Query 013827
Match_columns 436
No_of_seqs 683 out of 4156
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 07:47:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0270 WD40 repeat-containing 100.0 4.1E-50 8.8E-55 342.1 30.8 367 43-426 94-461 (463)
2 KOG0271 Notchless-like WD40 re 100.0 4.3E-51 9.4E-56 341.6 21.1 333 6-412 105-479 (480)
3 KOG0271 Notchless-like WD40 re 100.0 5E-49 1.1E-53 329.2 26.5 302 70-427 112-452 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 3.7E-46 8.1E-51 315.9 21.5 284 71-412 173-458 (459)
5 KOG0286 G-protein beta subunit 100.0 6.3E-43 1.4E-47 283.0 27.1 290 70-412 52-343 (343)
6 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-43 2.4E-48 300.8 18.5 250 138-428 182-432 (459)
7 KOG0284 Polyadenylation factor 100.0 3.6E-41 7.8E-46 284.4 17.4 285 73-414 96-380 (464)
8 KOG0273 Beta-transducin family 100.0 7.5E-39 1.6E-43 275.2 28.9 331 16-414 177-523 (524)
9 KOG0315 G-protein beta subunit 100.0 1E-38 2.2E-43 252.9 26.7 290 86-427 11-301 (311)
10 KOG0263 Transcription initiati 100.0 3.9E-39 8.5E-44 293.9 24.5 265 139-419 386-654 (707)
11 KOG0273 Beta-transducin family 100.0 1.8E-38 4E-43 272.8 27.2 299 71-423 176-491 (524)
12 KOG0279 G protein beta subunit 100.0 5.2E-37 1.1E-41 247.2 28.6 287 70-415 12-314 (315)
13 KOG0277 Peroxisomal targeting 100.0 6.9E-38 1.5E-42 248.9 22.1 294 76-413 11-308 (311)
14 KOG0286 G-protein beta subunit 100.0 5.1E-37 1.1E-41 248.8 26.7 253 128-428 59-317 (343)
15 KOG0279 G protein beta subunit 100.0 8E-37 1.7E-41 246.1 25.1 249 142-429 27-277 (315)
16 KOG0265 U5 snRNP-specific prot 100.0 2.4E-36 5.2E-41 245.8 25.8 289 69-412 43-336 (338)
17 KOG0295 WD40 repeat-containing 100.0 8.6E-37 1.9E-41 254.5 23.5 287 70-413 105-405 (406)
18 KOG0318 WD40 repeat stress pro 100.0 1.3E-35 2.7E-40 258.7 30.5 324 69-419 186-565 (603)
19 KOG0645 WD40 repeat protein [G 100.0 1.5E-35 3.2E-40 237.8 27.6 290 69-414 10-311 (312)
20 KOG0263 Transcription initiati 100.0 1.4E-36 3.1E-41 277.2 21.5 242 73-370 378-650 (707)
21 KOG0315 G-protein beta subunit 100.0 9.8E-35 2.1E-39 230.3 25.2 284 31-392 17-309 (311)
22 KOG0291 WD40-repeat-containing 100.0 3E-34 6.5E-39 260.1 31.1 348 16-424 188-560 (893)
23 PLN00181 protein SPA1-RELATED; 100.0 9.7E-34 2.1E-38 284.6 38.4 293 71-413 481-792 (793)
24 cd00200 WD40 WD40 domain, foun 100.0 1.1E-33 2.5E-38 251.8 34.7 283 71-412 7-289 (289)
25 KOG0284 Polyadenylation factor 100.0 2.5E-36 5.4E-41 255.2 15.9 248 125-422 97-345 (464)
26 KOG0266 WD40 repeat-containing 100.0 2.4E-34 5.2E-39 269.2 30.0 285 72-414 158-454 (456)
27 KOG0296 Angio-associated migra 100.0 1.3E-34 2.8E-39 241.7 24.7 325 11-414 58-398 (399)
28 KOG0645 WD40 repeat protein [G 100.0 7.6E-35 1.6E-39 233.8 22.1 291 12-369 9-311 (312)
29 KOG0319 WD40-repeat-containing 100.0 7.1E-35 1.5E-39 263.7 24.3 294 71-419 321-624 (775)
30 KOG0276 Vesicle coat complex C 100.0 2E-34 4.3E-39 256.1 26.3 281 71-408 11-293 (794)
31 KOG0265 U5 snRNP-specific prot 100.0 3.1E-34 6.8E-39 233.5 24.6 249 139-427 55-309 (338)
32 KOG0293 WD40 repeat-containing 100.0 1.7E-34 3.7E-39 244.5 23.6 289 70-416 221-515 (519)
33 KOG0319 WD40-repeat-containing 100.0 1.5E-34 3.4E-39 261.5 24.8 321 31-427 257-590 (775)
34 KOG0285 Pleiotropic regulator 100.0 2.9E-34 6.3E-39 238.9 23.4 287 70-415 148-440 (460)
35 KOG0295 WD40 repeat-containing 100.0 9.3E-35 2E-39 242.4 19.1 243 139-423 116-373 (406)
36 KOG0285 Pleiotropic regulator 100.0 1.2E-34 2.7E-39 241.1 19.0 240 137-421 157-396 (460)
37 KOG0282 mRNA splicing factor [ 100.0 1E-34 2.3E-39 250.6 18.6 288 70-412 211-503 (503)
38 KOG0281 Beta-TrCP (transducin 100.0 2.7E-35 5.8E-40 244.3 14.4 278 72-420 196-483 (499)
39 KOG0291 WD40-repeat-containing 100.0 1.1E-32 2.5E-37 249.9 29.5 294 73-422 307-620 (893)
40 KOG0310 Conserved WD40 repeat- 100.0 3.4E-33 7.4E-38 241.7 24.6 291 69-417 22-312 (487)
41 KOG0292 Vesicle coat complex C 100.0 4.8E-33 1E-37 256.4 26.2 289 71-417 7-324 (1202)
42 KOG0281 Beta-TrCP (transducin 100.0 6.7E-35 1.5E-39 241.9 12.3 234 124-419 197-433 (499)
43 KOG0264 Nucleosome remodeling 100.0 3.5E-32 7.5E-37 233.7 28.6 251 140-415 134-405 (422)
44 KOG0313 Microtubule binding pr 100.0 2.5E-32 5.4E-37 229.2 26.1 291 71-414 103-418 (423)
45 KOG0266 WD40 repeat-containing 100.0 2.5E-32 5.4E-37 255.6 28.9 249 138-425 166-420 (456)
46 KOG0277 Peroxisomal targeting 100.0 3.5E-33 7.5E-38 222.2 19.0 242 151-427 36-278 (311)
47 KOG0296 Angio-associated migra 100.0 1.5E-32 3.3E-37 229.4 23.1 306 70-427 61-369 (399)
48 KOG0316 Conserved WD40 repeat- 100.0 1.7E-32 3.7E-37 215.9 19.2 237 138-421 24-264 (307)
49 KOG0275 Conserved WD40 repeat- 100.0 1.7E-33 3.7E-38 231.7 14.2 290 71-412 211-507 (508)
50 KOG0305 Anaphase promoting com 100.0 2.1E-31 4.7E-36 239.3 28.7 279 78-418 182-465 (484)
51 KOG0292 Vesicle coat complex C 100.0 2.2E-32 4.7E-37 252.1 21.9 254 137-422 15-288 (1202)
52 KOG0276 Vesicle coat complex C 100.0 2.9E-32 6.3E-37 242.4 21.4 242 139-421 21-264 (794)
53 KOG0283 WD40 repeat-containing 100.0 2.5E-32 5.4E-37 251.6 20.9 267 137-416 273-578 (712)
54 KOG0306 WD40-repeat-containing 100.0 2.7E-31 5.8E-36 241.0 26.7 289 68-419 368-669 (888)
55 KOG0318 WD40 repeat stress pro 100.0 2.4E-30 5.2E-35 225.9 30.7 308 62-418 48-396 (603)
56 KOG0316 Conserved WD40 repeat- 100.0 3.7E-31 8E-36 208.4 22.2 280 70-413 14-298 (307)
57 KOG0641 WD40 repeat protein [G 100.0 5.6E-30 1.2E-34 200.7 28.5 299 70-414 29-349 (350)
58 KOG0278 Serine/threonine kinas 100.0 4.8E-32 1E-36 215.3 15.7 289 69-419 10-302 (334)
59 KOG0313 Microtubule binding pr 100.0 5.4E-31 1.2E-35 221.2 22.3 289 31-369 122-418 (423)
60 PTZ00421 coronin; Provisional 100.0 6.1E-30 1.3E-34 238.4 31.8 255 140-421 29-297 (493)
61 PLN00181 protein SPA1-RELATED; 100.0 9.8E-30 2.1E-34 255.7 35.0 254 127-419 486-743 (793)
62 KOG0643 Translation initiation 100.0 1.1E-30 2.5E-35 209.4 22.0 237 138-415 17-318 (327)
63 PTZ00421 coronin; Provisional 100.0 6.6E-29 1.4E-33 231.5 35.2 249 127-416 78-333 (493)
64 KOG0293 WD40 repeat-containing 100.0 5.4E-31 1.2E-35 223.4 19.0 289 11-370 218-514 (519)
65 cd00200 WD40 WD40 domain, foun 100.0 4E-29 8.6E-34 222.4 30.8 247 127-423 12-258 (289)
66 KOG0973 Histone transcription 100.0 3.9E-30 8.4E-35 243.2 25.1 314 72-418 12-359 (942)
67 KOG0282 mRNA splicing factor [ 100.0 4.8E-31 1E-35 228.1 16.8 252 128-425 218-473 (503)
68 PTZ00420 coronin; Provisional 100.0 8.7E-29 1.9E-33 231.7 32.7 229 149-417 50-296 (568)
69 KOG0306 WD40-repeat-containing 100.0 3.1E-29 6.6E-34 227.7 26.3 217 194-427 367-635 (888)
70 KOG0274 Cdc4 and related F-box 100.0 2.3E-29 5E-34 234.8 26.2 286 72-426 207-494 (537)
71 KOG1407 WD40 repeat protein [F 100.0 3.2E-29 7E-34 200.5 23.0 243 140-424 29-271 (313)
72 KOG0275 Conserved WD40 repeat- 100.0 5.2E-30 1.1E-34 211.2 17.4 256 139-426 221-479 (508)
73 KOG0264 Nucleosome remodeling 100.0 6.1E-29 1.3E-33 213.8 24.1 269 70-370 121-405 (422)
74 KOG0288 WD40 repeat protein Ti 100.0 4.8E-30 1.1E-34 217.6 17.0 282 70-412 172-459 (459)
75 KOG0647 mRNA export protein (c 100.0 1.7E-28 3.7E-33 200.3 25.0 278 71-405 25-315 (347)
76 KOG0772 Uncharacterized conser 100.0 9.3E-29 2E-33 215.5 24.2 302 71-415 165-488 (641)
77 KOG0299 U3 snoRNP-associated p 100.0 1.1E-28 2.4E-33 212.3 22.7 298 70-413 139-455 (479)
78 KOG0269 WD40 repeat-containing 100.0 6.3E-29 1.4E-33 226.5 21.7 301 72-416 38-342 (839)
79 KOG0268 Sof1-like rRNA process 100.0 1.6E-29 3.5E-34 211.1 16.1 294 62-419 56-350 (433)
80 KOG1446 Histone H3 (Lys4) meth 100.0 2.5E-27 5.4E-32 195.2 28.6 246 139-425 22-273 (311)
81 KOG0289 mRNA splicing factor [ 100.0 5.2E-28 1.1E-32 206.6 24.7 284 73-413 219-505 (506)
82 KOG1407 WD40 repeat protein [F 100.0 2E-27 4.4E-32 190.2 25.7 286 68-414 15-311 (313)
83 PTZ00420 coronin; Provisional 100.0 1E-26 2.2E-31 217.8 33.6 253 101-396 55-319 (568)
84 KOG1446 Histone H3 (Lys4) meth 100.0 1.2E-26 2.5E-31 191.3 29.7 283 72-416 13-305 (311)
85 KOG1332 Vesicle coat complex C 100.0 4.3E-28 9.4E-33 192.2 20.5 242 142-415 22-287 (299)
86 KOG0647 mRNA export protein (c 100.0 7.5E-28 1.6E-32 196.6 22.3 244 138-421 34-288 (347)
87 KOG0640 mRNA cleavage stimulat 100.0 6.4E-28 1.4E-32 197.7 21.8 293 70-414 109-426 (430)
88 KOG1408 WD40 repeat protein [F 100.0 2.4E-27 5.3E-32 214.3 27.0 362 31-417 277-716 (1080)
89 KOG0305 Anaphase promoting com 100.0 9.9E-28 2.1E-32 215.8 23.7 244 73-372 217-464 (484)
90 KOG0269 WD40 repeat-containing 100.0 1.6E-28 3.4E-33 223.9 17.8 257 140-427 48-309 (839)
91 KOG0308 Conserved WD40 repeat- 100.0 3.3E-28 7.2E-33 217.7 19.1 242 140-418 34-289 (735)
92 KOG0274 Cdc4 and related F-box 100.0 9.9E-28 2.1E-32 223.9 22.9 235 143-425 218-452 (537)
93 KOG0283 WD40 repeat-containing 100.0 1.2E-27 2.5E-32 221.0 22.8 189 142-370 379-577 (712)
94 KOG0772 Uncharacterized conser 100.0 1.4E-27 2.9E-32 208.3 20.6 254 138-424 174-455 (641)
95 KOG1036 Mitotic spindle checkp 100.0 1.5E-26 3.4E-31 189.6 25.6 273 71-404 11-294 (323)
96 KOG0289 mRNA splicing factor [ 100.0 3.6E-27 7.8E-32 201.5 22.3 231 140-412 228-460 (506)
97 KOG0640 mRNA cleavage stimulat 100.0 6.7E-28 1.4E-32 197.6 15.8 270 138-429 119-398 (430)
98 KOG0301 Phospholipase A2-activ 100.0 1.4E-26 2.9E-31 208.9 25.3 281 68-416 9-290 (745)
99 KOG0310 Conserved WD40 repeat- 100.0 2.6E-27 5.5E-32 205.4 18.6 240 140-421 35-275 (487)
100 KOG0278 Serine/threonine kinas 100.0 6.2E-28 1.3E-32 192.0 13.2 244 70-372 56-300 (334)
101 KOG0300 WD40 repeat-containing 100.0 5E-27 1.1E-31 193.1 19.0 319 68-416 143-478 (481)
102 KOG0299 U3 snoRNP-associated p 100.0 1.8E-26 3.8E-31 198.8 22.9 254 140-418 151-414 (479)
103 KOG0294 WD40 repeat-containing 100.0 2.1E-25 4.6E-30 183.4 27.3 229 142-416 52-283 (362)
104 KOG0288 WD40 repeat protein Ti 100.0 1.2E-27 2.5E-32 203.3 13.8 240 140-422 184-425 (459)
105 KOG0302 Ribosome Assembly prot 100.0 2.6E-26 5.6E-31 193.0 20.5 251 142-412 164-436 (440)
106 KOG0646 WD40 repeat protein [G 99.9 1.7E-26 3.8E-31 199.2 19.9 280 86-413 51-349 (476)
107 KOG1036 Mitotic spindle checkp 99.9 7.4E-26 1.6E-30 185.7 22.6 242 138-424 20-272 (323)
108 KOG0643 Translation initiation 99.9 8.7E-26 1.9E-30 181.5 22.4 221 196-425 6-231 (327)
109 KOG0639 Transducin-like enhanc 99.9 3.4E-26 7.3E-31 199.1 20.8 287 71-413 417-703 (705)
110 KOG0307 Vesicle coat complex C 99.9 3.4E-27 7.5E-32 224.4 15.0 301 77-417 10-330 (1049)
111 KOG2106 Uncharacterized conser 99.9 5.1E-24 1.1E-28 185.7 30.9 354 23-428 56-491 (626)
112 KOG0308 Conserved WD40 repeat- 99.9 1E-25 2.2E-30 201.9 20.7 288 78-416 29-329 (735)
113 KOG0973 Histone transcription 99.9 1.3E-25 2.8E-30 212.8 22.5 253 139-421 21-319 (942)
114 KOG2106 Uncharacterized conser 99.9 3.6E-24 7.8E-29 186.6 29.6 282 72-413 199-520 (626)
115 KOG1063 RNA polymerase II elon 99.9 5.4E-25 1.2E-29 198.6 25.0 341 31-421 213-657 (764)
116 KOG1539 WD repeat protein [Gen 99.9 4.2E-25 9E-30 203.3 24.4 348 20-414 247-648 (910)
117 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.7E-24 1.7E-28 190.3 32.0 278 86-423 2-288 (300)
118 KOG0300 WD40 repeat-containing 99.9 1.9E-25 4.1E-30 183.9 18.6 234 142-418 159-432 (481)
119 KOG1539 WD repeat protein [Gen 99.9 4.1E-24 8.8E-29 196.8 29.1 320 31-424 179-616 (910)
120 KOG0641 WD40 repeat protein [G 99.9 3.9E-24 8.5E-29 168.0 24.4 300 18-369 33-349 (350)
121 KOG0646 WD40 repeat protein [G 99.9 2.1E-24 4.6E-29 186.4 24.7 240 143-423 50-316 (476)
122 KOG2055 WD40 repeat protein [G 99.9 1.6E-24 3.4E-29 186.9 22.7 294 72-414 212-512 (514)
123 KOG4283 Transcription-coupled 99.9 4.2E-25 9E-30 180.0 17.9 218 198-426 41-288 (397)
124 KOG4378 Nuclear protein COP1 [ 99.9 2.4E-24 5.2E-29 187.4 23.6 295 31-395 9-305 (673)
125 KOG1408 WD40 repeat protein [F 99.9 3.6E-25 7.9E-30 200.4 18.9 289 31-370 399-714 (1080)
126 KOG2445 Nuclear pore complex c 99.9 1.3E-23 2.9E-28 172.3 25.5 245 140-414 22-318 (361)
127 KOG1034 Transcriptional repres 99.9 4.4E-24 9.6E-29 176.6 22.7 305 69-414 34-383 (385)
128 KOG0302 Ribosome Assembly prot 99.9 1.7E-24 3.7E-29 182.1 19.6 222 189-418 140-382 (440)
129 KOG0294 WD40 repeat-containing 99.9 1.4E-23 3.1E-28 172.7 23.4 241 69-371 39-283 (362)
130 KOG1274 WD40 repeat protein [G 99.9 1.2E-23 2.5E-28 195.9 25.2 242 140-415 22-263 (933)
131 KOG1273 WD40 repeat protein [G 99.9 5E-24 1.1E-28 175.4 19.8 253 127-426 26-292 (405)
132 KOG0267 Microtubule severing p 99.9 6E-26 1.3E-30 205.6 9.2 222 141-405 38-259 (825)
133 KOG4283 Transcription-coupled 99.9 6.4E-24 1.4E-28 173.2 19.7 216 141-372 54-279 (397)
134 KOG0268 Sof1-like rRNA process 99.9 7.7E-25 1.7E-29 183.3 14.7 231 140-418 75-306 (433)
135 KOG1274 WD40 repeat protein [G 99.9 5.3E-23 1.1E-27 191.6 26.8 278 71-411 11-297 (933)
136 KOG0267 Microtubule severing p 99.9 1.5E-25 3.2E-30 203.2 9.5 211 196-422 24-234 (825)
137 KOG2096 WD40 repeat protein [G 99.9 1.3E-22 2.7E-27 167.4 25.3 308 69-415 82-403 (420)
138 KOG0290 Conserved WD40 repeat- 99.9 8.5E-23 1.8E-27 166.3 23.7 301 74-410 45-361 (364)
139 KOG0270 WD40 repeat-containing 99.9 2.1E-23 4.6E-28 179.2 20.9 245 85-373 192-453 (463)
140 KOG2048 WD40 repeat protein [G 99.9 2.5E-22 5.3E-27 181.3 28.2 305 71-418 108-509 (691)
141 KOG0321 WD40 repeat-containing 99.9 6E-23 1.3E-27 183.9 23.9 243 140-418 109-395 (720)
142 KOG0301 Phospholipase A2-activ 99.9 1.6E-23 3.6E-28 189.2 19.8 225 142-414 24-249 (745)
143 KOG4328 WD40 protein [Function 99.9 7.3E-23 1.6E-27 176.5 22.0 259 127-423 189-459 (498)
144 KOG1332 Vesicle coat complex C 99.9 3.5E-23 7.7E-28 164.5 18.3 255 69-370 7-287 (299)
145 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.6E-21 3.6E-26 175.2 29.7 281 31-393 8-300 (300)
146 KOG4378 Nuclear protein COP1 [ 99.9 1.1E-22 2.5E-27 177.0 20.6 273 101-421 13-287 (673)
147 KOG2445 Nuclear pore complex c 99.9 7.7E-22 1.7E-26 162.1 23.0 267 69-370 9-319 (361)
148 KOG0639 Transducin-like enhanc 99.9 7.4E-23 1.6E-27 178.4 17.8 268 29-368 435-703 (705)
149 KOG0321 WD40 repeat-containing 99.9 3.8E-22 8.3E-27 178.8 21.8 259 141-426 62-359 (720)
150 KOG2048 WD40 repeat protein [G 99.9 4.6E-21 1E-25 173.1 28.7 284 73-415 25-320 (691)
151 KOG1007 WD repeat protein TSSC 99.9 2E-21 4.4E-26 158.2 23.6 208 198-415 121-362 (370)
152 KOG2096 WD40 repeat protein [G 99.9 1.6E-21 3.6E-26 160.9 22.7 252 140-421 95-367 (420)
153 KOG1273 WD40 repeat protein [G 99.9 2.1E-21 4.4E-26 160.1 22.3 290 76-417 26-325 (405)
154 KOG2919 Guanine nucleotide-bin 99.9 1.8E-21 4E-26 160.9 21.6 289 73-405 49-361 (406)
155 KOG2919 Guanine nucleotide-bin 99.9 6.1E-22 1.3E-26 163.7 18.3 295 16-360 48-361 (406)
156 KOG4328 WD40 protein [Function 99.9 4.1E-22 8.8E-27 172.0 18.0 209 196-414 182-399 (498)
157 KOG0650 WD40 repeat nucleolar 99.9 1.2E-21 2.7E-26 174.3 20.6 323 59-411 383-732 (733)
158 KOG1587 Cytoplasmic dynein int 99.9 1.3E-20 2.7E-25 175.1 27.8 274 101-415 223-517 (555)
159 KOG1538 Uncharacterized conser 99.9 1.5E-21 3.3E-26 175.9 19.1 276 75-416 14-295 (1081)
160 KOG0307 Vesicle coat complex C 99.9 7.8E-22 1.7E-26 188.3 16.8 256 71-372 62-330 (1049)
161 KOG1188 WD40 repeat protein [G 99.9 3E-21 6.6E-26 160.8 18.1 244 143-421 40-353 (376)
162 KOG1063 RNA polymerase II elon 99.9 2.9E-20 6.2E-25 168.4 25.5 340 15-414 265-699 (764)
163 KOG0303 Actin-binding protein 99.9 8.4E-21 1.8E-25 161.0 20.0 220 195-427 76-307 (472)
164 KOG0290 Conserved WD40 repeat- 99.9 1.9E-20 4.2E-25 152.7 19.8 210 198-416 94-320 (364)
165 KOG1009 Chromatin assembly com 99.9 5.6E-20 1.2E-24 156.6 22.5 313 72-419 12-377 (434)
166 KOG0642 Cell-cycle nuclear pro 99.9 1.1E-20 2.4E-25 167.3 16.5 258 137-428 300-575 (577)
167 KOG1007 WD repeat protein TSSC 99.9 3.5E-19 7.6E-24 145.3 23.2 272 68-369 58-361 (370)
168 KOG0303 Actin-binding protein 99.9 2.9E-19 6.4E-24 151.7 22.7 241 114-395 75-321 (472)
169 KOG1517 Guanine nucleotide bin 99.8 5.4E-19 1.2E-23 167.3 25.0 306 75-417 1066-1384(1387)
170 KOG2055 WD40 repeat protein [G 99.8 2.7E-19 5.9E-24 154.8 20.7 242 140-420 222-473 (514)
171 KOG1524 WD40 repeat-containing 99.8 2.3E-19 4.9E-24 158.1 20.1 287 70-425 11-297 (737)
172 KOG0650 WD40 repeat nucleolar 99.8 1.5E-19 3.3E-24 161.1 17.8 231 140-413 409-679 (733)
173 KOG1310 WD40 repeat protein [G 99.8 1.2E-19 2.7E-24 160.2 16.1 233 191-425 41-314 (758)
174 KOG1034 Transcriptional repres 99.8 1.2E-19 2.6E-24 150.6 14.5 250 69-369 85-383 (385)
175 KOG1445 Tumor-specific antigen 99.8 4.5E-19 9.8E-24 159.3 17.8 258 79-373 585-848 (1012)
176 COG2319 FOG: WD40 repeat [Gene 99.8 4.4E-17 9.5E-22 153.7 32.1 296 70-417 62-362 (466)
177 KOG4227 WD40 repeat protein [G 99.8 2.8E-18 6E-23 145.8 20.7 299 62-414 45-387 (609)
178 KOG1587 Cytoplasmic dynein int 99.8 5.7E-18 1.2E-22 157.5 23.6 267 71-370 240-517 (555)
179 KOG0649 WD40 repeat protein [G 99.8 1E-17 2.2E-22 133.6 20.6 243 139-414 18-274 (325)
180 PRK11028 6-phosphogluconolacto 99.8 2.1E-16 4.6E-21 143.6 31.9 242 140-415 43-305 (330)
181 KOG1963 WD40 repeat protein [G 99.8 6.2E-17 1.3E-21 151.1 28.6 302 76-423 163-547 (792)
182 KOG1188 WD40 repeat protein [G 99.8 2.3E-18 5.1E-23 143.8 17.2 198 214-420 41-248 (376)
183 KOG1445 Tumor-specific antigen 99.8 2.5E-18 5.4E-23 154.6 17.8 254 140-427 588-857 (1012)
184 KOG4227 WD40 repeat protein [G 99.8 1E-17 2.2E-22 142.4 19.7 247 136-416 61-324 (609)
185 KOG0322 G-protein beta subunit 99.8 5.3E-18 1.2E-22 136.8 15.5 289 62-413 5-322 (323)
186 PRK11028 6-phosphogluconolacto 99.8 5.4E-16 1.2E-20 140.9 30.5 275 30-369 8-304 (330)
187 KOG2110 Uncharacterized conser 99.8 2.6E-16 5.7E-21 133.0 25.6 231 139-417 13-251 (391)
188 KOG0771 Prolactin regulatory e 99.8 8.4E-17 1.8E-21 138.4 22.9 204 204-417 148-357 (398)
189 KOG1009 Chromatin assembly com 99.8 2.2E-17 4.7E-22 141.0 17.8 253 144-420 27-335 (434)
190 COG2319 FOG: WD40 repeat [Gene 99.8 5.8E-16 1.3E-20 146.0 29.5 243 140-423 74-323 (466)
191 KOG0649 WD40 repeat protein [G 99.8 1.1E-15 2.5E-20 122.0 25.2 287 75-412 12-314 (325)
192 KOG0644 Uncharacterized conser 99.8 2.4E-18 5.1E-23 159.2 11.5 236 139-419 198-473 (1113)
193 KOG1538 Uncharacterized conser 99.8 2.1E-17 4.5E-22 149.6 17.1 231 136-413 17-251 (1081)
194 KOG1523 Actin-related protein 99.8 2.8E-16 6E-21 130.4 22.1 248 126-411 12-275 (361)
195 KOG2139 WD40 repeat protein [G 99.8 1.9E-15 4E-20 127.6 26.9 305 73-414 98-431 (445)
196 KOG1517 Guanine nucleotide bin 99.8 1.5E-16 3.3E-21 151.0 22.7 249 137-418 1070-1337(1387)
197 KOG0642 Cell-cycle nuclear pro 99.8 2.3E-17 4.9E-22 146.6 15.5 266 71-382 292-572 (577)
198 KOG1334 WD40 repeat protein [G 99.8 5.5E-17 1.2E-21 141.7 16.6 308 68-418 137-470 (559)
199 PRK01742 tolB translocation pr 99.7 4.7E-16 1E-20 145.7 23.4 236 100-394 184-426 (429)
200 KOG4497 Uncharacterized conser 99.7 7.1E-16 1.5E-20 128.5 21.2 291 78-422 13-399 (447)
201 KOG1272 WD40-repeat-containing 99.7 7.2E-18 1.6E-22 146.3 9.2 232 131-412 129-360 (545)
202 KOG0644 Uncharacterized conser 99.7 4.5E-18 9.8E-23 157.4 8.0 228 189-425 179-437 (1113)
203 KOG1310 WD40 repeat protein [G 99.7 1.9E-16 4.2E-21 140.3 16.2 215 126-374 52-308 (758)
204 KOG1523 Actin-related protein 99.7 8.1E-16 1.7E-20 127.7 18.0 209 199-417 9-239 (361)
205 KOG0771 Prolactin regulatory e 99.7 1.4E-16 3E-21 137.0 13.8 193 139-370 152-355 (398)
206 KOG1963 WD40 repeat protein [G 99.7 1.4E-14 3E-19 135.7 27.3 223 79-319 22-324 (792)
207 KOG2394 WD40 protein DMR-N9 [G 99.7 2.4E-15 5.1E-20 133.2 20.6 283 76-420 126-458 (636)
208 PRK01742 tolB translocation pr 99.7 4.4E-15 9.5E-20 139.2 23.4 202 197-422 200-411 (429)
209 KOG2111 Uncharacterized conser 99.7 2.1E-14 4.5E-19 119.4 24.3 236 140-417 14-259 (346)
210 KOG3881 Uncharacterized conser 99.7 5.6E-15 1.2E-19 126.0 20.8 212 199-425 104-331 (412)
211 KOG1524 WD40 repeat-containing 99.7 6.9E-16 1.5E-20 136.4 14.6 176 214-410 76-251 (737)
212 KOG2110 Uncharacterized conser 99.7 3E-13 6.6E-18 114.7 29.2 234 74-370 6-249 (391)
213 KOG2139 WD40 repeat protein [G 99.7 1.3E-14 2.9E-19 122.5 20.7 243 139-422 106-391 (445)
214 PRK03629 tolB translocation pr 99.7 6.8E-14 1.5E-18 130.8 27.7 238 99-394 178-428 (429)
215 KOG2394 WD40 protein DMR-N9 [G 99.7 6.6E-16 1.4E-20 136.6 13.2 226 82-320 182-455 (636)
216 KOG1240 Protein kinase contain 99.7 2.4E-14 5.1E-19 138.5 23.3 248 140-419 1058-1339(1431)
217 KOG1272 WD40-repeat-containing 99.7 4.8E-16 1E-20 135.1 10.7 285 76-424 132-419 (545)
218 PF02239 Cytochrom_D1: Cytochr 99.7 4.5E-13 9.7E-18 121.6 29.7 253 139-423 44-356 (369)
219 KOG1334 WD40 repeat protein [G 99.6 7.8E-15 1.7E-19 128.4 15.5 259 136-425 147-435 (559)
220 KOG2321 WD40 repeat protein [G 99.6 1.3E-13 2.8E-18 123.3 22.8 288 70-417 48-346 (703)
221 PRK04922 tolB translocation pr 99.6 2.2E-13 4.7E-18 128.0 26.0 211 137-393 209-432 (433)
222 KOG0322 G-protein beta subunit 99.6 1.8E-14 3.8E-19 116.7 15.6 159 198-368 148-322 (323)
223 PF08662 eIF2A: Eukaryotic tra 99.6 9.6E-14 2.1E-18 114.5 19.2 156 247-420 9-184 (194)
224 KOG1354 Serine/threonine prote 99.6 2.2E-13 4.9E-18 114.4 21.1 306 73-429 25-374 (433)
225 KOG4497 Uncharacterized conser 99.6 4.2E-15 9E-20 124.0 10.7 233 138-421 15-247 (447)
226 KOG2111 Uncharacterized conser 99.6 5.8E-12 1.3E-16 105.0 28.8 278 75-413 7-321 (346)
227 PRK03629 tolB translocation pr 99.6 1E-12 2.2E-17 123.0 27.4 204 198-421 196-412 (429)
228 KOG1240 Protein kinase contain 99.6 1.3E-13 2.9E-18 133.4 21.6 227 189-425 1037-1284(1431)
229 PRK02889 tolB translocation pr 99.6 4.3E-13 9.4E-18 125.6 24.8 200 198-413 193-402 (427)
230 PF10282 Lactonase: Lactonase, 99.6 6E-12 1.3E-16 114.5 31.5 273 100-414 15-322 (345)
231 KOG0280 Uncharacterized conser 99.6 1.3E-13 2.8E-18 113.4 18.2 251 73-369 69-333 (339)
232 PRK05137 tolB translocation pr 99.6 8.1E-13 1.8E-17 124.3 26.5 237 99-394 181-433 (435)
233 PRK05137 tolB translocation pr 99.6 7.2E-13 1.6E-17 124.7 26.0 203 198-418 199-416 (435)
234 PRK02889 tolB translocation pr 99.6 4E-13 8.7E-18 125.8 23.9 211 138-394 202-425 (427)
235 KOG3881 Uncharacterized conser 99.6 3.7E-13 8E-18 115.0 20.5 214 143-394 115-342 (412)
236 PRK04922 tolB translocation pr 99.6 1.1E-12 2.3E-17 123.4 25.1 200 198-415 201-412 (433)
237 KOG2315 Predicted translation 99.6 3.2E-12 6.9E-17 114.4 23.8 291 75-424 75-400 (566)
238 KOG0280 Uncharacterized conser 99.5 5.5E-12 1.2E-16 104.0 22.7 294 87-417 26-336 (339)
239 KOG0309 Conserved WD40 repeat- 99.5 1.3E-13 2.7E-18 126.9 13.7 298 73-416 24-341 (1081)
240 PF08662 eIF2A: Eukaryotic tra 99.5 5.4E-12 1.2E-16 104.1 19.8 152 204-371 9-181 (194)
241 KOG1409 Uncharacterized conser 99.5 8.5E-12 1.8E-16 105.1 19.4 257 62-370 13-271 (404)
242 PRK04792 tolB translocation pr 99.5 4.3E-11 9.4E-16 112.5 26.6 205 198-420 215-430 (448)
243 PRK04792 tolB translocation pr 99.5 4.7E-11 1E-15 112.3 26.7 214 137-394 223-447 (448)
244 TIGR02800 propeller_TolB tol-p 99.5 4E-11 8.6E-16 113.0 25.3 189 138-370 196-398 (417)
245 TIGR02800 propeller_TolB tol-p 99.5 4.9E-11 1.1E-15 112.4 25.9 199 198-414 187-397 (417)
246 PRK01029 tolB translocation pr 99.5 1E-10 2.3E-15 109.0 27.3 209 199-418 183-407 (428)
247 PRK00178 tolB translocation pr 99.5 6.7E-11 1.5E-15 111.6 26.3 211 139-394 206-428 (430)
248 PRK01029 tolB translocation pr 99.5 1E-10 2.2E-15 109.1 26.9 218 136-395 189-426 (428)
249 PF10282 Lactonase: Lactonase, 99.5 6.4E-10 1.4E-14 101.3 31.4 287 74-391 37-345 (345)
250 KOG0974 WD-repeat protein WDR6 99.4 1.2E-11 2.6E-16 118.4 20.5 198 201-416 88-290 (967)
251 PRK00178 tolB translocation pr 99.4 9.4E-11 2E-15 110.6 26.8 200 198-415 196-407 (430)
252 PF02239 Cytochrom_D1: Cytochr 99.4 6.7E-11 1.5E-15 107.5 24.2 195 215-421 7-209 (369)
253 COG5354 Uncharacterized protei 99.4 2E-10 4.4E-15 101.9 25.8 308 72-417 31-398 (561)
254 KOG2321 WD40 repeat protein [G 99.4 4.7E-11 1E-15 107.3 20.0 238 74-370 95-344 (703)
255 KOG2314 Translation initiation 99.4 2.8E-10 6E-15 102.0 24.6 299 75-422 251-581 (698)
256 COG2706 3-carboxymuconate cycl 99.4 1.1E-08 2.5E-13 87.6 32.1 277 100-418 18-325 (346)
257 KOG4547 WD40 repeat-containing 99.4 2.4E-10 5.2E-15 103.3 23.1 194 140-370 2-221 (541)
258 KOG4547 WD40 repeat-containing 99.4 8.4E-11 1.8E-15 106.2 19.9 188 213-415 5-221 (541)
259 KOG0974 WD-repeat protein WDR6 99.4 2.5E-11 5.5E-16 116.2 17.2 187 140-370 96-289 (967)
260 KOG1064 RAVE (regulator of V-A 99.4 3.9E-12 8.4E-17 127.7 11.8 201 198-426 2206-2410(2439)
261 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.4E-08 3.1E-13 90.3 32.3 248 140-422 54-338 (352)
262 PLN02919 haloacid dehalogenase 99.3 1.8E-09 3.8E-14 111.1 30.0 262 140-418 576-892 (1057)
263 KOG1409 Uncharacterized conser 99.3 3.7E-10 8E-15 95.4 19.0 238 141-420 34-276 (404)
264 PF04762 IKI3: IKI3 family; I 99.3 5.3E-09 1.1E-13 105.6 30.1 315 71-416 73-458 (928)
265 COG2706 3-carboxymuconate cycl 99.3 7E-08 1.5E-12 82.8 31.2 268 71-370 37-322 (346)
266 KOG2315 Predicted translation 99.3 1E-08 2.2E-13 92.4 26.1 286 73-422 34-352 (566)
267 COG4946 Uncharacterized protei 99.3 7.6E-09 1.6E-13 91.4 24.6 198 80-320 273-480 (668)
268 KOG2314 Translation initiation 99.2 5.2E-09 1.1E-13 94.0 23.4 285 77-418 214-529 (698)
269 KOG1064 RAVE (regulator of V-A 99.2 6.5E-11 1.4E-15 119.2 12.0 181 140-372 2217-2401(2439)
270 KOG2041 WD40 repeat protein [G 99.2 2.3E-09 5E-14 99.1 20.8 249 128-414 18-337 (1189)
271 COG5170 CDC55 Serine/threonine 99.2 4.7E-10 1E-14 93.6 14.8 246 140-413 35-366 (460)
272 KOG1354 Serine/threonine prote 99.2 4.9E-10 1.1E-14 94.7 14.1 211 199-420 24-308 (433)
273 KOG4532 WD40-like repeat conta 99.2 7.8E-09 1.7E-13 84.7 20.3 241 142-416 83-333 (344)
274 KOG4714 Nucleoporin [Nuclear s 99.2 4.4E-10 9.5E-15 91.4 11.2 148 214-370 102-255 (319)
275 KOG4532 WD40-like repeat conta 99.2 1.7E-08 3.7E-13 82.8 20.3 207 214-429 85-297 (344)
276 PLN02919 haloacid dehalogenase 99.1 1.7E-07 3.8E-12 96.6 29.7 168 203-373 685-892 (1057)
277 PF15492 Nbas_N: Neuroblastoma 99.1 3.8E-07 8.3E-12 76.1 25.8 196 201-421 44-266 (282)
278 PRK04043 tolB translocation pr 99.1 1.2E-07 2.6E-12 88.1 25.7 195 202-415 189-401 (419)
279 PF15492 Nbas_N: Neuroblastoma 99.1 5.6E-07 1.2E-11 75.1 26.5 241 79-373 3-263 (282)
280 KOG3914 WD repeat protein WDR4 99.1 3.3E-09 7.3E-14 91.7 13.0 161 76-280 65-229 (390)
281 PRK04043 tolB translocation pr 99.1 2.1E-07 4.7E-12 86.4 25.7 191 138-372 194-403 (419)
282 PF04762 IKI3: IKI3 family; I 99.0 3.1E-06 6.8E-11 85.9 35.6 304 72-417 208-567 (928)
283 PF08450 SGL: SMP-30/Gluconola 99.0 6.7E-07 1.5E-11 77.6 27.0 222 140-403 8-245 (246)
284 COG4946 Uncharacterized protei 99.0 9.6E-07 2.1E-11 78.4 25.5 225 140-400 275-505 (668)
285 KOG3914 WD repeat protein WDR4 99.0 1.7E-08 3.7E-13 87.4 14.1 162 247-421 66-230 (390)
286 KOG4190 Uncharacterized conser 99.0 1.1E-09 2.3E-14 98.4 6.8 209 194-418 729-952 (1034)
287 KOG2695 WD40 repeat protein [G 99.0 2.7E-09 5.9E-14 90.4 8.2 177 207-393 218-402 (425)
288 KOG1912 WD40 repeat protein [G 99.0 2.7E-07 5.9E-12 86.6 21.8 245 137-415 21-305 (1062)
289 KOG1912 WD40 repeat protein [G 98.9 4.3E-07 9.3E-12 85.3 22.6 297 75-419 17-369 (1062)
290 KOG0309 Conserved WD40 repeat- 98.9 8.6E-09 1.9E-13 95.8 11.4 221 140-396 33-258 (1081)
291 TIGR03300 assembly_YfgL outer 98.9 2E-06 4.3E-11 79.9 27.4 229 142-423 104-347 (377)
292 TIGR02658 TTQ_MADH_Hv methylam 98.9 1.4E-06 2.9E-11 77.9 24.7 232 153-424 27-297 (352)
293 COG5170 CDC55 Serine/threonine 98.9 6.6E-08 1.4E-12 81.0 15.1 275 71-368 24-366 (460)
294 KOG0882 Cyclophilin-related pe 98.9 1.2E-08 2.6E-13 89.5 11.1 212 198-422 7-239 (558)
295 KOG2695 WD40 repeat protein [G 98.9 1E-08 2.2E-13 87.0 9.5 173 249-430 217-392 (425)
296 TIGR03300 assembly_YfgL outer 98.8 7.3E-06 1.6E-10 76.1 26.7 221 143-411 145-376 (377)
297 KOG0882 Cyclophilin-related pe 98.8 1.1E-07 2.4E-12 83.6 13.2 250 142-421 19-312 (558)
298 PF08450 SGL: SMP-30/Gluconola 98.8 9.9E-06 2.1E-10 70.3 25.0 197 205-421 4-219 (246)
299 KOG1645 RING-finger-containing 98.8 3.4E-07 7.4E-12 79.5 14.8 220 195-425 188-430 (463)
300 KOG4714 Nucleoporin [Nuclear s 98.8 6.3E-08 1.4E-12 79.1 9.5 199 203-415 39-255 (319)
301 KOG1275 PAB-dependent poly(A) 98.8 3.2E-07 7E-12 87.6 15.5 186 142-367 146-340 (1118)
302 KOG1275 PAB-dependent poly(A) 98.7 7.7E-07 1.7E-11 85.2 17.1 182 214-412 148-340 (1118)
303 KOG1920 IkappaB kinase complex 98.7 9.3E-06 2E-10 80.5 23.6 288 71-414 66-365 (1265)
304 COG5354 Uncharacterized protei 98.7 4.4E-06 9.6E-11 75.0 19.5 233 137-416 38-308 (561)
305 KOG2066 Vacuolar assembly/sort 98.7 1.4E-06 3E-11 82.4 16.9 188 199-414 38-233 (846)
306 PF00400 WD40: WD domain, G-be 98.7 9.2E-08 2E-12 56.2 6.2 39 233-272 1-39 (39)
307 KOG4190 Uncharacterized conser 98.7 1.8E-07 4E-12 84.4 10.5 287 68-410 730-1032(1034)
308 KOG1008 Uncharacterized conser 98.7 1.9E-08 4.2E-13 92.2 4.0 245 128-413 60-334 (783)
309 PF07433 DUF1513: Protein of u 98.6 3.5E-05 7.7E-10 66.5 23.1 228 140-408 13-279 (305)
310 KOG3617 WD40 and TPR repeat-co 98.6 3.3E-06 7.1E-11 80.4 17.4 106 138-274 22-131 (1416)
311 PF07433 DUF1513: Protein of u 98.6 5.7E-05 1.2E-09 65.3 23.0 206 203-421 7-254 (305)
312 KOG1832 HIV-1 Vpr-binding prot 98.6 3.8E-08 8.2E-13 93.5 3.9 200 139-396 1109-1314(1516)
313 PF13360 PQQ_2: PQQ-like domai 98.6 3.4E-05 7.3E-10 66.6 22.1 183 214-420 37-236 (238)
314 PF00400 WD40: WD domain, G-be 98.6 2.2E-07 4.7E-12 54.6 5.6 38 329-367 2-39 (39)
315 KOG2114 Vacuolar assembly/sort 98.6 8.6E-06 1.9E-10 77.8 18.8 202 140-383 32-256 (933)
316 KOG2041 WD40 repeat protein [G 98.5 3.1E-05 6.7E-10 72.6 21.1 288 20-369 17-337 (1189)
317 KOG1645 RING-finger-containing 98.5 8.9E-07 1.9E-11 77.0 10.5 167 225-404 175-351 (463)
318 KOG3617 WD40 and TPR repeat-co 98.5 1E-05 2.2E-10 77.2 17.5 115 75-231 17-131 (1416)
319 PF00930 DPPIV_N: Dipeptidyl p 98.5 8.6E-05 1.9E-09 68.1 23.5 273 73-405 42-349 (353)
320 KOG1832 HIV-1 Vpr-binding prot 98.5 8.4E-08 1.8E-12 91.2 3.8 208 190-422 1091-1299(1516)
321 PF06977 SdiA-regulated: SdiA- 98.5 6.6E-05 1.4E-09 63.9 20.8 205 197-411 18-247 (248)
322 KOG2114 Vacuolar assembly/sort 98.5 2.9E-05 6.3E-10 74.3 19.4 201 202-416 27-245 (933)
323 KOG2066 Vacuolar assembly/sort 98.5 2.6E-05 5.7E-10 74.1 18.8 181 142-370 48-234 (846)
324 KOG1920 IkappaB kinase complex 98.4 9.9E-05 2.2E-09 73.5 22.8 232 140-417 77-325 (1265)
325 PF11768 DUF3312: Protein of u 98.4 4.8E-05 1E-09 70.2 19.1 129 286-426 205-341 (545)
326 COG0823 TolB Periplasmic compo 98.4 8.6E-05 1.9E-09 68.9 20.0 201 199-413 191-399 (425)
327 KOG1008 Uncharacterized conser 98.4 1.7E-07 3.7E-12 86.2 2.0 202 200-414 56-275 (783)
328 PRK11138 outer membrane biogen 98.3 0.00097 2.1E-08 62.3 26.9 229 142-422 119-361 (394)
329 PRK11138 outer membrane biogen 98.3 0.00086 1.9E-08 62.6 26.3 223 143-413 160-393 (394)
330 PF11768 DUF3312: Protein of u 98.3 0.0001 2.3E-09 68.1 19.2 113 202-319 207-331 (545)
331 PF06433 Me-amine-dh_H: Methyl 98.3 0.0025 5.4E-08 56.1 25.9 247 140-422 44-328 (342)
332 PF14583 Pectate_lyase22: Olig 98.3 0.0029 6.2E-08 56.8 26.6 285 76-414 38-381 (386)
333 PRK02888 nitrous-oxide reducta 98.3 0.00025 5.4E-09 67.3 20.5 259 146-415 69-405 (635)
334 KOG3621 WD40 repeat-containing 98.2 0.00031 6.7E-09 66.2 20.1 143 74-253 34-180 (726)
335 COG0823 TolB Periplasmic compo 98.2 0.00013 2.9E-09 67.6 17.7 180 224-418 174-362 (425)
336 COG3391 Uncharacterized conser 98.2 0.0015 3.2E-08 60.5 23.3 212 202-421 75-290 (381)
337 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0019 4.1E-08 53.7 19.5 149 208-370 18-166 (354)
338 PRK02888 nitrous-oxide reducta 98.1 0.0012 2.6E-08 62.8 21.0 215 140-370 138-405 (635)
339 PF13360 PQQ_2: PQQ-like domai 98.1 0.00074 1.6E-08 58.2 18.7 184 142-372 35-233 (238)
340 PF08596 Lgl_C: Lethal giant l 98.0 0.0008 1.7E-08 61.9 18.2 260 140-412 10-333 (395)
341 PF04053 Coatomer_WDAD: Coatom 98.0 0.004 8.7E-08 58.2 22.8 220 74-370 33-263 (443)
342 PF02897 Peptidase_S9_N: Proly 97.9 0.019 4.2E-07 54.1 28.6 253 75-375 125-410 (414)
343 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.00089 1.9E-08 48.4 12.8 102 203-312 2-109 (111)
344 COG3391 Uncharacterized conser 97.9 0.0082 1.8E-07 55.6 22.6 208 202-421 32-246 (381)
345 PF02897 Peptidase_S9_N: Proly 97.9 0.013 2.7E-07 55.3 24.2 241 140-419 132-409 (414)
346 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.013 2.7E-07 49.0 23.8 70 143-241 63-133 (354)
347 PF06433 Me-amine-dh_H: Methyl 97.8 0.021 4.4E-07 50.5 23.6 251 76-374 38-325 (342)
348 PF03178 CPSF_A: CPSF A subuni 97.8 0.013 2.8E-07 53.1 22.3 182 213-411 42-262 (321)
349 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.032 7E-07 51.2 26.6 287 82-414 1-315 (353)
350 PF04841 Vps16_N: Vps16, N-ter 97.7 0.039 8.5E-07 51.6 25.1 174 201-396 81-272 (410)
351 cd00216 PQQ_DH Dehydrogenases 97.7 0.045 9.9E-07 52.6 25.8 235 144-422 111-432 (488)
352 PF04841 Vps16_N: Vps16, N-ter 97.7 0.025 5.5E-07 52.8 23.3 180 224-419 62-251 (410)
353 KOG3621 WD40 repeat-containing 97.7 0.00057 1.2E-08 64.5 12.0 129 140-296 42-180 (726)
354 PF08553 VID27: VID27 cytoplas 97.7 0.0012 2.7E-08 65.1 14.8 147 257-414 494-647 (794)
355 PF04053 Coatomer_WDAD: Coatom 97.7 0.0088 1.9E-07 56.0 19.4 222 140-416 41-264 (443)
356 PF14655 RAB3GAP2_N: Rab3 GTPa 97.6 0.052 1.1E-06 50.1 25.8 87 333-422 302-406 (415)
357 PF08553 VID27: VID27 cytoplas 97.6 0.0067 1.5E-07 60.1 18.8 143 213-368 493-646 (794)
358 KOG2395 Protein involved in va 97.6 0.0069 1.5E-07 55.6 17.3 143 258-414 348-500 (644)
359 KOG4640 Anaphase-promoting com 97.6 0.00041 8.9E-09 64.6 9.4 80 338-422 20-100 (665)
360 COG3386 Gluconolactonase [Carb 97.6 0.047 1E-06 48.5 24.2 228 139-405 32-277 (307)
361 KOG4640 Anaphase-promoting com 97.6 0.00044 9.6E-09 64.4 9.3 94 200-296 20-115 (665)
362 PF03178 CPSF_A: CPSF A subuni 97.6 0.01 2.2E-07 53.7 18.2 176 223-415 2-203 (321)
363 PF06977 SdiA-regulated: SdiA- 97.5 0.0042 9.1E-08 53.1 14.3 178 237-421 15-207 (248)
364 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.0091 2E-07 43.2 13.4 99 293-410 9-110 (111)
365 KOG4441 Proteins containing BT 97.5 0.017 3.8E-07 56.2 19.4 196 203-417 325-549 (571)
366 PRK13616 lipoprotein LpqB; Pro 97.5 0.02 4.4E-07 55.8 19.6 200 74-313 350-564 (591)
367 smart00320 WD40 WD40 repeats. 97.5 0.00049 1.1E-08 39.3 5.7 39 233-272 2-40 (40)
368 PF00780 CNH: CNH domain; Int 97.4 0.074 1.6E-06 46.9 26.2 240 141-426 5-267 (275)
369 KOG2444 WD40 repeat protein [G 97.3 0.00044 9.6E-09 56.3 5.4 145 258-416 32-179 (238)
370 PF08596 Lgl_C: Lethal giant l 97.3 0.0058 1.3E-07 56.3 12.7 158 245-414 3-173 (395)
371 smart00320 WD40 WD40 repeats. 97.3 0.0008 1.7E-08 38.3 5.0 38 329-367 3-40 (40)
372 KOG2444 WD40 repeat protein [G 97.2 0.0011 2.3E-08 54.1 6.1 107 142-275 69-178 (238)
373 COG3490 Uncharacterized protei 97.2 0.12 2.6E-06 44.1 20.2 240 76-369 70-348 (366)
374 PHA02713 hypothetical protein; 97.2 0.011 2.4E-07 57.6 14.0 186 214-418 305-537 (557)
375 KOG2395 Protein involved in va 97.1 0.011 2.4E-07 54.4 12.5 140 215-368 348-499 (644)
376 PRK13616 lipoprotein LpqB; Pro 97.1 0.077 1.7E-06 51.9 18.9 190 201-410 350-564 (591)
377 PF05694 SBP56: 56kDa selenium 97.1 0.24 5.3E-06 45.3 20.3 238 141-403 85-393 (461)
378 PHA02713 hypothetical protein; 97.0 0.094 2E-06 51.3 19.0 146 214-375 353-539 (557)
379 COG3386 Gluconolactonase [Carb 97.0 0.22 4.7E-06 44.4 19.5 198 206-422 30-250 (307)
380 PF14583 Pectate_lyase22: Olig 97.0 0.25 5.5E-06 44.7 23.8 240 135-418 39-332 (386)
381 KOG2079 Vacuolar assembly/sort 97.0 0.011 2.4E-07 58.9 12.1 101 143-273 99-202 (1206)
382 KOG1897 Damage-specific DNA bi 97.0 0.51 1.1E-05 47.4 27.9 315 53-422 510-864 (1096)
383 cd00216 PQQ_DH Dehydrogenases 96.9 0.16 3.5E-06 48.9 19.6 192 215-421 63-326 (488)
384 KOG2247 WD40 repeat-containing 96.9 0.00018 3.8E-09 65.0 -0.7 241 140-425 43-291 (615)
385 KOG4441 Proteins containing BT 96.9 0.27 5.8E-06 48.1 20.7 146 214-373 382-550 (571)
386 COG3204 Uncharacterized protei 96.8 0.13 2.8E-06 44.2 15.7 175 239-416 81-265 (316)
387 COG3204 Uncharacterized protei 96.8 0.3 6.5E-06 42.1 20.1 208 198-411 83-309 (316)
388 PF12894 Apc4_WD40: Anaphase-p 96.7 0.008 1.7E-07 36.2 5.4 35 383-419 11-45 (47)
389 KOG2079 Vacuolar assembly/sort 96.6 0.012 2.6E-07 58.7 8.9 103 300-414 100-203 (1206)
390 PF05694 SBP56: 56kDa selenium 96.6 0.61 1.3E-05 42.9 20.0 99 222-320 221-345 (461)
391 COG3490 Uncharacterized protei 96.5 0.43 9.4E-06 40.9 17.5 147 246-402 70-243 (366)
392 PF00780 CNH: CNH domain; Int 96.5 0.56 1.2E-05 41.3 21.1 150 214-377 8-173 (275)
393 PHA03098 kelch-like protein; P 96.5 0.12 2.7E-06 50.5 15.4 185 214-417 296-514 (534)
394 PF10168 Nup88: Nuclear pore c 96.4 0.69 1.5E-05 46.4 19.9 36 198-233 144-181 (717)
395 KOG3630 Nuclear pore complex, 96.4 0.063 1.4E-06 54.2 12.4 147 245-402 102-262 (1405)
396 PF14655 RAB3GAP2_N: Rab3 GTPa 96.3 0.98 2.1E-05 41.9 24.1 32 287-319 308-339 (415)
397 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.1 1.5 3.2E-05 42.7 28.2 58 361-422 441-498 (527)
398 PF10168 Nup88: Nuclear pore c 96.1 1.8 4E-05 43.5 22.2 80 199-280 83-185 (717)
399 PRK10115 protease 2; Provision 96.1 1.9 4.1E-05 43.5 29.6 249 74-372 127-397 (686)
400 PF12894 Apc4_WD40: Anaphase-p 96.1 0.031 6.8E-07 33.7 5.6 31 338-369 11-41 (47)
401 KOG3630 Nuclear pore complex, 96.0 0.098 2.1E-06 53.0 11.6 142 140-299 109-256 (1405)
402 PF14870 PSII_BNR: Photosynthe 96.0 1.1 2.3E-05 39.8 24.5 180 219-411 120-301 (302)
403 PHA03098 kelch-like protein; P 95.9 0.38 8.2E-06 47.1 15.8 150 214-378 344-520 (534)
404 PHA02790 Kelch-like protein; P 95.9 0.35 7.6E-06 46.5 15.0 181 214-417 273-473 (480)
405 PF10647 Gmad1: Lipoprotein Lp 95.9 1.1 2.3E-05 39.0 20.7 159 202-365 25-192 (253)
406 PF15390 DUF4613: Domain of un 95.8 0.65 1.4E-05 44.0 15.5 160 244-417 20-189 (671)
407 PF07995 GSDH: Glucose / Sorbo 95.8 1.5 3.2E-05 39.9 25.2 245 140-409 10-330 (331)
408 PF05096 Glu_cyclase_2: Glutam 95.7 1.2 2.6E-05 38.3 20.0 184 201-402 45-249 (264)
409 KOG2247 WD40 repeat-containing 95.7 0.0013 2.9E-08 59.6 -2.2 152 199-365 33-184 (615)
410 PRK10115 protease 2; Provision 95.3 3.8 8.2E-05 41.4 29.5 233 139-417 134-397 (686)
411 KOG4499 Ca2+-binding protein R 95.2 1.5 3.3E-05 36.5 14.9 101 135-254 161-264 (310)
412 PF05096 Glu_cyclase_2: Glutam 95.0 2.1 4.6E-05 36.8 21.3 176 140-358 53-250 (264)
413 COG5167 VID27 Protein involved 94.8 1.1 2.3E-05 41.8 13.3 141 259-414 483-632 (776)
414 PF10647 Gmad1: Lipoprotein Lp 94.7 2.6 5.7E-05 36.6 18.2 156 245-410 25-192 (253)
415 PF10313 DUF2415: Uncharacteri 94.5 0.17 3.8E-06 29.5 5.1 32 244-275 1-34 (43)
416 TIGR03118 PEPCTERM_chp_1 conse 94.5 3 6.5E-05 36.5 22.5 221 201-426 23-291 (336)
417 PF10313 DUF2415: Uncharacteri 94.5 0.2 4.3E-06 29.3 5.2 33 384-416 1-35 (43)
418 KOG1916 Nuclear protein, conta 94.2 0.11 2.3E-06 51.4 5.9 170 72-279 131-328 (1283)
419 PF14870 PSII_BNR: Photosynthe 94.1 2.5 5.4E-05 37.5 13.8 152 198-366 142-301 (302)
420 KOG4499 Ca2+-binding protein R 93.8 3.6 7.7E-05 34.5 19.9 149 244-403 109-274 (310)
421 PF12234 Rav1p_C: RAVE protein 93.7 2.6 5.7E-05 41.3 14.3 120 245-369 31-156 (631)
422 COG5167 VID27 Protein involved 93.7 2.7 5.8E-05 39.3 13.4 140 215-369 482-632 (776)
423 COG4590 ABC-type uncharacteriz 93.5 0.44 9.6E-06 43.5 8.2 170 236-418 213-390 (733)
424 PF15390 DUF4613: Domain of un 93.5 1 2.2E-05 42.8 10.7 123 73-231 56-186 (671)
425 PF08728 CRT10: CRT10; InterP 93.4 8 0.00017 38.5 17.1 113 202-316 102-245 (717)
426 PHA02790 Kelch-like protein; P 93.4 7.8 0.00017 37.4 18.1 97 214-319 364-472 (480)
427 KOG2280 Vacuolar assembly/sort 93.3 3 6.5E-05 41.0 13.7 161 202-378 85-255 (829)
428 PF12234 Rav1p_C: RAVE protein 93.3 3.5 7.6E-05 40.5 14.3 104 300-415 42-157 (631)
429 PF14727 PHTB1_N: PTHB1 N-term 93.2 7.2 0.00016 36.4 25.5 247 140-412 34-316 (418)
430 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.2 8.9 0.00019 37.4 20.8 201 215-420 71-339 (527)
431 COG4257 Vgb Streptogramin lyas 92.9 5.7 0.00012 34.2 19.1 237 136-415 66-306 (353)
432 COG5276 Uncharacterized conser 92.6 6.5 0.00014 34.2 22.4 153 200-372 86-244 (370)
433 TIGR02604 Piru_Ver_Nterm putat 92.2 9.6 0.00021 35.3 22.9 62 200-263 123-202 (367)
434 KOG1897 Damage-specific DNA bi 92.2 15 0.00033 37.6 29.3 175 224-414 751-942 (1096)
435 COG4257 Vgb Streptogramin lyas 91.9 7.7 0.00017 33.5 17.5 200 201-417 62-265 (353)
436 KOG2280 Vacuolar assembly/sort 91.8 9.8 0.00021 37.6 15.0 179 223-420 64-252 (829)
437 TIGR02604 Piru_Ver_Nterm putat 91.6 11 0.00024 34.8 16.9 150 244-403 14-202 (367)
438 KOG4460 Nuclear pore complex, 91.5 3.1 6.8E-05 39.0 11.0 29 200-229 103-131 (741)
439 PLN02153 epithiospecifier prot 91.4 11 0.00024 34.4 16.6 54 361-417 217-287 (341)
440 PF07569 Hira: TUP1-like enhan 91.3 3.4 7.4E-05 34.9 10.6 85 286-375 12-101 (219)
441 TIGR03074 PQQ_membr_DH membran 91.1 20 0.00043 36.7 22.8 205 215-422 196-485 (764)
442 PLN02153 epithiospecifier prot 90.8 13 0.00028 34.0 18.4 22 214-235 87-113 (341)
443 PF07569 Hira: TUP1-like enhan 90.6 1.3 2.8E-05 37.4 7.3 73 140-234 19-98 (219)
444 KOG4460 Nuclear pore complex, 90.5 12 0.00027 35.4 13.7 79 340-420 105-204 (741)
445 PLN02193 nitrile-specifier pro 90.5 13 0.00029 35.7 15.1 63 352-417 330-413 (470)
446 COG5276 Uncharacterized conser 90.5 11 0.00024 32.8 20.4 157 243-417 86-244 (370)
447 KOG1900 Nuclear pore complex, 90.4 6.3 0.00014 41.5 13.0 163 247-417 82-275 (1311)
448 PLN00033 photosystem II stabil 90.3 15 0.00033 34.2 17.1 153 246-411 241-396 (398)
449 KOG1916 Nuclear protein, conta 90.3 0.05 1.1E-06 53.5 -1.4 70 203-275 186-266 (1283)
450 PF07676 PD40: WD40-like Beta 90.1 1.9 4.1E-05 24.6 5.7 29 383-411 8-38 (39)
451 PF08728 CRT10: CRT10; InterP 89.9 5.7 0.00012 39.6 11.9 114 298-413 113-245 (717)
452 PF07995 GSDH: Glucose / Sorbo 89.8 15 0.00033 33.4 20.7 71 287-364 253-330 (331)
453 TIGR02276 beta_rpt_yvtn 40-res 89.6 2.1 4.7E-05 24.7 5.8 32 210-241 1-32 (42)
454 PF12657 TFIIIC_delta: Transcr 89.3 3.9 8.5E-05 33.1 9.0 32 201-232 86-122 (173)
455 PF02333 Phytase: Phytase; In 89.2 18 0.00039 33.3 20.9 197 213-416 68-292 (381)
456 PF11715 Nup160: Nucleoporin N 89.1 3.2 6.8E-05 40.9 9.9 95 141-239 156-256 (547)
457 TIGR03548 mutarot_permut cycli 89.1 16 0.00034 33.1 13.8 103 214-319 74-196 (323)
458 PF12768 Rax2: Cortical protei 89.0 8.3 0.00018 33.9 11.3 96 223-319 16-125 (281)
459 PF10214 Rrn6: RNA polymerase 88.6 32 0.0007 35.5 19.7 135 284-420 77-238 (765)
460 KOG2377 Uncharacterized conser 88.4 19 0.00041 33.6 13.1 143 264-416 41-187 (657)
461 COG4880 Secreted protein conta 87.9 22 0.00048 32.8 15.9 184 224-421 407-599 (603)
462 TIGR03548 mutarot_permut cycli 87.6 21 0.00046 32.2 16.6 23 352-374 173-199 (323)
463 KOG1983 Tomosyn and related SN 87.4 15 0.00033 38.8 13.7 33 199-232 34-66 (993)
464 COG3823 Glutamine cyclotransfe 87.2 16 0.00034 30.3 12.7 106 142-278 55-162 (262)
465 PF11635 Med16: Mediator compl 86.1 44 0.00096 34.4 16.5 68 200-269 259-345 (753)
466 TIGR03606 non_repeat_PQQ dehyd 85.3 32 0.00069 32.7 13.5 61 287-350 30-90 (454)
467 PF14761 HPS3_N: Hermansky-Pud 85.0 21 0.00046 29.7 13.3 101 215-319 30-165 (215)
468 KOG3616 Selective LIM binding 84.8 15 0.00033 36.3 11.2 23 140-162 23-45 (1636)
469 PF12657 TFIIIC_delta: Transcr 84.8 8.5 0.00018 31.1 8.6 32 287-318 86-122 (173)
470 KOG3616 Selective LIM binding 84.7 11 0.00024 37.3 10.2 69 243-316 14-82 (1636)
471 PF12768 Rax2: Cortical protei 84.6 24 0.00051 31.1 11.7 92 266-368 16-122 (281)
472 COG3823 Glutamine cyclotransfe 84.1 23 0.00049 29.4 14.8 102 214-319 57-160 (262)
473 PF03022 MRJP: Major royal jel 83.7 31 0.00068 30.6 18.6 174 224-402 35-253 (287)
474 PF10214 Rrn6: RNA polymerase 83.7 58 0.0013 33.7 22.8 171 241-416 77-278 (765)
475 PF14781 BBS2_N: Ciliary BBSom 82.9 19 0.00041 27.5 13.0 113 248-372 3-128 (136)
476 PF11715 Nup160: Nucleoporin N 82.2 6.1 0.00013 38.9 8.1 69 352-421 159-255 (547)
477 PLN02193 nitrile-specifier pro 82.0 50 0.0011 31.8 19.2 101 214-319 230-353 (470)
478 KOG1983 Tomosyn and related SN 81.8 65 0.0014 34.3 15.3 25 347-372 243-267 (993)
479 TIGR02276 beta_rpt_yvtn 40-res 81.6 2.8 6.1E-05 24.1 3.5 31 393-423 1-31 (42)
480 PRK13684 Ycf48-like protein; P 79.9 48 0.001 30.2 16.3 152 200-367 172-329 (334)
481 PF07676 PD40: WD40-like Beta 79.4 9.1 0.0002 21.6 5.6 30 242-271 7-38 (39)
482 TIGR03547 muta_rot_YjhT mutatr 79.0 51 0.0011 30.1 18.4 41 362-405 291-331 (346)
483 PRK13684 Ycf48-like protein; P 78.1 54 0.0012 29.8 26.2 156 243-413 172-330 (334)
484 PF01731 Arylesterase: Arylest 77.3 11 0.00023 26.3 5.7 32 384-415 54-85 (86)
485 KOG1900 Nuclear pore complex, 77.0 69 0.0015 34.4 13.3 146 219-370 95-273 (1311)
486 PRK14131 N-acetylneuraminic ac 76.9 63 0.0014 30.0 19.4 50 363-415 314-369 (376)
487 TIGR03606 non_repeat_PQQ dehyd 76.5 72 0.0016 30.4 14.1 54 243-297 29-89 (454)
488 PRK14131 N-acetylneuraminic ac 75.4 70 0.0015 29.7 12.9 18 215-232 42-59 (376)
489 PLN00033 photosystem II stabil 74.4 77 0.0017 29.7 17.6 147 203-366 241-396 (398)
490 PF09826 Beta_propel: Beta pro 73.1 97 0.0021 30.3 19.7 180 223-416 304-520 (521)
491 PF03088 Str_synth: Strictosid 73.0 13 0.00029 26.1 5.3 54 357-413 33-86 (89)
492 PF14761 HPS3_N: Hermansky-Pud 72.8 33 0.00071 28.6 8.3 51 352-404 29-79 (215)
493 PF02333 Phytase: Phytase; In 72.3 82 0.0018 29.2 21.0 197 140-371 65-292 (381)
494 PF14781 BBS2_N: Ciliary BBSom 72.2 41 0.0009 25.7 12.4 118 293-419 5-130 (136)
495 TIGR03074 PQQ_membr_DH membran 72.1 1.3E+02 0.0027 31.2 22.2 65 214-280 261-350 (764)
496 PF07250 Glyoxal_oxid_N: Glyox 70.0 71 0.0015 27.5 11.7 140 225-372 48-200 (243)
497 KOG2377 Uncharacterized conser 69.7 1E+02 0.0022 29.1 18.7 116 199-318 65-186 (657)
498 KOG1896 mRNA cleavage and poly 67.2 1.2E+02 0.0027 32.3 12.4 151 144-314 1047-1210(1366)
499 PF08801 Nucleoporin_N: Nup133 67.2 1.2E+02 0.0025 28.8 14.2 30 385-415 191-220 (422)
500 PF12341 DUF3639: Protein of u 66.3 17 0.00037 18.9 3.6 26 201-229 2-27 (27)
No 1
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-50 Score=342.10 Aligned_cols=367 Identities=46% Similarity=0.842 Sum_probs=325.6
Q ss_pred ceeeccccccceeccCCCCCCcccCCCCCC-ccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeccc
Q 013827 43 GVEIFGKGLGDLYYASNQMDPYLKDKDDED-SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHI 121 (436)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 121 (436)
..++|+++.+..||..++.|||++.+.++. +++...+.+-|+++++++|..+.+.+.+.+|+|+.... ++|.||+.
