674)
T ss_pred HHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccc-eEEEEecceeecccccccc
Confidence 1122223377888877777888899999999999877 66766643 34443321
Q ss_pred CCChhHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHH
Q 013826 368 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQ 407 (436)
Q Consensus 368 ~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~ 407 (436)
+.++..+.|++|++.| .|+|+++++..+...+++++.
T Consensus 1468 ~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~ 1504 (1674)
T KOG0951|consen 1468 DYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLY 1504 (1674)
T ss_pred cCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhcc
Confidence 3458899999999988 569999999998888887763
No 144
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.72 E-value=3.2e-17 Score=137.49 Aligned_cols=147 Identities=22% Similarity=0.220 Sum_probs=92.0
Q ss_pred cccchhHHHHHhhhCCCCC---CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013826 5 SLFPVQVAVWQETIGPGLF---ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~---~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
+||+||.+++..+...+.. .+++++.+|||+|||.+++..+..... ++++++|+..|+.|+...+..+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 5899999999999976544 488999999999999987654554332 699999999999999999976654
Q ss_pred hhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCC----------CcccC
Q 013826 82 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR----------GFTLE 151 (436)
Q Consensus 82 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~----------~~~~~ 151 (436)
.. ............... ....................++++.|++.+........ .....
T Consensus 76 ~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
T PF04851_consen 76 EK-YNFFEKSIKPAYDSK---------EFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKN 145 (184)
T ss_dssp TS-EEEEE--GGGCCE-S---------EEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGG
T ss_pred hh-hhhcccccccccccc---------cccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccc
Confidence 32 111110000000000 00000000011112223456899999999987765321 12355
Q ss_pred CccEEEEehhhHHhhHh
Q 013826 152 HLCYLVVDETDRLLREA 168 (436)
Q Consensus 152 ~~~~iIiDE~h~~~~~~ 168 (436)
.++++|+||||++....
T Consensus 146 ~~~~vI~DEaH~~~~~~ 162 (184)
T PF04851_consen 146 KFDLVIIDEAHHYPSDS 162 (184)
T ss_dssp SESEEEEETGGCTHHHH
T ss_pred cCCEEEEehhhhcCCHH
Confidence 78999999999987765
No 145
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.71 E-value=2.9e-17 Score=116.16 Aligned_cols=77 Identities=36% Similarity=0.627 Sum_probs=72.9
Q ss_pred HHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCC
Q 013826 306 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 385 (436)
Q Consensus 306 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~ 385 (436)
+|++.+ +.+..+|++++..+|..+++.|.+++..+||+|+++++|+|+|.+++|++++.++++..|.|++||++|.|
T Consensus 2 ~L~~~~---~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKKG---IKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHTT---SSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHHCC---CcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 455555 89999999999999999999999999999999999999999999999999999999999999999999975
No 146
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=2.9e-15 Score=133.57 Aligned_cols=293 Identities=22% Similarity=0.308 Sum_probs=178.2
Q ss_pred CCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHH
Q 013826 22 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 101 (436)
Q Consensus 22 ~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 101 (436)
.+++.+++.+.||+|||...-.++++...... ..+...-|.+.-+.+++.... ..+++..+.-+|..-..++.
T Consensus 60 ~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~---~~v~CTQprrvaamsva~RVa---dEMDv~lG~EVGysIrfEdC- 132 (699)
T KOG0925|consen 60 LNNQIIVLVGETGSGKTTQIPQFVLEYELSHL---TGVACTQPRRVAAMSVAQRVA---DEMDVTLGEEVGYSIRFEDC- 132 (699)
T ss_pred hcCceEEEEecCCCCccccCcHHHHHHHHhhc---cceeecCchHHHHHHHHHHHH---HHhccccchhcccccccccc-
Confidence 35788999999999999876666666555432 346666688877777665443 33455555555554322221
Q ss_pred HhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHHhhHhHhhhHHHHHhhcc
Q 013826 102 ELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 181 (436)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~ 181 (436)
.++.. -.-+||.+.|++-....+. +..+++||+||||.-.- .-+.+..+++...
T Consensus 133 -------------~~~~T---------~Lky~tDgmLlrEams~p~--l~~y~viiLDeahERtl--ATDiLmGllk~v~ 186 (699)
T KOG0925|consen 133 -------------TSPNT---------LLKYCTDGMLLREAMSDPL--LGRYGVIILDEAHERTL--ATDILMGLLKEVV 186 (699)
T ss_pred -------------CChhH---------HHHHhcchHHHHHHhhCcc--cccccEEEechhhhhhH--HHHHHHHHHHHHH
Confidence 11111 1235777887776655443 77899999999995311 1122233332221
Q ss_pred cccccccccccccccccccccccccccccccccCCCCccceeeeeeccccccCchhhhccccCCceeeecCCccccCCcc
Q 013826 182 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 261 (436)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (436)
..+ +.++.+++|||. ...++...+...|.....+ . .+
T Consensus 187 ~~r-----------------------------------pdLk~vvmSatl--~a~Kfq~yf~n~Pll~vpg-~-----~P 223 (699)
T KOG0925|consen 187 RNR-----------------------------------PDLKLVVMSATL--DAEKFQRYFGNAPLLAVPG-T-----HP 223 (699)
T ss_pred hhC-----------------------------------CCceEEEeeccc--chHHHHHHhCCCCeeecCC-C-----Cc
Confidence 111 456889999998 4445555555555554333 1 11
Q ss_pred ccceeeeccCcCcHHHHHHHHH-------hcCCCcEEEEcCCchhHHHHHHHHhh----hcc--cceeEEEeccccchHH
Q 013826 262 LESYKLICESKLKPLYLVALLQ-------SLGEEKCIVFTSSVESTHRLCTLLNH----FGE--LRIKIKEYSGLQRQSV 328 (436)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~l~-------~~~~~~~lvf~~~~~~~~~~~~~l~~----~~~--~~~~~~~~~~~~~~~~ 328 (436)
..+....+...+++.+.++ ....+-+|||..+.++.+..++.+.. ++. ....+..++ +.+
T Consensus 224 ---vEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~ 296 (699)
T KOG0925|consen 224 ---VEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQ 296 (699)
T ss_pred ---eEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chh
Confidence 1122223333333333332 22467899999999988888888763 221 234555555 222
Q ss_pred HHHHHHHHhc---C--CeeEEEecCCcccccCCCCCCeEEEecC------------------CCChhHHHHHhhhcccCC
Q 013826 329 RSKTLKAFRE---G--KIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIKTYIHRAGRTARAG 385 (436)
Q Consensus 329 r~~~~~~f~~---g--~~~vlv~t~~~~~Gidi~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~~ 385 (436)
...+++.... | ..+|+|+|++.+..+.++++..||.-+. |.|-.+-.||.||+||.
T Consensus 297 qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt- 375 (699)
T KOG0925|consen 297 QQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT- 375 (699)
T ss_pred hccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-
Confidence 2332222211 2 4689999999999999999988885332 45777889999999997
Q ss_pred CCceEEEEecchh
Q 013826 386 QLGRCFTLLHKDE 398 (436)
Q Consensus 386 ~~g~~~~~~~~~~ 398 (436)
.+|+|+.+++...
T Consensus 376 ~pGkcfrLYte~~ 388 (699)
T KOG0925|consen 376 RPGKCFRLYTEEA 388 (699)
T ss_pred CCCceEEeecHHh
Confidence 4899999998654
No 147
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.65 E-value=6.3e-16 Score=140.24 Aligned_cols=329 Identities=13% Similarity=0.062 Sum_probs=199.4
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh
Q 013826 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 83 (436)
+....+|.+++..+. +|++.++.-.|.+||++.+.++..+..... +....++..|++++++...+.+.-.....
T Consensus 285 E~~~~~~~~~~~~~~----~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~~V~~~~I 358 (1034)
T KOG4150|consen 285 ESGIAISLELLKFAS----EGRADGGNEARQAGKGTCPTSGSRKFQTLC--HATNSLLPSEMVEHLRNGSKGQVVHVEVI 358 (1034)
T ss_pred cchhhhhHHHHhhhh----hcccccccchhhcCCccCcccchhhhhhcC--cccceecchhHHHHhhccCCceEEEEEeh
Confidence 346778988877665 488999999999999999888888776654 33468899999998876544332111110
Q ss_pred ----CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCC-C--cccCCccEE
Q 013826 84 ----GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-G--FTLEHLCYL 156 (436)
Q Consensus 84 ----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~-~--~~~~~~~~i 156 (436)
..-|....+.+. -+.....+.+.+++++.|+.......... . ..+-...++
T Consensus 359 ~~~K~A~V~~~D~~sE----------------------~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~ 416 (1034)
T KOG4150|consen 359 KARKSAYVEMSDKLSE----------------------TTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCK 416 (1034)
T ss_pred hhhhcceeecccCCCc----------------------hhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHh
Confidence 011111111111 12223445667999999988765443222 1 112234578
Q ss_pred EEehhhHHhhH---hHhhhHHHHHhhcccccccccccccccccccccccccccccccccccCCCCccceeeeeecccccc
Q 013826 157 VVDETDRLLRE---AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 233 (436)
Q Consensus 157 IiDE~h~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~ 233 (436)
++||+|.+... .....+..+.+++.....+ ...+.+-.++|+..
T Consensus 417 ~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~---------------------------------~~~~~~~~~~~~K~ 463 (1034)
T KOG4150|consen 417 DTNSCALYLFPTKALAQDQLRALSDLIKGFEAS---------------------------------INMGVYDGDTPYKD 463 (1034)
T ss_pred cccceeeeecchhhHHHHHHHHHHHHHHHHHhh---------------------------------cCcceEeCCCCcCC
Confidence 99999975433 1223344444444332211 12234444555543
Q ss_pred Cchhhhccc-cCCceeeecCCccccCCcccccee---------eeccCcCcHHHHHHHHHh--cCCCcEEEEcCCchhHH
Q 013826 234 DPNKLAQLD-LHHPLFLTTGETRYKLPERLESYK---------LICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTH 301 (436)
Q Consensus 234 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~~~~~~~ 301 (436)
...-.-... +.....+...... .....+. .....+.+......++.+ ..+-++|-||++++.|+
T Consensus 464 ~~~~~~~~~~~~E~~Li~~DGSP----s~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CE 539 (1034)
T KOG4150|consen 464 RTRLRSELANLSELELVTIDGSP----SSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCE 539 (1034)
T ss_pred HHHHHHHhcCCcceEEEEecCCC----CccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHH
Confidence 332222211 1111111111100 0000111 011112222222222222 13678999999999999
Q ss_pred HHHHHHhhhcc-----cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHH
Q 013826 302 RLCTLLNHFGE-----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 376 (436)
Q Consensus 302 ~~~~~l~~~~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q 376 (436)
.+....++.-. +-..+..+.|+....+|..+....--|+..-+|+|+.++.|||+.+++.|+..+.|.|+..+.|
T Consensus 540 L~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~Q 619 (1034)
T KOG4150|consen 540 LVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQ 619 (1034)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHH
Confidence 88777665421 1123556778888889998888888899999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCceEEEEecch
Q 013826 377 RAGRTARAGQLGRCFTLLHKD 397 (436)
Q Consensus 377 ~~GR~~R~~~~g~~~~~~~~~ 397 (436)
..||+||..++..++.+....
T Consensus 620 Q~GRAGRRNk~SLavyva~~~ 640 (1034)
T KOG4150|consen 620 QAGRAGRRNKPSLAVYVAFLG 640 (1034)
T ss_pred HhccccccCCCceEEEEEecc
Confidence 999999988777666665443
No 148
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.65 E-value=1.9e-15 Score=145.59 Aligned_cols=370 Identities=19% Similarity=0.191 Sum_probs=215.1
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
++++||.+.++....-...+-+.|+...+|-|||...+- ++..++..+.-.+.-+|++|+..|.. |..+|..|.+.
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIs-LitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaPS-- 469 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTIS-LITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAPS-- 469 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHH-HHHHHHHHcccCCCeEEeccccccCC-chhhccccccc--
Confidence 689999999998887777778999999999999987544 44455555445556999999998886 77788888653
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHH
Q 013826 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 164 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~ 164 (436)
+....+.|.......... +-....++|+++|++.+.. .+ ..+.--+..++||||.|++
T Consensus 470 v~~i~YkGtp~~R~~l~~-------------------qir~gKFnVLlTtyEyiik--dk-~lLsKI~W~yMIIDEGHRm 527 (1157)
T KOG0386|consen 470 VQKIQYKGTPQQRSGLTK-------------------QQRHGKFNVLLTTYEYIIK--DK-ALLSKISWKYMIIDEGHRM 527 (1157)
T ss_pred eeeeeeeCCHHHHhhHHH-------------------HHhcccceeeeeeHHHhcC--CH-HHHhccCCcceeecccccc
Confidence 455555555433332211 1112457999999988855 11 1122334569999999987
Q ss_pred hhHhHh--------hhHHHHHhhcccccccccccccc----cccccccccccccc--------cc--cc--cccCCCCcc
Q 013826 165 LREAYQ--------AWLPTVLQLTRSDNENRFSDAST----FLPSAFGSLKTIRR--------CG--VE--RGFKDKPYP 220 (436)
Q Consensus 165 ~~~~~~--------~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--------~~--~~--~~~~~~~~~ 220 (436)
-..... .....-+-++.++-.+..+..+. .++..+.++..... .+ .+ ....-....
T Consensus 528 KNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIr 607 (1157)
T KOG0386|consen 528 KNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIR 607 (1157)
T ss_pred cchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHH
Confidence 433211 11111111222222222111111 11111111111110 00 00 000000000
Q ss_pred ceeeee-----------eccccccCchhhhc------------------------------------------cccCCce
Q 013826 221 RLVKMV-----------LSATLTQDPNKLAQ------------------------------------------LDLHHPL 247 (436)
Q Consensus 221 ~~~~i~-----------~sat~~~~~~~~~~------------------------------------------~~~~~~~ 247 (436)
+.+.|+ ...-++..+..... ..+.+|+
T Consensus 608 RLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~ 687 (1157)
T KOG0386|consen 608 RLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPY 687 (1157)
T ss_pred HHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCch
Confidence 000000 00011111111111 1111222
Q ss_pred eeecCCccccCCccccceeeeccCcCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccc
Q 013826 248 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 325 (436)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 325 (436)
.+..........-. ........-|.+.+..++.+. .+.++|.||.-.....-+..+|.-.. +....+.|...
T Consensus 688 lf~~ve~~~~~~~~---~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~---~kYlRLDG~TK 761 (1157)
T KOG0386|consen 688 LFANVENSYTLHYD---IKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIRE---YKYLRLDGQTK 761 (1157)
T ss_pred hhhhhccccccccC---hhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhh---hheeeecCCcc
Confidence 11100000000000 011112344666666666544 47899999998888888888887444 77888899999
Q ss_pred hHHHHHHHHHHhcC---CeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhHHHH
Q 013826 326 QSVRSKTLKAFREG---KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 402 (436)
Q Consensus 326 ~~~r~~~~~~f~~g---~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~ 402 (436)
.++|.+.++.|..- -+.+|..|...+.|+|+.-++.||+|+..|++....|+.-|+.|.|+...|.++......+..
T Consensus 762 ~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sve 841 (1157)
T KOG0386|consen 762 VEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVE 841 (1157)
T ss_pred hhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHH
Confidence 99999999999964 356889999999999999999999999999999999999999999998777777655544443
Q ss_pred HHHH
Q 013826 403 KKLL 406 (436)
Q Consensus 403 ~~~~ 406 (436)
+.++
T Consensus 842 E~il 845 (1157)
T KOG0386|consen 842 EKIL 845 (1157)
T ss_pred HHHH
Confidence 3333
No 149
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.64 E-value=6.1e-14 Score=136.73 Aligned_cols=120 Identities=22% Similarity=0.249 Sum_probs=102.1
Q ss_pred CcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCC--eeEEEecC
Q 013826 273 LKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSSD 348 (436)
Q Consensus 273 ~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~t~ 348 (436)
-|...|.-+|++. .+.++|||+.-.+....+...|..++ +....+.|....++|+..+++|..+. +.++++|.
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHg---ylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTr 1336 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHG---YLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTR 1336 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcc---eEEEEecCCccHHHHHHHHHHhcCCCceEEEEEecc
Confidence 3455555555544 46799999999999999999998888 88999999999999999999999875 56788999
Q ss_pred CcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEec
Q 013826 349 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395 (436)
Q Consensus 349 ~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 395 (436)
..+.|||+.+++.||+||..|++..-.|..-||.|.|+...+.+|-.
T Consensus 1337 SggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRL 1383 (1958)
T KOG0391|consen 1337 SGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRL 1383 (1958)
T ss_pred CCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEe
Confidence 99999999999999999999999999999999999998766655543
No 150
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.63 E-value=1.4e-14 Score=115.94 Aligned_cols=121 Identities=39% Similarity=0.655 Sum_probs=90.9
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhh
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 104 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 104 (436)
+++++.+|||+|||.+++..+....... ...++++++|++.++.|+.+.+..+... +..+....++.......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~--~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL--KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE---- 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc--cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH----
Confidence 4689999999999999888777765542 4458999999999999999998887654 56677766665443332
Q ss_pred ccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHHhhHhHh
Q 013826 105 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 170 (436)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~~~~~~~ 170 (436)
.....+.+|+++|++.+........ .....++++|+||+|.+....+.
T Consensus 74 -----------------~~~~~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~~ 121 (144)
T cd00046 74 -----------------KLLSGKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGFG 121 (144)
T ss_pred -----------------HHhcCCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcchH
Confidence 1223456999999999988776543 33567899999999988665433
No 151
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=2.2e-14 Score=140.84 Aligned_cols=136 Identities=18% Similarity=0.219 Sum_probs=98.3
Q ss_pred cCcCcHHHHHHHHHh-c-CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEec
Q 013826 270 ESKLKPLYLVALLQS-L-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 347 (436)
Q Consensus 270 ~~~~~~~~l~~~l~~-~-~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t 347 (436)
....|...+.+.+.. + .+.++||-+.|++..+.+++.|...+ ++.-+++......|.+.+.++-..| .|.|+|
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~g---I~H~VLNAK~h~~EAeIVA~AG~~G--aVTIAT 683 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRK---IPHNVLNAKLHQKEAEIVAEAGQPG--TVTIAT 683 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcC---CcHHHhhccchhhHHHHHHhcCCCC--cEEEec
Confidence 334444444443332 2 56789999999999999999999876 5555566555444444444443344 789999
Q ss_pred CCcccccCCC--------CCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhH-------HHHHHHHHHhc
Q 013826 348 DAMTRGMDVE--------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-------KRFKKLLQKAD 410 (436)
Q Consensus 348 ~~~~~Gidi~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~-------~~~~~~~~~~~ 410 (436)
+|.++|.|+. +-=+||....+.|...-.|..||+||.|.+|.+..|++-.|. +++.++++.+.
T Consensus 684 NMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLmr~Fgs~ri~~~m~~~g 761 (1112)
T PRK12901 684 NMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSERIAKVMDRMG 761 (1112)
T ss_pred cCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHHHhhCcHHHHHHHHHcC
Confidence 9999999997 122577778899999999999999999999999888876542 34556665543
No 152
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.62 E-value=3.8e-14 Score=138.11 Aligned_cols=105 Identities=16% Similarity=0.118 Sum_probs=79.8
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhcc
Q 013826 27 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 106 (436)
Q Consensus 27 ~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 106 (436)
.+..+.+|||||-+++-.+.+.+..+ ..+|+++|...|..|+.+.++..+. +..+..++++.+......
T Consensus 163 ~i~~~~~GSGKTevyl~~i~~~l~~G----k~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~----- 231 (665)
T PRK14873 163 AVWQALPGEDWARRLAAAAAATLRAG----RGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYR----- 231 (665)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHcC----CeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHH-----
Confidence 34444569999999888777766543 3799999999999999999998874 256888999888776643
Q ss_pred ccccccccCCchhHHHhhcc-CCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhH
Q 013826 107 PKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 163 (436)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~-~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~ 163 (436)
.|..+.. ...|+|+|...+ ...++++++||+||-|.
T Consensus 232 -------------~w~~~~~G~~~IViGtRSAv--------FaP~~~LgLIIvdEEhd 268 (665)
T PRK14873 232 -------------RWLAVLRGQARVVVGTRSAV--------FAPVEDLGLVAIWDDGD 268 (665)
T ss_pred -------------HHHHHhCCCCcEEEEcceeE--------EeccCCCCEEEEEcCCc
Confidence 3444444 479999994333 24688999999999994
No 153
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.61 E-value=7.2e-14 Score=130.04 Aligned_cols=123 Identities=18% Similarity=0.247 Sum_probs=104.1
Q ss_pred cCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCC-eeEEEecC
Q 013826 272 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQVLVSSD 348 (436)
Q Consensus 272 ~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~vlv~t~ 348 (436)
..|...|.+++.+. .+.++|+|+.-.+....+.++|.-.+ +....+.|.....+|.++++.|...+ +-+|++|.
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~---Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTR 1103 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRG---YTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTR 1103 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhc---cceEEecCcchhhHHHHHHhhccCCceEEEEEecc
Confidence 34556677777654 46799999999999999999998776 88889999999999999999999765 46689999
Q ss_pred CcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCce--EEEEecch
Q 013826 349 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR--CFTLLHKD 397 (436)
Q Consensus 349 ~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~--~~~~~~~~ 397 (436)
..+.|||+..++.||+|++.|++..-.|.+-|+.|.|+... +|-++.+.
T Consensus 1104 AGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1104 AGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred cCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 99999999999999999999999999999999999998744 44444443
No 154
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.57 E-value=8.3e-13 Score=120.81 Aligned_cols=338 Identities=15% Similarity=0.158 Sum_probs=212.9
Q ss_pred HHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceE--------EEe--ccCcchhHHHHHhhccccccccccCCch
Q 013826 49 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSV--------GLA--VGQSSIADEISELIKRPKLEAGICYDPE 118 (436)
Q Consensus 49 ~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v--------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (436)
+...+-.+++||||+|++..|.++.+.+.++++.. ..+ ... .++.............|..-.....++.
T Consensus 30 ~RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~-~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~ 108 (442)
T PF06862_consen 30 FRDQGFTRPKVLILLPFRNSALRIVETLISLLPPG-KQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNN 108 (442)
T ss_pred hhccCCCCceEEEEcccHHHHHHHHHHHHHHcCcc-chHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCc
Confidence 34444567899999999999999999988876541 000 000 0000000000000011111111112211
Q ss_pred hH-------------HH-hhccCCcEEEeCchhHHHHhhcC----CC-cccCCccEEEEehhhHHhhHhHhhhHHHHHhh
Q 013826 119 DV-------------LQ-ELQSAVDILVATPGRLMDHINAT----RG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179 (436)
Q Consensus 119 ~~-------------~~-~~~~~~~Iii~T~~~l~~~l~~~----~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 179 (436)
+. .- .--.+.||||++|=.|...+... .+ --++++.++|+|.+|.+...+ .+++..++..
T Consensus 109 DD~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQN-W~Hv~~v~~~ 187 (442)
T PF06862_consen 109 DDCFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQN-WEHVLHVFEH 187 (442)
T ss_pred cceEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhh-HHHHHHHHHH
Confidence 11 11 11245799999999998888742 11 138999999999999886655 4567777777
Q ss_pred ccccccccccccccccccc-ccccccccccccccccCCCCccceeeeeeccccccCchhhhccccCCceee---ecCCc-
Q 013826 180 TRSDNENRFSDASTFLPSA-FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL---TTGET- 254 (436)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~---~~~~~- 254 (436)
+.........+.......| +...+. .-.|++++|+...+....+....+.+..-. .....
T Consensus 188 lN~~P~~~~~~DfsRVR~w~Ldg~a~---------------~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~ 252 (442)
T PF06862_consen 188 LNLQPKKSHDTDFSRVRPWYLDGQAK---------------YYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEA 252 (442)
T ss_pred hccCCCCCCCCCHHHHHHHHHcCcch---------------heeEeEEecCCCCHHHHHHHHhhCcCccceEEEeecccc
Confidence 7666555544444333333 222221 234899999998888777777655543211 11111
Q ss_pred ---cccCCccccceeee-------ccCcCcHHHHHH-H---HH-hcCCCcEEEEcCCchhHHHHHHHHhhhcccceeEEE
Q 013826 255 ---RYKLPERLESYKLI-------CESKLKPLYLVA-L---LQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE 319 (436)
Q Consensus 255 ---~~~~~~~~~~~~~~-------~~~~~~~~~l~~-~---l~-~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~ 319 (436)
...+...++..... ...+.+..+... + +. ....+++|||+||.-+--++.++|++.. ...+.
T Consensus 253 ~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~---~sF~~ 329 (442)
T PF06862_consen 253 SGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKEN---ISFVQ 329 (442)
T ss_pred ceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcC---CeEEE
Confidence 01111122222221 112223333222 2 22 3456789999999999999999999655 88888
Q ss_pred eccccchHHHHHHHHHHhcCCeeEEEecCCcc--cccCCCCCCeEEEecCCCChhHHHHHhhhcccCCC------CceEE
Q 013826 320 YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT--RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ------LGRCF 391 (436)
Q Consensus 320 ~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~--~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~------~g~~~ 391 (436)
++-..+..+...+-..|..|+.++|+.|.-+. .-..+.+++.||+|++|..+.-|...+.-...... ...|.
T Consensus 330 i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~ 409 (442)
T PF06862_consen 330 ISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVT 409 (442)
T ss_pred ecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEE
Confidence 88888898888999999999999999997544 66889999999999999998888777765555433 47999
Q ss_pred EEecchhHHHHHHHH
Q 013826 392 TLLHKDEVKRFKKLL 406 (436)
Q Consensus 392 ~~~~~~~~~~~~~~~ 406 (436)
+++++.|...++.+.
T Consensus 410 ~lysk~D~~~LErIV 424 (442)
T PF06862_consen 410 VLYSKYDALRLERIV 424 (442)
T ss_pred EEecHhHHHHHHHHh
Confidence 999999999988886
No 155
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.57 E-value=1.1e-14 Score=104.38 Aligned_cols=81 Identities=43% Similarity=0.709 Sum_probs=74.9
Q ss_pred HHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhc
Q 013826 302 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 381 (436)
Q Consensus 302 ~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~ 381 (436)
.+++.|+..+ ..+..+||.++..+|...++.|.++...+||+|+++++|+|+|.++.|++++++++...|.|++||+
T Consensus 2 ~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELG---IKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCC---CeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4566676654 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 013826 382 ARAG 385 (436)
Q Consensus 382 ~R~~ 385 (436)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9965
No 156
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.54 E-value=8.9e-13 Score=118.15 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=90.5
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcC-CeeEEEec-CCcccccCCCCCCeEEE
Q 013826 287 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVLVSS-DAMTRGMDVEGVNNVVN 364 (436)
Q Consensus 287 ~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~t-~~~~~Gidi~~~~~vi~ 364 (436)
.-|.|||..-......+.-.|...| +.+..+.|+|++..|+..++.|.++ +|+|.+.+ ...+..+|+..+..|++
T Consensus 638 t~KsIVFSQFTSmLDLi~~rL~kaG---fscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFm 714 (791)
T KOG1002|consen 638 TAKSIVFSQFTSMLDLIEWRLGKAG---FSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFM 714 (791)
T ss_pred chhhhhHHHHHHHHHHHHHHhhccC---ceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEe
Confidence 3478888887777777777777666 9999999999999999999999987 67775544 77888899999999999
Q ss_pred ecCCCChhHHHHHhhhcccCCCC--ceEEEEecch
Q 013826 365 YDKPAYIKTYIHRAGRTARAGQL--GRCFTLLHKD 397 (436)
Q Consensus 365 ~~~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~ 397 (436)
+++=|++.--.|..-|+.|.|+. -+++.|+-..
T Consensus 715 mDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 715 MDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred ecccccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 99999999999999999999876 4556665544
No 157
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.51 E-value=1.4e-12 Score=128.95 Aligned_cols=339 Identities=19% Similarity=0.156 Sum_probs=185.8
Q ss_pred ccchhHHHHHhhhCCCCC--CCc--EEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013826 6 LFPVQVAVWQETIGPGLF--ERD--LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~--~~~--~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
-+.+|-.|++.+..--.+ .+. ++-.|.||+|||++=.- ++..+... ..+.|..|..-.+.|..|+=+.+++.+.
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd~-~~g~RfsiALGLRTLTLQTGda~r~rL~ 486 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRDD-KQGARFAIALGLRSLTLQTGHALKTRLN 486 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCCC-CCCceEEEEccccceeccchHHHHHhcC
Confidence 356888887766542111 122 45589999999996443 33333332 3566888999999999999999998765
Q ss_pred hhCceEEEeccCcchhHHHHHhhcc------------cc----------ccccccCCchhHHHhhc--------cCCcEE
Q 013826 82 AVGLSVGLAVGQSSIADEISELIKR------------PK----------LEAGICYDPEDVLQELQ--------SAVDIL 131 (436)
Q Consensus 82 ~~~~~v~~~~~~~~~~~~~~~~~~~------------~~----------~~~~~~~~~~~~~~~~~--------~~~~Ii 131 (436)
-..-...++.|+.....-....... +. ...............+. -...|+
T Consensus 487 L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~ 566 (1110)
T TIGR02562 487 LSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVL 566 (1110)
T ss_pred CCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeE
Confidence 5455677778876654433211100 00 00000111111222222 125799
Q ss_pred EeCchhHHHHhh--cCCCcccC----CccEEEEehhhHHhhHhHhhhHHHHHhhcccccccccccccccccccccccccc
Q 013826 132 VATPGRLMDHIN--ATRGFTLE----HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 205 (436)
Q Consensus 132 i~T~~~l~~~l~--~~~~~~~~----~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (436)
|||++.++.... +.....+. .-+.+||||+|.+.... ...+..++.....
T Consensus 567 V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~----------------------- 622 (1110)
T TIGR02562 567 VCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGL----------------------- 622 (1110)
T ss_pred EecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHH-----------------------
Confidence 999999987763 22222111 13589999999774443 3344444442221
Q ss_pred cccccccccCCCCccceeeeeeccccccCchhhhc-cc----------cC---Cceeee-cCCccc-----cCC------
Q 013826 206 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LD----------LH---HPLFLT-TGETRY-----KLP------ 259 (436)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~-~~----------~~---~~~~~~-~~~~~~-----~~~------ 259 (436)
...+++++|||+++....... .+ .. .+..+. .-.++. ...
T Consensus 623 --------------lG~~VlLmSATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~ 688 (1110)
T TIGR02562 623 --------------LGSRVLLSSATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFI 688 (1110)
T ss_pred --------------cCCCEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHH
Confidence 223578889998865322111 00 00 000000 000000 000
Q ss_pred -----------------ccccceeee-ccCc-----CcHHHHHHHH-----Hhc---------CCCc---EEEEcCCchh
Q 013826 260 -----------------ERLESYKLI-CESK-----LKPLYLVALL-----QSL---------GEEK---CIVFTSSVES 299 (436)
Q Consensus 260 -----------------~~~~~~~~~-~~~~-----~~~~~l~~~l-----~~~---------~~~~---~lvf~~~~~~ 299 (436)
...+...+. .... .....+...+ ..+ .+++ +||-+.+++.
T Consensus 689 ~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p 768 (1110)
T TIGR02562 689 QRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDP 768 (1110)
T ss_pred HHHHHHHHHHHHHHhcCcccceEEEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchH
Confidence 000000110 0111 0111122222 111 1122 7888889999
Q ss_pred HHHHHHHHhhhcc---cceeEEEeccccchHHHHHHHHHH----------------------hc----CCeeEEEecCCc
Q 013826 300 THRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAF----------------------RE----GKIQVLVSSDAM 350 (436)
Q Consensus 300 ~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~r~~~~~~f----------------------~~----g~~~vlv~t~~~ 350 (436)
+-.++..|.+... ..+.+++||+......|..+.+.. ++ +...|+|+|+++
T Consensus 769 ~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~ 848 (1110)
T TIGR02562 769 LIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVE 848 (1110)
T ss_pred HHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeE
Confidence 9888888876532 335688999988766666544332 12 356899999999
Q ss_pred ccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCC
Q 013826 351 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 387 (436)
Q Consensus 351 ~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~ 387 (436)
+.|+|+ +.+.+|. .+.++.+++|++||+.|.+..