T Consensus 94 ~~~~f~s~~g~~~y~sne~DPYvt~~d~e~deee~de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~---nlYvHHD~ 170 (463)
T KOG0270|consen 94 EIELFSSLLGIAVYPSNEKDPYVTIPDDEDDEEEKDEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEE---NLYVHHDF 170 (463)
T ss_pred cccccccccCceeccCCCCCCccccCCcccchhhcccceeccCCcEEEEeeccCCceEEEEEEEcCCCc---ceeEecce
Confidence 468999999999999999999999976654 44588999999999999999999999999999998887 99999999
Q ss_pred ccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCccc
Q 013827 122 IIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD 201 (436)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 201 (436)
.++.+|+|++|+.+...-...|+++|.|+.|..|.|||++-...+.|...++...... +.+..+....-.+|++
T Consensus 171 ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~------~~k~~k~~~~~~gHTd 244 (463)
T KOG0270|consen 171 ILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKK------KKKKGKRSNSASGHTD 244 (463)
T ss_pred eccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhh------hhhhcccccccccchH
Confidence 9999999999998865556679999999999999999999999998888887433211 1122224444568999
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccc
Q 013827 202 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF 281 (436)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 281 (436)
.|.+++|+..-++.||||+.|.+|++||+.++++..++..|...|.++.|+|..+.+|++|+.|+++.+.|.|.......
T Consensus 245 avl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~ 324 (463)
T KOG0270|consen 245 AVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK 324 (463)
T ss_pred HHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc
Confidence 99999999988899999999999999999999999999999999999999999989999999999999999998777777
Q ss_pred eEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCC
Q 013827 282 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK 361 (436)
Q Consensus 282 ~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~ 361 (436)
.+...+.|..++|+|..+..++++..||+|+-+|+|+. .+++.+++.|..+|.++.+++..+.++++++.|+
T Consensus 325 ~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~--------~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~ 396 (463)
T KOG0270|consen 325 EWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP--------GKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK 396 (463)
T ss_pred eEEeccceEEEEecCCCceeEEEecCCceEEeeecCCC--------CCceeEEEeccCCcceEEecCCCCcceeeccccc
Confidence 88999999999999999999999999999999999987 4889999999999999999999999999999999
Q ss_pred cEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccCC
Q 013827 362 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 426 (436)
Q Consensus 362 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (436)
.|++|++....+..+....-..+...|+++.|+-.++++.|+..+.++|||+.+...+.+.|+..
T Consensus 397 ~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~kaF~~~ 461 (463)
T KOG0270|consen 397 VVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKAFGSR 461 (463)
T ss_pred eEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHHhhccc
Confidence 99999998776545544444455688899999998899999999999999999999998888765
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-51 Score=341.57 Aligned_cols=333 Identities=22% Similarity=0.303 Sum_probs=282.4
Q ss_pred chhhhhhHHHHHHHhhcccceeeec-----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccce
Q 013827 6 SHCVNSRLEEILRLYHSCFRCHKIS-----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMT 80 (436)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 80 (436)
++| .+.+..|-..+.|..++|+++ +.|.|+|+||+..... ..+ ..+|...|.+++
T Consensus 105 trC-ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp-----------------~~t--~KgH~~WVlcva 164 (480)
T KOG0271|consen 105 TRC-SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP-----------------LFT--CKGHKNWVLCVA 164 (480)
T ss_pred cee-ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc-----------------cee--ecCCccEEEEEE
Confidence 567 566777777888999999777 9999999998865443 222 247999999999
Q ss_pred eccCCceEEEEEecCCcceeEEEEEecCCCCCC-ceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEe
Q 013827 81 INPNDAVIVCARNEDDVSHLEVYILEESDGGDP-NLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWD 159 (436)
Q Consensus 81 ~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~ 159 (436)
|+|||+.||+|+.++ .|.+|+...+... ..+..|... .++++|-+. .-.|..++||+++.||.|+|||
T Consensus 165 wsPDgk~iASG~~dg-----~I~lwdpktg~~~g~~l~gH~K~----It~Lawep~--hl~p~~r~las~skDg~vrIWd 233 (480)
T KOG0271|consen 165 WSPDGKKIASGSKDG-----SIRLWDPKTGQQIGRALRGHKKW----ITALAWEPL--HLVPPCRRLASSSKDGSVRIWD 233 (480)
T ss_pred ECCCcchhhccccCC-----eEEEecCCCCCcccccccCcccc----eeEEeeccc--ccCCCccceecccCCCCEEEEE
Confidence 999999999999998 8888886665321 223334333 367888443 3367888999999999999999
Q ss_pred CCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEE
Q 013827 160 LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL 239 (436)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 239 (436)
+..+.++. .+.+|+.+|+|+.|--+ .++++|+.|++|++|+...|++.+.+
T Consensus 234 ~~~~~~~~---------------------------~lsgHT~~VTCvrwGG~--gliySgS~DrtIkvw~a~dG~~~r~l 284 (480)
T KOG0271|consen 234 TKLGTCVR---------------------------TLSGHTASVTCVRWGGE--GLIYSGSQDRTIKVWRALDGKLCREL 284 (480)
T ss_pred ccCceEEE---------------------------EeccCccceEEEEEcCC--ceEEecCCCceEEEEEccchhHHHhh
Confidence 97644443 36699999999999866 49999999999999999999999999
Q ss_pred cccCCCeEEEEEc-----------CCC------------------------CCEEEEEECCCcEEEEecCCCC-CccceE
Q 013827 240 EHHTDKVQAVAWN-----------HHS------------------------PQILLSGSFDRSVVMKDARIST-HSGFKW 283 (436)
Q Consensus 240 ~~~~~~v~~~~~~-----------~~~------------------------~~~l~s~~~d~~i~~wd~~~~~-~~~~~~ 283 (436)
++|...|+.++.+ |.+ +..+++|+.|.++.+|+....+ ++....
T Consensus 285 kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt 364 (480)
T KOG0271|consen 285 KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT 364 (480)
T ss_pred cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhh
Confidence 9999999999887 222 1359999999999999987655 556677
Q ss_pred eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcE
Q 013827 284 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 363 (436)
Q Consensus 284 ~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i 363 (436)
+|..-|+.+.|+|++ .++++++.|..|++||.+++ +.+.++.+|-..|..++|+.|. ++|++|+.|.++
T Consensus 365 gHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tG---------k~lasfRGHv~~VYqvawsaDs-RLlVS~SkDsTL 433 (480)
T KOG0271|consen 365 GHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTG---------KFLASFRGHVAAVYQVAWSADS-RLLVSGSKDSTL 433 (480)
T ss_pred chhhheeeEEECCCc-cEEEEeecccceeeeeCCCc---------chhhhhhhccceeEEEEeccCc-cEEEEcCCCceE
Confidence 899999999999988 79999999999999999998 7789999999999999999998 999999999999
Q ss_pred EEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 013827 364 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 364 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 412 (436)
++||+++.+ ....+++|...|.++.|+|||. .+++|+.|..+++|.
T Consensus 434 Kvw~V~tkK--l~~DLpGh~DEVf~vDwspDG~-rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 434 KVWDVRTKK--LKQDLPGHADEVFAVDWSPDGQ-RVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEeeeee--ecccCCCCCceEEEEEecCCCc-eeecCCCceEEEeec
Confidence 999999987 5678899999999999999999 699999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5e-49 Score=329.23 Aligned_cols=302 Identities=26% Similarity=0.374 Sum_probs=263.4
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
.+|.+.|.+++|+|+|..|++|+.|. .+.+|+..+.........|. ..++|++| +|||+.||+|
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~-----TvR~WD~~TeTp~~t~KgH~----~WVlcvaw-------sPDgk~iASG 175 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDT-----TVRLWDLDTETPLFTCKGHK----NWVLCVAW-------SPDGKKIASG 175 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCc-----eEEeeccCCCCcceeecCCc----cEEEEEEE-------CCCcchhhcc
Confidence 58999999999999999999999886 77777766653333334443 45689999 9999999999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCC----CCcEEEEEeCCCcE
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE----FRNILASASADKQV 225 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~l~s~~~dg~v 225 (436)
+.||+|++||..+++.... .+.+|...|++++|.|- +..+||+++.||+|
T Consensus 176 ~~dg~I~lwdpktg~~~g~--------------------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~v 229 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQQIGR--------------------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSV 229 (480)
T ss_pred ccCCeEEEecCCCCCcccc--------------------------cccCcccceeEEeecccccCCCccceecccCCCCE
Confidence 9999999999987766543 36799999999999763 12389999999999
Q ss_pred EEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeC----------
Q 013827 226 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD---------- 295 (436)
Q Consensus 226 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~---------- 295 (436)
+|||+..++++..+.+|+.+|+|+.|--+| ++++|+.|++|++|+...+.....+.+|...|+.++.+
T Consensus 230 rIWd~~~~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf 307 (480)
T KOG0271|consen 230 RIWDTKLGTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAF 307 (480)
T ss_pred EEEEccCceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccc
Confidence 999999999999999999999999997665 89999999999999999988888888999999988877
Q ss_pred -CCC------------------------CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC
Q 013827 296 -PHA------------------------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 350 (436)
Q Consensus 296 -~~~------------------------~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 350 (436)
|.+ +..+++|++|.++.+|+.... .+++..+.+|..-|+.+.|+||+
T Consensus 308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~--------kkpi~rmtgHq~lVn~V~fSPd~ 379 (480)
T KOG0271|consen 308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS--------KKPITRMTGHQALVNHVSFSPDG 379 (480)
T ss_pred ccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc--------ccchhhhhchhhheeeEEECCCc
Confidence 222 236999999999999998766 36788899999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccCCC
Q 013827 351 PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 427 (436)
Q Consensus 351 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (436)
+++|+++.|..|++||.++++ .+..+.+|.++|+.++|+.|.+ +|++|+.|.++++|++++.+....+.++.+
T Consensus 380 -r~IASaSFDkSVkLW~g~tGk--~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkKl~~DLpGh~D 452 (480)
T KOG0271|consen 380 -RYIASASFDKSVKLWDGRTGK--FLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKKLKQDLPGHAD 452 (480)
T ss_pred -cEEEEeecccceeeeeCCCcc--hhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeeeecccCCCCCc
Confidence 999999999999999999998 6788999999999999999999 799999999999999999998887776654
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.7e-46 Score=315.86 Aligned_cols=284 Identities=20% Similarity=0.290 Sum_probs=256.0
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCC--CcEEEE
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK--GNFMAV 148 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~ 148 (436)
+.+.+|..+.||+|+..||+|+.++ .+.+|+.........+..|...+ .++.| +|. +.-||+
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG-----~~kvW~~~~~~~~~~l~gH~~~v----~~~~f-------hP~~~~~~lat 236 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSG-----LVKVWSVPQCNLLQTLRGHTSRV----GAAVF-------HPVDSDLNLAT 236 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCC-----ceeEeecCCcceeEEEeccccce----eeEEE-------ccCCCccceee
Confidence 5677899999999999999999998 77788777765556666775444 45666 665 678999
Q ss_pred eeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEE
Q 013827 149 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 228 (436)
Q Consensus 149 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vw 228 (436)
|+.||++++|++++...+. .+.+|...|..++|+|+| .+|+|++.|.+-++|
T Consensus 237 ~s~Dgtvklw~~~~e~~l~---------------------------~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlW 288 (459)
T KOG0272|consen 237 ASADGTVKLWKLSQETPLQ---------------------------DLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLW 288 (459)
T ss_pred eccCCceeeeccCCCcchh---------------------------hhhcchhhheeeeecCCC-ceeeecccccchhhc
Confidence 9999999999998654443 377999999999999998 599999999999999
Q ss_pred eCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCC
Q 013827 229 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED 308 (436)
Q Consensus 229 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d 308 (436)
|++++..+....+|...|.+++|.++| .++++|+.|..-+|||+|++.++..+.+|..+|.+|+|+|+| +.+++|+.|
T Consensus 289 D~~tk~ElL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNG-y~lATgs~D 366 (459)
T KOG0272|consen 289 DLETKSELLLQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNG-YHLATGSSD 366 (459)
T ss_pred ccccchhhHhhcccccccceeEecCCC-ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCc-eEEeecCCC
Confidence 999998888889999999999999999 999999999999999999999999999999999999999988 799999999
Q ss_pred CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEE
Q 013827 309 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS 388 (436)
Q Consensus 309 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 388 (436)
++++|||++.. ..+..+.+|..-|+.+.|+|..+.+|+|++.|++++||..++.+ ++..+.+|.+.|.+
T Consensus 367 nt~kVWDLR~r---------~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~--~~ksLaGHe~kV~s 435 (459)
T KOG0272|consen 367 NTCKVWDLRMR---------SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS--PLKSLAGHEGKVIS 435 (459)
T ss_pred CcEEEeeeccc---------ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc--cchhhcCCccceEE
Confidence 99999999987 66899999999999999999666999999999999999999888 67788999999999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEe
Q 013827 389 VAFSEDSPFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 389 ~~~~~~~~~~l~s~~~dg~i~iwd 412 (436)
+..++|+.+ +++++.|.++++|.
T Consensus 436 ~Dis~d~~~-i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 436 LDISPDSQA-IATSSFDRTIKLWR 458 (459)
T ss_pred EEeccCCce-EEEeccCceeeecc
Confidence 999999995 99999999999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.3e-43 Score=282.98 Aligned_cols=290 Identities=19% Similarity=0.326 Sum_probs=249.8
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
.+|...|.+|.|++|.++|++++.++ ++.+|+.-+. + ....+|+...|+ +.++|+|.|+++|+|
T Consensus 52 kGH~~Ki~~~~ws~Dsr~ivSaSqDG-----klIvWDs~Tt---n-------K~haipl~s~WV-MtCA~sPSg~~VAcG 115 (343)
T KOG0286|consen 52 KGHLNKIYAMDWSTDSRRIVSASQDG-----KLIVWDSFTT---N-------KVHAIPLPSSWV-MTCAYSPSGNFVACG 115 (343)
T ss_pred cccccceeeeEecCCcCeEEeeccCC-----eEEEEEcccc---c-------ceeEEecCceeE-EEEEECCCCCeEEec
Confidence 58899999999999999999999998 8888887664 1 122334455664 556779999999999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+.|....||++.+.+... ..+....+.+|.+.+.|+.|.+| ..|++++.|.+..+||
T Consensus 116 GLdN~Csiy~ls~~d~~g---------------------~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWD 172 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEG---------------------NVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWD 172 (343)
T ss_pred CcCceeEEEecccccccc---------------------cceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEE
Confidence 999999999998542221 12333447799999999999997 3799999999999999
Q ss_pred CCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCC
Q 013827 230 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG 309 (436)
Q Consensus 230 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg 309 (436)
+++++.+..|.+|.+.|.+++++|...+.+++|+.|+..++||+|.+...+.+.+|...|+++.|.|+| .-+++|++|+
T Consensus 173 ie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G-~afatGSDD~ 251 (343)
T KOG0286|consen 173 IETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSG-DAFATGSDDA 251 (343)
T ss_pred cccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCC-CeeeecCCCc
Confidence 999999999999999999999999444999999999999999999999999999999999999999988 6899999999
Q ss_pred cEEEEeCCCCCCCCCCCCCcccEEE--eccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEE
Q 013827 310 TIKGFDIRTAKSDPDSTSQQSSFTL--HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF 387 (436)
Q Consensus 310 ~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 387 (436)
+.++||+|... .+..+ ..-..+|++++|+..| ++|.+|..|.++.+||.-.++ .+..+.+|...|.
T Consensus 252 tcRlyDlRaD~---------~~a~ys~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e--~vg~L~GHeNRvS 319 (343)
T KOG0286|consen 252 TCRLYDLRADQ---------ELAVYSHDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGE--RVGVLAGHENRVS 319 (343)
T ss_pred eeEEEeecCCc---------EEeeeccCcccCCceeEEEcccc-cEEEeeecCCceeEeeccccc--eEEEeeccCCeeE
Confidence 99999999973 23333 3344689999999999 999999999999999998877 5667789999999
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEe
Q 013827 388 SVAFSEDSPFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 388 ~~~~~~~~~~~l~s~~~dg~i~iwd 412 (436)
++..+|||. .+++|+.|.+++||.
T Consensus 320 cl~~s~DG~-av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 320 CLGVSPDGM-AVATGSWDSTLRIWA 343 (343)
T ss_pred EEEECCCCc-EEEecchhHheeecC
Confidence 999999998 699999999999994
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-43 Score=300.83 Aligned_cols=250 Identities=23% Similarity=0.304 Sum_probs=231.0
Q ss_pred CCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCC-CCcEE
Q 013827 138 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNIL 216 (436)
Q Consensus 138 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l 216 (436)
.|+.|++.||||+.+|.++||+..+... ...+.+|...|.++.|+|. ...-+
T Consensus 182 ~fS~ds~~laT~swsG~~kvW~~~~~~~---------------------------~~~l~gH~~~v~~~~fhP~~~~~~l 234 (459)
T KOG0272|consen 182 SFSRDSKHLATGSWSGLVKVWSVPQCNL---------------------------LQTLRGHTSRVGAAVFHPVDSDLNL 234 (459)
T ss_pred EeecCCCeEEEeecCCceeEeecCCcce---------------------------eEEEeccccceeeEEEccCCCccce
Confidence 3589999999999999999999976433 3347799999999999998 35689
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCC
Q 013827 217 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 296 (436)
Q Consensus 217 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~ 296 (436)
|||+.||++++|++.+..++..+.+|...|..++|+|+| .+|++++.|.+-++||+++........+|...|.+++|+|
T Consensus 235 at~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~ 313 (459)
T KOG0272|consen 235 ATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP 313 (459)
T ss_pred eeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHhhcccccccceeEecC
Confidence 999999999999999999999999999999999999999 9999999999999999999999988899999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeE
Q 013827 297 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 376 (436)
Q Consensus 297 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 376 (436)
+| .++++|+.|..-+|||+|++ ..+..+.+|..+|.+++|+|+| ..||||+.|++++|||++..+ .+
T Consensus 314 DG-SL~~tGGlD~~~RvWDlRtg---------r~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~--~l 380 (459)
T KOG0272|consen 314 DG-SLAATGGLDSLGRVWDLRTG---------RCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRS--EL 380 (459)
T ss_pred CC-ceeeccCccchhheeecccC---------cEEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeecccc--cc
Confidence 98 69999999999999999999 7789999999999999999999 999999999999999999887 58
Q ss_pred EeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccCCCC
Q 013827 377 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 428 (436)
Q Consensus 377 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 428 (436)
...++|..-|+.++|+|...++|+|++.|++++||...+.++++.+.++..+
T Consensus 381 y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~k 432 (459)
T KOG0272|consen 381 YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGK 432 (459)
T ss_pred eecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccc
Confidence 8889999999999999955557999999999999999999999988877654
No 7
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.6e-41 Score=284.42 Aligned_cols=285 Identities=22% Similarity=0.388 Sum_probs=244.3
Q ss_pred ccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCC
Q 013827 73 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME 152 (436)
Q Consensus 73 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 152 (436)
.-.|..+.|.|+|+.|++|+..+ .+.+|+...-....+...|+.++ .++.| +++|.++++|..+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SG-----EFtLWNg~~fnFEtilQaHDs~V----r~m~w-------s~~g~wmiSgD~g 159 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSG-----EFTLWNGTSFNFETILQAHDSPV----RTMKW-------SHNGTWMISGDKG 159 (464)
T ss_pred ccceeeEEEcCCCceeEeecccc-----cEEEecCceeeHHHHhhhhcccc----eeEEE-------ccCCCEEEEcCCC
Confidence 44689999999999999999988 55555543332224455565444 57778 8999999999999
Q ss_pred CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 153 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 232 (436)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~ 232 (436)
|.|++|+.+-.. +......|...|++++|+|++ ..+++|+.||+|+|||...
T Consensus 160 G~iKyWqpnmnn---------------------------Vk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 160 GMIKYWQPNMNN---------------------------VKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred ceEEecccchhh---------------------------hHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccC
Confidence 999999975211 111123456999999999985 6999999999999999998
Q ss_pred CeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEE
Q 013827 233 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 312 (436)
Q Consensus 233 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~ 312 (436)
.+....+.+|.-.|.+++|+|.. .++++++.|..|++||.+++.++.....|+..|..+.|+|++ ++|++++.|..++
T Consensus 212 ~kee~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~k 289 (464)
T KOG0284|consen 212 PKEERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCK 289 (464)
T ss_pred CchhheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEE
Confidence 88888899999999999999998 899999999999999999999999999999999999999988 8999999999999
Q ss_pred EEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEc
Q 013827 313 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 392 (436)
Q Consensus 313 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 392 (436)
+||+++. +.++.+.+|...++++.|+|-.+.+|.+|+.||.|..|.+...++.. ....+|...|++++|+
T Consensus 290 v~DiR~m---------kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~-~i~~AHd~~iwsl~~h 359 (464)
T KOG0284|consen 290 VFDIRTM---------KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG-EIPPAHDGEIWSLAYH 359 (464)
T ss_pred EEehhHh---------HHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccccc-CCCcccccceeeeecc
Confidence 9999976 66889999999999999999988999999999999999998655422 2345789999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCC
Q 013827 393 EDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 393 ~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
|-|- +|++|+.|.++++|.-.
T Consensus 360 PlGh-il~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 360 PLGH-ILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccce-eEeecCCCcceeeeccC
Confidence 9997 89999999999999764
No 8
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.5e-39 Score=275.15 Aligned_cols=331 Identities=19% Similarity=0.313 Sum_probs=269.6
Q ss_pred HHHHhhcccceeeec------cCCCCcceeeecceeeccccccceeccCCCCCCcc--cCCCCCCccccccceeccCCce
Q 013827 16 ILRLYHSCFRCHKIS------NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYL--KDKDDEDSEDLEDMTINPNDAV 87 (436)
Q Consensus 16 ~~~~~~~~~~~~~~~------~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~ 87 (436)
+-..+++|.|.|-.. +.|-|+|+|++.+..-....+. +..... .........+|++++|+.+|.+
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~-------~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~ 249 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQL-------VLRHCIREGGKSVPSNKDVTSLDWNNDGTL 249 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhh-------hhhhhhhhhcccCCccCCcceEEecCCCCe
Confidence 455789999998544 8899999999976211110000 000000 0122244578999999999999
Q ss_pred EEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCc
Q 013827 88 IVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQ 167 (436)
Q Consensus 88 l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~ 167 (436)
||+|..++ .+.+|+.... ....+..|..++ +.+.| +.+|+||++++.||++.+||..+++..+
T Consensus 250 LatG~~~G-----~~riw~~~G~-l~~tl~~HkgPI----~slKW-------nk~G~yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 250 LATGSEDG-----EARIWNKDGN-LISTLGQHKGPI----FSLKW-------NKKGTYILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred EEEeecCc-----EEEEEecCch-hhhhhhccCCce----EEEEE-------cCCCCEEEeccCCccEEEEeccCceEEE
Confidence 99999987 7788877654 223344454443 67777 8999999999999999999997665544
Q ss_pred ceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeE
Q 013827 168 PHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ 247 (436)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~ 247 (436)
. +.-|..+-..+.|-.+ ..+++++.|+.|+|+.+...+++.++.+|.++|.
T Consensus 313 ~---------------------------f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~ 363 (524)
T KOG0273|consen 313 Q---------------------------FEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVN 363 (524)
T ss_pred e---------------------------eeeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcceeeecccCceE
Confidence 3 3347777788999877 3799999999999999999999999999999999
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCC--------cEEEEEeCCCcEEEEeCCCC
Q 013827 248 AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE--------HSFVVSLEDGTIKGFDIRTA 319 (436)
Q Consensus 248 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~~dg~i~i~d~~~~ 319 (436)
++.|+|.+ .+|++++.|+++++|.+........+..|...|..+.|+|.++ ..+++++.|++|++||+..+
T Consensus 364 alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g 442 (524)
T KOG0273|consen 364 ALKWNPTG-SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG 442 (524)
T ss_pred EEEECCCC-ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC
Confidence 99999999 9999999999999999998888888889999999999999753 47899999999999999988
Q ss_pred CCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEE
Q 013827 320 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVL 399 (436)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 399 (436)
.++..+..|+.+|.+++|+|++ .++|+|+.||.|.+|+.++++ .+.... ..+.|..++|+.+|.+ |
T Consensus 443 ---------v~i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~~--l~~s~~-~~~~Ifel~Wn~~G~k-l 508 (524)
T KOG0273|consen 443 ---------VPIHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTGK--LVKSYQ-GTGGIFELCWNAAGDK-L 508 (524)
T ss_pred ---------ceeEeeccCCCceEEEEecCCC-cEEEecCCCCeeEeccccchh--eeEeec-CCCeEEEEEEcCCCCE-E
Confidence 7899999999999999999999 999999999999999999998 344444 3557999999999985 7
Q ss_pred EEEeCCCcEEEEeCC
Q 013827 400 AIGGSKGKLEIWDTL 414 (436)
Q Consensus 400 ~s~~~dg~i~iwd~~ 414 (436)
..+-.|+.+++-|+.
T Consensus 509 ~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 509 GACASDGSVCVLDLR 523 (524)
T ss_pred EEEecCCCceEEEec
Confidence 778889999999875
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1e-38 Score=252.93 Aligned_cols=290 Identities=18% Similarity=0.251 Sum_probs=240.5
Q ss_pred ceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCC
Q 013827 86 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDE 165 (436)
Q Consensus 86 ~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~ 165 (436)
-+|++++.|. .|..|+...+.......|.+..+.. ++- .|+++.||+++ .-.||+||+++...
T Consensus 11 viLvsA~YDh-----TIRfWqa~tG~C~rTiqh~dsqVNr----Lei-------Tpdk~~LAaa~-~qhvRlyD~~S~np 73 (311)
T KOG0315|consen 11 VILVSAGYDH-----TIRFWQALTGICSRTIQHPDSQVNR----LEI-------TPDKKDLAAAG-NQHVRLYDLNSNNP 73 (311)
T ss_pred eEEEeccCcc-----eeeeeehhcCeEEEEEecCccceee----EEE-------cCCcchhhhcc-CCeeEEEEccCCCC
Confidence 4777777775 8889988887655555555444322 222 79999999987 56899999987554
Q ss_pred CcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCC
Q 013827 166 VQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDK 245 (436)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~ 245 (436)
. ++..+.+|...|+++.|..+| ..+++|++||+++|||++...+.+.++ |.++
T Consensus 74 ~-------------------------Pv~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~~qR~~~-~~sp 126 (311)
T KOG0315|consen 74 N-------------------------PVATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSP 126 (311)
T ss_pred C-------------------------ceeEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCcccchhcc-CCCC
Confidence 3 344577899999999999997 599999999999999999977766666 7799
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE-eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCC
Q 013827 246 VQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD 324 (436)
Q Consensus 246 v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~ 324 (436)
|+++..+|+. ..|++|..+|.|++||+.......... .....+.++...|+| ..++.+...|..++|++-....
T Consensus 127 Vn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~--- 201 (311)
T KOG0315|consen 127 VNTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQT--- 201 (311)
T ss_pred cceEEecCCc-ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCc---
Confidence 9999999998 789999999999999999876554333 345679999999998 5888899999999999977432
Q ss_pred CCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeC
Q 013827 325 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS 404 (436)
Q Consensus 325 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 404 (436)
.....++..++.|.+.+..+.++|++ .+||+++.|.+++||+..+. ......+.+|...++.++||.||+| |++++.
T Consensus 202 ~s~l~P~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~Y-lvTass 278 (311)
T KOG0315|consen 202 ASELEPVHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEY-LVTASS 278 (311)
T ss_pred cccceEhhheecccceEEEEEECCCC-cEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccE-EEecCC
Confidence 22356788899999999999999999 99999999999999999987 4466778899999999999999997 999999
Q ss_pred CCcEEEEeCCCCccccccccCCC
Q 013827 405 KGKLEIWDTLSDAGISNRFSKYS 427 (436)
Q Consensus 405 dg~i~iwd~~~~~~~~~~~~~~~ 427 (436)
|+.+++|++..++.++..-++..
T Consensus 279 d~~~rlW~~~~~k~v~qy~gh~K 301 (311)
T KOG0315|consen 279 DHTARLWDLSAGKEVRQYQGHHK 301 (311)
T ss_pred CCceeecccccCceeeecCCccc
Confidence 99999999999998877655543
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.9e-39 Score=293.85 Aligned_cols=265 Identities=22% Similarity=0.406 Sum_probs=224.9
Q ss_pred CCCCCcEEEEeeCCCcEEEEeCCCCCCC--cceeeecccc-hhhhh-hcccCCCcccccccccCcccceeEEEecCCCCc
Q 013827 139 DREKGNFMAVGSMEPAIEIWDLDVIDEV--QPHVILGGID-EEKKK-KKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN 214 (436)
Q Consensus 139 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~--~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 214 (436)
|++|+++||.|-.|..|++|.+...+.. .....+...+ ..++. ..............+.+|.++|....|+|+ +.
T Consensus 386 fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd-~r 464 (707)
T KOG0263|consen 386 FSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD-RR 464 (707)
T ss_pred ecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc-cc
Confidence 3999999999999999999999753211 1000000000 00000 111122333444458899999999999999 57
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEe
Q 013827 215 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW 294 (436)
Q Consensus 215 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~ 294 (436)
+|++++.|+++|+|.+.+..++..+++|..||+.+.|+|.| .+|++++.|++.++|......+...+.+|-+.+.|+.|
T Consensus 465 fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~F 543 (707)
T KOG0263|consen 465 FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSF 543 (707)
T ss_pred ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCchhhhcccccccceEEE
Confidence 99999999999999999999999999999999999999999 99999999999999999998888889999999999999
Q ss_pred CCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCce
Q 013827 295 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS 374 (436)
Q Consensus 295 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~ 374 (436)
+|+. .++++|+.|.++++||+.++ ..++.+.+|.++|++++|+|+| ++|++|+.||.|.+||+.++.
T Consensus 544 HPNs-~Y~aTGSsD~tVRlWDv~~G---------~~VRiF~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~-- 610 (707)
T KOG0263|consen 544 HPNS-NYVATGSSDRTVRLWDVSTG---------NSVRIFTGHKGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGS-- 610 (707)
T ss_pred CCcc-cccccCCCCceEEEEEcCCC---------cEEEEecCCCCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCc--
Confidence 9976 79999999999999999998 6689999999999999999999 999999999999999999988
Q ss_pred eEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccc
Q 013827 375 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 419 (436)
Q Consensus 375 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (436)
.+..+.+|.+.|.++.|+.+|. +||+|+.|.+|++||+..-...
T Consensus 611 ~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 611 LVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred chhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhccc
Confidence 5667788999999999999999 7999999999999999765443
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.8e-38 Score=272.75 Aligned_cols=299 Identities=23% Similarity=0.414 Sum_probs=250.5
Q ss_pred CCccccccceeccCCc-eEEEEEecCCcceeEEEEEecCCC-CCCcee-------eecccccCcCcceeecccCCCCCCC
Q 013827 71 EDSEDLEDMTINPNDA-VIVCARNEDDVSHLEVYILEESDG-GDPNLY-------VHHHIIIPAFPLCMAWLDCPLKDRE 141 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~-~l~~~~~~~~~~~~~v~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~ 141 (436)
.|+.+|...+|+|... +++++..+... ++|....... ....+. ..+..+...-++|++| +.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~a---ri~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W-------n~ 245 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTA---RIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW-------NN 245 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccce---eeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe-------cC
Confidence 4888999999999887 77777666433 3333221011 011111 1223333344678999 88
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 221 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 221 (436)
+|.+||+|+.||.+++|+.. ..+...+..|.++|.++.|+..| ++|++++.
T Consensus 246 ~G~~LatG~~~G~~riw~~~----------------------------G~l~~tl~~HkgPI~slKWnk~G-~yilS~~v 296 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNKD----------------------------GNLISTLGQHKGPIFSLKWNKKG-TYILSGGV 296 (524)
T ss_pred CCCeEEEeecCcEEEEEecC----------------------------chhhhhhhccCCceEEEEEcCCC-CEEEeccC
Confidence 99999999999999999986 33444477899999999999997 69999999
Q ss_pred CCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcE
Q 013827 222 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS 301 (436)
Q Consensus 222 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 301 (436)
|+++.+||..+++..+.+..|..+-..+.|-.+. -|++++.|+.|+++.+....+...+.+|.++|.++.|+|.+ .+
T Consensus 297 D~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg-~L 373 (524)
T KOG0273|consen 297 DGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG-SL 373 (524)
T ss_pred CccEEEEeccCceEEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC-ce
Confidence 9999999999999999999898887889997664 68999999999999999999998899999999999999988 69
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC--------CCEEEEEeCCCcEEEEECCCCCc
Q 013827 302 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV--------PNLLATGSTDKMVKLWDLSNNQP 373 (436)
Q Consensus 302 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--------~~~l~~~~~d~~i~iwd~~~~~~ 373 (436)
|+++++|++++||..... .....+..|...|..+.|+|.+ +..+++++.|++|++||+..+.
T Consensus 374 LaS~SdD~TlkiWs~~~~---------~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv- 443 (524)
T KOG0273|consen 374 LASCSDDGTLKIWSMGQS---------NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV- 443 (524)
T ss_pred EEEecCCCeeEeeecCCC---------cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc-
Confidence 999999999999998876 5678889999999999999975 2479999999999999999988
Q ss_pred eeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccc
Q 013827 374 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 423 (436)
Q Consensus 374 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (436)
++..+..|..+|.+++|+|+|+| +|+|+.||.|.+|+.+.++.++..-
T Consensus 444 -~i~~f~kH~~pVysvafS~~g~y-lAsGs~dg~V~iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 444 -PIHTLMKHQEPVYSVAFSPNGRY-LASGSLDGCVHIWSTKTGKLVKSYQ 491 (524)
T ss_pred -eeEeeccCCCceEEEEecCCCcE-EEecCCCCeeEeccccchheeEeec
Confidence 67778899999999999999996 9999999999999999998877643
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-37 Score=247.22 Aligned_cols=287 Identities=18% Similarity=0.314 Sum_probs=222.9
Q ss_pred CCCccccccceeccCCc-eEEEEEecCCcceeEEEEEecCCC-----CCCceeeecccccCcCcceeecccCCCCCCCCC
Q 013827 70 DEDSEDLEDMTINPNDA-VIVCARNEDDVSHLEVYILEESDG-----GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKG 143 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~-~l~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 143 (436)
+.|.+.|..++..+.++ +++.++.|. .+.+|+...+ .....+..|...+.... .++||
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk-----~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~-----------~s~dg 75 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDK-----TIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVV-----------LSSDG 75 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccce-----EEEEEEeccCccccCceeeeeeccceEecceE-----------EccCC
Confidence 47899999999999865 555555553 5556654332 22334445544443322 28999
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCC
Q 013827 144 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK 223 (436)
Q Consensus 144 ~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 223 (436)
++.++++.|+++++||+.+++..+ .|.+|...|.+++|+++. ..+++|+.|.
T Consensus 76 ~~alS~swD~~lrlWDl~~g~~t~---------------------------~f~GH~~dVlsva~s~dn-~qivSGSrDk 127 (315)
T KOG0279|consen 76 NFALSASWDGTLRLWDLATGESTR---------------------------RFVGHTKDVLSVAFSTDN-RQIVSGSRDK 127 (315)
T ss_pred ceEEeccccceEEEEEecCCcEEE---------------------------EEEecCCceEEEEecCCC-ceeecCCCcc
Confidence 999999999999999998764333 366999999999999996 5899999999
Q ss_pred cEEEEeCCCCeEEEEEccc--CCCeEEEEEcCCC-CCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCc
Q 013827 224 QVKIWDVAAGKCNLTLEHH--TDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 300 (436)
Q Consensus 224 ~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 300 (436)
+|++|++-... ..++..+ .+-|.|+.|+|+. ..+|++++.|++|++||+++.+......+|.+.++.++++||| .
T Consensus 128 Tiklwnt~g~c-k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDG-s 205 (315)
T KOG0279|consen 128 TIKLWNTLGVC-KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDG-S 205 (315)
T ss_pred eeeeeeecccE-EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCC-C
Confidence 99999987544 4444333 7899999999984 3789999999999999999999988899999999999999998 6
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeC
Q 013827 301 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 380 (436)
Q Consensus 301 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 380 (436)
+.++|+.||.+.+||++.+ +.++.+ .|...|.+++|+|+. ..|+.+ .+..|+|||+.+..........
T Consensus 206 lcasGgkdg~~~LwdL~~~---------k~lysl-~a~~~v~sl~fspnr-ywL~~a-t~~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 206 LCASGGKDGEAMLWDLNEG---------KNLYSL-EAFDIVNSLCFSPNR-YWLCAA-TATSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred EEecCCCCceEEEEEccCC---------ceeEec-cCCCeEeeEEecCCc-eeEeec-cCCceEEEeccchhhhhhcccc
Confidence 8999999999999999987 445544 578899999999976 455544 4556999999987632222221
Q ss_pred C--C-----CCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 381 P--K-----AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 381 ~--~-----~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
. . .-...+++|++||.. |.+|-.|+.|++|.+..
T Consensus 274 ~~g~s~~~~~~~clslaws~dG~t-Lf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 274 GIGPSSKAGDPICLSLAWSADGQT-LFAGYTDNVIRVWQVAK 314 (315)
T ss_pred ccccccccCCcEEEEEEEcCCCcE-EEeeecCCcEEEEEeec
Confidence 1 1 223567899999996 77799999999998753
No 13
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-38 Score=248.94 Aligned_cols=294 Identities=22% Similarity=0.311 Sum_probs=241.1
Q ss_pred cccceeccC-CceEEE--EEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCC-CCcEEEEeeC
Q 013827 76 LEDMTINPN-DAVIVC--ARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE-KGNFMAVGSM 151 (436)
Q Consensus 76 v~~~~~sp~-~~~l~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~ 151 (436)
=++++|||- .+.||+ +...+-.+..++++.+...........+. ....-.+.++| ++ ..+.+++++.
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~--d~~D~LfdV~W-------se~~e~~~~~a~G 81 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY--DTEDGLFDVAW-------SENHENQVIAASG 81 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee--ecccceeEeee-------cCCCcceEEEEec
Confidence 367899983 233333 33334445568888887633222222222 22333345667 44 4677889999
Q ss_pred CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCC
Q 013827 152 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 231 (436)
Q Consensus 152 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~ 231 (436)
||++++||+. .+..++..++.|..+|.++.|++..+..+++++.|++|++|+..
T Consensus 82 DGSLrl~d~~--------------------------~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~ 135 (311)
T KOG0277|consen 82 DGSLRLFDLT--------------------------MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN 135 (311)
T ss_pred CceEEEeccC--------------------------CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC
Confidence 9999999964 22345666888999999999999877788899999999999999
Q ss_pred CCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcE
Q 013827 232 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTI 311 (436)
Q Consensus 232 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i 311 (436)
.++.+.++.+|...|...+|+|..++++++++.|+++++||++..........|...+.++.|+....+++++|+.|+.|
T Consensus 136 r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~v 215 (311)
T KOG0277|consen 136 RPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLV 215 (311)
T ss_pred CCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceE
Confidence 99999999999999999999999889999999999999999998877777778889999999999888999999999999
Q ss_pred EEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEE
Q 013827 312 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 391 (436)
Q Consensus 312 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 391 (436)
+.||+++. ..++..+.+|.-.|..+.|+|....+|++++.|-+++|||...+.. .+.....|...+..+.|
T Consensus 216 r~wDir~~--------r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds-~~e~~~~HtEFv~g~Dw 286 (311)
T KOG0277|consen 216 RGWDIRNL--------RTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS-AIETVDHHTEFVCGLDW 286 (311)
T ss_pred EEEehhhc--------cccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh-hhhhhhccceEEecccc
Confidence 99999998 3778899999999999999998878999999999999999986542 45566778999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeC
Q 013827 392 SEDSPFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 392 ~~~~~~~l~s~~~dg~i~iwd~ 413 (436)
++-....+|+++.|+.++||+.
T Consensus 287 s~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 287 SLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccCceeeecccccceeeecc
Confidence 9977667999999999999984
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.1e-37 Score=248.79 Aligned_cols=253 Identities=22% Similarity=0.338 Sum_probs=226.5
Q ss_pred ceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEE
Q 013827 128 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 207 (436)
Q Consensus 128 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 207 (436)
.|+.| ++|.++|++++.||.+.|||..+...+..+. -....|..++
T Consensus 59 ~~~~w-------s~Dsr~ivSaSqDGklIvWDs~TtnK~haip---------------------------l~s~WVMtCA 104 (343)
T KOG0286|consen 59 YAMDW-------STDSRRIVSASQDGKLIVWDSFTTNKVHAIP---------------------------LPSSWVMTCA 104 (343)
T ss_pred eeeEe-------cCCcCeEEeeccCCeEEEEEcccccceeEEe---------------------------cCceeEEEEE
Confidence 57778 8999999999999999999988766554332 3567899999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCC------eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccc
Q 013827 208 WNKEFRNILASASADKQVKIWDVAAG------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF 281 (436)
Q Consensus 208 ~~~~~~~~l~s~~~dg~v~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 281 (436)
|+|.| +++|+|+.|+...||++.+. +..+.+.+|.+.+.++.|.+++ .|++++.|.+..+||++++.....
T Consensus 105 ~sPSg-~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~ 181 (343)
T KOG0286|consen 105 YSPSG-NFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQV 181 (343)
T ss_pred ECCCC-CeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEE
Confidence 99997 69999999999999999855 4566789999999999999865 699999999999999999999998
Q ss_pred eEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCC
Q 013827 282 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK 361 (436)
Q Consensus 282 ~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~ 361 (436)
+.+|.+.|.++++.|...+.+++|+.|+..++||+|.+ ...+.+.+|...|+++.|.|+| .-+++|++|+
T Consensus 182 f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~---------~c~qtF~ghesDINsv~ffP~G-~afatGSDD~ 251 (343)
T KOG0286|consen 182 FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG---------QCVQTFEGHESDINSVRFFPSG-DAFATGSDDA 251 (343)
T ss_pred ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc---------ceeEeecccccccceEEEccCC-CeeeecCCCc
Confidence 99999999999999966689999999999999999998 7799999999999999999999 8999999999
Q ss_pred cEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccCCCC
Q 013827 362 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 428 (436)
Q Consensus 362 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 428 (436)
+.++||++..+...++.......+|++++||..|+ +|.+|..|.++.+||...++.+..+.++..+
T Consensus 252 tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk~e~vg~L~GHeNR 317 (343)
T KOG0286|consen 252 TCRLYDLRADQELAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTLKGERVGVLAGHENR 317 (343)
T ss_pred eeEEEeecCCcEEeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeeccccceEEEeeccCCe
Confidence 99999999988767776666677899999999999 5777999999999999999998888776553
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8e-37 Score=246.15 Aligned_cols=249 Identities=24% Similarity=0.309 Sum_probs=214.2
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 221 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 221 (436)
+.+.+++++.|.++.+|++...+ .+...+...+.||...|..+..+++| ++.++++.
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd----------------------~~~G~~~r~~~GHsH~v~dv~~s~dg-~~alS~sw 83 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDD----------------------IKYGVPVRRLTGHSHFVSDVVLSSDG-NFALSASW 83 (315)
T ss_pred CCceEEEcccceEEEEEEeccCc----------------------cccCceeeeeeccceEecceEEccCC-ceEEeccc
Confidence 46789999999999999997542 23455667788999999999999997 69999999
Q ss_pred CCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEee-eCCeeEEEeCCCC-C
Q 013827 222 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-AADVESLAWDPHA-E 299 (436)
Q Consensus 222 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~i~~~~~~~~~-~ 299 (436)
|+++++||+.+++..+.|.+|...|.+++|+++. +.+++|+.|.+|.+|++............ ...|.++.|+|+. +
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~ 162 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESN 162 (315)
T ss_pred cceEEEEEecCCcEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCC
Confidence 9999999999999999999999999999999999 89999999999999999876554433332 6789999999974 4
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEee
Q 013827 300 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 379 (436)
Q Consensus 300 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 379 (436)
.++++++.|++|++||+++. +....+.+|++.++.++++||| .++++|+.||.+.+||++.++ .++.+
T Consensus 163 p~Ivs~s~DktvKvWnl~~~---------~l~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k--~lysl 230 (315)
T KOG0279|consen 163 PIIVSASWDKTVKVWNLRNC---------QLRTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGK--NLYSL 230 (315)
T ss_pred cEEEEccCCceEEEEccCCc---------chhhccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCc--eeEec
Confidence 68999999999999999987 6678889999999999999999 899999999999999999988 45554
Q ss_pred CCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccCCCCC
Q 013827 380 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP 429 (436)
Q Consensus 380 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 429 (436)
+|...|.+++|+|+.. .|+ ...+..|+|||+.++..+..+-....++
T Consensus 231 -~a~~~v~sl~fspnry-wL~-~at~~sIkIwdl~~~~~v~~l~~d~~g~ 277 (315)
T KOG0279|consen 231 -EAFDIVNSLCFSPNRY-WLC-AATATSIKIWDLESKAVVEELKLDGIGP 277 (315)
T ss_pred -cCCCeEeeEEecCCce-eEe-eccCCceEEEeccchhhhhhcccccccc
Confidence 4677999999999986 355 4455669999999999988776555554
No 16
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.4e-36 Score=245.78 Aligned_cols=289 Identities=17% Similarity=0.258 Sum_probs=242.9
Q ss_pred CCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCC-CceeeecccccCcCcceeecccCCCCCCCCCcEEE
Q 013827 69 DDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA 147 (436)
Q Consensus 69 ~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 147 (436)
..+|+++|+.+.|+|+|..||+|+.|. .|.+|+...+.+ .-....|.. .++-+.| .+|++.++
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr-----~I~LWnv~gdceN~~~lkgHsg----AVM~l~~-------~~d~s~i~ 106 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDR-----AIVLWNVYGDCENFWVLKGHSG----AVMELHG-------MRDGSHIL 106 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcc-----eEEEEeccccccceeeeccccc----eeEeeee-------ccCCCEEE
Confidence 357899999999999999999999997 888887544321 112223322 2234455 89999999
Q ss_pred EeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEE
Q 013827 148 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 227 (436)
Q Consensus 148 ~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~v 227 (436)
+++.|.+|+.||+++++.... +++|..-|+.+.-+.-|..++.+++.|+++++
T Consensus 107 S~gtDk~v~~wD~~tG~~~rk---------------------------~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl 159 (338)
T KOG0265|consen 107 SCGTDKTVRGWDAETGKRIRK---------------------------HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKL 159 (338)
T ss_pred EecCCceEEEEecccceeeeh---------------------------hccccceeeecCccccCCeEEEecCCCceEEE
Confidence 999999999999998777654 56899999999977777889999999999999
Q ss_pred EeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeC
Q 013827 228 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE 307 (436)
Q Consensus 228 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 307 (436)
||+++...++.+. ...+++++.|..++ ..+.+|+-|+.|++||++.........+|..+|+.+..+|+| ..+.+-+.
T Consensus 160 ~D~R~k~~~~t~~-~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~g-s~llsnsM 236 (338)
T KOG0265|consen 160 WDIRKKEAIKTFE-NKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYG-SFLLSNSM 236 (338)
T ss_pred Eeecccchhhccc-cceeEEEEEecccc-cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCC-Cccccccc
Confidence 9999988888875 46789999999988 789999999999999999999988899999999999999988 58999999
Q ss_pred CCcEEEEeCCCCCCCCCCCCCcccEEEeccC----CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCC
Q 013827 308 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD----KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA 383 (436)
Q Consensus 308 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 383 (436)
|.++++||++.... ...++..+.+|. ......+|+|++ ..+.+|+.|..+++||..... .++.+++|.
T Consensus 237 d~tvrvwd~rp~~p-----~~R~v~if~g~~hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~r~--~lyklpGh~ 308 (338)
T KOG0265|consen 237 DNTVRVWDVRPFAP-----SQRCVKIFQGHIHNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTSRR--ILYKLPGHY 308 (338)
T ss_pred cceEEEEEecccCC-----CCceEEEeecchhhhhhhcceeeccCCC-CccccccccceEEEeeccccc--EEEEcCCcc
Confidence 99999999987632 123355666554 345678999998 899999999999999998877 688899999
Q ss_pred CcEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 013827 384 GAVFSVAFSEDSPFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 384 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 412 (436)
+.|++++|+|..+ ++.+++.|.+|++=.
T Consensus 309 gsvn~~~Fhp~e~-iils~~sdk~i~lge 336 (338)
T KOG0265|consen 309 GSVNEVDFHPTEP-IILSCSSDKTIYLGE 336 (338)
T ss_pred eeEEEeeecCCCc-EEEEeccCceeEeec
Confidence 9999999999999 689999999998743
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.6e-37 Score=254.48 Aligned_cols=287 Identities=22% Similarity=0.377 Sum_probs=249.5
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
.+|...|..+-|+|+-.++++++.+. .+.+|+..+++....+..|...+ . .+.|+..|++||++
T Consensus 105 ~g~r~~vt~v~~hp~~~~v~~as~d~-----tikv~D~~tg~~e~~LrGHt~sv----~-------di~~~a~Gk~l~tc 168 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSEALVVSASEDA-----TIKVFDTETGELERSLRGHTDSV----F-------DISFDASGKYLATC 168 (406)
T ss_pred hccccceeeeeeccCceEEEEecCCc-----eEEEEEccchhhhhhhhccccce----e-------EEEEecCccEEEec
Confidence 46788899999999999999998775 66666666654434444443332 2 23337889999999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+.|-.+.+||.++. ...+..+.+|...|.++.|-|.| .++++++.|.+|+.|+
T Consensus 169 SsDl~~~LWd~~~~--------------------------~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We 221 (406)
T KOG0295|consen 169 SSDLSAKLWDFDTF--------------------------FRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWE 221 (406)
T ss_pred CCccchhheeHHHH--------------------------HHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEe
Confidence 99999999998741 22333356899999999999997 6999999999999999
Q ss_pred CCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCC------------
Q 013827 230 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH------------ 297 (436)
Q Consensus 230 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~------------ 297 (436)
+.++-++.++.+|..-|..++.+.|| .++++++.|.+|++|-+.+..+......|..++.+++|.|.
T Consensus 222 ~~tg~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~ 300 (406)
T KOG0295|consen 222 CDTGYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGS 300 (406)
T ss_pred cccceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCC
Confidence 99999999999999999999999999 99999999999999999999888888899999999999873
Q ss_pred --CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCcee
Q 013827 298 --AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 375 (436)
Q Consensus 298 --~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~ 375 (436)
+..++++++.|++|++||+.++ .++.++.+|...|..++|+|.| ++|+++.+|+++++||+++.+ +
T Consensus 301 ~~~~~~l~s~SrDktIk~wdv~tg---------~cL~tL~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~--c 368 (406)
T KOG0295|consen 301 TNGGQVLGSGSRDKTIKIWDVSTG---------MCLFTLVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQ--C 368 (406)
T ss_pred CCCccEEEeecccceEEEEeccCC---------eEEEEEecccceeeeeEEcCCC-eEEEEEecCCcEEEEEeccce--e
Confidence 2358999999999999999998 8899999999999999999988 999999999999999999988 7
Q ss_pred EEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 013827 376 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 376 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 413 (436)
....+.|...++++.|+.+..| +++|+-|.++++|.-
T Consensus 369 mk~~~ah~hfvt~lDfh~~~p~-VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 369 MKTLEAHEHFVTSLDFHKTAPY-VVTGSVDQTVKVWEC 405 (406)
T ss_pred eeccCCCcceeEEEecCCCCce-EEeccccceeeeeec
Confidence 7788899999999999999995 999999999999964
No 18
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-35 Score=258.66 Aligned_cols=324 Identities=16% Similarity=0.250 Sum_probs=249.2
Q ss_pred CCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEE
Q 013827 69 DDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV 148 (436)
Q Consensus 69 ~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 148 (436)
..+|...|+++.|+|||.++++++.|+ ++++|+...++....+.. ......-...+.| +||++.|++
T Consensus 186 ~r~HskFV~~VRysPDG~~Fat~gsDg-----ki~iyDGktge~vg~l~~-~~aHkGsIfalsW-------sPDs~~~~T 252 (603)
T KOG0318|consen 186 FREHSKFVNCVRYSPDGSRFATAGSDG-----KIYIYDGKTGEKVGELED-SDAHKGSIFALSW-------SPDSTQFLT 252 (603)
T ss_pred ccccccceeeEEECCCCCeEEEecCCc-----cEEEEcCCCccEEEEecC-CCCccccEEEEEE-------CCCCceEEE
Confidence 347889999999999999999999998 999999888743333331 2233344467777 999999999
Q ss_pred eeCCCcEEEEeCCCCCCCcceeeecccchhhh--hh--------------cccCCCcccccccccCcccceeEEEecCCC
Q 013827 149 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKK--KK--------------KSKKGKKSSIKYKKGSHTDSVLGLAWNKEF 212 (436)
Q Consensus 149 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~--~~--------------~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 212 (436)
++.|.+++|||+.+.+.+.....-...+..+. .+ .-.......+...+.||...|+++..+|++
T Consensus 253 ~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~ 332 (603)
T KOG0318|consen 253 VSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG 332 (603)
T ss_pred ecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC
Confidence 99999999999998876655432222111000 00 001112334677788999999999999997
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEE-cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccc----------
Q 013827 213 RNILASASADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF---------- 281 (436)
Q Consensus 213 ~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~---------- 281 (436)
.+|++|+.||.|.-|+..++..-+.. +.|...|.+++-+..+ .+++.+.|.++++.++........
T Consensus 333 -~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~ 409 (603)
T KOG0318|consen 333 -KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK 409 (603)
T ss_pred -CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCcccccceeecCCCce
Confidence 69999999999999999988765544 6799999999988755 488999999999997742211000
Q ss_pred ---------------------e--------EeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccE
Q 013827 282 ---------------------K--------WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF 332 (436)
Q Consensus 282 ---------------------~--------~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 332 (436)
+ ........+++++|++ ..+++|+.|+.|++|.+..... ....
T Consensus 410 ~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~-~~vaVGG~Dgkvhvysl~g~~l-------~ee~ 481 (603)
T KOG0318|consen 410 GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG-SEVAVGGQDGKVHVYSLSGDEL-------KEEA 481 (603)
T ss_pred eEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC-CEEEEecccceEEEEEecCCcc-------ccee
Confidence 0 0112246688999977 6899999999999999987632 3344
Q ss_pred EEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 013827 333 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 333 ~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 412 (436)
....|.++|++++|+|++ .+||++...+.+.+||+.+.+. ......-|.+.|.+++|+|+.. ++|+|+-|..|.||+
T Consensus 482 ~~~~h~a~iT~vaySpd~-~yla~~Da~rkvv~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 482 KLLEHRAAITDVAYSPDG-AYLAAGDASRKVVLYDVASREV-KTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYS 558 (603)
T ss_pred eeecccCCceEEEECCCC-cEEEEeccCCcEEEEEcccCce-ecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEE
Confidence 667899999999999999 9999999999999999999875 3333344889999999999999 699999999999999
Q ss_pred CCCCccc
Q 013827 413 TLSDAGI 419 (436)
Q Consensus 413 ~~~~~~~ 419 (436)
+......
T Consensus 559 v~kP~~~ 565 (603)
T KOG0318|consen 559 VKKPAKH 565 (603)
T ss_pred ccChhhh
Confidence 9876554
No 19
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=237.85 Aligned_cols=290 Identities=22% Similarity=0.353 Sum_probs=227.5
Q ss_pred CCCCccccccceeccC-CceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEE
Q 013827 69 DDEDSEDLEDMTINPN-DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA 147 (436)
Q Consensus 69 ~~~~~~~v~~~~~sp~-~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 147 (436)
...|.+.+..++|+|- |.+||+++.+. .|.+|+......-.....-+.....-+-.++| +|.|++||
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk-----~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw-------sp~g~~La 77 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDK-----AVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW-------SPHGRYLA 77 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCc-----eEEEEecCCCCcEEEEEeccccchheeeeeee-------cCCCcEEE
Confidence 3577889999999999 99999999887 77777776432211111111111122234666 99999999
Q ss_pred EeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEE
Q 013827 148 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 227 (436)
Q Consensus 148 ~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~v 227 (436)
+|+.|.++.||.-..++ ......+.||...|.|++|+++| ++||+|+.|.+|.|
T Consensus 78 ~aSFD~t~~Iw~k~~~e-------------------------fecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWi 131 (312)
T KOG0645|consen 78 SASFDATVVIWKKEDGE-------------------------FECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWI 131 (312)
T ss_pred EeeccceEEEeecCCCc-------------------------eeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEE
Confidence 99999999999765322 33445578999999999999997 59999999999999
Q ss_pred EeCCCC---eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC---CCccceEeeeCCeeEEEeCCCCCcE
Q 013827 228 WDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS---THSGFKWAVAADVESLAWDPHAEHS 301 (436)
Q Consensus 228 wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~ 301 (436)
|.+..+ ++...++.|...|..+.|+|.. .+|+++++|++|++|+-... .+...+.++...+.+++|++.| ..
T Consensus 132 We~deddEfec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~r 209 (312)
T KOG0645|consen 132 WEIDEDDEFECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SR 209 (312)
T ss_pred EEecCCCcEEEEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC-ce
Confidence 999744 6788899999999999999998 89999999999999987632 2345566778899999999988 68
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC--c--eeE-
Q 013827 302 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--P--SCI- 376 (436)
Q Consensus 302 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~--~--~~~- 376 (436)
+++++.|++++||..... ....|...+..+.|. + ..|++++.|+.|++|.-.... + ..+
T Consensus 210 l~s~sdD~tv~Iw~~~~~-------------~~~~~sr~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~ 273 (312)
T KOG0645|consen 210 LVSCSDDGTVSIWRLYTD-------------LSGMHSRALYDVPWD-N--GVIASGGGDDAIRLFKESDSPDEPSWNLLA 273 (312)
T ss_pred EEEecCCcceEeeeeccC-------------cchhcccceEeeeec-c--cceEeccCCCEEEEEEecCCCCCchHHHHH
Confidence 999999999999987644 112477889999999 3 599999999999999776421 1 111
Q ss_pred EeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 377 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 377 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
.....|...|++++|+|..+.+|++|+.||.|++|.+.
T Consensus 274 ~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 274 KKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred hhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 13346888999999999655579999999999999875
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.4e-36 Score=277.22 Aligned_cols=242 Identities=20% Similarity=0.309 Sum_probs=208.9
Q ss_pred ccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCC-------------------------------Cceeeeccc
Q 013827 73 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD-------------------------------PNLYVHHHI 121 (436)
Q Consensus 73 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~-------------------------------~~~~~~~~~ 121 (436)
...+.+..|++|+.+||+|-.+. .|.+|....... ...+..|..
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS-----~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDS-----SVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred CCcceeEeecCCcchhhcccccc-----EEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 45688999999999999998775 444444332100 011222222
Q ss_pred ccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCccc
Q 013827 122 IIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD 201 (436)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 201 (436)
++ +...|+|+.++|++++.|++||+|.+.+..++- .+.||..
T Consensus 453 PV-----------yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---------------------------~y~GH~~ 494 (707)
T KOG0263|consen 453 PV-----------YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---------------------------IYKGHLA 494 (707)
T ss_pred ce-----------eeeeecccccceeeccCCcceeeeecccceeEE---------------------------EecCCCc
Confidence 21 344569999999999999999999998755543 2669999
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccc
Q 013827 202 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF 281 (436)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 281 (436)
+|+++.|+|-| .++|||+.|++.++|......+.+.+.+|.+.|.|+.|+|+. .++++||.|.++++||+.++.....
T Consensus 495 PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRi 572 (707)
T KOG0263|consen 495 PVWDVQFAPRG-YYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRI 572 (707)
T ss_pred ceeeEEecCCc-eEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEEEE
Confidence 99999999996 799999999999999999999999999999999999999999 9999999999999999999999998
Q ss_pred eEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCC
Q 013827 282 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK 361 (436)
Q Consensus 282 ~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~ 361 (436)
+.+|.++|.+++|+|+| .++++|+.||.|.+||+.++ ..+..+.+|++.|.++.|+.+| ..||+|+.|+
T Consensus 573 F~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~---------~~v~~l~~Ht~ti~SlsFS~dg-~vLasgg~Dn 641 (707)
T KOG0263|consen 573 FTGHKGPVTALAFSPCG-RYLASGDEDGLIKIWDLANG---------SLVKQLKGHTGTIYSLSFSRDG-NVLASGGADN 641 (707)
T ss_pred ecCCCCceEEEEEcCCC-ceEeecccCCcEEEEEcCCC---------cchhhhhcccCceeEEEEecCC-CEEEecCCCC
Confidence 99999999999999987 79999999999999999988 6788899999999999999999 9999999999
Q ss_pred cEEEEECCC
Q 013827 362 MVKLWDLSN 370 (436)
Q Consensus 362 ~i~iwd~~~ 370 (436)
+|++||+..
T Consensus 642 sV~lWD~~~ 650 (707)
T KOG0263|consen 642 SVRLWDLTK 650 (707)
T ss_pred eEEEEEchh
Confidence 999999864
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.8e-35 Score=230.34 Aligned_cols=284 Identities=16% Similarity=0.241 Sum_probs=224.2
Q ss_pred cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCC
Q 013827 31 NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG 110 (436)
Q Consensus 31 ~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~ 110 (436)
+=|-|+|+|....+.-..+++ ..+..|..+.+.||++.||+|+.. +|.+|+....
T Consensus 17 ~YDhTIRfWqa~tG~C~rTiq-------------------h~dsqVNrLeiTpdk~~LAaa~~q------hvRlyD~~S~ 71 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRTIQ-------------------HPDSQVNRLEITPDKKDLAAAGNQ------HVRLYDLNSN 71 (311)
T ss_pred cCcceeeeeehhcCeEEEEEe-------------------cCccceeeEEEcCCcchhhhccCC------eeEEEEccCC
Confidence 678899999665444332222 335679999999999999999776 5666665544
Q ss_pred CC--CceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCC
Q 013827 111 GD--PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGK 188 (436)
Q Consensus 111 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (436)
.. ...+..|..-+ ..+ .|..+|+.+++|++||+++|||+....+.+
T Consensus 72 np~Pv~t~e~h~kNV----taV-------gF~~dgrWMyTgseDgt~kIWdlR~~~~qR--------------------- 119 (311)
T KOG0315|consen 72 NPNPVATFEGHTKNV----TAV-------GFQCDGRWMYTGSEDGTVKIWDLRSLSCQR--------------------- 119 (311)
T ss_pred CCCceeEEeccCCce----EEE-------EEeecCeEEEecCCCceEEEEeccCcccch---------------------
Confidence 22 22233332222 233 347899999999999999999998744433
Q ss_pred cccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEE-cccCCCeEEEEEcCCCCCEEEEEECCCc
Q 013827 189 KSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRS 267 (436)
Q Consensus 189 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 267 (436)
...|..+|+++..+|+ ...|++|..+|.|++||+.+..+...+ .....+|+++...|+| .+++.+...|.
T Consensus 120 -------~~~~~spVn~vvlhpn-QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg-sml~a~nnkG~ 190 (311)
T KOG0315|consen 120 -------NYQHNSPVNTVVLHPN-QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG-SMLAAANNKGN 190 (311)
T ss_pred -------hccCCCCcceEEecCC-cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCC-cEEEEecCCcc
Confidence 2258899999999998 468999999999999999988776665 4455789999999999 89999999999
Q ss_pred EEEEecCCCCC------ccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCe
Q 013827 268 VVMKDARISTH------SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 341 (436)
Q Consensus 268 i~~wd~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 341 (436)
.++|++-.... +..+..|.+.+..+.++|++ +++++++.|.+++||+.... .+....+.+|+..+
T Consensus 191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~--------~kle~~l~gh~rWv 261 (311)
T KOG0315|consen 191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDF--------FKLELVLTGHQRWV 261 (311)
T ss_pred EEEEEccCCCccccceEhhheecccceEEEEEECCCC-cEEEeecCCceEEEEecCCc--------eeeEEEeecCCceE
Confidence 99999865432 23345688899999999987 69999999999999999876 24567788999999
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEc
Q 013827 342 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 392 (436)
Q Consensus 342 ~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 392 (436)
...+|+.++ .+|++|+.|+.+++|+++.++ .+....+|..+..|++..
T Consensus 262 Wdc~FS~dg-~YlvTassd~~~rlW~~~~~k--~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 262 WDCAFSADG-EYLVTASSDHTARLWDLSAGK--EVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EeeeeccCc-cEEEecCCCCceeecccccCc--eeeecCCcccccEEEEee
Confidence 999999999 999999999999999999998 566677887777777654
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3e-34 Score=260.11 Aligned_cols=348 Identities=21% Similarity=0.318 Sum_probs=259.4
Q ss_pred HHHHhhcccceeeec-----cCCCCcceeeecceeeccccccceeccC---------CCC--CCcccCCC-----CCCcc
Q 013827 16 ILRLYHSCFRCHKIS-----NASNTSSIWLISGVEIFGKGLGDLYYAS---------NQM--DPYLKDKD-----DEDSE 74 (436)
Q Consensus 16 ~~~~~~~~~~~~~~~-----~~~~t~~~w~~~~~~~~~~~~~~~~~~~---------~~~--~~~~~~~~-----~~~~~ 74 (436)
+..++.-|++..+.. +.||-+-+|..+............ ++. .|+ .++.-... .....
T Consensus 188 Hkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd-~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~ 266 (893)
T KOG0291|consen 188 HKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKD-EEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSS 266 (893)
T ss_pred CCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccc-ccccccccccccchhhhcceEEEEEEeeeeccccc
Confidence 334455566554444 899999999887544333222100 000 000 00000000 12236
Q ss_pred ccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCc-ceeecccCCCCCCCCCcEEEEeeCC-
Q 013827 75 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFP-LCMAWLDCPLKDREKGNFMAVGSME- 152 (436)
Q Consensus 75 ~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~g~~d- 152 (436)
.|++.+|+|.-++||+|-..+ ...+|+...- . .-|...+...+ ..+.| +..|.+||.|+..
T Consensus 267 kvtaa~fH~~t~~lvvgFssG-----~f~LyelP~f---~--lih~LSis~~~I~t~~~-------N~tGDWiA~g~~kl 329 (893)
T KOG0291|consen 267 KVTAAAFHKGTNLLVVGFSSG-----EFGLYELPDF---N--LIHSLSISDQKILTVSF-------NSTGDWIAFGCSKL 329 (893)
T ss_pred ceeeeeccCCceEEEEEecCC-----eeEEEecCCc---e--EEEEeecccceeeEEEe-------cccCCEEEEcCCcc
Confidence 789999999999999998876 5556655543 2 22333333222 23444 7789999999865
Q ss_pred CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 153 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 232 (436)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~ 232 (436)
|.+.||++.+.. .+...++|...+++++++||| +++|+|+.||.|+|||...
T Consensus 330 gQLlVweWqsEs---------------------------YVlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~S 381 (893)
T KOG0291|consen 330 GQLLVWEWQSES---------------------------YVLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQS 381 (893)
T ss_pred ceEEEEEeeccc---------------------------eeeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccC
Confidence 899999997533 333467899999999999997 6999999999999999999
Q ss_pred CeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE-eeeCCeeEEEeCCCCCcEEEEEeCCC-c
Q 013827 233 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDG-T 310 (436)
Q Consensus 233 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~dg-~ 310 (436)
+-|..+|..|++.|+.+.|+..+ +.+++++.||+|+.||+...+....+. +.+....+++.+|.|. ++.+|+.|. .
T Consensus 382 gfC~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F~ 459 (893)
T KOG0291|consen 382 GFCFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSFE 459 (893)
T ss_pred ceEEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC-EEEeeccceEE
Confidence 99999999999999999999999 999999999999999998766544332 2345578899999884 666666654 6
Q ss_pred EEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEE
Q 013827 311 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA 390 (436)
Q Consensus 311 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 390 (436)
|.+|++.++ +.+..+.+|.++|.++.|+|.+ ..|++++.|.+|++||+-.... .+.++. +...+..++
T Consensus 460 IfvWS~qTG---------qllDiLsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~-~vEtl~-i~sdvl~vs 527 (893)
T KOG0291|consen 460 IFVWSVQTG---------QLLDILSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSG-TVETLE-IRSDVLAVS 527 (893)
T ss_pred EEEEEeecC---------eeeehhcCCCCcceeeEEcccc-CeEEeccccceEEEEEeeccCc-eeeeEe-eccceeEEE
Confidence 999999998 7788999999999999999999 8999999999999999976531 233333 455799999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeCCCCcccccccc
Q 013827 391 FSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 424 (436)
Q Consensus 391 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (436)
|+|+|+. |+++..||.|.+||...+..+...-+
T Consensus 528 frPdG~e-laVaTldgqItf~d~~~~~q~~~Idg 560 (893)
T KOG0291|consen 528 FRPDGKE-LAVATLDGQITFFDIKEAVQVGSIDG 560 (893)
T ss_pred EcCCCCe-EEEEEecceEEEEEhhhceeeccccc
Confidence 9999995 99999999999999998877644433
No 23
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=9.7e-34 Score=284.60 Aligned_cols=293 Identities=19% Similarity=0.231 Sum_probs=227.4
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCC----C---CceeeecccccCcCcceeecccCCCCCCCCC
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG----D---PNLYVHHHIIIPAFPLCMAWLDCPLKDREKG 143 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 143 (436)
.|...|.+++|+|+++++|+|+.++ .|.+|+..... . +.....+ .....++.|. ++++
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~-----~I~iwd~~~~~~~~~~~~~~~~~~~~----~~~v~~l~~~------~~~~ 545 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNK-----KIKIFECESIIKDGRDIHYPVVELAS----RSKLSGICWN------SYIK 545 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCC-----EEEEEECCcccccccccccceEEecc----cCceeeEEec------cCCC
Confidence 4788999999999999999999887 66666643210 0 0011111 1223456663 2358
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCC
Q 013827 144 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK 223 (436)
Q Consensus 144 ~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 223 (436)
.+||+++.||+|+|||+.+++.+. .+.+|...|++++|+|.+..+|++|+.|+
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~---------------------------~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg 598 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVT---------------------------EMKEHEKRVWSIDYSSADPTLLASGSDDG 598 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEE---------------------------EecCCCCCEEEEEEcCCCCCEEEEEcCCC
Confidence 899999999999999997644332 25589999999999974346999999999
Q ss_pred cEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCC-ccceEeeeCCeeEEEeCCCCCcEE
Q 013827 224 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLAWDPHAEHSF 302 (436)
Q Consensus 224 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~ 302 (436)
+|++||+.++..+..+..+ ..+.++.|++..+.+|++|+.||.|++||++.... ......|...|.++.|.+ + ..+
T Consensus 599 ~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~-~-~~l 675 (793)
T PLN00181 599 SVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD-S-STL 675 (793)
T ss_pred EEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC-C-CEE
Confidence 9999999999888888744 68999999654338999999999999999987653 344567888999999974 4 589
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEe----
Q 013827 303 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS---- 378 (436)
Q Consensus 303 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---- 378 (436)
++++.|+.|++||++...... ...++..+.+|...+..+.|+|++ .+|++|+.|+.|++|+.....+.....
T Consensus 676 vs~s~D~~ikiWd~~~~~~~~---~~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~ 751 (793)
T PLN00181 676 VSSSTDNTLKLWDLSMSISGI---NETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMPVLSYKFKTI 751 (793)
T ss_pred EEEECCCEEEEEeCCCCcccc---CCcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCceEEEecccC
Confidence 999999999999998542110 124577888999999999999998 899999999999999987654322221
Q ss_pred -------eCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 013827 379 -------RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 379 -------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 413 (436)
...+...|.+++|+|++. .|++|+.||.|+||++
T Consensus 752 ~~~~~~~~~~~~~~V~~v~ws~~~~-~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 752 DPVSGLEVDDASQFISSVCWRGQSS-TLVAANSTGNIKILEM 792 (793)
T ss_pred CcccccccCCCCcEEEEEEEcCCCC-eEEEecCCCcEEEEec
Confidence 123456799999999999 5889999999999997
No 24
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.1e-33 Score=251.80 Aligned_cols=283 Identities=29% Similarity=0.484 Sum_probs=233.1
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEee
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 150 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 150 (436)
+|.+.|.+++|+|++++|++++.++ .+.+|+............|... ..++.| +|++++|++++
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g-----~i~i~~~~~~~~~~~~~~~~~~----i~~~~~-------~~~~~~l~~~~ 70 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDG-----TIKVWDLETGELLRTLKGHTGP----VRDVAA-------SADGTYLASGS 70 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCc-----EEEEEEeeCCCcEEEEecCCcc----eeEEEE-------CCCCCEEEEEc
Confidence 6788999999999999999998776 6777766554322222222211 135555 78889999999
Q ss_pred CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 013827 151 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 230 (436)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~ 230 (436)
.+|.|++|++...+... .+..|...|.++.|+|++ .++++++.|+.+++||+
T Consensus 71 ~~~~i~i~~~~~~~~~~---------------------------~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 71 SDKTIRLWDLETGECVR---------------------------TLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDV 122 (289)
T ss_pred CCCeEEEEEcCcccceE---------------------------EEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEEC
Confidence 99999999998643322 244688899999999985 58888888999999999
Q ss_pred CCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCc
Q 013827 231 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT 310 (436)
Q Consensus 231 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~ 310 (436)
.+++....+..|...+.++.|+|++ .++++++.++.|++||++..+.......+...+.++.|+|++ ..+++++.++.
T Consensus 123 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~ 200 (289)
T cd00200 123 ETGKCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGT 200 (289)
T ss_pred CCcEEEEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCc-CEEEEecCCCc
Confidence 9888888888899999999999997 788888889999999999877777666777899999999987 57778888999
Q ss_pred EEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEE
Q 013827 311 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA 390 (436)
Q Consensus 311 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 390 (436)
+++||++.. .....+..|...+.++.|+|++ .++++++.|+.|++||+.+.+ ....+..|...+.+++
T Consensus 201 i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~i~~~~ 268 (289)
T cd00200 201 IKLWDLSTG---------KCLGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGE--CVQTLSGHTNSVTSLA 268 (289)
T ss_pred EEEEECCCC---------ceecchhhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCce--eEEEccccCCcEEEEE
Confidence 999999876 4456666788899999999996 888888889999999999876 3445567888999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEe
Q 013827 391 FSEDSPFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 391 ~~~~~~~~l~s~~~dg~i~iwd 412 (436)
|+|++. .|++++.||.+++|+
T Consensus 269 ~~~~~~-~l~~~~~d~~i~iw~ 289 (289)
T cd00200 269 WSPDGK-RLASGSADGTIRIWD 289 (289)
T ss_pred ECCCCC-EEEEecCCCeEEecC
Confidence 999988 588999999999996
No 25
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.5e-36 Score=255.24 Aligned_cols=248 Identities=20% Similarity=0.332 Sum_probs=217.7
Q ss_pred cCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCccccee
Q 013827 125 AFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL 204 (436)
Q Consensus 125 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 204 (436)
..+..+.| .|+|+.|++|+..|.+.+|+..+ ......+..|..+|.
T Consensus 97 c~V~~v~W-------tPeGRRLltgs~SGEFtLWNg~~---------------------------fnFEtilQaHDs~Vr 142 (464)
T KOG0284|consen 97 CPVNVVRW-------TPEGRRLLTGSQSGEFTLWNGTS---------------------------FNFETILQAHDSPVR 142 (464)
T ss_pred cceeeEEE-------cCCCceeEeecccccEEEecCce---------------------------eeHHHHhhhhcccce
Confidence 33445666 89999999999999999999743 334445678999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEccc-CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE
Q 013827 205 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW 283 (436)
Q Consensus 205 ~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 283 (436)
++.|+++| .+++||+.+|.|++|+..-.. ++.++.| ...|++++|+|+. ..|++++.||+|+|||....+....+.
T Consensus 143 ~m~ws~~g-~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~ 219 (464)
T KOG0284|consen 143 TMKWSHNG-TWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLR 219 (464)
T ss_pred eEEEccCC-CEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheec
Confidence 99999997 699999999999999976443 5555554 4899999999988 889999999999999999988888889
Q ss_pred eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcE
Q 013827 284 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 363 (436)
Q Consensus 284 ~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i 363 (436)
+|.-.|.+++|+|.. .++++++.|..|++||.+++ .++.++..|...|..+.|+|++ ++|++++.|..+
T Consensus 220 GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg---------~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~ 288 (464)
T KOG0284|consen 220 GHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSG---------SCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSC 288 (464)
T ss_pred cCCCCcceeccCCcc-ceeEEccCCceeEeecCCCc---------chhhhhhhccceEEEEEEcCCC-CeeEEccCCceE
Confidence 999999999999975 69999999999999999998 7799999999999999999999 999999999999
Q ss_pred EEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 364 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 364 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
+++|+++.+ .++.+.+|...|+++.|+|-...+|++|+.||.|..|.+...+.+...
T Consensus 289 kv~DiR~mk--El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i 345 (464)
T KOG0284|consen 289 KVFDIRTMK--ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI 345 (464)
T ss_pred EEEehhHhH--HHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCC
Confidence 999999665 567788999999999999988779999999999999999855555443
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.4e-34 Score=269.20 Aligned_cols=285 Identities=21% Similarity=0.341 Sum_probs=230.2
Q ss_pred CccccccceeccCCceEEEEEecCCcceeEEEEEecCCCC--CCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 72 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG--DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 72 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
+...|.++.|+|+|+.++++..++ .+.+|...... .......|...+ .+++| +|+++++++|
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~-----~i~~~~~~~~~~~~~~~l~~h~~~v----~~~~f-------s~d~~~l~s~ 221 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDG-----LIRIWKLEGIKSNLLRELSGHTRGV----SDVAF-------SPDGSYLLSG 221 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCC-----cEEEeecccccchhhccccccccce----eeeEE-------CCCCcEEEEe
Confidence 467889999999999999998886 44455443322 111123333222 34555 9999999999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+.|++|+|||+... ......+.+|...|++++|+|+| +++++|+.|++|+|||
T Consensus 222 s~D~tiriwd~~~~--------------------------~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 222 SDDKTLRIWDLKDD--------------------------GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWD 274 (456)
T ss_pred cCCceEEEeeccCC--------------------------CeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEe
Confidence 99999999999421 23334467999999999999998 7999999999999999
Q ss_pred CCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCC--ccceEeeeC--CeeEEEeCCCCCcEEEEE
Q 013827 230 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH--SGFKWAVAA--DVESLAWDPHAEHSFVVS 305 (436)
Q Consensus 230 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~--~i~~~~~~~~~~~~~~~~ 305 (436)
+++++++..+.+|...|++++|++++ ++|++++.|+.|++||+.++.. ......+.. +++.+.|+|++ .+++++
T Consensus 275 ~~~~~~~~~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~ 352 (456)
T KOG0266|consen 275 VRTGECVRKLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG-KYLLSA 352 (456)
T ss_pred ccCCeEEEeeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC-cEEEEe
Confidence 99999999999999999999999999 8999999999999999999883 333333333 59999999987 689999
Q ss_pred eCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCC---eEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCC
Q 013827 306 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA---VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK 382 (436)
Q Consensus 306 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 382 (436)
+.|+.+++||++.. .....+.+|... +.+...++.+ .++++|+.|+.|++||+.+.. .+..+.+|
T Consensus 353 ~~d~~~~~w~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s~~--~~~~l~~h 420 (456)
T KOG0266|consen 353 SLDRTLKLWDLRSG---------KSVGTYTGHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSSGG--ILQRLEGH 420 (456)
T ss_pred cCCCeEEEEEccCC---------cceeeecccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCccc--hhhhhcCC
Confidence 99999999999987 556777777764 3344456666 899999999999999999876 45667788
Q ss_pred -CCcEEEEEEcCCCCcEEEEEe--CCCcEEEEeCC
Q 013827 383 -AGAVFSVAFSEDSPFVLAIGG--SKGKLEIWDTL 414 (436)
Q Consensus 383 -~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~ 414 (436)
...+..+.++|... ++++++ .|+.+++|...
T Consensus 421 ~~~~~~~~~~~~~~~-~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 421 SKAAVSDLSSHPTEN-LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCceeccccCCCcC-eeeecCcCCCceEEEecCC
Confidence 88999999999998 588887 68999999754
No 27
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.3e-34 Score=241.66 Aligned_cols=325 Identities=12% Similarity=0.172 Sum_probs=259.1
Q ss_pred hhHHHHHHHhhcccceeeec-----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCC
Q 013827 11 SRLEEILRLYHSCFRCHKIS-----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPND 85 (436)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~-----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 85 (436)
..+++|...+|+|.-.|..+ +.|+.+-+|++...+... ...+|.+.|.++.||.||
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~-------------------eltgHKDSVt~~~Fshdg 118 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG-------------------ELTGHKDSVTCCSFSHDG 118 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee-------------------EecCCCCceEEEEEccCc
Confidence 45677888899999888666 899999999887766421 234899999999999999
Q ss_pred ceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCC
Q 013827 86 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDE 165 (436)
Q Consensus 86 ~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~ 165 (436)
.+||+|..++ .|.+|+..++....... ...--+.|+ .|+|.+..|++|+.||.+-+|.+.+..
T Consensus 119 tlLATGdmsG-----~v~v~~~stg~~~~~~~-------~e~~dieWl----~WHp~a~illAG~~DGsvWmw~ip~~~- 181 (399)
T KOG0296|consen 119 TLLATGDMSG-----KVLVFKVSTGGEQWKLD-------QEVEDIEWL----KWHPRAHILLAGSTDGSVWMWQIPSQA- 181 (399)
T ss_pred eEEEecCCCc-----cEEEEEcccCceEEEee-------cccCceEEE----EecccccEEEeecCCCcEEEEECCCcc-
Confidence 9999999987 77778776652221111 111235563 449999999999999999999998632
Q ss_pred CcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcc-cCC
Q 013827 166 VQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-HTD 244 (436)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-~~~ 244 (436)
....+.||..++++=.|.|+| +.++++..||+|++||+.+++++..+.+ ...
T Consensus 182 --------------------------~~kv~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~ 234 (399)
T KOG0296|consen 182 --------------------------LCKVMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPLHKITQAEGL 234 (399)
T ss_pred --------------------------eeeEecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCceeEEecccccC
Confidence 223366899999999999997 5999999999999999999999888853 344
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE--------eeeCCeeEEEeCCCC--CcEEEEEeCCCcEEEE
Q 013827 245 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--------AVAADVESLAWDPHA--EHSFVVSLEDGTIKGF 314 (436)
Q Consensus 245 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--------~~~~~i~~~~~~~~~--~~~~~~~~~dg~i~i~ 314 (436)
...++.++..+ ..++.|+.++.+++.+..+++.+.... .+...+.++.+.|.. -.++++|+-||+|.||
T Consensus 235 ~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iy 313 (399)
T KOG0296|consen 235 ELPCISLNLAG-STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIY 313 (399)
T ss_pred cCCcccccccc-ceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEE
Confidence 67788888888 889999999999888877665443222 334445555544422 1478999999999999
Q ss_pred eCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCC
Q 013827 315 DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED 394 (436)
Q Consensus 315 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 394 (436)
|+... . .+..-.|..+|+.+.|-+ . .+|++++.+|.|+.||.++++ .+....+|...|.+++++|+
T Consensus 314 D~a~~---------~-~R~~c~he~~V~~l~w~~-t-~~l~t~c~~g~v~~wDaRtG~--l~~~y~GH~~~Il~f~ls~~ 379 (399)
T KOG0296|consen 314 DLAAS---------T-LRHICEHEDGVTKLKWLN-T-DYLLTACANGKVRQWDARTGQ--LKFTYTGHQMGILDFALSPQ 379 (399)
T ss_pred ecccc---------h-hheeccCCCceEEEEEcC-c-chheeeccCceEEeeeccccc--eEEEEecCchheeEEEEcCC
Confidence 99875 2 455566889999999999 4 799999999999999999998 67788899999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCC
Q 013827 395 SPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 395 ~~~~l~s~~~dg~i~iwd~~ 414 (436)
++ +++|++.|++.+||++.
T Consensus 380 ~~-~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 380 KR-LVVTVSDDNTALVFEVP 398 (399)
T ss_pred Cc-EEEEecCCCeEEEEecC
Confidence 99 69999999999999875
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.6e-35 Score=233.79 Aligned_cols=291 Identities=23% Similarity=0.349 Sum_probs=227.1
Q ss_pred hHHHHHHHhhcccceeee-c-----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCC
Q 013827 12 RLEEILRLYHSCFRCHKI-S-----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPND 85 (436)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~-~-----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 85 (436)
.|+.+..++-...|+|.. . +.|+++|||+.....-+ .+.+...+.|...|.+++|+|.|
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~---------------~ck~vld~~hkrsVRsvAwsp~g 73 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSW---------------TCKTVLDDGHKRSVRSVAWSPHG 73 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcE---------------EEEEeccccchheeeeeeecCCC
Confidence 445555567778899883 2 99999999977641111 12223445899999999999999
Q ss_pred ceEEEEEecCCcceeEEEEEecCCCC--CCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCC
Q 013827 86 AVIVCARNEDDVSHLEVYILEESDGG--DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVI 163 (436)
Q Consensus 86 ~~l~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~ 163 (436)
++||+|+.+. .+.+|....++ ....+-.|+..+ -|++| +++|++||+++.|+.|-||.++..
T Consensus 74 ~~La~aSFD~-----t~~Iw~k~~~efecv~~lEGHEnEV----K~Vaw-------s~sG~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 74 RYLASASFDA-----TVVIWKKEDGEFECVATLEGHENEV----KCVAW-------SASGNYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred cEEEEeeccc-----eEEEeecCCCceeEEeeeeccccce----eEEEE-------cCCCCEEEEeeCCCeEEEEEecCC
Confidence 9999999997 77788766442 233444555444 47888 899999999999999999999865
Q ss_pred CCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCC---CCeEEEEEc
Q 013827 164 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA---AGKCNLTLE 240 (436)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~---~~~~~~~~~ 240 (436)
+...... .+++|...|..+.|+|.. .+|++++.|.+|++|+-. .-.+++++.
T Consensus 138 dEfec~a------------------------VL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~ 192 (312)
T KOG0645|consen 138 DEFECIA------------------------VLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLD 192 (312)
T ss_pred CcEEEEe------------------------eeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEec
Confidence 5544433 366899999999999984 599999999999999876 236889999
Q ss_pred ccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCC
Q 013827 241 HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 320 (436)
Q Consensus 241 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 320 (436)
+|...|.+++|++.| ..|++++.|++++||...+.- ...|...+..+.|. ++ .+++++.|+.|++|.-....
T Consensus 193 g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~ 264 (312)
T KOG0645|consen 193 GHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDSP 264 (312)
T ss_pred CccceEEEEEecCCC-ceEEEecCCcceEeeeeccCc----chhcccceEeeeec-cc--ceEeccCCCEEEEEEecCCC
Confidence 999999999999999 899999999999999876321 33467889999998 43 79999999999999876431
Q ss_pred CCCCCCCCc-ccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 013827 321 SDPDSTSQQ-SSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 369 (436)
Q Consensus 321 ~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~ 369 (436)
..+ ... ....-..|...|++++|+|...+.|++|+.||.|++|.+.
T Consensus 265 d~p---~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 265 DEP---SWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCc---hHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 111 111 1223457888999999999766899999999999999864
No 29
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.1e-35 Score=263.66 Aligned_cols=294 Identities=21% Similarity=0.325 Sum_probs=246.3
Q ss_pred CCccccccceec-cCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 71 EDSEDLEDMTIN-PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 71 ~~~~~v~~~~~s-p~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
+-.++|.+|.|- |+...||++++.. .+.+|+..+.... ++..|...+ +++.- ..+|.+|++|
T Consensus 321 G~ndEI~Dm~~lG~e~~~laVATNs~-----~lr~y~~~~~~c~-ii~GH~e~v----lSL~~-------~~~g~llat~ 383 (775)
T KOG0319|consen 321 GYNDEILDMKFLGPEESHLAVATNSP-----ELRLYTLPTSYCQ-IIPGHTEAV----LSLDV-------WSSGDLLATG 383 (775)
T ss_pred CCchhheeeeecCCccceEEEEeCCC-----ceEEEecCCCceE-EEeCchhhe----eeeee-------cccCcEEEEe
Confidence 556789999987 8889999999887 6666666555433 555565444 33331 2467899999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+.|.++++|.++..... ........+|...|.+++++..+..+|+++|.|+++++|+
T Consensus 384 sKD~svilWr~~~~~~~-----------------------~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~ 440 (775)
T KOG0319|consen 384 SKDKSVILWRLNNNCSK-----------------------SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWD 440 (775)
T ss_pred cCCceEEEEEecCCcch-----------------------hhhhhhhcccccccceeeecccCccEEEEecCCceEEEec
Confidence 99999999998433221 2233335689999999999998888999999999999999
Q ss_pred CCCCeE-----EE----EEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCc
Q 013827 230 VAAGKC-----NL----TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 300 (436)
Q Consensus 230 ~~~~~~-----~~----~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 300 (436)
+...+. .. ....|...|++++.+|+. .++++||.|.+.++|++........+.+|...+.++.|+|.+ +
T Consensus 441 l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~d-q 518 (775)
T KOG0319|consen 441 LPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKND-Q 518 (775)
T ss_pred CCCcccccccceehhhHHHHhhcccccceEecCCC-ceEEecccccceeeecccCceEEEEeeCCccceEEEEecccc-c
Confidence 976321 11 224699999999999999 999999999999999999888888888999999999999976 7
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeC
Q 013827 301 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 380 (436)
Q Consensus 301 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 380 (436)
++++++.|++|+||.+.+. .++.++.+|+..|..+.|-.++ ..|++++.||-|++|++.+.+ ++..+.
T Consensus 519 ~laT~SgD~TvKIW~is~f---------SClkT~eGH~~aVlra~F~~~~-~qliS~~adGliKlWnikt~e--C~~tlD 586 (775)
T KOG0319|consen 519 LLATCSGDKTVKIWSISTF---------SCLKTFEGHTSAVLRASFIRNG-KQLISAGADGLIKLWNIKTNE--CEMTLD 586 (775)
T ss_pred eeEeccCCceEEEEEeccc---------eeeeeecCccceeEeeeeeeCC-cEEEeccCCCcEEEEeccchh--hhhhhh
Confidence 9999999999999999988 7899999999999999999998 899999999999999999998 888999
Q ss_pred CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccc
Q 013827 381 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 419 (436)
Q Consensus 381 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (436)
.|...|++++-+|... +++||+.||.|.+|.=.+.+..
T Consensus 587 ~H~DrvWaL~~~~~~~-~~~tgg~Dg~i~~wkD~Te~~~ 624 (775)
T KOG0319|consen 587 AHNDRVWALSVSPLLD-MFVTGGGDGRIIFWKDVTEEEQ 624 (775)
T ss_pred hccceeEEEeecCccc-eeEecCCCeEEEEeecCcHHHH
Confidence 9999999999999999 6999999999999975554443
No 30
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-34 Score=256.06 Aligned_cols=281 Identities=20% Similarity=0.314 Sum_probs=232.8
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEee
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 150 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 150 (436)
.+++.|.++.|||..+.++++-..+ +|.+|+.++.....-+.-.+.++. +..|-+.-+++++|+
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG-----~V~IWnyetqtmVksfeV~~~PvR-----------a~kfiaRknWiv~Gs 74 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNG-----DVQIWNYETQTMVKSFEVSEVPVR-----------AAKFIARKNWIVTGS 74 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecC-----eeEEEecccceeeeeeeecccchh-----------hheeeeccceEEEec
Confidence 4788999999999999999998887 555555554411121211222221 122345678899999
Q ss_pred CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 013827 151 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 230 (436)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~ 230 (436)
.|..|+||+.++++.+.. +..|.+-|.+++.+|.. .+++|++.|-+|++||.
T Consensus 75 DD~~IrVfnynt~ekV~~---------------------------FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~w 126 (794)
T KOG0276|consen 75 DDMQIRVFNYNTGEKVKT---------------------------FEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDW 126 (794)
T ss_pred CCceEEEEecccceeeEE---------------------------eeccccceeeeeecCCC-CeEEecCCccEEEEeec
Confidence 999999999998766654 67899999999999995 59999999999999999
Q ss_pred CCC-eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCC-CcEEEEEeCC
Q 013827 231 AAG-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA-EHSFVVSLED 308 (436)
Q Consensus 231 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~d 308 (436)
+.+ .+.+++.+|...|.+++|+|..++.+++++.|++|++|.+....+...+.+|...|+++.+-+.| .-++++|++|
T Consensus 127 e~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD 206 (794)
T KOG0276|consen 127 ENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD 206 (794)
T ss_pred cCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC
Confidence 865 67899999999999999999988999999999999999999999888888999999999998754 3489999999
Q ss_pred CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEE
Q 013827 309 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS 388 (436)
Q Consensus 309 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 388 (436)
.++++||..+. .+++++.+|...|..+.|+|.- -++++|++||+++||+..+-+. ...+....+.+++
T Consensus 207 ~tiKvWDyQtk---------~CV~TLeGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs~Ty~l--E~tLn~gleRvW~ 274 (794)
T KOG0276|consen 207 LTIKVWDYQTK---------SCVQTLEGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNSKTYKL--EKTLNYGLERVWC 274 (794)
T ss_pred ceEEEeecchH---------HHHHHhhcccccceEEEecCCC-cEEEEecCCccEEEecCcceeh--hhhhhcCCceEEE
Confidence 99999999998 8899999999999999999988 6999999999999999988763 3344445568999
Q ss_pred EEEcCCCCcEEEEEeCCCcE
Q 013827 389 VAFSEDSPFVLAIGGSKGKL 408 (436)
Q Consensus 389 ~~~~~~~~~~l~s~~~dg~i 408 (436)
++-.+.+. .++.|...|.|
T Consensus 275 I~~~k~~~-~i~vG~Deg~i 293 (794)
T KOG0276|consen 275 IAAHKGDG-KIAVGFDEGSV 293 (794)
T ss_pred EeecCCCC-eEEEeccCCcE
Confidence 99888877 47767666654
No 31
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.1e-34 Score=233.50 Aligned_cols=249 Identities=21% Similarity=0.335 Sum_probs=213.1
Q ss_pred CCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 139 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 139 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
|+|+|.+||+|+.|..|.+|++.....- ...+.+|.++|..+.|.+++ ..+++
T Consensus 55 F~P~gs~~aSgG~Dr~I~LWnv~gdceN--------------------------~~~lkgHsgAVM~l~~~~d~-s~i~S 107 (338)
T KOG0265|consen 55 FHPDGSCFASGGSDRAIVLWNVYGDCEN--------------------------FWVLKGHSGAVMELHGMRDG-SHILS 107 (338)
T ss_pred ECCCCCeEeecCCcceEEEEeccccccc--------------------------eeeeccccceeEeeeeccCC-CEEEE
Confidence 4999999999999999999997632221 11245899999999999996 59999
Q ss_pred EeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCC
Q 013827 219 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA 298 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~ 298 (436)
++.|.+|+.||+++|++++.+++|...|+++.-+..|..++.+++.|+++++||+|....+. ....+..++++.|..++
T Consensus 108 ~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~-t~~~kyqltAv~f~d~s 186 (338)
T KOG0265|consen 108 CGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK-TFENKYQLTAVGFKDTS 186 (338)
T ss_pred ecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh-ccccceeEEEEEecccc
Confidence 99999999999999999999999999999999887887889999999999999999887766 45557789999999877
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc--eeE
Q 013827 299 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP--SCI 376 (436)
Q Consensus 299 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~--~~~ 376 (436)
..+.+|+-|+.|++||++.. .....+.+|..+|+.+..+|+| .++.+-+.|.++++||++...+ .++
T Consensus 187 -~qv~sggIdn~ikvWd~r~~---------d~~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v 255 (338)
T KOG0265|consen 187 -DQVISGGIDNDIKVWDLRKN---------DGLYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCV 255 (338)
T ss_pred -cceeeccccCceeeeccccC---------cceEEeecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceE
Confidence 47999999999999999987 6789999999999999999999 8999999999999999986432 234
Q ss_pred EeeCCCC----CcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccCCC
Q 013827 377 ASRNPKA----GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 427 (436)
Q Consensus 377 ~~~~~~~----~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (436)
..+.+|. .....++|+|++.+ +.+|+.|..+++||......+..+.++.-
T Consensus 256 ~if~g~~hnfeknlL~cswsp~~~~-i~ags~dr~vyvwd~~~r~~lyklpGh~g 309 (338)
T KOG0265|consen 256 KIFQGHIHNFEKNLLKCSWSPNGTK-ITAGSADRFVYVWDTTSRRILYKLPGHYG 309 (338)
T ss_pred EEeecchhhhhhhcceeeccCCCCc-cccccccceEEEeecccccEEEEcCCcce
Confidence 4455442 23567899999996 88899999999999999888877766654
No 32
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-34 Score=244.49 Aligned_cols=289 Identities=16% Similarity=0.261 Sum_probs=231.0
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCc---eeeecccccCcCcceeecccCCCCCCCCCcEE
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPN---LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM 146 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 146 (436)
.+|.++|.-+.|||+|++||+++.+. ...+|....+.... ....|.. .+..+.| |||.++|
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~-----Taiiw~v~~d~~~kl~~tlvgh~~----~V~yi~w-------SPDdryL 284 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDS-----TAIIWIVVYDVHFKLKKTLVGHSQ----PVSYIMW-------SPDDRYL 284 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCc-----eEEEEEEecCcceeeeeeeecccC----ceEEEEE-------CCCCCeE
Confidence 58999999999999999999999886 44444444332211 2222322 2234666 9999999
Q ss_pred EEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEE
Q 013827 147 AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVK 226 (436)
Q Consensus 147 ~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 226 (436)
++++.|..+.+||+.+++..... -.+|...+.+++|.||| ..+++|+.|+++.
T Consensus 285 laCg~~e~~~lwDv~tgd~~~~y--------------------------~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 285 LACGFDEVLSLWDVDTGDLRHLY--------------------------PSGLGFSVSSCAWCPDG-FRFVTGSPDRTII 337 (519)
T ss_pred EecCchHheeeccCCcchhhhhc--------------------------ccCcCCCcceeEEccCC-ceeEecCCCCcEE
Confidence 99999999999999998876532 12466899999999997 5899999999999
Q ss_pred EEeCCCCeEEEEEccc-CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEE
Q 013827 227 IWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS 305 (436)
Q Consensus 227 vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 305 (436)
.||++... ....++- ...|.+++..+|| ..+++.+.|..|++++..+..... ......++++++.+.++ +++++.
T Consensus 338 ~wdlDgn~-~~~W~gvr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~-k~~Lvn 413 (519)
T KOG0293|consen 338 MWDLDGNI-LGNWEGVRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDG-KLALVN 413 (519)
T ss_pred EecCCcch-hhcccccccceeEEEEEcCCC-cEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCC-cEEEEE
Confidence 99987543 3444332 3568999999999 888888899999999988765554 45667889999999987 688889
Q ss_pred eCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCC--eEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCC
Q 013827 306 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA 383 (436)
Q Consensus 306 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 383 (436)
-.+..+++||+... ..+..+.+|... +..-+|--....++++|++|+.|+||+..+++ .+..+.+|.
T Consensus 414 L~~qei~LWDl~e~---------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk--ll~~LsGHs 482 (519)
T KOG0293|consen 414 LQDQEIHLWDLEEN---------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK--LLAVLSGHS 482 (519)
T ss_pred cccCeeEEeecchh---------hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc--eeEeecCCc
Confidence 99999999999965 667777788754 44445554444799999999999999999998 577889999
Q ss_pred CcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 384 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 384 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
..|++++|+|..++++|+++.||+|+||.....
T Consensus 483 ~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 483 KTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 999999999999999999999999999987643
No 33
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-34 Score=261.50 Aligned_cols=321 Identities=22% Similarity=0.304 Sum_probs=252.3
Q ss_pred cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCC
Q 013827 31 NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG 110 (436)
Q Consensus 31 ~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~ 110 (436)
+.++++++|+.+...... ..+..+ .+++..+..-+....+++...+. ++.+|+..+.
T Consensus 257 G~~g~~~~~d~es~~~~~--------~~~~~~----------~~e~~~~~~~~~~~~~l~vtaeQ-----nl~l~d~~~l 313 (775)
T KOG0319|consen 257 GGSGVVQYWDSESGKCVY--------KQRQSD----------SEEIDHLLAIESMSQLLLVTAEQ-----NLFLYDEDEL 313 (775)
T ss_pred cCCceEEEEecccchhhh--------hhccCC----------chhhhcceeccccCceEEEEccc-----eEEEEEcccc
Confidence 778888888777655431 111111 22255555555444444554554 7888866654
Q ss_pred CCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcc
Q 013827 111 GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKS 190 (436)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (436)
.......+....+ +.+.++ .|+.++||+++..+.+++|+..+..+.
T Consensus 314 ~i~k~ivG~ndEI----~Dm~~l------G~e~~~laVATNs~~lr~y~~~~~~c~------------------------ 359 (775)
T KOG0319|consen 314 TIVKQIVGYNDEI----LDMKFL------GPEESHLAVATNSPELRLYTLPTSYCQ------------------------ 359 (775)
T ss_pred EEehhhcCCchhh----eeeeec------CCccceEEEEeCCCceEEEecCCCceE------------------------
Confidence 3222222222222 334443 789999999999999999988876554
Q ss_pred cccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC----eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCC
Q 013827 191 SIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR 266 (436)
Q Consensus 191 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 266 (436)
.+.||++.|.++....+| -+|+||+.|.++++|.++.+ .++....+|...|.+++++..+..+|+++|.|.
T Consensus 360 ----ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~ 434 (775)
T KOG0319|consen 360 ----IIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDC 434 (775)
T ss_pred ----EEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCc
Confidence 255899999999965665 59999999999999988543 244556789999999999998889999999999
Q ss_pred cEEEEecCCCCCc--c-------ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEecc
Q 013827 267 SVVMKDARISTHS--G-------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH 337 (436)
Q Consensus 267 ~i~~wd~~~~~~~--~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 337 (436)
++++|++...+.. . ....|...|++++++|+. .++++|+.|.+.+||++... .....+.+|
T Consensus 435 tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~---------~l~~vLsGH 504 (775)
T KOG0319|consen 435 TLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQL---------RLLGVLSGH 504 (775)
T ss_pred eEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC-ceEEecccccceeeecccCc---------eEEEEeeCC
Confidence 9999999873221 1 123578899999999976 79999999999999999965 778999999
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 338 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 338 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
+..|.++.|+|.. ++++|+|.|++|+||.+.+.. ++.++.+|...|..+.|-.+|.. |++++.||.+++|++++++
T Consensus 505 ~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fS--ClkT~eGH~~aVlra~F~~~~~q-liS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 505 TRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFS--CLKTFEGHTSAVLRASFIRNGKQ-LISAGADGLIKLWNIKTNE 580 (775)
T ss_pred ccceEEEEecccc-ceeEeccCCceEEEEEeccce--eeeeecCccceeEeeeeeeCCcE-EEeccCCCcEEEEeccchh
Confidence 9999999999988 899999999999999999987 89999999999999999999995 9999999999999999999
Q ss_pred cccccccCCC
Q 013827 418 GISNRFSKYS 427 (436)
Q Consensus 418 ~~~~~~~~~~ 427 (436)
++.++=.|.+
T Consensus 581 C~~tlD~H~D 590 (775)
T KOG0319|consen 581 CEMTLDAHND 590 (775)
T ss_pred hhhhhhhccc
Confidence 9988766554
No 34
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.9e-34 Score=238.91 Aligned_cols=287 Identities=16% Similarity=0.272 Sum_probs=238.2
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
.+|.+.|.++++.|.+.++++|+.|+ .+.+|+...+.....+..|...+ ..+++|+...||.++
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~Dr-----tikIwDlatg~LkltltGhi~~v-----------r~vavS~rHpYlFs~ 211 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADR-----TIKIWDLATGQLKLTLTGHIETV-----------RGVAVSKRHPYLFSA 211 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCc-----eeEEEEcccCeEEEeecchhhee-----------eeeeecccCceEEEe
Confidence 47999999999999999999999997 66677776663222233332222 123448899999999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+.|+.|+.||++..+. +..+.||-..|.|++.+|.- ..|++|+.|.+++|||
T Consensus 212 gedk~VKCwDLe~nkv---------------------------IR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWD 263 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYNKV---------------------------IRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWD 263 (460)
T ss_pred cCCCeeEEEechhhhh---------------------------HHHhccccceeEEEeccccc-eeEEecCCcceEEEee
Confidence 9999999999975443 44477999999999999985 5999999999999999
Q ss_pred CCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCC
Q 013827 230 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG 309 (436)
Q Consensus 230 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg 309 (436)
+++...+..+.+|..+|.++.+.|.+ ..+++|+.|++|++||++.++.......|+..+.+++.+|.. +.+++++.|
T Consensus 264 iRtr~~V~~l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e-~~fASas~d- 340 (460)
T KOG0285|consen 264 IRTRASVHVLSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKE-NLFASASPD- 340 (460)
T ss_pred ecccceEEEecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCch-hhhhccCCc-
Confidence 99999999999999999999999988 679999999999999999999988888999999999999965 567777666
Q ss_pred cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEE---eeCC---CC
Q 013827 310 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA---SRNP---KA 383 (436)
Q Consensus 310 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~---~~ 383 (436)
.|+-|++..+ ..+..+.+|...|++++.+.|+ ++++|++.|.+.+||.+++...... ..++ ..
T Consensus 341 nik~w~~p~g---------~f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sE 409 (460)
T KOG0285|consen 341 NIKQWKLPEG---------EFLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESE 409 (460)
T ss_pred cceeccCCcc---------chhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccccccccCCccccc
Confidence 6899999987 6677799999999999999875 8999999999999999987532111 1111 23
Q ss_pred CcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 384 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 384 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
..|.+.+|...|. .|++|..|.+|++|.-..
T Consensus 410 agI~as~fDktg~-rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 410 AGIFASCFDKTGS-RLITGEADKTIKMYKEDE 440 (460)
T ss_pred cceeEEeecccCc-eEEeccCCcceEEEeccc
Confidence 4689999999998 599999999999997543
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.3e-35 Score=242.37 Aligned_cols=243 Identities=21% Similarity=0.295 Sum_probs=222.7
Q ss_pred CCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 139 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 139 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
|+|+-..+++++.|++|++||..+++.... +.||.+.|.+++|+..| .+|++
T Consensus 116 ~hp~~~~v~~as~d~tikv~D~~tg~~e~~---------------------------LrGHt~sv~di~~~a~G-k~l~t 167 (406)
T KOG0295|consen 116 FHPSEALVVSASEDATIKVFDTETGELERS---------------------------LRGHTDSVFDISFDASG-KYLAT 167 (406)
T ss_pred eccCceEEEEecCCceEEEEEccchhhhhh---------------------------hhccccceeEEEEecCc-cEEEe
Confidence 489999999999999999999998776443 77999999999999997 69999
Q ss_pred EeCCCcEEEEeCCC-CeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCC
Q 013827 219 ASADKQVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 297 (436)
Q Consensus 219 ~~~dg~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~ 297 (436)
++.|-.+++||.++ .++++.+.+|...|.++.|-|.| .++++++.|.+|+.|++.++-+...+.+|...+..++.+.|
T Consensus 168 cSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~D 246 (406)
T KOG0295|consen 168 CSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQD 246 (406)
T ss_pred cCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCC
Confidence 99999999999987 56778888999999999999999 99999999999999999999999988999999999999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCC--------------CCCEEEEEeCCCcE
Q 013827 298 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL--------------VPNLLATGSTDKMV 363 (436)
Q Consensus 298 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--------------~~~~l~~~~~d~~i 363 (436)
| .++++++.|.++++|-+.+. ++...+..|..+|-+++|.|. +..++.+++.|++|
T Consensus 247 G-ti~As~s~dqtl~vW~~~t~---------~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI 316 (406)
T KOG0295|consen 247 G-TIIASCSNDQTLRVWVVATK---------QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI 316 (406)
T ss_pred e-eEEEecCCCceEEEEEeccc---------hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence 8 69999999999999999987 667788899999999999873 22589999999999
Q ss_pred EEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccc
Q 013827 364 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 423 (436)
Q Consensus 364 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (436)
++||+.++. +++++.+|...|..++|+|.|+| |+++..|+++++||++++++.....
T Consensus 317 k~wdv~tg~--cL~tL~ghdnwVr~~af~p~Gky-i~ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 317 KIWDVSTGM--CLFTLVGHDNWVRGVAFSPGGKY-ILSCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred EEEeccCCe--EEEEEecccceeeeeEEcCCCeE-EEEEecCCcEEEEEeccceeeeccC
Confidence 999999997 88999999999999999999997 8899999999999999999987654
No 36
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=241.13 Aligned_cols=240 Identities=25% Similarity=0.402 Sum_probs=217.8
Q ss_pred CCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEE
Q 013827 137 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 216 (436)
Q Consensus 137 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 216 (436)
+++.|...+|++|+.|++|.|||+.+++... .+.||-..|..+++++-. .||
T Consensus 157 vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---------------------------tltGhi~~vr~vavS~rH-pYl 208 (460)
T KOG0285|consen 157 VAVDPGNEWFATGSADRTIKIWDLATGQLKL---------------------------TLTGHIETVRGVAVSKRH-PYL 208 (460)
T ss_pred EeeCCCceeEEecCCCceeEEEEcccCeEEE---------------------------eecchhheeeeeeecccC-ceE
Confidence 4558999999999999999999998765543 367899999999999985 599
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCC
Q 013827 217 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 296 (436)
Q Consensus 217 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~ 296 (436)
++++.|+.|+.||++.++.++.+.+|-+.|.+++.+|.- ..|++|+.|.++++||+|+...+..+.+|..+|.++.+.|
T Consensus 209 Fs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~ 287 (460)
T KOG0285|consen 209 FSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP 287 (460)
T ss_pred EEecCCCeeEEEechhhhhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec
Confidence 999999999999999999999999999999999999998 8999999999999999999999988889999999999998
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeE
Q 013827 297 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 376 (436)
Q Consensus 297 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 376 (436)
.++ .+++|+.|++|++||++.+ +....+..|...+.+++.+|.. ..+|+++.| .|+-|++..+. .+
T Consensus 288 ~dp-qvit~S~D~tvrlWDl~ag---------kt~~tlt~hkksvral~lhP~e-~~fASas~d-nik~w~~p~g~--f~ 353 (460)
T KOG0285|consen 288 TDP-QVITGSHDSTVRLWDLRAG---------KTMITLTHHKKSVRALCLHPKE-NLFASASPD-NIKQWKLPEGE--FL 353 (460)
T ss_pred CCC-ceEEecCCceEEEeeeccC---------ceeEeeecccceeeEEecCCch-hhhhccCCc-cceeccCCccc--hh
Confidence 775 6999999999999999998 6688889999999999999987 888888877 58999999887 55
Q ss_pred EeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 377 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 377 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
..+.+|..-|++++.+.|+ ++++|+.+|.+.+||.+++..-+.
T Consensus 354 ~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~ 396 (460)
T KOG0285|consen 354 QNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQR 396 (460)
T ss_pred hccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCccccc
Confidence 5688999999999999998 588899999999999999876554
No 37
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1e-34 Score=250.63 Aligned_cols=288 Identities=16% Similarity=0.286 Sum_probs=243.5
Q ss_pred CCCccccccceecc-CCceEEEEEecCCcceeEEEEEecCC-CCCCceeeecccccCcCcceeecccCCCCCCCCCcEEE
Q 013827 70 DEDSEDLEDMTINP-NDAVIVCARNEDDVSHLEVYILEESD-GGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA 147 (436)
Q Consensus 70 ~~~~~~v~~~~~sp-~~~~l~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 147 (436)
.+|...|.++.|.| .+.+|++++.++ .|++|+.-. .+....|.+|..++.. + .|+++|..|+
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~-----~vklW~vy~~~~~lrtf~gH~k~Vrd----~-------~~s~~g~~fL 274 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDG-----LVKLWNVYDDRRCLRTFKGHRKPVRD----A-------SFNNCGTSFL 274 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCc-----eEEEEEEecCcceehhhhcchhhhhh----h-------hccccCCeee
Confidence 47999999999999 899999999987 777776654 5566778888776643 3 3489999999
Q ss_pred EeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEE
Q 013827 148 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 227 (436)
Q Consensus 148 ~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~v 227 (436)
+++.|+.|++||++++++.... .-...++|+.|+|++.+.+++|+.|+.|+.
T Consensus 275 S~sfD~~lKlwDtETG~~~~~f----------------------------~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~ 326 (503)
T KOG0282|consen 275 SASFDRFLKLWDTETGQVLSRF----------------------------HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQ 326 (503)
T ss_pred eeecceeeeeeccccceEEEEE----------------------------ecCCCceeeecCCCCCcEEEEecCCCcEEE
Confidence 9999999999999998887653 234578999999998789999999999999
Q ss_pred EeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE-eeeCCeeEEEeCCCCCcEEEEEe
Q 013827 228 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSL 306 (436)
Q Consensus 228 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~ 306 (436)
||+++++.++.+..|-+.|..+.|-+++ ..+++++.|+++++|+.+.+..+.... .......++..+|++ .++++=+
T Consensus 327 wDiRs~kvvqeYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~-~~~~aQs 404 (503)
T KOG0282|consen 327 WDIRSGKVVQEYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNG-KWFAAQS 404 (503)
T ss_pred EeccchHHHHHHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCC-Ceehhhc
Confidence 9999999999999999999999999999 899999999999999999887665433 345567889999987 5888899
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCcccEEEeccC--CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCC
Q 013827 307 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD--KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG 384 (436)
Q Consensus 307 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 384 (436)
.|+.|.+|.+...-. ......+.+|. +.-..+.||||| .+|++|+.||.+.+||.++.+ .+..+..|.+
T Consensus 405 ~dN~i~ifs~~~~~r------~nkkK~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt~k--l~~~lkah~~ 475 (503)
T KOG0282|consen 405 MDNYIAIFSTVPPFR------LNKKKRFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKTTK--LVSKLKAHDQ 475 (503)
T ss_pred cCceEEEEecccccc------cCHhhhhcceeccCceeeEEEcCCC-CeEEeecCCccEEEeechhhh--hhhccccCCc
Confidence 999999998754311 12234455664 567789999999 999999999999999999987 4667788999
Q ss_pred cEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 013827 385 AVFSVAFSEDSPFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 385 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd 412 (436)
++..+.|+|.....+|+++.||.|++|+
T Consensus 476 ~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 476 PCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999998877899999999999996
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.7e-35 Score=244.27 Aligned_cols=278 Identities=20% Similarity=0.372 Sum_probs=234.0
Q ss_pred CccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeC
Q 013827 72 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 151 (436)
Q Consensus 72 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 151 (436)
....|+++++ |+..+++|..++ .|.+|+.........+.+|... ++|+++ +.+.+++|+.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDn-----TikiWD~n~~~c~~~L~GHtGS----VLCLqy---------d~rviisGSS 255 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDN-----TIKIWDKNSLECLKILTGHTGS----VLCLQY---------DERVIVSGSS 255 (499)
T ss_pred cCCceEEEEe--cchhhhcccccC-----ceEEeccccHHHHHhhhcCCCc----EEeeec---------cceEEEecCC
Confidence 4566777776 455688888887 7777877765555555666433 489988 6789999999
Q ss_pred CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCC
Q 013827 152 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 231 (436)
Q Consensus 152 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~ 231 (436)
|.+|+|||+++++++.. +-+|.+.|..+.|+.. ++++++.|.++.+||+.
T Consensus 256 DsTvrvWDv~tge~l~t---------------------------lihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~ 305 (499)
T KOG0281|consen 256 DSTVRVWDVNTGEPLNT---------------------------LIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMA 305 (499)
T ss_pred CceEEEEeccCCchhhH---------------------------HhhhcceeEEEEEeCC---EEEEecCCceeEEEecc
Confidence 99999999999887765 5579999999999863 89999999999999998
Q ss_pred CCe---EEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCC
Q 013827 232 AGK---CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED 308 (436)
Q Consensus 232 ~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d 308 (436)
... +.+.+.+|...|+.+.|+. .++++++.|.+|++|++.+...+....+|+..|.++.+.. .++++|+.|
T Consensus 306 sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~---rlvVSGSSD 379 (499)
T KOG0281|consen 306 SPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSD 379 (499)
T ss_pred CchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhhhcccccceehhccC---eEEEecCCC
Confidence 654 2345678999999999974 6899999999999999999999999999999999998863 799999999
Q ss_pred CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc-------eeEEeeCC
Q 013827 309 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-------SCIASRNP 381 (436)
Q Consensus 309 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~ 381 (436)
.+|++||+..+ .++..+++|..-|.++.|.. ..+++|+.||+|++||+..... .++.....
T Consensus 380 ntIRlwdi~~G---------~cLRvLeGHEeLvRciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~ 447 (499)
T KOG0281|consen 380 NTIRLWDIECG---------ACLRVLEGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE 447 (499)
T ss_pred ceEEEEecccc---------HHHHHHhchHHhhhheeecC---ceeeeccccceEEEEecccccCCcccccchHHHhhhh
Confidence 99999999988 77999999999999999985 7899999999999999987542 25556677
Q ss_pred CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccc
Q 013827 382 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 420 (436)
Q Consensus 382 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (436)
|.+.|..+.|..- .+++++.|.+|.|||+.++-.-.
T Consensus 448 hsgRVFrLQFD~f---qIvsssHddtILiWdFl~~~~~~ 483 (499)
T KOG0281|consen 448 HSGRVFRLQFDEF---QIISSSHDDTILIWDFLNGPPSA 483 (499)
T ss_pred ccceeEEEeecce---EEEeccCCCeEEEEEcCCCCccc
Confidence 8999999999653 47889999999999998876653
No 39
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-32 Score=249.92 Aligned_cols=294 Identities=17% Similarity=0.257 Sum_probs=235.0
Q ss_pred ccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCC
Q 013827 73 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME 152 (436)
Q Consensus 73 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 152 (436)
+..|..++|+..|.+||.|+.. .+.+-||.|..+. |...+.....-..|+++ ||||+++|+|+.|
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~~k--lgQLlVweWqsEs------YVlKQQgH~~~i~~l~Y-------SpDgq~iaTG~eD 371 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGCSK--LGQLLVWEWQSES------YVLKQQGHSDRITSLAY-------SPDGQLIATGAED 371 (893)
T ss_pred cceeeEEEecccCCEEEEcCCc--cceEEEEEeeccc------eeeeccccccceeeEEE-------CCCCcEEEeccCC
Confidence 4578999999999999999765 3446666665543 22222222222356776 9999999999999
Q ss_pred CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 153 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 232 (436)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~ 232 (436)
|.|+|||..++-+..+ +..|+..|+.+.|+..| +.+++++.||+|+.||+..
T Consensus 372 gKVKvWn~~SgfC~vT---------------------------FteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 372 GKVKVWNTQSGFCFVT---------------------------FTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred CcEEEEeccCceEEEE---------------------------eccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecc
Confidence 9999999976555443 66899999999999996 6999999999999999999
Q ss_pred CeEEEEEccc-CCCeEEEEEcCCCCCEEEEEECCC-cEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCc
Q 013827 233 GKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDR-SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT 310 (436)
Q Consensus 233 ~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~ 310 (436)
.+..+++... .-...|++..|.| .++.+|+.|. .|.+|++++++....+.+|.++|.+++|+|.+ ..+++++.|.+
T Consensus 424 YrNfRTft~P~p~QfscvavD~sG-elV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~-~~LaS~SWDkT 501 (893)
T KOG0291|consen 424 YRNFRTFTSPEPIQFSCVAVDPSG-ELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG-SLLASGSWDKT 501 (893)
T ss_pred cceeeeecCCCceeeeEEEEcCCC-CEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc-CeEEeccccce
Confidence 9988888643 3356788999999 8888888887 59999999999999999999999999999988 59999999999
Q ss_pred EEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCce----------------
Q 013827 311 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS---------------- 374 (436)
Q Consensus 311 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~---------------- 374 (436)
|++||+-... ..+.++ .+...+..++|.|+| .-|++++-||.|.+||.......
T Consensus 502 VRiW~if~s~--------~~vEtl-~i~sdvl~vsfrPdG-~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~ 571 (893)
T KOG0291|consen 502 VRIWDIFSSS--------GTVETL-EIRSDVLAVSFRPDG-KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKET 571 (893)
T ss_pred EEEEEeeccC--------ceeeeE-eeccceeEEEEcCCC-CeEEEEEecceEEEEEhhhceeeccccchhhcccccccc
Confidence 9999987651 223333 467789999999999 89999999999999998754311
Q ss_pred --eEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 375 --CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 375 --~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
............+.+++++||.+ +++||....|++|++.++-.+++.
T Consensus 572 D~~ta~~sa~~K~Ftti~ySaDG~~-IlAgG~sn~iCiY~v~~~vllkkf 620 (893)
T KOG0291|consen 572 DRITAENSAKGKTFTTICYSADGKC-ILAGGESNSICIYDVPEGVLLKKF 620 (893)
T ss_pred ceeehhhcccCCceEEEEEcCCCCE-EEecCCcccEEEEECchhheeeeE
Confidence 01111122347899999999995 677999999999999998777653
No 40
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-33 Score=241.66 Aligned_cols=291 Identities=22% Similarity=0.304 Sum_probs=230.6
Q ss_pred CCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEE
Q 013827 69 DDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV 148 (436)
Q Consensus 69 ~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 148 (436)
..++...|.+++|||..++=++.... .++.+|........+.+....... +...|-.||++||+
T Consensus 22 ~~ke~~~vssl~fsp~~P~d~aVt~S-----~rvqly~~~~~~~~k~~srFk~~v-----------~s~~fR~DG~Llaa 85 (487)
T KOG0310|consen 22 VHKEHNSVSSLCFSPKHPYDFAVTSS-----VRVQLYSSVTRSVRKTFSRFKDVV-----------YSVDFRSDGRLLAA 85 (487)
T ss_pred cccccCcceeEecCCCCCCceEEecc-----cEEEEEecchhhhhhhHHhhccce-----------eEEEeecCCeEEEc
Confidence 34556789999999987754443333 278888776543333222222111 22334789999999
Q ss_pred eeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEE
Q 013827 149 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 228 (436)
Q Consensus 149 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vw 228 (436)
|...|.|+|+|+.+ ......+.+|+.+|..+.|+|.+...+++|+.|+.+++|
T Consensus 86 GD~sG~V~vfD~k~---------------------------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~ 138 (487)
T KOG0310|consen 86 GDESGHVKVFDMKS---------------------------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYW 138 (487)
T ss_pred cCCcCcEEEecccc---------------------------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEE
Confidence 99999999999653 334445778999999999999988899999999999999
Q ss_pred eCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCC
Q 013827 229 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED 308 (436)
Q Consensus 229 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d 308 (436)
|+.+......+.+|++.|.|.+|+|..+.++++|++||.|++||++..........|..+|..+.+-|.| .++++++ .
T Consensus 139 d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsg-s~iasAg-G 216 (487)
T KOG0310|consen 139 DLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSG-SLIASAG-G 216 (487)
T ss_pred EcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCC-CEEEEcC-C
Confidence 9999887668899999999999999887899999999999999999987666678899999999999976 4666665 4
Q ss_pred CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEE
Q 013827 309 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS 388 (436)
Q Consensus 309 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 388 (436)
..+++||+.++ .+.+..+..|...|+|+.+..++ ..|++|+-|+.|++||+.+.+. +.... -.++|.+
T Consensus 217 n~vkVWDl~~G--------~qll~~~~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~Kv--v~s~~-~~~pvLs 284 (487)
T KOG0310|consen 217 NSVKVWDLTTG--------GQLLTSMFNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNYKV--VHSWK-YPGPVLS 284 (487)
T ss_pred CeEEEEEecCC--------ceehhhhhcccceEEEEEeecCC-ceEeecccccceEEEEccceEE--EEeee-cccceee
Confidence 57999999977 25555666699999999999988 8999999999999999777663 33332 3569999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 389 VAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 389 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
++.+|+++. ++.|-.+|.+.+=+...++
T Consensus 285 iavs~dd~t-~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 285 IAVSPDDQT-VVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred EEecCCCce-EEEecccceeeeehhhccc
Confidence 999999984 8889999988777554433
No 41
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-33 Score=256.37 Aligned_cols=289 Identities=17% Similarity=0.302 Sum_probs=235.3
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEee
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 150 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 150 (436)
..+..|..++|+|..++++++-..+. +++|.|.. +.....+-.|+.++.. +.|+|++.+|++|+
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~---IQlWDYRM--~tli~rFdeHdGpVRg-----------v~FH~~qplFVSGG 70 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGV---IQLWDYRM--GTLIDRFDEHDGPVRG-----------VDFHPTQPLFVSGG 70 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCce---eeeehhhh--hhHHhhhhccCCccce-----------eeecCCCCeEEecC
Confidence 44678999999999999999988863 25555544 3334445666666533 33499999999999
Q ss_pred CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 013827 151 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 230 (436)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~ 230 (436)
.|-.|+||+..+.+++ +++.||-+-|..+.|++.- ..++|+|.|.+|+||+.
T Consensus 71 DDykIkVWnYk~rrcl---------------------------ftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNw 122 (1202)
T KOG0292|consen 71 DDYKIKVWNYKTRRCL---------------------------FTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNW 122 (1202)
T ss_pred CccEEEEEecccceeh---------------------------hhhccccceeEEeeccCCC-ceEEEccCCCeEEEEec
Confidence 9999999999764444 4477999999999999996 59999999999999999
Q ss_pred CCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCC-----------------------------ccc
Q 013827 231 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-----------------------------SGF 281 (436)
Q Consensus 231 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------------------------~~~ 281 (436)
++++++..+.+|...|.|.+|+|.. .+++++|.|.+|++||+...+. ...
T Consensus 123 qsr~~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 123 QSRKCIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV 201 (1202)
T ss_pred cCCceEEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence 9999999999999999999999988 8999999999999999853211 012
Q ss_pred eEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCC
Q 013827 282 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK 361 (436)
Q Consensus 282 ~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~ 361 (436)
..+|...|+-++|+|.-+ ++++|++|..|++|.+...+. -.+.+..+|...|.++-|+|.. .++++.++|+
T Consensus 202 LEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKa-------WEvDtcrgH~nnVssvlfhp~q-~lIlSnsEDk 272 (1202)
T KOG0292|consen 202 LEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKA-------WEVDTCRGHYNNVSSVLFHPHQ-DLILSNSEDK 272 (1202)
T ss_pred ecccccccceEEecCCcc-eEEecCCcceeeEEEeccccc-------eeehhhhcccCCcceEEecCcc-ceeEecCCCc
Confidence 236778899999999774 899999999999999987632 2255678999999999999987 8999999999
Q ss_pred cEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 362 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 362 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
+|++||+...+ .+..+....+..+.++-+|... +++ ++.|+-+.||.+....
T Consensus 273 sirVwDm~kRt--~v~tfrrendRFW~laahP~lN-LfA-AgHDsGm~VFkleREr 324 (1202)
T KOG0292|consen 273 SIRVWDMTKRT--SVQTFRRENDRFWILAAHPELN-LFA-AGHDSGMIVFKLERER 324 (1202)
T ss_pred cEEEEeccccc--ceeeeeccCCeEEEEEecCCcc-eee-eecCCceEEEEEcccC
Confidence 99999999887 4555555566899999999998 566 5566667777776443
No 42
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.7e-35 Score=241.90 Aligned_cols=234 Identities=25% Similarity=0.456 Sum_probs=206.7
Q ss_pred CcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccce
Q 013827 124 PAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV 203 (436)
Q Consensus 124 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 203 (436)
...+.|+++ |...+++|..|.+|+|||.++..+.. .+.||++.|
T Consensus 197 skgVYClQY---------DD~kiVSGlrDnTikiWD~n~~~c~~---------------------------~L~GHtGSV 240 (499)
T KOG0281|consen 197 SKGVYCLQY---------DDEKIVSGLRDNTIKIWDKNSLECLK---------------------------ILTGHTGSV 240 (499)
T ss_pred CCceEEEEe---------cchhhhcccccCceEEeccccHHHHH---------------------------hhhcCCCcE
Confidence 344678887 77789999999999999998755544 367999999
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc---c
Q 013827 204 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS---G 280 (436)
Q Consensus 204 ~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~ 280 (436)
.|+.|.. ..+++|+.|.+|+|||+++++++.++-+|...|..+.|+. .++++++.|.++.+||+..+..+ .
T Consensus 241 LCLqyd~---rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rr 314 (499)
T KOG0281|consen 241 LCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRR 314 (499)
T ss_pred Eeeeccc---eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHH
Confidence 9999974 3899999999999999999999999999999999999984 68999999999999999877644 3
Q ss_pred ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCC
Q 013827 281 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD 360 (436)
Q Consensus 281 ~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 360 (436)
.+.+|...|+.+.|+. +++++++.|.+|++|++.+. ..+.++.+|...|.|+.+. ++++++|+.|
T Consensus 315 VLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~---------efvRtl~gHkRGIAClQYr---~rlvVSGSSD 379 (499)
T KOG0281|consen 315 VLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTC---------EFVRTLNGHKRGIACLQYR---DRLVVSGSSD 379 (499)
T ss_pred HHhhhhhheeeecccc---ceEEEecCCceEEEEeccce---------eeehhhhcccccceehhcc---CeEEEecCCC
Confidence 4568899999999986 69999999999999999998 7799999999999999987 3899999999
Q ss_pred CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccc
Q 013827 361 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 419 (436)
Q Consensus 361 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (436)
.+|++||+..+. ++..+++|..-|.++.|... .+++|+.||+|+|||+..+...
T Consensus 380 ntIRlwdi~~G~--cLRvLeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 380 NTIRLWDIECGA--CLRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred ceEEEEeccccH--HHHHHhchHHhhhheeecCc---eeeeccccceEEEEecccccCC
Confidence 999999999998 67778999999999999754 4899999999999999877654
No 43
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=3.5e-32 Score=233.69 Aligned_cols=251 Identities=22% Similarity=0.390 Sum_probs=215.5
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
..+...+|+++..+.|.|||.......... .....+...+.+|...-++++|++.....|+++
T Consensus 134 PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~-----------------~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 134 PQNPNIVATKTSSGDVYVFDYTKHPSKPKA-----------------SGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred CCCCcEEEecCCCCCEEEEEeccCCCcccc-----------------cccCCCceEEEeecccccccccccccceeEeec
Confidence 446778889999999999998754332210 012445556789999889999999877799999
Q ss_pred eCCCcEEEEeCCCC-------eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC--CCCCccceEeeeCCee
Q 013827 220 SADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR--ISTHSGFKWAVAADVE 290 (436)
Q Consensus 220 ~~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~i~ 290 (436)
+.|++|++||+... .+...+.+|...|..++|++....+|++++.|+.+.|||+| +.+.......|.+.+.
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn 276 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN 276 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence 99999999999753 23456789999999999999887899999999999999999 4555556678999999
Q ss_pred EEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 013827 291 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 291 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~ 370 (436)
+++|+|.++.+||+|+.|++|++||+|+.+ .++..+.+|...|.++.|+|.....||+++.|+.+.+||+..
T Consensus 277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKTVALWDLRNLN--------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred EEEeCCCCCceEEeccCCCcEEEeechhcc--------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 999999999999999999999999999983 678999999999999999999889999999999999999864
Q ss_pred ------------CCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 371 ------------NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 371 ------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
+.+..++...+|...|..+.|+|+.++++++.+.|+.+.||.+..
T Consensus 349 ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 349 IGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 223456888999999999999999999999999999999999863
No 44
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.5e-32 Score=229.15 Aligned_cols=291 Identities=21% Similarity=0.320 Sum_probs=236.9
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEee
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 150 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 150 (436)
-|++.|.++... ++.+++|+.++ .+.+|+.... ...+...|..++. .++|+.. ++....|++++
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg-----~~riWd~~Gk-~~~~~~Ght~~ik----~v~~v~~----n~~~~~fvsas 166 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDG-----TSRIWDLKGK-SIKTIVGHTGPIK----SVAWVIK----NSSSCLFVSAS 166 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCC-----eeEEEecCCc-eEEEEecCCccee----eeEEEec----CCccceEEEec
Confidence 578999999988 78999999997 6677766653 3345566655553 3556422 34455899999
Q ss_pred CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 013827 151 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 230 (436)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~ 230 (436)
.|.++++|.++.++.... ....-.||...|-+++..++| ..+++|+.|.+|.||+.
T Consensus 167 ~Dqtl~Lw~~~~~~~~~~-----------------------~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~ 222 (423)
T KOG0313|consen 167 MDQTLRLWKWNVGENKVK-----------------------ALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSV 222 (423)
T ss_pred CCceEEEEEecCchhhhh-----------------------HHhHhcccccceeEEEecCCC-CeEEeecccceeeeccc
Confidence 999999999986554321 111223899999999999997 69999999999999993
Q ss_pred C-------------------------CCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEee
Q 013827 231 A-------------------------AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV 285 (436)
Q Consensus 231 ~-------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 285 (436)
+ ++.++..+.+|..+|.++.|++. ..+.+++.|.+|+.||+.++.... ....