T Consensus 849 E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 849 EVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred EEEecc-cCCeeee--ccCcHHHHHHHhhcccccccC
Confidence 999999 4555543 345599999999999997754
No 158
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.49 E-value=6.5e-12 Score=117.24 Aligned_cols=105 Identities=18% Similarity=0.196 Sum_probs=85.6
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhc--CCeeEE-EecCCcccccCCCCCCeE
Q 013826 286 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE--GKIQVL-VSSDAMTRGMDVEGVNNV 362 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vl-v~t~~~~~Gidi~~~~~v 362 (436)
...+++|...=.....-+...+++.+ .....++|.....+|.++++.|.. |..+|+ +.-...+.|+|+-+.+++
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g---~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHl 821 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGG---HIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHL 821 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCC---eeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceE
Confidence 44566666554555556666677666 888999999999999999999984 445555 444778899999999999
Q ss_pred EEecCCCChhHHHHHhhhcccCCCCceEEEE
Q 013826 363 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 393 (436)
Q Consensus 363 i~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 393 (436)
++++..|+++--.|..-|+-|.|++..++++
T Consensus 822 ilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 822 ILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred EEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 9999999999999999999999999888776
No 159
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.44 E-value=8.5e-13 Score=117.17 Aligned_cols=78 Identities=18% Similarity=0.126 Sum_probs=65.4
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhc--CCccEEEEcCCHHHHHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~lil~P~~~l~~q~~~~~~~ 78 (436)
|.|+ +||.|.+.++.+...+..++++++.+|||+|||++++.+++.++...+. +..+++|+++|..+..|....++.
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 5675 6999999999999888889999999999999999999999877665432 124899999999998888777776
Q ss_pred h
Q 013826 79 I 79 (436)
Q Consensus 79 ~ 79 (436)
.
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 5
No 160
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.44 E-value=8.5e-13 Score=117.17 Aligned_cols=78 Identities=18% Similarity=0.126 Sum_probs=65.4
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhc--CCccEEEEcCCHHHHHHHHHHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~lil~P~~~l~~q~~~~~~~ 78 (436)
|.|+ +||.|.+.++.+...+..++++++.+|||+|||++++.+++.++...+. +..+++|+++|..+..|....++.
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 5675 6999999999999888889999999999999999999999877665432 124899999999998888777776
Q ss_pred h
Q 013826 79 I 79 (436)
Q Consensus 79 ~ 79 (436)
.
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 5
No 161
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.43 E-value=7.9e-13 Score=100.57 Aligned_cols=105 Identities=19% Similarity=0.160 Sum_probs=65.3
Q ss_pred CCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHH
Q 013826 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 102 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 102 (436)
+++-.++..++|+|||.-.+.-++..... ++.++|+|.||+.++.++.+.++.. ++......-..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~---~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~~-------- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK---RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARMR-------- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH---TT--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS---------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH---ccCeEEEecccHHHHHHHHHHHhcC----CcccCceeeec--------
Confidence 45667899999999998544433333222 5668999999999998888777633 33322211111
Q ss_pred hhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHH
Q 013826 103 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 164 (436)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~ 164 (436)
....+.-|-++|+..+.+.+.. + ....++++||+||||..
T Consensus 68 --------------------~~~g~~~i~vMc~at~~~~~~~-p-~~~~~yd~II~DEcH~~ 107 (148)
T PF07652_consen 68 --------------------THFGSSIIDVMCHATYGHFLLN-P-CRLKNYDVIIMDECHFT 107 (148)
T ss_dssp -----------------------SSSSEEEEEHHHHHHHHHT-S-SCTTS-SEEEECTTT--
T ss_pred --------------------cccCCCcccccccHHHHHHhcC-c-ccccCccEEEEeccccC
Confidence 0112237889999999887765 2 44679999999999964
No 162
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.42 E-value=6.4e-12 Score=120.75 Aligned_cols=119 Identities=19% Similarity=0.199 Sum_probs=96.9
Q ss_pred HHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhhcc-------------------cceeEEEeccccchHHHHHHHHH
Q 013826 277 YLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGE-------------------LRIKIKEYSGLQRQSVRSKTLKA 335 (436)
Q Consensus 277 ~l~~~l~~~--~~~~~lvf~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~~~~~~~~~~r~~~~~~ 335 (436)
.|.++++.. -+.+.|||..|......|-.+|.-... .+.....+.|.....+|......
T Consensus 1130 LLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~ 1209 (1567)
T KOG1015|consen 1130 LLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEE 1209 (1567)
T ss_pred hHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHH
Confidence 455555443 367999999999988888888753211 12346667788889999999999
Q ss_pred HhcC----CeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEec
Q 013826 336 FREG----KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 395 (436)
Q Consensus 336 f~~g----~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 395 (436)
|.+- ..-+||+|.+.+.|||+-.++.||+|+..|+|..-.|.+=|+-|.|+...||+|-.
T Consensus 1210 FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRf 1273 (1567)
T KOG1015|consen 1210 FNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRF 1273 (1567)
T ss_pred hcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhh
Confidence 9863 23479999999999999999999999999999999999999999999999999843
No 163
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.41 E-value=3.4e-11 Score=116.33 Aligned_cols=102 Identities=17% Similarity=0.282 Sum_probs=75.3
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCC--CeEE
Q 013826 286 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV--NNVV 363 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~--~~vi 363 (436)
.++++-||+.|...++.+++..+... ..+..+++..+..+ ++.+ ++.+|++-|+++..|+++... +-|+
T Consensus 281 ~gknIcvfsSt~~~~~~v~~~~~~~~---~~Vl~l~s~~~~~d----v~~W--~~~~VviYT~~itvG~Sf~~~HF~~~f 351 (824)
T PF02399_consen 281 AGKNICVFSSTVSFAEIVARFCARFT---KKVLVLNSTDKLED----VESW--KKYDVVIYTPVITVGLSFEEKHFDSMF 351 (824)
T ss_pred CCCcEEEEeChHHHHHHHHHHHHhcC---CeEEEEcCCCCccc----cccc--cceeEEEEeceEEEEeccchhhceEEE
Confidence 46788899999999999999988775 77888877665542 2222 468999999999999999753 3355
Q ss_pred EecCC----CChhHHHHHhhhcccCCCCceEEEEecch
Q 013826 364 NYDKP----AYIKTYIHRAGRTARAGQLGRCFTLLHKD 397 (436)
Q Consensus 364 ~~~~~----~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 397 (436)
.|-.| .++.+..|++||+ |.-...+.+++++..
T Consensus 352 ~yvk~~~~gpd~~s~~Q~lgRv-R~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 352 AYVKPMSYGPDMVSVYQMLGRV-RSLLDNEIYVYIDAS 388 (824)
T ss_pred EEecCCCCCCcHHHHHHHHHHH-HhhccCeEEEEEecc
Confidence 44323 2355689999999 544578889988764
No 164
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.41 E-value=4.8e-11 Score=121.92 Aligned_cols=114 Identities=21% Similarity=0.186 Sum_probs=77.0
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHh
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 103 (436)
++.++|+--+|||||++.+..+...+.. ...++++||+-.++|-.|+..++..+...... .. ...+.
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~~A~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~-~~---~~~s~------- 339 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKLARLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN-DP---KAEST------- 339 (962)
T ss_pred CCceEEEeecCCchHHHHHHHHHHHHhc--cCCCeEEEEechHHHHHHHHHHHHHHHHhhhh-cc---cccCH-------
Confidence 4679999999999999876655554444 47789999999999999999999988643211 11 11111
Q ss_pred hccccccccccCCchhHHHhhcc-CCcEEEeCchhHHHHhhcCCCcccCC-ccEEEEehhhHH
Q 013826 104 IKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEH-LCYLVVDETDRL 164 (436)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~-~~~Iii~T~~~l~~~l~~~~~~~~~~-~~~iIiDE~h~~ 164 (436)
..+.+.+.. ...|+|+|.++|.............+ --++|+||||+-
T Consensus 340 --------------~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS 388 (962)
T COG0610 340 --------------SELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS 388 (962)
T ss_pred --------------HHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc
Confidence 112222222 24899999999988776541111222 237899999975
No 165
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.39 E-value=7.1e-12 Score=121.65 Aligned_cols=120 Identities=25% Similarity=0.261 Sum_probs=89.4
Q ss_pred hCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchh
Q 013826 18 IGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 97 (436)
Q Consensus 18 ~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~ 97 (436)
+..+.-....+..+.||-|||+++.+|+.-... .+..+.+++...-|+..-++++.+++.++|+.+++...+.+..
T Consensus 87 iG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL----~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~ 162 (822)
T COG0653 87 LGGIVLHLGDIAEMRTGEGKTLVATLPAYLNAL----AGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAGMSPE 162 (822)
T ss_pred hhhhhhcCCceeeeecCCchHHHHHHHHHHHhc----CCCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCCCChH
Confidence 333334677899999999999999888764333 4457999999999999999999999999999999999988655
Q ss_pred HHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhH-HHHhhcC-----CCcccCCccEEEEehhhHH
Q 013826 98 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHLCYLVVDETDRL 164 (436)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~l~~~-----~~~~~~~~~~iIiDE~h~~ 164 (436)
.+.. ...++|..+|...| ++.+..+ .......+.+.|+||++.+
T Consensus 163 ek~~-----------------------aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSI 212 (822)
T COG0653 163 EKRA-----------------------AYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSI 212 (822)
T ss_pred HHHH-----------------------HHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhe
Confidence 5432 23469999998666 2222222 1223556889999999974
No 166
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.34 E-value=2.6e-11 Score=126.53 Aligned_cols=119 Identities=21% Similarity=0.212 Sum_probs=101.3
Q ss_pred CcHHHHHHHH-Hh--cCCC--cEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcC--CeeEEE
Q 013826 273 LKPLYLVALL-QS--LGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG--KIQVLV 345 (436)
Q Consensus 273 ~~~~~l~~~l-~~--~~~~--~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vlv 345 (436)
.+...+.+++ .. ..+. ++++|+........+..+++..+ .....++|.++...|...++.|.++ ..-+++
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~---~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~ll 768 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALG---IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLL 768 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcC---CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEE
Confidence 4555565655 22 2344 89999999999999999999876 7889999999999999999999986 455677
Q ss_pred ecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEe
Q 013826 346 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 394 (436)
Q Consensus 346 ~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~ 394 (436)
++...+.|+|+..+++|+++++.|++....|...|+.|.|++..+.++-
T Consensus 769 s~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r 817 (866)
T COG0553 769 SLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYR 817 (866)
T ss_pred EecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEE
Confidence 7789999999999999999999999999999999999999887666664
No 167
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.27 E-value=1.7e-11 Score=111.16 Aligned_cols=133 Identities=20% Similarity=0.162 Sum_probs=79.9
Q ss_pred hhHHHHHhhhCCC---------CCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCC--ccEEEEcCCHHHHHHHHHHHH
Q 013826 9 VQVAVWQETIGPG---------LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC--LRALVVLPTRDLALQVKDVFA 77 (436)
Q Consensus 9 ~Q~~a~~~~~~~~---------~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~--~~~lil~P~~~l~~q~~~~~~ 77 (436)
||.+++...+... ...+.++++..+|+|||..++..+. .+....... .++||++|. .+..||..++.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 5777776665433 3457899999999999988655444 333322111 249999999 88899999999
Q ss_pred HhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCC--CcccCCccE
Q 013826 78 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR--GFTLEHLCY 155 (436)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~--~~~~~~~~~ 155 (436)
.++.....++....|........ .......+++|+|++.+........ .+...++++
T Consensus 79 ~~~~~~~~~v~~~~~~~~~~~~~---------------------~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~ 137 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSERRRLS---------------------KNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDR 137 (299)
T ss_dssp HHSGT-TS-EEEESSSCHHHHTT---------------------SSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEE
T ss_pred ccccccccccccccccccccccc---------------------ccccccceeeecccccccccccccccccccccccee
Confidence 99865456777777665111110 1122345899999999981111000 012234899
Q ss_pred EEEehhhHH
Q 013826 156 LVVDETDRL 164 (436)
Q Consensus 156 iIiDE~h~~ 164 (436)
||+||+|.+
T Consensus 138 vIvDEaH~~ 146 (299)
T PF00176_consen 138 VIVDEAHRL 146 (299)
T ss_dssp EEETTGGGG
T ss_pred EEEeccccc
Confidence 999999987
No 168
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=1.4e-09 Score=98.93 Aligned_cols=262 Identities=18% Similarity=0.193 Sum_probs=163.2
Q ss_pred cCCcEEEeCchhHHHHhhcCCC----c-ccCCccEEEEehhhHHhhHhHhhhHHHHHhhccccccccccccccccccc-c
Q 013826 126 SAVDILVATPGRLMDHINATRG----F-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA-F 199 (436)
Q Consensus 126 ~~~~Iii~T~~~l~~~l~~~~~----~-~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~ 199 (436)
...+|+||+|-.|..++....+ + -++++.++|||.+|.++... .+++..++.++.......+.........| +
T Consensus 384 y~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~~DfSRVR~wyL 462 (698)
T KOG2340|consen 384 YKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHDVDFSRVRMWYL 462 (698)
T ss_pred cccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCcccccCCChhheehhee
Confidence 4579999999999888873222 2 37889999999999887665 45677888887765554444333333222 2
Q ss_pred cccccccccccccccCCCCccceeeeeeccccccCchhhhccccCCcee-------eec-C--CccccCCccccce---e
Q 013826 200 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLF-------LTT-G--ETRYKLPERLESY---K 266 (436)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~-------~~~-~--~~~~~~~~~~~~~---~ 266 (436)
..... .-.|++++|.-..+....+....+.+.-- ... . ....++....+.. .
T Consensus 463 ~~qsr---------------~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~s 527 (698)
T KOG2340|consen 463 DGQSR---------------YFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKS 527 (698)
T ss_pred ccHHH---------------HHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccC
Confidence 11111 11255666655444444333333322110 000 0 0001111111111 1
Q ss_pred eeccCcCcHHHHH-HHHHhc---CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCee
Q 013826 267 LICESKLKPLYLV-ALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 342 (436)
Q Consensus 267 ~~~~~~~~~~~l~-~~l~~~---~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 342 (436)
+....+.+..+.. .++-+. ....+||+.|+.-.--++..++++.. +....++-........++-+-|-.|...
T Consensus 528 i~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~---i~F~~i~EYssk~~vsRAR~lF~qgr~~ 604 (698)
T KOG2340|consen 528 IIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEE---ISFVMINEYSSKSKVSRARELFFQGRKS 604 (698)
T ss_pred cccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhh---cchHHHhhhhhHhhhhHHHHHHHhcCce
Confidence 2222233333332 233222 34578999999999999999998765 6666666656666666777889999999
Q ss_pred EEEecCCcc--cccCCCCCCeEEEecCCCChh---HHHHHhhhcccCCC----CceEEEEecchhHHHHHHHH
Q 013826 343 VLVSSDAMT--RGMDVEGVNNVVNYDKPAYIK---TYIHRAGRTARAGQ----LGRCFTLLHKDEVKRFKKLL 406 (436)
Q Consensus 343 vlv~t~~~~--~Gidi~~~~~vi~~~~~~s~~---~~~Q~~GR~~R~~~----~g~~~~~~~~~~~~~~~~~~ 406 (436)
+|+.|.-+. .-.++.++..||+|.+|..|. +++.+.+|..-.|+ .-.|.+++++.|.-+++++.
T Consensus 605 vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 605 VLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred EEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhh
Confidence 999997544 668999999999999998865 45677777655442 26789999999988888775
No 169
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=99.02 E-value=2.6e-07 Score=87.25 Aligned_cols=47 Identities=23% Similarity=0.192 Sum_probs=40.6
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHH
Q 013826 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 49 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~ 49 (436)
+| +|+..|.+-++.++.-+..|+-.|+..|||||||+..+-+++.++
T Consensus 13 Py-~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 13 PY-TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CC-CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 45 589999999999988888899999999999999998777777665
No 170
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.98 E-value=9.7e-08 Score=87.02 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=61.1
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
|.|...+|.|.+-+.++-..+..+.++++.+|+|+|||.+.+-.+......-+....+.++.+-|..-.+....+++.+
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHH
Confidence 5678899999999998888888899999999999999987665555554444445558999988877766666665544
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.89 E-value=1.8e-08 Score=87.02 Aligned_cols=129 Identities=23% Similarity=0.210 Sum_probs=90.5
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.|++.|.-+.-.. .+.-|..+.||-|||+++.+++.-... .+..|-|++.+..|+..-++++..++..+|
T Consensus 77 ~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l~a~~~AL----~G~~V~vvT~NdyLA~RD~~~~~~~y~~LG 146 (266)
T PF07517_consen 77 RPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAALPAALNAL----QGKGVHVVTSNDYLAKRDAEEMRPFYEFLG 146 (266)
T ss_dssp ---HHHHHHHHHH------HTTSEEEESTTSHHHHHHHHHHHHHHT----TSS-EEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHhhhhhc------ccceeEEecCCCCcHHHHHHHHHHHHH----hcCCcEEEeccHHHhhccHHHHHHHHHHhh
Confidence 4777787665443 233499999999999988776654433 445799999999999999999999999999
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHH-HhhcCCC-----cccCCccEEEE
Q 013826 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD-HINATRG-----FTLEHLCYLVV 158 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~-~l~~~~~-----~~~~~~~~iIi 158 (436)
+.+....++.+....... ..++|+++|...+.- .|..+.. .....++++||
T Consensus 147 lsv~~~~~~~~~~~r~~~-----------------------Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~iv 203 (266)
T PF07517_consen 147 LSVGIITSDMSSEERREA-----------------------YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIV 203 (266)
T ss_dssp --EEEEETTTEHHHHHHH-----------------------HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEE
T ss_pred hccccCccccCHHHHHHH-----------------------HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEE
Confidence 999999998875443221 234899999988743 3333211 12568999999
Q ss_pred ehhhHHhh
Q 013826 159 DETDRLLR 166 (436)
Q Consensus 159 DE~h~~~~ 166 (436)
||++.++-
T Consensus 204 DEvDs~Li 211 (266)
T PF07517_consen 204 DEVDSILI 211 (266)
T ss_dssp CTHHHHTT
T ss_pred eccceEEE
Confidence 99998753
No 172
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.88 E-value=9.1e-09 Score=83.86 Aligned_cols=113 Identities=21% Similarity=0.271 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcc-cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC--CcccccCCCC--CC
Q 013826 286 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD--AMTRGMDVEG--VN 360 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~--~~~~Gidi~~--~~ 360 (436)
.++++|||++|.+..+.+.+.+++... .+..+..- +..++...++.|++++-.||+++. .+++|+|+|+ ++
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r 83 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLR 83 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhh
Confidence 358999999999999999999986541 11222222 355678999999999999999998 9999999996 77
Q ss_pred eEEEecCCCC------------------------------hhHHHHHhhhcccCCCC-ceEEEEecchhHHHH
Q 013826 361 NVVNYDKPAY------------------------------IKTYIHRAGRTARAGQL-GRCFTLLHKDEVKRF 402 (436)
Q Consensus 361 ~vi~~~~~~s------------------------------~~~~~Q~~GR~~R~~~~-g~~~~~~~~~~~~~~ 402 (436)
.||+...|.. ...+.|.+||+.|...+ |.++++..+.....+
T Consensus 84 ~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R~~~~~y 156 (167)
T PF13307_consen 84 AVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSRFLSKRY 156 (167)
T ss_dssp EEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGGGGGHHH
T ss_pred eeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCccccchh
Confidence 8998887621 11236999999998765 444444333333333
No 173
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.85 E-value=2.2e-08 Score=100.06 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=42.0
Q ss_pred CeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccC
Q 013826 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 384 (436)
Q Consensus 340 ~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 384 (436)
..+++++.+++.+|+|-|++-+++-+....|...-.|.+||+.|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 578999999999999999999999999888999999999999994
No 174
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.79 E-value=2.5e-08 Score=87.01 Aligned_cols=70 Identities=27% Similarity=0.298 Sum_probs=48.9
Q ss_pred cccchhHHHHHhhhCCCCCCCc-EEEECCCCchHHHHhHHHHHHHHH----HhhcCCccEEEEcCCHHHHHHHHHHHHH
Q 013826 5 SLFPVQVAVWQETIGPGLFERD-LCINSPTGSGKTLSYALPIVQTLS----NRAVRCLRALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~-~i~~~~tGsGKT~~~~~~~~~~~~----~~~~~~~~~lil~P~~~l~~q~~~~~~~ 78 (436)
+|++.|.+|+..++. ... .+|++|+|||||.+....+...+. .....+.++|+++|+..-+++..+.+..
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 478899999988765 555 899999999999765443333311 1134667899999999999999988887
No 175
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.78 E-value=3.3e-09 Score=103.96 Aligned_cols=116 Identities=22% Similarity=0.290 Sum_probs=89.7
Q ss_pred CCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHH
Q 013826 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 102 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 102 (436)
...++++-+|||+|||..+-+++...+... +..++++++|.++|+......+.......|+.+.-..|+...+..
T Consensus 942 td~~~~~g~ptgsgkt~~ae~a~~~~~~~~--p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~~--- 1016 (1230)
T KOG0952|consen 942 TDLNFLLGAPTGSGKTVVAELAIFRALSYY--PGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPDVK--- 1016 (1230)
T ss_pred cchhhhhcCCccCcchhHHHHHHHHHhccC--CCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCChh---
Confidence 356788999999999999888877666554 567999999999999988887776654448888888888765422
Q ss_pred hhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCC-cccCCccEEEEehhhHH
Q 013826 103 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRL 164 (436)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~-~~~~~~~~iIiDE~h~~ 164 (436)
.-..++++|+||+++-...+.+.. .-+.++..+|+||.|..
T Consensus 1017 ---------------------~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hll 1058 (1230)
T KOG0952|consen 1017 ---------------------AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLL 1058 (1230)
T ss_pred ---------------------heecCceEEcccccccCccccccchhhhccccceeecccccc
Confidence 123459999999999776664433 23778999999999966
No 176
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.73 E-value=7.7e-07 Score=84.98 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=107.3
Q ss_pred CcEEEEcCCchhHHHHHHHHhhhcc---------------cceeEEEeccccchHHHHHHHHHHhcC---CeeEEEecCC
Q 013826 288 EKCIVFTSSVESTHRLCTLLNHFGE---------------LRIKIKEYSGLQRQSVRSKTLKAFREG---KIQVLVSSDA 349 (436)
Q Consensus 288 ~~~lvf~~~~~~~~~~~~~l~~~~~---------------~~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~vlv~t~~ 349 (436)
.++|||..+......+.+.|...-. .......+.|.....+|+.++++|.+. .+-++++|..
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 4889998888877777777754310 012344566777888999999999863 2457788999
Q ss_pred cccccCCCCCCeEEEecCCCChhHHHHHhhhcccCCCCceEEEEecchhHHHHHHHHHH-hcCCC---------CCCCCC
Q 013826 350 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK-ADNDS---------CPIHSI 419 (436)
Q Consensus 350 ~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~ 419 (436)
...|||+-..+.+++++..|++-.-.|.+-|+.|.|+...|++|-.--|...-+++... +.+++ -+...+
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np~an~ 879 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANPDANI 879 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCccccc
Confidence 99999999999999999999999999999999999999999999766665554444422 33322 244556
Q ss_pred ChhhhhhhhhccccC
Q 013826 420 PSSLIESLRPVYKSG 434 (436)
Q Consensus 420 ~~~~~~~~~~~~~~~ 434 (436)
+.+.+++|--.+++.
T Consensus 880 s~Ke~enLl~~~ea~ 894 (1387)
T KOG1016|consen 880 SQKELENLLMYDEAQ 894 (1387)
T ss_pred cHHHHHHHhhhhhcc
Confidence 666666665544443
No 177
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.57 E-value=2.2e-06 Score=83.14 Aligned_cols=74 Identities=19% Similarity=0.268 Sum_probs=55.1
Q ss_pred CeeEEEecCCcccccCCCCCCeEEEecCCCChhHHHHHhhhcccCC--CCce-----------EEEEecchhHHHHHHHH
Q 013826 340 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG--QLGR-----------CFTLLHKDEVKRFKKLL 406 (436)
Q Consensus 340 ~~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~--~~g~-----------~~~~~~~~~~~~~~~~~ 406 (436)
..+++++..++-+|+|-|++-.++-+....|..+=.|.+||+.|.. +.|. ..+++........+.+.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999932 1222 22334444455555565
Q ss_pred HHhcCCC
Q 013826 407 QKADNDS 413 (436)
Q Consensus 407 ~~~~~~~ 413 (436)
+.++.+.
T Consensus 563 kEI~~~s 569 (985)
T COG3587 563 KEINDES 569 (985)
T ss_pred HHHHHhh
Confidence 5554443
No 178
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.49 E-value=1.4e-06 Score=82.08 Aligned_cols=80 Identities=20% Similarity=0.188 Sum_probs=64.7
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+|+.+|+.-|..|..+++. +.-.||++|+|+|||.+....+++.+.. ...++|+++|+..-++|+++.+.+.
T Consensus 406 ~~lpkLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~---~~~~VLvcApSNiAVDqLaeKIh~t- 477 (935)
T KOG1802|consen 406 PNLPKLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ---HAGPVLVCAPSNIAVDQLAEKIHKT- 477 (935)
T ss_pred CCchhhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHh---cCCceEEEcccchhHHHHHHHHHhc-
Confidence 4778899999999888774 7789999999999999877767766655 3447999999999999999999876
Q ss_pred hhhCceEEEec
Q 013826 81 PAVGLSVGLAV 91 (436)
Q Consensus 81 ~~~~~~v~~~~ 91 (436)
|+.|.=+.
T Consensus 478 ---gLKVvRl~ 485 (935)
T KOG1802|consen 478 ---GLKVVRLC 485 (935)
T ss_pred ---CceEeeee
Confidence 55554333
No 179
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.48 E-value=3.3e-07 Score=88.94 Aligned_cols=76 Identities=18% Similarity=0.145 Sum_probs=61.9
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh-------------------------------
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------------------------------- 53 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~------------------------------- 53 (436)
+||+.|..-+..++.-+...+++++..|||+|||+..+-..+.+....+
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 5899999999999998888899999999999999987766666553211
Q ss_pred -cC------CccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 54 -VR------CLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 54 -~~------~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
.+ .+++.|-+-|..-..|+.+++++..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 01 4678999999999999999998763
No 180
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.45 E-value=4.2e-07 Score=75.41 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=40.7
Q ss_pred CCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHH
Q 013826 3 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 68 (436)
Q Consensus 3 ~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 68 (436)
++-.++.|..+++.+. ..+-+++.+|.|||||+.++..+++.+..+ .-.+++++-|....
T Consensus 2 I~p~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g--~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 2 IKPKNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEG--EYDKIIITRPPVEA 61 (205)
T ss_dssp ----SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTT--S-SEEEEEE-S--T
T ss_pred ccCCCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhC--CCcEEEEEecCCCC
Confidence 3456788988888776 367899999999999999999999888774 44478888888753
No 181
>PF13245 AAA_19: Part of AAA domain
Probab=98.35 E-value=2.9e-06 Score=58.55 Aligned_cols=53 Identities=32% Similarity=0.454 Sum_probs=39.5
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHH
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 76 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 76 (436)
++-+++.+|+|||||.++.-.+...+......+.++++++|++..++++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 34466799999999987666566555432222568999999999999887777
No 182
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.33 E-value=3.1e-06 Score=70.93 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=44.4
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHH
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 75 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~ 75 (436)
+|++.|.+++..++.. .++-.++.+|.|+|||++. ..+...+.. .+.++++++||...+.++.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~--~~~~~~l~G~aGtGKT~~l-~~~~~~~~~---~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTS--GDRVSVLQGPAGTGKTTLL-KALAEALEA---AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHC--TCSEEEEEESTTSTHHHHH-HHHHHHHHH---TT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc--CCeEEEEEECCCCCHHHHH-HHHHHHHHh---CCCeEEEECCcHHHHHHHHHh
Confidence 4788999999988652 1245778899999999863 334444444 346899999999988765544
No 183
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.28 E-value=6.6e-06 Score=76.80 Aligned_cols=118 Identities=21% Similarity=0.265 Sum_probs=66.1
Q ss_pred EECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh-hhhhCceEEEeccCcchhHH-HHHhhcc
Q 013826 29 INSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI-APAVGLSVGLAVGQSSIADE-ISELIKR 106 (436)
Q Consensus 29 ~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~~~~~~~ 106 (436)
..++||||||.+....+++....+. + ..|+.+....+++.+...+..- ....-..-.+..++.....+ .+.+
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgy-r--~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~f--- 75 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGY-R--NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNF--- 75 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhch-h--hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeeccc---
Confidence 4689999999987777777666543 2 4778887777777655544321 11110111111111111111 0000
Q ss_pred ccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCc-----ccCCcc-EEEEehhhHHhhH
Q 013826 107 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF-----TLEHLC-YLVVDETDRLLRE 167 (436)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~-----~~~~~~-~iIiDE~h~~~~~ 167 (436)
..-.....|+++|.+.|...+.+...- ++.+.. +.+-||+||+.+.
T Consensus 76 ---------------sehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~ 127 (812)
T COG3421 76 ---------------SEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTE 127 (812)
T ss_pred ---------------CccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhh
Confidence 001123489999999998888665432 244444 4577999998553
No 184
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.27 E-value=1.1e-05 Score=78.56 Aligned_cols=114 Identities=20% Similarity=0.335 Sum_probs=82.6
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhhcc----cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeE
Q 013826 287 EEKCIVFTSSVESTHRLCTLLNHFGE----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 362 (436)
Q Consensus 287 ~~~~lvf~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~v 362 (436)
.+-+++|.+.-.....++..+.+... ....+...|+-....+...+.+....|..++++.|.+.+..+-+-++..|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 46799999998888888887755421 22456667777777777777777778899999999988888777665555
Q ss_pred EEecCC------------------CChhHHHHHhhhcccCCCCceEEEEecchhHHH
Q 013826 363 VNYDKP------------------AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 401 (436)
Q Consensus 363 i~~~~~------------------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 401 (436)
+..+.. .|....+|+.||++|. ++|.|+..++..-+..
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~arF~~ 778 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRARFEA 778 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHHHHHH
Confidence 432221 2455679999999996 5899999987655443
No 185
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.27 E-value=4.6e-06 Score=78.09 Aligned_cols=66 Identities=26% Similarity=0.240 Sum_probs=50.8
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHH
Q 013826 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 76 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 76 (436)
+.+.+-|.+|...+.+ ...-.++.+|+|||||++....+...+.. +.++|+++||..-++.+.+.+
T Consensus 184 ~~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~----~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQ----KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred ccccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHc----CCeEEEEcCchHHHHHHHHHh
Confidence 3567788888776654 23558899999999999877766665554 348999999999998888754
No 186
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.25 E-value=1.2e-05 Score=67.34 Aligned_cols=119 Identities=21% Similarity=0.281 Sum_probs=74.6
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh-
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV- 83 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~- 83 (436)
.+|+.|.+...+.+.+ ..+++.+..+-+|.|||.+. .|++....+.+ .+.+.++-.++|..|.+..+...+...
T Consensus 23 liR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg---~~LvrviVpk~Ll~q~~~~L~~~lg~l~ 97 (229)
T PF12340_consen 23 LIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVI-VPMLALALADG---SRLVRVIVPKALLEQMRQMLRSRLGGLL 97 (229)
T ss_pred eeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchH-HHHHHHHHcCC---CcEEEEEcCHHHHHHHHHHHHHHHHHHh
Confidence 4799999999988875 45788999999999999874 55665555532 244444444589999998888776543
Q ss_pred CceEEEec--cCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHH
Q 013826 84 GLSVGLAV--GQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 141 (436)
Q Consensus 84 ~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~ 141 (436)
+-.+..+. ...+........ .....+....+..|+++||+.+..+
T Consensus 98 ~r~i~~lpFsR~~~~~~~~~~~-------------~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 98 NRRIYHLPFSRSTPLTPETLEK-------------IRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred CCeeEEecccCCCCCCHHHHHH-------------HHHHHHHHHHcCCEEEeChHHHHHH
Confidence 33333322 222211111100 0122233445668999999998664
No 187
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.21 E-value=7e-06 Score=71.42 Aligned_cols=133 Identities=17% Similarity=0.102 Sum_probs=84.5
Q ss_pred cccchhHHHHHhhhCCCC------CCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHH
Q 013826 5 SLFPVQVAVWQETIGPGL------FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~------~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 78 (436)
.++..|.|++-.+..... .+...++-..||.||-....-.+++.+..+ +.++|+++.+..|.....+.++.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G---r~r~vwvS~s~dL~~Da~RDl~D 113 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG---RKRAVWVSVSNDLKYDAERDLRD 113 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC---CCceEEEECChhhhhHHHHHHHH
Confidence 467778887766653322 245688899999999998777777776654 33799999999999999999988
Q ss_pred hhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCC----c-----c
Q 013826 79 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG----F-----T 149 (436)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~----~-----~ 149 (436)
+... .+.+..+..-.. .+ ...-...|+++||..|...-..... + +
T Consensus 114 IG~~-~i~v~~l~~~~~-~~------------------------~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W 167 (303)
T PF13872_consen 114 IGAD-NIPVHPLNKFKY-GD------------------------IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDW 167 (303)
T ss_pred hCCC-cccceechhhcc-Cc------------------------CCCCCCCccchhHHHHHhHHhccCCccchHHHHHHH
Confidence 7543 222222221000 00 0011237999999998776432111 1 1
Q ss_pred c-CC-ccEEEEehhhHHhh
Q 013826 150 L-EH-LCYLVVDETDRLLR 166 (436)
Q Consensus 150 ~-~~-~~~iIiDE~h~~~~ 166 (436)
+ .+ -.+||+||||....