T Consensus 223 ~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~-~~~~ 299 (423)
T KOG0313|consen 223 ETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKS-TLTT 299 (423)
T ss_pred CCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeeccccee-eeec
Confidence 2 12345678899999999999984 579999999999999999988776 4455
Q ss_pred eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 013827 286 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL 365 (436)
Q Consensus 286 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~i 365 (436)
+..++++..+|.. .++++|+.|..+++||.|++.. ....+++.+|...|.++.|+|..+..|++|+.|+++++
T Consensus 300 ~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~g------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~kl 372 (423)
T KOG0313|consen 300 NKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDG------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKL 372 (423)
T ss_pred CcceeEeeccccc-ceeeecCCCCceeecCCCCCCC------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEE
Confidence 6789999999965 7999999999999999998842 24467889999999999999999899999999999999
Q ss_pred EECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 366 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 366 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
||+++.+. .++.+.+|...|.++.|...+ ++++||.|.+|+|+.-.
T Consensus 373 WDvRS~k~-plydI~~h~DKvl~vdW~~~~--~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 373 WDVRSTKA-PLYDIAGHNDKVLSVDWNEGG--LIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEeccCCC-cceeeccCCceEEEEeccCCc--eEEeccCcceEEEeccc
Confidence 99998762 577788999999999998765 59999999999998654
No 45
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.5e-32 Score=255.65 Aligned_cols=249 Identities=26% Similarity=0.420 Sum_probs=212.1
Q ss_pred CCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEE
Q 013827 138 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 217 (436)
Q Consensus 138 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 217 (436)
.|+++|++|++++.++.+++|+...... .....+.+|...|.+++|+|++ .+++
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------~~~~~l~~h~~~v~~~~fs~d~-~~l~ 219 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------NLLRELSGHTRGVSDVAFSPDG-SYLL 219 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeecccccc-------------------------hhhccccccccceeeeEECCCC-cEEE
Confidence 4599999999999999999999954331 1222246899999999999997 5999
Q ss_pred EEeCCCcEEEEeC-CCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCC
Q 013827 218 SASADKQVKIWDV-AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 296 (436)
Q Consensus 218 s~~~dg~v~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~ 296 (436)
+++.|++|+|||+ ..+..++++.+|...|++++|+|++ +++++|+.|++|++||+++++....+..|...|++++|++
T Consensus 220 s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 220 SGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP 298 (456)
T ss_pred EecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC
Confidence 9999999999999 5558899999999999999999999 9999999999999999999998888899999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCC--eEEEEecCCCCCEEEEEeCCCcEEEEECCCCCce
Q 013827 297 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS 374 (436)
Q Consensus 297 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~ 374 (436)
++ .++++++.|+.|++||+.++.. .+...+..+... ++++.|+|++ .++++++.|+.+++||+....
T Consensus 299 d~-~~l~s~s~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~-- 367 (456)
T KOG0266|consen 299 DG-NLLVSASYDGTIRVWDLETGSK-------LCLKLLSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGK-- 367 (456)
T ss_pred CC-CEEEEcCCCccEEEEECCCCce-------eeeecccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCc--
Confidence 88 6888889999999999998831 034455555544 9999999999 999999999999999999877
Q ss_pred eEEeeCCCCC---cEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccC
Q 013827 375 CIASRNPKAG---AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 425 (436)
Q Consensus 375 ~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (436)
......+|.. .+.+...++.+. .+++|+.|+.|++||+.++..+.....+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 368 SVGTYTGHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred ceeeecccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 4555556654 344556678888 5899999999999999998887776666
No 46
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-33 Score=222.24 Aligned_cols=242 Identities=22% Similarity=0.355 Sum_probs=209.3
Q ss_pred CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 013827 151 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 230 (436)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~ 230 (436)
..|++.|.++.....+.....+ .-.+.+..++|++...+.+++++.||++++||+
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~-------------------------d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSY-------------------------DTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cCceEEEEecCCCCCeEEEEee-------------------------ecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 3689999998744443332211 356789999999998889999999999999996
Q ss_pred CC-CeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCC
Q 013827 231 AA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG 309 (436)
Q Consensus 231 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg 309 (436)
.. ..++..++.|...|.++.|++..+..+++++.|++|++|+...+..+..+.+|...|...+|+|..++++++++.|+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 53 35788899999999999999987788999999999999999999888888899999999999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEE
Q 013827 310 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV 389 (436)
Q Consensus 310 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 389 (436)
.+++||++.. .+ ...+..|...+.++.|+...+++|+||+.|+.|+.||++.-+ ..+..+.+|.-.|+.+
T Consensus 171 ~l~lwdvr~~--------gk-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-~pl~eL~gh~~AVRkv 240 (311)
T KOG0277|consen 171 TLRLWDVRSP--------GK-FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-TPLFELNGHGLAVRKV 240 (311)
T ss_pred eEEEEEecCC--------Cc-eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc-ccceeecCCceEEEEE
Confidence 9999999987 23 334889999999999999888999999999999999999865 3577789999999999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccCCC
Q 013827 390 AFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 427 (436)
Q Consensus 390 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (436)
+|||....+|++++.|-+++|||...+....+...++.
T Consensus 241 k~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht 278 (311)
T KOG0277|consen 241 KFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT 278 (311)
T ss_pred ecCcchhhHhhhccccceEEecccccchhhhhhhhccc
Confidence 99998887999999999999999998877666665543
No 47
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.5e-32 Score=229.35 Aligned_cols=306 Identities=14% Similarity=0.243 Sum_probs=239.9
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
..|.+.|.+++.+|+.+++++|+.|+ .-++|+..++........|...+ +|+.| |.+|.+||+|
T Consensus 61 ~~H~~svFavsl~P~~~l~aTGGgDD-----~AflW~~~~ge~~~eltgHKDSV----t~~~F-------shdgtlLATG 124 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNNNLVATGGGDD-----LAFLWDISTGEFAGELTGHKDSV----TCCSF-------SHDGTLLATG 124 (399)
T ss_pred hhcCCceEEEEeCCCCceEEecCCCc-----eEEEEEccCCcceeEecCCCCce----EEEEE-------ccCceEEEec
Confidence 46889999999999999999999888 88899998886555556665443 56766 8999999999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+.+|.|+||...++....+ +...-..|.-+.|+|.+ .+|+.|+.||.+.+|.
T Consensus 125 dmsG~v~v~~~stg~~~~~---------------------------~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ 176 (399)
T KOG0296|consen 125 DMSGKVLVFKVSTGGEQWK---------------------------LDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQ 176 (399)
T ss_pred CCCccEEEEEcccCceEEE---------------------------eecccCceEEEEecccc-cEEEeecCCCcEEEEE
Confidence 9999999999987655443 22345678889999986 6999999999999999
Q ss_pred CCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEe-eeCCeeEEEeCCCCCcEEEEEeCC
Q 013827 230 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-VAADVESLAWDPHAEHSFVVSLED 308 (436)
Q Consensus 230 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~d 308 (436)
+.++...+.+.+|+.++++=.|.|+| +.++++..||+|++||+.+..+...... ......++.++..+ ..++.|..+
T Consensus 177 ip~~~~~kv~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~-~~~~~g~~e 254 (399)
T KOG0296|consen 177 IPSQALCKVMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAG-STLTKGNSE 254 (399)
T ss_pred CCCcceeeEecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccccc-ceeEeccCC
Confidence 99988889999999999999999999 8999999999999999999876543332 24456777777766 578888999
Q ss_pred CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCC--CEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcE
Q 013827 309 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP--NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAV 386 (436)
Q Consensus 309 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 386 (436)
+.+++-...+++......... ......+...+.++.+.|... .+.|+|+-||+|.|||+.... +...-.|..+|
T Consensus 255 ~~~~~~~~~sgKVv~~~n~~~-~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~---~R~~c~he~~V 330 (399)
T KOG0296|consen 255 GVACGVNNGSGKVVNCNNGTV-PELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST---LRHICEHEDGV 330 (399)
T ss_pred ccEEEEccccceEEEecCCCC-ccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch---hheeccCCCce
Confidence 988888877764321111001 111123444555555555321 478899999999999999876 33344577789
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccCCC
Q 013827 387 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 427 (436)
Q Consensus 387 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (436)
..+.|.+ ..+ |++++.+|.|+.||.++|+++..+.++..
T Consensus 331 ~~l~w~~-t~~-l~t~c~~g~v~~wDaRtG~l~~~y~GH~~ 369 (399)
T KOG0296|consen 331 TKLKWLN-TDY-LLTACANGKVRQWDARTGQLKFTYTGHQM 369 (399)
T ss_pred EEEEEcC-cch-heeeccCceEEeeeccccceEEEEecCch
Confidence 9999999 554 78899999999999999999988877764
No 48
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-32 Score=215.93 Aligned_cols=237 Identities=23% Similarity=0.374 Sum_probs=201.8
Q ss_pred CCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEE
Q 013827 138 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 217 (436)
Q Consensus 138 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 217 (436)
.|+-||+|.++++.|.+|++|+...+..+ ..+.+|..+|..++.+.|. ..++
T Consensus 24 ryN~dGnY~ltcGsdrtvrLWNp~rg~li---------------------------ktYsghG~EVlD~~~s~Dn-skf~ 75 (307)
T KOG0316|consen 24 RYNVDGNYCLTCGSDRTVRLWNPLRGALI---------------------------KTYSGHGHEVLDAALSSDN-SKFA 75 (307)
T ss_pred EEccCCCEEEEcCCCceEEeeccccccee---------------------------eeecCCCceeeeccccccc-cccc
Confidence 34889999999999999999998654444 4477999999999999995 6899
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC--CccceEeeeCCeeEEEeC
Q 013827 218 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST--HSGFKWAVAADVESLAWD 295 (436)
Q Consensus 218 s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~i~~~~~~ 295 (436)
+|+.|..+.+||+++|+.++.+.+|...|+.++|+.+. ..+++|+.|.++++||-+... +++.+......|.++..+
T Consensus 76 s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~ 154 (307)
T KOG0316|consen 76 SCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA 154 (307)
T ss_pred cCCCCceEEEEEcccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec
Confidence 99999999999999999999999999999999999998 899999999999999998654 445555677889999987
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCcee
Q 013827 296 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 375 (436)
Q Consensus 296 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~ 375 (436)
. ..+++|+.||+++.||++.+. ....-...+|+++.|++++ +..++++.|+++++.|-.+++.
T Consensus 155 ~---heIvaGS~DGtvRtydiR~G~-----------l~sDy~g~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGkl-- 217 (307)
T KOG0316|consen 155 E---HEIVAGSVDGTVRTYDIRKGT-----------LSSDYFGHPITSVSFSKDG-NCSLASSLDSTLRLLDKETGKL-- 217 (307)
T ss_pred c---cEEEeeccCCcEEEEEeecce-----------eehhhcCCcceeEEecCCC-CEEEEeeccceeeecccchhHH--
Confidence 5 579999999999999999882 2333456789999999999 8999999999999999999984
Q ss_pred EEeeCCCCCc--EEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 376 IASRNPKAGA--VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 376 ~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
+....+|... -..++++.... .+++|+.||.|++||+.....+..
T Consensus 218 L~sYkGhkn~eykldc~l~qsdt-hV~sgSEDG~Vy~wdLvd~~~~sk 264 (307)
T KOG0316|consen 218 LKSYKGHKNMEYKLDCCLNQSDT-HVFSGSEDGKVYFWDLVDETQISK 264 (307)
T ss_pred HHHhcccccceeeeeeeecccce-eEEeccCCceEEEEEeccceeeee
Confidence 4455666543 34556777666 489999999999999998877654
No 49
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.7e-33 Score=231.66 Aligned_cols=290 Identities=16% Similarity=0.272 Sum_probs=239.0
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeec--ccccCcCcceeecccCCCCCCCCCcEEEE
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHH--HIIIPAFPLCMAWLDCPLKDREKGNFMAV 148 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 148 (436)
+....+.+..|||||++|++|+.|+ .+.||.|-...-+....|... -.+....++|+.| |.|...||+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDG---FiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~F-------SRDsEMlAs 280 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDG---FIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISF-------SRDSEMLAS 280 (508)
T ss_pred ccccchhheeeCCCCceEeeccccc---eeeeehhccchhhhhhhhhhhcceeecccceEEEee-------cccHHHhhc
Confidence 5567899999999999999999886 346666544332211122221 1233445678776 899999999
Q ss_pred eeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEE
Q 013827 149 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 228 (436)
Q Consensus 149 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vw 228 (436)
|+.||.|+||.+.++.+++.+ ...|+..|+|+.|+.|+ ..+++++.|.++++.
T Consensus 281 GsqDGkIKvWri~tG~ClRrF--------------------------drAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiH 333 (508)
T KOG0275|consen 281 GSQDGKIKVWRIETGQCLRRF--------------------------DRAHTKGVTCLSFSRDN-SQILSASFDQTVRIH 333 (508)
T ss_pred cCcCCcEEEEEEecchHHHHh--------------------------hhhhccCeeEEEEccCc-chhhcccccceEEEe
Confidence 999999999999999988753 22799999999999996 588899999999999
Q ss_pred eCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE--eeeCCeeEEEeCCCCCcEEEEEe
Q 013827 229 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--AVAADVESLAWDPHAEHSFVVSL 306 (436)
Q Consensus 229 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~ 306 (436)
-+.+|++++.+.+|++.|+...|.++| +.+++++.||+|++|+..+.++...+. +...+|+++..-|.++..++++.
T Consensus 334 GlKSGK~LKEfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN 412 (508)
T KOG0275|consen 334 GLKSGKCLKEFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN 412 (508)
T ss_pred ccccchhHHHhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc
Confidence 999999999999999999999999999 899999999999999999988876544 34567899999998888999999
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCcccEEEec---cCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCC
Q 013827 307 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHA---HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA 383 (436)
Q Consensus 307 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 383 (436)
..+++.+.++.. +.+..+.. ..+...+...+|.| .++++.++|+.++.|.+.+++ ....+..|.
T Consensus 413 rsntv~imn~qG----------QvVrsfsSGkREgGdFi~~~lSpkG-ewiYcigED~vlYCF~~~sG~--LE~tl~VhE 479 (508)
T KOG0275|consen 413 RSNTVYIMNMQG----------QVVRSFSSGKREGGDFINAILSPKG-EWIYCIGEDGVLYCFSVLSGK--LERTLPVHE 479 (508)
T ss_pred CCCeEEEEeccc----------eEEeeeccCCccCCceEEEEecCCC-cEEEEEccCcEEEEEEeecCc--eeeeeeccc
Confidence 999999999874 33444432 23456677889998 899999999999999999998 455667788
Q ss_pred CcEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 013827 384 GAVFSVAFSEDSPFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 384 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 412 (436)
..+..++-+|... ++|+-+.||.+++|.
T Consensus 480 kdvIGl~HHPHqN-llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 480 KDVIGLTHHPHQN-LLASYSEDGLLKLWK 507 (508)
T ss_pred ccccccccCcccc-hhhhhcccchhhhcC
Confidence 8899999999988 799999999999995
No 50
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-31 Score=239.26 Aligned_cols=279 Identities=23% Similarity=0.385 Sum_probs=230.7
Q ss_pred cceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEE
Q 013827 78 DMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI 157 (436)
Q Consensus 78 ~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v 157 (436)
=++|+ ..+.||+|... .|++|+...+....+ .+.. ...+.++.| +++|.+||+|..+|.|.|
T Consensus 182 lldWs-s~n~laValg~------~vylW~~~s~~v~~l---~~~~-~~~vtSv~w-------s~~G~~LavG~~~g~v~i 243 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALGQ------SVYLWSASSGSVTEL---CSFG-EELVTSVKW-------SPDGSHLAVGTSDGTVQI 243 (484)
T ss_pred Hhhcc-cCCeEEEEecc------eEEEEecCCCceEEe---EecC-CCceEEEEE-------CCCCCEEEEeecCCeEEE
Confidence 37888 55677777655 899999888732222 2222 455677888 899999999999999999
Q ss_pred EeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccC-cccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEE
Q 013827 158 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS-HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN 236 (436)
Q Consensus 158 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~ 236 (436)
||..+.+.... +.+ |...|-+++|.. ..+.+|+.|+.|..+|++..+..
T Consensus 244 wD~~~~k~~~~---------------------------~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 244 WDVKEQKKTRT---------------------------LRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred Eehhhcccccc---------------------------ccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhh
Confidence 99986555443 334 999999999993 47999999999999999987655
Q ss_pred EE-EcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEe--CCCcEEE
Q 013827 237 LT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL--EDGTIKG 313 (436)
Q Consensus 237 ~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~dg~i~i 313 (436)
.. +.+|...|..++|++++ .++++|+.|+.+.|||.........+..|...|.+++|+|....+||+|+ .|+.|++
T Consensus 294 ~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~f 372 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKF 372 (484)
T ss_pred hhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence 44 88999999999999999 99999999999999999888888888999999999999999888999975 5999999
Q ss_pred EeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEE-EeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEc
Q 013827 314 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT-GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 392 (436)
Q Consensus 314 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 392 (436)
||..++ ..+..+. -...|+.+.|++....++.+ |..++.|.||+..+.+ .+..+.+|...|..++++
T Consensus 373 wn~~~g---------~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~--~~~~l~gH~~RVl~la~S 440 (484)
T KOG0305|consen 373 WNTNTG---------ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK--LVAELLGHTSRVLYLALS 440 (484)
T ss_pred EEcCCC---------cEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc--eeeeecCCcceeEEEEEC
Confidence 999987 3343333 46789999999987444444 3347889999999876 677788999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 393 EDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 393 ~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
|||.. +++|+.|.++++|++-....
T Consensus 441 Pdg~~-i~t~a~DETlrfw~~f~~~~ 465 (484)
T KOG0305|consen 441 PDGET-IVTGAADETLRFWNLFDERP 465 (484)
T ss_pred CCCCE-EEEecccCcEEeccccCCCC
Confidence 99995 99999999999999987633
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-32 Score=252.05 Aligned_cols=254 Identities=19% Similarity=0.339 Sum_probs=223.0
Q ss_pred CCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEE
Q 013827 137 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 216 (436)
Q Consensus 137 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 216 (436)
++|+|.-.+++++--.|.|++||..-+. +...+..|.++|..++|+|.+ .++
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM~t---------------------------li~rFdeHdGpVRgv~FH~~q-plF 66 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRMGT---------------------------LIDRFDEHDGPVRGVDFHPTQ-PLF 66 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhhhh---------------------------HHhhhhccCCccceeeecCCC-CeE
Confidence 4559999999999999999999986433 444477899999999999996 599
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCC
Q 013827 217 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 296 (436)
Q Consensus 217 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~ 296 (436)
+||+.|-.|+||+..+.+++.++.+|-+.|..+.|++.- ..++++|.|.+|++|+..+.+++....+|..-|.|.+|+|
T Consensus 67 VSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp 145 (1202)
T KOG0292|consen 67 VSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP 145 (1202)
T ss_pred EecCCccEEEEEecccceehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC
Confidence 999999999999999999999999999999999999998 7899999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCCCCC--------------------CCcccEEEeccCCCeEEEEecCCCCCEEEE
Q 013827 297 HAEHSFVVSLEDGTIKGFDIRTAKSDPDST--------------------SQQSSFTLHAHDKAVCTISYNPLVPNLLAT 356 (436)
Q Consensus 297 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~--------------------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 356 (436)
.. .++++++-|.+||+||+.........+ .....+.+.+|...|+-++|+|.- -++++
T Consensus 146 tE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVS 223 (1202)
T KOG0292|consen 146 TE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVS 223 (1202)
T ss_pred cc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEe
Confidence 65 689999999999999986543211111 112245678999999999999988 69999
Q ss_pred EeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 357 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 357 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
|+.|..|++|.+...+.-.+-+..+|...|.++-|+|... ++++.+.|++|+|||+...+.+++.
T Consensus 224 G~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 224 GADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred cCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEecccccceeee
Confidence 9999999999999877656667789999999999999888 6999999999999999998887654
No 52
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-32 Score=242.40 Aligned_cols=242 Identities=19% Similarity=0.332 Sum_probs=218.1
Q ss_pred CCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 139 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 139 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
++|...+++++-.+|.|.|||.++...+..+ .-..-+|.+..|-.- .+.+++
T Consensus 21 ~HPtePw~la~LynG~V~IWnyetqtmVksf---------------------------eV~~~PvRa~kfiaR-knWiv~ 72 (794)
T KOG0276|consen 21 FHPTEPWILAALYNGDVQIWNYETQTMVKSF---------------------------EVSEVPVRAAKFIAR-KNWIVT 72 (794)
T ss_pred cCCCCceEEEeeecCeeEEEecccceeeeee---------------------------eecccchhhheeeec-cceEEE
Confidence 3899999999999999999999987766653 345678999999887 479999
Q ss_pred EeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC-CccceEeeeCCeeEEEeCCC
Q 013827 219 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST-HSGFKWAVAADVESLAWDPH 297 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~i~~~~~~~~ 297 (436)
|+.|..|+||+..+++.+..|..|.+.|.+++.+|.. .+++++|.|-+|++||....- +.+.+.+|..-|.+++|+|.
T Consensus 73 GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPk 151 (794)
T KOG0276|consen 73 GSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPK 151 (794)
T ss_pred ecCCceEEEEecccceeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCC
Confidence 9999999999999999999999999999999999999 789999999999999998754 44556789999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC-CCEEEEEeCCCcEEEEECCCCCceeE
Q 013827 298 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV-PNLLATGSTDKMVKLWDLSNNQPSCI 376 (436)
Q Consensus 298 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~d~~i~iwd~~~~~~~~~ 376 (436)
+.+.+++++-|++|++|.+... .+..++.+|...|+++.|-+-+ .-+|++|+.|.+|+|||..+.. ++
T Consensus 152 D~ntFaS~sLDrTVKVWslgs~---------~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~--CV 220 (794)
T KOG0276|consen 152 DPNTFASASLDRTVKVWSLGSP---------HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS--CV 220 (794)
T ss_pred CccceeeeeccccEEEEEcCCC---------CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH--HH
Confidence 9999999999999999999987 7789999999999999999844 2399999999999999999887 78
Q ss_pred EeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 377 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 377 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
.++.+|...|..+.|+|.-+ ++++|+.||+++||+..+-+....
T Consensus 221 ~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE~t 264 (794)
T KOG0276|consen 221 QTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLEKT 264 (794)
T ss_pred HHhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehhhh
Confidence 89999999999999999999 799999999999999887765444
No 53
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-32 Score=251.61 Aligned_cols=267 Identities=19% Similarity=0.277 Sum_probs=200.4
Q ss_pred CCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcc--------------------eeeecccchh-----------h--hhhc
Q 013827 137 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQP--------------------HVILGGIDEE-----------K--KKKK 183 (436)
Q Consensus 137 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~--------------------~~~~~~~~~~-----------~--~~~~ 183 (436)
++||+||+|||+||.|+.|+||.+...+.... ...-...... . ....
T Consensus 273 mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~ 352 (712)
T KOG0283|consen 273 MKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPL 352 (712)
T ss_pred EEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCC
Confidence 34599999999999999999999865211100 0000000000 0 0000
Q ss_pred ccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEE
Q 013827 184 SKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS 263 (436)
Q Consensus 184 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 263 (436)
....-..++...+.||.+.|.+|.|+.+ ++|++++.|.+||+|++...+++..|. |.+.|+|++|+|.+.++|++|+
T Consensus 353 ~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGS 429 (712)
T KOG0283|consen 353 KAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGS 429 (712)
T ss_pred ccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecc
Confidence 1111134566778899999999999998 499999999999999999999999998 9999999999998879999999
Q ss_pred CCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEecc------
Q 013827 264 FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH------ 337 (436)
Q Consensus 264 ~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~------ 337 (436)
-|+.|+||++...+... -.....-|++++|.|+| +..++|+.+|.+++|+....+... ...+..|
T Consensus 430 LD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~-------~~~I~~~~~Kk~~ 500 (712)
T KOG0283|consen 430 LDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVS-------DFHIRLHNKKKKQ 500 (712)
T ss_pred cccceEEeecCcCeeEe-ehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEE-------eeeEeeccCcccc
Confidence 99999999998766543 23445789999999997 689999999999999998763211 1111111
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 338 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 338 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
...|+.+.|.|..+..+++.+.|..|+|||.++..+...+.-......-....|+.||++ +++++.|..|+||+....
T Consensus 501 ~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~-IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 501 GKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKH-IVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCE-EEEeecCceEEEEeCCCC
Confidence 237999999997777788889999999999988775443332222334567789999997 888999999999998543
No 54
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.7e-31 Score=240.97 Aligned_cols=289 Identities=18% Similarity=0.281 Sum_probs=242.8
Q ss_pred CCCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEE
Q 013827 68 KDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA 147 (436)
Q Consensus 68 ~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 147 (436)
...+|..+|.+++||.+...+++|+.+ .+.+|+....++.... ...+.+|..+ -|.+++++
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga~~------SikiWn~~t~kciRTi------~~~y~l~~~F-------vpgd~~Iv 428 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGAGE------SIKIWNRDTLKCIRTI------TCGYILASKF-------VPGDRYIV 428 (888)
T ss_pred eeccchhheeEEEeecCceeeeecCCC------cEEEEEccCcceeEEe------ccccEEEEEe-------cCCCceEE
Confidence 456899999999999999999998765 5556665543211111 1124455555 58899999
Q ss_pred EeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEE
Q 013827 148 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 227 (436)
Q Consensus 148 ~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~v 227 (436)
+|...|.+.|+|+.+...++. ..+|.+.|+.++.+|++ ..+++|+.|.+|++
T Consensus 429 ~G~k~Gel~vfdlaS~~l~Et---------------------------i~AHdgaIWsi~~~pD~-~g~vT~saDktVkf 480 (888)
T KOG0306|consen 429 LGTKNGELQVFDLASASLVET---------------------------IRAHDGAIWSISLSPDN-KGFVTGSADKTVKF 480 (888)
T ss_pred EeccCCceEEEEeehhhhhhh---------------------------hhccccceeeeeecCCC-CceEEecCCcEEEE
Confidence 999999999999988766654 44799999999999996 58999999999999
Q ss_pred EeCCC-----Ce--EE------EEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEe
Q 013827 228 WDVAA-----GK--CN------LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW 294 (436)
Q Consensus 228 wd~~~-----~~--~~------~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~ 294 (436)
||..- +. .+ ++++ ....|.|+++||++ .+|+++--|+++++|-+.+.+....+++|.-+|.++..
T Consensus 481 Wdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDI 558 (888)
T KOG0306|consen 481 WDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDI 558 (888)
T ss_pred EeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCC-cEEEEEeccCeEEEEEecceeeeeeecccccceeEEec
Confidence 99741 11 11 1222 46789999999999 99999999999999999999988889999999999999
Q ss_pred CCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCce
Q 013827 295 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS 374 (436)
Q Consensus 295 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~ 374 (436)
+|++ +++++|+.|.+|++|-+.-+ .+-..+.+|+..|.++.|.|.. .++.+++.|+.|+-||-...+
T Consensus 559 S~DS-klivTgSADKnVKiWGLdFG---------DCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe-- 625 (888)
T KOG0306|consen 559 SPDS-KLIVTGSADKNVKIWGLDFG---------DCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFE-- 625 (888)
T ss_pred cCCc-CeEEeccCCCceEEeccccc---------hhhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechhhhh--
Confidence 9987 79999999999999999887 6788899999999999999987 899999999999999988776
Q ss_pred eEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccc
Q 013827 375 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 419 (436)
Q Consensus 375 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (436)
.+..+.+|...|++++.+|+|.+ +++++.|.+|++|.......+
T Consensus 626 ~iq~L~~H~~ev~cLav~~~G~~-vvs~shD~sIRlwE~tde~~~ 669 (888)
T KOG0306|consen 626 EIQKLDGHHSEVWCLAVSPNGSF-VVSSSHDKSIRLWERTDEILI 669 (888)
T ss_pred hheeeccchheeeeeEEcCCCCe-EEeccCCceeEeeeccCccee
Confidence 67788999999999999999995 899999999999997664433
No 55
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-30 Score=225.91 Aligned_cols=308 Identities=16% Similarity=0.234 Sum_probs=246.8
Q ss_pred CCcccCCCCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCC
Q 013827 62 DPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE 141 (436)
Q Consensus 62 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 141 (436)
+|.....-.+|.-.++-..|||.|-++|+|...+ +|.+|+.... ..++...-..+....-.++| +.
T Consensus 48 ~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG-----~vRIWdtt~~--~hiLKnef~v~aG~I~Di~W-------d~ 113 (603)
T KOG0318|consen 48 NPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSG-----KVRIWDTTQK--EHILKNEFQVLAGPIKDISW-------DF 113 (603)
T ss_pred CccceeeeccccceeEEEEeCCCceEEeecCCcC-----cEEEEeccCc--ceeeeeeeeeccccccccee-------CC
Confidence 3333333457888999999999999999998776 7777776653 13444444445555556777 89
Q ss_pred CCcEEEEeeCC----CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEE
Q 013827 142 KGNFMAVGSME----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 217 (436)
Q Consensus 142 ~~~~l~~g~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 217 (436)
|++++++.++- |.+.+||.- ..+.. +.||...|++++|-|.-+..++
T Consensus 114 ds~RI~avGEGrerfg~~F~~DSG--~SvGe---------------------------i~GhSr~ins~~~KpsRPfRi~ 164 (603)
T KOG0318|consen 114 DSKRIAAVGEGRERFGHVFLWDSG--NSVGE---------------------------ITGHSRRINSVDFKPSRPFRIA 164 (603)
T ss_pred CCcEEEEEecCccceeEEEEecCC--Cccce---------------------------eeccceeEeeeeccCCCceEEE
Confidence 99999887643 456666643 33222 5589999999999999778899
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE---eeeCCeeEEEe
Q 013827 218 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW---AVAADVESLAW 294 (436)
Q Consensus 218 s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~~i~~~~~ 294 (436)
+|+.|++|.+|+=.--+...++..|...|+++.|+||| .++++++.||++.+||-.+++....+. .|++.|.+++|
T Consensus 165 T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsW 243 (603)
T KOG0318|consen 165 TGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSW 243 (603)
T ss_pred eccCCCeEEEeeCCCeeeeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEE
Confidence 99999999999876667777888999999999999999 899999999999999999998877665 79999999999
Q ss_pred CCCCCcEEEEEeCCCcEEEEeCCCCCCCCC----------------------------------CCCCcccEEEeccCCC
Q 013827 295 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPD----------------------------------STSQQSSFTLHAHDKA 340 (436)
Q Consensus 295 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~ 340 (436)
+||+ ..+++++.|.+++|||+.+.+.... .....+...+.+|...
T Consensus 244 sPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ 322 (603)
T KOG0318|consen 244 SPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKS 322 (603)
T ss_pred CCCC-ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccc
Confidence 9988 6899999999999999987754110 1122366778899999
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 341 VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 341 v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
|+++..+|++ .+|++|+.||.|.-|+..++..- ...-..|...|.+++-+..+. +.+.+.|.++++.++..+..
T Consensus 323 ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~-~~~g~~h~nqI~~~~~~~~~~--~~t~g~Dd~l~~~~~~~~~~ 396 (603)
T KOG0318|consen 323 ITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSD-RLAGKGHTNQIKGMAASESGE--LFTIGWDDTLRVISLKDNGY 396 (603)
T ss_pred eeEEEEcCCC-CEEEeeccCceEEEEecCCcccc-ccccccccceEEEEeecCCCc--EEEEecCCeEEEEecccCcc
Confidence 9999999999 99999999999999999988632 223367888999999998776 67899999999998865543
No 56
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-31 Score=208.43 Aligned_cols=280 Identities=18% Similarity=0.209 Sum_probs=228.4
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
..+++.|..+.|+-||++.++++.+. .|.+|+...+.....|..|...+-.. +.+.|...|++|
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdr-----tvrLWNp~rg~liktYsghG~EVlD~-----------~~s~Dnskf~s~ 77 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDR-----TVRLWNPLRGALIKTYSGHGHEVLDA-----------ALSSDNSKFASC 77 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCc-----eEEeecccccceeeeecCCCceeeec-----------cccccccccccC
Confidence 45788999999999999999999887 88999988876666677776554322 126688899999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+.|..|.+||+++++..+. +.+|...|+.++|+.+. ..+++|+.|.++++||
T Consensus 78 GgDk~v~vwDV~TGkv~Rr---------------------------~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wD 129 (307)
T KOG0316|consen 78 GGDKAVQVWDVNTGKVDRR---------------------------FRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWD 129 (307)
T ss_pred CCCceEEEEEcccCeeeee---------------------------cccccceeeEEEecCcc-eEEEeccccceeEEEE
Confidence 9999999999998776654 67999999999999984 6999999999999999
Q ss_pred CCCC--eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeC
Q 013827 230 VAAG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE 307 (436)
Q Consensus 230 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 307 (436)
.++. ++++.+....+.|.++..+. ..+++|+.||+++.||++.+.... .-...+|+++.|++++ +..++++-
T Consensus 130 CRS~s~ePiQildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~s--Dy~g~pit~vs~s~d~-nc~La~~l 203 (307)
T KOG0316|consen 130 CRSRSFEPIQILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSS--DYFGHPITSVSFSKDG-NCSLASSL 203 (307)
T ss_pred cccCCCCccchhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeeh--hhcCCcceeEEecCCC-CEEEEeec
Confidence 9764 67888888889999999875 569999999999999999887654 2346789999999988 78999999
Q ss_pred CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeE--EEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCc
Q 013827 308 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC--TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA 385 (436)
Q Consensus 308 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 385 (436)
|+++++.|-.++ +.+..+++|...-. ..+++... ..+++|++||.|++||+.... .+..+..+...
T Consensus 204 ~stlrLlDk~tG---------klL~sYkGhkn~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd~~--~~sk~~~~~~v 271 (307)
T KOG0316|consen 204 DSTLRLLDKETG---------KLLKSYKGHKNMEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVDET--QISKLSVVSTV 271 (307)
T ss_pred cceeeecccchh---------HHHHHhcccccceeeeeeeecccc-eeEEeccCCceEEEEEeccce--eeeeeccCCce
Confidence 999999999988 77888888876543 34555554 789999999999999999877 45556666666
Q ss_pred -EEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 013827 386 -VFSVAFSEDSPFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 386 -v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 413 (436)
+..+.++|.-.- |+++. ++.+.+|--
T Consensus 272 ~v~dl~~hp~~~~-f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 272 IVTDLSCHPTMDD-FITAT-GHGDLFWYQ 298 (307)
T ss_pred eEEeeecccCccc-eeEec-CCceeceee
Confidence 899999998764 44444 344566643
No 57
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.6e-30 Score=200.75 Aligned_cols=299 Identities=19% Similarity=0.276 Sum_probs=229.1
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCC--------C-CCceeeecccccCcCcceeecccCCCCCC
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG--------G-DPNLYVHHHIIIPAFPLCMAWLDCPLKDR 140 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 140 (436)
.+....|.+++|+|.|.+.++|+... .++|..|..-.+ . .+............-..|.+| |
T Consensus 29 l~dsqairav~fhp~g~lyavgsnsk---t~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~w-------s 98 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSK---TFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAW-------S 98 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCc---eEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEe-------c
Confidence 45678899999999999999998764 357776643221 0 111111111111223468888 8
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCC---CCcEEE
Q 013827 141 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---FRNILA 217 (436)
Q Consensus 141 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~l~ 217 (436)
|+|++||+|+.|.+|++...+...+... .....+.-|.+.|..++|..+ +..+|+
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~----------------------g~dle~nmhdgtirdl~fld~~~s~~~il~ 156 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNAT----------------------GHDLEFNMHDGTIRDLAFLDDPESGGAILA 156 (350)
T ss_pred CccCeEEecCCCceEEEEeccccccccc----------------------CcceeeeecCCceeeeEEecCCCcCceEEE
Confidence 9999999999999999987654332211 111224569999999999654 334777
Q ss_pred EEeC-CCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEe-------eeCCe
Q 013827 218 SASA-DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-------VAADV 289 (436)
Q Consensus 218 s~~~-dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-------~~~~i 289 (436)
+++. |..|.+-|...++..+.+.+|++.|.++ ++-++ .++++|+.|.+|++||++.......... ..+.|
T Consensus 157 s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessav 234 (350)
T KOG0641|consen 157 SAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAV 234 (350)
T ss_pred ecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecC-cEEEccCCCceEEEEeeeccceeeeccCcccCCCccccee
Confidence 7654 6678888989999999999999999876 33345 7899999999999999998776543321 23568
Q ss_pred eEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 013827 290 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 369 (436)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~ 369 (436)
.+++..|.| .++++|..|....+||++.+ ..++.+..|...|.++.|+|.. .++++++.|..|++-|+.
T Consensus 235 aav~vdpsg-rll~sg~~dssc~lydirg~---------r~iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 235 AAVAVDPSG-RLLASGHADSSCMLYDIRGG---------RMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred EEEEECCCc-ceeeeccCCCceEEEEeeCC---------ceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeecc
Confidence 999999987 79999999999999999988 7799999999999999999987 999999999999999997
Q ss_pred CC--CceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 370 NN--QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 370 ~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
.. ....+.....|...+..+.|+|..- -+++.+.|.++.+|-+.
T Consensus 304 gdla~el~~~vv~ehkdk~i~~rwh~~d~-sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 304 GDLAHELPIMVVAEHKDKAIQCRWHPQDF-SFISSSADKTATLWALN 349 (350)
T ss_pred cchhhcCceEEEEeccCceEEEEecCccc-eeeeccCcceEEEeccC
Confidence 53 1234455667888899999999886 48889999999999764
No 58
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.8e-32 Score=215.29 Aligned_cols=289 Identities=18% Similarity=0.291 Sum_probs=233.0
Q ss_pred CCCCccccccceec---cCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcE
Q 013827 69 DDEDSEDLEDMTIN---PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF 145 (436)
Q Consensus 69 ~~~~~~~v~~~~~s---p~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 145 (436)
..+|..+|.+++|| |+|-+|.+++.++ .-.+-+..++.....+..|...+-.. |+ +.+..+
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~-----~pmlr~g~tgdwigtfeghkgavw~~--~l---------~~na~~ 73 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDG-----KPMLRNGDTGDWIGTFEGHKGAVWSA--TL---------NKNATR 73 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCC-----CchhccCCCCCcEEeeeccCcceeee--ec---------Cchhhh
Confidence 35889999999999 5888999998876 33333334443444555555433221 11 567777
Q ss_pred EEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcE
Q 013827 146 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV 225 (436)
Q Consensus 146 l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 225 (436)
-|+++.|-+-+|||.-++..+... .|..-|.+++|+.| .++|++|+.+..+
T Consensus 74 aasaaadftakvw~a~tgdelhsf----------------------------~hkhivk~~af~~d-s~~lltgg~ekll 124 (334)
T KOG0278|consen 74 AASAAADFTAKVWDAVTGDELHSF----------------------------EHKHIVKAVAFSQD-SNYLLTGGQEKLL 124 (334)
T ss_pred hhhhcccchhhhhhhhhhhhhhhh----------------------------hhhheeeeEEeccc-chhhhccchHHHh
Confidence 889999999999999888777643 58899999999999 4799999999999
Q ss_pred EEEeCCCCe-EEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEE
Q 013827 226 KIWDVAAGK-CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV 304 (436)
Q Consensus 226 ~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 304 (436)
||+|++..+ +...+.+|.+.|..+.|.... +.|++++.|++|++||.+++.... ....+.+++++..+++|. +++
T Consensus 125 rvfdln~p~App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~-sL~~~s~VtSlEvs~dG~--ilT 200 (334)
T KOG0278|consen 125 RVFDLNRPKAPPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQ-SLEFNSPVTSLEVSQDGR--ILT 200 (334)
T ss_pred hhhhccCCCCCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEE-EEecCCCCcceeeccCCC--EEE
Confidence 999998653 567888999999999999888 788888999999999999998776 566788999999999873 666
Q ss_pred EeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCC
Q 013827 305 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG 384 (436)
Q Consensus 305 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 384 (436)
-...+.|.+||..+. ..+..+. -...|.+...+|+. ..+++|++|..++.||..+++....+ ..+|.+
T Consensus 201 ia~gssV~Fwdaksf---------~~lKs~k-~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~g 268 (334)
T KOG0278|consen 201 IAYGSSVKFWDAKSF---------GLLKSYK-MPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFG 268 (334)
T ss_pred EecCceeEEeccccc---------cceeecc-CccccccccccCCC-ceEEecCcceEEEEEeccCCceeeec-ccCCCC
Confidence 667789999999876 3343333 34568899999998 89999999999999999999843332 478999
Q ss_pred cEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccc
Q 013827 385 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 419 (436)
Q Consensus 385 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (436)
+|.|+.|+|+|. +.++|+.||+|+||.+..++.-
T Consensus 269 pVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 269 PVHCVRFSPDGE-LYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ceEEEEECCCCc-eeeccCCCceEEEEEecCCCch
Confidence 999999999999 7999999999999999776654
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=5.4e-31 Score=221.15 Aligned_cols=289 Identities=22% Similarity=0.380 Sum_probs=222.5
Q ss_pred cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCC---ceEEEEEecCCcceeEEEEEec
Q 013827 31 NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPND---AVIVCARNEDDVSHLEVYILEE 107 (436)
Q Consensus 31 ~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~~~~~~~~~~~~~v~~~~~ 107 (436)
+=||++|||+......+. -.+|.+.|.+++|.-.. ..+++++.+. .+.+|.|+.
T Consensus 122 sYDg~~riWd~~Gk~~~~--------------------~~Ght~~ik~v~~v~~n~~~~~fvsas~Dq---tl~Lw~~~~ 178 (423)
T KOG0313|consen 122 SYDGTSRIWDLKGKSIKT--------------------IVGHTGPIKSVAWVIKNSSSCLFVSASMDQ---TLRLWKWNV 178 (423)
T ss_pred ecCCeeEEEecCCceEEE--------------------EecCCcceeeeEEEecCCccceEEEecCCc---eEEEEEecC
Confidence 568999999887665531 13678888887776433 3588887774 357777766
Q ss_pred CCCCCCceee--ecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhccc
Q 013827 108 SDGGDPNLYV--HHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSK 185 (436)
Q Consensus 108 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (436)
.......+.. +|...+. |+.- .++|.++++|+.|.+|.||+........ ..-. .....++....+
T Consensus 179 ~~~~~~~~~~~~GHk~~V~----sVsv-------~~sgtr~~SgS~D~~lkiWs~~~~~~~~-~E~~-s~~rrk~~~~~~ 245 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVD----SVSV-------DSSGTRFCSGSWDTMLKIWSVETDEEDE-LESS-SNRRRKKQKREK 245 (423)
T ss_pred chhhhhHHhHhccccccee----EEEe-------cCCCCeEEeecccceeeecccCCCcccc-cccc-chhhhhhhhhhh
Confidence 6542222222 4544432 3332 6899999999999999999933221111 0000 011223333445
Q ss_pred CCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECC
Q 013827 186 KGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD 265 (436)
Q Consensus 186 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 265 (436)
....+.+...+.||.++|.++.|++. ..+++++.|.+|+.||+.++..+..+.. ...++++.++|.. .+|++|+.|
T Consensus 246 ~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~-~Ll~~gssd 321 (423)
T KOG0313|consen 246 EGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLS-KLLASGSSD 321 (423)
T ss_pred cccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccceeeeec-CcceeEeeccccc-ceeeecCCC
Confidence 55667888899999999999999995 4899999999999999999998888874 5689999999988 999999999
Q ss_pred CcEEEEecCCCCCc---cceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeE
Q 013827 266 RSVVMKDARISTHS---GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 342 (436)
Q Consensus 266 ~~i~~wd~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 342 (436)
..+++||.|++... ..+.+|...|.++.|+|..++.|++++.|+++++||+|+. ..+++.+.+|...|.
T Consensus 322 r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~--------k~plydI~~h~DKvl 393 (423)
T KOG0313|consen 322 RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST--------KAPLYDIAGHNDKVL 393 (423)
T ss_pred CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC--------CCcceeeccCCceEE
Confidence 99999999987543 3456789999999999999999999999999999999997 358999999999999
Q ss_pred EEEecCCCCCEEEEEeCCCcEEEEECC
Q 013827 343 TISYNPLVPNLLATGSTDKMVKLWDLS 369 (436)
Q Consensus 343 ~~~~~p~~~~~l~~~~~d~~i~iwd~~ 369 (436)
++.|+. +.++++|+.|++|+++.-.
T Consensus 394 ~vdW~~--~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 394 SVDWNE--GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEeccC--CceEEeccCcceEEEeccc
Confidence 999997 3699999999999998654
No 60
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=6.1e-30 Score=238.45 Aligned_cols=255 Identities=18% Similarity=0.208 Sum_probs=193.1
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
++++..+++++.+.....|+...+..+.+.. ..++.......+.+|.+.|++++|+|.+..+|++|
T Consensus 29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~--------------~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSg 94 (493)
T PTZ00421 29 LWDCSNTIACNDRFIAVPWQQLGSTAVLKHT--------------DYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTA 94 (493)
T ss_pred cCCCCCcEeECCceEEEEEecCCceEEeecc--------------ccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEE
Confidence 5576667777777777888765443221110 01111111233678999999999999334699999
Q ss_pred eCCCcEEEEeCCCC-------eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEE
Q 013827 220 SADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 292 (436)
Q Consensus 220 ~~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~ 292 (436)
+.|++|++||+.++ +.+..+.+|...|.+++|+|++..+|++++.|++|++||+++.........|...|.++
T Consensus 95 S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sl 174 (493)
T PTZ00421 95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSL 174 (493)
T ss_pred eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence 99999999999765 34677889999999999999875799999999999999999887766566788899999
Q ss_pred EeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCC-eEEEEecCCCCCEEEEEe----CCCcEEEEE
Q 013827 293 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA-VCTISYNPLVPNLLATGS----TDKMVKLWD 367 (436)
Q Consensus 293 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~~~~----~d~~i~iwd 367 (436)
+|+|++ .++++++.|+.|++||++++ ..+..+.+|.+. +..+.|.+++ ..+++++ .|+.|++||
T Consensus 175 a~spdG-~lLatgs~Dg~IrIwD~rsg---------~~v~tl~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWD 243 (493)
T PTZ00421 175 EWNLDG-SLLCTTSKDKKLNIIDPRDG---------TIVSSVEAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWD 243 (493)
T ss_pred EEECCC-CEEEEecCCCEEEEEECCCC---------cEEEEEecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEe
Confidence 999987 68999999999999999987 556777888765 4567899987 5555543 478999999
Q ss_pred CCCCCceeEEeeC-CCCCcEEEEEEcCCCCcEEEEEe-CCCcEEEEeCCCCccccc
Q 013827 368 LSNNQPSCIASRN-PKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 368 ~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~ 421 (436)
++.... ...... .....+....|++++.. |++++ .|+.|++||+.+++.+..
T Consensus 244 lr~~~~-p~~~~~~d~~~~~~~~~~d~d~~~-L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 244 TRKMAS-PYSTVDLDQSSALFIPFFDEDTNL-LYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred CCCCCC-ceeEeccCCCCceEEEEEcCCCCE-EEEEEeCCCeEEEEEeeCCceEEE
Confidence 987543 222222 23345667789999985 66565 699999999999886654
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=9.8e-30 Score=255.74 Aligned_cols=254 Identities=20% Similarity=0.318 Sum_probs=203.7
Q ss_pred cceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEE
Q 013827 127 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 206 (436)
Q Consensus 127 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 206 (436)
+.+++| +|++++||+|+.|+.|+||+......... ........+ .+...|.++
T Consensus 486 V~~i~f-------s~dg~~latgg~D~~I~iwd~~~~~~~~~-------------------~~~~~~~~~-~~~~~v~~l 538 (793)
T PLN00181 486 VCAIGF-------DRDGEFFATAGVNKKIKIFECESIIKDGR-------------------DIHYPVVEL-ASRSKLSGI 538 (793)
T ss_pred EEEEEE-------CCCCCEEEEEeCCCEEEEEECCccccccc-------------------ccccceEEe-cccCceeeE
Confidence 455666 89999999999999999999864211000 000011112 234679999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeee
Q 013827 207 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA 286 (436)
Q Consensus 207 ~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 286 (436)
+|+|....+|++++.||+|++||+.+++.+..+.+|...|++++|+|..+.+|++|+.|+.|++||+++....... ...
T Consensus 539 ~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~-~~~ 617 (793)
T PLN00181 539 CWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI-KTK 617 (793)
T ss_pred EeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE-ecC
Confidence 9998655799999999999999999999999999999999999999744389999999999999999987665533 345
Q ss_pred CCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEE
Q 013827 287 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 366 (436)
Q Consensus 287 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iw 366 (436)
..+.++.|.+..+..+++|+.||.|++||++... .+...+.+|...|.++.|. ++ .+|++++.|++|++|
T Consensus 618 ~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~--------~~~~~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiW 687 (793)
T PLN00181 618 ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK--------LPLCTMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLW 687 (793)
T ss_pred CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC--------ccceEecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEE
Confidence 6789999976555899999999999999998752 3466778999999999997 44 789999999999999
Q ss_pred ECCCCC----ceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccc
Q 013827 367 DLSNNQ----PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 419 (436)
Q Consensus 367 d~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (436)
|++... ...+..+.+|...+..++|+|++. +|++|+.|+.|++|+......+
T Consensus 688 d~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~~~ 743 (793)
T PLN00181 688 DLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFPMPV 743 (793)
T ss_pred eCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCCCce
Confidence 997531 124667888999999999999998 5999999999999998765433
No 62
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.98 E-value=1.1e-30 Score=209.42 Aligned_cols=237 Identities=22% Similarity=0.286 Sum_probs=199.5
Q ss_pred CCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEE
Q 013827 138 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 217 (436)
Q Consensus 138 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 217 (436)
+++.+|.+|.+++.|.++.||--..++.+.. +.||++.|+|++...+. .+++
T Consensus 17 KyN~eGDLlFscaKD~~~~vw~s~nGerlGt---------------------------y~GHtGavW~~Did~~s-~~li 68 (327)
T KOG0643|consen 17 KYNREGDLLFSCAKDSTPTVWYSLNGERLGT---------------------------YDGHTGAVWCCDIDWDS-KHLI 68 (327)
T ss_pred EecCCCcEEEEecCCCCceEEEecCCceeee---------------------------ecCCCceEEEEEecCCc-ceee
Confidence 4489999999999999999998866665544 66999999999999984 6999
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEEC-----CCcEEEEecCCC-------CCccceEee
Q 013827 218 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-----DRSVVMKDARIS-------THSGFKWAV 285 (436)
Q Consensus 218 s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----d~~i~~wd~~~~-------~~~~~~~~~ 285 (436)
+|+.|.++++||+++|+++..++ ...+|..+.|+++| ++++.+.. .+.|.++|++.. .+......+
T Consensus 69 TGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~ 146 (327)
T KOG0643|consen 69 TGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP 146 (327)
T ss_pred eccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC
Confidence 99999999999999999999997 57899999999999 66665543 467999999843 333444556
Q ss_pred eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 013827 286 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL 365 (436)
Q Consensus 286 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~i 365 (436)
...++.+-|.|-+ ..+++|.+||.|.+||++++. +.+.....|...|+.++++|+. .++++++.|.+-++
T Consensus 147 ~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~--------~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl 216 (327)
T KOG0643|consen 147 DSKITSALWGPLG-ETIIAGHEDGSISIYDARTGK--------ELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKL 216 (327)
T ss_pred ccceeeeeecccC-CEEEEecCCCcEEEEEcccCc--------eeeechhhhccccccccccCCc-ceEEecccCcccee
Confidence 7889999999987 689999999999999999973 5566667899999999999999 99999999999999
Q ss_pred EECCCCCce-----------------------------------------------------eEEeeCCCCCcEEEEEEc
Q 013827 366 WDLSNNQPS-----------------------------------------------------CIASRNPKAGAVFSVAFS 392 (436)
Q Consensus 366 wd~~~~~~~-----------------------------------------------------~~~~~~~~~~~v~~~~~~ 392 (436)
||+.+.+.+ .+....+|-++|++++|+
T Consensus 217 ~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh 296 (327)
T KOG0643|consen 217 VDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH 296 (327)
T ss_pred eeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC
Confidence 998763211 122356788999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCC
Q 013827 393 EDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 393 ~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
|+|. .+++|+.||.|++..+..
T Consensus 297 PdGk-sYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 297 PDGK-SYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CCCc-ccccCCCCceEEEEEecc
Confidence 9999 599999999999987654
No 63
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=6.6e-29 Score=231.54 Aligned_cols=249 Identities=20% Similarity=0.230 Sum_probs=186.2
Q ss_pred cceeecccCCCCCCC-CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeE
Q 013827 127 PLCMAWLDCPLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG 205 (436)
Q Consensus 127 ~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 205 (436)
+.+++| +| ++++||+|+.|++|++||+.+..... ........+.+|...|.+
T Consensus 78 V~~v~f-------sP~d~~~LaSgS~DgtIkIWdi~~~~~~~--------------------~~~~~l~~L~gH~~~V~~ 130 (493)
T PTZ00421 78 IIDVAF-------NPFDPQKLFTASEDGTIMGWGIPEEGLTQ--------------------NISDPIVHLQGHTKKVGI 130 (493)
T ss_pred EEEEEE-------cCCCCCEEEEEeCCCEEEEEecCCCcccc--------------------ccCcceEEecCCCCcEEE
Confidence 456777 77 88999999999999999997543211 011233456789999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEee
Q 013827 206 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV 285 (436)
Q Consensus 206 ~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 285 (436)
++|+|++.++|++|+.|++|+|||+++++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||++++........|
T Consensus 131 l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~tl~~H 209 (493)
T PTZ00421 131 VSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSSVEAH 209 (493)
T ss_pred EEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence 99999866799999999999999999999999999999999999999999 89999999999999999988766555556
Q ss_pred eCC-eeEEEeCCCCCcEEEEE---eCCCcEEEEeCCCCCCCCCCCCCcccEEEecc-CCCeEEEEecCCCCCEEEEEe-C
Q 013827 286 AAD-VESLAWDPHAEHSFVVS---LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGS-T 359 (436)
Q Consensus 286 ~~~-i~~~~~~~~~~~~~~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~-~ 359 (436)
.+. ...+.|.+++..++.+| +.|+.|++||+++.. .+......+ ...+....|++++ .+|++++ .
T Consensus 210 ~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~--------~p~~~~~~d~~~~~~~~~~d~d~-~~L~lggkg 280 (493)
T PTZ00421 210 ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA--------SPYSTVDLDQSSALFIPFFDEDT-NLLYIGSKG 280 (493)
T ss_pred CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC--------CceeEeccCCCCceEEEEEcCCC-CEEEEEEeC
Confidence 543 45678888775444444 247999999998762 233333322 3456667889988 7777776 5
Q ss_pred CCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 360 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 360 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
|+.|++||+.+++......+ .+..++..++|.|... +- ...--..++|.+...
T Consensus 281 Dg~Iriwdl~~~~~~~~~~~-~s~~~~~g~~~~pk~~--~d-v~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 281 EGNIRCFELMNERLTFCSSY-SSVEPHKGLCMMPKWS--LD-TRKCEIARFYALTYH 333 (493)
T ss_pred CCeEEEEEeeCCceEEEeec-cCCCCCcceEeccccc--cc-ccceeeeEEEEecCC
Confidence 99999999998875333222 2455788999999643 11 122234567776554
No 64
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=5.4e-31 Score=223.36 Aligned_cols=289 Identities=17% Similarity=0.219 Sum_probs=226.5
Q ss_pred hhHHHHHHHhhcccceeeec-----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCC
Q 013827 11 SRLEEILRLYHSCFRCHKIS-----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPND 85 (436)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~-----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 85 (436)
+-|+++..++--+.+++.+. ++|.|+.||.+..-.=| . +.....+|...|..+.||||+
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~--------------k--l~~tlvgh~~~V~yi~wSPDd 281 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHF--------------K--LKKTLVGHSQPVSYIMWSPDD 281 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcce--------------e--eeeeeecccCceEEEEECCCC
Confidence 45666777777777777776 99999999966321111 0 111234789999999999999
Q ss_pred ceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCC
Q 013827 86 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDE 165 (436)
Q Consensus 86 ~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~ 165 (436)
++|++++.+. .++.|+...+....++.+. ...-+.|.+| -|||..+++|+.|++|..||++....
T Consensus 282 ryLlaCg~~e-----~~~lwDv~tgd~~~~y~~~---~~~S~~sc~W-------~pDg~~~V~Gs~dr~i~~wdlDgn~~ 346 (519)
T KOG0293|consen 282 RYLLACGFDE-----VLSLWDVDTGDLRHLYPSG---LGFSVSSCAW-------CPDGFRFVTGSPDRTIIMWDLDGNIL 346 (519)
T ss_pred CeEEecCchH-----heeeccCCcchhhhhcccC---cCCCcceeEE-------ccCCceeEecCCCCcEEEecCCcchh
Confidence 9999998887 5788888777555444433 2233457778 69999999999999999999974321
Q ss_pred CcceeeecccchhhhhhcccCCCcccccccccC-cccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCC
Q 013827 166 VQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS-HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTD 244 (436)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 244 (436)
.. ..+ ....|.+++..+||. ++++.+.|..|++++.++......+. ...
T Consensus 347 ~~----------------------------W~gvr~~~v~dlait~Dgk-~vl~v~~d~~i~l~~~e~~~dr~lis-e~~ 396 (519)
T KOG0293|consen 347 GN----------------------------WEGVRDPKVHDLAITYDGK-YVLLVTVDKKIRLYNREARVDRGLIS-EEQ 396 (519)
T ss_pred hc----------------------------ccccccceeEEEEEcCCCc-EEEEEecccceeeechhhhhhhcccc-ccC
Confidence 11 111 235699999999985 77778899999999998776554454 456
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCC--eeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 013827 245 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD--VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD 322 (436)
Q Consensus 245 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~ 322 (436)
+|+++..+.++ .++++.-.+..+++||+.....+....+|... +..-+|--....++++|++|+.|+||+..++
T Consensus 397 ~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg--- 472 (519)
T KOG0293|consen 397 PITSFSISKDG-KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG--- 472 (519)
T ss_pred ceeEEEEcCCC-cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC---
Confidence 89999999999 89999999999999999988777777777654 4444565545579999999999999999988
Q ss_pred CCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 013827 323 PDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~ 370 (436)
.++..+.+|...|++++|+|..+.++|+++.||+|+||....
T Consensus 473 ------kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 473 ------KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ------ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 789999999999999999999999999999999999997754
No 65
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=4e-29 Score=222.45 Aligned_cols=247 Identities=32% Similarity=0.503 Sum_probs=209.0
Q ss_pred cceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEE
Q 013827 127 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 206 (436)
Q Consensus 127 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 206 (436)
..|+.| +|++++|++++.||.|++|++.+.+.. ..+..|...+..+
T Consensus 12 i~~~~~-------~~~~~~l~~~~~~g~i~i~~~~~~~~~---------------------------~~~~~~~~~i~~~ 57 (289)
T cd00200 12 VTCVAF-------SPDGKLLATGSGDGTIKVWDLETGELL---------------------------RTLKGHTGPVRDV 57 (289)
T ss_pred EEEEEE-------cCCCCEEEEeecCcEEEEEEeeCCCcE---------------------------EEEecCCcceeEE
Confidence 356777 899999999999999999999764422 2244688899999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeee
Q 013827 207 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA 286 (436)
Q Consensus 207 ~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 286 (436)
.|+|++ .++++++.||.|++||+.+++....+..|...+.++.|++++ .++++++.++.+.+||+++.+.......+.
T Consensus 58 ~~~~~~-~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 135 (289)
T cd00200 58 AASADG-TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHT 135 (289)
T ss_pred EECCCC-CEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCC
Confidence 999996 589999999999999999888888888899999999999997 788888889999999999776665555677
Q ss_pred CCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEE
Q 013827 287 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 366 (436)
Q Consensus 287 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iw 366 (436)
..+.+++|+|++ .++++++.++.|++||++.. .....+..|...+.++.|+|++ ..+++++.++.|++|
T Consensus 136 ~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~ 204 (289)
T cd00200 136 DWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTG---------KCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLW 204 (289)
T ss_pred CcEEEEEEcCcC-CEEEEEcCCCcEEEEEcccc---------ccceeEecCccccceEEECCCc-CEEEEecCCCcEEEE
Confidence 889999999975 67777777999999999876 5566777888899999999998 788888889999999
Q ss_pred ECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccc
Q 013827 367 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 423 (436)
Q Consensus 367 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (436)
|++..+ ....+..|...+.+++|+|++. ++++++.||.|++||+.+++.+....
T Consensus 205 d~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~~~~~~~~ 258 (289)
T cd00200 205 DLSTGK--CLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGECVQTLS 258 (289)
T ss_pred ECCCCc--eecchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCceeEEEcc
Confidence 999876 3445557788999999999976 57777779999999999877665544
No 66
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=3.9e-30 Score=243.21 Aligned_cols=314 Identities=18% Similarity=0.258 Sum_probs=230.4
Q ss_pred CccccccceeccCCceEEEEE--ecCCcceeEEEEEecCC----CCCCc--eeeecccccCcCcceeecccCCCCCCCCC
Q 013827 72 DSEDLEDMTINPNDAVIVCAR--NEDDVSHLEVYILEESD----GGDPN--LYVHHHIIIPAFPLCMAWLDCPLKDREKG 143 (436)
Q Consensus 72 ~~~~v~~~~~sp~~~~l~~~~--~~~~~~~~~v~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 143 (436)
++..|.+++.+||+..+|+|+ .|+.+ .||.-+.-. ....+ ...........-+.|+.| +|||
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~---~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~-------S~dG 81 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGI---VIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRF-------SPDG 81 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccc---eeeccccccchhhhhhcccchhheeeccccCceeEEEE-------CCCC
Confidence 345699999999999999998 55533 244322111 10000 001111112233467877 9999
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCC
Q 013827 144 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK 223 (436)
Q Consensus 144 ~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 223 (436)
++||+|++|+.|.||+... ..... .++... ........+....+.+|...|..++|+|++ .+|++++.|+
T Consensus 82 ~~lAsGSDD~~v~iW~~~~-~~~~~--~fgs~g------~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~Dn 151 (942)
T KOG0973|consen 82 SYLASGSDDRLVMIWERAE-IGSGT--VFGSTG------GAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDN 151 (942)
T ss_pred CeEeeccCcceEEEeeecc-cCCcc--cccccc------cccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccc
Confidence 9999999999999999874 11111 111000 123335567778888999999999999996 6999999999
Q ss_pred cEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE------eeeCCeeEEEeCCC
Q 013827 224 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW------AVAADVESLAWDPH 297 (436)
Q Consensus 224 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~------~~~~~i~~~~~~~~ 297 (436)
+|.|||..+.+.+..+.+|.+.|..+.|.|-| ++|++-+.|++|++|++.+........ ....-+..+.|+||
T Consensus 152 sViiwn~~tF~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPD 230 (942)
T KOG0973|consen 152 SVIIWNAKTFELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPD 230 (942)
T ss_pred eEEEEccccceeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCC
Confidence 99999999999999999999999999999999 999999999999999976643332221 12345788999999
Q ss_pred CCcEEEEEe----CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCC--------C----CC----EEEEE
Q 013827 298 AEHSFVVSL----EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL--------V----PN----LLATG 357 (436)
Q Consensus 298 ~~~~~~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--------~----~~----~l~~~ 357 (436)
|. ++++.. .-..+.|.+-.+. ..-..+.+|.+++.+++|+|. | +. .+|+|
T Consensus 231 G~-~las~nA~n~~~~~~~IieR~tW---------k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Avg 300 (942)
T KOG0973|consen 231 GH-HLASPNAVNGGKSTIAIIERGTW---------KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVG 300 (942)
T ss_pred cC-eecchhhccCCcceeEEEecCCc---------eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEe
Confidence 95 566542 2335777776655 557788999999999999982 1 11 68899
Q ss_pred eCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 358 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 358 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
+.|++|.||.....++..+. .+-....|..++|+|||.. |..++.||+|.+..++..+.
T Consensus 301 SqDrSlSVW~T~~~RPl~vi-~~lf~~SI~DmsWspdG~~-LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 301 SQDRSLSVWNTALPRPLFVI-HNLFNKSIVDMSWSPDGFS-LFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred cCCccEEEEecCCCCchhhh-hhhhcCceeeeeEcCCCCe-EEEEecCCeEEEEEcchHHh
Confidence 99999999999877754332 2333558999999999985 66799999999999976543
No 67
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=4.8e-31 Score=228.11 Aligned_cols=252 Identities=18% Similarity=0.258 Sum_probs=207.5
Q ss_pred ceeecccCCCCCCC-CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEE
Q 013827 128 LCMAWLDCPLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 206 (436)
Q Consensus 128 ~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 206 (436)
.++.| .| .+.+|++|+.|+.|+||++.. .......+.+|..+|.++
T Consensus 218 sai~~-------fp~~~hLlLS~gmD~~vklW~vy~--------------------------~~~~lrtf~gH~k~Vrd~ 264 (503)
T KOG0282|consen 218 SAIQW-------FPKKGHLLLSGGMDGLVKLWNVYD--------------------------DRRCLRTFKGHRKPVRDA 264 (503)
T ss_pred chhhh-------ccceeeEEEecCCCceEEEEEEec--------------------------Ccceehhhhcchhhhhhh
Confidence 45666 34 799999999999999999874 133344477999999999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeee
Q 013827 207 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA 286 (436)
Q Consensus 207 ~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 286 (436)
+|+++| ..++|++.|+.|++||+++|+++..+. ....++|+.|+|++.+.+++|+.|+.|+.||+|+++.......|-
T Consensus 265 ~~s~~g-~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL 342 (503)
T KOG0282|consen 265 SFNNCG-TSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL 342 (503)
T ss_pred hccccC-CeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh
Confidence 999997 488899999999999999999999986 456889999999998999999999999999999999888788889
Q ss_pred CCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEE
Q 013827 287 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 366 (436)
Q Consensus 287 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iw 366 (436)
+.+..+.|-+.+ ..+++.++|++++||+.+..- ........+.....++..+|++ .++++-+.|+.|.+|
T Consensus 343 g~i~~i~F~~~g-~rFissSDdks~riWe~~~~v--------~ik~i~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~if 412 (503)
T KOG0282|consen 343 GAILDITFVDEG-RRFISSSDDKSVRIWENRIPV--------PIKNIADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIF 412 (503)
T ss_pred hheeeeEEccCC-ceEeeeccCccEEEEEcCCCc--------cchhhcchhhccCcceecCCCC-CeehhhccCceEEEE
Confidence 999999999987 689999999999999998872 1112223334456689999998 899999999999999
Q ss_pred ECCCCCc-eeEEeeCCCC--CcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccC
Q 013827 367 DLSNNQP-SCIASRNPKA--GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 425 (436)
Q Consensus 367 d~~~~~~-~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (436)
.+...-. .....+.+|. +.-..+.|||||++ |++|+.||.+.+||..+-+.+...-.+
T Consensus 413 s~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~-l~SGdsdG~v~~wdwkt~kl~~~lkah 473 (503)
T KOG0282|consen 413 STVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRT-LCSGDSDGKVNFWDWKTTKLVSKLKAH 473 (503)
T ss_pred ecccccccCHhhhhcceeccCceeeEEEcCCCCe-EEeecCCccEEEeechhhhhhhccccC
Confidence 8754321 1223455663 44667899999995 999999999999999998877665444
No 68
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=8.7e-29 Score=231.69 Aligned_cols=229 Identities=22% Similarity=0.303 Sum_probs=177.6
Q ss_pred eeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEE
Q 013827 149 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 228 (436)
Q Consensus 149 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vw 228 (436)
|+.++.|++|+.... .....+.+|.+.|.+++|+|+...+|++|+.|++|+||
T Consensus 50 GG~~gvI~L~~~~r~---------------------------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIW 102 (568)
T PTZ00420 50 GGLIGAIRLENQMRK---------------------------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVW 102 (568)
T ss_pred CCceeEEEeeecCCC---------------------------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Confidence 556778888886532 22334668999999999999755799999999999999
Q ss_pred eCCCCe--------EEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCc
Q 013827 229 DVAAGK--------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 300 (436)
Q Consensus 229 d~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 300 (436)
|+.++. ++..+.+|...|.+++|+|++..++++++.|++|++||+++..... ...+...+.+++|+|+| .
T Consensus 103 Di~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~-~i~~~~~V~SlswspdG-~ 180 (568)
T PTZ00420 103 EIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF-QINMPKKLSSLKWNIKG-N 180 (568)
T ss_pred ECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE-EEecCCcEEEEEECCCC-C
Confidence 997642 3456788999999999999985567899999999999999877544 23456789999999988 5
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEE-----EecCCCCCEEEEEeCCC----cEEEEECCC-
Q 013827 301 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI-----SYNPLVPNLLATGSTDK----MVKLWDLSN- 370 (436)
Q Consensus 301 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~p~~~~~l~~~~~d~----~i~iwd~~~- 370 (436)
++++++.|+.|++||++++ ..+..+.+|.+.+... .|++++ .+|++++.|+ .|+|||++.
T Consensus 181 lLat~s~D~~IrIwD~Rsg---------~~i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 181 LLSGTCVGKHMHIIDPRKQ---------EIASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred EEEEEecCCEEEEEECCCC---------cEEEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCC
Confidence 8888999999999999987 5567888898765433 345777 7888877664 799999995
Q ss_pred CCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 371 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 371 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
.++.....+..+.+.+......++|. ++++|+.|+.|++|++..+.
T Consensus 251 ~~pl~~~~ld~~~~~L~p~~D~~tg~-l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 251 TSALVTMSIDNASAPLIPHYDESTGL-IYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCceEEEEecCCccceEEeeeCCCCC-EEEEEECCCeEEEEEccCCc
Confidence 44444444555555554444555676 68889999999999998764
No 69
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.1e-29 Score=227.70 Aligned_cols=217 Identities=26% Similarity=0.383 Sum_probs=183.9
Q ss_pred ccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEE----------------------------------
Q 013827 194 YKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL---------------------------------- 239 (436)
Q Consensus 194 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~---------------------------------- 239 (436)
..+.+|...|.+++++.+. ..++||+ .+++++|+..+.++++++
T Consensus 367 i~~~GHR~dVRsl~vS~d~-~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~ 444 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDS-ILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASA 444 (888)
T ss_pred eeeccchhheeEEEeecCc-eeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehh
Confidence 3456899999999999983 3555554 579999999877666532
Q ss_pred ------cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCC------------ccceEeeeCCeeEEEeCCCCCcE
Q 013827 240 ------EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH------------SGFKWAVAADVESLAWDPHAEHS 301 (436)
Q Consensus 240 ------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------~~~~~~~~~~i~~~~~~~~~~~~ 301 (436)
+.|.+.|++++.+|++ ..+++|+.|.+|++||..-... ..........+.++.++|++ .+
T Consensus 445 ~l~Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg-k~ 522 (888)
T KOG0306|consen 445 SLVETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG-KL 522 (888)
T ss_pred hhhhhhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC-cE
Confidence 3489999999999999 8899999999999999752111 01233457789999999988 69
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCC
Q 013827 302 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP 381 (436)
Q Consensus 302 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 381 (436)
++++--|.++++|-+.+. +....+.+|.-||.|+..+|++ .+++||+.|.+|++|-+.-+. +...+.+
T Consensus 523 LaVsLLdnTVkVyflDtl---------KFflsLYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGD--CHKS~fA 590 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTL---------KFFLSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGD--CHKSFFA 590 (888)
T ss_pred EEEEeccCeEEEEEecce---------eeeeeecccccceeEEeccCCc-CeEEeccCCCceEEeccccch--hhhhhhc
Confidence 999999999999999987 6677899999999999999998 999999999999999999888 7778889
Q ss_pred CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccCCC
Q 013827 382 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 427 (436)
Q Consensus 382 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (436)
|...|.++.|.|... ++.++|.|+.|+-||-.+-+.++.+.++..
T Consensus 591 HdDSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ 635 (888)
T KOG0306|consen 591 HDDSVMSVQFLPKTH-LFFTCGKDGKVKQWDGEKFEEIQKLDGHHS 635 (888)
T ss_pred ccCceeEEEEcccce-eEEEecCcceEEeechhhhhhheeeccchh
Confidence 999999999999766 799999999999999999999888777654
No 70
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=2.3e-29 Score=234.81 Aligned_cols=286 Identities=26% Similarity=0.386 Sum_probs=238.7
Q ss_pred CccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCce-eeecccccCcCcceeecccCCCCCCCCCcEEEEee
Q 013827 72 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNL-YVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 150 (436)
Q Consensus 72 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 150 (436)
+...+.+..|+ +..+.++..+. .+.+|+......... +..|...+ .++++ ..-+.+|++|+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~-----tl~~~~~~~~~~i~~~l~GH~g~V----~~l~~-------~~~~~~lvsgS 268 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDS-----TLHLWDLNNGYLILTRLVGHFGGV----WGLAF-------PSGGDKLVSGS 268 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCc-----eeEEeecccceEEEeeccCCCCCc----eeEEE-------ecCCCEEEEEe
Confidence 56678888998 55677776665 667787777644333 45555444 34444 33588999999
Q ss_pred CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 013827 151 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 230 (436)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~ 230 (436)
.|.+++|||..++++... +.+|...|.++...+. ++++|+.|.+|++|++
T Consensus 269 ~D~t~rvWd~~sg~C~~~---------------------------l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v 318 (537)
T KOG0274|consen 269 TDKTERVWDCSTGECTHS---------------------------LQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDV 318 (537)
T ss_pred cCCcEEeEecCCCcEEEE---------------------------ecCCCceEEEEEccCc---eEeeccCCceEEEEec
Confidence 999999999998887765 5589999999998764 7889999999999999
Q ss_pred CCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCc
Q 013827 231 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT 310 (436)
Q Consensus 231 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~ 310 (436)
+++.++..+.+|.++|.++..+ + .++++|+.|++|.+||+.+.+......+|...|.++.+.+. ..+++|+.|++
T Consensus 319 ~n~~~l~l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~ 393 (537)
T KOG0274|consen 319 TNGACLNLLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTT 393 (537)
T ss_pred cCcceEEEeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc--ceEEeeeeccc
Confidence 9999999999999999999998 4 78999999999999999999999989999999999988764 68999999999
Q ss_pred EEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCC-CCCcEEEE
Q 013827 311 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP-KAGAVFSV 389 (436)
Q Consensus 311 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~v~~~ 389 (436)
|++||+++.. +++..+.+|..-+..+.+.. ++|++++.|++|++||..+++ ++....+ |.+.|..+
T Consensus 394 IkvWdl~~~~--------~c~~tl~~h~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~~--~~~~~~~~~~~~v~~l 460 (537)
T KOG0274|consen 394 IKVWDLRTKR--------KCIHTLQGHTSLVSSLLLRD---NFLVSSSADGTIKLWDAEEGE--CLRTLEGRHVGGVSAL 460 (537)
T ss_pred eEeecCCchh--------hhhhhhcCCccccccccccc---ceeEeccccccEEEeecccCc--eeeeeccCCcccEEEe
Confidence 9999999862 56889999999998777663 899999999999999999998 4555555 67889988
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccCC
Q 013827 390 AFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 426 (436)
Q Consensus 390 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (436)
++. .. .+++++.||.+++||+.+++.+++.+...
T Consensus 461 ~~~--~~-~il~s~~~~~~~l~dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 461 ALG--KE-EILCSSDDGSVKLWDLRSGTLIRTLLSTD 494 (537)
T ss_pred ecC--cc-eEEEEecCCeeEEEecccCchhhhhhhcc
Confidence 887 23 57889999999999999999998775443
No 71
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3.2e-29 Score=200.46 Aligned_cols=243 Identities=23% Similarity=0.424 Sum_probs=209.1
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
+.+|..||+|+.|+++.||+++.... .......+|.+.|-.++|+|..+.+++++
T Consensus 29 n~~g~~lasgs~dktv~v~n~e~~r~-------------------------~~~~~~~gh~~svdql~w~~~~~d~~ata 83 (313)
T KOG1407|consen 29 NCDGTKLASGSFDKTVSVWNLERDRF-------------------------RKELVYRGHTDSVDQLCWDPKHPDLFATA 83 (313)
T ss_pred cccCceeeecccCCceEEEEecchhh-------------------------hhhhcccCCCcchhhheeCCCCCcceEEe
Confidence 78999999999999999999985422 22333568999999999999888899999
Q ss_pred eCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCC
Q 013827 220 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 299 (436)
Q Consensus 220 ~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 299 (436)
+.|.+|++||++.+++...+....+. .-+.|+|+| .+++.++.|..|.+.|.++.+... .......+..++|+.++
T Consensus 84 s~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~-~~~~~~e~ne~~w~~~n- 159 (313)
T KOG1407|consen 84 SGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDG-EYIAVGNKDDRITFIDARTYKIVN-EEQFKFEVNEISWNNSN- 159 (313)
T ss_pred cCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCC-CEEEEecCcccEEEEEecccceee-hhcccceeeeeeecCCC-
Confidence 99999999999999999888744444 458899999 899999999999999999876554 44556678888998544
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEee
Q 013827 300 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 379 (436)
Q Consensus 300 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 379 (436)
.+++.....|.|.|...... +++..+++|.....|+.|+|+| ++||+|+.|..+.+||+... .++..+
T Consensus 160 d~Fflt~GlG~v~ILsypsL---------kpv~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~EL--iC~R~i 227 (313)
T KOG1407|consen 160 DLFFLTNGLGCVEILSYPSL---------KPVQSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDEL--ICERCI 227 (313)
T ss_pred CEEEEecCCceEEEEecccc---------ccccccccCCcceEEEEECCCC-ceEeeccccceeeccChhHh--hhheee
Confidence 67887788899999998876 7899999999999999999999 99999999999999999764 477788
Q ss_pred CCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccccc
Q 013827 380 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 424 (436)
Q Consensus 380 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (436)
..+.-+|+.+.|+.||+ +||+++.|..|-|=++++|..+.+..-
T Consensus 228 sRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd~~~eI~~ 271 (313)
T KOG1407|consen 228 SRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGDRVWEIPC 271 (313)
T ss_pred ccccCceEEEEeccCcc-eeeccCccceEEeEecccCCeEEEeec
Confidence 88889999999999999 599999999999999999988766543
No 72
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5.2e-30 Score=211.21 Aligned_cols=256 Identities=19% Similarity=0.303 Sum_probs=212.2
Q ss_pred CCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 139 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 139 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
|||||+||++|+.||.|.|||.-+++..... +....-.+--+.++|.|+.|+.|. .+||+
T Consensus 221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKDL-------------------kYQAqd~fMMmd~aVlci~FSRDs-EMlAs 280 (508)
T KOG0275|consen 221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKDL-------------------KYQAQDNFMMMDDAVLCISFSRDS-EMLAS 280 (508)
T ss_pred eCCCCceEeeccccceeeeehhccchhhhhh-------------------hhhhhcceeecccceEEEeecccH-HHhhc
Confidence 4999999999999999999999876643221 111112234578999999999995 69999
Q ss_pred EeCCCcEEEEeCCCCeEEEEEc-ccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCC
Q 013827 219 ASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 297 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~ 297 (436)
|+.||.|++|.+++|.|++.|. .|+..|+++.|+.++ ..+++++.|.++++.-+..++....+.+|.+-|+.+.|.++
T Consensus 281 GsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d 359 (508)
T KOG0275|consen 281 GSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD 359 (508)
T ss_pred cCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHhcCccccccceEEcCC
Confidence 9999999999999999999996 899999999999999 88999999999999999999999999999999999999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEe--ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCcee
Q 013827 298 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 375 (436)
Q Consensus 298 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~ 375 (436)
| ..+++++.||+|++|+..+. .++.+++ +...+|+.+..-|.++..++++...++|.+.++...-...
T Consensus 360 G-~~iisaSsDgtvkvW~~Ktt---------eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrs 429 (508)
T KOG0275|consen 360 G-HHIISASSDGTVKVWHGKTT---------ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRS 429 (508)
T ss_pred C-CeEEEecCCccEEEecCcch---------hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEee
Confidence 8 68999999999999999988 4444443 3456889999999888999999999999999987543111
Q ss_pred EEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccCC
Q 013827 376 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 426 (436)
Q Consensus 376 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (436)
...-....+...+.+.+|.|.+ +.+.+.|+.++-|.+.+|+.-+.+..+.
T Consensus 430 fsSGkREgGdFi~~~lSpkGew-iYcigED~vlYCF~~~sG~LE~tl~VhE 479 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPKGEW-IYCIGEDGVLYCFSVLSGKLERTLPVHE 479 (508)
T ss_pred eccCCccCCceEEEEecCCCcE-EEEEccCcEEEEEEeecCceeeeeeccc
Confidence 1111223456778889999996 7778999999999999998877665543
No 73
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=6.1e-29 Score=213.80 Aligned_cols=269 Identities=21% Similarity=0.360 Sum_probs=210.8
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCc--------eeeecccccCcCcceeecccCCCCCCC
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPN--------LYVHHHIIIPAFPLCMAWLDCPLKDRE 141 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~s~ 141 (436)
..|+++|..+...|+.+.++++...+. .+.|+.|......... .+..|+.. ...+.|- ..
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~--dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e----g~glsWn------~~ 188 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSG--DVYVFDYTKHPSKPKASGECRPDLRLKGHEKE----GYGLSWN------RQ 188 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCC--CEEEEEeccCCCcccccccCCCceEEEeeccc----ccccccc------cc
Confidence 368899999999999988877655542 2344444333222111 23334332 2335562 22
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 221 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 221 (436)
..-.|++|+.|++|++||+....... +.......+.+|...|..++|++....++++++.
T Consensus 189 ~~g~Lls~~~d~~i~lwdi~~~~~~~--------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d 248 (422)
T KOG0264|consen 189 QEGTLLSGSDDHTICLWDINAESKED--------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD 248 (422)
T ss_pred cceeEeeccCCCcEEEEeccccccCC--------------------ccccceEEeecCCcceehhhccccchhhheeecC
Confidence 45678999999999999998644321 2244555678999999999999988889999999
Q ss_pred CCcEEEEeCC--CCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc-cceEeeeCCeeEEEeCCCC
Q 013827 222 DKQVKIWDVA--AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVAADVESLAWDPHA 298 (436)
Q Consensus 222 dg~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~i~~~~~~~~~ 298 (436)
|+.+.|||++ +.++.....+|..+|.|++|+|.+..+||+|+.|++|.+||+|..... ..+..|...|..|.|+|+.
T Consensus 249 d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~ 328 (422)
T KOG0264|consen 249 DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN 328 (422)
T ss_pred CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCC
Confidence 9999999999 566677788999999999999988899999999999999999987654 4455789999999999999
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCC-----CCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 013827 299 EHSFVVSLEDGTIKGFDIRTAKSDP-----DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 299 ~~~~~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~ 370 (436)
+.++++++.|+.+.+||+....... ...+.++++.-.+|...|..+.|+|+.+..|++.+.|+.+.||.+..
T Consensus 329 etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 329 ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9999999999999999997654322 12234556777899999999999999999999999999999999874
No 74
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=4.8e-30 Score=217.65 Aligned_cols=282 Identities=18% Similarity=0.286 Sum_probs=220.3
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCC--CCceeeecccccCcCcceeecccCCCCCCCCCcEEE
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG--DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA 147 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 147 (436)
.-|..++.++.|-++...|++|+.+. .|.+|+....+ ....+...... . ..++|.+++++++
T Consensus 172 d~h~gev~~v~~l~~sdtlatgg~Dr-----~Ik~W~v~~~k~~~~~tLaGs~g~----i-------t~~d~d~~~~~~i 235 (459)
T KOG0288|consen 172 DAHEGEVHDVEFLRNSDTLATGGSDR-----IIKLWNVLGEKSELISTLAGSLGN----I-------TSIDFDSDNKHVI 235 (459)
T ss_pred hccccccceeEEccCcchhhhcchhh-----hhhhhhcccchhhhhhhhhccCCC----c-------ceeeecCCCceEE
Confidence 45789999999999999999999987 66666655542 01111111111 1 2344588999999
Q ss_pred EeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEE
Q 013827 148 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 227 (436)
Q Consensus 148 ~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~v 227 (436)
+++.|+.+++|+++..+. ..++.+|++.|+++.|.... ..+++|+.|.+|++
T Consensus 236 Aas~d~~~r~Wnvd~~r~---------------------------~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~ 287 (459)
T KOG0288|consen 236 AASNDKNLRLWNVDSLRL---------------------------RHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKL 287 (459)
T ss_pred eecCCCceeeeeccchhh---------------------------hhhhcccccceeeehhhccc-cceeeccccchhhh
Confidence 999999999999986444 44477999999999999873 45999999999999
Q ss_pred EeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeC
Q 013827 228 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE 307 (436)
Q Consensus 228 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 307 (436)
||+....+.+++- ..+.+..|..++ ..+++|..|++|++||.++..... .....+.|+++..++++ ..+.+++.
T Consensus 288 WDl~k~~C~kt~l-~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~-sv~~gg~vtSl~ls~~g-~~lLsssR 361 (459)
T KOG0288|consen 288 WDLQKAYCSKTVL-PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTR-SVPLGGRVTSLDLSMDG-LELLSSSR 361 (459)
T ss_pred hhhhhhheecccc-ccccccceEecc---eeeeecccccceEEEeccCCceee-EeecCcceeeEeeccCC-eEEeeecC
Confidence 9999988887765 345666777663 568999999999999999888776 44556699999999987 56777799
Q ss_pred CCcEEEEeCCCCCCCCCCCCCcccEEEecc----CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCC
Q 013827 308 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAH----DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA 383 (436)
Q Consensus 308 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 383 (436)
|.++.+.|+++. .....+... ....+.+.|+|++ .|+++|+.||.|+||++.+++...........
T Consensus 362 Ddtl~viDlRt~---------eI~~~~sA~g~k~asDwtrvvfSpd~-~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~ 431 (459)
T KOG0288|consen 362 DDTLKVIDLRTK---------EIRQTFSAEGFKCASDWTRVVFSPDG-SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN 431 (459)
T ss_pred CCceeeeecccc---------cEEEEeeccccccccccceeEECCCC-ceeeeccCCCcEEEEEccCceEEEEeccCCCC
Confidence 999999999987 333333321 2347899999998 99999999999999999999865554444333
Q ss_pred CcEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 013827 384 GAVFSVAFSEDSPFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 384 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 412 (436)
..|++++|+|.|.+ |++++.++.+.+|.
T Consensus 432 ~aI~s~~W~~sG~~-Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 432 AAITSLSWNPSGSG-LLSADKQKAVTLWT 459 (459)
T ss_pred cceEEEEEcCCCch-hhcccCCcceEecC
Confidence 46999999999997 77799999999993
No 75
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.7e-28 Score=200.34 Aligned_cols=278 Identities=17% Similarity=0.294 Sum_probs=215.1
Q ss_pred CCccccccceecc-CCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 71 EDSEDLEDMTINP-NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 71 ~~~~~v~~~~~sp-~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
..++.|.+++||| ...++++++.|+ +|.+|+..... .+...........++|+.| +.||..+++|
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~-----tVR~wevq~~g--~~~~ka~~~~~~PvL~v~W-------sddgskVf~g 90 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDG-----TVRIWEVQNSG--QLVPKAQQSHDGPVLDVCW-------SDDGSKVFSG 90 (347)
T ss_pred CcccchheeEeccccCceEEecccCC-----ceEEEEEecCC--cccchhhhccCCCeEEEEE-------ccCCceEEee
Confidence 3457899999999 566666787787 66666655421 1111233445567789999 8899999999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCC-cEEEEEeCCCcEEEE
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR-NILASASADKQVKIW 228 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~dg~v~vw 228 (436)
+.|+.+++||+.+++... ...|.++|.++.|-+... ..|+||+.|.+|+.|
T Consensus 91 ~~Dk~~k~wDL~S~Q~~~----------------------------v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfW 142 (347)
T KOG0647|consen 91 GCDKQAKLWDLASGQVSQ----------------------------VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFW 142 (347)
T ss_pred ccCCceEEEEccCCCeee----------------------------eeecccceeEEEEecCCCcceeEecccccceeec
Confidence 999999999999876544 346999999999987632 389999999999999
Q ss_pred eCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccc--eEeeeCCeeEEEeCCCCCcEEEEEe
Q 013827 229 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF--KWAVAADVESLAWDPHAEHSFVVSL 306 (436)
Q Consensus 229 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~ 306 (436)
|++...++.++. ..+.++++..-. .+++++..+..|.+|+++.+..... ....+-.+.+++..++.. ..+.|+
T Consensus 143 D~R~~~pv~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~-~~alGs 217 (347)
T KOG0647|consen 143 DTRSSNPVATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD-GFALGS 217 (347)
T ss_pred ccCCCCeeeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC-ceEeee
Confidence 999988888887 567788877653 5788999999999999987654422 223566788999888764 469999
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCC---------CeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEE
Q 013827 307 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK---------AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 377 (436)
Q Consensus 307 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 377 (436)
-+|.+.+..+..+.. ..-.+++.|.. .|++++|+|.. ..|+|++.||++.+||-.... .+.
T Consensus 218 iEGrv~iq~id~~~~-------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~--kLk 287 (347)
T KOG0647|consen 218 IEGRVAIQYIDDPNP-------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDART--KLK 287 (347)
T ss_pred ecceEEEEecCCCCc-------cCceeEEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhh--hhh
Confidence 999999999887532 33456666652 57899999987 899999999999999998776 466
Q ss_pred eeCCCCCcEEEEEEcCCCCcEEEEEeCC
Q 013827 378 SRNPKAGAVFSVAFSEDSPFVLAIGGSK 405 (436)
Q Consensus 378 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d 405 (436)
..+.|..+|++.+|+.+|.++..+.+.|
T Consensus 288 ~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 288 TSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred ccCcCCCccceeEecCCCCEEEEEeecc
Confidence 6678899999999999999544444444
No 76
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=9.3e-29 Score=215.51 Aligned_cols=302 Identities=16% Similarity=0.213 Sum_probs=222.1
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCc---CcceeecccCCCCCCCCCcEEE
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPA---FPLCMAWLDCPLKDREKGNFMA 147 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~l~ 147 (436)
+|...|.++++.|.|..+++|+.+- .|..|+...-.... .+.....|. ....++| ++.|..|+
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy-----~v~~wDf~gMdas~--~~fr~l~P~E~h~i~sl~y-------s~Tg~~iL 230 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDY-----TVKFWDFQGMDASM--RSFRQLQPCETHQINSLQY-------SVTGDQIL 230 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccc-----eEEEEecccccccc--hhhhccCcccccccceeee-------cCCCCeEE
Confidence 5677889999999999999999886 55555544321111 111111111 1123444 89999999
Q ss_pred EeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEE
Q 013827 148 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 227 (436)
Q Consensus 148 ~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~v 227 (436)
+.+....++|+|-+..+..+.. +.-+...-...-+||...++|.+|+|.....+++++.||++|+
T Consensus 231 vvsg~aqakl~DRdG~~~~e~~---------------KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 231 VVSGSAQAKLLDRDGFEIVEFS---------------KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRI 295 (641)
T ss_pred EEecCcceeEEccCCceeeeee---------------ccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEE
Confidence 9999999999998866554431 2223444555567999999999999998889999999999999
Q ss_pred EeCCCCeE-EEEE-----cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc---ceEeeeC--CeeEEEeCC
Q 013827 228 WDVAAGKC-NLTL-----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG---FKWAVAA--DVESLAWDP 296 (436)
Q Consensus 228 wd~~~~~~-~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~~~~--~i~~~~~~~ 296 (436)
||+...+. .+.+ .+..-++++++|++++ ..|++|+.||.|.+|+.+...... ....|.. .|+++.|++
T Consensus 296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~ 374 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY 374 (641)
T ss_pred EecCCchhheeEEeeccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc
Confidence 99976532 2233 2345578999999999 889999999999999986543322 2234554 899999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEecc--CCCeEEEEecCCCCCEEEEEeC------CCcEEEEEC
Q 013827 297 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGST------DKMVKLWDL 368 (436)
Q Consensus 297 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~------d~~i~iwd~ 368 (436)
+| ++|++-+.|+++++||++..+ +++....+- ..+-+.++|+|+. .+|++|.. .|.+.+||.
T Consensus 375 dg-~~LlSRg~D~tLKvWDLrq~k--------kpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 375 DG-NYLLSRGFDDTLKVWDLRQFK--------KPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred cc-chhhhccCCCceeeeeccccc--------cchhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEec
Confidence 88 689999999999999999874 333333322 2345788999998 89999864 467999999
Q ss_pred CCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 369 SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 369 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
.+.+ .+..+.-....|..+.|+|.-.. +..|+.||++++|-=.+
T Consensus 445 ~t~d--~v~ki~i~~aSvv~~~WhpkLNQ-i~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 445 MTLD--TVYKIDISTASVVRCLWHPKLNQ-IFAGSGDGTAHVYYDPN 488 (641)
T ss_pred ccee--eEEEecCCCceEEEEeecchhhh-eeeecCCCceEEEECcc
Confidence 8877 45555555778999999998776 55588899999875433
No 77
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.1e-28 Score=212.34 Aligned_cols=298 Identities=22% Similarity=0.300 Sum_probs=223.9
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCC--ce-----eeeccccc-------CcCcceeecccC
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDP--NL-----YVHHHIII-------PAFPLCMAWLDC 135 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~--~~-----~~~~~~~~-------~~~~~~~~~~~~ 135 (436)
..|.-.+.+++++|++.+.+.++.++ .|.-|+...+... .+ ...|..+. ....+|++-
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g-----~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av--- 210 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDG-----TILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV--- 210 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCc-----ceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE---
Confidence 46788899999999999999999887 4444443333211 00 00011111 112345544
Q ss_pred CCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcE
Q 013827 136 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 215 (436)
Q Consensus 136 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 215 (436)
|+||+|||+|+.|..|.||+.++.+.+.. +.+|.+.|.+++|-.. ..-
T Consensus 211 ----S~Dgkylatgg~d~~v~Iw~~~t~ehv~~---------------------------~~ghr~~V~~L~fr~g-t~~ 258 (479)
T KOG0299|consen 211 ----SSDGKYLATGGRDRHVQIWDCDTLEHVKV---------------------------FKGHRGAVSSLAFRKG-TSE 258 (479)
T ss_pred ----cCCCcEEEecCCCceEEEecCcccchhhc---------------------------ccccccceeeeeeecC-ccc
Confidence 99999999999999999999988666553 6689999999999876 568
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeC
Q 013827 216 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD 295 (436)
Q Consensus 216 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~ 295 (436)
|++++.|++|++|+++....+.++.+|++.|.++.-...+ +.+-+|+.|+++++|++..... ..+.++.+.+-+++|-
T Consensus 259 lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~eesq-lifrg~~~sidcv~~I 336 (479)
T KOG0299|consen 259 LYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEESQ-LIFRGGEGSIDCVAFI 336 (479)
T ss_pred eeeeecCCceEEEehhHhHHHHHHhCCccceeeechhccc-ceEEeccccceeEEEeccccce-eeeeCCCCCeeeEEEe
Confidence 9999999999999999999999999999999999988887 7777778999999999954443 3366778899999998
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE---eccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC-
Q 013827 296 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL---HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN- 371 (436)
Q Consensus 296 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~- 371 (436)
.+ ..+++|+.+|.|.+|++.+.++.........+... ..+...|++++..|.. .++|+|+.+|.|++|-+..+
T Consensus 337 n~--~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 337 ND--EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred cc--cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccC-ceEEecCCCCceEEEEecCCc
Confidence 75 46999999999999999887432211111111111 1122479999999977 99999999999999999887
Q ss_pred -CceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 013827 372 -QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 372 -~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 413 (436)
+...+..+. -.+.|++++|+++|..+++..+....+--|-.
T Consensus 414 r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 414 RAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred cccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence 222333333 56789999999999977777777766666644
No 78
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.3e-29 Score=226.47 Aligned_cols=301 Identities=20% Similarity=0.223 Sum_probs=233.1
Q ss_pred CccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCC-ceeeecccccCcCcceeecccCCCCCCCCCcEEEEee
Q 013827 72 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDP-NLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 150 (436)
Q Consensus 72 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 150 (436)
-+....++...++-..+++++..- ++|+-.+.....+. .+..........-...+.|- .-+.++||+++
T Consensus 38 ~k~~~nAIs~nr~~~qiv~AGrs~----lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~------~~~~NlIAT~s 107 (839)
T KOG0269|consen 38 LKAKANAISVNRDINQIVVAGRSL----LKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWG------QLYSNLIATCS 107 (839)
T ss_pred cccccceEeecCCcceeEEecccc----eeeEeeCcccCCcceeeecccccceeeehhhcccc------cchhhhheeec
Confidence 345678889999999999887542 55655544433111 11111111111111224452 23688999999
Q ss_pred CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 013827 151 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 230 (436)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~ 230 (436)
..|.|.+||+... .+.+....+..|...++++.|++..+++|++|+.||+|++||+
T Consensus 108 ~nG~i~vWdlnk~------------------------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~Dl 163 (839)
T KOG0269|consen 108 TNGVISVWDLNKS------------------------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDL 163 (839)
T ss_pred CCCcEEEEecCcc------------------------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEee
Confidence 9999999999731 1234455677899999999999998999999999999999999
Q ss_pred CCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc-cceEeeeCCeeEEEeCCCCCcEEEEEeCCC
Q 013827 231 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVAADVESLAWDPHAEHSFVVSLEDG 309 (436)
Q Consensus 231 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg 309 (436)
+..+...++.+....|..++|+|..++.|+++...|.+++||+|..... ..+..|.+++.++.|+|++ .+||+|+.|+
T Consensus 164 R~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK 242 (839)
T KOG0269|consen 164 RSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDK 242 (839)
T ss_pred ecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC-ceeeecCCCc
Confidence 9988888888888999999999988799999999999999999987654 4456899999999999965 7999999999
Q ss_pred cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeC--CCcEEEEECCCCCceeEEeeCCCCCcEE
Q 013827 310 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSNNQPSCIASRNPKAGAVF 387 (436)
Q Consensus 310 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 387 (436)
.|+|||...... .++.++. ...++.++.|-|..+..||+++. |-.|+|||++..- ++...+..|...++
T Consensus 243 ~vkiWd~t~~~~-------~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY-IP~~t~~eH~~~vt 313 (839)
T KOG0269|consen 243 MVKIWDMTDSRA-------KPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY-IPYATFLEHTDSVT 313 (839)
T ss_pred cEEEEeccCCCc-------cceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccc-ccceeeeccCcccc
Confidence 999999987632 3344443 35789999999998888998876 7889999998764 46667888999999
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 388 SVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 388 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
.++|-......+.+++.||+|..-.+.+.
T Consensus 314 ~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 314 GIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 99998755557899999999876555444
No 79
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.6e-29 Score=211.13 Aligned_cols=294 Identities=20% Similarity=0.389 Sum_probs=237.4
Q ss_pred CCcccCCCCCCccccccceeccCC-ceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCC
Q 013827 62 DPYLKDKDDEDSEDLEDMTINPND-AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDR 140 (436)
Q Consensus 62 ~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 140 (436)
.|++... .+|.+.|.+++=+|.. ..+|+|+.|| .|.+|+..+..+...+..|...+..+ |+ .
T Consensus 56 kPFv~~L-~gHrdGV~~lakhp~~ls~~aSGs~DG-----~VkiWnlsqR~~~~~f~AH~G~V~Gi--~v---------~ 118 (433)
T KOG0268|consen 56 KPFVGSL-DGHRDGVSCLAKHPNKLSTVASGSCDG-----EVKIWNLSQRECIRTFKAHEGLVRGI--CV---------T 118 (433)
T ss_pred ccchhhc-cccccccchhhcCcchhhhhhccccCc-----eEEEEehhhhhhhheeecccCceeeE--Ee---------c
Confidence 3444443 5899999999999988 7889999888 88888888876677777787666543 22 2
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEe
Q 013827 141 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 220 (436)
Q Consensus 141 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 220 (436)
...+++++.|.+|+.|.++.. .+.. + .-...+..+.-+..+ ..++||+
T Consensus 119 --~~~~~tvgdDKtvK~wk~~~~-p~~t---------------------------i-lg~s~~~gIdh~~~~-~~FaTcG 166 (433)
T KOG0268|consen 119 --QTSFFTVGDDKTVKQWKIDGP-PLHT---------------------------I-LGKSVYLGIDHHRKN-SVFATCG 166 (433)
T ss_pred --ccceEEecCCcceeeeeccCC-ccee---------------------------e-ecccccccccccccc-ccccccC
Confidence 266889999999999998742 1111 1 124556777777664 5888988
Q ss_pred CCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCc
Q 013827 221 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 300 (436)
Q Consensus 221 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 300 (436)
. .|.|||.+...++..+.--...|.++.|+|....+|+++..|+.|.+||+++..+.. .......-+.++|+|. ..
T Consensus 167 e--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~-KVi~~mRTN~IswnPe-af 242 (433)
T KOG0268|consen 167 E--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK-KVILTMRTNTICWNPE-AF 242 (433)
T ss_pred c--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc-eeeeeccccceecCcc-cc
Confidence 6 599999998899999987788999999999987889999999999999999988776 4555677889999994 47
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeC
Q 013827 301 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 380 (436)
Q Consensus 301 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 380 (436)
.++++.+|..++.||++.. ..++....+|.+.|.++.|+|.| .-+++|+.|.+|+||..+.+...-++ ..
T Consensus 243 nF~~a~ED~nlY~~DmR~l--------~~p~~v~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SRdiY-ht 312 (433)
T KOG0268|consen 243 NFVAANEDHNLYTYDMRNL--------SRPLNVHKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSRDIY-HT 312 (433)
T ss_pred ceeeccccccceehhhhhh--------cccchhhcccceeEEEeccCCCc-chhccccccceEEEeecCCCcchhhh-hH
Confidence 8999999999999999987 37788889999999999999999 89999999999999999887632222 22
Q ss_pred CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccc
Q 013827 381 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 419 (436)
Q Consensus 381 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (436)
-....|.++.||-|.+| +++|+.|+.|++|.....+.+
T Consensus 313 kRMq~V~~Vk~S~Dsky-i~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 313 KRMQHVFCVKYSMDSKY-IISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred hhhheeeEEEEeccccE-EEecCCCcceeeeecchhhhc
Confidence 23457999999999996 889999999999998766554
No 80
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-27 Score=195.20 Aligned_cols=246 Identities=18% Similarity=0.271 Sum_probs=195.7
Q ss_pred CCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 139 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 139 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
|+++|.+|++++.|.++++||..++..+..+ ..+.-.|..++|.... +.++.
T Consensus 22 fs~~G~~litss~dDsl~LYd~~~g~~~~ti---------------------------~skkyG~~~~~Fth~~-~~~i~ 73 (311)
T KOG1446|consen 22 FSDDGLLLITSSEDDSLRLYDSLSGKQVKTI---------------------------NSKKYGVDLACFTHHS-NTVIH 73 (311)
T ss_pred ecCCCCEEEEecCCCeEEEEEcCCCceeeEe---------------------------ecccccccEEEEecCC-ceEEE
Confidence 3999999999999999999999887766543 2345567777776653 45555
Q ss_pred EeC--CCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCC
Q 013827 219 ASA--DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 296 (436)
Q Consensus 219 ~~~--dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~ 296 (436)
++. |.+|+..++.+++.++.|.||...|.+++.+|-+ ..+++++.|++|++||+|..++..... ...-..++|+|
T Consensus 74 sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~--~~~~pi~AfDp 150 (311)
T KOG1446|consen 74 SSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLN--LSGRPIAAFDP 150 (311)
T ss_pred ccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEe--cCCCcceeECC
Confidence 555 8899999999999999999999999999999999 899999999999999999887766333 33345678999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEe---ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc
Q 013827 297 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 373 (436)
Q Consensus 297 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~ 373 (436)
.| .++|++.....|++||+|.... .+-.++. ......+.+.|+|+| .+|+.++..+.+++.|.-++..
T Consensus 151 ~G-LifA~~~~~~~IkLyD~Rs~dk-------gPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 151 EG-LIFALANGSELIKLYDLRSFDK-------GPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFDGTV 221 (311)
T ss_pred CC-cEEEEecCCCeEEEEEecccCC-------CCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccCCcE
Confidence 87 6788888777999999998743 3333333 336778999999999 8999999999999999999885
Q ss_pred eeEEeeCCCCC-cEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccC
Q 013827 374 SCIASRNPKAG-AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 425 (436)
Q Consensus 374 ~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (436)
..........+ .-...+|.||+++ +++|+.||+|.+|+++++..+....+.
T Consensus 222 ~~tfs~~~~~~~~~~~a~ftPds~F-vl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 222 KSTFSGYPNAGNLPLSATFTPDSKF-VLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred eeeEeeccCCCCcceeEEECCCCcE-EEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 44433333222 2257789999996 888999999999999999988765553
No 81
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=5.2e-28 Score=206.63 Aligned_cols=284 Identities=18% Similarity=0.238 Sum_probs=237.2
Q ss_pred ccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCC
Q 013827 73 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME 152 (436)
Q Consensus 73 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 152 (436)
...+.++...|..+.+++|+.+. .+.+++........++.+|...+. | +.++|+...+++++.|
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~-----~av~~d~~s~q~l~~~~Gh~kki~-------~----v~~~~~~~~v~~aSad 282 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDK-----TAVLFDKPSNQILATLKGHTKKIT-------S----VKFHKDLDTVITASAD 282 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCC-----ceEEEecchhhhhhhccCcceEEE-------E----EEeccchhheeecCCc
Confidence 35678888999888999998886 677888777766677777765442 2 2348999999999999
Q ss_pred CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 153 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 232 (436)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~ 232 (436)
..|+||......... ....|..+|+.+..+|.| .||++++.|+...+.|+++
T Consensus 283 ~~i~vws~~~~s~~~---------------------------~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~ 334 (506)
T KOG0289|consen 283 EIIRVWSVPLSSEPT---------------------------SSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISS 334 (506)
T ss_pred ceEEeeccccccCcc---------------------------ccccccccceeeeeccCC-cEEEEecCCceEEEEEccC
Confidence 999999987544322 244799999999999997 5999999999999999999
Q ss_pred CeEEEEEcc--cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCc
Q 013827 233 GKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT 310 (436)
Q Consensus 233 ~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~ 310 (436)
+..+..... ..-.+++.+|+||| .+|.+|..|+.|++||+........+.+|.++|..++|+.+| ++++++.+|+.
T Consensus 335 g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~ 412 (506)
T KOG0289|consen 335 GSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG-YWLATAADDGS 412 (506)
T ss_pred CcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc-eEEEEEecCCe
Confidence 988776653 23458999999999 999999999999999999998888788899999999999987 89999999999
Q ss_pred EEEEeCCCCCCCCCCCCCcccEEEec-cCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEE
Q 013827 311 IKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV 389 (436)
Q Consensus 311 i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 389 (436)
|++||+|..+ ...++.. ...++.++.|.+.| .+|+.++.|=+|++++-.+.++.....+..|.+..+++
T Consensus 413 V~lwDLRKl~---------n~kt~~l~~~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v 482 (506)
T KOG0289|consen 413 VKLWDLRKLK---------NFKTIQLDEKKEVNSLSFDQSG-TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGV 482 (506)
T ss_pred EEEEEehhhc---------ccceeeccccccceeEEEcCCC-CeEEeecceeEEEEEecccccceeeehhhhccccccee
Confidence 9999999873 2333322 22379999999999 89999998888888888777777888888899899999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeC
Q 013827 390 AFSEDSPFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 390 ~~~~~~~~~l~s~~~dg~i~iwd~ 413 (436)
.|....++ +++++.|..++++.+
T Consensus 483 ~Fg~~aq~-l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 483 RFGEHAQY-LASTSMDAILRLYAL 505 (506)
T ss_pred eecccceE-EeeccchhheEEeec
Confidence 99999984 999999999998865
No 82
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2e-27 Score=190.21 Aligned_cols=286 Identities=15% Similarity=0.222 Sum_probs=226.9
Q ss_pred CCCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCC--CceeeecccccCcCcceeecccCCCCCCCCCcE
Q 013827 68 KDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD--PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF 145 (436)
Q Consensus 68 ~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 145 (436)
+..+|...+.+++|+-+|..|++++.+. .+.+|+....+. ...+..|...+ --+.|- .+...+
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dk-----tv~v~n~e~~r~~~~~~~~gh~~sv----dql~w~------~~~~d~ 79 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDK-----TVSVWNLERDRFRKELVYRGHTDSV----DQLCWD------PKHPDL 79 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCC-----ceEEEEecchhhhhhhcccCCCcch----hhheeC------CCCCcc
Confidence 4457888999999999999999999886 555555544321 12222332222 123342 456788
Q ss_pred EEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcE
Q 013827 146 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV 225 (436)
Q Consensus 146 l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 225 (436)
|++++.|.+|++||+.++++..... ....=.-+.|+|+| .+++.++.|..|
T Consensus 80 ~atas~dk~ir~wd~r~~k~~~~i~----------------------------~~~eni~i~wsp~g-~~~~~~~kdD~i 130 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGKCTARIE----------------------------TKGENINITWSPDG-EYIAVGNKDDRI 130 (313)
T ss_pred eEEecCCceEEEEEeccCcEEEEee----------------------------ccCcceEEEEcCCC-CEEEEecCcccE
Confidence 9999999999999998877665431 22333457899997 599999999999
Q ss_pred EEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEE
Q 013827 226 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS 305 (436)
Q Consensus 226 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 305 (436)
...|.++.+.....+ ....+..+.|+.++ .+++.....|+|.|......+++.....|+....++.|+|+| +++++|
T Consensus 131 t~id~r~~~~~~~~~-~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~G-ryfA~G 207 (313)
T KOG1407|consen 131 TFIDARTYKIVNEEQ-FKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDG-RYFATG 207 (313)
T ss_pred EEEEecccceeehhc-ccceeeeeeecCCC-CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCC-ceEeec
Confidence 999999888776665 45678889999666 777777778999999998888888888999999999999998 699999
Q ss_pred eCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCc
Q 013827 306 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA 385 (436)
Q Consensus 306 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 385 (436)
+.|-.+.+||+... .+.+.+..+.-+|..+.|+.+| ++||+|++|..|-|=++.++. .+...+ +.++
T Consensus 208 sADAlvSLWD~~EL---------iC~R~isRldwpVRTlSFS~dg-~~lASaSEDh~IDIA~vetGd--~~~eI~-~~~~ 274 (313)
T KOG1407|consen 208 SADALVSLWDVDEL---------ICERCISRLDWPVRTLSFSHDG-RMLASASEDHFIDIAEVETGD--RVWEIP-CEGP 274 (313)
T ss_pred cccceeeccChhHh---------hhheeeccccCceEEEEeccCc-ceeeccCccceEEeEecccCC--eEEEee-ccCC
Confidence 99999999999987 7788899999999999999999 999999999999999999998 455544 5778
Q ss_pred EEEEEEcCCCCcEEEEEeCC---------CcEEEEeCC
Q 013827 386 VFSVAFSEDSPFVLAIGGSK---------GKLEIWDTL 414 (436)
Q Consensus 386 v~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~ 414 (436)
...++|+|... +||-++.| |.+++|-+.
T Consensus 275 t~tVAWHPk~~-LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 275 TFTVAWHPKRP-LLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred ceeEEecCCCc-eeeEEecCCCCccccccceeEEecCC
Confidence 99999999988 67766654 456666554
No 83
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1e-26 Score=217.81 Aligned_cols=253 Identities=13% Similarity=0.172 Sum_probs=178.3
Q ss_pred EEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCC-CcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhh
Q 013827 101 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEK 179 (436)
Q Consensus 101 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 179 (436)
.+.+|+.........+..|. ..+.+++| +|+ +++||+|+.||+|+|||+.+......
T Consensus 55 vI~L~~~~r~~~v~~L~gH~----~~V~~laf-------sP~~~~lLASgS~DgtIrIWDi~t~~~~~~----------- 112 (568)
T PTZ00420 55 AIRLENQMRKPPVIKLKGHT----SSILDLQF-------NPCFSEILASGSEDLTIRVWEIPHNDESVK----------- 112 (568)
T ss_pred EEEeeecCCCceEEEEcCCC----CCEEEEEE-------cCCCCCEEEEEeCCCeEEEEECCCCCcccc-----------
Confidence 45556554432222223332 34467777 776 78999999999999999975432100
Q ss_pred hhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEE
Q 013827 180 KKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQIL 259 (436)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 259 (436)
........+.+|...|.+++|+|++..+|++++.|++|+|||+++++....+. |...|.+++|+|+| .+|
T Consensus 113 --------~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG-~lL 182 (568)
T PTZ00420 113 --------EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKG-NLL 182 (568)
T ss_pred --------ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCC-CEE
Confidence 00112234568999999999999976677899999999999999998777776 66789999999999 899
Q ss_pred EEEECCCcEEEEecCCCCCccceEeeeCCeeEE-----EeCCCCCcEEEEEeCC----CcEEEEeCCCCCCCCCCCCCcc
Q 013827 260 LSGSFDRSVVMKDARISTHSGFKWAVAADVESL-----AWDPHAEHSFVVSLED----GTIKGFDIRTAKSDPDSTSQQS 330 (436)
Q Consensus 260 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~~~~~~~~d----g~i~i~d~~~~~~~~~~~~~~~ 330 (436)
++++.|+.|++||++++........|.+.+... .|++++ .++++++.+ +.|++||++... .+
T Consensus 183 at~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~--------~p 253 (568)
T PTZ00420 183 SGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTT--------SA 253 (568)
T ss_pred EEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCC--------Cc
Confidence 999999999999999988776666676654332 345766 466666555 479999999642 33
Q ss_pred cEEEe--ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCC
Q 013827 331 SFTLH--AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP 396 (436)
Q Consensus 331 ~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 396 (436)
+.... .+.+.+......+++ .++++|+.|+.|++|++..+....+..+ .+..++.+++|.|...
T Consensus 254 l~~~~ld~~~~~L~p~~D~~tg-~l~lsGkGD~tIr~~e~~~~~~~~l~~~-~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 254 LVTMSIDNASAPLIPHYDESTG-LIYLIGKGDGNCRYYQHSLGSIRKVNEY-KSCSPFRSFGFLPKQI 319 (568)
T ss_pred eEEEEecCCccceEEeeeCCCC-CEEEEEECCCeEEEEEccCCcEEeeccc-ccCCCccceEEccccc
Confidence 44332 233333333333445 8999999999999999987653333322 2567889999999753
No 84
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-26 Score=191.29 Aligned_cols=283 Identities=16% Similarity=0.250 Sum_probs=213.3
Q ss_pred CccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEee-
Q 013827 72 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS- 150 (436)
Q Consensus 72 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~- 150 (436)
....|.++.|+++|.++++++.++ .+.+|+...+........+...+. +..+. +++...+.+..
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dD-----sl~LYd~~~g~~~~ti~skkyG~~----~~~Ft------h~~~~~i~sStk 77 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDD-----SLRLYDSLSGKQVKTINSKKYGVD----LACFT------HHSNTVIHSSTK 77 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCC-----eEEEEEcCCCceeeEeeccccccc----EEEEe------cCCceEEEccCC
Confidence 457899999999999999988887 888888877644444333322221 22232 33444443332
Q ss_pred CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 013827 151 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 230 (436)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~ 230 (436)
.|.+|+..++.+.+.++ .+.||...|++|+.+|-+ ..+++++.|++|++||+
T Consensus 78 ~d~tIryLsl~dNkylR---------------------------YF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDl 129 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNKYLR---------------------------YFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDL 129 (311)
T ss_pred CCCceEEEEeecCceEE---------------------------EcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEe
Confidence 47899999998655443 477999999999999986 58999999999999999
Q ss_pred CCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCC-ccceE----eeeCCeeEEEeCCCCCcEEEEE
Q 013827 231 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKW----AVAADVESLAWDPHAEHSFVVS 305 (436)
Q Consensus 231 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~----~~~~~i~~~~~~~~~~~~~~~~ 305 (436)
+..++...+.....+ .++|.|.| -++|++...+.|++||+|.-.. +-... ......+.+.|+|+| +.++.+
T Consensus 130 R~~~cqg~l~~~~~p--i~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG-K~iLls 205 (311)
T KOG1446|consen 130 RVKKCQGLLNLSGRP--IAAFDPEG-LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG-KSILLS 205 (311)
T ss_pred cCCCCceEEecCCCc--ceeECCCC-cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC-CEEEEE
Confidence 988887777543333 47899999 8888888888999999997532 22122 235678999999998 588888
Q ss_pred eCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCe---EEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCC-
Q 013827 306 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV---CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP- 381 (436)
Q Consensus 306 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~- 381 (436)
+..+.+++.|.-.+ ....++..+...- ....|.|++ .++++|+.||+|.+|+++++.. +....+
T Consensus 206 T~~s~~~~lDAf~G---------~~~~tfs~~~~~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~tg~~--v~~~~~~ 273 (311)
T KOG1446|consen 206 TNASFIYLLDAFDG---------TVKSTFSGYPNAGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLETGKK--VAVLRGP 273 (311)
T ss_pred eCCCcEEEEEccCC---------cEeeeEeeccCCCCcceeEEECCCC-cEEEEecCCCcEEEEEcCCCcE--eeEecCC
Confidence 89999999999888 4455665554332 578899999 9999999999999999999884 444444
Q ss_pred CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 382 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 382 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
+.+++.++.|+|... +++++ +..+.+|=....
T Consensus 274 ~~~~~~~~~fnP~~~-mf~sa--~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 274 NGGPVSCVRFNPRYA-MFVSA--SSNLVFWLPDED 305 (311)
T ss_pred CCCCccccccCCcee-eeeec--CceEEEEecccc
Confidence 788999999999876 46654 457888866543
No 85
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.3e-28 Score=192.22 Aligned_cols=242 Identities=25% Similarity=0.387 Sum_probs=193.2
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEec-CCCCcEEEEEe
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-KEFRNILASAS 220 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~s~~ 220 (436)
-|++|||++.|++|+|+.+..... ..+...+.||.++|+.++|. |.-..+||+++
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~------------------------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs 77 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQ------------------------SKLLAELTGHSGPVWKVAWAHPKFGTILASCS 77 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCC------------------------ceeeeEecCCCCCeeEEeecccccCcEeeEee
Confidence 599999999999999999875443 23444577999999999995 44447999999
Q ss_pred CCCcEEEEeCCCCeE--EEEEcccCCCeEEEEEcCCC-CCEEEEEECCCcEEEEecCCCC---CccceEeeeCCeeEEEe
Q 013827 221 ADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARIST---HSGFKWAVAADVESLAW 294 (436)
Q Consensus 221 ~dg~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~~i~~~~~ 294 (436)
.||.|.||.-+.++- ......|...|++++|.|.+ +-.|++++.||.|.+.+.+... .......|.-.+++++|
T Consensus 78 YDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw 157 (299)
T KOG1332|consen 78 YDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSW 157 (299)
T ss_pred cCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeee
Confidence 999999999887743 34556799999999999975 2578899999999999988762 23345678899999999
Q ss_pred CCC---C----------CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC---CCEEEEEe
Q 013827 295 DPH---A----------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV---PNLLATGS 358 (436)
Q Consensus 295 ~~~---~----------~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~~l~~~~ 358 (436)
.|. | .+.|++|+.|..|+||+.... ......++.+|...|..++|.|.- ...||+++
T Consensus 158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-------~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-------SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred cCcCCCccccccCcccccceeeccCCccceeeeecCCc-------chhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 985 2 246999999999999999886 234556689999999999999954 35899999
Q ss_pred CCCcEEEEECCCC-CceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 359 TDKMVKLWDLSNN-QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 359 ~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
.||++.||..+.. ++-....+......++.+.||..|. +|+.++.|+.|.+|.-..
T Consensus 231 qDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 231 QDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CCCcEEEEEecCccCcccccccccCCcceEEEEEecccc-EEEEecCCcEEEEEEeCC
Confidence 9999999987632 1111222333456899999999999 699999999999997543
No 86
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=7.5e-28 Score=196.60 Aligned_cols=244 Identities=21% Similarity=0.310 Sum_probs=189.2
Q ss_pred CCCC-CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEE
Q 013827 138 KDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 216 (436)
Q Consensus 138 ~~s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 216 (436)
+||| ...++++|+.||+||+|+++......+ .....|.++|.+++|+.+| ..+
T Consensus 34 ~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-------------------------ka~~~~~~PvL~v~Wsddg-skV 87 (347)
T KOG0647|consen 34 AFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-------------------------KAQQSHDGPVLDVCWSDDG-SKV 87 (347)
T ss_pred EeccccCceEEecccCCceEEEEEecCCcccc-------------------------hhhhccCCCeEEEEEccCC-ceE
Confidence 3488 567777999999999999986322211 1234699999999999998 699
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCC-CEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeC
Q 013827 217 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP-QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD 295 (436)
Q Consensus 217 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~ 295 (436)
++|+.|+.+++||+.+++ +..+..|..+|.++.|-+... ..|++|+.|.+|++||+|....+. ....+..+.++..-
T Consensus 88 f~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~-t~~LPeRvYa~Dv~ 165 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA-TLQLPERVYAADVL 165 (347)
T ss_pred EeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeee-eeeccceeeehhcc
Confidence 999999999999999996 566777999999999987652 379999999999999999776655 56677788888765
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCcee
Q 013827 296 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 375 (436)
Q Consensus 296 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~ 375 (436)
. .+++++..+..|.+|+++++.. +.......-.-.+.+++..++. ...+.|+-+|++.+..+..+.+..
T Consensus 166 ~---pm~vVata~r~i~vynL~n~~t-------e~k~~~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 166 Y---PMAVVATAERHIAVYNLENPPT-------EFKRIESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPKD 234 (347)
T ss_pred C---ceeEEEecCCcEEEEEcCCCcc-------hhhhhcCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCccC
Confidence 4 4788999999999999987732 1111111223457889988888 566999999999999998864334
Q ss_pred EEeeCCCC---------CcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 376 IASRNPKA---------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 376 ~~~~~~~~---------~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
-+.+..|. .+|++++|+|.-. .|+|+|.||++.+||-.....+.+
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDARTKLKT 288 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhhhhhhc
Confidence 44555554 2588999999877 599999999999999876655543
No 87
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=6.4e-28 Score=197.72 Aligned_cols=293 Identities=14% Similarity=0.213 Sum_probs=217.4
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCC------CCC---ceeeecccccC-----cCcceeecccC
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG------GDP---NLYVHHHIIIP-----AFPLCMAWLDC 135 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~------~~~---~~~~~~~~~~~-----~~~~~~~~~~~ 135 (436)
..|.....+.+|||||.++|+|+.|. .|.+++.+.- ++. ....+|..... ..+.++
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~-----SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l----- 178 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADA-----SIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDL----- 178 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcc-----eEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccce-----
Confidence 46889999999999999999999987 4444443310 000 00111111100 112233
Q ss_pred CCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcE
Q 013827 136 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 215 (436)
Q Consensus 136 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 215 (436)
.|+|....|++|+.|++|+++|+........ +..-....+|.++.|+|.|. +
T Consensus 179 --~FHPre~ILiS~srD~tvKlFDfsK~saKrA-------------------------~K~~qd~~~vrsiSfHPsGe-f 230 (430)
T KOG0640|consen 179 --DFHPRETILISGSRDNTVKLFDFSKTSAKRA-------------------------FKVFQDTEPVRSISFHPSGE-F 230 (430)
T ss_pred --eecchhheEEeccCCCeEEEEecccHHHHHH-------------------------HHHhhccceeeeEeecCCCc-e
Confidence 4599999999999999999999973222111 11113457899999999984 9
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEE---cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE-ee-eCCee
Q 013827 216 LASASADKQVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AV-AADVE 290 (436)
Q Consensus 216 l~s~~~dg~v~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~-~~~i~ 290 (436)
|+.|..-.++++||+++-++...- .+|.+.|+++.+++.+ ++.++++.||.|++||--..+++..+. .| +..|.
T Consensus 231 llvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevc 309 (430)
T KOG0640|consen 231 LLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVC 309 (430)
T ss_pred EEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceee
Confidence 999999999999999998876544 4699999999999999 999999999999999988887775443 23 45688
Q ss_pred EEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEecc-----CCCeEEEEecCCCCCEEEEEeC-CCcEE
Q 013827 291 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-----DKAVCTISYNPLVPNLLATGST-DKMVK 364 (436)
Q Consensus 291 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~~l~~~~~-d~~i~ 364 (436)
+..|..++ +++++++.|..+++|.+.++ ..+..+.+- ...-+...|+... .+++.-.+ .+.+.
T Consensus 310 Sa~Ftkn~-kyiLsSG~DS~vkLWEi~t~---------R~l~~YtGAg~tgrq~~rtqAvFNhtE-dyVl~pDEas~slc 378 (430)
T KOG0640|consen 310 SAVFTKNG-KYILSSGKDSTVKLWEISTG---------RMLKEYTGAGTTGRQKHRTQAVFNHTE-DYVLFPDEASNSLC 378 (430)
T ss_pred eEEEccCC-eEEeecCCcceeeeeeecCC---------ceEEEEecCCcccchhhhhhhhhcCcc-ceEEccccccCcee
Confidence 99999987 68999999999999999998 555555433 1223445677665 55555443 67899
Q ss_pred EEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 365 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 365 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
-||.++.....+.. -+|.+.+..+.-+|.++ .+++|+.|..+++|--.
T Consensus 379 sWdaRtadr~~l~s-lgHn~a~R~i~HSP~~p-~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 379 SWDARTADRVALLS-LGHNGAVRWIVHSPVEP-AFMTCSDDFRARFWYRR 426 (430)
T ss_pred eccccchhhhhhcc-cCCCCCceEEEeCCCCC-ceeeecccceeeeeeec
Confidence 99999987544443 46999999999999999 59999999999999754
No 88
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.4e-27 Score=214.29 Aligned_cols=362 Identities=18% Similarity=0.236 Sum_probs=247.8
Q ss_pred cCCCCcceeeecceeeccccccceeccC-----CCCCCcccCCCCCCccccccceeccCCceEEEEEecCCcceeEEEEE
Q 013827 31 NASNTSSIWLISGVEIFGKGLGDLYYAS-----NQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYIL 105 (436)
Q Consensus 31 ~~~~t~~~w~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~ 105 (436)
=+++++||++++..+..+++...-+.-. .+..|....+...---+--++.|+|....|.+...+. .+|+|
T Consensus 277 Ca~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndh-----SlYvW 351 (1080)
T KOG1408|consen 277 CAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDH-----SLYVW 351 (1080)
T ss_pred eccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCc-----eEEEE
Confidence 3679999999999999888875433322 2223333322222223345789999999999998887 88888
Q ss_pred ecCCCCCC---ceeeecccccCcCcceeecccCCCCCC-----CCCcEEEEeeCCCcEEEEeCCCCCCCcc--eeeeccc
Q 013827 106 EESDGGDP---NLYVHHHIIIPAFPLCMAWLDCPLKDR-----EKGNFMAVGSMEPAIEIWDLDVIDEVQP--HVILGGI 175 (436)
Q Consensus 106 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s-----~~~~~l~~g~~dg~i~vw~~~~~~~~~~--~~~~~~~ 175 (436)
+...-... .....|..-+ +.++-+++.+.-+ |. ..|.+++.|++|++|+++....-.. ..++...
T Consensus 352 DvrD~~kvgk~~s~lyHS~ci----W~Ve~~p~nv~~~~~aclp~-~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~ 426 (1080)
T KOG1408|consen 352 DVRDVNKVGKCSSMLYHSACI----WDVENLPCNVHSPTAACLPR-GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSAN 426 (1080)
T ss_pred eccccccccceeeeeecccee----eeeccccccccCcccccCCc-cceeEecCCCcEEEeecccccccceeecccchhh
Confidence 87654221 1122222111 1222223222211 22 3489999999999999986221111 0111000
Q ss_pred --------chhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeE
Q 013827 176 --------DEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ 247 (436)
Q Consensus 176 --------~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~ 247 (436)
...+........-..+-.....+....+.+++.+|+| ++||+|..-|.++||++...+....+..|...|.
T Consensus 427 l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEil 505 (1080)
T KOG1408|consen 427 LSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-QHLASGDRGGNLRVYDLQELEYTCFMEAHESEIL 505 (1080)
T ss_pred hhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-ceecccCccCceEEEEehhhhhhhheecccceeE
Confidence 0000000000000111111222345679999999997 6999999999999999999888888899999999
Q ss_pred EEEEcCC--CCCEEEEEECCCcEEEEecCCCC-CccceEeeeC-------------------------------------
Q 013827 248 AVAWNHH--SPQILLSGSFDRSVVMKDARIST-HSGFKWAVAA------------------------------------- 287 (436)
Q Consensus 248 ~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~------------------------------------- 287 (436)
|+.|+.- +..+|++++.|..|+++|+...- ....+..|..
T Consensus 506 cLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~ 585 (1080)
T KOG1408|consen 506 CLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGR 585 (1080)
T ss_pred EEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCce
Confidence 9999853 34689999999999999985331 1122222222
Q ss_pred ------------CeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE---eccCCCeEEEEecCCCCC
Q 013827 288 ------------DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL---HAHDKAVCTISYNPLVPN 352 (436)
Q Consensus 288 ------------~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~ 352 (436)
.+..++..|.. .++++++.|..|+|||+.+++ ....+ .+|.+....+...|.| .
T Consensus 586 ~f~r~t~t~~ktTlYDm~Vdp~~-k~v~t~cQDrnirif~i~sgK---------q~k~FKgs~~~eG~lIKv~lDPSg-i 654 (1080)
T KOG1408|consen 586 LFPRHTQTLSKTTLYDMAVDPTS-KLVVTVCQDRNIRIFDIESGK---------QVKSFKGSRDHEGDLIKVILDPSG-I 654 (1080)
T ss_pred eccccccccccceEEEeeeCCCc-ceEEEEecccceEEEeccccc---------eeeeecccccCCCceEEEEECCCc-c
Confidence 35556666644 689999999999999999983 34444 3566778899999999 9
Q ss_pred EEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 353 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 353 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
||++...|.++.++|+.+++ ++....+|...|+.+.|.+|-++ |++.+.||.|.||.+....
T Consensus 655 Y~atScsdktl~~~Df~sgE--cvA~m~GHsE~VTG~kF~nDCkH-lISvsgDgCIFvW~lp~~m 716 (1080)
T KOG1408|consen 655 YLATSCSDKTLCFVDFVSGE--CVAQMTGHSEAVTGVKFLNDCKH-LISVSGDGCIFVWKLPLTM 716 (1080)
T ss_pred EEEEeecCCceEEEEeccch--hhhhhcCcchheeeeeecccchh-heeecCCceEEEEECchhH
Confidence 99999999999999999998 78888999999999999999997 8889999999999997643
No 89
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.9e-28 Score=215.77 Aligned_cols=244 Identities=21% Similarity=0.358 Sum_probs=205.9
Q ss_pred ccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeee-cccccCcCcceeecccCCCCCCCCCcEEEEeeC
Q 013827 73 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVH-HHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 151 (436)
Q Consensus 73 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 151 (436)
.+.|+++.|+|+|.+||+|..++ .|.+|+..+.+....... |. ..+-|++| ++..+.+|+.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g-----~v~iwD~~~~k~~~~~~~~h~----~rvg~laW---------~~~~lssGsr 278 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDG-----TVQIWDVKEQKKTRTLRGSHA----SRVGSLAW---------NSSVLSSGSR 278 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCC-----eEEEEehhhccccccccCCcC----ceeEEEec---------cCceEEEecC
Confidence 78999999999999999999887 888888766544333333 43 33468889 4888999999
Q ss_pred CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCC
Q 013827 152 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 231 (436)
Q Consensus 152 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~ 231 (436)
|+.|..+|+...+.... .+.+|...|..++|++++ .++|+|+.|+.+.|||..
T Consensus 279 ~~~I~~~dvR~~~~~~~--------------------------~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 279 DGKILNHDVRISQHVVS--------------------------TLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGL 331 (484)
T ss_pred CCcEEEEEEecchhhhh--------------------------hhhcccceeeeeEECCCC-CeeccCCCccceEeccCC
Confidence 99999999985443321 266899999999999997 699999999999999998
Q ss_pred CCeEEEEEcccCCCeEEEEEcCCCCCEEEEEE--CCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEE-EeCC
Q 013827 232 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV-SLED 308 (436)
Q Consensus 232 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~d 308 (436)
..++...+..|...|..++|+|-...+||+|+ .|++|++||..++..+. .......|.++.|++....++.+ |..+
T Consensus 332 ~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~-~vdtgsQVcsL~Wsk~~kEi~sthG~s~ 410 (484)
T KOG0305|consen 332 SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID-SVDTGSQVCSLIWSKKYKELLSTHGYSE 410 (484)
T ss_pred CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec-ccccCCceeeEEEcCCCCEEEEecCCCC
Confidence 88889999999999999999998878999875 68999999999887766 45567889999999977444443 4567
Q ss_pred CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 013827 309 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 309 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
+.|.||+..+. ..+..+.+|...|..++++|++ ..+++|+.|.++++|++-...
T Consensus 411 n~i~lw~~ps~---------~~~~~l~gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 411 NQITLWKYPSM---------KLVAELLGHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred CcEEEEecccc---------ceeeeecCCcceeEEEEECCCC-CEEEEecccCcEEeccccCCC
Confidence 88999999886 6688999999999999999998 899999999999999997743
No 90
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.6e-28 Score=223.90 Aligned_cols=257 Identities=21% Similarity=0.342 Sum_probs=210.2
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
.++-..++.++. ..+.||.+............. . .-..-.-.+..+.|.....++||++
T Consensus 48 nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~-------------------k-~kqn~~~S~~DVkW~~~~~NlIAT~ 106 (839)
T KOG0269|consen 48 NRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRF-------------------K-TKQNKFYSAADVKWGQLYSNLIATC 106 (839)
T ss_pred cCCcceeEEecc-cceeeEeeCcccCCcceeeec-------------------c-cccceeeehhhcccccchhhhheee
Confidence 567777777764 477888876544433322110 0 0011223567788887667899999
Q ss_pred eCCCcEEEEeCCC---CeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCC
Q 013827 220 SADKQVKIWDVAA---GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 296 (436)
Q Consensus 220 ~~dg~v~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~ 296 (436)
+..|.|.+||+.. .+.+..|..|...++++.|++..+++|++|++||+|++||++..+...........|..|.|+|
T Consensus 107 s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp 186 (839)
T KOG0269|consen 107 STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP 186 (839)
T ss_pred cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence 9999999999987 4556678899999999999999999999999999999999999998888888888999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeE
Q 013827 297 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 376 (436)
Q Consensus 297 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 376 (436)
..++.|+++.+.|.+++||+|.. .++...+.+|.++|.++.|+|++ .+||||+.|++|+|||+.+.+....