T Consensus 168 ~g~dfdgvivfDEcH~akn 186 (303)
T PF13872_consen 168 CGEDFDGVIVFDECHKAKN 186 (303)
T ss_pred HhcCCCceEEeccchhcCC
Confidence 1 22 34899999998743
No 188
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.18 E-value=1.4e-05 Score=79.14 Aligned_cols=69 Identities=25% Similarity=0.237 Sum_probs=53.6
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
..+.+.|.+|+..++. .....+|.+|+|||||.++.-.+...+. .+.++++++||..-++++.+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~----~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVK----RGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHH----cCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 3578899999888664 3467899999999999876555554443 3348999999999999998888763
No 189
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.05 E-value=1.3e-05 Score=74.04 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=38.5
Q ss_pred cEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
-++|.+.+|||||.+++-.+.+. .. ...+.++++++++..+...+.+.+...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l-~~-~~~~~~~~~l~~n~~l~~~l~~~l~~~ 54 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL-QN-SEEGKKVLYLCGNHPLRNKLREQLAKK 54 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh-hc-cccCCceEEEEecchHHHHHHHHHhhh
Confidence 47899999999999866544443 11 125568999999999998777777654
No 190
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=98.02 E-value=3.1e-05 Score=60.89 Aligned_cols=94 Identities=15% Similarity=0.198 Sum_probs=57.5
Q ss_pred hHHHHHHHHhhhccc--ceeEEEeccccchHHHHHHHHHHhcCCe---eEEEecCC--cccccCCCC--CCeEEEecCCC
Q 013826 299 STHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKI---QVLVSSDA--MTRGMDVEG--VNNVVNYDKPA 369 (436)
Q Consensus 299 ~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~---~vlv~t~~--~~~Gidi~~--~~~vi~~~~~~ 369 (436)
..+.+++.+++.+.. ...+. ..+ .+..+...+++.|++... .||+++.- ++||+|+|+ ++.||+...|.
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~-~e~-~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVF-IEG-KDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHHhcCccccCceEE-EEC-CCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 345566666543311 12222 222 223345678888987543 68888865 999999997 67888877652
Q ss_pred C-------------------------------hhHHHHHhhhcccCCCCceEEEEe
Q 013826 370 Y-------------------------------IKTYIHRAGRTARAGQLGRCFTLL 394 (436)
Q Consensus 370 s-------------------------------~~~~~Q~~GR~~R~~~~g~~~~~~ 394 (436)
. ...+.|.+||+.|...+--+++++
T Consensus 81 p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~ 136 (142)
T smart00491 81 PNPDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLL 136 (142)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEE
Confidence 1 123469999999987652233333
No 191
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=98.01 E-value=4.1e-05 Score=60.03 Aligned_cols=64 Identities=20% Similarity=0.317 Sum_probs=47.7
Q ss_pred cchHHHHHHHHHHhcCC-eeEEEecCCcccccCCCC--CCeEEEecCCCC------------------------------
Q 013826 324 QRQSVRSKTLKAFREGK-IQVLVSSDAMTRGMDVEG--VNNVVNYDKPAY------------------------------ 370 (436)
Q Consensus 324 ~~~~~r~~~~~~f~~g~-~~vlv~t~~~~~Gidi~~--~~~vi~~~~~~s------------------------------ 370 (436)
.+..+...+++.|++.. ..||+++..++||+|+|+ +++||+...|..
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLPD 110 (141)
T ss_pred CChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHHH
Confidence 44445688899998754 379999988999999997 677888776521
Q ss_pred -hhHHHHHhhhcccCCCC
Q 013826 371 -IKTYIHRAGRTARAGQL 387 (436)
Q Consensus 371 -~~~~~Q~~GR~~R~~~~ 387 (436)
...+.|.+||+.|...+
T Consensus 111 a~~~l~Qa~GR~iR~~~D 128 (141)
T smart00492 111 AMRTLAQCVGRLIRGAND 128 (141)
T ss_pred HHHHHHHHhCccccCcCc
Confidence 12346999999997755
No 192
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.99 E-value=4.3e-05 Score=76.89 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=40.5
Q ss_pred cCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHHhhHhHhhhHHHHHh
Q 013826 126 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 178 (436)
Q Consensus 126 ~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~ 178 (436)
....|++.||..+..-+..+. +.++.+..+||||||++........+-.+++
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~r-i~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr 57 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGI-IPPELITGILVLRADRIIESSQEAFILRLYR 57 (814)
T ss_pred hcCCEEEEechhhHhHHhcCC-CCHHHccEEEEeecccccccccHHHHHHHHH
Confidence 345899999999988777644 7899999999999999876655555555554
No 193
>PRK10536 hypothetical protein; Provisional
Probab=97.97 E-value=2.7e-05 Score=66.66 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=39.5
Q ss_pred CCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHH
Q 013826 3 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67 (436)
Q Consensus 3 ~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 67 (436)
+.-.+..|...+..+. .++.+++.+|+|+|||+.+...+++.+..+ .-.++++.-|+..
T Consensus 57 i~p~n~~Q~~~l~al~----~~~lV~i~G~aGTGKT~La~a~a~~~l~~~--~~~kIiI~RP~v~ 115 (262)
T PRK10536 57 ILARNEAQAHYLKAIE----SKQLIFATGEAGCGKTWISAAKAAEALIHK--DVDRIIVTRPVLQ 115 (262)
T ss_pred ccCCCHHHHHHHHHHh----cCCeEEEECCCCCCHHHHHHHHHHHHHhcC--CeeEEEEeCCCCC
Confidence 3445566766655433 357888999999999999887777666543 2335666666654
No 194
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.86 E-value=2.6e-05 Score=76.66 Aligned_cols=103 Identities=19% Similarity=0.225 Sum_probs=86.9
Q ss_pred CcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCC-ee-EEEecCCcccccCCCCCCeEEEe
Q 013826 288 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQ-VLVSSDAMTRGMDVEGVNNVVNY 365 (436)
Q Consensus 288 ~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vlv~t~~~~~Gidi~~~~~vi~~ 365 (436)
.+++||+.-...+..+...|...+ .....+.|.|....|.+.+..|..+. .. .+++..+...|+|+..+.+|+..
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~---~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~ 616 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKG---FVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLM 616 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcc---cccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhh
Confidence 389999998888888887777444 77888889999999999999999552 33 34666788999999999999999
Q ss_pred cCCCChhHHHHHhhhcccCCCCceEEEE
Q 013826 366 DKPAYIKTYIHRAGRTARAGQLGRCFTL 393 (436)
Q Consensus 366 ~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 393 (436)
++-|++..-.|.+-|+.|.|+...+.+.
T Consensus 617 d~~wnp~~eeQaidR~hrigq~k~v~v~ 644 (674)
T KOG1001|consen 617 DPWWNPAVEEQAIDRAHRIGQTKPVKVS 644 (674)
T ss_pred chhcChHHHHHHHHHHHHhcccceeeee
Confidence 9999999999999999999988776663
No 195
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.82 E-value=8.6e-05 Score=72.79 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=47.0
Q ss_pred cchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHH-hhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
.++|.+|...+.. ++-++|.+++|+|||.+... ++..+.. .+.+..++++++||..-+..+.+.+...
T Consensus 154 ~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~-ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~ 222 (615)
T PRK10875 154 VDWQKVAAAVALT----RRISVISGGPGTGKTTTVAK-LLAALIQLADGERCRIRLAAPTGKAAARLTESLGKA 222 (615)
T ss_pred CHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHH-HHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhh
Confidence 3689888766553 67789999999999987433 3333322 2123357888999999888777766544
No 196
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.81 E-value=0.00013 Score=71.49 Aligned_cols=67 Identities=19% Similarity=0.182 Sum_probs=45.4
Q ss_pred chhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh-c-CCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 8 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-V-RCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 8 ~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~-~-~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
++|.+|+..++. ++-+++.+++|||||.+... ++..+.... . ...++++++||-.-+..+.+.+...
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~-ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVAR-LLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHH-HHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhh
Confidence 578777766654 67899999999999987433 333333211 1 1257999999988887776665543
No 197
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.75 E-value=7.8e-05 Score=68.10 Aligned_cols=71 Identities=25% Similarity=0.220 Sum_probs=53.6
Q ss_pred ccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhh
Q 013826 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 82 (436)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 82 (436)
|++.|.+++.. .+++++|.|+.|||||.+.+.-+...+...+.+..++|++++|+..+.++...+...+..
T Consensus 1 l~~eQ~~~i~~------~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS------TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 46778766554 368899999999999998766666666655455668999999999999988888876543
No 198
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.60 E-value=0.00022 Score=72.53 Aligned_cols=71 Identities=21% Similarity=0.120 Sum_probs=54.9
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
..|++-|.+|+.. ....++|.|+.|||||.+...-+...+...+.+..++|+++-|+..+.++.+.+..+.
T Consensus 3 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 5689999877643 2468999999999999986665655554434455689999999999999888887764
No 199
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.59 E-value=5.5e-06 Score=80.35 Aligned_cols=335 Identities=18% Similarity=0.116 Sum_probs=166.5
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhC
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 84 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 84 (436)
.+.+||.+.++.+...+..+.++++..++|-|||..++........... .....|+++|....+. |.+.+..+++.
T Consensus 295 ~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~-~~~P~Lv~ap~sT~~n-we~e~~~wap~-- 370 (696)
T KOG0383|consen 295 TLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIH-SPGPPLVVAPLSTIVN-WEREFELWAPS-- 370 (696)
T ss_pred cccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccC-CCCCceeeccCccccC-CCCchhccCCC--
Confidence 4679999999998888888899999999999999865443333333332 3345788888877665 56677777664
Q ss_pred ceEEEeccCcchhHHHHHhhccccccccccCCchhHH-HhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhH
Q 013826 85 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL-QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 163 (436)
Q Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~ 163 (436)
..+....|......-+....-.........-.....+ ......+.+...+|+....-..- ...-...++|+||+|.
T Consensus 371 ~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~i---l~~v~w~~livde~~r 447 (696)
T KOG0383|consen 371 FYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSI---LFSVQWGLLIVDEAHR 447 (696)
T ss_pred cccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHH---HhhhhcceeEeechhh
Confidence 4445555554332222111100000000000000111 12223356666666554221111 1122467999999998
Q ss_pred HhhHh----------------------HhhhHHHHHhhccccccccccccccccccccccc-------------cccccc
Q 013826 164 LLREA----------------------YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL-------------KTIRRC 208 (436)
Q Consensus 164 ~~~~~----------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 208 (436)
+-... .+..++.++..+...++..+..--.+..+..+.. ....+.
T Consensus 448 lkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~~~~~~~~~l~~l~~p~~lrr 527 (696)
T KOG0383|consen 448 LKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDISCEEQIKKLHLLLCPHMLRR 527 (696)
T ss_pred cccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchhhHHHHHHhhccccCchhhhh
Confidence 64321 1233455555554444444442211111110000 000000
Q ss_pred ccccccCCCCccceee--eeec--------cccccC----------------chhhhccccCCceeeecCCccccCCccc
Q 013826 209 GVERGFKDKPYPRLVK--MVLS--------ATLTQD----------------PNKLAQLDLHHPLFLTTGETRYKLPERL 262 (436)
Q Consensus 209 ~~~~~~~~~~~~~~~~--i~~s--------at~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (436)
....-+...+.....+ +.+| +....+ +.++. ..+..|+.... .........
T Consensus 528 ~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~~~~~~s~~n~~mel~-K~~~hpy~~~~--~e~~~~~~~ 604 (696)
T KOG0383|consen 528 LKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLAGVHQYSLLNIVMELR-KQCNHPYLSPL--EEPLEENGE 604 (696)
T ss_pred hhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhhcchhHHHHHHHHHHH-HhhcCcccCcc--ccccccchH
Confidence 0000000000000000 1111 111000 00111 11122222221 010000111
Q ss_pred cceeeeccCcCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhc--
Q 013826 263 ESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE-- 338 (436)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~-- 338 (436)
...........|...|...++.. .+.|+++|..-+.....+-+++...+ ....+.|.....+|++++..|..
T Consensus 605 ~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~----~~~r~dG~~~~~~rq~ai~~~n~~~ 680 (696)
T KOG0383|consen 605 YLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG----KYERIDGPITGPERQAAIDRFNAPG 680 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC----cceeccCCccchhhhhhccccCCCC
Confidence 11112223444566666666654 46799999998888888888887554 56778888888999999999984
Q ss_pred -CCeeEEEecCCcccc
Q 013826 339 -GKIQVLVSSDAMTRG 353 (436)
Q Consensus 339 -g~~~vlv~t~~~~~G 353 (436)
.+.-+|.+|+..+.|
T Consensus 681 ~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 681 SNQFCFLLSTRAGGLG 696 (696)
T ss_pred ccceEEEeecccccCC
Confidence 367789999887655
No 200
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.58 E-value=0.00044 Score=68.67 Aligned_cols=143 Identities=16% Similarity=0.162 Sum_probs=87.6
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhh
Q 013826 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 83 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 83 (436)
..|+.-|.+|+.+++. .....+|.+=+|||||.+... +.+.+.. .+.++|..+=|..-++.+.-.++..
T Consensus 668 ~~LN~dQr~A~~k~L~---aedy~LI~GMPGTGKTTtI~~-LIkiL~~---~gkkVLLtsyThsAVDNILiKL~~~---- 736 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALA---AEDYALILGMPGTGKTTTISL-LIKILVA---LGKKVLLTSYTHSAVDNILIKLKGF---- 736 (1100)
T ss_pred hhcCHHHHHHHHHHHh---ccchheeecCCCCCchhhHHH-HHHHHHH---cCCeEEEEehhhHHHHHHHHHHhcc----
Confidence 4678899999988876 567789999999999987444 3333433 4457999999988888777666654
Q ss_pred CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhH
Q 013826 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 163 (436)
Q Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~ 163 (436)
++.+.=+..+........++.-.. +.....-+..+..-..+.|+.+|=-.+.+.+ +....||+.|||||-.
T Consensus 737 ~i~~lRLG~~~kih~~v~e~~~~~----~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl-----f~~R~FD~cIiDEASQ 807 (1100)
T KOG1805|consen 737 GIYILRLGSEEKIHPDVEEFTLTN----ETSEKSYADLKKFLDQTSIVACTCLGINHPL-----FVNRQFDYCIIDEASQ 807 (1100)
T ss_pred CcceeecCCccccchHHHHHhccc----ccchhhHHHHHHHhCCCcEEEEEccCCCchh-----hhccccCEEEEccccc
Confidence 443322233333333333332100 0001112233344456788888854443322 3455799999999997
Q ss_pred Hhh
Q 013826 164 LLR 166 (436)
Q Consensus 164 ~~~ 166 (436)
+.-
T Consensus 808 I~l 810 (1100)
T KOG1805|consen 808 ILL 810 (1100)
T ss_pred ccc
Confidence 643
No 201
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.53 E-value=0.00026 Score=71.97 Aligned_cols=71 Identities=17% Similarity=0.090 Sum_probs=54.4
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
..|++-|.+|+.. ....++|.|+.|||||.+...-+...+...+.+..++|+++-|+..+.++.+.+....
T Consensus 8 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAA------PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 4588999877653 2478999999999999986655555554334455689999999999999888887764
No 202
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.51 E-value=0.00031 Score=60.80 Aligned_cols=38 Identities=24% Similarity=0.033 Sum_probs=26.3
Q ss_pred hhHHHHHhhhCCCCC--CCcEEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLF--ERDLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~--~~~~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|..+.+.+...+.. ..+.++.+|+|+|||-++...+.
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar 79 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFAR 79 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHH
Confidence 465555555544433 37899999999999987655444
No 203
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.50 E-value=0.0004 Score=70.05 Aligned_cols=63 Identities=19% Similarity=0.169 Sum_probs=44.4
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHH
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 73 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~ 73 (436)
.+.+.|.+|+..+. .++-+++.+++|+|||.+. ..+++.+...+ ....+++++||-.-+..+.
T Consensus 323 ~l~~~Q~~Ai~~~~----~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~-~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 323 GLSEEQKQALDTAI----QHKVVILTGGPGTGKTTIT-RAIIELAEELG-GLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred CCCHHHHHHHHHHH----hCCeEEEECCCCCCHHHHH-HHHHHHHHHcC-CCceEEEEeCchHHHHHHH
Confidence 57899999988875 3567999999999999864 33444443321 1146888999988776443
No 204
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.40 E-value=0.001 Score=67.42 Aligned_cols=61 Identities=13% Similarity=0.056 Sum_probs=44.1
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHH
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~ 72 (436)
.+++.|.+|+..+.. .++-++|.+++|+|||.+. -.+.+.+.. .+.++++++||-.-+..+
T Consensus 352 ~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll-~~i~~~~~~---~g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 352 RLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTML-KAAREAWEA---AGYRVIGAALSGKAAEGL 412 (744)
T ss_pred CCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHH-HHHHHHHHh---CCCeEEEEeCcHHHHHHH
Confidence 588999999988764 2456889999999999763 334444433 355799999997766544
No 205
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.37 E-value=0.00066 Score=62.99 Aligned_cols=62 Identities=26% Similarity=0.308 Sum_probs=43.6
Q ss_pred cccchhHHHHHhhhCCC--CCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHH
Q 013826 5 SLFPVQVAVWQETIGPG--LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 70 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~--~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~ 70 (436)
+|++-|.++++.+++.+ ..+..+++.++-|+|||+++ -.+.+.+.. .+..+++++||-.-+.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~---~~~~~~~~a~tg~AA~ 64 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYLRS---RGKKVLVTAPTGIAAF 64 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHhcc---ccceEEEecchHHHHH
Confidence 47788999999886655 34577899999999999863 334433333 3446888889865443
No 206
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.36 E-value=0.00047 Score=69.26 Aligned_cols=71 Identities=20% Similarity=0.098 Sum_probs=54.7
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
.|++-|.+|+.. ....++|.|++|||||.+...-+...+...+.+..++|+++-|+..+.++.+.+...+.
T Consensus 2 ~Ln~~Q~~av~~------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 478899777553 25778999999999999876666665554344556899999999999998888877653
No 207
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.32 E-value=0.0012 Score=68.23 Aligned_cols=61 Identities=10% Similarity=-0.116 Sum_probs=44.2
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHH
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~ 72 (436)
.|++.|.+|+..+.. .++-+++.++.|+|||.+ +-.+.+.+.. .+.+++.++||-.-+..+
T Consensus 346 ~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~-l~~~~~~~e~---~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 346 VLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAM-LGVAREAWEA---AGYEVRGAALSGIAAENL 406 (988)
T ss_pred CCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHH-HHHHHHHHHH---cCCeEEEecCcHHHHHHH
Confidence 589999999988764 234578999999999986 3444444433 355799999997765443
No 208
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.27 E-value=0.0029 Score=58.60 Aligned_cols=39 Identities=26% Similarity=0.241 Sum_probs=24.5
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
..+++.+|||+|||.++.-.+..........+.++.+++
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit 213 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIIT 213 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEe
Confidence 457899999999999876555443322212334555554
No 209
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.19 E-value=0.001 Score=66.51 Aligned_cols=71 Identities=20% Similarity=0.106 Sum_probs=53.0
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
.|++.|.+|+.. ...+++|.|+.|||||.+..--+...+........++++++.++..+..+.+.+...+.
T Consensus 196 ~L~~~Q~~av~~------~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 196 PLNPSQARAVVN------GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred CCCHHHHHHHhC------CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 588889777542 24678999999999999865555544544433456899999999999998888776554
No 210
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.17 E-value=0.0024 Score=55.80 Aligned_cols=68 Identities=16% Similarity=0.091 Sum_probs=41.5
Q ss_pred cccchhHHHHHhhh---CCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHH
Q 013826 5 SLFPVQVAVWQETI---GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 77 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~---~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 77 (436)
.....+..++..+. ..+.++.++++.+|+|+|||..+...+.+.+ . .+ .-++.+++.+++.++...+.
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~---~g-~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 83 FQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-K---AG-ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred CCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-H---cC-CeEEEEEHHHHHHHHHHHHh
Confidence 33444555444432 3444678999999999999997655555544 3 23 34445556677766555444
No 211
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.15 E-value=0.0014 Score=57.07 Aligned_cols=65 Identities=25% Similarity=0.362 Sum_probs=54.2
Q ss_pred HHHHHHhcCCeeEEEecCCcccccCCCC--------CCeEEEecCCCChhHHHHHhhhcccCCCC-ceEEEEec
Q 013826 331 KTLKAFREGKIQVLVSSDAMTRGMDVEG--------VNNVVNYDKPAYIKTYIHRAGRTARAGQL-GRCFTLLH 395 (436)
Q Consensus 331 ~~~~~f~~g~~~vlv~t~~~~~Gidi~~--------~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~-g~~~~~~~ 395 (436)
...++|.+|+.+|+|.+...+.|+.+.. -++.|.+.+|||....+|..||+.|.++. .+.|.++.
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~ 125 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLV 125 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEee
Confidence 4467899999999999999999998863 23567889999999999999999998875 66666543
No 212
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.14 E-value=0.0026 Score=56.70 Aligned_cols=66 Identities=18% Similarity=0.148 Sum_probs=45.2
Q ss_pred CCCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHH
Q 013826 1 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 69 (436)
Q Consensus 1 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~ 69 (436)
+|+.-..-+|.=|++.++.. .-+=+.+.++.|||||+.++.+.++.+...+. -.++++.=|+..+.
T Consensus 224 wGi~prn~eQ~~ALdlLld~--dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~-y~KiiVtRp~vpvG 289 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDD--DIDLVSLGGKAGTGKTLLALAAGLEQVLERKR-YRKIIVTRPTVPVG 289 (436)
T ss_pred hccCcccHHHHHHHHHhcCC--CCCeEEeeccCCccHhHHHHHHHHHHHHHHhh-hceEEEecCCcCcc
Confidence 46655566676666655442 11446789999999999999888888777653 33677777876654
No 213
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.10 E-value=0.0034 Score=48.86 Aligned_cols=24 Identities=42% Similarity=0.440 Sum_probs=15.4
Q ss_pred CCcEEEECCCCchHHHHhHHHHHH
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQ 47 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~ 47 (436)
++.+++.||+|+|||.++...+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHH
Confidence 467899999999999875444443
No 214
>PRK04296 thymidine kinase; Provisional
Probab=97.09 E-value=0.0011 Score=55.42 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=23.8
Q ss_pred cEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCC
Q 013826 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~ 65 (436)
-.++.+|+|+|||..++-.+..... .+.+++++.|.
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~----~g~~v~i~k~~ 39 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEE----RGMKVLVFKPA 39 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH----cCCeEEEEecc
Confidence 4678999999999765444433322 34578887663
No 215
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.09 E-value=0.0036 Score=65.14 Aligned_cols=61 Identities=16% Similarity=0.059 Sum_probs=44.4
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHH
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~ 72 (436)
.|++.|.+|+..+.. .++-+++.++.|+|||.+ +-.+.+.+.. .+.+++.++||-.-+..+
T Consensus 381 ~Ls~eQ~~Av~~i~~---~~r~~~v~G~AGTGKTt~-l~~~~~~~e~---~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 381 RLSDEQKTAIEHVAG---PARIAAVVGRAGAGKTTM-MKAAREAWEA---AGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred CCCHHHHHHHHHHhc---cCCeEEEEeCCCCCHHHH-HHHHHHHHHH---cCCeEEEEcCcHHHHHHH
Confidence 589999999887642 356688999999999985 3334444433 455799999997766544
No 216
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.08 E-value=0.0045 Score=49.07 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=23.6
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCC
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~ 65 (436)
++.+++.+|+|+|||..+...+.. +.. .+..++++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~-~~~---~~~~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANE-LFR---PGAPFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH-hhc---CCCCeEEEehh
Confidence 578999999999999754333322 211 23346655544
No 217
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=97.06 E-value=0.0016 Score=65.89 Aligned_cols=70 Identities=21% Similarity=0.123 Sum_probs=53.8
Q ss_pred ccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013826 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
|++-|.+++.. ...+++|.|+.|||||.+...-+...+...+.+..++++++.|+..+.++.+.+.+.+.
T Consensus 2 Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 67889776543 25789999999999999876666666654333456899999999999999888877654
No 218
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.95 E-value=0.0031 Score=64.44 Aligned_cols=72 Identities=24% Similarity=0.224 Sum_probs=55.0
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013826 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
..|++-|.+|+.. ....++|.|+.|||||.+...-+...+...+....++|+++-|+..+.++.+.+...+.
T Consensus 3 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT------TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC------CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 4689999877653 25789999999999999876666655554334445899999999988888888876643
No 219
>PRK06526 transposase; Provisional
Probab=96.95 E-value=0.0028 Score=55.30 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=26.1
Q ss_pred CCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEE
Q 013826 21 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 62 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil 62 (436)
+..+.++++++|+|+|||..+.....+.+.. +.++++.
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~----g~~v~f~ 132 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQA----GHRVLFA 132 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHC----CCchhhh
Confidence 3456899999999999998766555544432 3356554
No 220
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.82 E-value=0.0088 Score=54.67 Aligned_cols=63 Identities=19% Similarity=0.276 Sum_probs=40.7
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEE
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGL 89 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~ 89 (436)
++.+.+.+|||.|||.+..-.+....+..+ +..-.+|.+-|-.+.. .+.++.++.-+|+.+..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~v 265 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITTDTYRIGA--VEQLKTYADIMGVPLEV 265 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEeccchhhH--HHHHHHHHHHhCCceEE
Confidence 566889999999999987766665553332 3335677777777653 34555555555554433
No 221
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.81 E-value=0.014 Score=49.93 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=25.0
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCC
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~ 65 (436)
+.+++++|+|+|||-. +.++...+... .++.+++++...
T Consensus 35 ~~l~l~G~~G~GKTHL-L~Ai~~~~~~~-~~~~~v~y~~~~ 73 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHL-LQAIANEAQKQ-HPGKRVVYLSAE 73 (219)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHHHHHH-CTTS-EEEEEHH
T ss_pred CceEEECCCCCCHHHH-HHHHHHHHHhc-cccccceeecHH
Confidence 3588999999999985 34444444433 245577777644
No 222
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.72 E-value=0.0079 Score=55.26 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=20.7
Q ss_pred CCCcEEEECCCCchHHHHhHHHHHHHH
Q 013826 23 FERDLCINSPTGSGKTLSYALPIVQTL 49 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~~~~~~~ 49 (436)
.+..+++.+|||+|||.++...+...+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356788999999999988666555443
No 223
>PRK12377 putative replication protein; Provisional
Probab=96.70 E-value=0.01 Score=51.42 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=26.9
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHH
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 73 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~ 73 (436)
.++++.+|+|+|||..+...+.. +.. .+..++++ +..++..++.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~-l~~---~g~~v~~i-~~~~l~~~l~ 145 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNR-LLA---KGRSVIVV-TVPDVMSRLH 145 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH-HHH---cCCCeEEE-EHHHHHHHHH
Confidence 57899999999999875443333 332 23345544 4445555443
No 224
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.65 E-value=0.015 Score=48.51 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=32.5
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 27 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 27 ~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
+++.+|+|+|||..++..+...+. .+.+++|++.. .-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~----~g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA----RGEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH----CCCcEEEEECC-CCHHHHHHHHHHc
Confidence 689999999999887665665553 34478888754 3345555555544
No 225
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.62 E-value=0.021 Score=61.80 Aligned_cols=124 Identities=17% Similarity=0.172 Sum_probs=78.1
Q ss_pred ccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCc
Q 013826 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85 (436)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 85 (436)
+++.|.+++.. .+++++|.|+.|||||.+..--++..+..+ ....+++++|=|+..+.++.+.+...+... +
T Consensus 2 ~t~~Q~~ai~~------~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-~~~~~il~~tFt~~aa~e~~~ri~~~l~~~-~ 73 (1232)
T TIGR02785 2 WTDEQWQAIYT------RGQNILVSASAGSGKTAVLVERIIKKILRG-VDIDRLLVVTFTNAAAREMKERIEEALQKA-L 73 (1232)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcC-CCHhhEEEEeccHHHHHHHHHHHHHHHHHH-H
Confidence 67889777652 478999999999999998766666655543 233469999999999988888877665431 0
Q ss_pred eEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccC-CccEEEEehhhH
Q 013826 86 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLE-HLCYLVVDETDR 163 (436)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~-~~~~iIiDE~h~ 163 (436)
. +.+... ...+.+..-...-|+|.+.++..+-+.....+. +..+=|.||...
T Consensus 74 ~------~~p~~~--------------------~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 74 Q------QEPNSK--------------------HLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred h------cCchhH--------------------HHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0 011000 011112222367899999997665544322111 234556898876
No 226
>PRK08727 hypothetical protein; Validated
Probab=96.57 E-value=0.017 Score=50.01 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=22.9
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
+.+++++|+|+|||..+...+.+ +.. .+.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~-~~~---~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA-AEQ---AGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH-HHH---cCCcEEEEe
Confidence 45899999999999765443333 222 334677765
No 227
>PRK08181 transposase; Validated
Probab=96.53 E-value=0.032 Score=49.10 Aligned_cols=63 Identities=22% Similarity=0.141 Sum_probs=38.7
Q ss_pred ccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHH
Q 013826 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 73 (436)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~ 73 (436)
+.+.|..++..+-.....++++++++|+|+|||..+...+.+.+.. +.+++|+. ...|+.+..
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~----g~~v~f~~-~~~L~~~l~ 150 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN----GWRVLFTR-TTDLVQKLQ 150 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc----CCceeeee-HHHHHHHHH
Confidence 3456666665432233357889999999999998765544444432 33566654 456666543
No 228
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.0044 Score=58.54 Aligned_cols=38 Identities=16% Similarity=-0.012 Sum_probs=24.5
Q ss_pred hhHHHHHhhhCCCCCCC---cEEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFER---DLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~~---~~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|..+...+...+..++ ..++.+|.|+|||.++...+.
T Consensus 22 GQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 22 HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 56655554444333342 369999999999987655443
No 229
>PRK06921 hypothetical protein; Provisional
Probab=96.46 E-value=0.011 Score=52.03 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=24.7
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcC
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P 64 (436)
+.++++.+++|+|||..+.. +...+... .+..++++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~a-ia~~l~~~--~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTA-AANELMRK--KGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHhhh--cCceEEEEEH
Confidence 57799999999999987544 33333321 1345676654
No 230
>PRK06893 DNA replication initiation factor; Validated
Probab=96.43 E-value=0.019 Score=49.48 Aligned_cols=36 Identities=19% Similarity=0.009 Sum_probs=22.9
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcC
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P 64 (436)
..+++++|+|+|||..+...+.+...+ +.+++|+.-
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~----~~~~~y~~~ 75 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLN----QRTAIYIPL 75 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc----CCCeEEeeH
Confidence 446899999999998654444433322 335666553
No 231
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.40 E-value=0.014 Score=50.44 Aligned_cols=52 Identities=15% Similarity=0.022 Sum_probs=30.4
Q ss_pred cchhHHHHHhhhC---CCCCC-CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEE
Q 013826 7 FPVQVAVWQETIG---PGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 62 (436)
Q Consensus 7 ~~~Q~~a~~~~~~---~~~~~-~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil 62 (436)
.+.|..++..+.. .+..+ ..+++.+++|+|||..+...+. .+.. .+..++++
T Consensus 78 ~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~-~l~~---~g~~v~~i 133 (244)
T PRK07952 78 CEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICN-ELLL---RGKSVLII 133 (244)
T ss_pred CchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHH-HHHh---cCCeEEEE
Confidence 3456555554443 22222 4689999999999987544333 3333 23456666
No 232
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.38 E-value=0.012 Score=60.75 Aligned_cols=104 Identities=16% Similarity=0.069 Sum_probs=67.8
Q ss_pred hCCCCCCCcEEEECCCCchHHHHhHHHHHHHHH-----------Hhh---cCCccEEEEcCCHHHHHHHHHHHHHhhhhh
Q 013826 18 IGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-----------NRA---VRCLRALVVLPTRDLALQVKDVFAAIAPAV 83 (436)
Q Consensus 18 ~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~-----------~~~---~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 83 (436)
......++++++.-..|.|||..-+...+.... ..+ ..-+-.||++|. ++..||.+++..+...