T Consensus 187 ~~~~~F~s~~dsG~lqlWDlRqp--------~r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~~ 257 (839)
T KOG0269|consen 187 GYGNKFASIHDSGYLQLWDLRQP--------DRCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKPK 257 (839)
T ss_pred CCCceEEEecCCceEEEeeccCc--------hhHHHHhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCccce
Confidence 88899999999999999999987 37778899999999999999987 8999999999999999998765555
Q ss_pred EeeCCCCCcEEEEEEcCCCCcEEEEEeC--CCcEEEEeCCCCccccccccCCC
Q 013827 377 ASRNPKAGAVFSVAFSEDSPFVLAIGGS--KGKLEIWDTLSDAGISNRFSKYS 427 (436)
Q Consensus 377 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~ 427 (436)
.... ...+|.+++|-|..++.||+++. |-.|+|||+...-.....+..+.
T Consensus 258 ~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~ 309 (839)
T KOG0269|consen 258 HTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT 309 (839)
T ss_pred eEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC
Confidence 5544 34589999999999998998774 77899999988777666665554
No 91
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.3e-28 Score=217.67 Aligned_cols=242 Identities=22% Similarity=0.339 Sum_probs=206.8
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
-|.+++|.+||.||.|++|++........ ......++.|.+.|+.++...++ +.|+++
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s---------------------~~~~asme~HsDWVNDiiL~~~~-~tlIS~ 91 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNEPS---------------------TPYIASMEHHSDWVNDIILCGNG-KTLISA 91 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCCcc---------------------cchhhhhhhhHhHHhhHHhhcCC-CceEEe
Confidence 46788999999999999999874332211 12344577899999999999986 489999
Q ss_pred eCCCcEEEEeCCCC--eEEEEEcccCCCeEEEEE-cCCCCCEEEEEECCCcEEEEecCCCCC--c--------cce-Eee
Q 013827 220 SADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAW-NHHSPQILLSGSFDRSVVMKDARISTH--S--------GFK-WAV 285 (436)
Q Consensus 220 ~~dg~v~vwd~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~~l~s~~~d~~i~~wd~~~~~~--~--------~~~-~~~ 285 (436)
+.|-+|++|+...+ -+..++..|.+.|.|+++ .++. .++++|+.|+.|.+||+.++.. . ... .++
T Consensus 92 SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~ 170 (735)
T KOG0308|consen 92 SSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP 170 (735)
T ss_pred cCCceEEEeecccCcchhHhhhhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence 99999999999877 577788899999999999 6665 8999999999999999997632 1 111 256
Q ss_pred eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 013827 286 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL 365 (436)
Q Consensus 286 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~i 365 (436)
..++++++.++.+ ..+++|+..+.+++||.++. ..+..+.+|+..|..+..+++| ..+++++.||+|++
T Consensus 171 k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~---------~kimkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrl 239 (735)
T KOG0308|consen 171 KDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTC---------KKIMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRL 239 (735)
T ss_pred ccceeeeecCCcc-eEEEecCcccceEEeccccc---------cceeeeeccccceEEEEEcCCC-CeEeecCCCceEEe
Confidence 7789999999987 68999999999999999998 5678889999999999999999 89999999999999
Q ss_pred EECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 366 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 366 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
||+...+ ++.++..|...|+++..+|+-.+ +.+|+.||.|..=|+.+...
T Consensus 240 WdLgqQr--Cl~T~~vH~e~VWaL~~~~sf~~-vYsG~rd~~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 240 WDLGQQR--CLATYIVHKEGVWALQSSPSFTH-VYSGGRDGNIYRTDLRNPAK 289 (735)
T ss_pred eeccccc--eeeeEEeccCceEEEeeCCCcce-EEecCCCCcEEecccCCchh
Confidence 9998877 78888899999999999999885 88999999999999988643
No 92
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=9.9e-28 Score=223.91 Aligned_cols=235 Identities=26% Similarity=0.434 Sum_probs=206.9
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCC
Q 013827 143 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 222 (436)
Q Consensus 143 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 222 (436)
..++++++.+++|++|+...+..+.. .+.+|.+.|+++++... ..+|++|+.|
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~--------------------------~l~GH~g~V~~l~~~~~-~~~lvsgS~D 270 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILT--------------------------RLVGHFGGVWGLAFPSG-GDKLVSGSTD 270 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEe--------------------------eccCCCCCceeEEEecC-CCEEEEEecC
Confidence 77899999999999999876544332 26699999999999874 4699999999
Q ss_pred CcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEE
Q 013827 223 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF 302 (436)
Q Consensus 223 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 302 (436)
.++++||..++++...+.+|.+.|.++...+ ..+++|+.|.+|++|++.++.......+|..+|.++..+. .++
T Consensus 271 ~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~---~~l 344 (537)
T KOG0274|consen 271 KTERVWDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDE---PLL 344 (537)
T ss_pred CcEEeEecCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecC---CEE
Confidence 9999999999999999999999999998865 5688899999999999999998887777999999999982 689
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCC
Q 013827 303 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK 382 (436)
Q Consensus 303 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 382 (436)
++|+.|++|++||+.+. +++..+.+|...|.++.+.+. ..+++|+.|++|++||+++.. .++..+.+|
T Consensus 345 vsgs~d~~v~VW~~~~~---------~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~-~c~~tl~~h 412 (537)
T KOG0274|consen 345 VSGSYDGTVKVWDPRTG---------KCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR-KCIHTLQGH 412 (537)
T ss_pred EEEecCceEEEEEhhhc---------eeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchh-hhhhhhcCC
Confidence 99999999999999977 889999999999999988864 689999999999999999982 277888899
Q ss_pred CCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccC
Q 013827 383 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 425 (436)
Q Consensus 383 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (436)
.+.+..+.+. +. +|++++.|+.|++||...+++++.+...
T Consensus 413 ~~~v~~l~~~--~~-~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 413 TSLVSSLLLR--DN-FLVSSSADGTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred cccccccccc--cc-eeEeccccccEEEeecccCceeeeeccC
Confidence 8888666654 44 5999999999999999999999887764
No 93
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=221.00 Aligned_cols=189 Identities=19% Similarity=0.277 Sum_probs=157.0
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 221 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 221 (436)
..++|++++.|.+|++|++...+++..+ .|.+-|+|++|+|.+..++++|+-
T Consensus 379 Kn~fLLSSSMDKTVRLWh~~~~~CL~~F----------------------------~HndfVTcVaFnPvDDryFiSGSL 430 (712)
T KOG0283|consen 379 KNNFLLSSSMDKTVRLWHPGRKECLKVF----------------------------SHNDFVTCVAFNPVDDRYFISGSL 430 (712)
T ss_pred cCCeeEeccccccEEeecCCCcceeeEE----------------------------ecCCeeEEEEecccCCCcEeeccc
Confidence 4568999999999999999988887754 699999999999988889999999
Q ss_pred CCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE--------eeeCCeeEEE
Q 013827 222 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--------AVAADVESLA 293 (436)
Q Consensus 222 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--------~~~~~i~~~~ 293 (436)
||.||||++...+.+.-.. -..-|++++|.|+| ...+.|+.+|.+++|++...+...... .....|+.+.
T Consensus 431 D~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q 508 (712)
T KOG0283|consen 431 DGKVRLWSISDKKVVDWND-LRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQ 508 (712)
T ss_pred ccceEEeecCcCeeEeehh-hhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeE
Confidence 9999999999877655444 44889999999999 899999999999999998766543211 1123799999
Q ss_pred eCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCC--CeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 013827 294 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK--AVCTISYNPLVPNLLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 294 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~ 370 (436)
|.|.....+++.+.|..|+|||.+.. ..+..++++.. .-....|+.+| .+|+++++|..|++|++..
T Consensus 509 ~~p~~~~~vLVTSnDSrIRI~d~~~~---------~lv~KfKG~~n~~SQ~~Asfs~Dg-k~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 509 FFPGDPDEVLVTSNDSRIRIYDGRDK---------DLVHKFKGFRNTSSQISASFSSDG-KHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ecCCCCCeEEEecCCCceEEEeccch---------hhhhhhcccccCCcceeeeEccCC-CEEEEeecCceEEEEeCCC
Confidence 99977777899999999999999776 55666665542 33567899998 9999999999999999743
No 94
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=208.29 Aligned_cols=254 Identities=19% Similarity=0.233 Sum_probs=193.2
Q ss_pred CCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEE
Q 013827 138 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 217 (436)
Q Consensus 138 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 217 (436)
++.|.|.+|++|+.|-+|++||+..+..... ............|.+++|++.|. .|+
T Consensus 174 ~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~----------------------~fr~l~P~E~h~i~sl~ys~Tg~-~iL 230 (641)
T KOG0772|consen 174 AVDPSGARFVSGSLDYTVKFWDFQGMDASMR----------------------SFRQLQPCETHQINSLQYSVTGD-QIL 230 (641)
T ss_pred eecCCCceeeeccccceEEEEecccccccch----------------------hhhccCcccccccceeeecCCCC-eEE
Confidence 4489999999999999999999986554321 12222234456799999999986 555
Q ss_pred EEeCCCcEEEEeCCCCeEEEE------------EcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEee
Q 013827 218 SASADKQVKIWDVAAGKCNLT------------LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV 285 (436)
Q Consensus 218 s~~~dg~v~vwd~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 285 (436)
+.+.....+|+|-...+.... -++|...++|.+|+|.....+++++.||++++||+...+.......+
T Consensus 231 vvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~ 310 (641)
T KOG0772|consen 231 VVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT 310 (641)
T ss_pred EEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee
Confidence 555567899999654433332 25799999999999999889999999999999999877655444432
Q ss_pred ------eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCC--CeEEEEecCCCCCEEEEE
Q 013827 286 ------AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK--AVCTISYNPLVPNLLATG 357 (436)
Q Consensus 286 ------~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~ 357 (436)
.-+++.++|++++ .+|++|..||.|.+|+.+..... .....-.+|.. .|+++.|+++| ++|++-
T Consensus 311 k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~------p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSR 382 (641)
T KOG0772|consen 311 KPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVR------PVMKVKDAHLPGQDITSISFSYDG-NYLLSR 382 (641)
T ss_pred ccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccc------cceEeeeccCCCCceeEEEecccc-chhhhc
Confidence 3468999999998 57999999999999998765321 22344466776 89999999999 999999
Q ss_pred eCCCcEEEEECCCCCceeEEeeCC--CCCcEEEEEEcCCCCcEEEEEeC------CCcEEEEeCCCCcccccccc
Q 013827 358 STDKMVKLWDLSNNQPSCIASRNP--KAGAVFSVAFSEDSPFVLAIGGS------KGKLEIWDTLSDAGISNRFS 424 (436)
Q Consensus 358 ~~d~~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~ 424 (436)
+.|+++++||++..+. ++....+ ..-+-+.++|||+.+ ++++|.+ .|++.+||..+-+.+++..-
T Consensus 383 g~D~tLKvWDLrq~kk-pL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i 455 (641)
T KOG0772|consen 383 GFDDTLKVWDLRQFKK-PLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI 455 (641)
T ss_pred cCCCceeeeecccccc-chhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEEecC
Confidence 9999999999998653 2322222 233567899999999 6888764 47799999988887766543
No 95
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.5e-26 Score=189.64 Aligned_cols=273 Identities=21% Similarity=0.352 Sum_probs=210.0
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEee
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 150 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 150 (436)
..++.|.+|.|+|....|++++.|+ .+.+|+.... ...+...|..++ ++.+|. |...+++|+
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDg-----slrlYdv~~~-~l~~~~~~~~pl----L~c~F~--------d~~~~~~G~ 72 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDG-----SLRLYDVPAN-SLKLKFKHGAPL----LDCAFA--------DESTIVTGG 72 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccC-----cEEEEeccch-hhhhheecCCce----eeeecc--------CCceEEEec
Confidence 3467899999999999999999987 7777776665 223334444333 455552 467799999
Q ss_pred CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 013827 151 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 230 (436)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~ 230 (436)
.||.|+.+|+.++.... +..|..+|.|+.+++. ...+++|+.|++|++||.
T Consensus 73 ~dg~vr~~Dln~~~~~~----------------------------igth~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~ 123 (323)
T KOG1036|consen 73 LDGQVRRYDLNTGNEDQ----------------------------IGTHDEGIRCIEYSYE-VGCVISGSWDKTIKFWDP 123 (323)
T ss_pred cCceEEEEEecCCccee----------------------------eccCCCceEEEEeecc-CCeEEEcccCccEEEEec
Confidence 99999999998765543 4579999999999987 468999999999999999
Q ss_pred CCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccce--EeeeCCeeEEEeCCCCCcEEEEEeCC
Q 013827 231 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--WAVAADVESLAWDPHAEHSFVVSLED 308 (436)
Q Consensus 231 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~d 308 (436)
+.......+. ....|.++.... +.|++|+.+..+.+||+++....... ...+-.+.++++.|++ .-+++++-|
T Consensus 124 R~~~~~~~~d-~~kkVy~~~v~g---~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~-eGy~~sSie 198 (323)
T KOG1036|consen 124 RNKVVVGTFD-QGKKVYCMDVSG---NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG-EGYVVSSIE 198 (323)
T ss_pred cccccccccc-cCceEEEEeccC---CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC-CceEEEeec
Confidence 8755555554 345888888763 67999999999999999987765422 2456679999999965 458889999
Q ss_pred CcEEEEeCCCCCCCCCCCCCcccEEEeccC---------CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEee
Q 013827 309 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHD---------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 379 (436)
Q Consensus 309 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 379 (436)
|.|.+=.+..... .......++.|. .+|++++|+|-. ..|+||+.||.|.+||+...+ .+..+
T Consensus 199 GRVavE~~d~s~~-----~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~rK--rl~q~ 270 (323)
T KOG1036|consen 199 GRVAVEYFDDSEE-----AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNRK--RLKQL 270 (323)
T ss_pred ceEEEEccCCchH-----HhhhceeEEeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcchh--hhhhc
Confidence 9988765554311 113355666665 479999999987 899999999999999999887 44455
Q ss_pred CCCCCcEEEEEEcCCCCcEEEEEeC
Q 013827 380 NPKAGAVFSVAFSEDSPFVLAIGGS 404 (436)
Q Consensus 380 ~~~~~~v~~~~~~~~~~~~l~s~~~ 404 (436)
......|..++|+.+|. +||+++.
T Consensus 271 ~~~~~SI~slsfs~dG~-~LAia~s 294 (323)
T KOG1036|consen 271 AKYETSISSLSFSMDGS-LLAIASS 294 (323)
T ss_pred cCCCCceEEEEeccCCC-eEEEEec
Confidence 55566799999999999 5887764
No 96
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=3.6e-27 Score=201.49 Aligned_cols=231 Identities=22% Similarity=0.319 Sum_probs=197.5
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
.|..+.+++|+.|..+.++|..+.+.+. .+.||...|+.+.|+|+. ..++++
T Consensus 228 ~~s~~~ilTGG~d~~av~~d~~s~q~l~---------------------------~~~Gh~kki~~v~~~~~~-~~v~~a 279 (506)
T KOG0289|consen 228 IPSSSKILTGGEDKTAVLFDKPSNQILA---------------------------TLKGHTKKITSVKFHKDL-DTVITA 279 (506)
T ss_pred cCCCCcceecCCCCceEEEecchhhhhh---------------------------hccCcceEEEEEEeccch-hheeec
Confidence 4456889999999999999987655443 478999999999999995 589999
Q ss_pred eCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEe--eeCCeeEEEeCCC
Q 013827 220 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--VAADVESLAWDPH 297 (436)
Q Consensus 220 ~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~i~~~~~~~~ 297 (436)
+.|..|+||.............|..+|+.+..+|.| .+|++++.|++..+.|++++........ ..-.+++.+|+||
T Consensus 280 Sad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpD 358 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPD 358 (506)
T ss_pred CCcceEEeeccccccCccccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCC
Confidence 999999999998887778888899999999999999 9999999999999999999887653333 2345899999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEE
Q 013827 298 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 377 (436)
Q Consensus 298 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 377 (436)
| .+|.+|..|+.|+|||+.+. ..+..+.+|.++|..++|+.+| .+|+++++|+.|++||++..+.....
T Consensus 359 g-Lifgtgt~d~~vkiwdlks~---------~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 359 G-LIFGTGTPDGVVKIWDLKSQ---------TNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred c-eEEeccCCCceEEEEEcCCc---------cccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhccccee
Confidence 8 79999999999999999987 5578899999999999999999 99999999999999999987754444
Q ss_pred eeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 013827 378 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 378 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 412 (436)
...... .+.++.|.+.|.| |+.++.|=.|++++
T Consensus 428 ~l~~~~-~v~s~~fD~SGt~-L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 428 QLDEKK-EVNSLSFDQSGTY-LGIAGSDLQVYICK 460 (506)
T ss_pred eccccc-cceeEEEcCCCCe-EEeecceeEEEEEe
Confidence 444433 7999999999996 77777775566555
No 97
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=6.7e-28 Score=197.59 Aligned_cols=270 Identities=18% Similarity=0.273 Sum_probs=205.3
Q ss_pred CCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEE
Q 013827 138 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 217 (436)
Q Consensus 138 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 217 (436)
+|++||.++|+|+.|..|+|.|++..-...... ............++..+..|.++|+++.|+|. ..+|+
T Consensus 119 afs~DG~lvATGsaD~SIKildvermlaks~~~---------em~~~~~qa~hPvIRTlYDH~devn~l~FHPr-e~ILi 188 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADASIKILDVERMLAKSKPK---------EMISGDTQARHPVIRTLYDHVDEVNDLDFHPR-ETILI 188 (430)
T ss_pred eeCCCCcEEEccCCcceEEEeehhhhhhhcchh---------hhccCCcccCCceEeehhhccCcccceeecch-hheEE
Confidence 459999999999999999999987322111000 00000111234677888899999999999999 47999
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEc--ccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccc---eEeeeCCeeEE
Q 013827 218 SASADKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF---KWAVAADVESL 292 (436)
Q Consensus 218 s~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~---~~~~~~~i~~~ 292 (436)
+|+.|++|+++|+......+.++ ....+|.++.|+|.| .+++.|..-.++++||+.+.++... ..+|.+.|+++
T Consensus 189 S~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V 267 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQV 267 (430)
T ss_pred eccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeeecCcccccccceeEE
Confidence 99999999999997654333332 245789999999999 8999999999999999998765432 34678899999
Q ss_pred EeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE-eccC-CCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 013827 293 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 293 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~-~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~ 370 (436)
.+++.+ ++.++++.||.|++||--+. .++.++ ..|. ..|++..|..++ +++++.+.|..+++|.+.+
T Consensus 268 ~Ys~t~-~lYvTaSkDG~IklwDGVS~---------rCv~t~~~AH~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t 336 (430)
T KOG0640|consen 268 RYSSTG-SLYVTASKDGAIKLWDGVSN---------RCVRTIGNAHGGSEVCSAVFTKNG-KYILSSGKDSTVKLWEIST 336 (430)
T ss_pred EecCCc-cEEEEeccCCcEEeeccccH---------HHHHHHHhhcCCceeeeEEEccCC-eEEeecCCcceeeeeeecC
Confidence 999987 69999999999999997766 445554 3444 578999999998 9999999999999999999
Q ss_pred CCceeEEeeCCCCC---cEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccCCCCC
Q 013827 371 NQPSCIASRNPKAG---AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP 429 (436)
Q Consensus 371 ~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 429 (436)
++....+.-.+-.+ .-+...|+....|+|.---..+.++-||.++...+...-..+.++
T Consensus 337 ~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a 398 (430)
T KOG0640|consen 337 GRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGA 398 (430)
T ss_pred CceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCC
Confidence 98554444332222 234566888888766666667889999999988776655555443
No 98
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=1.4e-26 Score=208.93 Aligned_cols=281 Identities=19% Similarity=0.320 Sum_probs=219.3
Q ss_pred CCCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCC-CCCcEE
Q 013827 68 KDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDR-EKGNFM 146 (436)
Q Consensus 68 ~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l 146 (436)
...+|+.+|..+++.+.. .++.++.++ ++.+|+...+ ....+|...-+ ..|+.+.+.+. .++-+|
T Consensus 9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~-----t~~vw~~~~~---~~l~~~~~~~~-----~g~i~~~i~y~e~~~~~l 74 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGV-CIISGSRDG-----TVKVWAKKGK---QYLETHAFEGP-----KGFIANSICYAESDKGRL 74 (745)
T ss_pred EeccCccchheeEecCCe-EEeecCCCC-----ceeeeeccCc---ccccceecccC-----cceeeccceeccccCcce
Confidence 345889999999877766 566666665 6777877554 22221211111 11111111112 356679
Q ss_pred EEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEE
Q 013827 147 AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVK 226 (436)
Q Consensus 147 ~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 226 (436)
++|+.|++|.+|.....+... .+.+|...|.+++...++ .++|||.|.+++
T Consensus 75 ~~g~~D~~i~v~~~~~~~P~~---------------------------~LkgH~snVC~ls~~~~~--~~iSgSWD~Tak 125 (745)
T KOG0301|consen 75 VVGGMDTTIIVFKLSQAEPLY---------------------------TLKGHKSNVCSLSIGEDG--TLISGSWDSTAK 125 (745)
T ss_pred EeecccceEEEEecCCCCchh---------------------------hhhccccceeeeecCCcC--ceEecccccceE
Confidence 999999999999997655444 377999999999988885 389999999999
Q ss_pred EEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEe
Q 013827 227 IWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL 306 (436)
Q Consensus 227 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 306 (436)
+|-+. ++...+++|+..|+++...|.+ .+++|+.|.+|++|.- ++....+.+|...|+.+++-+++ -+++++
T Consensus 126 vW~~~--~l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~--~flScs 197 (745)
T KOG0301|consen 126 VWRIG--ELVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS--HFLSCS 197 (745)
T ss_pred Eecch--hhhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC--CeEeec
Confidence 99764 5666799999999999999987 6899999999999986 55666678899999999999964 599999
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcE
Q 013827 307 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAV 386 (436)
Q Consensus 307 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 386 (436)
.||.|++|++ ++ ..+..+.+|+..+.++...+++ ..++++++|++++||+.. + +...+....-.|
T Consensus 198 NDg~Ir~w~~-~g---------e~l~~~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~--e--~~q~I~lPttsi 262 (745)
T KOG0301|consen 198 NDGSIRLWDL-DG---------EVLLEMHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKD--E--CVQVITLPTTSI 262 (745)
T ss_pred CCceEEEEec-cC---------ceeeeeeccceEEEEEEecCCC-CeEEEecCCceEEEeecC--c--eEEEEecCccce
Confidence 9999999999 34 6689999999999999977766 799999999999999987 3 344444334479
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 387 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 387 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
+++.+-++|. +++|++||.|+||.....
T Consensus 263 Wsa~~L~NgD--Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 263 WSAKVLLNGD--IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred EEEEEeeCCC--EEEeccCceEEEEEeccc
Confidence 9999999998 778999999999998743
No 99
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.6e-27 Score=205.44 Aligned_cols=240 Identities=20% Similarity=0.244 Sum_probs=197.1
Q ss_pred CCCCcE-EEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 140 REKGNF-MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 140 s~~~~~-l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
+|...+ +|+.+ .-.+.||+..+..... .+....+.|.++.|..|| .+||+
T Consensus 35 sp~~P~d~aVt~-S~rvqly~~~~~~~~k---------------------------~~srFk~~v~s~~fR~DG-~Llaa 85 (487)
T KOG0310|consen 35 SPKHPYDFAVTS-SVRVQLYSSVTRSVRK---------------------------TFSRFKDVVYSVDFRSDG-RLLAA 85 (487)
T ss_pred CCCCCCceEEec-ccEEEEEecchhhhhh---------------------------hHHhhccceeEEEeecCC-eEEEc
Confidence 664333 44333 4689999986543332 233567889999999998 49999
Q ss_pred EeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCC
Q 013827 219 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA 298 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~ 298 (436)
|...|.|+|+|+.+...++.+.+|+.++..+.|+|.+...+++|+.|+.+++||+.+........+|...|.+.+|+|..
T Consensus 86 GD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~ 165 (487)
T KOG0310|consen 86 GDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPAN 165 (487)
T ss_pred cCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCC
Confidence 99999999999777667788899999999999999988899999999999999999888655677899999999999988
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEe
Q 013827 299 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 378 (436)
Q Consensus 299 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 378 (436)
+.++++|+.||.|++||++... ..+.+ -.|..+|..+.+-|.| .++++++. +.|++||+-++.. .+..
T Consensus 166 ~hivvtGsYDg~vrl~DtR~~~--------~~v~e-lnhg~pVe~vl~lpsg-s~iasAgG-n~vkVWDl~~G~q-ll~~ 233 (487)
T KOG0310|consen 166 DHIVVTGSYDGKVRLWDTRSLT--------SRVVE-LNHGCPVESVLALPSG-SLIASAGG-NSVKVWDLTTGGQ-LLTS 233 (487)
T ss_pred CeEEEecCCCceEEEEEeccCC--------ceeEE-ecCCCceeeEEEcCCC-CEEEEcCC-CeEEEEEecCCce-ehhh
Confidence 8899999999999999999872 22333 4599999999999988 78887764 5799999996653 3334
Q ss_pred eCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 379 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 379 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
...|...|+|+++..++. .|++++-|+.+++||+.+.+.+..
T Consensus 234 ~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t~~Kvv~s 275 (487)
T KOG0310|consen 234 MFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTTNYKVVHS 275 (487)
T ss_pred hhcccceEEEEEeecCCc-eEeecccccceEEEEccceEEEEe
Confidence 445888999999999997 699999999999999887776654
No 100
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=6.2e-28 Score=191.98 Aligned_cols=244 Identities=22% Similarity=0.357 Sum_probs=199.4
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
++|.+.|.+..++.+-...|++..+ +.-.+|+.-.+.+...+.|... +-.+ +|+.|.++|++|
T Consensus 56 eghkgavw~~~l~~na~~aasaaad-----ftakvw~a~tgdelhsf~hkhi-----vk~~-------af~~ds~~lltg 118 (334)
T KOG0278|consen 56 EGHKGAVWSATLNKNATRAASAAAD-----FTAKVWDAVTGDELHSFEHKHI-----VKAV-------AFSQDSNYLLTG 118 (334)
T ss_pred eccCcceeeeecCchhhhhhhhccc-----chhhhhhhhhhhhhhhhhhhhe-----eeeE-------Eecccchhhhcc
Confidence 4688999999999888888888766 3666777666544444433322 1223 448999999999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+.+..+||||++..+... ..+.+|.+.|..+.|.... +.+++.+.|++||+||
T Consensus 119 g~ekllrvfdln~p~App--------------------------~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD 171 (334)
T KOG0278|consen 119 GQEKLLRVFDLNRPKAPP--------------------------KEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWD 171 (334)
T ss_pred chHHHhhhhhccCCCCCc--------------------------hhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEE
Confidence 999999999998544332 2256899999999999874 5788889999999999
Q ss_pred CCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCC
Q 013827 230 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG 309 (436)
Q Consensus 230 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg 309 (436)
.++++.++++. ...+|+++.++++| . +++....+.|.+||..+...+. ....+..|.+...+|+. ..+++|++|.
T Consensus 172 ~rTgt~v~sL~-~~s~VtSlEvs~dG-~-ilTia~gssV~Fwdaksf~~lK-s~k~P~nV~SASL~P~k-~~fVaGged~ 246 (334)
T KOG0278|consen 172 HRTGTEVQSLE-FNSPVTSLEVSQDG-R-ILTIAYGSSVKFWDAKSFGLLK-SYKMPCNVESASLHPKK-EFFVAGGEDF 246 (334)
T ss_pred eccCcEEEEEe-cCCCCcceeeccCC-C-EEEEecCceeEEecccccccee-eccCccccccccccCCC-ceEEecCcce
Confidence 99999999997 67899999999999 5 5666778899999999877665 55667889999999976 7899999999
Q ss_pred cEEEEeCCCCCCCCCCCCCcccEEE-eccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 013827 310 TIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 310 ~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
.++.||..++ ..+..+ ++|.++|.|+.|+|+| .+.++|+.||+|++|.+...+
T Consensus 247 ~~~kfDy~Tg---------eEi~~~nkgh~gpVhcVrFSPdG-E~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 247 KVYKFDYNTG---------EEIGSYNKGHFGPVHCVRFSPDG-ELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEEEEeccCC---------ceeeecccCCCCceEEEEECCCC-ceeeccCCCceEEEEEecCCC
Confidence 9999999998 334443 8999999999999999 899999999999999987665
No 101
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5e-27 Score=193.13 Aligned_cols=319 Identities=18% Similarity=0.249 Sum_probs=245.8
Q ss_pred CCCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEE
Q 013827 68 KDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA 147 (436)
Q Consensus 68 ~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 147 (436)
+-.+|.+.|..++-....+++.+++.+. .-.+|..+.+.+...|..|...+ .|+.+ ++.+.+++
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADh-----TA~iWs~Esg~CL~~Y~GH~GSV----Nsikf-------h~s~~L~l 206 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADH-----TARIWSLESGACLATYTGHTGSV----NSIKF-------HNSGLLLL 206 (481)
T ss_pred hhcccccceeeehhhcCCcceeeccccc-----ceeEEeeccccceeeecccccce----eeEEe-------ccccceEE
Confidence 4468999999999999999888888876 67778777777777888886555 34444 89999999
Q ss_pred EeeCCCcEEEEeCC----CCCCCcceeeecccchh--hhh-------hcccCCCcccccccccCcccceeEEEecCCCCc
Q 013827 148 VGSMEPAIEIWDLD----VIDEVQPHVILGGIDEE--KKK-------KKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN 214 (436)
Q Consensus 148 ~g~~dg~i~vw~~~----~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 214 (436)
+++.|++..||... ..+...+....+..+.+ .+. .+.....-..+...+.+|...|.+..|...| +
T Consensus 207 TaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~ 285 (481)
T KOG0300|consen 207 TASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-Q 285 (481)
T ss_pred EccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-c
Confidence 99999999999732 22211111111111100 000 0111112345566788999999999999886 5
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCC-ccceEeeeCCeeEEE
Q 013827 215 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLA 293 (436)
Q Consensus 215 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~i~~~~ 293 (436)
.+++++.|.+..+||+++++.+..+.+|....+-++-+|.. +++++++.|.+.++||++..-. ...+.+|...++++.
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~v 364 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVV 364 (481)
T ss_pred eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhhcceeeeecccccceeEEE
Confidence 89999999999999999999999999999999999999998 8999999999999999995433 345668999999999
Q ss_pred eCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc
Q 013827 294 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 373 (436)
Q Consensus 294 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~ 373 (436)
|..+. .+++|++|.+|++||+++.. .++.++. -..+++.++.+..+ ..++.--.+..|++||++....
T Consensus 365 F~~dd--~vVSgSDDrTvKvWdLrNMR--------splATIR-tdS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~Rl 432 (481)
T KOG0300|consen 365 FNTDD--RVVSGSDDRTVKVWDLRNMR--------SPLATIR-TDSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNRL 432 (481)
T ss_pred EecCC--ceeecCCCceEEEeeecccc--------Ccceeee-cCCccceeEeecCC-ceEEeccCCceEEEEecCCCcc
Confidence 99864 69999999999999999873 4555555 46778999999865 6888888889999999988664
Q ss_pred eeE--EeeCCCCCcEEEEEEcCCCCc-EEEEEeCCCcEEEEeCCCC
Q 013827 374 SCI--ASRNPKAGAVFSVAFSEDSPF-VLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 374 ~~~--~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~ 416 (436)
..+ ....+|..-|.|++|..+-.. -|.+++.|..+.=|++...
T Consensus 433 aRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 433 ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 222 245678888999999865321 1678999999999998754
No 102
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.8e-26 Score=198.80 Aligned_cols=254 Identities=19% Similarity=0.231 Sum_probs=207.5
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
+|+.++..+++.+|+|.=|++.++.....+.... .. .+.+.........+|...|.+++.++|| .+||+|
T Consensus 151 s~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~------ev---~k~~~~~~k~~r~~h~keil~~avS~Dg-kylatg 220 (479)
T KOG0299|consen 151 SPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD------EV---LKSHGNPLKESRKGHVKEILTLAVSSDG-KYLATG 220 (479)
T ss_pred eccccceeecCCCcceeeeehhcCcccccccccc------hh---hhhccCCCCcccccccceeEEEEEcCCC-cEEEec
Confidence 8999999999999999999999877553211100 00 0001111111114899999999999997 599999
Q ss_pred eCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCC
Q 013827 220 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 299 (436)
Q Consensus 220 ~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 299 (436)
+.|..|.||+.++.+.++.+.+|.+.|.+++|-... ..+++++.|+.+++|++.....+..+++|++.|..+....-+
T Consensus 221 g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~re- 298 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRE- 298 (479)
T ss_pred CCCceEEEecCcccchhhcccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhccc-
Confidence 999999999999999999999999999999998766 789999999999999999999999999999999999887654
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEee
Q 013827 300 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 379 (436)
Q Consensus 300 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 379 (436)
..+-+|+.|+++++|++... ....+.++.+.+-|++|-.+ ..+++|+.+|.|.+|++...++..+...
T Consensus 299 R~vtVGgrDrT~rlwKi~ee----------sqlifrg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 299 RCVTVGGRDRTVRLWKIPEE----------SQLIFRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred ceEEeccccceeEEEecccc----------ceeeeeCCCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEeec
Confidence 67777889999999999543 34567788999999999875 5899999999999999998887555443
Q ss_pred CCC----------CCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 380 NPK----------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 380 ~~~----------~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
..+ ...|++++..|... ++++|+.+|.|++|.+..+-.
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred cccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCCcc
Confidence 211 12689999999888 799999999999999998843
No 103
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.1e-25 Score=183.41 Aligned_cols=229 Identities=19% Similarity=0.287 Sum_probs=184.2
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCC-cEEEEEe
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR-NILASAS 220 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~ 220 (436)
++.++|+|+.|-+|+|||+........ +-.|.+.|+++.|.++-. ..|++|+
T Consensus 52 s~~~~aSGssDetI~IYDm~k~~qlg~---------------------------ll~HagsitaL~F~~~~S~shLlS~s 104 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKRKQLGI---------------------------LLSHAGSITALKFYPPLSKSHLLSGS 104 (362)
T ss_pred cceeEeccCCCCcEEEEeccchhhhcc---------------------------eeccccceEEEEecCCcchhheeeec
Confidence 799999999999999999975444332 446999999999998731 2799999
Q ss_pred CCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCc
Q 013827 221 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 300 (436)
Q Consensus 221 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 300 (436)
.||.|.+|+....+++..+++|...|+.++.+|.+ .+.++.+.|+.+++||+-.++... ........+.+.|+|.|+
T Consensus 105 dDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~-v~~L~~~at~v~w~~~Gd- 181 (362)
T KOG0294|consen 105 DDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAF-VLNLKNKATLVSWSPQGD- 181 (362)
T ss_pred CCCcEEEEEcCCeEEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccce-eeccCCcceeeEEcCCCC-
Confidence 99999999999999999999999999999999999 899999999999999998776543 344455566699999986
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeC
Q 013827 301 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 380 (436)
Q Consensus 301 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 380 (436)
.++.+..+ .|-+|.+.+.. ....+ .....+.++.|.. +..|++|+.|+.|.+||..+.. +...+.
T Consensus 182 ~F~v~~~~-~i~i~q~d~A~---------v~~~i-~~~~r~l~~~~l~--~~~L~vG~d~~~i~~~D~ds~~--~~~~~~ 246 (362)
T KOG0294|consen 182 HFVVSGRN-KIDIYQLDNAS---------VFREI-ENPKRILCATFLD--GSELLVGGDNEWISLKDTDSDT--PLTEFL 246 (362)
T ss_pred EEEEEecc-EEEEEecccHh---------Hhhhh-hccccceeeeecC--CceEEEecCCceEEEeccCCCc--cceeee
Confidence 45555444 58889887752 12222 2224566777665 3689999999999999999865 566788
Q ss_pred CCCCcEEEEEE--cCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 381 PKAGAVFSVAF--SEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 381 ~~~~~v~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
+|...|.++.+ .|++. +|+++++||.|+|||+...
T Consensus 247 AH~~RVK~i~~~~~~~~~-~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 247 AHENRVKDIASYTNPEHE-YLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cchhheeeeEEEecCCce-EEEEeccCceEEEEEcccc
Confidence 99999999984 34565 6999999999999999876
No 104
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.2e-27 Score=203.30 Aligned_cols=240 Identities=20% Similarity=0.285 Sum_probs=197.5
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
-++...|++|+.|..|++|++...+ ......+.|-.+.|+++.|.+++ .+++++
T Consensus 184 l~~sdtlatgg~Dr~Ik~W~v~~~k-------------------------~~~~~tLaGs~g~it~~d~d~~~-~~~iAa 237 (459)
T KOG0288|consen 184 LRNSDTLATGGSDRIIKLWNVLGEK-------------------------SELISTLAGSLGNITSIDFDSDN-KHVIAA 237 (459)
T ss_pred ccCcchhhhcchhhhhhhhhcccch-------------------------hhhhhhhhccCCCcceeeecCCC-ceEEee
Confidence 5677889999999999999987533 23344466788899999999996 588899
Q ss_pred eCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCC
Q 013827 220 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 299 (436)
Q Consensus 220 ~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 299 (436)
+.|+.+++|++...+...++.+|++.|+++.|.... ..+++|+.|.+|++||+....+..... ....+..+...+
T Consensus 238 s~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~~--- 312 (459)
T KOG0288|consen 238 SNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCSI--- 312 (459)
T ss_pred cCCCceeeeeccchhhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheecccc-ccccccceEecc---
Confidence 999999999999999999999999999999998877 559999999999999999866655322 344556666553
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEee
Q 013827 300 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 379 (436)
Q Consensus 300 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 379 (436)
..+++|..|++|++||+++. .+......+. .|+++..++++ ..|++++.|.++.+.|+++.+....+.-
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~---------~~~~sv~~gg-~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI~~~~sA 381 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSA---------DKTRSVPLGG-RVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEIRQTFSA 381 (459)
T ss_pred eeeeecccccceEEEeccCC---------ceeeEeecCc-ceeeEeeccCC-eEEeeecCCCceeeeecccccEEEEeec
Confidence 57899999999999999987 5566666555 89999999998 7888889999999999999875444433
Q ss_pred CCC--CCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 380 NPK--AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 380 ~~~--~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
.+. ....+.+.|||+++| +++|+.||.|+||++.++++....
T Consensus 382 ~g~k~asDwtrvvfSpd~~Y-vaAGS~dgsv~iW~v~tgKlE~~l 425 (459)
T KOG0288|consen 382 EGFKCASDWTRVVFSPDGSY-VAAGSADGSVYIWSVFTGKLEKVL 425 (459)
T ss_pred cccccccccceeEECCCCce-eeeccCCCcEEEEEccCceEEEEe
Confidence 322 234889999999996 888999999999999999876554
No 105
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=2.6e-26 Score=193.03 Aligned_cols=251 Identities=21% Similarity=0.341 Sum_probs=197.9
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 221 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 221 (436)
+..+.|+-+..|.|+||++...-....... ........+.++++.+|...=++|+|||-....|++|..
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~-----------~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc 232 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPG-----------LEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDC 232 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCcc-----------ccccccccCceEEecccCccceeeecccccccccccCcc
Confidence 566778888999999999864322111000 011225577888899999999999999954446889988
Q ss_pred CCcEEEEeCCCCeEE---EEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc--cceEeeeCCeeEEEeCC
Q 013827 222 DKQVKIWDVAAGKCN---LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS--GFKWAVAADVESLAWDP 296 (436)
Q Consensus 222 dg~v~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~--~~~~~~~~~i~~~~~~~ 296 (436)
-+.|++|...++.-. ..+.+|+..|-.++|+|.....|++|+.||+|+|||+|..... .....|.+.|+.+.|+.
T Consensus 233 ~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr 312 (440)
T KOG0302|consen 233 VKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR 312 (440)
T ss_pred ccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC
Confidence 899999999887542 3456799999999999998899999999999999999987433 23457889999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC----
Q 013827 297 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ---- 372 (436)
Q Consensus 297 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~---- 372 (436)
.-+ +|++|++||+++|||+|..+. .+++..++.|..+|+++.|+|.....|++++.|.+|.+||+....
T Consensus 313 ~~~-lLasG~DdGt~~iwDLR~~~~------~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee 385 (440)
T KOG0302|consen 313 REP-LLASGGDDGTLSIWDLRQFKS------GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE 385 (440)
T ss_pred Ccc-eeeecCCCceEEEEEhhhccC------CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence 765 999999999999999998753 377899999999999999999887899999999999999985421
Q ss_pred -------------ceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 013827 373 -------------PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 373 -------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 412 (436)
++.++...+ ...+..+.|++.-+.++++.+.|| +.||.
T Consensus 386 ~~~~a~~~L~dlPpQLLFVHqG-Qke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 386 IDQEAAEGLQDLPPQLLFVHQG-QKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred hccccccchhcCCceeEEEecc-hhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 112333323 336888999998877888888888 55554
No 106
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.7e-26 Score=199.21 Aligned_cols=280 Identities=17% Similarity=0.228 Sum_probs=214.5
Q ss_pred ceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCC
Q 013827 86 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDE 165 (436)
Q Consensus 86 ~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~ 165 (436)
.+++++..... .+.+|+.... ........+|....|++- +|+|.+|+.|+..|.|++|.+.++..
T Consensus 51 ~yllsaq~~rp----~l~vw~i~k~----~~~~q~~v~Pg~v~al~s-------~n~G~~l~ag~i~g~lYlWelssG~L 115 (476)
T KOG0646|consen 51 EYLLSAQLKRP----LLHVWEILKK----DQVVQYIVLPGPVHALAS-------SNLGYFLLAGTISGNLYLWELSSGIL 115 (476)
T ss_pred hheeeecccCc----cccccccCch----hhhhhhcccccceeeeec-------CCCceEEEeecccCcEEEEEeccccH
Confidence 56777765542 4444444332 112255677777788876 89999999999999999999998777
Q ss_pred CcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCC---------CCeEE
Q 013827 166 VQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA---------AGKCN 236 (436)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~---------~~~~~ 236 (436)
+.. +.+|-..|+|+.|+.|| .+|+||+.||.|.+|.+. +-++.
T Consensus 116 L~v---------------------------~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 116 LNV---------------------------LSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred HHH---------------------------HHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 654 45799999999999997 599999999999999874 23567
Q ss_pred EEEcccCCCeEEEEEcCCC-CCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEe
Q 013827 237 LTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD 315 (436)
Q Consensus 237 ~~~~~~~~~v~~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d 315 (436)
..+..|.-+|+++...+.| ..++++++.|.++++||+..+.... ....+..+.+++.+|.+ ..+++|+.+|.|.+.+
T Consensus 168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl-ti~fp~si~av~lDpae-~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL-TITFPSSIKAVALDPAE-RVVYIGTEEGKIFQNL 245 (476)
T ss_pred eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE-EEecCCcceeEEEcccc-cEEEecCCcceEEeee
Confidence 8889999999999988763 3589999999999999999886654 55678889999999965 7999999999999998
Q ss_pred CCCCCCCCC-------CCCCcccEEEeccCC--CeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcE
Q 013827 316 IRTAKSDPD-------STSQQSSFTLHAHDK--AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAV 386 (436)
Q Consensus 316 ~~~~~~~~~-------~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 386 (436)
+........ .........+.+|.. .|+|++++-|| .+|++|+.||.|+|||+.+.+ ++.+.....++|
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q--~iRtl~~~kgpV 322 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQ--CIRTLQTSKGPV 322 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHH--HHHHHhhhcccc
Confidence 876542111 112344567788887 99999999999 999999999999999999887 444444457799
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 013827 387 FSVAFSEDSPFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 387 ~~~~~~~~~~~~l~s~~~dg~i~iwd~ 413 (436)
+.+.+.|-.+..+..-...-.+-.|++
T Consensus 323 tnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 323 TNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred ceeEeeccccceecccccCccCCchHh
Confidence 999997755433332333333444443
No 107
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=7.4e-26 Score=185.68 Aligned_cols=242 Identities=17% Similarity=0.243 Sum_probs=188.4
Q ss_pred CCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEE
Q 013827 138 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 217 (436)
Q Consensus 138 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 217 (436)
.|+|.++.|++++.||++++|++...+.... -.|..++.+++|.++ ..++
T Consensus 20 ~f~~~~~~LLvssWDgslrlYdv~~~~l~~~----------------------------~~~~~plL~c~F~d~--~~~~ 69 (323)
T KOG1036|consen 20 KFSPSSSDLLVSSWDGSLRLYDVPANSLKLK----------------------------FKHGAPLLDCAFADE--STIV 69 (323)
T ss_pred EEcCcCCcEEEEeccCcEEEEeccchhhhhh----------------------------eecCCceeeeeccCC--ceEE
Confidence 3478888999999999999999986543332 258999999999987 4799
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCC
Q 013827 218 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 297 (436)
Q Consensus 218 s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~ 297 (436)
+|+.||.|+.+|+.++... .+..|..+|.++.+++.. ..+++|+.|++|++||.+...... .......|.++....
T Consensus 70 ~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~-~~d~~kkVy~~~v~g- 145 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVG-TFDQGKKVYCMDVSG- 145 (323)
T ss_pred EeccCceEEEEEecCCcce-eeccCCCceEEEEeeccC-CeEEEcccCccEEEEecccccccc-ccccCceEEEEeccC-
Confidence 9999999999999988754 455699999999999877 789999999999999999744433 333445788887764
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc--ee
Q 013827 298 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP--SC 375 (436)
Q Consensus 298 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~--~~ 375 (436)
+.|++|+.+..+.+||+++..... ...-..-.-.+.++++.|++ .-.++++-||+|.+=.+...+. ..
T Consensus 146 --~~LvVg~~~r~v~iyDLRn~~~~~-------q~reS~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 146 --NRLVVGTSDRKVLIYDLRNLDEPF-------QRRESSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred --CEEEEeecCceEEEEEcccccchh-------hhccccceeEEEEEEEecCC-CceEEEeecceEEEEccCCchHHhhh
Confidence 679999999999999999874322 11122334568899999977 6677889999998866655411 12
Q ss_pred EEeeCCCC---------CcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccccc
Q 013827 376 IASRNPKA---------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 424 (436)
Q Consensus 376 ~~~~~~~~---------~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (436)
.+.+..|. -+|++|+|+|-.. .|+||+.||.|.+||+.+.+.+.+.-.
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~~rKrl~q~~~ 272 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLFNRKRLKQLAK 272 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccCcchhhhhhccC
Confidence 34444443 2799999999877 599999999999999999888765433
No 108
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=8.7e-26 Score=181.50 Aligned_cols=221 Identities=18% Similarity=0.301 Sum_probs=192.5
Q ss_pred ccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC
Q 013827 196 KGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 275 (436)
Q Consensus 196 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 275 (436)
+.+|..+++.+.++.+|. +|++|+.|.+..||-...|+.+.++.+|++.|+++..+.+. ..+++|+.|.++++||+.+
T Consensus 6 l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVET 83 (327)
T ss_pred cccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcCC
Confidence 668999999999999984 99999999999999988999999999999999999999988 8999999999999999999
Q ss_pred CCCccceEeeeCCeeEEEeCCCCCcEEEEEe-----CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC
Q 013827 276 STHSGFKWAVAADVESLAWDPHAEHSFVVSL-----EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 350 (436)
Q Consensus 276 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 350 (436)
++... ....+.+|..+.|+++| ++++.+. ..+.|.++|++...... ....+...+..+...++.+.|.|.+
T Consensus 84 Gk~la-~~k~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~--~s~ep~~kI~t~~skit~a~Wg~l~ 159 (327)
T KOG0643|consen 84 GKQLA-TWKTNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDI--DSEEPYLKIPTPDSKITSALWGPLG 159 (327)
T ss_pred CcEEE-EeecCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhh--cccCceEEecCCccceeeeeecccC
Confidence 98876 67788999999999987 4555554 35789999999654221 1236678888899999999999998
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccC
Q 013827 351 PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 425 (436)
Q Consensus 351 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (436)
.+|++|..||.|.+||+++++. .+.....|...|+.|+++||..+ +++++.|.+-++||+.+-+.+.+....
T Consensus 160 -~~ii~Ghe~G~is~~da~~g~~-~v~s~~~h~~~Ind~q~s~d~T~-FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 160 -ETIIAGHEDGSISIYDARTGKE-LVDSDEEHSSKINDLQFSRDRTY-FITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred -CEEEEecCCCcEEEEEcccCce-eeechhhhccccccccccCCcce-EEecccCccceeeeccceeeEEEeeec
Confidence 8999999999999999999863 45556778889999999999995 999999999999999998887765443
No 109
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=3.4e-26 Score=199.07 Aligned_cols=287 Identities=17% Similarity=0.301 Sum_probs=226.9
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEee
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 150 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 150 (436)
.|.+-|.++.+|...+.+.+|+.. -|.+|+........-..+-+...+. .++ ..+...|||+.|++|+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGkg------cVKVWdis~pg~k~PvsqLdcl~rd-----nyi-RSckL~pdgrtLivGG 484 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGKG------CVKVWDISQPGNKSPVSQLDCLNRD-----NYI-RSCKLLPDGRTLIVGG 484 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCCC------eEEEeeccCCCCCCccccccccCcc-----cce-eeeEecCCCceEEecc
Confidence 577888999999999999888654 4555555443211111111111110 010 1122379999999999
Q ss_pred CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 013827 151 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 230 (436)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~ 230 (436)
.-.++.|||+..... ++...+..-.-.+.+++.+||. ++.+++..||.|.|||+
T Consensus 485 eastlsiWDLAapTp-------------------------rikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDL 538 (705)
T KOG0639|consen 485 EASTLSIWDLAAPTP-------------------------RIKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDL 538 (705)
T ss_pred ccceeeeeeccCCCc-------------------------chhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEc
Confidence 999999999975332 2223344445678899999994 79999999999999999
Q ss_pred CCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCc
Q 013827 231 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT 310 (436)
Q Consensus 231 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~ 310 (436)
.....++.|++|.+.+.||..+++| ..|-+|+-|++|+-||+++..... .....+.|.++..+|++ .++++|-.++.
T Consensus 539 hnq~~VrqfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlq-qhdF~SQIfSLg~cP~~-dWlavGMens~ 615 (705)
T KOG0639|consen 539 HNQTLVRQFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQ-QHDFSSQIFSLGYCPTG-DWLAVGMENSN 615 (705)
T ss_pred ccceeeecccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhh-hhhhhhhheecccCCCc-cceeeecccCc
Confidence 9999999999999999999999999 899999999999999999887765 45567889999999988 58999999999
Q ss_pred EEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEE
Q 013827 311 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA 390 (436)
Q Consensus 311 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 390 (436)
+.+...... ..+.+..|..-|.++.|.+.| +++++.+.|+.+..|.+.-+. .++... ..++|.++.
T Consensus 616 vevlh~skp----------~kyqlhlheScVLSlKFa~cG-kwfvStGkDnlLnawrtPyGa--siFqsk-E~SsVlsCD 681 (705)
T KOG0639|consen 616 VEVLHTSKP----------EKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGA--SIFQSK-ESSSVLSCD 681 (705)
T ss_pred EEEEecCCc----------cceeecccccEEEEEEecccC-ceeeecCchhhhhhccCcccc--ceeecc-ccCcceeee
Confidence 988887654 256788899999999999999 999999999999999998876 344444 356899999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeC
Q 013827 391 FSEDSPFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 391 ~~~~~~~~l~s~~~dg~i~iwd~ 413 (436)
.+.|.+| ++||+.|....||.+
T Consensus 682 IS~ddky-IVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 682 ISFDDKY-IVTGSGDKKATVYEV 703 (705)
T ss_pred eccCceE-EEecCCCcceEEEEE
Confidence 9999995 999999998888875
No 110
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.4e-27 Score=224.41 Aligned_cols=301 Identities=23% Similarity=0.359 Sum_probs=228.4
Q ss_pred ccceeccCCc-eEEEEEecCC-------cceeEEEEEecCCCCC-CceeeecccccCcCcceeecccCCCCCCCCCc---
Q 013827 77 EDMTINPNDA-VIVCARNEDD-------VSHLEVYILEESDGGD-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN--- 144 (436)
Q Consensus 77 ~~~~~sp~~~-~l~~~~~~~~-------~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--- 144 (436)
-.++|+|++. ++++|...+. -..++++-++...... ......+ ....--..++|. +.+.
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~--~s~~rF~kL~W~-------~~g~~~~ 80 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL--QSSNRFNKLAWG-------SYGSHSH 80 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc--cccccceeeeec-------ccCCCcc
Confidence 4579999997 5555543221 1134455444433310 0111111 111122457773 3333
Q ss_pred -EEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCC
Q 013827 145 -FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK 223 (436)
Q Consensus 145 -~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 223 (436)
+||.|..||.|.+||.... ........+..+..|.+.|..+.|++..+++||+|+.||
T Consensus 81 GlIaGG~edG~I~ly~p~~~---------------------~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASI---------------------IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred ceeeccccCCceEEecchhh---------------------ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCC
Confidence 5889999999999998742 112334556667789999999999999888999999999
Q ss_pred cEEEEeCCCCeEEEEE--cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeee--CCeeEEEeCCCCC
Q 013827 224 QVKIWDVAAGKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA--ADVESLAWDPHAE 299 (436)
Q Consensus 224 ~v~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~--~~i~~~~~~~~~~ 299 (436)
.|.|||+...+..... ....+.|.+++|+..-.++|++++.+|.+.|||+|..+.+..+..+. ..+..++|+|+..
T Consensus 140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA 219 (1049)
T ss_pred cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc
Confidence 9999999875544333 12467899999998877899999999999999999987665444433 3478999999988
Q ss_pred cEEEEEeCCC---cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeE
Q 013827 300 HSFVVSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 376 (436)
Q Consensus 300 ~~~~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 376 (436)
..++++++|. .|.+||+|.. ..++..+.+|...|.++.|++.++++|++++.|++|.+|+.++++ .+
T Consensus 220 Tql~~As~dd~~PviqlWDlR~a--------ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE--vl 289 (1049)
T KOG0307|consen 220 TQLLVASGDDSAPVIQLWDLRFA--------SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE--VL 289 (1049)
T ss_pred eeeeeecCCCCCceeEeeccccc--------CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce--Ee
Confidence 8888887654 5999999987 366788899999999999999888999999999999999999988 56
Q ss_pred EeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 377 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 377 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
..+......+..+.|.|....+++.++-||.|.||.+....
T Consensus 290 ~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 290 GELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 67777777899999999998789999999999999998765
No 111
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=5.1e-24 Score=185.66 Aligned_cols=354 Identities=13% Similarity=0.151 Sum_probs=242.3
Q ss_pred ccceeeeccCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEEecC---Ccce
Q 013827 23 CFRCHKISNASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNED---DVSH 99 (436)
Q Consensus 23 ~~~~~~~~~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~---~~~~ 99 (436)
..|-+-+++.|-.+.+|-+...++..-..++.+.-+.+++... --.+|.++|.+|+++||.-.+++|...+ ....
T Consensus 56 LewvygYRG~dcR~Nly~lptgE~vyfvA~V~Vl~n~ee~~Qr--~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~ 133 (626)
T KOG2106|consen 56 LEWVYGYRGVDCRNNLYLLPTGELVYFVAAVGVLYNWEERSQR--HYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQ 133 (626)
T ss_pred eEEEEeecceeeeceeEEccCccEEEEeccEEEEEeehhhhcc--cccCCCCceEEEeecCCceeeccCcccccCCCcCC
Confidence 4588888899999999999888877666654333232322211 1237899999999999999888775544 1222
Q ss_pred eEEEEEecCCCCCCceeeecccccCcCcceeeccc---------------------------------------CCCCCC
Q 013827 100 LEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLD---------------------------------------CPLKDR 140 (436)
Q Consensus 100 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~s 140 (436)
-.+.+|+...-.....+. ....-+.|++|.. +...|+
T Consensus 134 phvriWdsv~L~TL~V~g----~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FH 209 (626)
T KOG2106|consen 134 PHVRIWDSVTLSTLHVIG----FFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFH 209 (626)
T ss_pred Ceeeecccccceeeeeec----cccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEec
Confidence 345555532211111110 0111112222210 122345
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEe
Q 013827 141 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 220 (436)
Q Consensus 141 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 220 (436)
|.+.-|......|.+.+|+...+.......++.. .....|.|++|.++|. +++|.
T Consensus 210 Ptd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek-----------------------~ekk~Vl~v~F~engd--viTgD 264 (626)
T KOG2106|consen 210 PTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEK-----------------------REKKFVLCVTFLENGD--VITGD 264 (626)
T ss_pred cCCCcEEEEeCCceEEEEEccCCceEEEeecccc-----------------------ccceEEEEEEEcCCCC--EEeec
Confidence 6544444444467777777765554443322211 1226799999999974 88999
Q ss_pred CCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCC----------------------
Q 013827 221 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH---------------------- 278 (436)
Q Consensus 221 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------------------- 278 (436)
.+|.|.||+..+.+..+....|.+.|.++....+| . |++|+.|..|..||-.-.+.
T Consensus 265 S~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G-t-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di 342 (626)
T KOG2106|consen 265 SGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG-T-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDI 342 (626)
T ss_pred CCceEEEEeCCCceEEeEeeecCCceEEEEEecCc-c-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcE
Confidence 99999999998888777777999999999999998 4 66799999999998321110
Q ss_pred ------------------ccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCC
Q 013827 279 ------------------SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA 340 (436)
Q Consensus 279 ------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (436)
.....+|......++.+|+. .++++++.|+.+++|+ .. ++..+. .-..+
T Consensus 343 ~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~--~~---------k~~wt~-~~~d~ 409 (626)
T KOG2106|consen 343 LVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWN--DH---------KLEWTK-IIEDP 409 (626)
T ss_pred EEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hheeeccCcceEEEcc--CC---------ceeEEE-EecCc
Confidence 01122445567788888865 6899999999999999 22 333332 34577
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccc
Q 013827 341 VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 420 (436)
Q Consensus 341 v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (436)
..++.|+|.| .+|.|+..|...+.|.++... +..... ..++++++|+|+|.+ ||.|+.|+.|+||.+..+....
T Consensus 410 ~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~l--v~~~~d-~~~ls~v~ysp~G~~-lAvgs~d~~iyiy~Vs~~g~~y 483 (626)
T KOG2106|consen 410 AECADFHPSG--VVAVGTATGRWFVLDTETQDL--VTIHTD-NEQLSVVRYSPDGAF-LAVGSHDNHIYIYRVSANGRKY 483 (626)
T ss_pred eeEeeccCcc--eEEEeeccceEEEEeccccee--EEEEec-CCceEEEEEcCCCCE-EEEecCCCeEEEEEECCCCcEE
Confidence 8999999986 899999999999999998663 333333 679999999999995 9999999999999999887776
Q ss_pred ccccCCCC
Q 013827 421 NRFSKYSK 428 (436)
Q Consensus 421 ~~~~~~~~ 428 (436)
.......+
T Consensus 484 ~r~~k~~g 491 (626)
T KOG2106|consen 484 SRVGKCSG 491 (626)
T ss_pred EEeeeecC
Confidence 66666554
No 112
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1e-25 Score=201.93 Aligned_cols=288 Identities=17% Similarity=0.295 Sum_probs=218.5
Q ss_pred cceec-cCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEE
Q 013827 78 DMTIN-PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE 156 (436)
Q Consensus 78 ~~~~s-p~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 156 (436)
.+..+ |.+++|.+|+.|+ .|..|+........- +.-+..+....+|. ..+..-.+++-|++++.|-+|+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg-----~i~~W~~~~d~~~~s----~~~~asme~HsDWV-NDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDG-----IIRLWSVTQDSNEPS----TPYIASMEHHSDWV-NDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccCCCCceEEecCCCc-----eEEEeccccccCCcc----cchhhhhhhhHhHH-hhHHhhcCCCceEEecCCceEE
Confidence 45555 5677899999887 666665544311000 00111222234443 1222234688899999999999
Q ss_pred EEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEe-cCCCCcEEEEEeCCCcEEEEeCCCCe-
Q 013827 157 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-NKEFRNILASASADKQVKIWDVAAGK- 234 (436)
Q Consensus 157 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~l~s~~~dg~v~vwd~~~~~- 234 (436)
+|+...... .....+..|.+.|.|++. .++ ..++|+|+-|+.|.+||++++.
T Consensus 99 ~W~~~~~~~-------------------------~c~stir~H~DYVkcla~~ak~-~~lvaSgGLD~~IflWDin~~~~ 152 (735)
T KOG0308|consen 99 VWNAHKDNT-------------------------FCMSTIRTHKDYVKCLAYIAKN-NELVASGGLDRKIFLWDINTGTA 152 (735)
T ss_pred EeecccCcc-------------------------hhHhhhhcccchheeeeecccC-ceeEEecCCCccEEEEEccCcch
Confidence 999875431 122235579999999999 565 5799999999999999999772
Q ss_pred -EE--------EEEc-ccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEE
Q 013827 235 -CN--------LTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV 304 (436)
Q Consensus 235 -~~--------~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 304 (436)
.+ ..+. ++..+|++++-++.| ..+++|+..+.+++||.++.+.+..+.+|...|..+..+++| ..+++
T Consensus 153 ~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDG-t~~ls 230 (735)
T KOG0308|consen 153 TLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDG-TRLLS 230 (735)
T ss_pred hhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCC-CeEee
Confidence 22 2233 788999999999999 899999999999999999999998889999999999999988 68999
Q ss_pred EeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCC
Q 013827 305 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG 384 (436)
Q Consensus 305 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 384 (436)
++.||+|++||+... .++.++..|...|+++..+|+- ..+++|+.||.|..=|+++......... ...
T Consensus 231 ~sSDgtIrlWdLgqQ---------rCl~T~~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~~~tlick--~da 298 (735)
T KOG0308|consen 231 ASSDGTIRLWDLGQQ---------RCLATYIVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPAKSTLICK--EDA 298 (735)
T ss_pred cCCCceEEeeecccc---------ceeeeEEeccCceEEEeeCCCc-ceEEecCCCCcEEecccCCchhheEeec--CCC
Confidence 999999999999976 7799999999999999999988 8999999999999999998543222222 234
Q ss_pred cEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 385 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 385 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
+|..+..+..... +-+++.|+.|+-|...-.
T Consensus 299 Pv~~l~~~~~~~~-~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 299 PVLKLHLHEHDNS-VWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred chhhhhhccccCC-ceeeeccccceecCCccc
Confidence 6777777755443 355778889999876543
No 113
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.3e-25 Score=212.77 Aligned_cols=253 Identities=21% Similarity=0.288 Sum_probs=202.3
Q ss_pred CCCCCcEEEEee--CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEE
Q 013827 139 DREKGNFMAVGS--MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 216 (436)
Q Consensus 139 ~s~~~~~l~~g~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 216 (436)
.+|||..+|+|+ .||.++||+.+.--.... .+.-.-.+.......|.+.|+|+.|+||| .+|
T Consensus 21 v~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~---------------~~~~~l~k~l~~m~~h~~sv~CVR~S~dG-~~l 84 (942)
T KOG0973|consen 21 VHPDGVKFATGGQVLDGGIVIWSQDPVLDEKE---------------EKNENLPKHLCTMDDHDGSVNCVRFSPDG-SYL 84 (942)
T ss_pred ecCCceeEecCCccccccceeeccccccchhh---------------hhhcccchhheeeccccCceeEEEECCCC-CeE
Confidence 399999999999 999999999864211000 00001244555667899999999999998 599
Q ss_pred EEEeCCCcEEEEeCCC------------------CeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCC
Q 013827 217 ASASADKQVKIWDVAA------------------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 278 (436)
Q Consensus 217 ~s~~~dg~v~vwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 278 (436)
|+|+.|+.|.||.... .+++..+.+|...|..++|+|++ .++++++.|++|.+||.++.+.
T Consensus 85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~ 163 (942)
T KOG0973|consen 85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFEL 163 (942)
T ss_pred eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEcccccee
Confidence 9999999999999762 14567788999999999999999 9999999999999999999988
Q ss_pred ccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec------cCCCeEEEEecCCCCC
Q 013827 279 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA------HDKAVCTISYNPLVPN 352 (436)
Q Consensus 279 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~p~~~~ 352 (436)
.....+|.+.|..+.|+|-| +++++-++|++|++|+.... .....+.. -......+.|+||| .
T Consensus 164 ~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw---------~i~k~It~pf~~~~~~T~f~RlSWSPDG-~ 232 (942)
T KOG0973|consen 164 LKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDW---------GIEKSITKPFEESPLTTFFLRLSWSPDG-H 232 (942)
T ss_pred eeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccc---------eeeEeeccchhhCCCcceeeecccCCCc-C
Confidence 88889999999999999988 69999999999999997664 22222222 23457889999999 8
Q ss_pred EEEEEeC----CCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCC--------C-------Cc-EEEEEeCCCcEEEEe
Q 013827 353 LLATGST----DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED--------S-------PF-VLAIGGSKGKLEIWD 412 (436)
Q Consensus 353 ~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~-------~~-~l~s~~~dg~i~iwd 412 (436)
+|++... -..+.|.+..+.+ .-..+-+|.+++.+++|+|. | .| ++|+|+.|++|-||.
T Consensus 233 ~las~nA~n~~~~~~~IieR~tWk--~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 233 HLASPNAVNGGKSTIAIIERGTWK--VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN 310 (942)
T ss_pred eecchhhccCCcceeEEEecCCce--eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence 8887644 3458888876655 56678899999999999982 1 12 789999999999999
Q ss_pred CCCCccccc
Q 013827 413 TLSDAGISN 421 (436)
Q Consensus 413 ~~~~~~~~~ 421 (436)
....+++..
T Consensus 311 T~~~RPl~v 319 (942)
T KOG0973|consen 311 TALPRPLFV 319 (942)
T ss_pred cCCCCchhh
Confidence 977776543
No 114
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=3.6e-24 Score=186.60 Aligned_cols=282 Identities=20% Similarity=0.298 Sum_probs=215.6
Q ss_pred CccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeC
Q 013827 72 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 151 (436)
Q Consensus 72 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 151 (436)
.++.|....|+|.++-|.+....+ +++.|....+.......-.+..-..+++|++| .++|+ +++|..
T Consensus 199 sne~v~~a~FHPtd~nliit~Gk~-----H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F-------~engd-viTgDS 265 (626)
T KOG2106|consen 199 SNEVVFLATFHPTDPNLIITCGKG-----HLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF-------LENGD-VITGDS 265 (626)
T ss_pred ccceEEEEEeccCCCcEEEEeCCc-----eEEEEEccCCceEEEeeccccccceEEEEEEE-------cCCCC-EEeecC
Confidence 456788899999988777776665 78888766652111111111222367889988 66777 789999
Q ss_pred CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCC
Q 013827 152 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 231 (436)
Q Consensus 152 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~ 231 (436)
+|.|.||+..+...... ...|.+.|.+++...+| .|++|+.|..|..||-.
T Consensus 266 ~G~i~Iw~~~~~~~~k~---------------------------~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~ 316 (626)
T KOG2106|consen 266 GGNILIWSKGTNRISKQ---------------------------VHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDN 316 (626)
T ss_pred CceEEEEeCCCceEEeE---------------------------eeecCCceEEEEEecCc--cEeecCccceEEecccc
Confidence 99999999854332221 22799999999999996 57779999999999821
Q ss_pred CC----------------------------------------eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEE
Q 013827 232 AG----------------------------------------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMK 271 (436)
Q Consensus 232 ~~----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~w 271 (436)
-. .......+|......++.+|+. ..+++++.|+.+++|
T Consensus 317 y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW 395 (626)
T KOG2106|consen 317 YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLW 395 (626)
T ss_pred ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hheeeccCcceEEEc
Confidence 00 0001224588889999999998 889999999999999
Q ss_pred ecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCC
Q 013827 272 DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP 351 (436)
Q Consensus 272 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 351 (436)
+ ...+........+..++.|+|.| .+++|+..|...+.|..+. . +.+++....++++++|+|+|
T Consensus 396 ~---~~k~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~---------~-lv~~~~d~~~ls~v~ysp~G- 459 (626)
T KOG2106|consen 396 N---DHKLEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQ---------D-LVTIHTDNEQLSVVRYSPDG- 459 (626)
T ss_pred c---CCceeEEEEecCceeEeeccCcc--eEEEeeccceEEEEecccc---------e-eEEEEecCCceEEEEEcCCC-
Confidence 9 34444455678899999999977 8999999999999999875 3 33444448999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 013827 352 NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 352 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 413 (436)
.+||.|+.|+.|+||.+..........-..+.++|+.+.|++|++| +.+-+.|-.|..|..
T Consensus 460 ~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~-~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 460 AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQF-LVSNSGDYEILYWKP 520 (626)
T ss_pred CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCce-EEeccCceEEEEEcc
Confidence 9999999999999999987664444434445589999999999996 888999999999943
No 115
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=5.4e-25 Score=198.63 Aligned_cols=341 Identities=13% Similarity=0.156 Sum_probs=240.7
Q ss_pred cCCCCcceeeecceeeccccc----------cceeccCCCCCCcc--cCCCCCCccccccceeccCCceEEEEEecCCcc
Q 013827 31 NASNTSSIWLISGVEIFGKGL----------GDLYYASNQMDPYL--KDKDDEDSEDLEDMTINPNDAVIVCARNEDDVS 98 (436)
Q Consensus 31 ~~~~t~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~ 98 (436)
|+|.++|||.+.......... .+.+...++.+-.+ .....+|++.|+++.|+|.+..|++++.|.
T Consensus 213 SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDk--- 289 (764)
T KOG1063|consen 213 SQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADK--- 289 (764)
T ss_pred CCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCc---
Confidence 999999999985544322111 11111111111000 013358999999999999999999998887
Q ss_pred eeEEEEEecCCCCCC---ceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeeccc
Q 013827 99 HLEVYILEESDGGDP---NLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGI 175 (436)
Q Consensus 99 ~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~ 175 (436)
.+.+|+..+..-. .+..+....-...-....| +|+++.+++-+..|..++|.......
T Consensus 290 --smiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw-------~~n~~~ii~~g~~Gg~hlWkt~d~~~---------- 350 (764)
T KOG1063|consen 290 --SMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLW-------SPNSNVIIAHGRTGGFHLWKTKDKTF---------- 350 (764)
T ss_pred --ceEEEecCCccceEEEEEEeecccccccceeeEEE-------cCCCCEEEEecccCcEEEEeccCccc----------
Confidence 6777766553100 0111111100000122234 89999999999999999998322111
Q ss_pred chhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCe----EEEEEcccCCCeEEEEE
Q 013827 176 DEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK----CNLTLEHHTDKVQAVAW 251 (436)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~----~~~~~~~~~~~v~~~~~ 251 (436)
........||.+.|++++|+|.|. +|++.+.|.+-|++-.-..+ .+.+-+-|...++|+++
T Consensus 351 --------------w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~ 415 (764)
T KOG1063|consen 351 --------------WTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF 415 (764)
T ss_pred --------------eeeccccccccccceeeeecCCCC-EEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence 122223558999999999999985 99999999999998754221 23333568889999999
Q ss_pred cCCCCCEEEEEECCCcEEEEecCC-------------------------------------------CC-----------
Q 013827 252 NHHSPQILLSGSFDRSVVMKDARI-------------------------------------------ST----------- 277 (436)
Q Consensus 252 ~~~~~~~l~s~~~d~~i~~wd~~~-------------------------------------------~~----------- 277 (436)
-+.. ..+++|.....+++++... +.
T Consensus 416 vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~ 494 (764)
T KOG1063|consen 416 VNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLA 494 (764)
T ss_pred ccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccc
Confidence 8864 6899999999999997420 00
Q ss_pred ----------------------CccceEeeeCCeeEEEeCCCCCcEEEEEeCCC-----cEEEEeCCCCCCCCCCCCCcc
Q 013827 278 ----------------------HSGFKWAVAADVESLAWDPHAEHSFVVSLEDG-----TIKGFDIRTAKSDPDSTSQQS 330 (436)
Q Consensus 278 ----------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~ 330 (436)
....+++|...|.+++.+|++ +++++++... .|++|+..+. ..
T Consensus 495 ~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W---------~~ 564 (764)
T KOG1063|consen 495 AAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANW---------LQ 564 (764)
T ss_pred cCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccch---------hh
Confidence 011234566789999999987 7898887643 5899999887 55
Q ss_pred cEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc--eeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcE
Q 013827 331 SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP--SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKL 408 (436)
Q Consensus 331 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 408 (436)
...+..|.-.|+.++|+|++ ++|++.+.|.++.+|....... ........|..-|+++.|+|++.+ ++|++.|.+|
T Consensus 565 ~~~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~-FaTaSRDK~V 642 (764)
T KOG1063|consen 565 VQELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY-FATASRDKKV 642 (764)
T ss_pred hheecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccce-eEEecCCceE
Confidence 67899999999999999999 9999999999999998854321 112235678889999999999997 9999999999
Q ss_pred EEEeCCCC--ccccc
Q 013827 409 EIWDTLSD--AGISN 421 (436)
Q Consensus 409 ~iwd~~~~--~~~~~ 421 (436)
++|..... +.+.+
T Consensus 643 kVW~~~~~~d~~i~~ 657 (764)
T KOG1063|consen 643 KVWEEPDLRDKYISR 657 (764)
T ss_pred EEEeccCchhhhhhh
Confidence 99999887 44433
No 116
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=4.2e-25 Score=203.28 Aligned_cols=348 Identities=14% Similarity=0.213 Sum_probs=256.3
Q ss_pred hhcccceeeec------cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEEe
Q 013827 20 YHSCFRCHKIS------NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARN 93 (436)
Q Consensus 20 ~~~~~~~~~~~------~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 93 (436)
+..+++-.|++ .+.|+..+||+++.++.... ...|.+.|....|-|..+.+++++.
T Consensus 247 VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~------------------~nah~~sv~~~~fl~~epVl~ta~~ 308 (910)
T KOG1539|consen 247 VTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVT------------------RNAHYGSVTGATFLPGEPVLVTAGA 308 (910)
T ss_pred eeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeee------------------eccccCCcccceecCCCceEeeccC
Confidence 33444444554 55578999999988875322 2356788999999999999999988
Q ss_pred cCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcc-----
Q 013827 94 EDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQP----- 168 (436)
Q Consensus 94 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~----- 168 (436)
|+ .+++|+++..++....+ .........|.|+.+. ..+|..+.+++.|++.+.+++.....-+.
T Consensus 309 Dn---Slk~~vfD~~dg~pR~L--R~R~GHs~Pp~~irfy------~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~ 377 (910)
T KOG1539|consen 309 DN---SLKVWVFDSGDGVPRLL--RSRGGHSAPPSCIRFY------GSQGHFILSAKQDRTLRSFSVISESQSQELGQLH 377 (910)
T ss_pred CC---ceeEEEeeCCCCcchhe--eeccCCCCCchheeee------ccCcEEEEecccCcchhhhhhhHHHHhHhhcccc
Confidence 85 46999999776643322 2233344567888874 46899999999999999887643211110
Q ss_pred --------------------eeeecccchhhhhhc-------------ccCCCcccc-ccc-----ccCcccceeEEEec
Q 013827 169 --------------------HVILGGIDEEKKKKK-------------SKKGKKSSI-KYK-----KGSHTDSVLGLAWN 209 (436)
Q Consensus 169 --------------------~~~~~~~~~~~~~~~-------------~~~~~~~~~-~~~-----~~~h~~~v~~~~~~ 209 (436)
+..+.......+.+. ...-+.... .+. ++.....+++++.+
T Consensus 378 ~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs 457 (910)
T KOG1539|consen 378 NKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS 457 (910)
T ss_pred cccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe
Confidence 000100000000000 000001111 111 12234679999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCeEEEEE---cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeee
Q 013827 210 KEFRNILASASADKQVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA 286 (436)
Q Consensus 210 ~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 286 (436)
+.| ++.+.|...|.|-+|++++|-....+ ..|..+|++++....+ +.+++++.+|.+.+||........ .....
T Consensus 458 ~CG-NF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l~~-~l~l~ 534 (910)
T KOG1539|consen 458 FCG-NFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVLKK-SLRLG 534 (910)
T ss_pred ccC-ceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcceee-eeccC
Confidence 997 69999999999999999999888888 5799999999999888 899999999999999998776433 45567
Q ss_pred CCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEE
Q 013827 287 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 366 (436)
Q Consensus 287 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iw 366 (436)
..+..+..+... .+++.+.+|-.|+++|..+. +.++.+.+|...|+.++|||+| ++|++++.|++|++|
T Consensus 535 ~~~~~iv~hr~s-~l~a~~~ddf~I~vvD~~t~---------kvvR~f~gh~nritd~~FS~Dg-rWlisasmD~tIr~w 603 (910)
T KOG1539|consen 535 SSITGIVYHRVS-DLLAIALDDFSIRVVDVVTR---------KVVREFWGHGNRITDMTFSPDG-RWLISASMDSTIRTW 603 (910)
T ss_pred CCcceeeeeehh-hhhhhhcCceeEEEEEchhh---------hhhHHhhccccceeeeEeCCCC-cEEEEeecCCcEEEE
Confidence 778888887755 57888999999999999887 6688999999999999999999 999999999999999
Q ss_pred ECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCC-CcEEEEeCC
Q 013827 367 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-GKLEIWDTL 414 (436)
Q Consensus 367 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~ 414 (436)
|+.++..+-... -..+..++.|+|+|.+ |||...| .-|++|.-.
T Consensus 604 Dlpt~~lID~~~---vd~~~~sls~SPngD~-LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 604 DLPTGTLIDGLL---VDSPCTSLSFSPNGDF-LATVHVDQNGIYLWSNK 648 (910)
T ss_pred eccCcceeeeEe---cCCcceeeEECCCCCE-EEEEEecCceEEEEEch
Confidence 999998433322 3458899999999995 8888887 679999654
No 117
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=7.7e-24 Score=190.35 Aligned_cols=278 Identities=13% Similarity=0.103 Sum_probs=188.7
Q ss_pred ceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEE-EEeeCCCcEEEEeCCCCC
Q 013827 86 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIWDLDVID 164 (436)
Q Consensus 86 ~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~vw~~~~~~ 164 (436)
.++++++.++ .+.+|+.........+..+ ..+.++.| +|+++.+ ++++.++.|++||..+++
T Consensus 2 ~~~~s~~~d~-----~v~~~d~~t~~~~~~~~~~-----~~~~~l~~-------~~dg~~l~~~~~~~~~v~~~d~~~~~ 64 (300)
T TIGR03866 2 KAYVSNEKDN-----TISVIDTATLEVTRTFPVG-----QRPRGITL-------SKDGKLLYVCASDSDTIQVIDLATGE 64 (300)
T ss_pred cEEEEecCCC-----EEEEEECCCCceEEEEECC-----CCCCceEE-------CCCCCEEEEEECCCCeEEEEECCCCc
Confidence 4566776665 7778877655322222222 11234555 8999876 567788999999998654
Q ss_pred CCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCC
Q 013827 165 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTD 244 (436)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 244 (436)
.... +..+ ..+..++|+|++..++++++.|+.+++||+.+.+.+..+.. ..
T Consensus 65 ~~~~---------------------------~~~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~ 115 (300)
T TIGR03866 65 VIGT---------------------------LPSG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GV 115 (300)
T ss_pred EEEe---------------------------ccCC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CC
Confidence 3321 1122 23467899999764455666789999999998887777753 34
Q ss_pred CeEEEEEcCCCCCEEEEEECCC-cEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCC
Q 013827 245 KVQAVAWNHHSPQILLSGSFDR-SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP 323 (436)
Q Consensus 245 ~v~~~~~~~~~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~ 323 (436)
.+.+++|+|++ .++++++.++ .+.+||.++...... ......+..++|+|++..+++++..++.|++||+.+.+
T Consensus 116 ~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~--- 190 (300)
T TIGR03866 116 EPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVDN-VLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK--- 190 (300)
T ss_pred CcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEEE-EEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce---
Confidence 56889999999 7788877765 567789876654332 22344567899999986555666679999999998763
Q ss_pred CCCCCcccEEEecc-------CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCC
Q 013827 324 DSTSQQSSFTLHAH-------DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP 396 (436)
Q Consensus 324 ~~~~~~~~~~~~~~-------~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 396 (436)
.+..+..+ ......++|+|++...+++.+.++.+.+||+++.+... .. .+...+.+++|+|+|+
T Consensus 191 ------~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~--~~-~~~~~~~~~~~~~~g~ 261 (300)
T TIGR03866 191 ------VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD--YL-LVGQRVWQLAFTPDEK 261 (300)
T ss_pred ------eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE--EE-EeCCCcceEEECCCCC
Confidence 22222211 11235688999993334445567789999998876322 22 2334788999999999
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccc
Q 013827 397 FVLAIGGSKGKLEIWDTLSDAGISNRF 423 (436)
Q Consensus 397 ~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (436)
+++++++.+|.|++||+.+++.+.+.-
T Consensus 262 ~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 262 YLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 644445679999999999998876653
No 118
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.9e-25 Score=183.87 Aligned_cols=234 Identities=24% Similarity=0.351 Sum_probs=200.7
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 221 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 221 (436)
....+.+++.|.+.+||.++++.++.. +.||.+.|+++.|++.+ .++++++.
T Consensus 159 tqpi~gtASADhTA~iWs~Esg~CL~~---------------------------Y~GH~GSVNsikfh~s~-~L~lTaSG 210 (481)
T KOG0300|consen 159 TQPICGTASADHTARIWSLESGACLAT---------------------------YTGHTGSVNSIKFHNSG-LLLLTASG 210 (481)
T ss_pred CCcceeecccccceeEEeeccccceee---------------------------ecccccceeeEEecccc-ceEEEccC
Confidence 345788999999999999999888765 66999999999999996 69999999
Q ss_pred CCcEEEEeCC------C----------------------------------CeEEEEEcccCCCeEEEEEcCCCCCEEEE
Q 013827 222 DKQVKIWDVA------A----------------------------------GKCNLTLEHHTDKVQAVAWNHHSPQILLS 261 (436)
Q Consensus 222 dg~v~vwd~~------~----------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 261 (436)
|++..||... . ..++..+.+|...|.+..|...| ..+++
T Consensus 211 D~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~Q~vT 289 (481)
T KOG0300|consen 211 DETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-QQMVT 289 (481)
T ss_pred CcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-ceeee
Confidence 9999999721 0 02345678899999999999988 88999
Q ss_pred EECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCe
Q 013827 262 GSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 341 (436)
Q Consensus 262 ~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 341 (436)
++.|.+..+||++++.....+.+|....+.++-+|.. .++++++.|.+.++||++.. ...+..+++|...|
T Consensus 290 aSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFRea--------I~sV~VFQGHtdtV 360 (481)
T KOG0300|consen 290 ASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREA--------IQSVAVFQGHTDTV 360 (481)
T ss_pred eeccccceeeeeccCceeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhh--------cceeeeecccccce
Confidence 9999999999999999999899999999999999965 79999999999999999965 46678899999999
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 342 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 342 ~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
+++.|..+ ..+++|+.|.+|++||+++... .+.++. -.++++.++.+..++ +++.--.+..|++||+.....
T Consensus 361 TS~vF~~d--d~vVSgSDDrTvKvWdLrNMRs-plATIR-tdS~~NRvavs~g~~-iIAiPhDNRqvRlfDlnG~Rl 432 (481)
T KOG0300|consen 361 TSVVFNTD--DRVVSGSDDRTVKVWDLRNMRS-PLATIR-TDSPANRVAVSKGHP-IIAIPHDNRQVRLFDLNGNRL 432 (481)
T ss_pred eEEEEecC--CceeecCCCceEEEeeeccccC-cceeee-cCCccceeEeecCCc-eEEeccCCceEEEEecCCCcc
Confidence 99999985 4789999999999999998653 344443 345899999998888 788888889999999965543
No 119
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=4.1e-24 Score=196.83 Aligned_cols=320 Identities=16% Similarity=0.253 Sum_probs=240.0
Q ss_pred cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCC
Q 013827 31 NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG 110 (436)
Q Consensus 31 ~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~ 110 (436)
++++...|||+...++..... ++.+.|+++.=+|--..+|.|..+| +|.+++...+
T Consensus 179 s~~G~lql~Nvrt~K~v~~f~-------------------~~~s~IT~ieqsPaLDVVaiG~~~G-----~ViifNlK~d 234 (910)
T KOG1539|consen 179 SSQGRLQLWNVRTGKVVYTFQ-------------------EFFSRITAIEQSPALDVVAIGLENG-----TVIIFNLKFD 234 (910)
T ss_pred ecCCcEEEEEeccCcEEEEec-------------------ccccceeEeccCCcceEEEEeccCc-----eEEEEEcccC
Confidence 788999999998877753222 4457899999999999999999887 8888888877
Q ss_pred CCCceeeecccccCcCcceeecccCCCCCCCCCcE-EEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCc
Q 013827 111 GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF-MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKK 189 (436)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (436)
+..-.+.+... .++.+.| ..||+. ||+|+..|.+.+||++....
T Consensus 235 kil~sFk~d~g----~VtslSF-------rtDG~p~las~~~~G~m~~wDLe~kkl------------------------ 279 (910)
T KOG1539|consen 235 KILMSFKQDWG----RVTSLSF-------RTDGNPLLASGRSNGDMAFWDLEKKKL------------------------ 279 (910)
T ss_pred cEEEEEEcccc----ceeEEEe-------ccCCCeeEEeccCCceEEEEEcCCCee------------------------
Confidence 33322222212 2233433 667765 56677779999999984332
Q ss_pred ccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC----eEEEEEcccCCCeEEEEEcCCCCCEEEEEECC
Q 013827 190 SSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD 265 (436)
Q Consensus 190 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 265 (436)
.......|.+.|..+.|.|. ...+++++.|+++++|=.+++ +.++.-.+|..+..++.|.......+.+++.|
T Consensus 280 --~~v~~nah~~sv~~~~fl~~-epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~D 356 (910)
T KOG1539|consen 280 --INVTRNAHYGSVTGATFLPG-EPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQD 356 (910)
T ss_pred --eeeeeccccCCcccceecCC-CceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccC
Confidence 22334579999999999997 469999999999998866543 34555678999999999985444889999999
Q ss_pred CcEEEEecCC-----------------------------------------------------------------CCCcc
Q 013827 266 RSVVMKDARI-----------------------------------------------------------------STHSG 280 (436)
Q Consensus 266 ~~i~~wd~~~-----------------------------------------------------------------~~~~~ 280 (436)
++++.+++.. ...-.
T Consensus 357 rt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~ 436 (910)
T KOG1539|consen 357 RTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGR 436 (910)
T ss_pred cchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccccc
Confidence 8777766421 10000
Q ss_pred ceEee------eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE---eccCCCeEEEEecCCCC
Q 013827 281 FKWAV------AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL---HAHDKAVCTISYNPLVP 351 (436)
Q Consensus 281 ~~~~~------~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~ 351 (436)
....+ ...+++++.++.| ++.+.|...|.|-+|++.++ .....+ ..|.++|+.++...-+
T Consensus 437 ~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSG---------i~r~sf~~~~ah~~~V~gla~D~~n- 505 (910)
T KOG1539|consen 437 HVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFNMQSG---------IHRKSFGDSPAHKGEVTGLAVDGTN- 505 (910)
T ss_pred EEecCccccccCcceEEEEEeccC-ceEEEeccCCeEEEEEcccC---------eeecccccCccccCceeEEEecCCC-
Confidence 11111 1457788888877 78999999999999999988 333344 5899999999999877
Q ss_pred CEEEEEeCCCcEEEEECCCCCce---------------------------------------eEEeeCCCCCcEEEEEEc
Q 013827 352 NLLATGSTDKMVKLWDLSNNQPS---------------------------------------CIASRNPKAGAVFSVAFS 392 (436)
Q Consensus 352 ~~l~~~~~d~~i~iwd~~~~~~~---------------------------------------~~~~~~~~~~~v~~~~~~ 392 (436)
+.+++++.+|.+++||.....+. .+..+.+|...|++++||
T Consensus 506 ~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS 585 (910)
T KOG1539|consen 506 RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS 585 (910)
T ss_pred ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC
Confidence 89999999999999998764311 223456799999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCcccccccc
Q 013827 393 EDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 424 (436)
Q Consensus 393 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (436)
|||++ |++++.|++|++||+.++.++.....
T Consensus 586 ~DgrW-lisasmD~tIr~wDlpt~~lID~~~v 616 (910)
T KOG1539|consen 586 PDGRW-LISASMDSTIRTWDLPTGTLIDGLLV 616 (910)
T ss_pred CCCcE-EEEeecCCcEEEEeccCcceeeeEec
Confidence 99996 89999999999999999998865443
No 120
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.9e-24 Score=168.02 Aligned_cols=300 Identities=20% Similarity=0.246 Sum_probs=214.1
Q ss_pred HHhhcccceeeec-----cCCCCcceeeecceeeccccccceeccCCCCCCc-ccCCCCCCccccccceeccCCceEEEE
Q 013827 18 RLYHSCFRCHKIS-----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPY-LKDKDDEDSEDLEDMTINPNDAVIVCA 91 (436)
Q Consensus 18 ~~~~~~~~~~~~~-----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~ 91 (436)
..+..+.+.|.+. +...|.||--.+..--.-.. ++....-|. +...+..|.+.|++.+|||+|.+|++|
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~-----hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg 107 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHA-----HEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG 107 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccc-----cccccCCCeEEeeeccccCccEEEEEecCccCeEEec
Confidence 3455566777665 77778888744322111000 111111122 233567889999999999999999999
Q ss_pred EecCCcceeEEEEEecCCCCCC---ceeeecccccCcCcceeecccCCCCCCCCCcEEEEee-CCCcEEEEeCCCCCCCc
Q 013827 92 RNEDDVSHLEVYILEESDGGDP---NLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS-MEPAIEIWDLDVIDEVQ 167 (436)
Q Consensus 92 ~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~vw~~~~~~~~~ 167 (436)
+.+.. +++.-++..+.... -.+..|+..+ ..++|+.- .+..+.+|++++ .|..|++-|-..++...
T Consensus 108 sndk~---ik~l~fn~dt~~~~g~dle~nmhdgti----rdl~fld~---~~s~~~il~s~gagdc~iy~tdc~~g~~~~ 177 (350)
T KOG0641|consen 108 SNDKT---IKVLPFNADTCNATGHDLEFNMHDGTI----RDLAFLDD---PESGGAILASAGAGDCKIYITDCGRGQGFH 177 (350)
T ss_pred CCCce---EEEEecccccccccCcceeeeecCCce----eeeEEecC---CCcCceEEEecCCCcceEEEeecCCCCcce
Confidence 98863 36666655543111 1122333322 23444322 134567777765 45667777766555444
Q ss_pred ceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcc------
Q 013827 168 PHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH------ 241 (436)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~------ 241 (436)
. +.+|++-|.++- +-+| .++++|+.|.+|++||++-..++..+..
T Consensus 178 a---------------------------~sghtghilaly-swn~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g 228 (350)
T KOG0641|consen 178 A---------------------------LSGHTGHILALY-SWNG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG 228 (350)
T ss_pred e---------------------------ecCCcccEEEEE-EecC-cEEEccCCCceEEEEeeeccceeeeccCcccCCC
Confidence 3 668999998874 2333 4999999999999999998888877632
Q ss_pred -cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCC
Q 013827 242 -HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 320 (436)
Q Consensus 242 -~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 320 (436)
..+.|.+++..|.| ++|++|..|....+||++.+..++.+..|...|.++.|+|. ..++++++.|..|++-|+...-
T Consensus 229 lessavaav~vdpsg-rll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~-a~yllt~syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 229 LESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPG-AHYLLTCSYDMKIKLTDLQGDL 306 (350)
T ss_pred cccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCC-ceEEEEecccceEEEeecccch
Confidence 23679999999999 99999999999999999999999999999999999999994 5899999999999999987541
Q ss_pred CCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 013827 321 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 369 (436)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~ 369 (436)
. ..-++.....|...+..+.|+|.. .-+++.+.|.++.+|.+.
T Consensus 307 a-----~el~~~vv~ehkdk~i~~rwh~~d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 307 A-----HELPIMVVAEHKDKAIQCRWHPQD-FSFISSSADKTATLWALN 349 (350)
T ss_pred h-----hcCceEEEEeccCceEEEEecCcc-ceeeeccCcceEEEeccC
Confidence 1 123455667788889999999987 788899999999999764
No 121
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.1e-24 Score=186.43 Aligned_cols=240 Identities=17% Similarity=0.234 Sum_probs=194.3
Q ss_pred CcEEEEeeC-CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC
Q 013827 143 GNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 221 (436)
Q Consensus 143 ~~~l~~g~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 221 (436)
+.+++++.. ...|.+|.+........ ..--.++|.+++-+|.| .+|+.|+.
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~~~q---------------------------~~v~Pg~v~al~s~n~G-~~l~ag~i 101 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQVVQ---------------------------YIVLPGPVHALASSNLG-YFLLAGTI 101 (476)
T ss_pred hhheeeecccCccccccccCchhhhhh---------------------------hcccccceeeeecCCCc-eEEEeecc
Confidence 466776654 46789999874333321 11246789999999997 58888879
Q ss_pred CCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC---------CCCccceEeeeCCeeEE
Q 013827 222 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI---------STHSGFKWAVAADVESL 292 (436)
Q Consensus 222 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~---------~~~~~~~~~~~~~i~~~ 292 (436)
.|.+++|.+.+|..+..+..|-..|+++.|+.|| .+|++|+.||.|.+|++-. ..+......|.-+|+.+
T Consensus 102 ~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl 180 (476)
T KOG0646|consen 102 SGNLYLWELSSGILLNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDL 180 (476)
T ss_pred cCcEEEEEeccccHHHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEE
Confidence 9999999999999999999999999999999999 9999999999999998642 22334455688899999
Q ss_pred EeCCCC-CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 013827 293 AWDPHA-EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 371 (436)
Q Consensus 293 ~~~~~~-~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~ 371 (436)
...+.+ ...+++++.|.++++||+..+ ..+.++ .....+.+++..|-+ +.+++|+.+|.|.+.++...
T Consensus 181 ~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---------~LLlti-~fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 181 QIGSGGTNARLYTASEDRTIKLWDLSLG---------VLLLTI-TFPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKL 249 (476)
T ss_pred EecCCCccceEEEecCCceEEEEEeccc---------eeeEEE-ecCCcceeEEEcccc-cEEEecCCcceEEeeehhcC
Confidence 887742 347999999999999999987 444444 356789999999987 99999999999999887543
Q ss_pred C--------------ceeEEeeCCCCC--cEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccc
Q 013827 372 Q--------------PSCIASRNPKAG--AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 423 (436)
Q Consensus 372 ~--------------~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (436)
. ......+.+|.+ +|+|++.+-||. +|++|+.||.++|||+.+.+++++..
T Consensus 250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred CcccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchHHHHHHHh
Confidence 2 123445667877 999999999999 79999999999999999999988765
No 122
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.6e-24 Score=186.87 Aligned_cols=294 Identities=15% Similarity=0.236 Sum_probs=220.2
Q ss_pred CccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCc-EEEEee
Q 013827 72 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAVGS 150 (436)
Q Consensus 72 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~ 150 (436)
....|++|.|+|..++|++++.++ .+.+|.......+.+...| +..+|+.. ..|.|+|. .+++++
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~-----~lrifqvDGk~N~~lqS~~---l~~fPi~~------a~f~p~G~~~i~~s~ 277 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDG-----TLRIFQVDGKVNPKLQSIH---LEKFPIQK------AEFAPNGHSVIFTSG 277 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCC-----cEEEEEecCccChhheeee---eccCccce------eeecCCCceEEEecc
Confidence 457899999999999999999987 6666666554333222222 22333211 12378998 899999
Q ss_pred CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCc-ccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 151 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH-TDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
.....+.||+.+.+...... ..++ ...+.....++++ ++|+..+..|.|.+..
T Consensus 278 rrky~ysyDle~ak~~k~~~-------------------------~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLh 331 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKVTKLKP-------------------------PYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLH 331 (514)
T ss_pred cceEEEEeeccccccccccC-------------------------CCCcccchhheeEecCCC-CeEEEcccCceEEeeh
Confidence 99999999998655432211 1122 3457778889996 5999999999999999
Q ss_pred CCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCe--eEEEeCCCCCcEEEEEeC
Q 013827 230 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADV--ESLAWDPHAEHSFVVSLE 307 (436)
Q Consensus 230 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~ 307 (436)
..+++.+..++ -.+.|..+.|+.++ ..|++++.+|.|.+||++...+.. .+...+.+ ++++.++++ .++++|+.
T Consensus 332 akT~eli~s~K-ieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~~~~-rf~D~G~v~gts~~~S~ng-~ylA~GS~ 407 (514)
T KOG2055|consen 332 AKTKELITSFK-IEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQNSCLH-RFVDDGSVHGTSLCISLNG-SYLATGSD 407 (514)
T ss_pred hhhhhhhheee-eccEEeeEEEecCC-cEEEEEcCCceEEEEecCCcceEE-EEeecCccceeeeeecCCC-ceEEeccC
Confidence 99999998887 56889999999999 888888889999999999986554 44444444 566667877 59999999
Q ss_pred CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeC--CCcEEEEECCCCCceeEE-eeCCCCC
Q 013827 308 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSNNQPSCIA-SRNPKAG 384 (436)
Q Consensus 308 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~-~~~~~~~ 384 (436)
.|.|.|||..+..... ..+++..+..-...|+++.|+|+. .+||.++. +..+++-.+.+.....-+ .....-+
T Consensus 408 ~GiVNIYd~~s~~~s~---~PkPik~~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg 483 (514)
T KOG2055|consen 408 SGIVNIYDGNSCFAST---NPKPIKTVDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVG 483 (514)
T ss_pred cceEEEeccchhhccC---CCCchhhhhhhheeeeeeeeCcch-hhhhhhhhccccceEEEeccceeeeccCCCCCCccc
Confidence 9999999976543222 246677777778899999999998 88888776 677999888765411111 1123345
Q ss_pred cEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 385 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 385 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
.|+||+|+|.+.+ ||.|..+|.+.+|.+.
T Consensus 484 ~vtc~aFSP~sG~-lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 484 HVTCMAFSPNSGY-LAVGNEAGRVHLFKLH 512 (514)
T ss_pred ceEEEEecCCCce-EEeecCCCceeeEeec
Confidence 7999999999985 9999999999999875
No 123
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=4.2e-25 Score=180.04 Aligned_cols=218 Identities=23% Similarity=0.393 Sum_probs=181.7
Q ss_pred CcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCe------------EE---EEEcccCCCeEEEEEcCCCCCEEEEE
Q 013827 198 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK------------CN---LTLEHHTDKVQAVAWNHHSPQILLSG 262 (436)
Q Consensus 198 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~------------~~---~~~~~~~~~v~~~~~~~~~~~~l~s~ 262 (436)
.|.+.|+++...+....++++|+.||.|.+||++... ++ ..-.+|...|.++.|-|-...++.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 6899999999999766799999999999999997432 11 01136888999999999776799999
Q ss_pred ECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCC--CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCC
Q 013827 263 SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA--EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA 340 (436)
Q Consensus 263 ~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (436)
+.|.++++||..+.+... .+..++.|.+-+++|-. .-++++|..+-.|++-|+.++ .....+.+|...
T Consensus 121 SFDhtlKVWDtnTlQ~a~-~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG---------s~sH~LsGHr~~ 190 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAV-DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG---------SFSHTLSGHRDG 190 (397)
T ss_pred cccceEEEeecccceeeE-EeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC---------cceeeeccccCc
Confidence 999999999999876554 56778889988888843 247888999999999999998 678899999999
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEECCCC-------------CceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCc
Q 013827 341 VCTISYNPLVPNLLATGSTDKMVKLWDLSNN-------------QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK 407 (436)
Q Consensus 341 v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 407 (436)
|.++.|+|..+..|++|+.||.|++||++.. .+..+..-..|.+.|+.++|..++.+ +++++.|..
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~-l~~~gtd~r 269 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY-LASCGTDDR 269 (397)
T ss_pred eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh-hhhccCccc
Confidence 9999999988788999999999999999753 11122234568889999999999997 888999999
Q ss_pred EEEEeCCCCccccccccCC
Q 013827 408 LEIWDTLSDAGISNRFSKY 426 (436)
Q Consensus 408 i~iwd~~~~~~~~~~~~~~ 426 (436)
+++|+..+|+.....+...
T Consensus 270 ~r~wn~~~G~ntl~~~g~~ 288 (397)
T KOG4283|consen 270 IRVWNMESGRNTLREFGPI 288 (397)
T ss_pred eEEeecccCcccccccccc
Confidence 9999999998766655543
No 124
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.94 E-value=2.4e-24 Score=187.37 Aligned_cols=295 Identities=18% Similarity=0.210 Sum_probs=220.3
Q ss_pred cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCC
Q 013827 31 NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG 110 (436)
Q Consensus 31 ~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~ 110 (436)
+.+.++.|||....+.- +....-..++ .+.++.|+.... |+++...++. .+.+|+....
T Consensus 9 S~gd~~kl~D~s~~~~~---------------~~~~~~t~~p--g~~s~~w~~~n~-lvvas~~gdk---~~~~~~K~g~ 67 (673)
T KOG4378|consen 9 STGDKTKLSDFSDLETK---------------SEYVHQTAEP--GDFSFNWQRRNF-LVVASMAGDK---VMRIKEKDGK 67 (673)
T ss_pred ccCCceEEeecccccCc---------------cccccCCCCC--cceeeeccccce-EEEeecCCce---eEEEecccCC
Confidence 56678999988877662 2222211122 288888988776 5555444432 4455544332
Q ss_pred CCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcc
Q 013827 111 GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKS 190 (436)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (436)
.+.+........ .-..|++- .....|+++|+..+.|.|||+.. +
T Consensus 68 -~~~Vp~~~k~~g-d~~~Cv~~-------~s~S~y~~sgG~~~~Vkiwdl~~---------------------------k 111 (673)
T KOG4378|consen 68 -TPEVPRVRKLTG-DNAFCVAC-------ASQSLYEISGGQSGCVKIWDLRA---------------------------K 111 (673)
T ss_pred -CCccceeecccc-chHHHHhh-------hhcceeeeccCcCceeeehhhHH---------------------------H
Confidence 111111111111 13356544 33458999999999999999963 3
Q ss_pred cccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEccc-CCCeEEEEEcCCCCCEEEEEECCCcEE
Q 013827 191 SIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVV 269 (436)
Q Consensus 191 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~ 269 (436)
.....+.+|...|+++.++..+ .+||+++..|.|.|..+.++.....|... ...|.-+.|++....+|.+++.+|.|.
T Consensus 112 l~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt 190 (673)
T KOG4378|consen 112 LIHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT 190 (673)
T ss_pred HHhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence 3344477999999999999985 69999999999999999999888888644 345668999998878889999999999
Q ss_pred EEecCCCCCccc-eEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecC
Q 013827 270 MKDARISTHSGF-KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP 348 (436)
Q Consensus 270 ~wd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 348 (436)
+||+....+... ...|..+...++|+|..+.++++.+.|..|.+||.+.. .....+ ....+...++|.+
T Consensus 191 lwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~---------~s~~~l-~y~~Plstvaf~~ 260 (673)
T KOG4378|consen 191 LWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ---------ASTDRL-TYSHPLSTVAFSE 260 (673)
T ss_pred EEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc---------ccccee-eecCCcceeeecC
Confidence 999988776543 34688999999999999999999999999999999965 222222 3567889999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCC
Q 013827 349 LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS 395 (436)
Q Consensus 349 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 395 (436)
+| .+|++|...|.|..||++..+ ..+.....|...|++++|-|.-
T Consensus 261 ~G-~~L~aG~s~G~~i~YD~R~~k-~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 261 CG-TYLCAGNSKGELIAYDMRSTK-APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred Cc-eEEEeecCCceEEEEecccCC-CCceEeeecccceeEEEeeecc
Confidence 99 999999999999999999765 3677778899999999998764
No 125
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=3.6e-25 Score=200.36 Aligned_cols=289 Identities=14% Similarity=0.205 Sum_probs=217.7
Q ss_pred cCCCCcceeeecc--------eeeccccccceeccCCCCCCcccCC----------CCCCccccccceeccCCceEEEEE
Q 013827 31 NASNTSSIWLISG--------VEIFGKGLGDLYYASNQMDPYLKDK----------DDEDSEDLEDMTINPNDAVIVCAR 92 (436)
Q Consensus 31 ~~~~t~~~w~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~sp~~~~l~~~~ 92 (436)
++|||+|+|+++. +.++++......|++.+..-+.... .-+..-.+.++++||+|++||+|.
T Consensus 399 SsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGD 478 (1080)
T KOG1408|consen 399 SSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGD 478 (1080)
T ss_pred cCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccC
Confidence 8999999999965 1333333344555555432221111 012334688999999999999996
Q ss_pred ecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeee
Q 013827 93 NEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVIL 172 (436)
Q Consensus 93 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~ 172 (436)
.-+ .+.+|+..+.+.....-.|+..+ +|+.+..- --..++||+++.|..|.|+|+.
T Consensus 479 r~G-----nlrVy~Lq~l~~~~~~eAHesEi----lcLeyS~p----~~~~kLLASasrdRlIHV~Dv~----------- 534 (1080)
T KOG1408|consen 479 RGG-----NLRVYDLQELEYTCFMEAHESEI----LCLEYSFP----VLTNKLLASASRDRLIHVYDVK----------- 534 (1080)
T ss_pred ccC-----ceEEEEehhhhhhhheeccccee----EEEeecCc----hhhhHhhhhccCCceEEEEecc-----------
Confidence 655 66777766654445555555444 78887311 1135789999999999999986
Q ss_pred cccchhhhhhcccCCCcccccccccCcccceeEEEecCCC-CcEEEEEeCCCcEEEEeCCCCeEEEEEccc-----CCCe
Q 013827 173 GGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVKIWDVAAGKCNLTLEHH-----TDKV 246 (436)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-----~~~v 246 (436)
+...+...+.+|...|+++.|...| ...+++++.|..|.+--.+.......+..| ...+
T Consensus 535 ---------------rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTl 599 (1080)
T KOG1408|consen 535 ---------------RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTL 599 (1080)
T ss_pred ---------------cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceE
Confidence 3455666688999999999998775 237889999988765443322222223222 3568
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE---eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCC
Q 013827 247 QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW---AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP 323 (436)
Q Consensus 247 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~ 323 (436)
+.|+..|.. .++++++.|..|++||+..++....+. .+.+....+..+|.| .++++...|.++.++|.-++
T Consensus 600 YDm~Vdp~~-k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sg---- 673 (1080)
T KOG1408|consen 600 YDMAVDPTS-KLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSG---- 673 (1080)
T ss_pred EEeeeCCCc-ceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCc-cEEEEeecCCceEEEEeccc----
Confidence 999999998 899999999999999999988776554 356778899999987 79999999999999999998
Q ss_pred CCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 013827 324 DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 324 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~ 370 (436)
+++..+.+|...|+.+.|.+|- +.|++.+.||.|.+|.+..
T Consensus 674 -----EcvA~m~GHsE~VTG~kF~nDC-kHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 674 -----ECVAQMTGHSEAVTGVKFLNDC-KHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred -----hhhhhhcCcchheeeeeecccc-hhheeecCCceEEEEECch
Confidence 7799999999999999999998 8999999999999998854
No 126
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.3e-23 Score=172.31 Aligned_cols=245 Identities=20% Similarity=0.310 Sum_probs=185.1
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEec-CCCCcEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-KEFRNILAS 218 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~s 218 (436)
.+-|+++|+|+.|++|+|||...... ..........|.+.|..+.|. |.-++.+|+
T Consensus 22 D~~GRRmAtCSsDq~vkI~d~~~~s~-----------------------~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~ 78 (361)
T KOG2445|consen 22 DFYGRRMATCSSDQTVKIWDSTSDSG-----------------------TWSCTSSWRAHDGSIWRVVWAHPEFGQVVAT 78 (361)
T ss_pred cccCceeeeccCCCcEEEEeccCCCC-----------------------ceEEeeeEEecCCcEEEEEecCccccceEEE
Confidence 77899999999999999999753322 123333456899999999995 444579999
Q ss_pred EeCCCcEEEEeCCC---------CeEEEEEcccCCCeEEEEEcCCC-CCEEEEEECCCcEEEEecCCCCCcc--------
Q 013827 219 ASADKQVKIWDVAA---------GKCNLTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSG-------- 280 (436)
Q Consensus 219 ~~~dg~v~vwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~-------- 280 (436)
++.|+++.||.-.. -....++....+.|+++.|.|.. +-.+++++.||.++||+.-......
T Consensus 79 cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 79 CSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI 158 (361)
T ss_pred EecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence 99999999997521 12344566678899999999953 2678999999999999875432111
Q ss_pred -----ceEeeeCCeeEEEeCCC--CCcEEEEEeCC-----CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecC
Q 013827 281 -----FKWAVAADVESLAWDPH--AEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP 348 (436)
Q Consensus 281 -----~~~~~~~~i~~~~~~~~--~~~~~~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 348 (436)
....+..+..++.|+|. .+.+|++|+.+ +.+.||....... ....+.++.+|+.+|+.++|.|
T Consensus 159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r-----Kw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR-----KWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc-----eeeeehhcCCCCCcceeeeecc
Confidence 11124566789999874 23578888776 5788998765421 1234567779999999999999
Q ss_pred CCC---CEEEEEeCCCcEEEEECCCC------------------CceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCc
Q 013827 349 LVP---NLLATGSTDKMVKLWDLSNN------------------QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK 407 (436)
Q Consensus 349 ~~~---~~l~~~~~d~~i~iwd~~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 407 (436)
+-+ .+||+++.|| |+||.+... +...+..+..|.+.|+.+.|+-.|. +|++.|.||.
T Consensus 234 n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdDG~ 311 (361)
T KOG2445|consen 234 NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDDGC 311 (361)
T ss_pred ccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-EEeecCCCce
Confidence 642 4799999999 999998731 1234556788999999999999998 7999999999
Q ss_pred EEEEeCC
Q 013827 408 LEIWDTL 414 (436)
Q Consensus 408 i~iwd~~ 414 (436)
|++|...
T Consensus 312 VRLWkan 318 (361)
T KOG2445|consen 312 VRLWKAN 318 (361)
T ss_pred eeehhhh
Confidence 9999764
No 127
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.93 E-value=4.4e-24 Score=176.62 Aligned_cols=305 Identities=17% Similarity=0.273 Sum_probs=209.5
Q ss_pred CCCCccccccceecc----CCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccc-cCcCcceeecccCCCCCCCCC
Q 013827 69 DDEDSEDLEDMTINP----NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHII-IPAFPLCMAWLDCPLKDREKG 143 (436)
Q Consensus 69 ~~~~~~~v~~~~~sp----~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~ 143 (436)
.++|...|..++|++ +...+++....+ ++.+|+...+....++.....+ .+..-...+|.-- -....
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-----rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd---~~~~~ 105 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-----RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYD---SNTGN 105 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCc-----EEEEEEECCccceeeeeeccCCCCCcceEEEEEEec---CCCCC
Confidence 457778999999995 334444433333 6666666554322222221111 2222233455311 01236
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCC
Q 013827 144 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK 223 (436)
Q Consensus 144 ~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 223 (436)
.+||+|+.-|.|+|.|+.+++.... +.+|...|+.|.++|+.++++++|+.|.
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~---------------------------~~ghG~sINeik~~p~~~qlvls~SkD~ 158 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKN---------------------------YRGHGGSINEIKFHPDRPQLVLSASKDH 158 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccc---------------------------eeccCccchhhhcCCCCCcEEEEecCCc
Confidence 7899999999999999987655443 5689999999999999889999999999
Q ss_pred cEEEEeCCCCeEEEEE---cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc--------------------
Q 013827 224 QVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-------------------- 280 (436)
Q Consensus 224 ~v~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-------------------- 280 (436)
+|++|++++..++..+ .+|.+.|.++.|+++| .++++++.|.+|.+|++...+...
T Consensus 159 svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~ 237 (385)
T KOG1034|consen 159 SVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTP 237 (385)
T ss_pred eEEEEeccCCeEEEEecccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcc
Confidence 9999999999999888 5799999999999999 799999999999999997432111
Q ss_pred --------ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCC-----CCCCCCcccEEEeccCCCeEEE--E
Q 013827 281 --------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD-----PDSTSQQSSFTLHAHDKAVCTI--S 345 (436)
Q Consensus 281 --------~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~--~ 345 (436)
....|...|-++.|-- .++++-+.++.|..|........ +..........+.-....|.-+ +
T Consensus 238 ~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~ 314 (385)
T KOG1034|consen 238 KTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFA 314 (385)
T ss_pred ccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEe
Confidence 0011233344444542 57888888899999987432211 1111112233333334445544 4
Q ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCCceeEEee--CCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 346 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR--NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 346 ~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
|.|-+ .+||.|...|.|.+||++..++....++ ......|...+|+.||. +|+....|++|.-||..
T Consensus 315 ~d~~~-~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 315 FDPWQ-KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ecHHH-HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc-EEEEEeCCCcEEEEEee
Confidence 55666 7999999999999999998775322222 22345799999999999 57778899999999864
No 128
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=1.7e-24 Score=182.13 Aligned_cols=222 Identities=24% Similarity=0.381 Sum_probs=182.3
Q ss_pred cccccccccCcccceeEEEecCCC-CcEEEEEeCCCcEEEEeCCC----------------CeEEEEEcccCCCeEEEEE
Q 013827 189 KSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVKIWDVAA----------------GKCNLTLEHHTDKVQAVAW 251 (436)
Q Consensus 189 ~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~vwd~~~----------------~~~~~~~~~~~~~v~~~~~ 251 (436)
.........+|.+.++.+.-.+-+ ..+.++-+..|.|.||++.. .+++.++.+|...-+.++|
T Consensus 140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdW 219 (440)
T KOG0302|consen 140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDW 219 (440)
T ss_pred cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeec
Confidence 344445556788888888887764 34677778899999999852 2567788899999999999
Q ss_pred cCCCCCEEEEEECCCcEEEEecCCCCC---ccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 013827 252 NHHSPQILLSGSFDRSVVMKDARISTH---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQ 328 (436)
Q Consensus 252 ~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~ 328 (436)
||-....+++|..-+.|++|...++.- ...+..|...|..++|+|.....|++|+.||+|+|||+|.+..
T Consensus 220 Sp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~------- 292 (440)
T KOG0302|consen 220 SPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK------- 292 (440)
T ss_pred ccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc-------
Confidence 995545688998899999999887542 1234568999999999999889999999999999999999842
Q ss_pred cccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc-eeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCc
Q 013827 329 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK 407 (436)
Q Consensus 329 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 407 (436)
+.....+.|.+-|+.+.|+... .+||+|+.||+++|||++.-+. ..+..+..|..+|+++.|+|.....|++++.|..
T Consensus 293 ~~~~~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q 371 (440)
T KOG0302|consen 293 KAAVSTKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ 371 (440)
T ss_pred cceeEeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCc
Confidence 4445558999999999999988 4999999999999999997543 3577888899999999999987778999999999
Q ss_pred EEEEeCCCCcc
Q 013827 408 LEIWDTLSDAG 418 (436)
Q Consensus 408 i~iwd~~~~~~ 418 (436)
|.|||+.-...
T Consensus 372 itiWDlsvE~D 382 (440)
T KOG0302|consen 372 ITIWDLSVEAD 382 (440)
T ss_pred EEEEEeeccCC
Confidence 99999965443
No 129
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.4e-23 Score=172.71 Aligned_cols=241 Identities=15% Similarity=0.245 Sum_probs=187.1
Q ss_pred CCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCC--cEE
Q 013827 69 DDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKG--NFM 146 (436)
Q Consensus 69 ~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~l 146 (436)
...|...|++++.+ ++++|+|+.|. +|.+|+.....+.....+|...+ +|+.+ .+.. +.|
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDe-----tI~IYDm~k~~qlg~ll~Hagsi----taL~F-------~~~~S~shL 100 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDE-----TIHIYDMRKRKQLGILLSHAGSI----TALKF-------YPPLSKSHL 100 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCC-----cEEEEeccchhhhcceeccccce----EEEEe-------cCCcchhhe
Confidence 45688889888875 78999999998 88888877766666666664443 45555 2332 389
Q ss_pred EEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEE
Q 013827 147 AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVK 226 (436)
Q Consensus 147 ~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 226 (436)
++|+.||.|.+|++...+++ ..+.+|.+.|+.++.+|.+ .+.++.+.|+.++
T Consensus 101 lS~sdDG~i~iw~~~~W~~~---------------------------~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr 152 (362)
T KOG0294|consen 101 LSGSDDGHIIIWRVGSWELL---------------------------KSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLR 152 (362)
T ss_pred eeecCCCcEEEEEcCCeEEe---------------------------eeecccccccceeEecCCC-ceEEEEcCCceee
Confidence 99999999999999765444 3477899999999999997 5888999999999
Q ss_pred EEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEe
Q 013827 227 IWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL 306 (436)
Q Consensus 227 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 306 (436)
+||+-.|+....+. -....+.+.|+|.| .+++.+.. ..|-+|.+........ ...+..+.++.|... ..+++|.
T Consensus 153 ~WNLV~Gr~a~v~~-L~~~at~v~w~~~G-d~F~v~~~-~~i~i~q~d~A~v~~~-i~~~~r~l~~~~l~~--~~L~vG~ 226 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLN-LKNKATLVSWSPQG-DHFVVSGR-NKIDIYQLDNASVFRE-IENPKRILCATFLDG--SELLVGG 226 (362)
T ss_pred eehhhcCccceeec-cCCcceeeEEcCCC-CEEEEEec-cEEEEEecccHhHhhh-hhccccceeeeecCC--ceEEEec
Confidence 99999988766554 23344559999999 66666665 4588898876655432 222355677777653 5799999
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEe--cCCCCCEEEEEeCCCcEEEEECCCC
Q 013827 307 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY--NPLVPNLLATGSTDKMVKLWDLSNN 371 (436)
Q Consensus 307 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~~~~~d~~i~iwd~~~~ 371 (436)
+|+.|.+||.... .+...+.+|...|-.+.+ .|++ .+|++++.||.|++||++..
T Consensus 227 d~~~i~~~D~ds~---------~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 227 DNEWISLKDTDSD---------TPLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CCceEEEeccCCC---------ccceeeecchhheeeeEEEecCCc-eEEEEeccCceEEEEEcccc
Confidence 9999999999876 678899999999999984 3445 79999999999999999876
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=195.91 Aligned_cols=242 Identities=17% Similarity=0.247 Sum_probs=197.5
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
.|+|++|.+++.||.|++|+..+....... ..-+...|.+++... ++|++|
T Consensus 22 d~~gefi~tcgsdg~ir~~~~~sd~e~P~t--------------------------i~~~g~~v~~ia~~s---~~f~~~ 72 (933)
T KOG1274|consen 22 DPDGEFICTCGSDGDIRKWKTNSDEEEPET--------------------------IDISGELVSSIACYS---NHFLTG 72 (933)
T ss_pred cCCCCEEEEecCCCceEEeecCCcccCCch--------------------------hhccCceeEEEeecc---cceEEe
Confidence 789999999999999999998765322110 112777888888654 389999
Q ss_pred eCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCC
Q 013827 220 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 299 (436)
Q Consensus 220 ~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 299 (436)
+.+++|.+|.+..++.-..+....-++.+++++.+| .+++.|+.|-.|++.++.+........+|.++|.++.|+|.+
T Consensus 73 s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~- 150 (933)
T KOG1274|consen 73 SEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG- 150 (933)
T ss_pred eccceEEEeeCCCCCccceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCC-
Confidence 999999999999888766777778899999999999 899999999999999999999998899999999999999987
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEee
Q 013827 300 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 379 (436)
Q Consensus 300 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 379 (436)
+++++.+.||.|++||+.++..........+...+. ....++.++|+|++ ..++....|+.|++|+..+.+.......
T Consensus 151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~-~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~~f~Lr~ 228 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI-LSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWELQFKLRD 228 (933)
T ss_pred CEEEEEecCceEEEEEcccchhhhhcccCCcccccc-ccceeeeeeecCCC-CeEEeeccCCeEEEEccCCceeheeecc
Confidence 699999999999999999874322211111111111 14567889999998 6777778899999999999886666555
Q ss_pred CCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 380 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 380 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
..+...+..++|+|+|.| ||+++.||.|.|||+.+
T Consensus 229 ~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 229 KLSSSKFSDLQWSPNGKY-IAASTLDGQILVWNVDT 263 (933)
T ss_pred cccccceEEEEEcCCCcE-EeeeccCCcEEEEeccc
Confidence 556666999999999997 99999999999999986
No 131
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5e-24 Score=175.35 Aligned_cols=253 Identities=17% Similarity=0.272 Sum_probs=192.9
Q ss_pred cceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEE
Q 013827 127 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 206 (436)
Q Consensus 127 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 206 (436)
..|++| ++-|.+||+|+.||.|.|||+.+... -..+.+|..+|+++
T Consensus 26 a~~~~F-------s~~G~~lAvGc~nG~vvI~D~~T~~i---------------------------ar~lsaH~~pi~sl 71 (405)
T KOG1273|consen 26 AECCQF-------SRWGDYLAVGCANGRVVIYDFDTFRI---------------------------ARMLSAHVRPITSL 71 (405)
T ss_pred cceEEe-------ccCcceeeeeccCCcEEEEEccccch---------------------------hhhhhccccceeEE
Confidence 456666 89999999999999999999987443 33367899999999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEee-
Q 013827 207 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV- 285 (436)
Q Consensus 207 ~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~- 285 (436)
+|+++|+ +|+|++.|..|.+||+..|.+++.+. ..++|+...|+|...+.+++.-.+..-.+-++..+.........
T Consensus 72 ~WS~dgr-~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d 149 (405)
T KOG1273|consen 72 CWSRDGR-KLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDD 149 (405)
T ss_pred EecCCCC-EeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCc
Confidence 9999985 89999999999999999999998887 68899999999988677777766666667676653322211111
Q ss_pred ---eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccC-CCeEEEEecCCCCCEEEEEeCCC
Q 013827 286 ---AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGSTDK 361 (436)
Q Consensus 286 ---~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~d~ 361 (436)
.....+..|++.| +++++|...|.+.+||..+. +++..++... ..|..+.++..| ..|+.-+.|.
T Consensus 150 ~dln~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~---------e~vas~rits~~~IK~I~~s~~g-~~liiNtsDR 218 (405)
T KOG1273|consen 150 GDLNSSASHGVFDRRG-KYIITGTSKGKLLVYDAETL---------ECVASFRITSVQAIKQIIVSRKG-RFLIINTSDR 218 (405)
T ss_pred cccccccccccccCCC-CEEEEecCcceEEEEecchh---------eeeeeeeechheeeeEEEEeccC-cEEEEecCCc
Confidence 1223334578876 69999999999999999987 5555555444 778899999988 8999999999
Q ss_pred cEEEEECCCC-------CceeEEeeCC--CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccCC
Q 013827 362 MVKLWDLSNN-------QPSCIASRNP--KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 426 (436)
Q Consensus 362 ~i~iwd~~~~-------~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (436)
.||.|+++.- ++.....+.. ..-.-.+++|+.+|.|++++......++||.-..|..++-+-+..
T Consensus 219 vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 219 VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred eEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc
Confidence 9999998731 1111111111 122456789999999877777777889999999998876554443
No 132
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=6e-26 Score=205.65 Aligned_cols=222 Identities=25% Similarity=0.413 Sum_probs=194.9
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEe
Q 013827 141 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 220 (436)
Q Consensus 141 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 220 (436)
..++.+++|+.|-.+-+|.+...... ..+.+|..+|.++.|++.. .+|++|+
T Consensus 38 ~s~r~~~~Gg~~~k~~L~~i~kp~~i---------------------------~S~~~hespIeSl~f~~~E-~Llaags 89 (825)
T KOG0267|consen 38 KSSRSLVTGGEDEKVNLWAIGKPNAI---------------------------TSLTGHESPIESLTFDTSE-RLLAAGS 89 (825)
T ss_pred ccceeeccCCCceeeccccccCCchh---------------------------heeeccCCcceeeecCcch-hhhcccc
Confidence 45788999999999999988643222 2267899999999999984 6999999
Q ss_pred CCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCc
Q 013827 221 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 300 (436)
Q Consensus 221 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 300 (436)
.+|+|++||++..+.++++.+|...+.++.|+|-+ .++++|+.|..+.+||++...+......|...+..+.|+|+| .
T Consensus 90 asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~G-r 167 (825)
T KOG0267|consen 90 ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDG-R 167 (825)
T ss_pred cCCceeeeehhhhhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCC-c
Confidence 99999999999999999999999999999999999 888999999999999999888887777788889999999987 6
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeC
Q 013827 301 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 380 (436)
Q Consensus 301 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 380 (436)
+++.+++|..++|||+..+ +....+..|...+..+.|+|.. .++++|+.|+++++||+++.+ .+-...
T Consensus 168 ~v~~g~ed~tvki~d~~ag---------k~~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe--~I~s~~ 235 (825)
T KOG0267|consen 168 WVASGGEDNTVKIWDLTAG---------KLSKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFE--VISSGK 235 (825)
T ss_pred eeeccCCcceeeeeccccc---------ccccccccccccccccccCchh-hhhccCCCCceeeeeccceeE--EeeccC
Confidence 9999999999999999988 6688899999999999999987 899999999999999999876 444445
Q ss_pred CCCCcEEEEEEcCCCCcEEEEEeCC
Q 013827 381 PKAGAVFSVAFSEDSPFVLAIGGSK 405 (436)
Q Consensus 381 ~~~~~v~~~~~~~~~~~~l~s~~~d 405 (436)
.....|.+.+|+|++. .+++|...
T Consensus 236 ~~~~~v~~~~fn~~~~-~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETDGVRSLAFNPDGK-IVLSGEQI 259 (825)
T ss_pred CccCCceeeeecCCce-eeecCchh
Confidence 5577899999999998 57766544
No 133
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=6.4e-24 Score=173.19 Aligned_cols=216 Identities=20% Similarity=0.336 Sum_probs=171.4
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCccc--ccccccCcccceeEEEecCCCCcEEEE
Q 013827 141 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSS--IKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 141 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
..|+++++|+.||.|.|||++.....+...... +... .+....+|.-.|.++.|-|-+..++.+
T Consensus 54 tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~--------------k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 54 TEGRYMLSGGADGSIAVFDLQNATDYEASGLIA--------------KHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccceEEeecCCCccEEEEEeccccchhhcccee--------------heeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 369999999999999999998654322211110 0111 122245799999999999977779999
Q ss_pred EeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCC--CCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCC
Q 013827 219 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHS--PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 296 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~ 296 (436)
++.|.+++|||..+.+....|+ ..+.|.+-+++|-. ..++++|..|-.|++.|+..+.....+.+|...|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999999998888887 56788888898853 25788888899999999999999988999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCC-----CCC-CCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 013827 297 HAEHSFVVSLEDGTIKGFDIRTAKSD-----PDS-TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 297 ~~~~~~~~~~~dg~i~i~d~~~~~~~-----~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~ 370 (436)
..+..+++|+.||.|++||++..... ... .....+..-..|.+.++.++|..++ .++++.+.|..+++|+...
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMES 277 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc-hhhhhccCccceEEeeccc
Confidence 99999999999999999999876311 010 0112223345788999999999999 8999999999999999987
Q ss_pred CC
Q 013827 371 NQ 372 (436)
Q Consensus 371 ~~ 372 (436)
++
T Consensus 278 G~ 279 (397)
T KOG4283|consen 278 GR 279 (397)
T ss_pred Cc
Confidence 64
No 134
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=7.7e-25 Score=183.30 Aligned_cols=231 Identities=16% Similarity=0.223 Sum_probs=187.0
Q ss_pred CCCC-cEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 140 REKG-NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 140 s~~~-~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
+|.. ..+|+|+.||.|+|||+...++.. .+..|.+.|..|++... .+++
T Consensus 75 hp~~ls~~aSGs~DG~VkiWnlsqR~~~~---------------------------~f~AH~G~V~Gi~v~~~---~~~t 124 (433)
T KOG0268|consen 75 HPNKLSTVASGSCDGEVKIWNLSQRECIR---------------------------TFKAHEGLVRGICVTQT---SFFT 124 (433)
T ss_pred CcchhhhhhccccCceEEEEehhhhhhhh---------------------------eeecccCceeeEEeccc---ceEE
Confidence 5554 679999999999999998644443 36789999999999873 6889
Q ss_pred EeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCC
Q 013827 219 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA 298 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~ 298 (436)
++.|.+|+.|.++. .++.++.+ ...+..+.-+..+ ..++++++ .|.|||.+-..+.....--...+.++.|+|..
T Consensus 125 vgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE 199 (433)
T KOG0268|consen 125 VGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVE 199 (433)
T ss_pred ecCCcceeeeeccC-Ccceeeec-ccccccccccccc-ccccccCc--eeeecccccCCccceeecCCCceeEEecCCCc
Confidence 99999999999875 46666653 4556677766666 67888764 58999998777776555556779999999998
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEe
Q 013827 299 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 378 (436)
Q Consensus 299 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 378 (436)
..+|+++..|+.|.+||++.. .++..+. -...-+.++|+|.. ..+++|++|..++.||++..+. .+..
T Consensus 200 TsILas~~sDrsIvLyD~R~~---------~Pl~KVi-~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~-p~~v 267 (433)
T KOG0268|consen 200 TSILASCASDRSIVLYDLRQA---------SPLKKVI-LTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSR-PLNV 267 (433)
T ss_pred chheeeeccCCceEEEecccC---------Cccceee-eeccccceecCccc-cceeeccccccceehhhhhhcc-cchh
Confidence 889999999999999999988 4443332 23345789999965 8899999999999999997653 5566
Q ss_pred eCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 379 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 379 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
+.+|.+.|.++.|+|.|+. +++|+.|.+|+||.+..+..
T Consensus 268 ~~dhvsAV~dVdfsptG~E-fvsgsyDksIRIf~~~~~~S 306 (433)
T KOG0268|consen 268 HKDHVSAVMDVDFSPTGQE-FVSGSYDKSIRIFPVNHGHS 306 (433)
T ss_pred hcccceeEEEeccCCCcch-hccccccceEEEeecCCCcc
Confidence 7889999999999999996 99999999999999987654
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.3e-23 Score=191.61 Aligned_cols=278 Identities=15% Similarity=0.208 Sum_probs=210.5
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCC-CCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG-GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
.|.+.-+.++|.|+|..|.+++.++ .|..|+.... +.+.....+. ....++ ..++.+|++|
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg-----~ir~~~~~sd~e~P~ti~~~g----~~v~~i---------a~~s~~f~~~ 72 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDG-----DIRKWKTNSDEEEPETIDISG----ELVSSI---------ACYSNHFLTG 72 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCC-----ceEEeecCCcccCCchhhccC----ceeEEE---------eecccceEEe
Confidence 5667788999999999999999888 5666655444 2222111111 112222 3367799999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+.+++|.+|...+++...- +...+-++.+++|+-+| +++|.|+.|-.|++.+
T Consensus 73 s~~~tv~~y~fps~~~~~i---------------------------L~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~ 124 (933)
T KOG1274|consen 73 SEQNTVLRYKFPSGEEDTI---------------------------LARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLN 124 (933)
T ss_pred eccceEEEeeCCCCCccce---------------------------eeeeeccceEEEEecCC-cEEEeecCceeEEEEe
Confidence 9999999999987654322 22356789999999997 5999999999999999
Q ss_pred CCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEe--------eeCCeeEEEeCCCCCcE
Q 013827 230 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--------VAADVESLAWDPHAEHS 301 (436)
Q Consensus 230 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~ 301 (436)
+.+......+.+|.++|.++.|+|.+ .+||+.+.||.|++||+.++........ ....+..++|+|+++ .
T Consensus 125 ~~D~s~~~~lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~ 202 (933)
T KOG1274|consen 125 LDDSSQEKVLRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG-T 202 (933)
T ss_pred ccccchheeecccCCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC-e
Confidence 99999899999999999999999999 9999999999999999997765433221 245578899999985 5
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCC
Q 013827 302 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP 381 (436)
Q Consensus 302 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 381 (436)
+++...|+.|++|+...... ........+...++.+.|+|+| .|||+++.||.|.|||..+.+ . ..
T Consensus 203 la~~~~d~~Vkvy~r~~we~-------~f~Lr~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t~~---~---~~ 268 (933)
T KOG1274|consen 203 LAVPPVDNTVKVYSRKGWEL-------QFKLRDKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDTHE---R---HE 268 (933)
T ss_pred EEeeccCCeEEEEccCCcee-------heeecccccccceEEEEEcCCC-cEEeeeccCCcEEEEecccch---h---cc
Confidence 66777889999999988732 2222233445559999999998 999999999999999999843 1 22
Q ss_pred CCCcEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 013827 382 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 411 (436)
Q Consensus 382 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 411 (436)
....|.+++|.|+... +-.-...|...+|
T Consensus 269 ~~~~Vc~~aw~p~~n~-it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 269 FKRAVCCEAWKPNANA-ITLITALGTLGVS 297 (933)
T ss_pred ccceeEEEecCCCCCe-eEEEeeccccccC
Confidence 3458999999999873 4444445554444
No 136
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.5e-25 Score=203.19 Aligned_cols=211 Identities=22% Similarity=0.337 Sum_probs=190.6
Q ss_pred ccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC
Q 013827 196 KGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 275 (436)
Q Consensus 196 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 275 (436)
+..|...|.++..-..+ ..+++|+.|..+-+|.+.....+..+.+|..+|.++.|++.. .+|++|+.+|+|++||+..
T Consensus 24 ~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhceeeeeccc-eeeccCCCceeeccccccCCchhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhh
Confidence 33688889998885554 589999999999999998888888899999999999999998 8999999999999999999
Q ss_pred CCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEE
Q 013827 276 STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA 355 (436)
Q Consensus 276 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 355 (436)
.+....+.+|...+.++.|+|.+ .+++.|+.|+.+++||++.. .+...+.+|...+..+.|+|+| .+++
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~---------Gc~~~~~s~~~vv~~l~lsP~G-r~v~ 170 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKK---------GCSHTYKSHTRVVDVLRLSPDG-RWVA 170 (825)
T ss_pred hhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhcc---------CceeeecCCcceeEEEeecCCC-ceee
Confidence 98888889999999999999988 46789999999999999976 6688899999999999999999 9999
Q ss_pred EEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 356 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 356 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
.|++|..++|||...++ ....+..|.+.+..+.|+|..- ++++|+.|+++++||+++-+.+...
T Consensus 171 ~g~ed~tvki~d~~agk--~~~ef~~~e~~v~sle~hp~e~-Lla~Gs~d~tv~f~dletfe~I~s~ 234 (825)
T KOG0267|consen 171 SGGEDNTVKIWDLTAGK--LSKEFKSHEGKVQSLEFHPLEV-LLAPGSSDRTVRFWDLETFEVISSG 234 (825)
T ss_pred ccCCcceeeeecccccc--cccccccccccccccccCchhh-hhccCCCCceeeeeccceeEEeecc
Confidence 99999999999999988 5667888999999999999886 7999999999999999977766544
No 137
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.3e-22 Score=167.39 Aligned_cols=308 Identities=12% Similarity=0.132 Sum_probs=207.9
Q ss_pred CCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEE
Q 013827 69 DDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV 148 (436)
Q Consensus 69 ~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 148 (436)
..+|.+.|++|+|+.||+.||+++.|+ .|.+|+...- +...|.......+.. -+..+.|+||.+-++.