T Consensus 368 ~~~~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~- 445 (1394)
T KOG0298|consen 368 SGDKKHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS- 445 (1394)
T ss_pred cCCccCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc-
Confidence 334445678899999999999764433222110 000 123469999998 7888999999999876
Q ss_pred CceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhc
Q 013826 84 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 144 (436)
Q Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~ 144 (436)
++.+..+.|-........ ..-..++|+++||+.|.+-+..
T Consensus 446 ~lKv~~Y~Girk~~~~~~---------------------~el~~yDIVlTtYdiLr~El~h 485 (1394)
T KOG0298|consen 446 LLKVLLYFGIRKTFWLSP---------------------FELLQYDIVLTTYDILRNELYH 485 (1394)
T ss_pred cceEEEEechhhhcccCc---------------------hhhhccCEEEeehHHHHhHhhc
Confidence 377887777654322111 0112459999999999776643
No 233
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.38 E-value=0.012 Score=49.45 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=15.4
Q ss_pred CcEEEECCCCchHHHHhHH
Q 013826 25 RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~ 43 (436)
.++|+++|+|+|||..+.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp -EEEEESSTTSSHHHHHHH
T ss_pred ceEEEECCCccchhHHHHH
Confidence 5799999999999976544
No 234
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.37 E-value=0.038 Score=47.92 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=23.6
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcC
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P 64 (436)
...+++++|+|+|||..+...+.. +.. .+.+++|+.-
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~-~~~---~~~~v~y~~~ 81 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE-LSQ---RGRAVGYVPL 81 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH-HHh---CCCeEEEEEH
Confidence 467899999999999765433332 222 2345666644
No 235
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.36 E-value=0.011 Score=57.08 Aligned_cols=75 Identities=21% Similarity=0.105 Sum_probs=53.6
Q ss_pred chhHHHHHhhhCCC-----CCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhh
Q 013826 8 PVQVAVWQETIGPG-----LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 82 (436)
Q Consensus 8 ~~Q~~a~~~~~~~~-----~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 82 (436)
|+|.-.+..++..- ..-+.+++.-|=|.|||..+...++..+...+..+..++++++++..+...+..+......
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 67877666666321 1114678888999999987665555444443446678999999999999999888877654
No 236
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.25 E-value=0.0082 Score=47.18 Aligned_cols=42 Identities=21% Similarity=0.101 Sum_probs=26.5
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHH
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 69 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~ 69 (436)
+..+++.+|+|+|||..+...+.. +.. ....++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~-~~~---~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARE-LGP---PGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhc-cCC---CCCCEEEECCEEccc
Confidence 467899999999999864433322 211 112477777775544
No 237
>PRK08116 hypothetical protein; Validated
Probab=96.24 E-value=0.03 Score=49.51 Aligned_cols=42 Identities=24% Similarity=0.236 Sum_probs=25.4
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHH
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q 71 (436)
..+++++++|+|||..+.. +...+... +..++++. ...+..+
T Consensus 115 ~gl~l~G~~GtGKThLa~a-ia~~l~~~---~~~v~~~~-~~~ll~~ 156 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAAC-IANELIEK---GVPVIFVN-FPQLLNR 156 (268)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHHc---CCeEEEEE-HHHHHHH
Confidence 3489999999999987654 44444332 23455554 3444443
No 238
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.24 E-value=0.028 Score=45.82 Aligned_cols=103 Identities=20% Similarity=0.262 Sum_probs=60.8
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCce-EEEeccCcchhHHHHHh
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS-VGLAVGQSSIADEISEL 103 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~ 103 (436)
+-.++.+|++||||.. ++.....-...+.++++..|...-.. +.. +..-.|-.
T Consensus 5 ~l~~i~gpM~SGKT~e----Ll~r~~~~~~~g~~v~vfkp~iD~R~-------------~~~~V~Sr~G~~--------- 58 (201)
T COG1435 5 WLEFIYGPMFSGKTEE----LLRRARRYKEAGMKVLVFKPAIDTRY-------------GVGKVSSRIGLS--------- 58 (201)
T ss_pred EEEEEEccCcCcchHH----HHHHHHHHHHcCCeEEEEeccccccc-------------ccceeeeccCCc---------
Confidence 4457899999999986 34444444446678999999765321 111 11111111
Q ss_pred hccccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHHhhHhHhhhHHHHHhh
Q 013826 104 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 179 (436)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 179 (436)
.+.+.|-++..+...+..... ..+.+.|.||||| +.+...-..+..+...
T Consensus 59 -----------------------~~A~~i~~~~~i~~~i~~~~~--~~~~~~v~IDEaQ-F~~~~~v~~l~~lad~ 108 (201)
T COG1435 59 -----------------------SEAVVIPSDTDIFDEIAALHE--KPPVDCVLIDEAQ-FFDEELVYVLNELADR 108 (201)
T ss_pred -----------------------ccceecCChHHHHHHHHhccc--CCCcCEEEEehhH-hCCHHHHHHHHHHHhh
Confidence 124666666666666654321 1127899999999 4455555556666654
No 239
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.21 E-value=0.024 Score=50.59 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=23.6
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
+..+++.+|||+|||.++...+....... .+.++.+++
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~--g~~~V~li~ 231 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEH--GNKKVALIT 231 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHc--CCCeEEEEE
Confidence 34677999999999987665544433321 113455554
No 240
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.20 E-value=0.027 Score=60.97 Aligned_cols=65 Identities=17% Similarity=0.151 Sum_probs=44.7
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHH-hhcCCccEEEEcCCHHHHHHH
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQV 72 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~~lil~P~~~l~~q~ 72 (436)
.|++.|.+|+..++.. .++-++|.+..|+|||.+. -.++..+.. ....+.+++.++||-.-+.++
T Consensus 835 ~Lt~~Qr~Av~~iLts--~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILET--SDRFTVVQGYAGVGKTTQF-RAVMSAVNMLPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhC--CCceEEEEeCCCCCHHHHH-HHHHHHHHHHhhccCceEEEEechHHHHHHH
Confidence 5889999999887752 2466889999999999863 222332221 112345788999998876654
No 241
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.17 E-value=0.0076 Score=57.96 Aligned_cols=38 Identities=18% Similarity=0.009 Sum_probs=25.3
Q ss_pred hhHHHHHhhhCCCCCC---CcEEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|..+...+...+..+ +..++.+|.|+|||.++.+.+.
T Consensus 25 Gq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 25 GQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5655555544433344 4688999999999987655444
No 242
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.15 E-value=0.026 Score=57.11 Aligned_cols=82 Identities=11% Similarity=0.217 Sum_probs=69.5
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhc-ccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-CcccccCCCCCCeEE
Q 013826 286 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 363 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~~~Gidi~~~~~vi 363 (436)
.+.++++.+|+.+.|.+.++.+++.. ..++.+..++|+++..+|...+....+|+.+|+|+|. .+...+.++++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 46689999999999999999988753 2358899999999999999999999999999999996 466678888888887
Q ss_pred EecC
Q 013826 364 NYDK 367 (436)
Q Consensus 364 ~~~~ 367 (436)
+-..
T Consensus 389 IDE~ 392 (681)
T PRK10917 389 IDEQ 392 (681)
T ss_pred Eech
Confidence 6543
No 243
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.0076 Score=57.54 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=24.1
Q ss_pred hhHHHHHhhhCCCCCC---CcEEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|..+.+.+...+..+ +..++.+|.|+|||.++.+.+.
T Consensus 17 GQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 17 GQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHH
Confidence 4544444443333333 4689999999999987655443
No 244
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.14 E-value=0.035 Score=50.56 Aligned_cols=42 Identities=24% Similarity=0.464 Sum_probs=31.2
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHH
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~ 46 (436)
.++|||...++.++..-.-....++.+|.|.|||..+...+.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~ 44 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAA 44 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHH
Confidence 468999999999987522124477899999999987655443
No 245
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.12 E-value=0.034 Score=61.03 Aligned_cols=65 Identities=17% Similarity=0.171 Sum_probs=45.1
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHH-hhcCCccEEEEcCCHHHHHHH
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQV 72 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~~lil~P~~~l~~q~ 72 (436)
.|++.|.+|+..++.. .++-++|.+..|+|||.+. -.+.+.+.. ....+.+++.++||-.-+.++
T Consensus 967 ~Lt~~Q~~Av~~il~s--~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILES--TDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHHH
Confidence 5789999999888752 2356889999999999863 334433332 112345788999998876654
No 246
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.07 E-value=0.095 Score=50.11 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=30.2
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHH
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 76 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 76 (436)
+.+++.|++|+|||..+ .++...+... .++.+++++.+ ..+..+....+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~-~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN-FSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh-CCCCeEEEEEH-HHHHHHHHHHH
Confidence 45889999999999754 3344444432 24557777766 35554444333
No 247
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.07 E-value=0.01 Score=51.68 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=26.3
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHHhh---cCCccEEEEcCCHHHHH
Q 013826 27 LCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLAL 70 (436)
Q Consensus 27 ~i~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~lil~P~~~l~~ 70 (436)
+++.+|||+||+-. +..+...+ .....|++++|++..+-
T Consensus 90 ~~VYGPTG~GKSqL-----lRNLis~~lI~P~PETVfFItP~~~mIp 131 (369)
T PF02456_consen 90 GVVYGPTGSGKSQL-----LRNLISCQLIQPPPETVFFITPQKDMIP 131 (369)
T ss_pred EEEECCCCCCHHHH-----HHHhhhcCcccCCCCceEEECCCCCCCC
Confidence 56899999999974 22222211 13347999999988754
No 248
>PLN03025 replication factor C subunit; Provisional
Probab=96.06 E-value=0.031 Score=51.02 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=16.9
Q ss_pred CcEEEECCCCchHHHHhHHHH
Q 013826 25 RDLCINSPTGSGKTLSYALPI 45 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~ 45 (436)
.+.+++||+|+|||..+...+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la 55 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALA 55 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 578999999999998654433
No 249
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.06 E-value=0.043 Score=45.91 Aligned_cols=57 Identities=18% Similarity=0.235 Sum_probs=31.2
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc-CCHHHHHHHHHHHHHhhhhhCceEEE
Q 013826 27 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL-PTRDLALQVKDVFAAIAPAVGLSVGL 89 (436)
Q Consensus 27 ~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~-P~~~l~~q~~~~~~~~~~~~~~~v~~ 89 (436)
+++.+|||+|||.++.-.+.....+ +.++.+++ -+-... -.+.++.+....++.+..
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~----~~~v~lis~D~~R~g--a~eQL~~~a~~l~vp~~~ 61 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK----GKKVALISADTYRIG--AVEQLKTYAEILGVPFYV 61 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT----T--EEEEEESTSSTH--HHHHHHHHHHHHTEEEEE
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc----cccceeecCCCCCcc--HHHHHHHHHHHhccccch
Confidence 5789999999999877666554433 33455554 333222 223344444444555443
No 250
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.04 Score=50.91 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=30.5
Q ss_pred ccchhHHHHHhhhCCCCCC---CcEEEECCCCchHHHHhHHHHHHHHHH
Q 013826 6 LFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIVQTLSN 51 (436)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~---~~~i~~~~tGsGKT~~~~~~~~~~~~~ 51 (436)
-|..|.+.+..++.+...+ .++++.++||+|||.+.-..+ +.+..
T Consensus 21 ~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~-~~l~~ 68 (366)
T COG1474 21 HREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVM-EELEE 68 (366)
T ss_pred ccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHH-HHHHh
Confidence 3566777666666655444 469999999999998765543 34443
No 251
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.03 E-value=0.052 Score=47.93 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=14.7
Q ss_pred CcEEEECCCCchHHHH
Q 013826 25 RDLCINSPTGSGKTLS 40 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~ 40 (436)
.+.+++++||.|||.+
T Consensus 62 p~lLivG~snnGKT~I 77 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI 77 (302)
T ss_pred CceEEecCCCCcHHHH
Confidence 7899999999999974
No 252
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.92 E-value=0.088 Score=42.47 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=25.7
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHH
Q 013826 27 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 69 (436)
Q Consensus 27 ~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~ 69 (436)
+++.+|+|+|||..+...+..... .+..++++.......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~----~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT----KGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh----cCCEEEEEECCcchH
Confidence 578999999999875444443322 345688887655543
No 253
>PRK05642 DNA replication initiation factor; Validated
Probab=95.87 E-value=0.063 Score=46.47 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=22.8
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcC
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P 64 (436)
..+++++|+|+|||..+.. +...+.. .+.+++|+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a-~~~~~~~---~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQA-ACLRFEQ---RGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHh---CCCcEEEeeH
Confidence 4678999999999986433 3322222 2346777654
No 254
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.87 E-value=0.055 Score=60.95 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=46.6
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHH
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 75 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~ 75 (436)
.|.+.|.+|+..++.. .++-.++.++.|+|||.+ +-.+.+.+.. .+.+++.++||-.-+.++.+.
T Consensus 429 ~Ls~~Q~~Av~~il~s--~~~v~ii~G~aGTGKTt~-l~~l~~~~~~---~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTS--TKRFIIINGFGGTGSTEI-AQLLLHLASE---QGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCHHHHHHHHHHHhC--CCCeEEEEECCCCCHHHH-HHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHH
Confidence 4789999998887652 235688999999999975 3334444433 456899999998876665543
No 255
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.86 E-value=0.06 Score=51.76 Aligned_cols=44 Identities=16% Similarity=0.074 Sum_probs=26.7
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHH
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q 71 (436)
+.+++.||+|+|||..+...+. .+... .++.+++++.. ..+..+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~-~~~~~-~~~~~v~yi~~-~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGN-YILEK-NPNAKVVYVTS-EKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHH-HHHHh-CCCCeEEEEEH-HHHHHH
Confidence 4589999999999986544333 33332 13446777644 344443
No 256
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=95.85 E-value=0.024 Score=48.93 Aligned_cols=86 Identities=21% Similarity=0.280 Sum_probs=56.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCc-chhHHHHHhhccccccccccCCchhHHHhhccCCcEEEeC
Q 013826 56 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQS-SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 134 (436)
Q Consensus 56 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T 134 (436)
.+.+|||+.+---+..+.+.++.+-.. +..+.-+.+.. ...++.. ++ -.....|.|||
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~-~L-------------------~~~~~~i~vGT 184 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVK-LL-------------------KKTRVHIAVGT 184 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHH-HH-------------------HhCCceEEEeC
Confidence 467888888766666777777766311 23333344443 2222222 11 12346899999
Q ss_pred chhHHHHhhcCCCcccCCccEEEEehhhH
Q 013826 135 PGRLMDHINATRGFTLEHLCYLVVDETDR 163 (436)
Q Consensus 135 ~~~l~~~l~~~~~~~~~~~~~iIiDE~h~ 163 (436)
|+++..+++... +.++++.+||+|--|.
T Consensus 185 P~Rl~kLle~~~-L~l~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 185 PGRLSKLLENGA-LSLSNLKRIVLDWSYL 212 (252)
T ss_pred hHHHHHHHHcCC-CCcccCeEEEEcCCcc
Confidence 999999997754 7899999999998773
No 257
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.85 E-value=0.024 Score=50.04 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=16.6
Q ss_pred CcEEEECCCCchHHHHhHHH
Q 013826 25 RDLCINSPTGSGKTLSYALP 44 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~ 44 (436)
.++++.+|+|+|||.++-..
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 57899999999999876443
No 258
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.81 E-value=0.087 Score=51.59 Aligned_cols=45 Identities=20% Similarity=0.126 Sum_probs=26.4
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHH
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~ 72 (436)
+.++|++++|+|||..+.. +...+... .++.+++|+.. ..++.++
T Consensus 315 NpL~LyG~sGsGKTHLL~A-Ia~~a~~~-~~g~~V~Yita-eef~~el 359 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHA-IGHYARRL-YPGTRVRYVSS-EEFTNEF 359 (617)
T ss_pred CcEEEECCCCCCHHHHHHH-HHHHHHHh-CCCCeEEEeeH-HHHHHHH
Confidence 3488999999999986433 33333221 13446766654 3444443
No 259
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.81 E-value=0.055 Score=51.62 Aligned_cols=61 Identities=16% Similarity=0.056 Sum_probs=37.4
Q ss_pred HHhhhC-CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 14 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 14 ~~~~~~-~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
++.++. .+..+.-+++.+++|+|||..++..+..... .+.+++|++-.. -..|+......+
T Consensus 69 LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~----~g~~vlYvs~Ee-s~~qi~~ra~rl 130 (446)
T PRK11823 69 LDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAA----AGGKVLYVSGEE-SASQIKLRAERL 130 (446)
T ss_pred HHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHh----cCCeEEEEEccc-cHHHHHHHHHHc
Confidence 344443 3444567889999999999876555444332 345788988543 344555444443
No 260
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.79 E-value=0.04 Score=52.78 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=16.2
Q ss_pred cEEEECCCCchHHHHhHHHHH
Q 013826 26 DLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~~~~ 46 (436)
..++++|+|+|||.++...+.
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999987655433
No 261
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.77 E-value=0.045 Score=49.80 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=16.2
Q ss_pred CcEEEECCCCchHHHHhHH
Q 013826 25 RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~ 43 (436)
.++|+++|+|+|||..+-+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 5899999999999986544
No 262
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.77 E-value=0.025 Score=46.56 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=28.6
Q ss_pred CCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHH
Q 013826 19 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (436)
Q Consensus 19 ~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q 71 (436)
..+..++++++.+|+|+|||..+...+.+.+.. +..++|+. ..+|..+
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~----g~~v~f~~-~~~L~~~ 89 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLAVAIANEAIRK----GYSVLFIT-ASDLLDE 89 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHHHHHHHHHHHT----T--EEEEE-HHHHHHH
T ss_pred CCcccCeEEEEEhhHhHHHHHHHHHHHHHhccC----CcceeEee-cCceecc
Confidence 334456889999999999999876655555543 33566654 4455544
No 263
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.76 E-value=0.011 Score=55.07 Aligned_cols=37 Identities=16% Similarity=0.040 Sum_probs=23.7
Q ss_pred hhHHHHHhhhCCCCCC--Cc-EEEECCCCchHHHHhHHHH
Q 013826 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYALPI 45 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~i~~~~tGsGKT~~~~~~~ 45 (436)
+|.++.+.+...+..+ .+ .++.||.|+|||..+...+
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la 59 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLA 59 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHH
Confidence 5655555544443333 34 5899999999998755433
No 264
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.74 E-value=0.1 Score=48.38 Aligned_cols=40 Identities=23% Similarity=0.118 Sum_probs=25.6
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCC
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~ 65 (436)
.+.++++||+|+|||-............ .++.++++++..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~--~~~a~v~y~~se 152 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALAN--GPNARVVYLTSE 152 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhh--CCCceEEeccHH
Confidence 4668999999999998643333332222 255567776654
No 265
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.73 E-value=0.021 Score=55.18 Aligned_cols=38 Identities=21% Similarity=0.123 Sum_probs=22.9
Q ss_pred hhHHHHHhhhCCCCCC--Cc-EEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|.++...+...+..+ .+ .++.+|+|+|||.++...+.
T Consensus 18 Gq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~ 58 (504)
T PRK14963 18 GQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAM 58 (504)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4555544443333233 24 49999999999987654433
No 266
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.73 E-value=0.14 Score=50.30 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=54.0
Q ss_pred CCCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013826 2 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 2 ~~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
+-+-+.|.=.+-++++++.+. .+-.++.+|=|.|||.+..+.+...+.. .+.++++.+|...-+.++++.+...+.
T Consensus 166 np~~~~~~~~~~id~~~~~fk-q~~tV~taPRqrGKS~iVgi~l~~La~f---~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 166 NPEAPSPRTLREIDRIFDEYG-KCYTAATVPRRCGKTTIMAIILAAMISF---LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CcCCCChhhHHHHHHHHHHHh-hcceEEEeccCCCcHHHHHHHHHHHHHh---cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 334455665666666666553 4556778899999998765544433321 345899999999999999988887776
Q ss_pred hh
Q 013826 82 AV 83 (436)
Q Consensus 82 ~~ 83 (436)
..
T Consensus 242 ~l 243 (752)
T PHA03333 242 AY 243 (752)
T ss_pred Hh
Confidence 43
No 267
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.71 E-value=0.047 Score=54.81 Aligned_cols=82 Identities=12% Similarity=0.216 Sum_probs=69.1
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhc-ccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-CcccccCCCCCCeEE
Q 013826 286 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 363 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~~~Gidi~~~~~vi 363 (436)
.+.++++.+|+...|.++++.+++.. ..++.+..++|+++..+|...++...+|+.+|+|+|. .+...+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 46689999999999999999888753 2358899999999999999999999999999999996 455668888888877
Q ss_pred EecC
Q 013826 364 NYDK 367 (436)
Q Consensus 364 ~~~~ 367 (436)
+-..
T Consensus 363 IDEa 366 (630)
T TIGR00643 363 IDEQ 366 (630)
T ss_pred Eech
Confidence 6543
No 268
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.67 E-value=0.011 Score=57.98 Aligned_cols=38 Identities=16% Similarity=-0.041 Sum_probs=23.3
Q ss_pred hhHHHHHhhhCCCCCC---CcEEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|..+...+...+..+ ...|+.||.|+|||.++...+.
T Consensus 19 GQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK 59 (702)
T PRK14960 19 GQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAK 59 (702)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3544444433333333 3458999999999987655443
No 269
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.65 E-value=0.12 Score=45.14 Aligned_cols=49 Identities=12% Similarity=-0.094 Sum_probs=34.3
Q ss_pred HhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCH
Q 013826 15 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 66 (436)
Q Consensus 15 ~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~ 66 (436)
+.++..+..++-++|.|++|+|||..++-.+...... .+.+++|++...
T Consensus 4 D~~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~---~g~~vly~s~E~ 52 (242)
T cd00984 4 DNLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKK---QGKPVLFFSLEM 52 (242)
T ss_pred hhhhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh---CCCceEEEeCCC
Confidence 3445556667788999999999998766656655543 245789998443
No 270
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.65 E-value=0.13 Score=48.80 Aligned_cols=38 Identities=21% Similarity=0.154 Sum_probs=24.5
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcC
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P 64 (436)
+.+++.||+|+|||..+.. +...+... .++.+++++..
T Consensus 137 n~l~l~G~~G~GKThL~~a-i~~~l~~~-~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHA-IGNEILEN-NPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHHHHH-HHHHHHHh-CCCCcEEEEEH
Confidence 4578999999999986533 33333332 13456777753
No 271
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.62 E-value=0.022 Score=56.65 Aligned_cols=38 Identities=16% Similarity=-0.073 Sum_probs=24.1
Q ss_pred hhHHHHHhhhCCCCCC--Cc-EEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|.++.+.+...+..+ .+ .|+.+|.|+|||.++...+.
T Consensus 20 GQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAK 60 (830)
T PRK07003 20 GQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAK 60 (830)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4655555544444343 23 58999999999987654333
No 272
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.58 E-value=0.015 Score=56.28 Aligned_cols=38 Identities=16% Similarity=0.020 Sum_probs=24.2
Q ss_pred hhHHHHHhhhCCCCCC--Cc-EEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|..+.+.+...+..+ .+ .++.+|.|+|||.++...+.
T Consensus 20 Gq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk 60 (509)
T PRK14958 20 GQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAK 60 (509)
T ss_pred CCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHH
Confidence 4555555544444333 34 58999999999987654333
No 273
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.57 E-value=0.026 Score=55.79 Aligned_cols=38 Identities=18% Similarity=0.035 Sum_probs=24.3
Q ss_pred hhHHHHHhhhCCCCCC--Cc-EEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|..+...+...+..+ .+ .|+.+|.|+|||.++...+.
T Consensus 20 GQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk 60 (647)
T PRK07994 20 GQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAK 60 (647)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4655555444444344 23 58999999999987655443
No 274
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.56 E-value=0.019 Score=56.58 Aligned_cols=39 Identities=15% Similarity=0.044 Sum_probs=25.4
Q ss_pred hhHHHHHhhhCCCCCC---CcEEEECCCCchHHHHhHHHHHH
Q 013826 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIVQ 47 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~i~~~~tGsGKT~~~~~~~~~ 47 (436)
+|..+...+...+..+ +..|+.+|.|+|||.++...+..
T Consensus 28 Gq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~ 69 (598)
T PRK09111 28 GQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARA 69 (598)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 4555545444444344 35899999999999876655443
No 275
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.54 E-value=0.043 Score=49.58 Aligned_cols=44 Identities=23% Similarity=0.178 Sum_probs=33.8
Q ss_pred CCcccchhHHHHHhhhCCCCCC--C-cEEEECCCCchHHHHhHHHHH
Q 013826 3 ISSLFPVQVAVWQETIGPGLFE--R-DLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 3 ~~~~~~~Q~~a~~~~~~~~~~~--~-~~i~~~~tGsGKT~~~~~~~~ 46 (436)
+..++|+|..+++.+...+.++ . ..++.+|.|+||+..+...+.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~ 48 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAE 48 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHH
Confidence 3578999999999988766554 3 478999999999987654333
No 276
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.54 E-value=0.034 Score=51.95 Aligned_cols=42 Identities=24% Similarity=0.304 Sum_probs=25.3
Q ss_pred cchhHHHHHhhhCCCC---CCCcEEEECCCCchHHHHhHHHHHHHH
Q 013826 7 FPVQVAVWQETIGPGL---FERDLCINSPTGSGKTLSYALPIVQTL 49 (436)
Q Consensus 7 ~~~Q~~a~~~~~~~~~---~~~~~i~~~~tGsGKT~~~~~~~~~~~ 49 (436)
|..|.+.+...+.... ...++++.+|+|+|||.++-. +.+.+
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~-~~~~l 64 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKY-VMKEL 64 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHH-HHHHH
Confidence 3445545444444322 236799999999999986433 33333
No 277
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.53 E-value=0.079 Score=50.14 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=24.0
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHH-HHhhcCCccEEEEc
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTL-SNRAVRCLRALVVL 63 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~-~~~~~~~~~~lil~ 63 (436)
++.+++.+|||+|||.++...+.... .. .+.++.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~---~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY---GKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc---CCCeEEEEE
Confidence 45678999999999987665544433 22 233566554
No 278
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.52 E-value=0.11 Score=51.96 Aligned_cols=78 Identities=13% Similarity=0.087 Sum_probs=51.0
Q ss_pred cchhHHHHHhhhCCCCCCC-cEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCc
Q 013826 7 FPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 85 (436)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~~-~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 85 (436)
++-|.++++....-+..++ -+++.|.=|-|||.++-+++....... ...++++.+|+.+-++..++.+.+-+...|.
T Consensus 213 T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~--~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~ 290 (758)
T COG1444 213 TEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA--GSVRIIVTAPTPANVQTLFEFAGKGLEFLGY 290 (758)
T ss_pred ChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc--CCceEEEeCCCHHHHHHHHHHHHHhHHHhCC
Confidence 3445555443333222333 577899999999987665553222221 1457999999999999988888877766654
Q ss_pred e
Q 013826 86 S 86 (436)
Q Consensus 86 ~ 86 (436)
.
T Consensus 291 ~ 291 (758)
T COG1444 291 K 291 (758)
T ss_pred c
Confidence 4
No 279
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.50 E-value=0.059 Score=46.69 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=16.1
Q ss_pred CcEEEECCCCchHHHHhHH
Q 013826 25 RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~ 43 (436)
.++++.+|+|.|||..+.+
T Consensus 53 DHvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred CeEEeeCCCCCcHHHHHHH
Confidence 6899999999999976544
No 280
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.48 E-value=0.11 Score=45.12 Aligned_cols=63 Identities=13% Similarity=0.169 Sum_probs=40.2
Q ss_pred HHHHhhhC-CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 12 AVWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 12 ~a~~~~~~-~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
..++.++. .+-.+.-+++.+++|+|||..+...+...+. .+.+++|++-... ..++.+.+..+
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~----~g~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK----QGKKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh----CCCEEEEEEcCCC-HHHHHHHHHHC
Confidence 34455554 3445677889999999999876665555443 3447888875543 34555555554
No 281
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.46 E-value=0.15 Score=48.72 Aligned_cols=38 Identities=24% Similarity=0.201 Sum_probs=25.0
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcC
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P 64 (436)
+.++++||+|+|||..+.. +...+... .++.+++|+..
T Consensus 131 n~l~lyG~~G~GKTHLl~a-i~~~l~~~-~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQS-IGNYVVQN-EPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHH-HHHHHHHh-CCCCeEEEEEH
Confidence 4689999999999986543 33333332 13456787764
No 282
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.43 E-value=0.12 Score=51.78 Aligned_cols=94 Identities=17% Similarity=0.094 Sum_probs=73.2
Q ss_pred cCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCC
Q 013826 272 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 349 (436)
Q Consensus 272 ~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~ 349 (436)
..|.+....++... .++.+||.+|.+..+.++.+.|++..+ +..+..+|++++..+|.+.+.+..+|+.+|+|+|..
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~-~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLG-AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 45666666655443 467899999999999999999987642 245888999999999999999999999999999975
Q ss_pred cccccCCCCCCeEEEecC
Q 013826 350 MTRGMDVEGVNNVVNYDK 367 (436)
Q Consensus 350 ~~~Gidi~~~~~vi~~~~ 367 (436)
. .=.-++++..||+.+-
T Consensus 250 A-vFaP~~~LgLIIvdEE 266 (665)
T PRK14873 250 A-VFAPVEDLGLVAIWDD 266 (665)
T ss_pred e-EEeccCCCCEEEEEcC
Confidence 2 2235556777776543
No 283
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.43 E-value=0.017 Score=56.51 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=17.1
Q ss_pred CcEEEECCCCchHHHHhHHHHH
Q 013826 25 RDLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~ 46 (436)
...|+.+|.|+|||.++.+.+.
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk 60 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAK 60 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4577899999999987655444
No 284
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.42 E-value=0.035 Score=52.28 Aligned_cols=38 Identities=13% Similarity=0.018 Sum_probs=24.1
Q ss_pred hhHHHHHhhhCCCCCC--C-cEEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFE--R-DLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~-~~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|..+...+...+.++ . ..|+++|.|+|||.++...+.
T Consensus 20 Gq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 20 AQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred ChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHH
Confidence 4555544444333333 3 378999999999987655443
No 285
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.40 E-value=0.1 Score=52.90 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=24.6
Q ss_pred cchhHHHHHhhhCCCCCC---CcE-EEECCCCchHHHHhHHH
Q 013826 7 FPVQVAVWQETIGPGLFE---RDL-CINSPTGSGKTLSYALP 44 (436)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~---~~~-i~~~~tGsGKT~~~~~~ 44 (436)
|.-|.+.+..++.....+ .++ +|.|+||+|||.+.-.+
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~V 801 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSV 801 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHH
Confidence 455666665555543322 244 59999999999875543
No 286
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.39 E-value=0.13 Score=44.37 Aligned_cols=54 Identities=9% Similarity=-0.036 Sum_probs=34.7
Q ss_pred CCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 21 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
+..+..+++.+++|+|||..+...+...+. ++.++++++... -..+..+.+..+
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~----~g~~~~yi~~e~-~~~~~~~~~~~~ 74 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQ----NGYSVSYVSTQL-TTTEFIKQMMSL 74 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHh----CCCcEEEEeCCC-CHHHHHHHHHHh
Confidence 345677899999999999876554554332 345788888443 334555555443
No 287
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.37 E-value=0.022 Score=55.88 Aligned_cols=38 Identities=21% Similarity=0.062 Sum_probs=25.3
Q ss_pred hhHHHHHhhhCCCCCC--Cc-EEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|.++.+.+...+..+ .+ .|+.+|.|+|||.++...+.
T Consensus 17 Gq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk 57 (584)
T PRK14952 17 GQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILAR 57 (584)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5666655555444444 34 58999999999987655443
No 288
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.36 E-value=0.09 Score=47.98 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=16.2
Q ss_pred CccEEEEehhhHHhhHhHhhhHHHHH
Q 013826 152 HLCYLVVDETDRLLREAYQAWLPTVL 177 (436)
Q Consensus 152 ~~~~iIiDE~h~~~~~~~~~~~~~i~ 177 (436)
..+++|+||+|.+........+..++
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~l 125 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFM 125 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHH
Confidence 46799999999873333333343333
No 289
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.34 E-value=0.12 Score=46.08 Aligned_cols=54 Identities=11% Similarity=0.031 Sum_probs=33.8
Q ss_pred CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHH
Q 013826 20 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 77 (436)
Q Consensus 20 ~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 77 (436)
.+..+.-+++.+++|+|||..+...+...... .+.+++|++-... ..++.+.+.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~---~g~~vl~iS~E~~-~~~~~~r~~ 79 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQ---HGVRVGTISLEEP-VVRTARRLL 79 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh---cCceEEEEEcccC-HHHHHHHHH
Confidence 34456778999999999998766555544333 2447888874332 334444443
No 290
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.34 E-value=0.018 Score=56.20 Aligned_cols=38 Identities=18% Similarity=0.094 Sum_probs=24.1
Q ss_pred hhHHHHHhhhCCCCCC---CcEEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|..+.+.+...+..+ +..++.||.|+|||..+...+.
T Consensus 20 GQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 20 GQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4555555444443333 3478999999999987655443
No 291
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.32 E-value=0.029 Score=56.90 Aligned_cols=37 Identities=19% Similarity=0.039 Sum_probs=23.1
Q ss_pred hhHHHHHhhhCCCCCC--CcE-EEECCCCchHHHHhHHHH
Q 013826 9 VQVAVWQETIGPGLFE--RDL-CINSPTGSGKTLSYALPI 45 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~~-i~~~~tGsGKT~~~~~~~ 45 (436)
+|..+...+...+..+ .+. |+.||.|+|||.++.+.+
T Consensus 20 GQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLA 59 (944)
T PRK14949 20 GQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFA 59 (944)
T ss_pred CcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4555544443333333 454 899999999998765533
No 292
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=95.30 E-value=0.0081 Score=49.40 Aligned_cols=51 Identities=22% Similarity=0.200 Sum_probs=33.2
Q ss_pred chhHHHhhccCCcEEEeCchhHHHHhhcCCCc-ccCCccEEEEehhhHHhhH
Q 013826 117 PEDVLQELQSAVDILVATPGRLMDHINATRGF-TLEHLCYLVVDETDRLLRE 167 (436)
Q Consensus 117 ~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~~~-~~~~~~~iIiDE~h~~~~~ 167 (436)
|....+......+|+|+++..|++...+.... ...+-.+|||||||.+.+.
T Consensus 109 PY~~~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 109 PYYLARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHHHHHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred hhHHHHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 34455666677899999999987754432211 1234569999999988543
No 293
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.27 E-value=0.093 Score=48.64 Aligned_cols=52 Identities=17% Similarity=0.053 Sum_probs=32.1
Q ss_pred CCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHH
Q 013826 22 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 22 ~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 78 (436)
..+.-+++.+++|+|||..++..+..... .+.+++|++-... ..|+......
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~----~g~~VlYvs~EEs-~~qi~~Ra~r 131 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAK----RGGKVLYVSGEES-PEQIKLRADR 131 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHh----cCCeEEEEECCcC-HHHHHHHHHH
Confidence 34566889999999999876554443322 2347888875433 3454443333
No 294
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.27 E-value=0.12 Score=45.61 Aligned_cols=52 Identities=15% Similarity=-0.012 Sum_probs=35.8
Q ss_pred HHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHH
Q 013826 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67 (436)
Q Consensus 13 a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 67 (436)
.++.++..+..++=+++.|+||.|||..++-.+.+..... +..++|++.-..
T Consensus 8 ~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~---~~~vly~SlEm~ 59 (259)
T PF03796_consen 8 ALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNG---GYPVLYFSLEMS 59 (259)
T ss_dssp HHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTT---SSEEEEEESSS-
T ss_pred HHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhc---CCeEEEEcCCCC
Confidence 3456666566667789999999999998777677666542 347899886543
No 295
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.26 E-value=0.061 Score=51.50 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=37.4
Q ss_pred CCCcEEEECCCCchHHHHhHHHHHHHHHH--hhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 23 FERDLCINSPTGSGKTLSYALPIVQTLSN--RAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~~~~~~~~~--~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
+++-+++++..|||||.+++--+...++. +......+|++.|++....-+.+.+-.+
T Consensus 225 k~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeL 283 (747)
T COG3973 225 KNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPEL 283 (747)
T ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhh
Confidence 45678899999999999876444333332 1223345999999998766444444433
No 296
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.22 E-value=0.17 Score=43.49 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=17.9
Q ss_pred CCCcEEEECCCCchHHHHhHHHH
Q 013826 23 FERDLCINSPTGSGKTLSYALPI 45 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~~~ 45 (436)
.+..+++.+|+|+|||..+...+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~ 59 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAAC 59 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34679999999999998754433
No 297
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.22 E-value=0.021 Score=56.42 Aligned_cols=38 Identities=16% Similarity=-0.034 Sum_probs=24.3
Q ss_pred hhHHHHHhhhCCCCCC---CcEEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|.++...+...+..+ ...|+.+|.|+|||.++...+.
T Consensus 20 GQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 20 GQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4555555444433333 3469999999999987655433
No 298
>PRK14974 cell division protein FtsY; Provisional
Probab=95.20 E-value=0.21 Score=45.48 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=22.6
Q ss_pred cEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcC
Q 013826 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P 64 (436)
-+++.+++|+|||.++...+. .+.. .+.+++++..
T Consensus 142 vi~~~G~~GvGKTTtiakLA~-~l~~---~g~~V~li~~ 176 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAY-YLKK---NGFSVVIAAG 176 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HHHH---cCCeEEEecC
Confidence 467899999999987555443 3332 3345666653
No 299
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.20 E-value=0.038 Score=54.59 Aligned_cols=37 Identities=16% Similarity=0.009 Sum_probs=23.5
Q ss_pred hhHHHHHhhhCCCCCC--Cc-EEEECCCCchHHHHhHHHH
Q 013826 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYALPI 45 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~i~~~~tGsGKT~~~~~~~ 45 (436)
+|.++...+...+..+ .+ .|+.+|.|+|||.++...+
T Consensus 20 Gq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~la 59 (576)
T PRK14965 20 GQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILA 59 (576)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4555544444444344 34 5899999999998765533
No 300
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.19 E-value=0.11 Score=47.88 Aligned_cols=35 Identities=23% Similarity=0.212 Sum_probs=23.5
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
..+.+.+|||+|||.++...+.... . .+.++.++.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~-~---~GkkVglI~ 276 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH-G---KKKTVGFIT 276 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH-H---cCCcEEEEe
Confidence 4678999999999988666555432 2 334565554
No 301
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.043 Score=49.60 Aligned_cols=39 Identities=21% Similarity=0.417 Sum_probs=24.2
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHH
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q 71 (436)
+.+++.+|+|+|||..+=. +.. ......|-+.+..|+..
T Consensus 246 kgvLm~GPPGTGKTlLAKA-----vAT---Ec~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKA-----VAT---ECGTTFFNVSSSTLTSK 284 (491)
T ss_pred ceeeeeCCCCCcHHHHHHH-----HHH---hhcCeEEEechhhhhhh
Confidence 6789999999999975311 111 22246666666555543
No 302
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.19 E-value=0.041 Score=53.47 Aligned_cols=38 Identities=16% Similarity=0.010 Sum_probs=24.2
Q ss_pred hhHHHHHhhhCCCCCC--Cc-EEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|..+...+...+..+ .+ .|+.||.|+|||.++...+.
T Consensus 20 Gq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 20 GQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5555555444444333 23 67999999999987655443
No 303
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.18 E-value=0.072 Score=54.15 Aligned_cols=72 Identities=14% Similarity=0.338 Sum_probs=58.9
Q ss_pred HHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhhcc----cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCC
Q 013826 277 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 349 (436)
Q Consensus 277 ~l~~~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~ 349 (436)
.+..+.-...++++++.+||...+.+.++.|+.+.. ....+. +|+.++..++...+++|.+|+.+|||+|..
T Consensus 115 ~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 115 LLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 344555555678999999999999999999887641 233444 999999999999999999999999999975
No 304
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.10 E-value=0.092 Score=59.23 Aligned_cols=64 Identities=20% Similarity=0.254 Sum_probs=43.5
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhH---HHHHHHHHHhhcCCccEEEEcCCHHHHHHH
Q 013826 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA---LPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~---~~~~~~~~~~~~~~~~~lil~P~~~l~~q~ 72 (436)
..+++.|.+|+..++.. .+.-+++.++.|+|||.+.. -++.+.+. ..+.+++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~--~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~---~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIIST--KDRFVAVQGLAGVGKTTMLESRYKPVLQAFE---SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH---hcCCeEEEEeChHHHHHHH
Confidence 35899999999887641 23457889999999998641 11222222 2455799999998766554
No 305
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.09 E-value=0.086 Score=50.04 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=15.7
Q ss_pred CcEEEECCCCchHHHHhHH
Q 013826 25 RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~ 43 (436)
.++++.+|+|+|||..+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI 55 (413)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4789999999999986543
No 306
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.09 E-value=0.035 Score=50.44 Aligned_cols=44 Identities=20% Similarity=0.213 Sum_probs=28.1
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHH
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 72 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~ 72 (436)
++++++.+|||+|||..+...+.+.+ . .+..+++++ ...+..+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~-~---~g~~V~y~t-~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL-D---RGKSVIYRT-ADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-H---CCCeEEEEE-HHHHHHHH
Confidence 47899999999999987654444333 2 333566654 34554443
No 307
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.1 Score=45.51 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=32.5
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHH
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 78 (436)
+.+++.+|+|+||++.+-.++-+ .+ ...|-+.+..|+..|.-+-.+
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATE-------An-STFFSvSSSDLvSKWmGESEk 212 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATE-------AN-STFFSVSSSDLVSKWMGESEK 212 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhh-------cC-CceEEeehHHHHHHHhccHHH
Confidence 35789999999999864333221 23 688889999998877654443
No 308
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.08 E-value=0.03 Score=51.65 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=20.3
Q ss_pred hhCCCCCCCcEEEECCCCchHHHHhH
Q 013826 17 TIGPGLFERDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 17 ~~~~~~~~~~~i~~~~tGsGKT~~~~ 42 (436)
+..++..|+.+++.+|+|+|||..+.
T Consensus 161 ~~~pig~Gq~~~IvG~~g~GKTtL~~ 186 (415)
T TIGR00767 161 LFAPIGKGQRGLIVAPPKAGKTVLLQ 186 (415)
T ss_pred eEEEeCCCCEEEEECCCCCChhHHHH
Confidence 33455678999999999999997543
No 309
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.07 E-value=0.081 Score=50.03 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=22.5
Q ss_pred chhHHHHHhhhCCCC---CCCcEEEECCCCchHHHHhHH
Q 013826 8 PVQVAVWQETIGPGL---FERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 8 ~~Q~~a~~~~~~~~~---~~~~~i~~~~tGsGKT~~~~~ 43 (436)
.-|.+.+...+.... ...++++.||+|+|||.+.-.
T Consensus 36 e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~ 74 (394)
T PRK00411 36 EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKK 74 (394)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHH
Confidence 334444444443222 236799999999999986433
No 310
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.018 Score=50.57 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=17.5
Q ss_pred CCCcEEEECCCCchHHHHhHH
Q 013826 23 FERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~ 43 (436)
.+.|+++.+|||||||+.+..
T Consensus 96 ~KSNILLiGPTGsGKTlLAqT 116 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQT 116 (408)
T ss_pred eeccEEEECCCCCcHHHHHHH
Confidence 457899999999999986543
No 311
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.02 E-value=0.032 Score=54.65 Aligned_cols=38 Identities=16% Similarity=-0.004 Sum_probs=24.4
Q ss_pred hhHHHHHhhhCCCCCC--Cc-EEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|.++.+.+...+..+ .+ .|+.+|.|+|||.++...+.
T Consensus 20 GQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAk 60 (700)
T PRK12323 20 GQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 (700)
T ss_pred CcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4555555444444344 24 58999999999987655443
No 312
>PRK04195 replication factor C large subunit; Provisional
Probab=95.00 E-value=0.12 Score=50.22 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=16.3
Q ss_pred CCcEEEECCCCchHHHHhHH
Q 013826 24 ERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~ 43 (436)
.+.+++.||+|+|||..+..
T Consensus 39 ~~~lLL~GppG~GKTtla~a 58 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHA 58 (482)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46799999999999986533
No 313
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=94.99 E-value=0.29 Score=46.82 Aligned_cols=78 Identities=17% Similarity=0.050 Sum_probs=55.3
Q ss_pred cccchhHHHHHhhhCCCCCC------CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHH
Q 013826 5 SLFPVQVAVWQETIGPGLFE------RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~------~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 78 (436)
.+-|||.-++..++.....+ +.++|..|=+-|||..+...+...+.-....+..+.+++|+.+.+.+.+..++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 57899988887777433222 357899999999998766333333333334677899999999988888877776
Q ss_pred hhhh
Q 013826 79 IAPA 82 (436)
Q Consensus 79 ~~~~ 82 (436)
....
T Consensus 141 mv~~ 144 (546)
T COG4626 141 MVKR 144 (546)
T ss_pred HHHh
Confidence 6543
No 314
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.99 E-value=0.22 Score=44.25 Aligned_cols=36 Identities=14% Similarity=-0.117 Sum_probs=22.7
Q ss_pred cchhHHHHHhhhCCCCCCC-cEEEECCCCchHHHHhH
Q 013826 7 FPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYA 42 (436)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~~-~~i~~~~tGsGKT~~~~ 42 (436)
.+.+.+++..+...+..+. .+++.+|+|+|||.++.
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3444555554433333333 57899999999998643
No 315
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.98 E-value=0.11 Score=42.04 Aligned_cols=40 Identities=20% Similarity=0.057 Sum_probs=24.2
Q ss_pred hHHHHHhhhCCCCCC---CcEEEECCCCchHHHHhHHHHHHHH
Q 013826 10 QVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIVQTL 49 (436)
Q Consensus 10 Q~~a~~~~~~~~~~~---~~~i~~~~tGsGKT~~~~~~~~~~~ 49 (436)
|.++++.+...+.++ ...|+.+|.|+||+..+...+...+
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll 44 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALL 44 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHc
Confidence 445544444333333 3469999999999987655444433
No 316
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.95 E-value=0.049 Score=54.05 Aligned_cols=37 Identities=22% Similarity=0.083 Sum_probs=23.8
Q ss_pred hhHHHHHhhhCCCCCC---CcEEEECCCCchHHHHhHHHH
Q 013826 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPI 45 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~i~~~~tGsGKT~~~~~~~ 45 (436)
+|.++...+...+..+ ...|+.+|.|+|||.++...+
T Consensus 20 Gq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 20 GQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHH
Confidence 4655555544433333 335899999999998765543
No 317
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.93 E-value=0.058 Score=48.73 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=37.2
Q ss_pred ccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHH
Q 013826 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 68 (436)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 68 (436)
+.+.|.+.+..++. .+.+++++++||||||... -+++..+.... ++.+++.+=.+.+|
T Consensus 129 ~~~~~~~~L~~~v~---~~~nilI~G~tGSGKTTll-~aL~~~i~~~~-~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAID---SRLNIVISGGTGSGKTTLA-NAVIAEIVASA-PEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHHH-HHHHHHHhcCC-CCceEEEecCCccc
Confidence 55677777776665 4678999999999999753 33444443211 33466666555554
No 318
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.91 E-value=0.048 Score=47.05 Aligned_cols=62 Identities=21% Similarity=0.138 Sum_probs=39.0
Q ss_pred HHhhh-CCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 14 WQETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 14 ~~~~~-~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
+++++ ..+-.+..+++.+++|+|||..++..+.+.+.+. +.+++|++-... ..++.+.+..+
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~---ge~vlyvs~ee~-~~~l~~~~~s~ 70 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNF---GEKVLYVSFEEP-PEELIENMKSF 70 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH---T--EEEEESSS--HHHHHHHHHTT
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhc---CCcEEEEEecCC-HHHHHHHHHHc
Confidence 34444 2334567899999999999998777666666551 336888874433 35555565554
No 319
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.86 E-value=0.18 Score=51.07 Aligned_cols=78 Identities=6% Similarity=0.109 Sum_probs=63.6
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEec
Q 013826 287 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 366 (436)
Q Consensus 287 ~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~~ 366 (436)
+.++||.+|+++.+.++.+.|++.- +..+..+||+++..+|.+.+.+..+|+.+|+|+|...- -..++++..+|+-.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f--g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF--GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh--CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEEC
Confidence 6689999999999999999998642 25788999999999999999999999999999997422 24566778777655
Q ss_pred C
Q 013826 367 K 367 (436)
Q Consensus 367 ~ 367 (436)
.
T Consensus 267 e 267 (679)
T PRK05580 267 E 267 (679)
T ss_pred C
Confidence 3
No 320
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.86 E-value=0.041 Score=54.09 Aligned_cols=38 Identities=16% Similarity=0.061 Sum_probs=22.6
Q ss_pred hhHHHHHhhhCCCCCC--Cc-EEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|.++.+.+...+..+ .+ .|+++|.|+|||.++-..+.
T Consensus 20 Gq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 20 GQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4544444333333222 33 67899999999987655443
No 321
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.83 E-value=0.079 Score=47.55 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=25.7
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHH
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 73 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~ 73 (436)
.++|+++|+|+|||..+-+.+. ..+.+.-+.+=+.-|.+-+.+..
T Consensus 163 pSmIlWGppG~GKTtlArlia~----tsk~~SyrfvelSAt~a~t~dvR 207 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIAS----TSKKHSYRFVELSATNAKTNDVR 207 (554)
T ss_pred CceEEecCCCCchHHHHHHHHh----hcCCCceEEEEEeccccchHHHH
Confidence 6799999999999976433222 11122223444455555444333
No 322
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.81 E-value=0.13 Score=43.24 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=17.7
Q ss_pred CcEEEECCCCchHHHHhHHHHH
Q 013826 25 RDLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~ 46 (436)
.+.++.+|+|+|||......+.
T Consensus 49 P~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHH
Confidence 7899999999999987544443
No 323
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.76 E-value=0.16 Score=52.86 Aligned_cols=81 Identities=11% Similarity=0.255 Sum_probs=67.1
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhh-cccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-CcccccCCCCCCeEE
Q 013826 286 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 363 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~~~Gidi~~~~~vi 363 (436)
.+.+++|.+|+...|.+.++.+++. ...+..+..+++..+..++...++.+.+|+.+|+|+|. .+...+.+.++..+|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 4578999999999999999988864 23347788899999888899999999999999999996 455667888888877
Q ss_pred Eec
Q 013826 364 NYD 366 (436)
Q Consensus 364 ~~~ 366 (436)
+-.
T Consensus 579 IDE 581 (926)
T TIGR00580 579 IDE 581 (926)
T ss_pred eec
Confidence 644
No 324
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.75 E-value=0.051 Score=55.68 Aligned_cols=39 Identities=21% Similarity=0.045 Sum_probs=24.3
Q ss_pred hhHHHHHhhhCCCCCC--Cc-EEEECCCCchHHHHhHHHHHH
Q 013826 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYALPIVQ 47 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~i~~~~tGsGKT~~~~~~~~~ 47 (436)
+|.++...+...+..+ .+ .|+.+|.|+|||.++.+.+..
T Consensus 19 Gqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~ 60 (824)
T PRK07764 19 GQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARS 60 (824)
T ss_pred CcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3544444443333333 34 689999999999887665443
No 325
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.70 E-value=0.0036 Score=50.82 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=25.3
Q ss_pred EEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhh
Q 013826 28 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 82 (436)
Q Consensus 28 i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 82 (436)
++.|+=|.|||.+.-+++...+..+ ..++++.+|+.+-+...++.+...+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~---~~~I~vtAP~~~~~~~lf~~~~~~l~~ 52 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG---KIRILVTAPSPENVQTLFEFAEKGLKA 52 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS--------EEEE-SS--S-HHHHHCC------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc---CceEEEecCCHHHHHHHHHHHHhhccc
Confidence 4788999999976544433333222 146999999999888777766655443
No 326
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.66 E-value=0.064 Score=48.57 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=37.3
Q ss_pred ccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHH
Q 013826 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 68 (436)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 68 (436)
+.+.|.+.+..++. .+.++++.++||+|||.. +.+++..+... .+..+++.+-.+.++
T Consensus 133 ~~~~~~~~L~~~v~---~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~-~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVR---AHRNILVIGGTGSGKTTL-VNAIINEMVIQ-DPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHH-HHHHHHhhhhc-CCCceEEEEcCCCcc
Confidence 45667777766654 578999999999999964 33344333211 134467776666654
No 327
>PHA02533 17 large terminase protein; Provisional
Probab=94.65 E-value=0.17 Score=49.32 Aligned_cols=71 Identities=14% Similarity=0.015 Sum_probs=49.5
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
.|+|+|.+.+..+. .++-.++..+=..|||.++...++...... ++..+++++|+...+..+++.++....
T Consensus 59 ~L~p~Q~~i~~~~~----~~R~~ii~~aRq~GKStl~a~~al~~a~~~--~~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMH----KNRFNACNLSRQLGKTTVVAIFLLHYVCFN--KDKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHh----cCeEEEEEEcCcCChHHHHHHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 47889988877653 234456777778999988765444333322 455899999999998888877775543
No 328
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.65 E-value=0.22 Score=48.50 Aligned_cols=78 Identities=8% Similarity=0.114 Sum_probs=63.1
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEe
Q 013826 286 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~ 365 (436)
.++++||.+|++..+.++++.|++.. +..+..+|++++..+|.+.+.+..+|+.+|+|+|...-. ..++++..||+-
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f--~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVD 100 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRF--GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVD 100 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHh--CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEE
Confidence 36689999999999999999998642 256788999999999999999999999999999964221 346677877765
Q ss_pred c
Q 013826 366 D 366 (436)
Q Consensus 366 ~ 366 (436)
.
T Consensus 101 E 101 (505)
T TIGR00595 101 E 101 (505)
T ss_pred C
Confidence 4
No 329
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.56 E-value=0.043 Score=49.64 Aligned_cols=41 Identities=15% Similarity=0.120 Sum_probs=31.6
Q ss_pred ccchhHHHHHhhhCCCCCC---CcEEEECCCCchHHHHhHHHHH
Q 013826 6 LFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~---~~~i~~~~tGsGKT~~~~~~~~ 46 (436)
++|||...++.+...+.++ ...++.+|.|.||+..+...+.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~ 46 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQ 46 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHH
Confidence 5899999999988776655 2456899999999987654443
No 330
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.55 E-value=0.17 Score=50.84 Aligned_cols=93 Identities=10% Similarity=0.105 Sum_probs=72.8
Q ss_pred cCcCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEec
Q 013826 270 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 347 (436)
Q Consensus 270 ~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t 347 (436)
+...|.+.....+... .++.+||.+|.+...-++.+.|+..-+ .++..+|+++++.+|.+.+.+..+|+.+|+|+|
T Consensus 226 TGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg--~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt 303 (730)
T COG1198 226 TGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFG--AKVAVLHSGLSPGERYRVWRRARRGEARVVIGT 303 (730)
T ss_pred CCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhC--CChhhhcccCChHHHHHHHHHHhcCCceEEEEe
Confidence 3455666666655443 467899999999999999999886432 789999999999999999999999999999999
Q ss_pred CCcccccCCCCCCeEEEe
Q 013826 348 DAMTRGMDVEGVNNVVNY 365 (436)
Q Consensus 348 ~~~~~Gidi~~~~~vi~~ 365 (436)
... .=.-++++..+|..
T Consensus 304 RSA-lF~Pf~~LGLIIvD 320 (730)
T COG1198 304 RSA-LFLPFKNLGLIIVD 320 (730)
T ss_pred chh-hcCchhhccEEEEe
Confidence 752 23355677776653
No 331
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.54 E-value=0.079 Score=46.03 Aligned_cols=62 Identities=15% Similarity=0.077 Sum_probs=40.7
Q ss_pred HHHhhhC-CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 13 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 13 a~~~~~~-~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
.+++++. .+..+..+++.+|+|+|||..++..+.+.+. .+.+++|++-. .-..|..+.+..+
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~----~ge~~lyvs~e-e~~~~i~~~~~~~ 71 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ----MGEPGIYVALE-EHPVQVRRNMAQF 71 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHH----cCCcEEEEEee-CCHHHHHHHHHHh
Confidence 4455544 3445678999999999999887665665543 34478888843 3445555555554
No 332
>PRK05973 replicative DNA helicase; Provisional
Probab=94.51 E-value=0.11 Score=44.59 Aligned_cols=58 Identities=16% Similarity=0.080 Sum_probs=39.0
Q ss_pred hhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 17 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 17 ~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
+...+..+.-++|.|++|+|||..++..+.+... .+.+++|++-... ..|+.+.+..+
T Consensus 57 l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~----~Ge~vlyfSlEes-~~~i~~R~~s~ 114 (237)
T PRK05973 57 LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK----SGRTGVFFTLEYT-EQDVRDRLRAL 114 (237)
T ss_pred hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh----cCCeEEEEEEeCC-HHHHHHHHHHc
Confidence 4445556778899999999999887665655543 3446888875433 45555566554
No 333
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.50 E-value=0.22 Score=47.47 Aligned_cols=36 Identities=28% Similarity=0.315 Sum_probs=24.1
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcC
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P 64 (436)
+.+++.||+|+|||..+.. +...+.. .+.+++++..
T Consensus 142 npl~L~G~~G~GKTHLl~A-i~~~l~~---~~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQA-AVHALRE---SGGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHHH-HHHHHHH---cCCCEEEeeH
Confidence 4589999999999986543 3333332 2456777764
No 334
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.50 E-value=0.2 Score=47.41 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=41.9
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHH-HHHHHHHHHHHhhhhhCc
Q 013826 27 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD-LALQVKDVFAAIAPAVGL 85 (436)
Q Consensus 27 ~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~-l~~q~~~~~~~~~~~~~~ 85 (436)
.++.++.|||||......++..+...+ ++.+++++-|+.. +..-+...+.......|+
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~-~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~ 62 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINK-KQQNILAARKVQNSIRDSVFKDIENLLSIEGI 62 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcC-CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCC
Confidence 578999999999988777666665531 3467888888877 555666777766655554
No 335
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.46 E-value=0.069 Score=52.74 Aligned_cols=38 Identities=18% Similarity=0.045 Sum_probs=24.9
Q ss_pred hhHHHHHhhhCCCCCC--Cc-EEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|..+.+.+...+..+ .+ .++++|.|+|||.++...+.
T Consensus 20 GQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 20 GQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4666655555444343 33 48999999999987655443
No 336
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=94.46 E-value=0.025 Score=60.73 Aligned_cols=95 Identities=23% Similarity=0.394 Sum_probs=76.6
Q ss_pred CcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccch-----------HHHHHHHHHHhcCCeeEEEecCCcccccCC
Q 013826 288 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ-----------SVRSKTLKAFREGKIQVLVSSDAMTRGMDV 356 (436)
Q Consensus 288 ~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi 356 (436)
-..++|++....+....+.+.+....+... +.|.+.+ ..+.+++..|....+++|++|.++.+|+|+
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~ 370 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLF--VTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDV 370 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcce--eeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcch
Confidence 357999999999999999888764322222 3333221 135688999999999999999999999999
Q ss_pred CCCCeEEEecCCCChhHHHHHhhhcccC
Q 013826 357 EGVNNVVNYDKPAYIKTYIHRAGRTARA 384 (436)
Q Consensus 357 ~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 384 (436)
+.++.+++++.|.....|+|..||+.+.
T Consensus 371 ~~~~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 371 PKCNLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhhhhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999999999654
No 337
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.38 E-value=0.087 Score=47.15 Aligned_cols=60 Identities=23% Similarity=0.322 Sum_probs=40.3
Q ss_pred CCcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHH
Q 013826 3 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 70 (436)
Q Consensus 3 ~~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~ 70 (436)
|..+.+.|...+..+.. ...++++++.||||||.. +..+...-.+..+++.+=-|.+|..
T Consensus 155 ~gt~~~~~a~~L~~av~---~r~NILisGGTGSGKTTl-----LNal~~~i~~~eRvItiEDtaELql 214 (355)
T COG4962 155 FGTMIRRAAKFLRRAVG---IRCNILISGGTGSGKTTL-----LNALSGFIDSDERVITIEDTAELQL 214 (355)
T ss_pred cCCcCHHHHHHHHHHHh---hceeEEEeCCCCCCHHHH-----HHHHHhcCCCcccEEEEeehhhhcc
Confidence 55677778777776665 357999999999999974 2222221224447888877776643
No 338
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.38 E-value=0.097 Score=50.74 Aligned_cols=61 Identities=18% Similarity=0.097 Sum_probs=40.7
Q ss_pred HHhhhCC-CCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 14 WQETIGP-GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 14 ~~~~~~~-~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
++..+.. +..+..+++.+|+|+|||..++..+.+.+. .+.+++|++-- +-..|+.+.+..+
T Consensus 252 lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~----~ge~~~y~s~e-Es~~~i~~~~~~l 313 (484)
T TIGR02655 252 LDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA----NKERAILFAYE-ESRAQLLRNAYSW 313 (484)
T ss_pred HHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEEee-CCHHHHHHHHHHc
Confidence 4444432 344677899999999999886665555443 34478888743 4456677777665
No 339
>PRK09183 transposase/IS protein; Provisional
Probab=94.35 E-value=0.58 Score=41.17 Aligned_cols=46 Identities=20% Similarity=0.180 Sum_probs=29.6
Q ss_pred CCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHH
Q 013826 21 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q 71 (436)
+..+.++++.+|+|+|||..+.......+. .+.+++++. ...+..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~----~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVR----AGIKVRFTT-AADLLLQ 144 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH----cCCeEEEEe-HHHHHHH
Confidence 446788999999999999876554433332 334576664 3345433
No 340
>PF13173 AAA_14: AAA domain
Probab=94.31 E-value=0.42 Score=36.87 Aligned_cols=18 Identities=28% Similarity=0.494 Sum_probs=15.2
Q ss_pred CCcEEEECCCCchHHHHh
Q 013826 24 ERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~ 41 (436)
++-+++.||.|+|||..+
T Consensus 2 ~~~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLL 19 (128)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 466889999999999864
No 341
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=94.30 E-value=0.25 Score=48.36 Aligned_cols=90 Identities=14% Similarity=0.278 Sum_probs=71.2
Q ss_pred HHHHHHHhc-CCCcEEEEcCCchhHHHHHHHHhhhc-ccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-Ccccc
Q 013826 277 YLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRG 353 (436)
Q Consensus 277 ~l~~~l~~~-~~~~~lvf~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~~~G 353 (436)
.+.+++... .+.++.+.+||--.|++-++.+.+.- ..++.+..+.|.+....|.++++...+|+.+++|+|. .+.+.
T Consensus 300 A~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~ 379 (677)
T COG1200 300 ALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDK 379 (677)
T ss_pred HHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcc
Confidence 334434333 46789999999777777666665542 2358899999999999999999999999999999997 57789
Q ss_pred cCCCCCCeEEEec
Q 013826 354 MDVEGVNNVVNYD 366 (436)
Q Consensus 354 idi~~~~~vi~~~ 366 (436)
+++.++..||.-.
T Consensus 380 V~F~~LgLVIiDE 392 (677)
T COG1200 380 VEFHNLGLVIIDE 392 (677)
T ss_pred eeecceeEEEEec
Confidence 9999998888644
No 342
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.28 E-value=0.2 Score=48.09 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=19.5
Q ss_pred CCCCcEEEECCCCchHHHHhHHHHHH
Q 013826 22 LFERDLCINSPTGSGKTLSYALPIVQ 47 (436)
Q Consensus 22 ~~~~~~i~~~~tGsGKT~~~~~~~~~ 47 (436)
..++.+.+.+|+|+|||.++...+..
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34677889999999999876554443
No 343
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.26 E-value=0.12 Score=46.52 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=36.1
Q ss_pred ccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHH
Q 013826 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 68 (436)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 68 (436)
+.+.|.+.+..++. .+.+++++++||||||... -+++..+... .+..+++.+=.+.++
T Consensus 117 ~~~~~~~~L~~~v~---~~~~ilI~G~tGSGKTTll-~al~~~i~~~-~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVL---ARKNILVVGGTGSGKTTLA-NALLAEIAKN-DPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHHH-HHHHHHhhcc-CCCceEEEECCchhh
Confidence 34445556665554 4689999999999999753 3344444321 134467777666555
No 344
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.24 E-value=0.092 Score=52.01 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=25.0
Q ss_pred hhHHHHHhhhCCCCCC---CcEEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|..+...+...+..+ ...|+++|.|+|||.++...+.
T Consensus 20 GQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 20 AQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHH
Confidence 5666655544444333 3478999999999987655443
No 345
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=94.22 E-value=0.17 Score=46.67 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=18.8
Q ss_pred CCCCCCCcEEEECCCCchHHHHh
Q 013826 19 GPGLFERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 19 ~~~~~~~~~i~~~~tGsGKT~~~ 41 (436)
.++-.|+..+|.+|.|+|||..+
T Consensus 164 ~PIGkGQR~lIvgppGvGKTTLa 186 (416)
T PRK09376 164 APIGKGQRGLIVAPPKAGKTVLL 186 (416)
T ss_pred cccccCceEEEeCCCCCChhHHH
Confidence 34556899999999999999643
No 346
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=94.20 E-value=0.075 Score=52.18 Aligned_cols=69 Identities=25% Similarity=0.043 Sum_probs=50.9
Q ss_pred ccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHh--hcCCccEEEEcCCHHHHHHHHHHHHH
Q 013826 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~--~~~~~~~lil~P~~~l~~q~~~~~~~ 78 (436)
+-+-|+.|++... +.+-.|+.+|+|+|||++.+.++-..+.+. ......++++|-|...++|....+-.
T Consensus 379 ldsSq~~A~qs~l----tyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 379 LDSSQQFAKQSKL----TYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred ecHHHHHHHHHHh----hhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh
Confidence 4456877776654 467789999999999999877666555554 22344799999999999997766554
No 347
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.20 E-value=0.05 Score=49.71 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=31.8
Q ss_pred cccchhHHHHHhhhCCCCCC--C-cEEEECCCCchHHHHhHHHH
Q 013826 5 SLFPVQVAVWQETIGPGLFE--R-DLCINSPTGSGKTLSYALPI 45 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~--~-~~i~~~~tGsGKT~~~~~~~ 45 (436)
.++|||...++.+...+.++ . ..++.+|.|.||+..+...+
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A 45 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHH
Confidence 47899999999988776554 3 46689999999998755433
No 348
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.19 E-value=0.46 Score=36.08 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=31.9
Q ss_pred EECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc-----CCHHHHHHHHHHHHHhh
Q 013826 29 INSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL-----PTRDLALQVKDVFAAIA 80 (436)
Q Consensus 29 ~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~-----P~~~l~~q~~~~~~~~~ 80 (436)
+.++||+|||+++-+.+......+ .+..-+.... |...-+.+-.+.++.+.
T Consensus 58 fHG~tGtGKn~v~~liA~~ly~~G-~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I 113 (127)
T PF06309_consen 58 FHGWTGTGKNFVSRLIAEHLYKSG-MKSPFVHQFIATHHFPHNSNVDEYKEQLKSWI 113 (127)
T ss_pred eecCCCCcHHHHHHHHHHHHHhcc-cCCCceeeecccccCCCchHHHHHHHHHHHHH
Confidence 689999999999877666545443 3333333332 55555665555665553
No 349
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.15 E-value=0.041 Score=53.69 Aligned_cols=38 Identities=16% Similarity=0.009 Sum_probs=23.1
Q ss_pred hhHHHHHhhhCCCCCC--Cc-EEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|.++.+.+...+..+ .+ .|+.+|.|+|||.++...+.
T Consensus 20 Gq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 20 GQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred CcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4555544443333333 34 58999999999987655433
No 350
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.08 E-value=0.25 Score=52.82 Aligned_cols=80 Identities=11% Similarity=0.213 Sum_probs=64.8
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhh-cccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-CcccccCCCCCCeEE
Q 013826 286 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 363 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~~~Gidi~~~~~vi 363 (436)
.+.+++|.+|+.+.|.++++.+++. ...++.+..+++..+..++...++...+|..+|+|+|. .+...+.+.++..+|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4668999999999999999998863 33346788889988998999999999999999999996 455556777788777
Q ss_pred Ee
Q 013826 364 NY 365 (436)
Q Consensus 364 ~~ 365 (436)
+-
T Consensus 728 ID 729 (1147)
T PRK10689 728 VD 729 (1147)
T ss_pred Ee
Confidence 54
No 351
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.08 E-value=0.27 Score=45.08 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.6
Q ss_pred CcEEEECCCCchHHHHhH
Q 013826 25 RDLCINSPTGSGKTLSYA 42 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~ 42 (436)
.++++.+|+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 579999999999998654
No 352
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.08 E-value=0.18 Score=44.35 Aligned_cols=39 Identities=23% Similarity=0.074 Sum_probs=28.6
Q ss_pred CCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013826 21 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
+..+.-+++.+++|+|||..++..+...+. .+.+++|++
T Consensus 33 ip~gs~~lI~G~pGtGKT~l~~qf~~~~a~----~Ge~vlyis 71 (259)
T TIGR03878 33 IPAYSVINITGVSDTGKSLMVEQFAVTQAS----RGNPVLFVT 71 (259)
T ss_pred eECCcEEEEEcCCCCCHHHHHHHHHHHHHh----CCCcEEEEE
Confidence 345677899999999999887665555443 344788887
No 353
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.06 E-value=0.35 Score=43.73 Aligned_cols=42 Identities=24% Similarity=0.150 Sum_probs=32.2
Q ss_pred cccchhHHHHHhhhCCCCCC---CcEEEECCCCchHHHHhHHHHH
Q 013826 5 SLFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~---~~~i~~~~tGsGKT~~~~~~~~ 46 (436)
.++|+|...++.+...+.++ ...++.+|.|.||+..+...+.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~ 47 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSR 47 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHH
Confidence 57899999999988765444 3578899999999987544333
No 354
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.03 E-value=0.062 Score=52.74 Aligned_cols=38 Identities=21% Similarity=-0.006 Sum_probs=23.9
Q ss_pred hhHHHHHhhhCCCCCC---CcEEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|..+...+...+..+ ...++.+|.|+|||.++...+.
T Consensus 20 Gqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk 60 (563)
T PRK06647 20 GQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFAR 60 (563)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4555555444444333 3368999999999987654333
No 355
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=94.01 E-value=0.064 Score=47.82 Aligned_cols=52 Identities=25% Similarity=0.209 Sum_probs=34.5
Q ss_pred cchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcC
Q 013826 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (436)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P 64 (436)
++.|..-.+.+. .+.-++-.+|-|+|||+.+...+.+.+.++..+ ++|..=|
T Consensus 130 t~~Q~~y~eai~----~~di~fGiGpAGTGKTyLava~av~al~~~~v~--rIiLtRP 181 (348)
T COG1702 130 TPGQNMYPEAIE----EHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVR--RIILTRP 181 (348)
T ss_pred ChhHHHHHHHHH----hcCeeeeecccccCChhhhHHhHhhhhhhcccc--eeeecCc
Confidence 456655444433 345577799999999999888888887775322 4444446
No 356
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.95 E-value=0.06 Score=53.49 Aligned_cols=38 Identities=21% Similarity=0.137 Sum_probs=23.4
Q ss_pred hhHHHHHhhhCCCCCC---CcEEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|.++...+...+..+ ...|+.||.|+|||.++...+.
T Consensus 20 Gq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk 60 (620)
T PRK14948 20 GQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAK 60 (620)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHH
Confidence 4444444433333233 4578999999999987655444
No 357
>PTZ00293 thymidine kinase; Provisional
Probab=93.93 E-value=0.22 Score=41.76 Aligned_cols=40 Identities=20% Similarity=0.125 Sum_probs=27.2
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHH
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 67 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 67 (436)
|.=-++.+|+++|||.-.+..+... ...+.+++++-|..+
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y----~~ag~kv~~~kp~~D 43 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRF----TYSEKKCVVIKYSKD 43 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHH----HHcCCceEEEEeccc
Confidence 4456889999999997543333322 234557999999765
No 358
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.91 E-value=0.079 Score=52.99 Aligned_cols=37 Identities=19% Similarity=0.056 Sum_probs=24.0
Q ss_pred hhHHHHHhhhCCCCCC--Cc-EEEECCCCchHHHHhHHHH
Q 013826 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYALPI 45 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~i~~~~tGsGKT~~~~~~~ 45 (436)
+|..+.+.+...+..+ .+ .|+.||.|+|||.++-..+
T Consensus 22 GQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLA 61 (725)
T PRK07133 22 GQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFA 61 (725)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHH
Confidence 5656555544444343 33 5899999999998765443
No 359
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.84 E-value=0.79 Score=41.79 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=31.6
Q ss_pred ccchhHHHHHhhhCCCCCCC-cEEEECCCCchHHHHhHHHHHH
Q 013826 6 LFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQ 47 (436)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~-~~i~~~~tGsGKT~~~~~~~~~ 47 (436)
++|+|...++.+.....+-. ..++.+|.|.|||..+...+..
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~ 44 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQA 44 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHH
Confidence 58999999999886643333 4779999999999876554443
No 360
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.78 E-value=0.26 Score=53.32 Aligned_cols=131 Identities=13% Similarity=0.153 Sum_probs=73.4
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHh
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 103 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 103 (436)
.+++++.|+.|||||.+...-++..+..+ .+..++++++-|+.-+.++.+.+...+..... ..+..........
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~-~~~~~i~~~t~t~~aa~em~~Ri~~~L~~~~~-----~~~~~l~~~l~~~ 83 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNG-VPPSKILCLTYTKAAAAEMQNRVFDRLGEWAV-----LDDAELRARLEAL 83 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcC-CCCCeEEEEecCHHHHHHHHHHHHHHHHHHhc-----CChHHHHHHHHHh
Confidence 57899999999999998766666666554 34558999999999999988877766543210 0011111111111
Q ss_pred hccccccccccCCchh-HHHhhccCCcEEEeCchhHHHHhhcCCCccc-CCccEEEEehh
Q 013826 104 IKRPKLEAGICYDPED-VLQELQSAVDILVATPGRLMDHINATRGFTL-EHLCYLVVDET 161 (436)
Q Consensus 104 ~~~~~~~~~~~~~~~~-~~~~~~~~~~Iii~T~~~l~~~l~~~~~~~~-~~~~~iIiDE~ 161 (436)
...+. .......... .++.+.+...+-|.|.+.++..+.+...+.. -...+=|.||.
T Consensus 84 ~~~~~-~~~~l~~ar~l~~~~l~~~~~l~I~Ti~sf~~~l~r~~~~~~~~~~~f~~~d~~ 142 (1141)
T TIGR02784 84 EGKRP-DAAKLAEARRLFARALETPGGLKIQTIHAFCESLLHQFPLEANVAGHFSVMDDR 142 (1141)
T ss_pred cCCCC-ChHHHHHHHHHHHHHHhCCCCceEeeHHHHHHHHHHHCHHHhCCCCCCCccchH
Confidence 10000 0000001111 2233444567899999999877655432211 12334556773
No 361
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.74 E-value=0.09 Score=50.94 Aligned_cols=38 Identities=21% Similarity=-0.041 Sum_probs=22.9
Q ss_pred hhHHHHHhhhCCCCCC--Cc-EEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|.++.+.+...+..+ .+ .++.||.|+|||.++...+.
T Consensus 18 Gqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk 58 (535)
T PRK08451 18 GQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFAR 58 (535)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHH
Confidence 4554444443333333 33 48999999999987654333
No 362
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.72 E-value=0.12 Score=49.43 Aligned_cols=38 Identities=21% Similarity=0.048 Sum_probs=24.3
Q ss_pred hhHHHHHhhhCCCCCC---CcEEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|..+...+...+..+ ...|+.||+|+|||.++...+.
T Consensus 21 Gq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 21 GQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred CcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4555555444444333 3468999999999987655444
No 363
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.68 E-value=0.52 Score=47.67 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=17.9
Q ss_pred CCcEEEECCCCchHHHHhHHHHHH
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQ 47 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~ 47 (436)
++-+.+.+|||+|||.++...+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 345679999999999876555443
No 364
>PRK06904 replicative DNA helicase; Validated
Probab=93.62 E-value=0.81 Score=44.13 Aligned_cols=59 Identities=12% Similarity=-0.112 Sum_probs=34.9
Q ss_pred HhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHH
Q 013826 15 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 77 (436)
Q Consensus 15 ~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 77 (436)
+.+...+..++=+++.|.||.|||..++-.+...... .+..++|++.-.. ..|+...+.
T Consensus 212 D~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~---~g~~Vl~fSlEMs-~~ql~~Rll 270 (472)
T PRK06904 212 DKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA---SEKPVLVFSLEMP-AEQIMMRML 270 (472)
T ss_pred HHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh---cCCeEEEEeccCC-HHHHHHHHH
Confidence 4444445556668899999999998765444433322 2345777765433 344444433
No 365
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.59 E-value=0.4 Score=44.84 Aligned_cols=35 Identities=26% Similarity=0.174 Sum_probs=22.9
Q ss_pred cEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013826 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
-+++.+|+|+|||.++...+...... .+.++.+++
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~---~G~~V~Lit 259 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLH---MGKSVSLYT 259 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh---cCCeEEEec
Confidence 37789999999999876655543222 233555554
No 366
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.59 E-value=0.19 Score=46.68 Aligned_cols=35 Identities=20% Similarity=0.113 Sum_probs=21.7
Q ss_pred hhHHHHHhhhCCCCCC---CcEEEECCCCchHHHHhHH
Q 013826 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~i~~~~tGsGKT~~~~~ 43 (436)
+|.++.+.+...+..+ +..++.||+|+|||..+..
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~ 55 (355)
T TIGR02397 18 GQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARI 55 (355)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 4444444444333333 3468999999999976543
No 367
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.57 E-value=0.3 Score=44.89 Aligned_cols=36 Identities=22% Similarity=0.132 Sum_probs=23.6
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
++.+++.+|+|+|||.++...+..... .+.++.+++
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~----~g~~V~lIt 241 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLK----QNRTVGFIT 241 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH----cCCeEEEEe
Confidence 456789999999999876655544322 233555554
No 368
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.49 E-value=0.092 Score=50.65 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=23.3
Q ss_pred hhHHHHHhhhCCCCCC--Cc-EEEECCCCchHHHHhHHHH
Q 013826 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYALPI 45 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~i~~~~tGsGKT~~~~~~~ 45 (436)
+|..+...+...+..+ .+ .++.||.|+|||.++.+.+
T Consensus 20 Gq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lA 59 (486)
T PRK14953 20 GQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILA 59 (486)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4555555544444333 34 4789999999998765543
No 369
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.46 E-value=0.063 Score=47.38 Aligned_cols=37 Identities=16% Similarity=0.047 Sum_probs=28.9
Q ss_pred cchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHH
Q 013826 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~ 43 (436)
++...+..+.+...+..+.++++.+|+|+|||..+..
T Consensus 4 t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHH
Confidence 4556666677777677789999999999999987543
No 370
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=93.42 E-value=0.18 Score=43.94 Aligned_cols=22 Identities=27% Similarity=0.152 Sum_probs=18.5
Q ss_pred CCCCCCCcEEEECCCCchHHHH
Q 013826 19 GPGLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 19 ~~~~~~~~~i~~~~tGsGKT~~ 40 (436)
-++..|+.+++.+|.|+|||..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHH
Confidence 3456789999999999999964
No 371
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.39 E-value=1.4 Score=44.54 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=65.5
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhhcc----cceeEEEeccccchHHHHHHHHHHhc--------CCeeEEEecCCccccc
Q 013826 287 EEKCIVFTSSVESTHRLCTLLNHFGE----LRIKIKEYSGLQRQSVRSKTLKAFRE--------GKIQVLVSSDAMTRGM 354 (436)
Q Consensus 287 ~~~~lvf~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~r~~~~~~f~~--------g~~~vlv~t~~~~~Gi 354 (436)
....|+|.+++...+++....+..+. ....-..+.- -+..+..+++..|.+ |..-+.||=...++|+
T Consensus 561 p~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEP-r~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGl 639 (945)
T KOG1132|consen 561 PYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEP-RSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGL 639 (945)
T ss_pred ccceEEeccchHHHHHHHHHHHcchHHHHhhcccCceecc-CCccchHHHHHHHHHHhhCccccceEEEEEecccccCCC
Confidence 34599999999877777544433110 0011111111 123334455555543 2344567778999999
Q ss_pred CCCC--CCeEEEecCCC--------------------------------------ChhHHHHHhhhcccCCCC-ceEEEE
Q 013826 355 DVEG--VNNVVNYDKPA--------------------------------------YIKTYIHRAGRTARAGQL-GRCFTL 393 (436)
Q Consensus 355 di~~--~~~vi~~~~~~--------------------------------------s~~~~~Q~~GR~~R~~~~-g~~~~~ 393 (436)
|+.+ .+.||..+.|. ....+-|.+||+.|..++ |.++++
T Consensus 640 DFsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~ 719 (945)
T KOG1132|consen 640 DFSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILC 719 (945)
T ss_pred CccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEe
Confidence 9985 66788877651 122357999999997665 777755
Q ss_pred ecch
Q 013826 394 LHKD 397 (436)
Q Consensus 394 ~~~~ 397 (436)
.++.
T Consensus 720 D~Rf 723 (945)
T KOG1132|consen 720 DDRF 723 (945)
T ss_pred echh
Confidence 4443
No 372
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.32 E-value=0.27 Score=50.38 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=18.6
Q ss_pred CCcEEEECCCCchHHHHhHHHHHH
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQ 47 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~ 47 (436)
.++.++.+|+|+|||..+-..+..
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999875444443
No 373
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.31 Score=46.18 Aligned_cols=17 Identities=35% Similarity=0.667 Sum_probs=15.1
Q ss_pred CcEEEECCCCchHHHHh
Q 013826 25 RDLCINSPTGSGKTLSY 41 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~ 41 (436)
+.+++.+|+|+|||+.+
T Consensus 257 KGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIA 273 (744)
T ss_pred eeEEEECCCCCChhHHH
Confidence 67899999999999863
No 374
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.29 E-value=0.15 Score=50.73 Aligned_cols=38 Identities=18% Similarity=0.038 Sum_probs=24.0
Q ss_pred hhHHHHHhhhCCCCCC--Cc-EEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~~-~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|.++...+...+..+ .+ .|++||.|+|||.++.+.+.
T Consensus 21 Gq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk 61 (614)
T PRK14971 21 GQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAK 61 (614)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHH
Confidence 4555555444444344 34 68999999999986544333
No 375
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.21 E-value=0.22 Score=41.39 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=26.1
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHH
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~ 40 (436)
.+.+.|.+.+...+. .+..+++.+|||+|||..
T Consensus 9 ~~~~~~~~~l~~~v~---~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVE---ARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHh---CCCEEEEECCCCCCHHHH
Confidence 456677777776655 578899999999999975
No 376
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.17 E-value=0.2 Score=46.09 Aligned_cols=38 Identities=13% Similarity=-0.095 Sum_probs=24.9
Q ss_pred hhHHHHHhhhCCCCCCC---cEEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFER---DLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~~---~~i~~~~tGsGKT~~~~~~~~ 46 (436)
.|.++...+...+..++ ..++.+|.|+|||..+...+.
T Consensus 27 Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~ 67 (351)
T PRK09112 27 GHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLAN 67 (351)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHH
Confidence 34555555555444453 488999999999987654443
No 377
>PRK12608 transcription termination factor Rho; Provisional
Probab=93.12 E-value=0.34 Score=44.51 Aligned_cols=24 Identities=25% Similarity=0.152 Sum_probs=19.4
Q ss_pred CCCCCCcEEEECCCCchHHHHhHH
Q 013826 20 PGLFERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 20 ~~~~~~~~i~~~~tGsGKT~~~~~ 43 (436)
++-.|++++|.+|.|+|||..+..
T Consensus 129 PiGkGQR~LIvG~pGtGKTTLl~~ 152 (380)
T PRK12608 129 PIGKGQRGLIVAPPRAGKTVLLQQ 152 (380)
T ss_pred ecCCCceEEEECCCCCCHHHHHHH
Confidence 445689999999999999976433
No 378
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=93.11 E-value=0.21 Score=50.69 Aligned_cols=71 Identities=20% Similarity=0.175 Sum_probs=55.9
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
.|++-|.+|.... ...++|.|+.|||||.+..--+...+...+.....++.++=|+..+.++.+.+..++.
T Consensus 2 ~Ln~~Q~~av~~~------~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP------DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC------CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5788998876542 5778999999999999876666666666555555799999998888888888888775
No 379
>PRK04328 hypothetical protein; Provisional
Probab=93.11 E-value=0.2 Score=43.80 Aligned_cols=62 Identities=13% Similarity=0.039 Sum_probs=38.6
Q ss_pred HHHhhhCC-CCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 13 VWQETIGP-GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 13 a~~~~~~~-~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
.++.++.. +..+..+++.+++|+|||..++..+.+.+.. +.+++|++-. +-..+..+.+..+
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~----ge~~lyis~e-e~~~~i~~~~~~~ 73 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM----GEPGVYVALE-EHPVQVRRNMRQF 73 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhc----CCcEEEEEee-CCHHHHHHHHHHc
Confidence 44555543 3456778999999999998766655555433 3467887632 2333455555554
No 380
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.10 E-value=0.09 Score=51.71 Aligned_cols=72 Identities=18% Similarity=0.143 Sum_probs=50.6
Q ss_pred cccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHH-HHHHHhhh
Q 013826 5 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK-DVFAAIAP 81 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~-~~~~~~~~ 81 (436)
...|||.+.++.+.+.- -+.+.++.++-+|||.+.+..+...+.. ....++++.||...+.++. ..+...+.
T Consensus 16 ~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~---~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSIDQ---DPGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEEe---CCCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 56899998887665532 3678899999999998654444433333 2346999999999999877 34555544
No 381
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.08 E-value=0.083 Score=49.38 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=16.6
Q ss_pred CcEEEECCCCchHHHHhHHHHH
Q 013826 25 RDLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~ 46 (436)
...++.+|.|+|||..+...+.
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3478999999999987654433
No 382
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.07 E-value=0.3 Score=44.68 Aligned_cols=41 Identities=20% Similarity=0.172 Sum_probs=30.0
Q ss_pred ccchhHHHHHhhhCCCCCC-CcEEEECCCCchHHHHhHHHHH
Q 013826 6 LFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~-~~~i~~~~tGsGKT~~~~~~~~ 46 (436)
++|||...++++.....+- ...++.+|.|.||+..+...+.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~ 43 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQ 43 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999988642222 3467899999999987654443
No 383
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.03 E-value=0.42 Score=48.54 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=16.0
Q ss_pred CcEEEECCCCchHHHHhHH
Q 013826 25 RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~ 43 (436)
.++++.+|+|+|||.++..
T Consensus 53 ~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARI 71 (725)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5799999999999986543
No 384
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.01 E-value=0.21 Score=46.70 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=23.5
Q ss_pred hhHHHHHhhhCCCCCC---CcEEEECCCCchHHHHhHH
Q 013826 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~i~~~~tGsGKT~~~~~ 43 (436)
+|..+.+.+...+..+ ...+++||+|+|||..+..
T Consensus 21 g~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~ 58 (367)
T PRK14970 21 GQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARI 58 (367)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 5555555555444444 3688999999999976543
No 385
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.00 E-value=1 Score=42.93 Aligned_cols=50 Identities=10% Similarity=-0.121 Sum_probs=33.3
Q ss_pred HHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCC
Q 013826 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (436)
Q Consensus 13 a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~ 65 (436)
.++.++..+..++-+++.|+||+|||..++-.+...... .+.+++|++.-
T Consensus 183 ~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~---~g~~v~~fSlE 232 (421)
T TIGR03600 183 KLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALR---EGKPVLFFSLE 232 (421)
T ss_pred hHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh---CCCcEEEEECC
Confidence 345555556667778999999999998766555444322 34468888733
No 386
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=92.95 E-value=0.054 Score=53.32 Aligned_cols=63 Identities=22% Similarity=0.365 Sum_probs=49.0
Q ss_pred HHHHhcCCeeEEEecCCcccccCCCCCCe--------EEEecCCCChhHHHHHhhhcccCCCC-ceEEEEec
Q 013826 333 LKAFREGKIQVLVSSDAMTRGMDVEGVNN--------VVNYDKPAYIKTYIHRAGRTARAGQL-GRCFTLLH 395 (436)
Q Consensus 333 ~~~f~~g~~~vlv~t~~~~~Gidi~~~~~--------vi~~~~~~s~~~~~Q~~GR~~R~~~~-g~~~~~~~ 395 (436)
-++|-+|+..|-|-+...+.||.+..-+. =|-+..|||...-+|..||..|..+- +.-|+|..
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlI 921 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLI 921 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEe
Confidence 45677888889899999999999875433 35578899999999999999996543 55555543
No 387
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.89 E-value=0.24 Score=43.76 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=36.9
Q ss_pred CCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 21 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
+..++.+++.+++|+|||..++-.+.+.+.. +.++++++-. +...++.+.+..+.
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~----ge~vlyvs~~-e~~~~l~~~~~~~g 74 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGARE----GEPVLYVSTE-ESPEELLENARSFG 74 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc----CCcEEEEEec-CCHHHHHHHHHHcC
Confidence 4457889999999999998766655555443 4468888744 33445555555543
No 388
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=92.83 E-value=0.9 Score=39.30 Aligned_cols=103 Identities=14% Similarity=0.175 Sum_probs=67.1
Q ss_pred hHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCC----eeEEEecCCcccccCCCCCCeEEEecCCCChhHH
Q 013826 299 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK----IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 374 (436)
Q Consensus 299 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~----~~vlv~t~~~~~Gidi~~~~~vi~~~~~~s~~~~ 374 (436)
.-+.+...|.+.-..++.+..++++.+... -.|.++. ..|+|+-+.+++|+-++++.+.++...+.....+
T Consensus 95 s~~ei~~~l~~~~~~~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL 169 (239)
T PF10593_consen 95 SWEEIKPELPKAISDGIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTL 169 (239)
T ss_pred CHHHHHHHHHHHHhcCceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHH
Confidence 334444444333212367777776554432 2344333 7889999999999999999999999988877777
Q ss_pred HHHhhhc-ccCCCCceEEEEecchhHHHHHHHH
Q 013826 375 IHRAGRT-ARAGQLGRCFTLLHKDEVKRFKKLL 406 (436)
Q Consensus 375 ~Q~~GR~-~R~~~~g~~~~~~~~~~~~~~~~~~ 406 (436)
.||.-=- -|.|-.+.|-++.++.-...+..+.
T Consensus 170 ~QmgRwFGYR~gY~dl~Ri~~~~~l~~~f~~i~ 202 (239)
T PF10593_consen 170 MQMGRWFGYRPGYEDLCRIYMPEELYDWFRHIA 202 (239)
T ss_pred HHHhhcccCCcccccceEEecCHHHHHHHHHHH
Confidence 6664222 3444458899998877665555554
No 389
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=92.81 E-value=0.29 Score=49.26 Aligned_cols=17 Identities=35% Similarity=0.380 Sum_probs=14.5
Q ss_pred CcEEEECCCCchHHHHh
Q 013826 25 RDLCINSPTGSGKTLSY 41 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~ 41 (436)
..+++.+|||.|||-.+
T Consensus 522 gsFlF~GPTGVGKTELA 538 (786)
T COG0542 522 GSFLFLGPTGVGKTELA 538 (786)
T ss_pred eEEEeeCCCcccHHHHH
Confidence 36788999999999864
No 390
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.79 E-value=0.21 Score=47.18 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=27.9
Q ss_pred cchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHH
Q 013826 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 51 (436)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~ 51 (436)
.+.|.+.+..++.. ...=+++.+|||||||.+ +..++..+..
T Consensus 243 ~~~~~~~~~~~~~~--p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNR--PQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhC--CCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 67777777776651 123367899999999986 4455554433
No 391
>PRK08840 replicative DNA helicase; Provisional
Probab=92.73 E-value=1.2 Score=42.78 Aligned_cols=58 Identities=10% Similarity=-0.102 Sum_probs=35.0
Q ss_pred HhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHH
Q 013826 15 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 76 (436)
Q Consensus 15 ~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 76 (436)
+.+...+..++=+++.|.||.|||..++-.+...... .+..++|.+.-.. ..|+...+
T Consensus 208 D~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~---~~~~v~~fSlEMs-~~ql~~Rl 265 (464)
T PRK08840 208 NKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD---QDKPVLIFSLEMP-AEQLMMRM 265 (464)
T ss_pred HHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh---CCCeEEEEeccCC-HHHHHHHH
Confidence 4445555556678899999999998765544443322 2446777764433 33444333
No 392
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.69 E-value=0.22 Score=46.18 Aligned_cols=39 Identities=15% Similarity=-0.031 Sum_probs=27.0
Q ss_pred hhHHHHHhhhCCCCCC--C-cEEEECCCCchHHHHhHHHHHH
Q 013826 9 VQVAVWQETIGPGLFE--R-DLCINSPTGSGKTLSYALPIVQ 47 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~--~-~~i~~~~tGsGKT~~~~~~~~~ 47 (436)
+|.++.+.+...+.++ . ..++.+|.|+||+..+...+..
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~ 64 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARF 64 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 6777766665555444 3 4789999999999876554443
No 393
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.63 E-value=1.4 Score=42.40 Aligned_cols=101 Identities=13% Similarity=0.177 Sum_probs=70.9
Q ss_pred CCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhcccccccc
Q 013826 33 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 112 (436)
Q Consensus 33 tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (436)
.+.||+-..++++.+.+..+ -.+.++|.+-+.+-+.|++..+. ...++++..++|+.+....-
T Consensus 366 vF~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrd------------ 428 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRD------------ 428 (593)
T ss_pred eeeecchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHH------------
Confidence 46677777777777777665 45579999999999999888886 22378899999996643331
Q ss_pred ccCCchhHHHhh-ccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhH
Q 013826 113 ICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 163 (436)
Q Consensus 113 ~~~~~~~~~~~~-~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~ 163 (436)
+..... .....++||| +++.+ +.++.+..+||.++.-.
T Consensus 429 ------e~~~~FR~g~IwvLicT-----dll~R--GiDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 429 ------ETMERFRIGKIWVLICT-----DLLAR--GIDFKGVNLVINYDFPQ 467 (593)
T ss_pred ------HHHHHHhccCeeEEEeh-----hhhhc--cccccCcceEEecCCCc
Confidence 111122 2345799999 45555 36688999999988763
No 394
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=92.63 E-value=0.92 Score=42.81 Aligned_cols=132 Identities=14% Similarity=0.235 Sum_probs=92.4
Q ss_pred HHHhcCCCcEEEEcCCchhHHHHHHHHhhh-cccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-----Ccccc-
Q 013826 281 LLQSLGEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRG- 353 (436)
Q Consensus 281 ~l~~~~~~~~lvf~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-----~~~~G- 353 (436)
.++..++ ++|+..||+..+.+-++.+.+. +.+.-.++.+.|..++.+|...+. +.+|+|+|+ .+-.|
T Consensus 53 ~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~Gr 126 (542)
T COG1111 53 RLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA-----KKKVFVATPQVVENDLKAGR 126 (542)
T ss_pred HHHhcCC-eEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh-----hCCEEEeccHHHHhHHhcCc
Confidence 3444444 8999999999888888887764 334456888999999999987765 568999993 33455
Q ss_pred cCCCCCCeEEEecCCCChh--HHHHHhhhcccCCCCceEEEE--ecchhHHHHHHHHHHhcCCCCCCCC
Q 013826 354 MDVEGVNNVVNYDKPAYIK--TYIHRAGRTARAGQLGRCFTL--LHKDEVKRFKKLLQKADNDSCPIHS 418 (436)
Q Consensus 354 idi~~~~~vi~~~~~~s~~--~~~Q~~GR~~R~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (436)
+|+.++.++|+-....... .|++.+-.-.|...+-.++-+ ....+.+..+++++.+.-..+.+..
T Consensus 127 id~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrT 195 (542)
T COG1111 127 IDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRT 195 (542)
T ss_pred cChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEec
Confidence 9999999888766554433 467777767675433223333 3346788999999888777665544
No 395
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.62 E-value=0.64 Score=44.57 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=18.7
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHH
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQT 48 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~ 48 (436)
++-+.+.+|||+|||.++...+...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 4457799999999998866655433
No 396
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=92.62 E-value=0.74 Score=48.18 Aligned_cols=79 Identities=10% Similarity=0.277 Sum_probs=67.1
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhh-cccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-CcccccCCCCCCeEE
Q 013826 286 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 363 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~~~Gidi~~~~~vi 363 (436)
.++++.|.+||.-.|++-++-+++. .+..+.+..++.--+..|...+++..++|+++|+|+|. .++.++-+.++..+|
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 4578999999988888777777643 23448899998888999999999999999999999995 688899999999887
Q ss_pred E
Q 013826 364 N 364 (436)
Q Consensus 364 ~ 364 (436)
+
T Consensus 722 I 722 (1139)
T COG1197 722 I 722 (1139)
T ss_pred E
Confidence 6
No 397
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=92.62 E-value=0.08 Score=45.87 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=12.2
Q ss_pred EEEECCCCchHHHH
Q 013826 27 LCINSPTGSGKTLS 40 (436)
Q Consensus 27 ~i~~~~tGsGKT~~ 40 (436)
+++.|++|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 37899999999985
No 398
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=92.57 E-value=0.4 Score=43.33 Aligned_cols=55 Identities=20% Similarity=0.065 Sum_probs=36.9
Q ss_pred HHHhhhC--CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHH
Q 013826 13 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (436)
Q Consensus 13 a~~~~~~--~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q 71 (436)
.++.++. -+..+.-+.+.+|+|+|||..++..+..... .+.+++|+.....+-.+
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~----~g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQK----AGGTAAFIDAEHALDPV 98 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCcEEEEcccchhHHH
Confidence 4455554 4555667889999999999987665555443 34578888766555443
No 399
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.55 E-value=0.3 Score=43.14 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=23.9
Q ss_pred ccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHh
Q 013826 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~ 41 (436)
+.+.|.+.+..++.. .+..+++.+|||+|||.+.
T Consensus 64 ~~~~~~~~l~~~~~~--~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 64 LKPENLEIFRKLLEK--PHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred CCHHHHHHHHHHHhc--CCCEEEEECCCCCcHHHHH
Confidence 355677777666541 2356889999999999753
No 400
>PF12846 AAA_10: AAA-like domain
Probab=92.45 E-value=0.23 Score=44.85 Aligned_cols=42 Identities=29% Similarity=0.291 Sum_probs=28.9
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHH
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 69 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~ 69 (436)
+.++++.++||+|||..+...+...+. .+..++++=|..+..
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~----~g~~~~i~D~~g~~~ 42 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIR----RGPRVVIFDPKGDYS 42 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH----cCCCEEEEcCCchHH
Confidence 468999999999999876543333333 345688887765543
No 401
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.45 E-value=0.28 Score=51.05 Aligned_cols=35 Identities=20% Similarity=0.033 Sum_probs=23.7
Q ss_pred hhHHHHHhhhCCCCC--------C---CcEEEECCCCchHHHHhHH
Q 013826 9 VQVAVWQETIGPGLF--------E---RDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~--------~---~~~i~~~~tGsGKT~~~~~ 43 (436)
+|.+|+..+...+.. + ...++.+|||+|||.++-.
T Consensus 513 GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~ 558 (821)
T CHL00095 513 GQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKA 558 (821)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHH
Confidence 677777766544321 1 2468999999999986544
No 402
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.40 E-value=0.2 Score=44.29 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=39.2
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHH--HhhcCCccEEEEcCCHHHH-----------HHHHHHHHHhhhhhCceEEEe
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLS--NRAVRCLRALVVLPTRDLA-----------LQVKDVFAAIAPAVGLSVGLA 90 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~--~~~~~~~~~lil~P~~~l~-----------~q~~~~~~~~~~~~~~~v~~~ 90 (436)
++-+++.+|+|+|||-.+ .++.+.+. .........++=.....|- .+++..+..+...-|.-|+++
T Consensus 177 NRliLlhGPPGTGKTSLC-KaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLC-KALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeEEEEeCCCCCChhHHH-HHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 345778999999999643 22333221 1111112344445555554 444455556665557777777
Q ss_pred ccCcc
Q 013826 91 VGQSS 95 (436)
Q Consensus 91 ~~~~~ 95 (436)
..+..
T Consensus 256 IDEVE 260 (423)
T KOG0744|consen 256 IDEVE 260 (423)
T ss_pred eHHHH
Confidence 76654
No 403
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.35 E-value=0.14 Score=46.97 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=27.5
Q ss_pred cccchhHHHHHhhhCCCCCC--Cc-EEEECCCCchHHHHhHHHHH
Q 013826 5 SLFPVQVAVWQETIGPGLFE--RD-LCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~~~~~--~~-~i~~~~tGsGKT~~~~~~~~ 46 (436)
.+...|..+++.+...+..+ .+ .++.+|.|+||+..+...+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~ 50 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAK 50 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34445766666665555444 44 48999999999986544333
No 404
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.33 E-value=0.79 Score=43.16 Aligned_cols=64 Identities=19% Similarity=0.160 Sum_probs=34.3
Q ss_pred CCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEE
Q 013826 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGL 89 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~ 89 (436)
.++.+.+.+|||+|||.+....+...+...+ .....++.+.+..+.. .+.+..++...|+.+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~-~~~v~~i~~d~~riga--lEQL~~~a~ilGvp~~~ 253 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHG-ADKVALLTTDSYRIGG--HEQLRIYGKLLGVSVRS 253 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEecCCcchhH--HHHHHHHHHHcCCceec
Confidence 3566889999999999876544443322211 1223455566644432 22344444444555543
No 405
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.27 E-value=0.46 Score=42.98 Aligned_cols=55 Identities=18% Similarity=0.044 Sum_probs=37.6
Q ss_pred HHHhhhC--CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHH
Q 013826 13 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (436)
Q Consensus 13 a~~~~~~--~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q 71 (436)
.++.++. -+..+.-+.+.+|+|+|||..++..+..... .+.+++|+.....+-.+
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~----~g~~~vyId~E~~~~~~ 98 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK----LGGTVAFIDAEHALDPV 98 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCCEEEECccccHHHH
Confidence 4455554 3445567889999999999887666555443 34579999877665543
No 406
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.24 E-value=0.24 Score=41.30 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=16.7
Q ss_pred CcEEEECCCCchHHHHhHHHHH
Q 013826 25 RDLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~ 46 (436)
...++.+|+|+|||..+...+.
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~ 36 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAK 36 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999987544333
No 407
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.21 E-value=0.27 Score=45.02 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=27.0
Q ss_pred CCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHH
Q 013826 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 68 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 68 (436)
.+.++++.+|||||||... -+++..+. +..+++.+=.+.++
T Consensus 161 ~~~nilI~G~tGSGKTTll-~aLl~~i~----~~~rivtiEd~~El 201 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMS-KTLISAIP----PQERLITIEDTLEL 201 (344)
T ss_pred cCCeEEEECCCCccHHHHH-HHHHcccC----CCCCEEEECCCccc
Confidence 5789999999999999752 33333321 33466666666554
No 408
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.16 E-value=0.62 Score=44.65 Aligned_cols=53 Identities=17% Similarity=0.040 Sum_probs=33.7
Q ss_pred CCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHH
Q 013826 21 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 21 ~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 78 (436)
+..+.-+++.+++|+|||..++..+..... .+.+++|++-... ..|+......
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~----~g~kvlYvs~EEs-~~qi~~ra~r 143 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAK----NQMKVLYVSGEES-LQQIKMRAIR 143 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHh----cCCcEEEEECcCC-HHHHHHHHHH
Confidence 334567889999999999876554443322 2347899886533 4555544443
No 409
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.13 E-value=0.48 Score=40.87 Aligned_cols=61 Identities=13% Similarity=0.005 Sum_probs=36.7
Q ss_pred HHHhhh-CCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHH
Q 013826 13 VWQETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 13 a~~~~~-~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 78 (436)
.++.++ ..+..+..+++.+++|+|||..+...+.+.+. ++.++++++-. ....++.+....
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~----~g~~~~~is~e-~~~~~i~~~~~~ 69 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR----DGDPVIYVTTE-ESRESIIRQAAQ 69 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh----cCCeEEEEEcc-CCHHHHHHHHHH
Confidence 345554 34556788999999999999876554554443 23467777643 223444444333
No 410
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.10 E-value=0.12 Score=47.57 Aligned_cols=21 Identities=38% Similarity=0.464 Sum_probs=17.3
Q ss_pred CCCcEEEECCCCchHHHHhHH
Q 013826 23 FERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~ 43 (436)
.+.|+|+.+|||+|||+.+..
T Consensus 225 eKSNvLllGPtGsGKTllaqT 245 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQT 245 (564)
T ss_pred ecccEEEECCCCCchhHHHHH
Confidence 357899999999999986543
No 411
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.05 E-value=0.51 Score=40.55 Aligned_cols=61 Identities=15% Similarity=0.050 Sum_probs=39.4
Q ss_pred HHhhhC-CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 14 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 14 ~~~~~~-~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
+++++. .+..+..+++.+++|+|||..++..+...+. .+.+++|++-... ..++.+.+..+
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~----~g~~~~y~s~e~~-~~~l~~~~~~~ 66 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLK----NGEKAMYISLEER-EERILGYAKSK 66 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----CCCeEEEEECCCC-HHHHHHHHHHc
Confidence 344443 3445677899999999999876665555443 3446888876543 55666666554
No 412
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=91.99 E-value=0.59 Score=45.72 Aligned_cols=73 Identities=18% Similarity=0.396 Sum_probs=57.4
Q ss_pred EEEEcCCchhHHHHHHHHhhhccc--ceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-----Ccccc-cCCCCCCe
Q 013826 290 CIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRG-MDVEGVNN 361 (436)
Q Consensus 290 ~lvf~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-----~~~~G-idi~~~~~ 361 (436)
+||.+||++.|.++++.+..++.. .+.+..+.|+++..... ..++.| .+|||+|+ .+..+ +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHH---HHHhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 999999999999999999887643 47788899998775544 555556 99999995 45566 88888888
Q ss_pred EEEec
Q 013826 362 VVNYD 366 (436)
Q Consensus 362 vi~~~ 366 (436)
+|+-.
T Consensus 178 lVlDE 182 (513)
T COG0513 178 LVLDE 182 (513)
T ss_pred EEecc
Confidence 88643
No 413
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.78 E-value=0.27 Score=44.95 Aligned_cols=16 Identities=38% Similarity=0.756 Sum_probs=14.5
Q ss_pred CcEEEECCCCchHHHH
Q 013826 25 RDLCINSPTGSGKTLS 40 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~ 40 (436)
.|+++.+|+|+|||..
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 5899999999999975
No 414
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.77 E-value=0.59 Score=48.65 Aligned_cols=36 Identities=17% Similarity=0.065 Sum_probs=23.8
Q ss_pred hHHHHHhhhCCCC--CCCcEEEECCCCchHHHHhHHHH
Q 013826 10 QVAVWQETIGPGL--FERDLCINSPTGSGKTLSYALPI 45 (436)
Q Consensus 10 Q~~a~~~~~~~~~--~~~~~i~~~~tGsGKT~~~~~~~ 45 (436)
|.+.+..++.-+. ..++.++.+|+|+|||.++-..+
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La 229 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLA 229 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHH
Confidence 4455555554222 24789999999999998654433
No 415
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.77 E-value=0.4 Score=48.93 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=14.7
Q ss_pred cEEEECCCCchHHHHhH
Q 013826 26 DLCINSPTGSGKTLSYA 42 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~ 42 (436)
.+++.+|||+|||.++-
T Consensus 490 ~~Lf~GP~GvGKT~lAk 506 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57899999999998754
No 416
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=91.76 E-value=0.87 Score=41.30 Aligned_cols=38 Identities=16% Similarity=0.034 Sum_probs=24.5
Q ss_pred hhHHHHHhhhCCCCCC---CcEEEECCCCchHHHHhHHHHH
Q 013826 9 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~---~~~i~~~~tGsGKT~~~~~~~~ 46 (436)
+|.++.+.+...+..+ ...++.+|.|+||+..+...+.
T Consensus 8 Gq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~ 48 (314)
T PRK07399 8 GQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIE 48 (314)
T ss_pred CHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3555555554444344 4678999999999987544333
No 417
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.74 E-value=0.22 Score=45.44 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=16.2
Q ss_pred CCCcEEEECCCCchHHHH
Q 013826 23 FERDLCINSPTGSGKTLS 40 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~ 40 (436)
.+.+++++++||||||..
T Consensus 159 ~~~nili~G~tgSGKTTl 176 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTF 176 (332)
T ss_pred cCCcEEEECCCCCCHHHH
Confidence 578999999999999975
No 418
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=91.71 E-value=0.37 Score=51.89 Aligned_cols=60 Identities=20% Similarity=0.235 Sum_probs=48.7
Q ss_pred CCCcEEEECCCCchHHHHhHHHHHHHHHHh-hcCCccEEEEcCCHHHHHHHHHHHHHhhhh
Q 013826 23 FERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPTRDLALQVKDVFAAIAPA 82 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 82 (436)
.+++++|.|..|||||++...-++..+..+ +..-..+|++|-|++-+.++...+..-+..
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~ 75 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRLKE 75 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHHHH
Confidence 468999999999999999887788777775 245558999999999998888877765543
No 419
>PRK08506 replicative DNA helicase; Provisional
Probab=91.70 E-value=1.6 Score=42.26 Aligned_cols=59 Identities=12% Similarity=-0.112 Sum_probs=37.6
Q ss_pred HHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHH
Q 013826 14 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 77 (436)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 77 (436)
++.+...+..+.-+++.|.||.|||..++-.+..... .+.+++|++.-.. ..|+...+.
T Consensus 182 LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~----~g~~V~~fSlEMs-~~ql~~Rll 240 (472)
T PRK08506 182 LNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALN----QDKGVAFFSLEMP-AEQLMLRML 240 (472)
T ss_pred HHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHh----cCCcEEEEeCcCC-HHHHHHHHH
Confidence 3445555555667889999999999887666665442 3446888865533 444444443
No 420
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=91.70 E-value=1 Score=42.83 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=23.0
Q ss_pred cEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013826 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
.+++++++|+|||.++...+.. +.. .+.++++++
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~-L~~---~g~kV~lV~ 130 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARY-FKK---KGLKVGLVA 130 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHH-HHH---cCCeEEEec
Confidence 4778999999999887665543 333 233566664
No 421
>PRK08939 primosomal protein DnaI; Reviewed
Probab=91.69 E-value=0.36 Score=43.55 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=24.0
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
++++++.||+|+|||..+...+.+.+. .+..+.++.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~----~g~~v~~~~ 191 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAK----KGVSSTLLH 191 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH----cCCCEEEEE
Confidence 467899999999999876544444332 334566553
No 422
>PRK08006 replicative DNA helicase; Provisional
Probab=91.69 E-value=2.1 Score=41.24 Aligned_cols=48 Identities=8% Similarity=-0.129 Sum_probs=31.3
Q ss_pred HhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCC
Q 013826 15 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (436)
Q Consensus 15 ~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~ 65 (436)
+.+...+..++=+++.|.||.|||..++-.+...... .+.+++|.+.-
T Consensus 215 D~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~---~g~~V~~fSlE 262 (471)
T PRK08006 215 NKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAML---QDKPVLIFSLE 262 (471)
T ss_pred HHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---cCCeEEEEecc
Confidence 4444555556668899999999998766555544322 23467777644
No 423
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=91.61 E-value=0.51 Score=39.41 Aligned_cols=64 Identities=23% Similarity=0.107 Sum_probs=38.4
Q ss_pred hhhCCCC-CCCcEEEECCCCchHHHHhHHHHHHHHHHhh------cCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 16 ETIGPGL-FERDLCINSPTGSGKTLSYALPIVQTLSNRA------VRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 16 ~~~~~~~-~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~------~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
.++..+. .+.-+++.||+|+|||..++-.+........ ....+++++..... ..++.+.+....
T Consensus 23 ~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 23 WLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred eeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 3444444 4667899999999999887666665553211 13457888876655 556666666654
No 424
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=91.61 E-value=2 Score=41.18 Aligned_cols=60 Identities=8% Similarity=-0.155 Sum_probs=36.5
Q ss_pred HHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHH
Q 013826 14 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 77 (436)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 77 (436)
++.+...+..++-+++.|+||+|||..++-.+...... .+..+++++.... ..|+.+.+.
T Consensus 185 LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~---~g~~vl~~SlEm~-~~~i~~R~~ 244 (434)
T TIGR00665 185 LDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIK---EGKPVAFFSLEMS-AEQLAMRML 244 (434)
T ss_pred hHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHh---CCCeEEEEeCcCC-HHHHHHHHH
Confidence 44555455556678899999999998766555544432 2346888874433 333443333
No 425
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.50 E-value=0.61 Score=47.90 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=14.7
Q ss_pred cEEEECCCCchHHHHhHH
Q 013826 26 DLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~ 43 (436)
.+++.+|||+|||.++-.
T Consensus 486 ~~lf~Gp~GvGKT~lA~~ 503 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQ 503 (731)
T ss_pred eEEEECCCCccHHHHHHH
Confidence 478999999999986543
No 426
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.49 E-value=0.82 Score=46.75 Aligned_cols=24 Identities=17% Similarity=0.021 Sum_probs=18.6
Q ss_pred CCCcEEEECCCCchHHHHhHHHHH
Q 013826 23 FERDLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~~~~ 46 (436)
...+.++.+|+|+|||..+-..+.
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHH
Confidence 357899999999999987544433
No 427
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=91.41 E-value=0.39 Score=41.47 Aligned_cols=42 Identities=21% Similarity=0.419 Sum_probs=30.2
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHH
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 68 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 68 (436)
++++.|.|.||||||.+... +++.+.. ..+.+++++=|.-+=
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~-ll~~l~~--~~~~~~ii~D~~GEY 64 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKV-LLEELLK--KKGAKVIIFDPHGEY 64 (229)
T ss_pred cceEEEECCCCCCHHHHHHH-HHHHHHh--cCCCCEEEEcCCCcc
Confidence 58999999999999997555 4444442 245578888887653
No 428
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.37 E-value=0.59 Score=48.88 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=17.5
Q ss_pred CCcEEEECCCCchHHHHhHHHH
Q 013826 24 ERDLCINSPTGSGKTLSYALPI 45 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~ 45 (436)
.++.++.+|+|+|||.++-..+
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~la 215 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEGLA 215 (852)
T ss_pred CCceEEEcCCCCCHHHHHHHHH
Confidence 4789999999999998654433
No 429
>PRK05748 replicative DNA helicase; Provisional
Probab=91.33 E-value=2.3 Score=41.01 Aligned_cols=59 Identities=7% Similarity=-0.132 Sum_probs=36.0
Q ss_pred HHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHH
Q 013826 14 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 76 (436)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 76 (436)
++.+...+..+.-++|.|+||+|||..++-.+...... .+..++|++.... ..|+...+
T Consensus 193 LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~---~g~~v~~fSlEms-~~~l~~R~ 251 (448)
T PRK05748 193 LDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATK---TDKNVAIFSLEMG-AESLVMRM 251 (448)
T ss_pred HHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHh---CCCeEEEEeCCCC-HHHHHHHH
Confidence 34444555556778999999999998766555543322 2446777764433 33444444
No 430
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.32 E-value=0.84 Score=47.58 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=18.7
Q ss_pred CCcEEEECCCCchHHHHhHHHHHH
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQ 47 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~ 47 (436)
.++.++.+|+|+|||.++-..+..
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999876444443
No 431
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=91.31 E-value=0.51 Score=40.67 Aligned_cols=37 Identities=14% Similarity=0.060 Sum_probs=23.3
Q ss_pred CCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013826 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
.+..+++.+|+|+|||..+.....+... .+..++++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~----~~~~~~~i~ 77 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASY----GGRNARYLD 77 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh----CCCcEEEEe
Confidence 3467999999999999865443332222 233455554
No 432
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.30 E-value=0.31 Score=41.33 Aligned_cols=39 Identities=21% Similarity=0.148 Sum_probs=28.1
Q ss_pred CCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCC
Q 013826 23 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~ 65 (436)
.++-+.+.+|+|+|||..++..+..... .+.+++|+.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~----~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR----QGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh----CCCeEEEEECC
Confidence 4566889999999999887665555443 34468888764
No 433
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.29 E-value=0.93 Score=47.22 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=14.8
Q ss_pred cEEEECCCCchHHHHhHH
Q 013826 26 DLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~ 43 (436)
.+++.+|||+|||..+-.
T Consensus 598 ~~lf~Gp~GvGKT~lA~~ 615 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALA 615 (852)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999987543
No 434
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=91.22 E-value=1.2 Score=41.99 Aligned_cols=51 Identities=22% Similarity=0.132 Sum_probs=37.9
Q ss_pred EEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 28 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 28 i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
.+.+-.|||||.+.++-+.. ...+.++-++++.+-|+.|..++.....+++
T Consensus 180 rIrGLAGSGKT~~La~Kaa~--lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 180 RIRGLAGSGKTELLAHKAAE--LHSKNPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred hhhcccCCCchhHHHHHHHH--HhcCCCCceEEEEeehHHHHHHHHHHHHHHH
Confidence 56777899999864443333 3334477799999999999998887777765
No 435
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=91.15 E-value=0.35 Score=49.31 Aligned_cols=70 Identities=21% Similarity=0.221 Sum_probs=52.1
Q ss_pred CcccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 4 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 4 ~~~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
...+|-|.+++..-. +.+.+.+.+|+|+|||-.+.- ++..+.+.. ++.+++|++.+.+-..|.++.+.+.
T Consensus 737 v~ft~~qveai~sg~----qpgltmvvgppgtgktd~avq-il~~lyhn~-p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 737 VKFTPTQVEAILSGM----QPGLTMVVGPPGTGKTDVAVQ-ILSVLYHNS-PNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred hccCHHHHHHHHhcC----CCCceeeecCCCCCCcchhhh-hhhhhhhcC-CCcceEEEEecccchhHHHHHHHhc
Confidence 345677877755432 357788999999999987543 555555553 7889999999999999988887655
No 436
>PRK13531 regulatory ATPase RavA; Provisional
Probab=91.15 E-value=0.22 Score=47.35 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=27.5
Q ss_pred hhHHHHHhhhCCCCCCCcEEEECCCCchHHHHh
Q 013826 9 VQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~ 41 (436)
.|.++++.+...+..+.++++.+|+|+|||..+
T Consensus 24 gre~vI~lll~aalag~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 24 ERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 56 (498)
T ss_pred CcHHHHHHHHHHHccCCCEEEECCCChhHHHHH
Confidence 456667777777778999999999999999865
No 437
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.12 E-value=0.66 Score=45.06 Aligned_cols=64 Identities=11% Similarity=0.039 Sum_probs=41.8
Q ss_pred HHHhhhC-CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhh
Q 013826 13 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 80 (436)
Q Consensus 13 a~~~~~~-~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 80 (436)
-++.++. -+..+..+++.+++|+|||..++..+.+.+.+ .+.+++|++-. +-..++.+.+..+.
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~---~ge~~lyvs~e-E~~~~l~~~~~~~G 73 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH---FDEPGVFVTFE-ESPQDIIKNARSFG 73 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEEEEe-cCHHHHHHHHHHcC
Confidence 3455554 34557889999999999998866655554443 13468888743 44455666666653
No 438
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.07 E-value=0.23 Score=46.74 Aligned_cols=56 Identities=21% Similarity=0.207 Sum_probs=38.4
Q ss_pred cEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEec
Q 013826 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAV 91 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~ 91 (436)
++++.||||+|||...++|.+-. ....++++-|.-++...+....+.. |..|.++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~------~~~s~vv~D~Kge~~~~t~~~r~~~----G~~V~v~n 56 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT------WPGSVVVLDPKGENFELTSEHRRAL----GRKVFVFD 56 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc------CCCCEEEEccchhHHHHHHHHHHHc----CCeEEEEc
Confidence 47899999999998876654422 2246888899988887666555543 44444444
No 439
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=91.02 E-value=0.49 Score=40.45 Aligned_cols=47 Identities=19% Similarity=0.085 Sum_probs=31.7
Q ss_pred HHHhhhC-CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013826 13 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 13 a~~~~~~-~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
.++.++. -+..+.-+++.+++|+|||..++..+..... .+.+++|+.
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~----~g~~v~yi~ 54 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAG----QGKKVAYID 54 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCCeEEEEE
Confidence 3455554 3445666889999999999887666555432 344688874
No 440
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.00 E-value=0.35 Score=42.51 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=20.4
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHh
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQTLSNR 52 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~ 52 (436)
.=+++.+|||||||.+ +.++++.+...
T Consensus 126 GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 126 GLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred ceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 3477899999999976 45577776554
No 441
>PRK09354 recA recombinase A; Provisional
Probab=90.97 E-value=0.73 Score=42.12 Aligned_cols=54 Identities=20% Similarity=0.076 Sum_probs=37.0
Q ss_pred HHHhhhC--CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHH
Q 013826 13 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 70 (436)
Q Consensus 13 a~~~~~~--~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~ 70 (436)
.++.++. -+-.+.-+.+.+|+|+|||..++..+..... .+.+++|+.....+-.
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~----~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK----AGGTAAFIDAEHALDP 102 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCcEEEECCccchHH
Confidence 3445544 3444566789999999999987766665543 3457899987766654
No 442
>PRK10436 hypothetical protein; Provisional
Probab=90.96 E-value=0.43 Score=45.66 Aligned_cols=40 Identities=33% Similarity=0.527 Sum_probs=26.0
Q ss_pred cchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHH
Q 013826 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 49 (436)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~ 49 (436)
.+.|.+.+..++.. .+.-+++.+|||||||.+. ..++..+
T Consensus 203 ~~~~~~~l~~~~~~--~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 203 TPAQLAQFRQALQQ--PQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CHHHHHHHHHHHHh--cCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 45566666665531 2456889999999999863 3444443
No 443
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.90 E-value=0.35 Score=47.67 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=75.4
Q ss_pred HHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEE-cCCHHHHHHHHHHHHHhhhhhCceEEEec
Q 013826 13 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV-LPTRDLALQVKDVFAAIAPAVGLSVGLAV 91 (436)
Q Consensus 13 a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil-~P~~~l~~q~~~~~~~~~~~~~~~v~~~~ 91 (436)
.++.+--.+..|+.+.+++|.|+|||.++ .++..++.. ..+++++= +|-+++--++.+ +.....+-......
T Consensus 483 Vlk~lsfti~pGe~vALVGPSGsGKSTia--sLL~rfY~P--tsG~IllDG~~i~~~~~~~lr---~~Ig~V~QEPvLFs 555 (716)
T KOG0058|consen 483 VLKNLSFTIRPGEVVALVGPSGSGKSTIA--SLLLRFYDP--TSGRILLDGVPISDINHKYLR---RKIGLVGQEPVLFS 555 (716)
T ss_pred hhcCceeeeCCCCEEEEECCCCCCHHHHH--HHHHHhcCC--CCCeEEECCeehhhcCHHHHH---HHeeeeeccceeec
Confidence 33444334556889999999999999764 455556653 22333332 455555433333 32222222222222
Q ss_pred cCcchhHHHHHhhcc----ccccccccCCchhHHHhhccCCcEEEeCchhHHHHhhcCC----CcccCCccEEEEehhhH
Q 013826 92 GQSSIADEISELIKR----PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR----GFTLEHLCYLVVDETDR 163 (436)
Q Consensus 92 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~l~~~~----~~~~~~~~~iIiDE~h~ 163 (436)
+.. .+.+.-.... .........+.++-....+.+.+=.|+..+..+.=-.++. ...+++..++|+|||=.
T Consensus 556 ~sI--~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATS 633 (716)
T KOG0058|consen 556 GSI--RENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATS 633 (716)
T ss_pred ccH--HHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhh
Confidence 211 1110000000 0000011112233333444444555554432211000000 01266788999999999
Q ss_pred HhhHhHhhhHHHHHhhcc
Q 013826 164 LLREAYQAWLPTVLQLTR 181 (436)
Q Consensus 164 ~~~~~~~~~~~~i~~~~~ 181 (436)
.+|......++..+....
T Consensus 634 ALDaeSE~lVq~aL~~~~ 651 (716)
T KOG0058|consen 634 ALDAESEYLVQEALDRLM 651 (716)
T ss_pred hcchhhHHHHHHHHHHhh
Confidence 999887777777776543
No 444
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=90.86 E-value=0.52 Score=40.56 Aligned_cols=49 Identities=20% Similarity=0.119 Sum_probs=32.8
Q ss_pred HHHhhhC-CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCC
Q 013826 13 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (436)
Q Consensus 13 a~~~~~~-~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~ 65 (436)
.++.++. .+..+.-+.+.+++|+|||..++..+.+.+. .+.+++|+.-.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~----~~~~v~yi~~e 60 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAK----NGKKVIYIDTE 60 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEECC
Confidence 3455553 3344567889999999999887666655543 23467777644
No 445
>PRK14701 reverse gyrase; Provisional
Probab=90.81 E-value=0.91 Score=50.46 Aligned_cols=64 Identities=17% Similarity=0.367 Sum_probs=55.1
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcc---cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCC
Q 013826 286 GEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 349 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~ 349 (436)
.+.++||.+|+++.+.++++.++.... .+..+..+||+++..++.+.++.+.+|+.+|||+|+.
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 456899999999999999999987542 2467888999999999888999999999999999964
No 446
>CHL00181 cbbX CbbX; Provisional
Probab=90.64 E-value=0.53 Score=42.12 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=18.5
Q ss_pred CCcEEEECCCCchHHHHhHHHHHH
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQ 47 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~ 47 (436)
+.++++.+|+|+|||.++-..+..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999986655443
No 447
>PRK08760 replicative DNA helicase; Provisional
Probab=90.60 E-value=2.2 Score=41.22 Aligned_cols=61 Identities=10% Similarity=-0.152 Sum_probs=37.1
Q ss_pred HhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 15 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 15 ~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
+.+...+..+.-++|.|.||.|||..++-.+...... .+.+++|.+.-.. ..|+...+...
T Consensus 220 D~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~---~g~~V~~fSlEMs-~~ql~~Rl~a~ 280 (476)
T PRK08760 220 DAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIK---SKKGVAVFSMEMS-ASQLAMRLISS 280 (476)
T ss_pred HHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHh---cCCceEEEeccCC-HHHHHHHHHHh
Confidence 4444445556668899999999998766555544322 2335777765443 34455544433
No 448
>PHA00350 putative assembly protein
Probab=90.49 E-value=0.77 Score=42.73 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=16.4
Q ss_pred EEEECCCCchHHHHhHH-HHHHHH
Q 013826 27 LCINSPTGSGKTLSYAL-PIVQTL 49 (436)
Q Consensus 27 ~i~~~~tGsGKT~~~~~-~~~~~~ 49 (436)
.++.+.+|||||+.++- .++..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~pal 27 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPAL 27 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHH
Confidence 46899999999987654 244443
No 449
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=90.46 E-value=2.3 Score=37.71 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=23.3
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
+-+++.+|+|+|||.++.-.+... .. .+.+++++.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l-~~---~g~~V~li~ 107 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKL-KK---QGKSVLLAA 107 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-Hh---cCCEEEEEe
Confidence 346688999999998876655433 22 334676665
No 450
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=90.46 E-value=2.8 Score=39.79 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=22.8
Q ss_pred cEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013826 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
-+++++++|+|||.++.-.+...... .+.+++++.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~---~g~kV~lV~ 135 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKK---QGKKVLLVA 135 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh---CCCeEEEEe
Confidence 36789999999999876655542212 233566554
No 451
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.38 E-value=0.43 Score=44.08 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=19.6
Q ss_pred CCCcEEEECCCCchHHHHhHHHHHHHHH
Q 013826 23 FERDLCINSPTGSGKTLSYALPIVQTLS 50 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~~~~~~~~ 50 (436)
.+..+++++|||||||.+. .+++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 4577999999999999753 44444443
No 452
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=90.38 E-value=3.7 Score=40.78 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=41.1
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhh
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 81 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 81 (436)
.+..++..|==.|||.... +++..+... .++.++++.+|.+..+...++++...+.
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s-~~Gi~IgytAH~~~ts~~vF~eI~~~le 309 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALAT-FRGIKIGYTAHIRKATEPVFEEIGARLR 309 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHh-CCCCEEEEEcCcHHHHHHHHHHHHHHHh
Confidence 3556777788899998644 344333322 2577899999999999999999887765
No 453
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=90.37 E-value=0.14 Score=42.69 Aligned_cols=31 Identities=23% Similarity=0.182 Sum_probs=18.0
Q ss_pred hHHHHHhhhCCCCCCCcEEEECCCCchHHHH
Q 013826 10 QVAVWQETIGPGLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 10 Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~ 40 (436)
|.++-..+.-+...+.++++.+|+|+|||..
T Consensus 8 Qe~aKrAL~iAAaG~h~lLl~GppGtGKTml 38 (206)
T PF01078_consen 8 QEEAKRALEIAAAGGHHLLLIGPPGTGKTML 38 (206)
T ss_dssp THHHHHHHHHHHHCC--EEEES-CCCTHHHH
T ss_pred cHHHHHHHHHHHcCCCCeEEECCCCCCHHHH
Confidence 4444333332333568999999999999975
No 454
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=90.32 E-value=0.41 Score=46.46 Aligned_cols=49 Identities=27% Similarity=0.338 Sum_probs=36.0
Q ss_pred CcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
.++++.||||||||..+++|.+ +.. + ..+++.-|--++...+....+..
T Consensus 45 ~h~lvig~tgSGKt~~~viP~l--l~~---~-~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNL--LNY---P-GSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHH--Hhc---c-CCEEEEECCCcHHHHHHHHHHHC
Confidence 3699999999999998877754 221 2 26888889988877666555554
No 455
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.16 E-value=2.2 Score=37.66 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=17.8
Q ss_pred CcEEEECCCCchHHHHhHHHHHH
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQ 47 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~ 47 (436)
+.+++.+++|+|||..+...+..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~ 98 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQ 98 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 57889999999999876554443
No 456
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.12 E-value=0.48 Score=39.82 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=21.2
Q ss_pred cEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcC
Q 013826 26 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P 64 (436)
-+++.+|||||||.+. ..++..+... .+.+++.+-.
T Consensus 3 lilI~GptGSGKTTll-~~ll~~~~~~--~~~~i~t~e~ 38 (198)
T cd01131 3 LVLVTGPTGSGKSTTL-AAMIDYINKN--KTHHILTIED 38 (198)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhhhc--CCcEEEEEcC
Confidence 3689999999999864 3334333321 2334555543
No 457
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=89.99 E-value=1.4 Score=45.70 Aligned_cols=18 Identities=39% Similarity=0.527 Sum_probs=15.2
Q ss_pred CCcEEEECCCCchHHHHh
Q 013826 24 ERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~ 41 (436)
+..+++.+|+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456899999999999764
No 458
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=89.98 E-value=2.5 Score=34.53 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=21.1
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013826 27 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 27 ~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
+++.+++|+|||..+...+.... . .+.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~-~---~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLK-K---KGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-H---CCCcEEEEE
Confidence 57899999999987655444322 2 233565554
No 459
>PHA02244 ATPase-like protein
Probab=89.86 E-value=0.42 Score=43.78 Aligned_cols=25 Identities=16% Similarity=0.020 Sum_probs=19.3
Q ss_pred hhCCCCCCCcEEEECCCCchHHHHh
Q 013826 17 TIGPGLFERDLCINSPTGSGKTLSY 41 (436)
Q Consensus 17 ~~~~~~~~~~~i~~~~tGsGKT~~~ 41 (436)
+...+..+.++++.+|||+|||..+
T Consensus 112 i~r~l~~~~PVLL~GppGtGKTtLA 136 (383)
T PHA02244 112 IAKIVNANIPVFLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHhcCCCEEEECCCCCCHHHHH
Confidence 3333446789999999999999764
No 460
>PRK10865 protein disaggregation chaperone; Provisional
Probab=89.86 E-value=0.64 Score=48.50 Aligned_cols=18 Identities=33% Similarity=0.379 Sum_probs=15.1
Q ss_pred cEEEECCCCchHHHHhHH
Q 013826 26 DLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~ 43 (436)
.+++.+|||+|||.++-.
T Consensus 600 ~~Lf~Gp~G~GKT~lA~a 617 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKA 617 (857)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 478999999999987644
No 461
>PRK10867 signal recognition particle protein; Provisional
Probab=89.85 E-value=4.2 Score=38.65 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=22.6
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc
Q 013826 27 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 63 (436)
Q Consensus 27 ~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~ 63 (436)
+++++++|+|||.++.-.+...... .+.++++++
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~---~G~kV~lV~ 136 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKK---KKKKVLLVA 136 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh---cCCcEEEEE
Confidence 6789999999999876655543322 134566654
No 462
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=89.85 E-value=0.75 Score=45.61 Aligned_cols=41 Identities=24% Similarity=0.144 Sum_probs=30.8
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHH
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 68 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 68 (436)
..+.++.++||+|||..+...+.+.+.. +..++++=|....
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~----g~~vi~fDpkgD~ 220 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRR----GDVVIVFDPKGDA 220 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCCCCH
Confidence 5789999999999999876666655543 3468888887754
No 463
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=89.78 E-value=2.7 Score=38.39 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=18.2
Q ss_pred CCc-EEEECCCCchHHHHhHHHHHH
Q 013826 24 ERD-LCINSPTGSGKTLSYALPIVQ 47 (436)
Q Consensus 24 ~~~-~i~~~~tGsGKT~~~~~~~~~ 47 (436)
..+ .++.+|+|+|||.++...+..
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~ 47 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKE 47 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHH
Confidence 456 899999999999876554443
No 464
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=89.75 E-value=0.58 Score=49.00 Aligned_cols=101 Identities=18% Similarity=0.105 Sum_probs=69.8
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcccceeEEEeccccchHHHHHHHHHHhcCCeeEEEecCCcccccCCCCCCeEEEe
Q 013826 286 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 365 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~Gidi~~~~~vi~~ 365 (436)
...++|+|+.-......+...+.-.+ +... ..++ .....+.+..|++ ---+++-++..+.|+|+-++.+|++.
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~---I~~~-~~~~--t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ 1292 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNL---IKKQ-LDGE--TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLV 1292 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhh---hHhh-hccC--Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhhee
Confidence 46789999776555444444443221 1111 1111 3335567777876 22345777888999999999999999
Q ss_pred cCCCChhHHHHHhhhcccCCCCceEEEE
Q 013826 366 DKPAYIKTYIHRAGRTARAGQLGRCFTL 393 (436)
Q Consensus 366 ~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 393 (436)
.+..++..-.|.+||+.|.|+...+++.
T Consensus 1293 ePiLN~~~E~QAigRvhRiGQ~~pT~V~ 1320 (1394)
T KOG0298|consen 1293 EPILNPGDEAQAIGRVHRIGQKRPTFVH 1320 (1394)
T ss_pred ccccCchHHHhhhhhhhhcccccchhhh
Confidence 9999999999999999999988655554
No 465
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=89.73 E-value=0.38 Score=47.64 Aligned_cols=58 Identities=17% Similarity=0.050 Sum_probs=42.5
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEec
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAV 91 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~ 91 (436)
.+++++.||||||||..+.+|.+-.. +..++|+-|--++...++...++. |..|..+.
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~~------~~S~VV~DpKGEl~~~Ta~~R~~~----G~~V~vfd 215 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLFW------EDSVVVHDIKLENYELTSGWREKQ----GQKVFVWE 215 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHhC------CCCEEEEeCcHHHHHHHHHHHHHC----CCeEEEEe
Confidence 36899999999999998887766432 236889999999988777666554 55554443
No 466
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=89.72 E-value=0.71 Score=37.57 Aligned_cols=46 Identities=9% Similarity=-0.005 Sum_probs=31.7
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 27 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 27 ~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
+++.+++|||||..+...+.. .+.+++|+.-....-.++.+.+..+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-------~~~~~~y~at~~~~d~em~~rI~~H 47 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-------LGGPVTYIATAEAFDDEMAERIARH 47 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-------cCCCeEEEEccCcCCHHHHHHHHHH
Confidence 578999999999875543332 2347889987777766666665543
No 467
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=89.70 E-value=3.6 Score=38.33 Aligned_cols=42 Identities=29% Similarity=0.215 Sum_probs=23.7
Q ss_pred EEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHH
Q 013826 28 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (436)
Q Consensus 28 i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q 71 (436)
++.++.|+|||......++..+...+ +...+++. ++..-+.+
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~-~~~~vi~~-~~~~~~~~ 42 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP-PGRRVIIA-STYRQARD 42 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS-S--EEEEE-ESSHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC-CCcEEEEe-cCHHHHHH
Confidence 47889999999987766666555432 12345555 66555544
No 468
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.68 E-value=3.7 Score=36.93 Aligned_cols=56 Identities=21% Similarity=0.185 Sum_probs=33.1
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEc-CC-HHHHHHHHHHHHHhhhhhCceEEE
Q 013826 27 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL-PT-RDLALQVKDVFAAIAPAVGLSVGL 89 (436)
Q Consensus 27 ~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~-P~-~~l~~q~~~~~~~~~~~~~~~v~~ 89 (436)
+++++..|+|||.+..-.+.. +.. .+.++++.+ -| |+=+ .+.+..|....|+.+..
T Consensus 142 il~vGVNG~GKTTTIaKLA~~-l~~---~g~~VllaA~DTFRAaA---iEQL~~w~er~gv~vI~ 199 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKY-LKQ---QGKSVLLAAGDTFRAAA---IEQLEVWGERLGVPVIS 199 (340)
T ss_pred EEEEecCCCchHhHHHHHHHH-HHH---CCCeEEEEecchHHHHH---HHHHHHHHHHhCCeEEc
Confidence 567999999999886554443 333 344566654 33 2322 33455555555776655
No 469
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=89.57 E-value=0.56 Score=41.96 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=16.5
Q ss_pred CcEEEECCCCchHHHHhHHH
Q 013826 25 RDLCINSPTGSGKTLSYALP 44 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~ 44 (436)
.++++.+|+|+|||.++-..
T Consensus 59 ~~vll~G~pGTGKT~lA~~i 78 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRM 78 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 47999999999999876443
No 470
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=89.37 E-value=0.36 Score=42.91 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=27.3
Q ss_pred CCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHH
Q 013826 22 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 68 (436)
Q Consensus 22 ~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 68 (436)
..+.++++.++||||||... ..++..+.. ...+++.+-.+.++
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~---~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPP---EDERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHT---TTSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHH-HHHhhhccc---cccceEEeccccce
Confidence 34688999999999999753 334444332 22466666555454
No 471
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=89.36 E-value=0.62 Score=38.46 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=22.7
Q ss_pred cchhHHHHHhhhCCC--CCCCcEEEECCCCchHHHHhHHHHHHHHHH
Q 013826 7 FPVQVAVWQETIGPG--LFERDLCINSPTGSGKTLSYALPIVQTLSN 51 (436)
Q Consensus 7 ~~~Q~~a~~~~~~~~--~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~ 51 (436)
|..|.+.+...+... ..++.+++.|+.|+|||...-- +.+.+..
T Consensus 5 R~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~-~~~~~~~ 50 (185)
T PF13191_consen 5 REEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRA-LLDRLAE 50 (185)
T ss_dssp -HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHH-HHHHHHh
Confidence 445666666666311 2346799999999999986332 4444443
No 472
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=89.32 E-value=0.37 Score=45.40 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=22.7
Q ss_pred HHhhhCCCCCCCcEEEECCCCchHHHHhHH
Q 013826 14 WQETIGPGLFERDLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~ 43 (436)
++.++..+..++++++.+|+|+|||.++-.
T Consensus 184 le~l~~~L~~~~~iil~GppGtGKT~lA~~ 213 (459)
T PRK11331 184 IETILKRLTIKKNIILQGPPGVGKTFVARR 213 (459)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHHHHH
Confidence 344455555689999999999999987543
No 473
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=89.28 E-value=3.4 Score=41.56 Aligned_cols=77 Identities=18% Similarity=0.315 Sum_probs=53.5
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhcc--cceeEEEeccccchHHHHHHHHHHhcCCeeEEEecC-----Cccc-ccCCC
Q 013826 286 GEEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMDVE 357 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-----~~~~-Gidi~ 357 (436)
...++||.+|+++.+.++++.++.+.. .+..+..++|+.+...... .+. ...+|+|+|+ .+.. .+++.
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~---~l~-~~~~IVVgTPgrl~d~l~r~~l~l~ 148 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR---ALR-QGPQIVVGTPGRLLDHLKRGTLDLS 148 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHH---Hhc-CCCCEEEECHHHHHHHHHcCCcchh
Confidence 345799999999999999988876532 2467778888876544332 333 4578999994 2233 36787
Q ss_pred CCCeEEEec
Q 013826 358 GVNNVVNYD 366 (436)
Q Consensus 358 ~~~~vi~~~ 366 (436)
++..+|+-.
T Consensus 149 ~l~~lVlDE 157 (629)
T PRK11634 149 KLSGLVLDE 157 (629)
T ss_pred hceEEEecc
Confidence 888877644
No 474
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=89.27 E-value=0.92 Score=45.42 Aligned_cols=52 Identities=23% Similarity=0.195 Sum_probs=34.7
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHH--HHHHHHHHHHHh
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD--LALQVKDVFAAI 79 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~--l~~q~~~~~~~~ 79 (436)
..++++.++||+|||..+...+.+.+.. +..++++=|--. +.......++..
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~----g~~viv~DpKgD~~l~~~~~~~~~~~ 229 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRR----GDVVIVIDPKGDADLKRRMRAEAKRA 229 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCCCchHHHHHHHHHHHHh
Confidence 5789999999999998765555554443 335777777755 555445444444
No 475
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.22 E-value=2.4 Score=35.52 Aligned_cols=37 Identities=22% Similarity=0.151 Sum_probs=27.3
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcC
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 64 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P 64 (436)
+.=+++.++.|+|||...+..++-.+.++ .++.+++-
T Consensus 28 GsL~lIEGd~~tGKSvLsqr~~YG~L~~g----~~v~yvsT 64 (235)
T COG2874 28 GSLILIEGDNGTGKSVLSQRFAYGFLMNG----YRVTYVST 64 (235)
T ss_pred CeEEEEECCCCccHHHHHHHHHHHHHhCC----ceEEEEEe
Confidence 45578999999999998777777666554 35666653
No 476
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=89.19 E-value=0.54 Score=39.76 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=18.1
Q ss_pred CCCcEEEECCCCchHHHHhHHHHHHHHH
Q 013826 23 FERDLCINSPTGSGKTLSYALPIVQTLS 50 (436)
Q Consensus 23 ~~~~~i~~~~tGsGKT~~~~~~~~~~~~ 50 (436)
...++++.++||+|||......+...+.
T Consensus 37 ~~~h~li~G~tgsGKS~~l~~ll~~l~~ 64 (205)
T PF01580_consen 37 KNPHLLIAGATGSGKSTLLRTLLLSLAL 64 (205)
T ss_dssp GS-SEEEE--TTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEcCCCCCccHHHHHHHHHHHH
Confidence 3568999999999999875554444443
No 477
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=89.14 E-value=0.74 Score=44.53 Aligned_cols=40 Identities=25% Similarity=0.355 Sum_probs=25.5
Q ss_pred cchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHH
Q 013826 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 49 (436)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~ 49 (436)
.+.|.+.+..++.. .+.-+++.+|||||||.+. ..++..+
T Consensus 227 ~~~~~~~l~~~~~~--~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 227 SPELLSRFERLIRR--PHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CHHHHHHHHHHHhc--CCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 56666666666541 1234789999999999863 3344433
No 478
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=89.14 E-value=0.61 Score=44.23 Aligned_cols=44 Identities=25% Similarity=0.340 Sum_probs=31.2
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHH
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 71 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q 71 (436)
.+++++.++||+|||.. +..++..+.. .+.+++|+=|.-+....
T Consensus 42 ~~h~~i~g~tGsGKt~~-i~~l~~~~~~---~~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQ-IRELLASIRA---RGDRAIIYDPNGGFVSK 85 (410)
T ss_pred hccEEEEcCCCCCHHHH-HHHHHHHHHh---cCCCEEEEeCCcchhHh
Confidence 47899999999999985 3334444433 34478888888776543
No 479
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=89.13 E-value=0.68 Score=40.64 Aligned_cols=40 Identities=18% Similarity=0.013 Sum_probs=26.2
Q ss_pred EEECCCCchHHHHhHHHHHHHHHHh--hcCCccEEEEcCCHH
Q 013826 28 CINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPTRD 67 (436)
Q Consensus 28 i~~~~tGsGKT~~~~~~~~~~~~~~--~~~~~~~lil~P~~~ 67 (436)
=++++.|+|||..++..+....... +..+.+++|+.-...
T Consensus 42 Ei~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~ 83 (256)
T PF08423_consen 42 EIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGT 83 (256)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSS
T ss_pred EEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCC
Confidence 3899999999988766555543321 123557999864443
No 480
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=89.09 E-value=0.7 Score=45.76 Aligned_cols=40 Identities=35% Similarity=0.441 Sum_probs=26.0
Q ss_pred cchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHH
Q 013826 7 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 49 (436)
Q Consensus 7 ~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~ 49 (436)
.+.|.+.+..++.. .+.-+++.+|||||||.+. ..++..+
T Consensus 301 ~~~~~~~l~~~~~~--~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 301 EPDQKALFLEAIHK--PQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred CHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 45566666665531 2456789999999999763 3445444
No 481
>PRK06321 replicative DNA helicase; Provisional
Probab=88.99 E-value=5.2 Score=38.64 Aligned_cols=49 Identities=10% Similarity=-0.130 Sum_probs=30.1
Q ss_pred HHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCC
Q 013826 14 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (436)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~ 65 (436)
++.+...+..+.=+++.|.||.|||..++-.+...... .+..++|.+.-
T Consensus 216 LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~---~g~~v~~fSLE 264 (472)
T PRK06321 216 LDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQ---NRLPVGIFSLE 264 (472)
T ss_pred HHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHh---cCCeEEEEecc
Confidence 34444445455667889999999998765544433222 23357777633
No 482
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=88.98 E-value=0.43 Score=42.69 Aligned_cols=22 Identities=23% Similarity=0.117 Sum_probs=16.9
Q ss_pred CCcEEEECCCCchHHHHhHHHH
Q 013826 24 ERDLCINSPTGSGKTLSYALPI 45 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~ 45 (436)
++-++|.+|||+|||..++-.+
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA 25 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFP 25 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHH
Confidence 3457899999999998765443
No 483
>PRK07004 replicative DNA helicase; Provisional
Probab=88.97 E-value=3.1 Score=40.05 Aligned_cols=48 Identities=10% Similarity=-0.172 Sum_probs=29.7
Q ss_pred HhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCC
Q 013826 15 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 65 (436)
Q Consensus 15 ~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~ 65 (436)
+.+...+..++-+++.|.||+|||..++-.+...... .+..+++.+.-
T Consensus 204 D~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~---~~~~v~~fSlE 251 (460)
T PRK07004 204 DRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVE---YGLPVAVFSME 251 (460)
T ss_pred cccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHH---cCCeEEEEeCC
Confidence 3444444455668899999999998765544443322 23457777633
No 484
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=88.93 E-value=1.2 Score=43.80 Aligned_cols=64 Identities=14% Similarity=0.040 Sum_probs=40.6
Q ss_pred HHHHhhhC-CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 12 AVWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 12 ~a~~~~~~-~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
..++.++. .+-.+.-+++.+++|+|||..++-.+.+.+.+ .+.+++|++=.. -..|+.+.+..+
T Consensus 18 ~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~---~ge~~lyis~ee-~~~~i~~~~~~~ 82 (509)
T PRK09302 18 EGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKR---FDEPGVFVTFEE-SPEDIIRNVASF 82 (509)
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---cCCCEEEEEccC-CHHHHHHHHHHc
Confidence 34556653 45557788999999999998766655555543 144688886332 344455555554
No 485
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=88.93 E-value=3.5 Score=37.10 Aligned_cols=95 Identities=16% Similarity=0.254 Sum_probs=62.5
Q ss_pred HHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhh
Q 013826 45 IVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 124 (436)
Q Consensus 45 ~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (436)
+..++...-..+..+++.+|+....+|.++.++.-++. ..+..+++......+..+.++.
T Consensus 294 l~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~--~~i~~Vhs~d~~R~EkV~~fR~------------------ 353 (441)
T COG4098 294 LKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPK--ETIASVHSEDQHRKEKVEAFRD------------------ 353 (441)
T ss_pred HHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCc--cceeeeeccCccHHHHHHHHHc------------------
Confidence 33344443334557999999999999999998665543 4456666666655544433322
Q ss_pred ccCCcEEEeCchhHHHHhhcCCCcccCCccEEEEehhhHHhhH
Q 013826 125 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 167 (436)
Q Consensus 125 ~~~~~Iii~T~~~l~~~l~~~~~~~~~~~~~iIiDE~h~~~~~ 167 (436)
...+++|+| ..|++ ++.+.++++.|++--|.+...
T Consensus 354 -G~~~lLiTT-----TILER--GVTfp~vdV~Vlgaeh~vfTe 388 (441)
T COG4098 354 -GKITLLITT-----TILER--GVTFPNVDVFVLGAEHRVFTE 388 (441)
T ss_pred -CceEEEEEe-----ehhhc--ccccccceEEEecCCcccccH
Confidence 234899999 34555 466889999999988866433
No 486
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=88.90 E-value=0.45 Score=36.67 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=13.9
Q ss_pred EEEECCCCchHHHHhHH
Q 013826 27 LCINSPTGSGKTLSYAL 43 (436)
Q Consensus 27 ~i~~~~tGsGKT~~~~~ 43 (436)
+++.+|+|+|||..+-.
T Consensus 1 ill~G~~G~GKT~l~~~ 17 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARA 17 (132)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred CEEECcCCCCeeHHHHH
Confidence 57999999999986433
No 487
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=88.86 E-value=0.46 Score=39.63 Aligned_cols=20 Identities=35% Similarity=0.320 Sum_probs=14.6
Q ss_pred EEEECCCCchHHHHhHHHHH
Q 013826 27 LCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 27 ~i~~~~tGsGKT~~~~~~~~ 46 (436)
.++.+|||+|||..++..+.
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~ 23 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQ 23 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHH
Confidence 47899999999987655444
No 488
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=88.84 E-value=1.4 Score=47.62 Aligned_cols=81 Identities=10% Similarity=0.288 Sum_probs=59.1
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhhccc-ce---eEEEeccccchHHHHHHHHHHhcCCeeEEEecCC-cccccC-CC-C
Q 013826 286 GEEKCIVFTSSVESTHRLCTLLNHFGEL-RI---KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMD-VE-G 358 (436)
Q Consensus 286 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~-~~---~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~-~~~Gid-i~-~ 358 (436)
.+.++||.+|+++.+.++++.+++.... +. .+..+||+++..++...++.+.+|..+|||+|+. +...++ +. .
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~ 199 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPK 199 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCC
Confidence 3678999999999999999998876421 12 2456899999998888899999999999999963 221111 12 5
Q ss_pred CCeEEEec
Q 013826 359 VNNVVNYD 366 (436)
Q Consensus 359 ~~~vi~~~ 366 (436)
++++|+-.
T Consensus 200 ~~~iVvDE 207 (1171)
T TIGR01054 200 FDFIFVDD 207 (1171)
T ss_pred CCEEEEeC
Confidence 66666543
No 489
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.53 E-value=3.7 Score=39.55 Aligned_cols=74 Identities=18% Similarity=0.204 Sum_probs=54.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhhhhhCceEEEeccCcchhHHHHHhhccccccccccCCchhHHHhh-ccCCcEEEe
Q 013826 55 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVA 133 (436)
Q Consensus 55 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~ 133 (436)
...++||.|-|+.-|+++.+.++.. +++...++|+.+-.... ..++.. ..++.|+|+
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~------------------~~L~~FreG~~~vLVA 397 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERD------------------WVLKGFREGKSPVLVA 397 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHH------------------HHHHhcccCCcceEEE
Confidence 5568999999999999988888865 57888999998755442 222333 234799999
Q ss_pred CchhHHHHhhcCCCcccCCccEEE
Q 013826 134 TPGRLMDHINATRGFTLEHLCYLV 157 (436)
Q Consensus 134 T~~~l~~~l~~~~~~~~~~~~~iI 157 (436)
|. -...++++.++++||
T Consensus 398 Td-------VAaRGLDi~dV~lVI 414 (519)
T KOG0331|consen 398 TD-------VAARGLDVPDVDLVI 414 (519)
T ss_pred cc-------cccccCCCccccEEE
Confidence 93 122457788999988
No 490
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=88.51 E-value=0.42 Score=37.44 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=14.7
Q ss_pred cEEEECCCCchHHHHhHH
Q 013826 26 DLCINSPTGSGKTLSYAL 43 (436)
Q Consensus 26 ~~i~~~~tGsGKT~~~~~ 43 (436)
++++.+|+|+|||..+-.
T Consensus 1 ~vlL~G~~G~GKt~l~~~ 18 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARE 18 (139)
T ss_dssp EEEEEESSSSSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 478999999999986433
No 491
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=88.51 E-value=0.38 Score=36.59 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=13.9
Q ss_pred EEEECCCCchHHHHhHH
Q 013826 27 LCINSPTGSGKTLSYAL 43 (436)
Q Consensus 27 ~i~~~~tGsGKT~~~~~ 43 (436)
++|.+++|+|||..+-.
T Consensus 2 I~I~G~~gsGKST~a~~ 18 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKE 18 (121)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999986433
No 492
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=88.43 E-value=0.79 Score=42.54 Aligned_cols=26 Identities=31% Similarity=0.151 Sum_probs=18.7
Q ss_pred CCcEEEECCCCchHHHHhHHHHHHHHH
Q 013826 24 ERDLCINSPTGSGKTLSYALPIVQTLS 50 (436)
Q Consensus 24 ~~~~i~~~~tGsGKT~~~~~~~~~~~~ 50 (436)
+..+++++|||||||... ..+++.+.
T Consensus 149 ~GlilI~G~TGSGKTT~l-~al~~~i~ 174 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLA-ASIYQHCG 174 (372)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 467899999999999753 34444443
No 493
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=88.36 E-value=0.43 Score=43.96 Aligned_cols=37 Identities=24% Similarity=0.150 Sum_probs=23.2
Q ss_pred hHHHHHhhhCCCCCCC--cEEEECCCCchHHHHhHHHHH
Q 013826 10 QVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIV 46 (436)
Q Consensus 10 Q~~a~~~~~~~~~~~~--~~i~~~~tGsGKT~~~~~~~~ 46 (436)
|.++.+.+...+..+. ++++.+|+|+|||..+...+.
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3344444333333343 799999999999987544433
No 494
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=88.32 E-value=0.51 Score=46.88 Aligned_cols=79 Identities=20% Similarity=0.172 Sum_probs=49.5
Q ss_pred cccchhHHHHHhhhCC---C-CCCC--cEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHH
Q 013826 5 SLFPVQVAVWQETIGP---G-LFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 5 ~~~~~Q~~a~~~~~~~---~-~~~~--~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 78 (436)
.+...|.+++-.+... + -.|+ ..+|-...|.||-.+..-.+.+...++ ..++|+++-+..|-..-.+.++.
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG---RKrAlW~SVSsDLKfDAERDL~D 340 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG---RKRALWFSVSSDLKFDAERDLRD 340 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc---cceeEEEEeccccccchhhchhh
Confidence 3556677766554432 1 1232 467777777777766544455555443 34899999999998888888887
Q ss_pred hhhhhCceE
Q 013826 79 IAPAVGLSV 87 (436)
Q Consensus 79 ~~~~~~~~v 87 (436)
.+.. ++.|
T Consensus 341 igA~-~I~V 348 (1300)
T KOG1513|consen 341 IGAT-GIAV 348 (1300)
T ss_pred cCCC-Cccc
Confidence 7543 3443
No 495
>PHA00729 NTP-binding motif containing protein
Probab=88.22 E-value=1.3 Score=37.80 Aligned_cols=23 Identities=26% Similarity=0.099 Sum_probs=18.2
Q ss_pred CcEEEECCCCchHHHHhHHHHHH
Q 013826 25 RDLCINSPTGSGKTLSYALPIVQ 47 (436)
Q Consensus 25 ~~~i~~~~tGsGKT~~~~~~~~~ 47 (436)
.++++.+++|+|||..+...+..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999876554443
No 496
>PHA00012 I assembly protein
Probab=88.18 E-value=0.98 Score=40.46 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHHh
Q 013826 27 LCINSPTGSGKTLSYALPIVQTLSNR 52 (436)
Q Consensus 27 ~i~~~~tGsGKT~~~~~~~~~~~~~~ 52 (436)
-++.+-.|+|||+.+..-+.+.+.++
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcC
Confidence 36889999999998777666655543
No 497
>PRK09165 replicative DNA helicase; Provisional
Probab=88.07 E-value=6.1 Score=38.53 Aligned_cols=63 Identities=11% Similarity=-0.080 Sum_probs=37.2
Q ss_pred HhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhh-----------cCCccEEEEcCCHHHHHHHHHHHHH
Q 013826 15 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----------VRCLRALVVLPTRDLALQVKDVFAA 78 (436)
Q Consensus 15 ~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~-----------~~~~~~lil~P~~~l~~q~~~~~~~ 78 (436)
+.+...+..++-+++.|+||.|||..++-.+........ ..+.+++|++.-.. ..|+...+..
T Consensus 208 D~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs-~~ql~~R~la 281 (497)
T PRK09165 208 DSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMS-AEQLATRILS 281 (497)
T ss_pred hhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCC-HHHHHHHHHH
Confidence 444444545566889999999999877665555443211 02456778764433 3445544433
No 498
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=88.05 E-value=0.99 Score=41.45 Aligned_cols=55 Identities=20% Similarity=0.229 Sum_probs=32.8
Q ss_pred ccchhHHHHHhhhCCCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHH
Q 013826 6 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 68 (436)
Q Consensus 6 ~~~~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l 68 (436)
+.+.+.+.+..+.. .+.++++.++||+|||... ..+...+. +..+++.+-.+.++
T Consensus 163 ~~~~~~~~L~~~v~---~~~~ili~G~tGsGKTTll-~al~~~i~----~~~riv~iEd~~El 217 (340)
T TIGR03819 163 FPPGVARLLRAIVA---ARLAFLISGGTGSGKTTLL-SALLALVA----PDERIVLVEDAAEL 217 (340)
T ss_pred CCHHHHHHHHHHHh---CCCeEEEECCCCCCHHHHH-HHHHccCC----CCCcEEEECCccee
Confidence 34455555555543 4689999999999999742 22332221 33466666555454
No 499
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=88.02 E-value=1.4 Score=43.20 Aligned_cols=62 Identities=19% Similarity=0.099 Sum_probs=39.7
Q ss_pred HHHhhhC-CCCCCCcEEEECCCCchHHHHhHHHHHHHHHHhhcCCccEEEEcCCHHHHHHHHHHHHHh
Q 013826 13 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 79 (436)
Q Consensus 13 a~~~~~~-~~~~~~~~i~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 79 (436)
.++.++. .+..+..+++.+++|+|||..+...+.+.+. .+.+++|++-... ..++.+.+..+
T Consensus 261 ~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~----~g~~~~yis~e~~-~~~i~~~~~~~ 323 (509)
T PRK09302 261 DLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACR----RGERCLLFAFEES-RAQLIRNARSW 323 (509)
T ss_pred HHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHh----CCCcEEEEEecCC-HHHHHHHHHHc
Confidence 3444443 3445677889999999999887666655443 3447888865433 55555555554
No 500
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=88.01 E-value=0.32 Score=45.65 Aligned_cols=32 Identities=22% Similarity=0.165 Sum_probs=21.5
Q ss_pred hhHHHHHhhhCCCCCCCcEEEECCCCchHHHH
Q 013826 9 VQVAVWQETIGPGLFERDLCINSPTGSGKTLS 40 (436)
Q Consensus 9 ~Q~~a~~~~~~~~~~~~~~i~~~~tGsGKT~~ 40 (436)
+|.+|=..+.-+...+.+.++.+|+|||||..
T Consensus 183 GQ~~AKrAleiAAAGgHnLl~~GpPGtGKTml 214 (490)
T COG0606 183 GQEQAKRALEIAAAGGHNLLLVGPPGTGKTML 214 (490)
T ss_pred CcHHHHHHHHHHHhcCCcEEEecCCCCchHHh
Confidence 35444333322334578999999999999974
Done!