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr-----~Ir~w~~~DF----~~~eHr~~R~nve~d---hpT~V~FapDc~s~vv 149 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDR-----SIRLWDVRDF----ENKEHRCIRQNVEYD---HPTRVVFAPDCKSVVV 149 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCc-----eEEEEecchh----hhhhhhHhhccccCC---CceEEEECCCcceEEE
Confidence 357999999999999999999999997 5555554432 111222222111111 1233445888776665
Q ss_pred ee-CCCcEEEEeCCCCCCCc-ceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEE
Q 013827 149 GS-MEPAIEIWDLDVIDEVQ-PHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVK 226 (436)
Q Consensus 149 g~-~dg~i~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 226 (436)
.. ...++++|.+...+.-. +... ...--......|.-.|..+-....+ .+|++++.|..|.
T Consensus 150 ~~~~g~~l~vyk~~K~~dG~~~~~~----------------v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~ 212 (420)
T KOG2096|consen 150 SVKRGNKLCVYKLVKKTDGSGSHHF----------------VHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKIC 212 (420)
T ss_pred EEccCCEEEEEEeeecccCCCCccc----------------ccccccccchhcccceEEEeecCCc-eEEEEecCCCcEE
Confidence 54 44679999875322110 0000 0000001122466777777777664 6999999999999
Q ss_pred EEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC--------CCccceEeeeCCeeEEEeCCCC
Q 013827 227 IWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--------THSGFKWAVAADVESLAWDPHA 298 (436)
Q Consensus 227 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--------~~~~~~~~~~~~i~~~~~~~~~ 298 (436)
+|++. |+.+..+......-+..+.+|+| +++++++..--|++|.+--. .....+.+|...|..++|+++.
T Consensus 213 lw~lk-Gq~L~~idtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S 290 (420)
T KOG2096|consen 213 LWDLK-GQLLQSIDTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS 290 (420)
T ss_pred EEecC-CceeeeeccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc
Confidence 99998 88888887777778889999999 99999999999999986322 1223456899999999999976
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCccc----EEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCce
Q 013827 299 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS----FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS 374 (436)
Q Consensus 299 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~ 374 (436)
..+++.+.||++++||..-.-...+. ...+ ..+....+....+..+|.+ ..||.+ ....+.+|..++++..
T Consensus 291 -~r~vtvSkDG~wriwdtdVrY~~~qD--pk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~s-~gs~l~~~~se~g~~~ 365 (420)
T KOG2096|consen 291 -TRAVTVSKDGKWRIWDTDVRYEAGQD--PKILKEGSAPLHAAGSEPVRLELSPSG-DSLAVS-FGSDLKVFASEDGKDY 365 (420)
T ss_pred -ceeEEEecCCcEEEeeccceEecCCC--chHhhcCCcchhhcCCCceEEEeCCCC-cEEEee-cCCceEEEEcccCccc
Confidence 68999999999999997542111100 0111 2223334455689999998 666554 4557999999987642
Q ss_pred eEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 375 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 375 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
.. ....|...|.+++|+++|++ +++++ |..++++.-..
T Consensus 366 ~~-~e~~h~~~Is~is~~~~g~~-~atcG-dr~vrv~~ntp 403 (420)
T KOG2096|consen 366 PE-LEDIHSTTISSISYSSDGKY-IATCG-DRYVRVIRNTP 403 (420)
T ss_pred hh-HHHhhcCceeeEEecCCCcE-Eeeec-ceeeeeecCCC
Confidence 22 22458889999999999996 77665 67788886433
No 138
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.92 E-value=8.5e-23 Score=166.34 Aligned_cols=301 Identities=21% Similarity=0.318 Sum_probs=213.6
Q ss_pred cccccceec--cCC-ceEEEEEecCC-cceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 74 EDLEDMTIN--PND-AVIVCARNEDD-VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 74 ~~v~~~~~s--p~~-~~l~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
-.+.++.|| |+. -+||.|+...+ ...++|.-++.... .+........+..++-+.|++-....-| ++||+.
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~---e~~~~a~fd~~YP~tK~~wiPd~~g~~p--dlLATs 119 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG---ELVEDANFDHPYPVTKLMWIPDSKGVYP--DLLATS 119 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC---ceeccCCCCCCCCccceEecCCccccCc--chhhcc
Confidence 346778888 443 35666655332 22345554543333 3333333455566677888654332223 567776
Q ss_pred eCCCcEEEEeCCCCC-CCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEE
Q 013827 150 SMEPAIEIWDLDVID-EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 228 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vw 228 (436)
+ -.+|+|.+...+ .+.....+. ...-..+..++++..|+.-.++++.+.+-|-+..||
T Consensus 120 ~--D~LRlWri~~ee~~~~~~~~L~-------------------~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiW 178 (364)
T KOG0290|consen 120 S--DFLRLWRIGDEESRVELQSVLN-------------------NNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIW 178 (364)
T ss_pred c--CeEEEEeccCcCCceehhhhhc-------------------cCcccccCCcccccccccCCcceeEeecccCeEEEE
Confidence 5 589999987422 111111110 001124678999999999888899999999999999
Q ss_pred eCCCCe---EEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEee---eCCeeEEEeCCCCCcEE
Q 013827 229 DVAAGK---CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---AADVESLAWDPHAEHSF 302 (436)
Q Consensus 229 d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~ 302 (436)
|++++. ....+-.|...|..++|...+...|++.+.||.++++|+|........... ..+...++|++++.+++
T Consensus 179 die~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnym 258 (364)
T KOG0290|consen 179 DIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYM 258 (364)
T ss_pred EEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHH
Confidence 999863 355667899999999999988889999999999999999988776555543 45788999999998888
Q ss_pred EEEeC-CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc----eeEE
Q 013827 303 VVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----SCIA 377 (436)
Q Consensus 303 ~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~ 377 (436)
++-.. ...|.|.|+|.. ..++..+..|.+.|+.++|.|.....|++++.|..+.+||+..... -.+.
T Consensus 259 ATf~~dS~~V~iLDiR~P--------~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 259 ATFAMDSNKVVILDIRVP--------CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred hhhhcCCceEEEEEecCC--------CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 88654 567999999987 4778999999999999999999889999999999999999976421 1111
Q ss_pred eeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEE
Q 013827 378 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI 410 (436)
Q Consensus 378 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 410 (436)
... ..+.|+.+.|++...-.++.+. +..+.+
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 222 3558999999976544466544 344443
No 139
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.1e-23 Score=179.18 Aligned_cols=245 Identities=19% Similarity=0.265 Sum_probs=186.6
Q ss_pred CceEEEEEecCCcceeEEEEEecCCCCCCceeeecc---------------cccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 85 DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHH---------------IIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 85 ~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
|+++|.|+.+..+ .||.++....-.+.+..... ......++.+.|.. --.+.||+|
T Consensus 192 gNyvAiGtmdp~I---eIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~------~~~nVLaSg 262 (463)
T KOG0270|consen 192 GNYVAIGTMDPEI---EIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR------NFRNVLASG 262 (463)
T ss_pred cceEEEeccCcee---EEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc------ccceeEEec
Confidence 6899999998744 77776665543333333210 01111224555531 246789999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+.|.+|.+||++++++... +..|...|.+++|+|..+.+|++|+.|++|.+.|
T Consensus 263 saD~TV~lWD~~~g~p~~s---------------------------~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D 315 (463)
T KOG0270|consen 263 SADKTVKLWDVDTGKPKSS---------------------------ITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKD 315 (463)
T ss_pred CCCceEEEEEcCCCCccee---------------------------hhhcCCceeEEEecCCCceEEEeccccceEEeee
Confidence 9999999999998877654 3469999999999999889999999999999999
Q ss_pred CCCCeEE-EEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC-CCccceEeeeCCeeEEEeCCCCCcEEEEEeC
Q 013827 230 VAAGKCN-LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-THSGFKWAVAADVESLAWDPHAEHSFVVSLE 307 (436)
Q Consensus 230 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 307 (436)
.+..... ..++ ..+.|-.++|.|.....++++..||+|+-+|+|.. ++......|.++|.++++++..++++++++.
T Consensus 316 ~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~ 394 (463)
T KOG0270|consen 316 CRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAST 394 (463)
T ss_pred ccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccc
Confidence 9853222 2223 46789999999998889999999999999999987 4555667899999999999998999999999
Q ss_pred CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc
Q 013827 308 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 373 (436)
Q Consensus 308 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~ 373 (436)
|+.|++|++..... ..+..-.-.-+...|.++.|+-..+++.|+..+.++|||+.+..+
T Consensus 395 d~~Vklw~~~~~~~-------~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 395 DKVVKLWKFDVDSP-------KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred cceEEEEeecCCCC-------cccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 99999999976632 111111111234778899998878999999999999999987653
No 140
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.5e-22 Score=181.28 Aligned_cols=305 Identities=16% Similarity=0.235 Sum_probs=210.9
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeccccc-CcCcceeecccCCCCCCCCCcEEEEe
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIII-PAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
.....|.+++.+|.+..+++|+.++ .++.+....+ .+......+. .+-.+|+.| +|++..||+|
T Consensus 108 ~~gg~IWsiai~p~~~~l~IgcddG-----vl~~~s~~p~---~I~~~r~l~rq~sRvLslsw-------~~~~~~i~~G 172 (691)
T KOG2048|consen 108 SNGGAIWSIAINPENTILAIGCDDG-----VLYDFSIGPD---KITYKRSLMRQKSRVLSLSW-------NPTGTKIAGG 172 (691)
T ss_pred CCCcceeEEEeCCccceEEeecCCc-----eEEEEecCCc---eEEEEeecccccceEEEEEe-------cCCccEEEec
Confidence 4457899999999999999998886 6666766655 3333332222 255788988 8999999999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+.||.|++||+.++..+.-... .....-++..--|+++.|-.++ .|++|..-|+|.+||
T Consensus 173 s~Dg~Iriwd~~~~~t~~~~~~-------------------~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 173 SIDGVIRIWDVKSGQTLHIITM-------------------QLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWD 231 (691)
T ss_pred ccCceEEEEEcCCCceEEEeee-------------------cccccccCCceEEEEEEEeecC--cEEEecCCceEEEEc
Confidence 9999999999988776651100 0000011234568999998874 799999999999999
Q ss_pred CCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc----cceEeeeCCeeEEEeCCCCCcEEEEE
Q 013827 230 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS----GFKWAVAADVESLAWDPHAEHSFVVS 305 (436)
Q Consensus 230 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~ 305 (436)
...+..++.+..|...|.+++..+++ +.+++++.|+.|..+...+.+.. .....|...+.+++..++ .+++|
T Consensus 232 ~~~gTLiqS~~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~---~l~sg 307 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN---ALISG 307 (691)
T ss_pred ccCcchhhhhhhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc---eEEec
Confidence 99999999999999999999999998 88999999999999888766441 223356777888888763 67788
Q ss_pred eCCCcEEEEeCCCCCCCC------------------------------------------CCCCCcccEEEeccCCCeEE
Q 013827 306 LEDGTIKGFDIRTAKSDP------------------------------------------DSTSQQSSFTLHAHDKAVCT 343 (436)
Q Consensus 306 ~~dg~i~i~d~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~v~~ 343 (436)
+.|..+.+-..+..+... .........-.......|.+
T Consensus 308 G~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~ 387 (691)
T KOG2048|consen 308 GRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISC 387 (691)
T ss_pred ceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceee
Confidence 888777665554421100 00000001111122345788
Q ss_pred EEecCCCCCEEEEEeCCCcEEEEECCC------------------------------------------------CCcee
Q 013827 344 ISYNPLVPNLLATGSTDKMVKLWDLSN------------------------------------------------NQPSC 375 (436)
Q Consensus 344 ~~~~p~~~~~l~~~~~d~~i~iwd~~~------------------------------------------------~~~~~ 375 (436)
.+.+|+| ++++.+.-. .+++|.+.. .....
T Consensus 388 ~aiSPdg-~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~ke 465 (691)
T KOG2048|consen 388 AAISPDG-NLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKE 465 (691)
T ss_pred eccCCCC-CEEEEeecc-ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhh
Confidence 8999998 788877621 233333221 11000
Q ss_pred EEe--eCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 376 IAS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 376 ~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
+.. ..+....|..+..+|+|+| +|+.+..|.|.+|++++.+.
T Consensus 466 l~~~~~~~~~~~I~~l~~SsdG~y-iaa~~t~g~I~v~nl~~~~~ 509 (691)
T KOG2048|consen 466 LKSIQSQAKCPSISRLVVSSDGNY-IAAISTRGQIFVYNLETLES 509 (691)
T ss_pred hhccccccCCCcceeEEEcCCCCE-EEEEeccceEEEEEccccee
Confidence 000 1123457899999999997 77788999999999988764
No 141
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=6e-23 Score=183.91 Aligned_cols=243 Identities=15% Similarity=0.173 Sum_probs=178.2
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
-|...+|++++.|.++++||+.+.+..... .+.||...|.+++|.|.+...+++|
T Consensus 109 apge~~lVsasGDsT~r~Wdvk~s~l~G~~-------------------------~~~GH~~SvkS~cf~~~n~~vF~tG 163 (720)
T KOG0321|consen 109 APGESLLVSASGDSTIRPWDVKTSRLVGGR-------------------------LNLGHTGSVKSECFMPTNPAVFCTG 163 (720)
T ss_pred CCCceeEEEccCCceeeeeeeccceeecce-------------------------eecccccccchhhhccCCCcceeec
Confidence 677888999999999999999876665432 2448999999999999988899999
Q ss_pred eCCCcEEEEeCCCCe--------------------E-------EEEEcccCCCeEE---EEEcCCCCCEEEEEEC-CCcE
Q 013827 220 SADKQVKIWDVAAGK--------------------C-------NLTLEHHTDKVQA---VAWNHHSPQILLSGSF-DRSV 268 (436)
Q Consensus 220 ~~dg~v~vwd~~~~~--------------------~-------~~~~~~~~~~v~~---~~~~~~~~~~l~s~~~-d~~i 268 (436)
+.||.|.|||++... . +..-..+...|.+ +.+..|. ..|++++. |+.|
T Consensus 164 gRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~i 242 (720)
T KOG0321|consen 164 GRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTI 242 (720)
T ss_pred cCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcce
Confidence 999999999986321 0 1111234444554 5555666 67888887 9999
Q ss_pred EEEecCCCCCccce--------Eee---eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEecc
Q 013827 269 VMKDARISTHSGFK--------WAV---AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH 337 (436)
Q Consensus 269 ~~wd~~~~~~~~~~--------~~~---~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 337 (436)
++||++........ ..+ ...+.++..+..|.+++|.+ .|+.|++|+++.... .++..+.++
T Consensus 243 KVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC-tD~sIy~ynm~s~s~-------sP~~~~sg~ 314 (720)
T KOG0321|consen 243 KVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC-TDNSIYFYNMRSLSI-------SPVAEFSGK 314 (720)
T ss_pred EEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe-cCCcEEEEeccccCc-------CchhhccCc
Confidence 99999976543211 111 33577788888776555555 599999999998743 444444444
Q ss_pred CCC--eEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 338 DKA--VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 338 ~~~--v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
... -..-..+|++ .+|++|+.|...++|.+.+.+. ....+.+|.-.|++++|.|..-.=+++++.|..++||++..
T Consensus 315 ~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~e~-~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 315 LNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSPEA-PPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred ccceeeeeeecCCCC-ceEeccCCCcceeeeeecCccC-ChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 322 1223467888 8999999999999999998764 44456789999999999885433478889999999999966
Q ss_pred Ccc
Q 013827 416 DAG 418 (436)
Q Consensus 416 ~~~ 418 (436)
+-.
T Consensus 393 ~l~ 395 (720)
T KOG0321|consen 393 GLE 395 (720)
T ss_pred chh
Confidence 543
No 142
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=1.6e-23 Score=189.20 Aligned_cols=225 Identities=17% Similarity=0.248 Sum_probs=189.8
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeE-EEecCCCCcEEEEEe
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASAS 220 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~ 220 (436)
++..+++++.||++++|+-...+-+. .+.+.+|.+-|.. +++-+..+..+++|+
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~~~~l~-------------------------~~~~~~~~g~i~~~i~y~e~~~~~l~~g~ 78 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKGKQYLE-------------------------THAFEGPKGFIANSICYAESDKGRLVVGG 78 (745)
T ss_pred CCeEEeecCCCCceeeeeccCccccc-------------------------ceecccCcceeeccceeccccCcceEeec
Confidence 45679999999999999875433322 2335567777777 888764344799999
Q ss_pred CCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCc
Q 013827 221 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 300 (436)
Q Consensus 221 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 300 (436)
.|.++.+|......+...+++|...|.+++...++ . +++||.|.++++|-.... .....+|+..|.++..-|.+
T Consensus 79 ~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~l--~~~l~gH~asVWAv~~l~e~-- 152 (745)
T KOG0301|consen 79 MDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGEL--VYSLQGHTASVWAVASLPEN-- 152 (745)
T ss_pred ccceEEEEecCCCCchhhhhccccceeeeecCCcC-c-eEecccccceEEecchhh--hcccCCcchheeeeeecCCC--
Confidence 99999999999999999999999999999988877 4 999999999999977543 33367899999999999965
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeC
Q 013827 301 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 380 (436)
Q Consensus 301 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 380 (436)
.+++|+.|.+|++|.-. ..+.++.+|...|..+++-+++ .+++++.||.|++|++ +++ ++....
T Consensus 153 ~~vTgsaDKtIklWk~~-----------~~l~tf~gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~-~ge--~l~~~~ 216 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWKGG-----------TLLKTFSGHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDL-DGE--VLLEMH 216 (745)
T ss_pred cEEeccCcceeeeccCC-----------chhhhhccchhheeeeEEecCC--CeEeecCCceEEEEec-cCc--eeeeee
Confidence 79999999999999875 4488999999999999999964 6889999999999999 444 677889
Q ss_pred CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 381 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 381 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
+|...|.++....++. ++++++.|++++||+..
T Consensus 217 ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 217 GHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ccceEEEEEEecCCCC-eEEEecCCceEEEeecC
Confidence 9999999999666666 69999999999999987
No 143
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=7.3e-23 Score=176.54 Aligned_cols=259 Identities=17% Similarity=0.257 Sum_probs=197.4
Q ss_pred cceeecccCCCCCCCC--CcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCccccee
Q 013827 127 PLCMAWLDCPLKDREK--GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL 204 (436)
Q Consensus 127 ~~~~~~~~~~~~~s~~--~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 204 (436)
.+|++| +|. -+++|+|..-|+|-+||+.+.+... ...+.+..|..+|.
T Consensus 189 it~l~f-------HPt~~~~lva~GdK~G~VG~Wn~~~~~~d~-----------------------d~v~~f~~hs~~Vs 238 (498)
T KOG4328|consen 189 ITSLAF-------HPTENRKLVAVGDKGGQVGLWNFGTQEKDK-----------------------DGVYLFTPHSGPVS 238 (498)
T ss_pred eEEEEe-------cccCcceEEEEccCCCcEEEEecCCCCCcc-----------------------CceEEeccCCcccc
Confidence 467777 554 3688999999999999997444332 23334668999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEE--EEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc-cc
Q 013827 205 GLAWNKEFRNILASASADKQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GF 281 (436)
Q Consensus 205 ~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~ 281 (436)
+|.|+|.....+++.+.||+|++-|++.+.... .+......+.++.|+.+. ..++.+..=|...+||+++.... ..
T Consensus 239 ~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~~~~ 317 (498)
T KOG4328|consen 239 GLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSEYEN 317 (498)
T ss_pred ceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCccchh
Confidence 999999888899999999999999998764333 333245567788888887 55666766679999999988763 33
Q ss_pred eEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCC
Q 013827 282 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK 361 (436)
Q Consensus 282 ~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~ 361 (436)
..-|...|.+++++|..+.++++++.|++++|||+|...... .+......|...|.+..|+|.+. .|++.+.|.
T Consensus 318 ~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~-----sp~lst~~HrrsV~sAyFSPs~g-tl~TT~~D~ 391 (498)
T KOG4328|consen 318 LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA-----SPFLSTLPHRRSVNSAYFSPSGG-TLLTTCQDN 391 (498)
T ss_pred hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC-----CcceecccccceeeeeEEcCCCC-ceEeeccCC
Confidence 445677999999999999999999999999999999874322 13455667999999999999995 499999999
Q ss_pred cEEEEECC----CCCceeEEeeCCCC-C--cEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccc
Q 013827 362 MVKLWDLS----NNQPSCIASRNPKA-G--AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 423 (436)
Q Consensus 362 ~i~iwd~~----~~~~~~~~~~~~~~-~--~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (436)
.|+|||.. ...+.....+.... . ......|.|+.. ++++|-.-..|-|+|-..++.+.+..
T Consensus 392 ~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~~q~v~el~ 459 (498)
T KOG4328|consen 392 EIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNGGQMVCELH 459 (498)
T ss_pred ceEEeecccccccCCccceeeccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCCCCEEeeecc
Confidence 99999984 22322222222111 1 244568999988 68889999999999999888666543
No 144
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.5e-23 Score=164.50 Aligned_cols=255 Identities=20% Similarity=0.274 Sum_probs=195.0
Q ss_pred CCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCC---CceeeecccccCcCcceeecccCCCCCCC-CCc
Q 013827 69 DDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD---PNLYVHHHIIIPAFPLCMAWLDCPLKDRE-KGN 144 (436)
Q Consensus 69 ~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~ 144 (436)
+..|++.|.+++..=.|+.||+++.|+ .|.+++...... ...+..|..+ +.-++|. +| -|.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~-----tVkIf~v~~n~~s~ll~~L~Gh~GP----Vwqv~wa------hPk~G~ 71 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDG-----TVKIFEVRNNGQSKLLAELTGHSGP----VWKVAWA------HPKFGT 71 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCc-----cEEEEEEcCCCCceeeeEecCCCCC----eeEEeec------ccccCc
Confidence 457899999999999999999999997 666666554432 2233444433 3567774 33 599
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCC-CcEEEEEeCCC
Q 013827 145 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADK 223 (436)
Q Consensus 145 ~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg 223 (436)
+||+++.||.|.||.-..++ ....+....|...|++++|.|.+ ...|++++.||
T Consensus 72 iLAScsYDgkVIiWke~~g~-------------------------w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG 126 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENGR-------------------------WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDG 126 (299)
T ss_pred EeeEeecCceEEEEecCCCc-------------------------hhhhhhhhhhcccceeecccccccceEEEEeeCCC
Confidence 99999999999999976542 23334456899999999999973 24789999999
Q ss_pred cEEEEeCCCC---eEEEEEcccCCCeEEEEEcCC---C----------CCEEEEEECCCcEEEEecCCCCC--ccceEee
Q 013827 224 QVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHH---S----------PQILLSGSFDRSVVMKDARISTH--SGFKWAV 285 (436)
Q Consensus 224 ~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~---~----------~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~ 285 (436)
.|.|.+.+.. ...+....|.-.|++++|.|. | ...|++|+.|..|++|+.....- ...+..|
T Consensus 127 ~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H 206 (299)
T KOG1332|consen 127 KVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGH 206 (299)
T ss_pred cEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhc
Confidence 9999998754 223445779999999999986 2 14599999999999999987532 2336689
Q ss_pred eCCeeEEEeCCCC---CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCc
Q 013827 286 AADVESLAWDPHA---EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM 362 (436)
Q Consensus 286 ~~~i~~~~~~~~~---~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~ 362 (436)
.+.++.++|.|.- ...+++++.||++.||..+..... -....++.....+..+.|++.| ++|++++.|+.
T Consensus 207 ~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~------wk~tll~~f~~~~w~vSWS~sG-n~LaVs~GdNk 279 (299)
T KOG1332|consen 207 KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP------WKKTLLEEFPDVVWRVSWSLSG-NILAVSGGDNK 279 (299)
T ss_pred chhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc------ccccccccCCcceEEEEEeccc-cEEEEecCCcE
Confidence 9999999999963 357999999999999988743211 1123344467789999999999 99999999999
Q ss_pred EEEEECCC
Q 013827 363 VKLWDLSN 370 (436)
Q Consensus 363 i~iwd~~~ 370 (436)
|.+|.-..
T Consensus 280 vtlwke~~ 287 (299)
T KOG1332|consen 280 VTLWKENV 287 (299)
T ss_pred EEEEEeCC
Confidence 99997654
No 145
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=1.6e-21 Score=175.19 Aligned_cols=281 Identities=13% Similarity=0.106 Sum_probs=184.1
Q ss_pred cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEE-EEecCCcceeEEEEEecCC
Q 013827 31 NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVC-ARNEDDVSHLEVYILEESD 109 (436)
Q Consensus 31 ~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~~~~~~~~~v~~~~~~~ 109 (436)
+.|+++.+|++...+... .. .....+..++|+|+++.+++ +..++ .+++|+...
T Consensus 8 ~~d~~v~~~d~~t~~~~~-----------------~~---~~~~~~~~l~~~~dg~~l~~~~~~~~-----~v~~~d~~~ 62 (300)
T TIGR03866 8 EKDNTISVIDTATLEVTR-----------------TF---PVGQRPRGITLSKDGKLLYVCASDSD-----TIQVIDLAT 62 (300)
T ss_pred cCCCEEEEEECCCCceEE-----------------EE---ECCCCCCceEECCCCCEEEEEECCCC-----eEEEEECCC
Confidence 678999999886544321 00 01123667999999997754 44444 677888765
Q ss_pred CCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe-eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCC
Q 013827 110 GGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG-SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGK 188 (436)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (436)
.+....+. ....+..+.| +|+++.++++ +.++.|++||+.+.+.+..
T Consensus 63 ~~~~~~~~-----~~~~~~~~~~-------~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~-------------------- 110 (300)
T TIGR03866 63 GEVIGTLP-----SGPDPELFAL-------HPNGKILYIANEDDNLVTVIDIETRKVLAE-------------------- 110 (300)
T ss_pred CcEEEecc-----CCCCccEEEE-------CCCCCEEEEEcCCCCeEEEEECCCCeEEeE--------------------
Confidence 42211111 1111233444 8899877654 5689999999976433221
Q ss_pred cccccccccCcccceeEEEecCCCCcEEEEEeCCC-cEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEE-EEEECCC
Q 013827 189 KSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK-QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQIL-LSGSFDR 266 (436)
Q Consensus 189 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg-~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d~ 266 (436)
+ .+...+.+++|+|+| .++++++.++ .+.+||..+++....+. ....+..++|+|++ ..+ +++..++
T Consensus 111 -------~-~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~ 179 (300)
T TIGR03866 111 -------I-PVGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADG-KELWVSSEIGG 179 (300)
T ss_pred -------e-eCCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCC-CEEEEEcCCCC
Confidence 1 122346789999997 4777777665 57788998887765553 23456789999999 555 5555799
Q ss_pred cEEEEecCCCCCccceEee-------eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCC
Q 013827 267 SVVMKDARISTHSGFKWAV-------AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK 339 (436)
Q Consensus 267 ~i~~wd~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 339 (436)
.|.+||+++.+........ ......++|+|++...+++...++.+.+||+++. +....+ .+..
T Consensus 180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~---------~~~~~~-~~~~ 249 (300)
T TIGR03866 180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY---------EVLDYL-LVGQ 249 (300)
T ss_pred EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC---------cEEEEE-EeCC
Confidence 9999999987654322211 1124568899988655565666778999999876 323333 3445
Q ss_pred CeEEEEecCCCCCEEEEE-eCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcC
Q 013827 340 AVCTISYNPLVPNLLATG-STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 393 (436)
Q Consensus 340 ~v~~~~~~p~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 393 (436)
.+.+++|+|++ .+|+++ +.++.|++||+.+++. +..+... ...+.++++|
T Consensus 250 ~~~~~~~~~~g-~~l~~~~~~~~~i~v~d~~~~~~--~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 250 RVWQLAFTPDE-KYLLTTNGVSNDVSVIDVAALKV--IKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CcceEEECCCC-CEEEEEcCCCCeEEEEECCCCcE--EEEEEcc-cccceeEeCC
Confidence 78899999999 677665 5689999999999884 3333333 3458888765
No 146
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.1e-22 Score=177.00 Aligned_cols=273 Identities=19% Similarity=0.239 Sum_probs=198.4
Q ss_pred EEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCc-EEEEeeCCCcEEEEeCCCCCCCcceeeecccchhh
Q 013827 101 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEK 179 (436)
Q Consensus 101 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 179 (436)
++.+|+.........+.++..+-. ...+.| +.... .+|+.+.|..|++|.-......-
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~~pg--~~s~~w-------~~~n~lvvas~~gdk~~~~~~K~g~~~~V------------ 71 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTAEPG--DFSFNW-------QRRNFLVVASMAGDKVMRIKEKDGKTPEV------------ 71 (673)
T ss_pred ceEEeecccccCccccccCCCCCc--ceeeec-------cccceEEEeecCCceeEEEecccCCCCcc------------
Confidence 444555444433455565543322 345666 33332 23444577889999754321111
Q ss_pred hhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEE
Q 013827 180 KKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQIL 259 (436)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 259 (436)
.....+.+. .-.|++..... .++++|+..+.|+|||++...+.+.+++|++.|+++.++... .+|
T Consensus 72 -----------p~~~k~~gd--~~~Cv~~~s~S-~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D-eyi 136 (673)
T KOG4378|consen 72 -----------PRVRKLTGD--NAFCVACASQS-LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD-EYI 136 (673)
T ss_pred -----------ceeeccccc--hHHHHhhhhcc-eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc-cee
Confidence 111112222 33444444442 589999999999999999877888889999999999999988 899
Q ss_pred EEEECCCcEEEEecCCCCCccceEee-eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccC
Q 013827 260 LSGSFDRSVVMKDARISTHSGFKWAV-AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD 338 (436)
Q Consensus 260 ~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 338 (436)
++++..|.|.+..+.+......+... ...+.-+.++|....++.+++++|.|.+||+.... ........|.
T Consensus 137 Asvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s--------p~~~~~~~Hs 208 (673)
T KOG4378|consen 137 ASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS--------PIFHASEAHS 208 (673)
T ss_pred EEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC--------cccchhhhcc
Confidence 99999999999999887766533333 34566899999888889999999999999998762 2234456799
Q ss_pred CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 339 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 339 ~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
.+...++|+|..+.+|++.+.|..|.+||.+.......... ..+...++|+++|.+ |+.|...|.|..||++..+.
T Consensus 209 AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~-L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 209 APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTY-LCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred CCcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceE-EEeecCCceEEEEecccCCC
Confidence 99999999999989999999999999999997663222222 348899999999985 88899999999999987665
Q ss_pred ccc
Q 013827 419 ISN 421 (436)
Q Consensus 419 ~~~ 421 (436)
.-.
T Consensus 285 Pv~ 287 (673)
T KOG4378|consen 285 PVA 287 (673)
T ss_pred Cce
Confidence 433
No 147
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=7.7e-22 Score=162.06 Aligned_cols=267 Identities=18% Similarity=0.301 Sum_probs=189.1
Q ss_pred CCCCccccccceeccCCceEEEEEecCCcceeEEEEEec--CCCC--CCceeeecccccCcCcceeecccCCCCCCCC-C
Q 013827 69 DDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEE--SDGG--DPNLYVHHHIIIPAFPLCMAWLDCPLKDREK-G 143 (436)
Q Consensus 69 ~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~ 143 (436)
..+|.+-|.++.|.+.|+.+|+++.+. ++.+|+. ..+. ...-...|... ...+.|. +|. |
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq-----~vkI~d~~~~s~~W~~Ts~Wrah~~S----i~rV~WA------hPEfG 73 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQ-----TVKIWDSTSDSGTWSCTSSWRAHDGS----IWRVVWA------HPEFG 73 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCC-----cEEEEeccCCCCceEEeeeEEecCCc----EEEEEec------Ccccc
Confidence 347889999999999999999999887 5556653 2220 11122333322 3567774 443 9
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCC-CcEEEEEeCC
Q 013827 144 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASAD 222 (436)
Q Consensus 144 ~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~d 222 (436)
+.+|+++.|+++.||.-...... ...+.......+......|+++.|.|.. .-.||+++.|
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~------------------~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aD 135 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEE------------------AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASAD 135 (361)
T ss_pred ceEEEEecCCceeeeeecccccc------------------cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccC
Confidence 99999999999999986421111 1123344555666788899999999962 2479999999
Q ss_pred CcEEEEeCCCCe------EEEEEc-------ccCCCeEEEEEcCCC--CCEEEEEECC-----CcEEEEecCCCC----C
Q 013827 223 KQVKIWDVAAGK------CNLTLE-------HHTDKVQAVAWNHHS--PQILLSGSFD-----RSVVMKDARIST----H 278 (436)
Q Consensus 223 g~v~vwd~~~~~------~~~~~~-------~~~~~v~~~~~~~~~--~~~l~s~~~d-----~~i~~wd~~~~~----~ 278 (436)
|.+|||+....- ....++ .+..+..|+.|+|.. ..+|+.|+.+ +.+.||...... .
T Consensus 136 G~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k 215 (361)
T KOG2445|consen 136 GILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLK 215 (361)
T ss_pred cEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeee
Confidence 999999875432 122222 356778899999743 2467777765 478888766543 2
Q ss_pred ccceEeeeCCeeEEEeCCCCC---cEEEEEeCCCcEEEEeCCCCCC-----------CCCCCCCcccEEEeccCCCeEEE
Q 013827 279 SGFKWAVAADVESLAWDPHAE---HSFVVSLEDGTIKGFDIRTAKS-----------DPDSTSQQSSFTLHAHDKAVCTI 344 (436)
Q Consensus 279 ~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~ 344 (436)
+..+..+..+|+.++|.|.-+ .++++++.|| |+||.++.... .......+.+..+..|++.|..+
T Consensus 216 va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv 294 (361)
T KOG2445|consen 216 VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRV 294 (361)
T ss_pred ehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEE
Confidence 334557899999999999643 4789999999 99999985321 01111223455678899999999
Q ss_pred EecCCCCCEEEEEeCCCcEEEEECCC
Q 013827 345 SYNPLVPNLLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 345 ~~~p~~~~~l~~~~~d~~i~iwd~~~ 370 (436)
.|+-.| ..|++.+.||.|++|...-
T Consensus 295 ~wNmtG-tiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 295 RWNMTG-TILSSTGDDGCVRLWKANY 319 (361)
T ss_pred EEeeee-eEEeecCCCceeeehhhhh
Confidence 999998 8999999999999997754
No 148
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=7.4e-23 Score=178.43 Aligned_cols=268 Identities=15% Similarity=0.208 Sum_probs=203.8
Q ss_pred eccCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEEecCCcceeEEEEEecC
Q 013827 29 ISNASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEES 108 (436)
Q Consensus 29 ~~~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~ 108 (436)
+.+.-+-+.||++....- .-|...+....-+..|.++.++|||+.|++|+... .+.+|+..
T Consensus 435 yTgGkgcVKVWdis~pg~--------------k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeas-----tlsiWDLA 495 (705)
T KOG0639|consen 435 YTGGKGCVKVWDISQPGN--------------KSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAS-----TLSIWDLA 495 (705)
T ss_pred EecCCCeEEEeeccCCCC--------------CCccccccccCcccceeeeEecCCCceEEeccccc-----eeeeeecc
Confidence 336667799998865521 12333333333456799999999999999997643 44455444
Q ss_pred CCCCCceeeecccccCc-CcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCC
Q 013827 109 DGGDPNLYVHHHIIIPA-FPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKG 187 (436)
Q Consensus 109 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (436)
.. ......+ +++ .+.| ++++.+||.++.+++..||.|.|||+...
T Consensus 496 ap---Tprikae--ltssapaC-----yALa~spDakvcFsccsdGnI~vwDLhnq------------------------ 541 (705)
T KOG0639|consen 496 AP---TPRIKAE--LTSSAPAC-----YALAISPDAKVCFSCCSDGNIAVWDLHNQ------------------------ 541 (705)
T ss_pred CC---Ccchhhh--cCCcchhh-----hhhhcCCccceeeeeccCCcEEEEEcccc------------------------
Confidence 32 1111111 111 1223 34455999999999999999999999754
Q ss_pred CcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCc
Q 013827 188 KKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS 267 (436)
Q Consensus 188 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 267 (436)
.++..+.+|.+.+.||..+++| ..|-+|+-|.+||-||+++++.+.... ..+.|.++.++|++ ..++.|-.++.
T Consensus 542 ---~~VrqfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~-dWlavGMens~ 615 (705)
T KOG0639|consen 542 ---TLVRQFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTG-DWLAVGMENSN 615 (705)
T ss_pred ---eeeecccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCc-cceeeecccCc
Confidence 3444588999999999999997 589999999999999999987766554 56889999999999 89999999999
Q ss_pred EEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEec
Q 013827 268 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN 347 (436)
Q Consensus 268 i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 347 (436)
+.+.......... +..|.+.|.++.|.+.| +++++.+.|..+..|...-+ ..++..+ ....|.+..++
T Consensus 616 vevlh~skp~kyq-lhlheScVLSlKFa~cG-kwfvStGkDnlLnawrtPyG---------asiFqsk-E~SsVlsCDIS 683 (705)
T KOG0639|consen 616 VEVLHTSKPEKYQ-LHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYG---------ASIFQSK-ESSSVLSCDIS 683 (705)
T ss_pred EEEEecCCcccee-ecccccEEEEEEecccC-ceeeecCchhhhhhccCccc---------cceeecc-ccCcceeeeec
Confidence 9888776655544 56788999999999988 69999999999999998876 3344333 45778999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEC
Q 013827 348 PLVPNLLATGSTDKMVKLWDL 368 (436)
Q Consensus 348 p~~~~~l~~~~~d~~i~iwd~ 368 (436)
.+. .+++||+.|....+|.+
T Consensus 684 ~dd-kyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 684 FDD-KYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCc-eEEEecCCCcceEEEEE
Confidence 988 99999999998888864
No 149
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=3.8e-22 Score=178.81 Aligned_cols=259 Identities=19% Similarity=0.232 Sum_probs=184.8
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEe
Q 013827 141 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 220 (436)
Q Consensus 141 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 220 (436)
.....||.+.+||.|.++|........ ..........|...|..+.|.| |...|++++
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr~---------------------ee~~lk~~~aH~nAifDl~wap-ge~~lVsas 119 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFRL---------------------EERQLKKPLAHKNAIFDLKWAP-GESLLVSAS 119 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcch---------------------hhhhhcccccccceeEeeccCC-CceeEEEcc
Confidence 356789999999999999986432220 1111233457999999999999 578999999
Q ss_pred CCCcEEEEeCCCCeEEEE--EcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc------------------
Q 013827 221 ADKQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG------------------ 280 (436)
Q Consensus 221 ~dg~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~------------------ 280 (436)
.|.++++||+++.+.+.. +.+|...|.+++|.|.++..|++|+.||.|.|||++....-.
T Consensus 120 GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred CCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 999999999999988766 889999999999999998999999999999999997443100
Q ss_pred ---------ceEeee----CCeeEEEeCCCCCcEEEEEeC-CCcEEEEeCCCCCCCCCCCCCcccEEEecc---CCCeEE
Q 013827 281 ---------FKWAVA----ADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAH---DKAVCT 343 (436)
Q Consensus 281 ---------~~~~~~----~~i~~~~~~~~~~~~~~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~---~~~v~~ 343 (436)
.-..+. +.|+.+.|- |. ..|++++. |+.|++||+++......... .....+..| ...+.+
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~fk-De-~tlaSaga~D~~iKVWDLRk~~~~~r~ep-~~~~~~~t~skrs~G~~n 276 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLFK-DE-STLASAGAADSTIKVWDLRKNYTAYRQEP-RGSDKYPTHSKRSVGQVN 276 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEEe-cc-ceeeeccCCCcceEEEeecccccccccCC-CcccCccCcccceeeeEE
Confidence 000111 224445444 34 56777666 99999999998754332111 112222233 345778
Q ss_pred EEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCC--cEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 344 ISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG--AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 344 ~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
+.....| .+|.+.+.|+.|++|++.+.....+..+.++.. .-..-..+|++.+ +++|+.|...++|.+.+.+.-..
T Consensus 277 L~lDssG-t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~-l~SgSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 277 LILDSSG-TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS-LLSGSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred EEecCCC-CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce-EeccCCCcceeeeeecCccCChh
Confidence 8888888 555555559999999999866545555554422 2233457899996 89999999999999998876555
Q ss_pred cccCC
Q 013827 422 RFSKY 426 (436)
Q Consensus 422 ~~~~~ 426 (436)
.+..+
T Consensus 355 ~l~Gh 359 (720)
T KOG0321|consen 355 LLLGH 359 (720)
T ss_pred hhhCc
Confidence 44443
No 150
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.6e-21 Score=173.14 Aligned_cols=284 Identities=18% Similarity=0.217 Sum_probs=219.3
Q ss_pred ccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCC
Q 013827 73 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME 152 (436)
Q Consensus 73 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 152 (436)
..+|.+|||+.+.+.||++..++ .|-+|+....-......+- +...-.-.++| + ++.+|.+.+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g-----~IEiwN~~~~w~~~~vi~g--~~drsIE~L~W-------~-e~~RLFS~g~s 89 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDG-----NIEIWNLSNNWFLEPVIHG--PEDRSIESLAW-------A-EGGRLFSSGLS 89 (691)
T ss_pred ccceEEEEEeccCCceeeeccCC-----cEEEEccCCCceeeEEEec--CCCCceeeEEE-------c-cCCeEEeecCC
Confidence 35699999999999999998887 5666665553222222211 22223346777 3 56678888899
Q ss_pred CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 153 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 232 (436)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~ 232 (436)
|.|.-||+.+.+.... +....+.|++++.+|.+ ..++.|+.||.+..++...
T Consensus 90 g~i~EwDl~~lk~~~~---------------------------~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p 141 (691)
T KOG2048|consen 90 GSITEWDLHTLKQKYN---------------------------IDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGP 141 (691)
T ss_pred ceEEEEecccCceeEE---------------------------ecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCC
Confidence 9999999987555433 44567899999999995 6899999999888888777
Q ss_pred CeEE--EEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE----e----eeCCeeEEEeCCCCCcEE
Q 013827 233 GKCN--LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----A----VAADVESLAWDPHAEHSF 302 (436)
Q Consensus 233 ~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~----~----~~~~i~~~~~~~~~~~~~ 302 (436)
++.. ..+....+.|.+++|+|++ ..+++|+.||.|++||...+....... . ...-|.++.+-.++ .+
T Consensus 142 ~~I~~~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI 218 (691)
T KOG2048|consen 142 DKITYKRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TI 218 (691)
T ss_pred ceEEEEeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--cE
Confidence 6543 3445557899999999999 889999999999999998776544111 1 22347788887654 79
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc--eeEEeeC
Q 013827 303 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP--SCIASRN 380 (436)
Q Consensus 303 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~ 380 (436)
++|...|+|.+||...+ ..+.....|...|.+++..+++ ..+.+++.|+.|..|...+... .......
T Consensus 219 ~sgDS~G~V~FWd~~~g---------TLiqS~~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~ 288 (691)
T KOG2048|consen 219 ASGDSAGTVTFWDSIFG---------TLIQSHSCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKSEWVINSRRD 288 (691)
T ss_pred EEecCCceEEEEcccCc---------chhhhhhhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCccceeeecccc
Confidence 99999999999999988 6688888999999999999988 8999999999999998877643 2333456
Q ss_pred CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 381 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 381 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
.|...|.+++..++ .+++|+.|..+.+-....
T Consensus 289 ~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 289 LHAHDVRSMAVIEN---ALISGGRDFTLAICSSRE 320 (691)
T ss_pred CCcccceeeeeecc---eEEecceeeEEEEccccc
Confidence 67888999999988 588899999998876655
No 151
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=2e-21 Score=158.24 Aligned_cols=208 Identities=20% Similarity=0.339 Sum_probs=167.6
Q ss_pred CcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeE-EEEE-----cccCCCeEEEEEcCCCCCEEEEEECCCcEEEE
Q 013827 198 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NLTL-----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMK 271 (436)
Q Consensus 198 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~w 271 (436)
.+-+.|.|+.|.|++ ..+++-. |..|.+|+++.+.. +..+ .++....++-+|+|......+....|+++..|
T Consensus 121 eavg~i~cvew~Pns-~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNS-DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCCC-CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEE
Confidence 456689999999986 4666655 78999999987755 3333 23566788899999332334445669999999
Q ss_pred ecCCCCCccc-eEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC
Q 013827 272 DARISTHSGF-KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 350 (436)
Q Consensus 272 d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 350 (436)
|+|+...... ...|...+..+.|+|+-..+++++++||.|+|||.|+. ..++..+.+|...|.++.|+|..
T Consensus 199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--------k~pv~el~~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--------KFPVQELPGHSHWVWAVRFNPEH 270 (370)
T ss_pred EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--------CccccccCCCceEEEEEEecCcc
Confidence 9998776543 34677889999999998889999999999999999987 37789999999999999999988
Q ss_pred CCEEEEEeCCCcEEEEECCCCC------------------------c---eeEEeeCCCCCcEEEEEEcCCCCcEEEEEe
Q 013827 351 PNLLATGSTDKMVKLWDLSNNQ------------------------P---SCIASRNPKAGAVFSVAFSEDSPFVLAIGG 403 (436)
Q Consensus 351 ~~~l~~~~~d~~i~iwd~~~~~------------------------~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 403 (436)
..++++|+.|..|.+|-...-. + -.+.++..|...|++++|+.-.++++|+-+
T Consensus 271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS 350 (370)
T KOG1007|consen 271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS 350 (370)
T ss_pred ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec
Confidence 7899999999999999653210 0 123456778999999999999999999999
Q ss_pred CCCcEEEEeCCC
Q 013827 404 SKGKLEIWDTLS 415 (436)
Q Consensus 404 ~dg~i~iwd~~~ 415 (436)
.||.+.|=.+..
T Consensus 351 YDGRviIs~V~r 362 (370)
T KOG1007|consen 351 YDGRVIISSVPR 362 (370)
T ss_pred cCceEEeecCCh
Confidence 999998876653
No 152
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.6e-21 Score=160.88 Aligned_cols=252 Identities=14% Similarity=0.197 Sum_probs=181.0
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
+.||++||+++.|++|+||+++..+..+. ..++..+. -+..+.+.|.||...+++++
T Consensus 95 sSdGK~lat~~~Dr~Ir~w~~~DF~~~eH---------------------r~~R~nve--~dhpT~V~FapDc~s~vv~~ 151 (420)
T KOG2096|consen 95 SSDGKKLATISGDRSIRLWDVRDFENKEH---------------------RCIRQNVE--YDHPTRVVFAPDCKSVVVSV 151 (420)
T ss_pred cCCCceeEEEeCCceEEEEecchhhhhhh---------------------hHhhcccc--CCCceEEEECCCcceEEEEE
Confidence 89999999999999999999986433221 11111111 12467889999988788888
Q ss_pred eCCCcEEEEeCCCCe---EE---------EEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeC
Q 013827 220 SADKQVKIWDVAAGK---CN---------LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA 287 (436)
Q Consensus 220 ~~dg~v~vwd~~~~~---~~---------~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 287 (436)
-...++++|.+...+ .. ..-+.|+-.+..+-...++ .+|++++.|..|.+|+++ ++..........
T Consensus 152 ~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L~~idtnq~ 229 (420)
T KOG2096|consen 152 KRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLLQSIDTNQS 229 (420)
T ss_pred ccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cceeeeeccccc
Confidence 877899999875321 11 1113466677777777766 899999999999999999 555555556667
Q ss_pred CeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 013827 288 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 367 (436)
Q Consensus 288 ~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd 367 (436)
.-+..+.+|+| +++++++-.--|++|.+--.+.. .......+..+++|...|..++|+|+. ..+++.+.||++++||
T Consensus 230 ~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG-~fqev~rvf~LkGH~saV~~~aFsn~S-~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 230 SNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDG-TFQEVKRVFSLKGHQSAVLAAAFSNSS-TRAVTVSKDGKWRIWD 306 (420)
T ss_pred cccceeeCCCC-cEEEEecCCCCceEEEEEeccCc-chhhhhhhheeccchhheeeeeeCCCc-ceeEEEecCCcEEEee
Confidence 77889999988 68888888889999986433211 111224578899999999999999998 8999999999999999
Q ss_pred CCCC-----CceeEEee----CCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 368 LSNN-----QPSCIASR----NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 368 ~~~~-----~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
..-. .+..+... ....+....+.++|.|. .|| .+....+++|..++++....
T Consensus 307 tdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~-~lA-~s~gs~l~~~~se~g~~~~~ 367 (420)
T KOG2096|consen 307 TDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD-SLA-VSFGSDLKVFASEDGKDYPE 367 (420)
T ss_pred ccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc-EEE-eecCCceEEEEcccCccchh
Confidence 8531 11111111 12233344899999999 466 44556799999988776543
No 153
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.1e-21 Score=160.08 Aligned_cols=290 Identities=13% Similarity=0.208 Sum_probs=211.2
Q ss_pred cccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcE
Q 013827 76 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI 155 (436)
Q Consensus 76 v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 155 (436)
..++.|++-|.+||+|..+| +|.+|+..+.+...++..|-.++ .|+.| |+||+.|++++.|..|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG-----~vvI~D~~T~~iar~lsaH~~pi----~sl~W-------S~dgr~LltsS~D~si 89 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANG-----RVVIYDFDTFRIARMLSAHVRPI----TSLCW-------SRDGRKLLTSSRDWSI 89 (405)
T ss_pred cceEEeccCcceeeeeccCC-----cEEEEEccccchhhhhhccccce----eEEEe-------cCCCCEeeeecCCcee
Confidence 78899999999999999998 77888877776667777776555 57788 9999999999999999
Q ss_pred EEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeE
Q 013827 156 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC 235 (436)
Q Consensus 156 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~ 235 (436)
.+||+..+.++..+ ....+|+...|+|-..+..++.-.+..-.+-++..++.
T Consensus 90 ~lwDl~~gs~l~ri----------------------------rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h 141 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRI----------------------------RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH 141 (405)
T ss_pred EEEeccCCCceeEE----------------------------EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce
Confidence 99999988876654 35789999999998777776666666666666654321
Q ss_pred EEEEcc-----cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeee-CCeeEEEeCCCCCcEEEEEeCCC
Q 013827 236 NLTLEH-----HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA-ADVESLAWDPHAEHSFVVSLEDG 309 (436)
Q Consensus 236 ~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~dg 309 (436)
..+.. .+....+..|.+.| .++++|...|.+.++|..+.++........ ..|..+.++..| ..++..+.|.
T Consensus 142 -~~Lp~d~d~dln~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g-~~liiNtsDR 218 (405)
T KOG1273|consen 142 -SVLPKDDDGDLNSSASHGVFDRRG-KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKG-RFLIINTSDR 218 (405)
T ss_pred -eeccCCCccccccccccccccCCC-CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccC-cEEEEecCCc
Confidence 11211 11122334578888 999999999999999999988776554444 678889998877 6899999999
Q ss_pred cEEEEeCCCCCCCCCCCCCcccEEEec--cCCCeEEEEecCCCCCEEEEEeC-CCcEEEEECCCCCceeEEeeCCCC-Cc
Q 013827 310 TIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNPLVPNLLATGST-DKMVKLWDLSNNQPSCIASRNPKA-GA 385 (436)
Q Consensus 310 ~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~-~~ 385 (436)
.||.|+++............+.+.++. ....-.+++|+.+| .++++++. -..++||....+.. +..+.+.. ..
T Consensus 219 vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg-eYv~a~s~~aHaLYIWE~~~GsL--VKILhG~kgE~ 295 (405)
T KOG1273|consen 219 VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG-EYVCAGSARAHALYIWEKSIGSL--VKILHGTKGEE 295 (405)
T ss_pred eEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc-cEEEeccccceeEEEEecCCcce--eeeecCCchhh
Confidence 999999874321111001111122111 12344678899998 56665554 56799999999984 44455554 56
Q ss_pred EEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 386 VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 386 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
...+.|+|-.. ++++- ..|.++||.....+
T Consensus 296 l~DV~whp~rp-~i~si-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 296 LLDVNWHPVRP-IIASI-ASGVVYIWAVVQVE 325 (405)
T ss_pred eeeccccccee-eeeec-cCCceEEEEeeccc
Confidence 78899999988 46655 78999999876543
No 154
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=1.8e-21 Score=160.90 Aligned_cols=289 Identities=18% Similarity=0.262 Sum_probs=205.6
Q ss_pred ccccccceeccCCceEEEEEecCCcceeEEEEEecCCC-------CCCceeeec--ccccCcCcceeecccCCCCCCCCC
Q 013827 73 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG-------GDPNLYVHH--HIIIPAFPLCMAWLDCPLKDREKG 143 (436)
Q Consensus 73 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~-------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~ 143 (436)
........|||||.-|++-+.++ .+.+|+.... .......+. ....+..+....|.+..-..-|+.
T Consensus 49 ~nf~kgckWSPDGSciL~~sedn-----~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t 123 (406)
T KOG2919|consen 49 LNFLKGCKWSPDGSCILSLSEDN-----CLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST 123 (406)
T ss_pred hhhhccceeCCCCceEEeecccC-----eeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc
Confidence 34566789999999999988876 3444433221 111111111 111122233445543333346899
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccc---eeEEEecCCCCcEEEEEe
Q 013827 144 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS---VLGLAWNKEFRNILASAS 220 (436)
Q Consensus 144 ~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---v~~~~~~~~~~~~l~s~~ 220 (436)
.++|+.+.+.-|.+||.-+++.......+ .|.+. ..+++|+|||. .|++|
T Consensus 124 ~l~a~ssr~~PIh~wdaftG~lraSy~~y-------------------------dh~de~taAhsL~Fs~DGe-qlfaG- 176 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFTGKLRASYRAY-------------------------DHQDEYTAAHSLQFSPDGE-QLFAG- 176 (406)
T ss_pred ceeeeccccCceeeeeccccccccchhhh-------------------------hhHHhhhhheeEEecCCCC-eEeec-
Confidence 99999999999999999887765543322 24333 45799999985 66554
Q ss_pred CCCcEEEEeC-CCCeEEE---EE----cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEE
Q 013827 221 ADKQVKIWDV-AAGKCNL---TL----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 292 (436)
Q Consensus 221 ~dg~v~vwd~-~~~~~~~---~~----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~ 292 (436)
....|+++|+ +.|+.-. ++ .+..+.+.+++|+|.....++.++....+-|+.-....+.....+|.+.|+.+
T Consensus 177 ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL 256 (406)
T KOG2919|consen 177 YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHL 256 (406)
T ss_pred ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeE
Confidence 5579999999 4443211 11 23467889999999887799999999999999988888888888999999999
Q ss_pred EeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCC-CeEE--EEecCCCCCEEEEEeCCCcEEEEECC
Q 013827 293 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-AVCT--ISYNPLVPNLLATGSTDKMVKLWDLS 369 (436)
Q Consensus 293 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~v~~--~~~~p~~~~~l~~~~~d~~i~iwd~~ 369 (436)
+|.++|.+++.-+-.+-.|..||+|.. ..++..+..|.. .-.. ....|.+ ++|++|+.||.|++||+.
T Consensus 257 ~~~edGn~lfsGaRk~dkIl~WDiR~~--------~~pv~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 257 QWCEDGNKLFSGARKDDKILCWDIRYS--------RDPVYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLK 327 (406)
T ss_pred EeccCcCeecccccCCCeEEEEeehhc--------cchhhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecC
Confidence 999999654444456889999999987 366777777765 2233 4456777 899999999999999999
Q ss_pred C-CCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCC
Q 013827 370 N-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 405 (436)
Q Consensus 370 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 405 (436)
. +. .+..+..+...++.++++|--+ ++|+++..
T Consensus 328 ~~gn--~~sv~~~~sd~vNgvslnP~mp-ilatssGq 361 (406)
T KOG2919|consen 328 DLGN--EVSVTGNYSDTVNGVSLNPIMP-ILATSSGQ 361 (406)
T ss_pred CCCC--cccccccccccccceecCcccc-eeeeccCc
Confidence 8 44 3445667788999999999977 68776654
No 155
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=6.1e-22 Score=163.72 Aligned_cols=295 Identities=17% Similarity=0.226 Sum_probs=203.9
Q ss_pred HHHHhhcccceeeec-----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceec-------c
Q 013827 16 ILRLYHSCFRCHKIS-----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTIN-------P 83 (436)
Q Consensus 16 ~~~~~~~~~~~~~~~-----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-------p 83 (436)
-++...-|.|+|+++ +.||..++|+++.-.+-....+..++.... .+. ....+.|++..|- |
T Consensus 48 p~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~---~~r---~~eg~tvydy~wYs~M~s~qP 121 (406)
T KOG2919|consen 48 PLNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHL---SYR---YQEGETVYDYCWYSRMKSDQP 121 (406)
T ss_pred chhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccce---eEE---eccCCEEEEEEeeeccccCCC
Confidence 677888999999999 999999999986544332212222111111 111 1224567777776 7
Q ss_pred CCceEEEEEecCCcceeEEEEEecCCCCCCcee--eecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCC
Q 013827 84 NDAVIVCARNEDDVSHLEVYILEESDGGDPNLY--VHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLD 161 (436)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~ 161 (436)
+..++|+.+.+. -|.+|+.-+++...-+ ..|...+ ....|++| +|||.+|.+|- ...|+|+|+.
T Consensus 122 ~t~l~a~ssr~~-----PIh~wdaftG~lraSy~~ydh~de~-taAhsL~F-------s~DGeqlfaGy-krcirvFdt~ 187 (406)
T KOG2919|consen 122 STNLFAVSSRDQ-----PIHLWDAFTGKLRASYRAYDHQDEY-TAAHSLQF-------SPDGEQLFAGY-KRCIRVFDTS 187 (406)
T ss_pred ccceeeeccccC-----ceeeeeccccccccchhhhhhHHhh-hhheeEEe-------cCCCCeEeecc-cceEEEeecc
Confidence 888888888776 4555555554322222 2222121 12235554 99999998774 7899999995
Q ss_pred CCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcc
Q 013827 162 VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH 241 (436)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 241 (436)
......+.. ..+.....+..+-|.+++|+|.....++.|+...++-||.-..+.++..+.+
T Consensus 188 RpGr~c~vy-------------------~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg 248 (406)
T KOG2919|consen 188 RPGRDCPVY-------------------TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG 248 (406)
T ss_pred CCCCCCcch-------------------hhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc
Confidence 443332211 1111112356788999999998777999999999999999889999999999
Q ss_pred cCCCeEEEEEcCCCCCEEEEEEC-CCcEEEEecCCCCCccc-eEeeeC-Cee--EEEeCCCCCcEEEEEeCCCcEEEEeC
Q 013827 242 HTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSGF-KWAVAA-DVE--SLAWDPHAEHSFVVSLEDGTIKGFDI 316 (436)
Q Consensus 242 ~~~~v~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~-~~~~~~-~i~--~~~~~~~~~~~~~~~~~dg~i~i~d~ 316 (436)
|.+.|+.+.|.++| +.|++|.. |..|..||+|....+.. +..|.. .-. -+...|.+ +++++|+.||.|++||+
T Consensus 249 h~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 249 HGGGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDL 326 (406)
T ss_pred cCCCeeeEEeccCc-CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEec
Confidence 99999999999999 66777664 78899999997765532 223322 222 34456766 68999999999999999
Q ss_pred CCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCC
Q 013827 317 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD 360 (436)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 360 (436)
... ...+..+..+...++.++++|.- .++|+++..
T Consensus 327 k~~--------gn~~sv~~~~sd~vNgvslnP~m-pilatssGq 361 (406)
T KOG2919|consen 327 KDL--------GNEVSVTGNYSDTVNGVSLNPIM-PILATSSGQ 361 (406)
T ss_pred CCC--------CCcccccccccccccceecCccc-ceeeeccCc
Confidence 985 24466777888999999999986 577776644
No 156
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=4.1e-22 Score=171.97 Aligned_cols=209 Identities=20% Similarity=0.304 Sum_probs=170.6
Q ss_pred ccCcccceeEEEecCCCC-cEEEEEeCCCcEEEEeCCCC----eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 013827 196 KGSHTDSVLGLAWNKEFR-NILASASADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM 270 (436)
Q Consensus 196 ~~~h~~~v~~~~~~~~~~-~~l~s~~~dg~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~ 270 (436)
...+.++|++++|+|... +++|+|..-|.|-+||+.+. ..+..+..|..+|.+|.|+|.....+++.+.||+|++
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 345889999999999865 68999999999999999532 2355677899999999999998889999999999999
Q ss_pred EecCCCCCccceEe--eeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecC
Q 013827 271 KDARISTHSGFKWA--VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP 348 (436)
Q Consensus 271 wd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 348 (436)
-|++.......... ....+..+.|+.... .++.+..=|.+.+||+++.. .....+..|...|++++++|
T Consensus 262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~--------s~~~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDG--------SEYENLRLHKKKITSVALNP 332 (498)
T ss_pred eeecchhhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCC--------ccchhhhhhhcccceeecCC
Confidence 99987654432222 345577788887664 56666666699999999984 33455667888999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCcee--EEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 349 LVPNLLATGSTDKMVKLWDLSNNQPSC--IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 349 ~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
..+.+|||++.|++.+|||++...... +...-.|...|.+..|||.+.. |++.+.|..|+|||..
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSS 399 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecc
Confidence 999999999999999999998744322 3455678999999999999985 8899999999999984
No 157
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.2e-21 Score=174.32 Aligned_cols=323 Identities=17% Similarity=0.218 Sum_probs=229.1
Q ss_pred CCCCCcccC---CCCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccC
Q 013827 59 NQMDPYLKD---KDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC 135 (436)
Q Consensus 59 ~~~~~~~~~---~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (436)
.+..|+.+. .-.+|.+.|.++...|.|.+|++|+.++ .|.+|+..++++.... .......|++|.+
T Consensus 383 ~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDG-----tvriWEi~TgRcvr~~-----~~d~~I~~vaw~P- 451 (733)
T KOG0650|consen 383 KDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDG-----TVRIWEIATGRCVRTV-----QFDSEIRSVAWNP- 451 (733)
T ss_pred hhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCC-----cEEEEEeecceEEEEE-----eecceeEEEEecC-
Confidence 344555544 3347999999999999999999999887 7888888777443322 2334567999943
Q ss_pred CCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcc---eeeeccc--chhh----hhhcccCCC-cccccccccCcccceeE
Q 013827 136 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQP---HVILGGI--DEEK----KKKKSKKGK-KSSIKYKKGSHTDSVLG 205 (436)
Q Consensus 136 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~---~~~~~~~--~~~~----~~~~~~~~~-~~~~~~~~~~h~~~v~~ 205 (436)
.++-..||++-... +.|-+-.-+..+.. ...+... .... ..+...... ...-+...-.|...|..
T Consensus 452 ----~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~ 526 (733)
T KOG0650|consen 452 ----LSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQ 526 (733)
T ss_pred ----CCCceeEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccce
Confidence 23445566665444 66665443322211 1111111 0000 011111000 11112333458899999
Q ss_pred EEecCCCCcEEEEEeCC---CcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccce
Q 013827 206 LAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK 282 (436)
Q Consensus 206 ~~~~~~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 282 (436)
+.|+..|. ||++...+ ..|.|+++...+...-|....+.|.++.|+|.. .+|++++ ...|++||+.........
T Consensus 527 vtWHrkGD-YlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~-p~lfVaT-q~~vRiYdL~kqelvKkL 603 (733)
T KOG0650|consen 527 VTWHRKGD-YLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSK-PYLFVAT-QRSVRIYDLSKQELVKKL 603 (733)
T ss_pred eeeecCCc-eEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCC-ceEEEEe-ccceEEEehhHHHHHHHH
Confidence 99999985 88887654 468999998877666676667889999999998 5566655 467999999887666666
Q ss_pred EeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCc
Q 013827 283 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM 362 (436)
Q Consensus 283 ~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~ 362 (436)
......+..++.+|.|. -+++|+.|+.+..||+.-. .++..++..|...++.++|++.- .++++|+.||+
T Consensus 604 ~tg~kwiS~msihp~GD-nli~gs~d~k~~WfDldls--------skPyk~lr~H~~avr~Va~H~ry-PLfas~sdDgt 673 (733)
T KOG0650|consen 604 LTGSKWISSMSIHPNGD-NLILGSYDKKMCWFDLDLS--------SKPYKTLRLHEKAVRSVAFHKRY-PLFASGSDDGT 673 (733)
T ss_pred hcCCeeeeeeeecCCCC-eEEEecCCCeeEEEEcccC--------cchhHHhhhhhhhhhhhhhcccc-ceeeeecCCCc
Confidence 66677799999999885 5888999999999999876 36788889999999999999987 79999999999
Q ss_pred EEEEECC-------CCCceeEEeeCCCCCc----EEEEEEcCCCCcEEEEEeCCCcEEEE
Q 013827 363 VKLWDLS-------NNQPSCIASRNPKAGA----VFSVAFSEDSPFVLAIGGSKGKLEIW 411 (436)
Q Consensus 363 i~iwd~~-------~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~s~~~dg~i~iw 411 (436)
+.||--. +.-...+..+.+|... |..+.|+|...+ |.+++.||+|++|
T Consensus 674 v~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpW-LfsAGAd~tirlf 732 (733)
T KOG0650|consen 674 VIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW-LFSAGADGTIRLF 732 (733)
T ss_pred EEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCce-EEecCCCceEEee
Confidence 9998432 2233456677777654 888999999996 7889999999998
No 158
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.89 E-value=1.3e-20 Score=175.06 Aligned_cols=274 Identities=18% Similarity=0.276 Sum_probs=202.6
Q ss_pred EEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhh
Q 013827 101 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKK 180 (436)
Q Consensus 101 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 180 (436)
.+++|+......+.+..... ....|+.+.++ +..+||.|..+|.|.+||+.......+
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~----s~v~~~~f~p~------~p~ll~gG~y~GqV~lWD~~~~~~~~~------------ 280 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESP----SEVTCLKFCPF------DPNLLAGGCYNGQVVLWDLRKGSDTPP------------ 280 (555)
T ss_pred eEEEEecCCCCCceEEEecC----CceeEEEeccC------CcceEEeeccCceEEEEEccCCCCCCC------------
Confidence 46677776653333333332 33456666432 678899999999999999986554221
Q ss_pred hhcccCCCcccccccccCcccceeEEEecCCCC-cEEEEEeCCCcEEEEeCCCCeE-E-----EEEc------ccCCCeE
Q 013827 181 KKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR-NILASASADKQVKIWDVAAGKC-N-----LTLE------HHTDKVQ 247 (436)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~dg~v~vwd~~~~~~-~-----~~~~------~~~~~v~ 247 (436)
.........|..+|+.+.|..+-. .-+++++.||.|..|+++.-.. . .... .-...++
T Consensus 281 ---------s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t 351 (555)
T KOG1587|consen 281 ---------SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGAT 351 (555)
T ss_pred ---------cccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccccccccccccccee
Confidence 222233447999999999976521 3488999999999998764322 1 1111 1234789
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEecCCCCC--------ccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 248 AVAWNHHSPQILLSGSFDRSVVMKDARISTH--------SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 319 (436)
Q Consensus 248 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 319 (436)
+++|.+..+..++.|+.+|.|.--+-..... ......|.++++++.++|-...++++++ |.+++||.....
T Consensus 352 ~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~ 430 (555)
T KOG1587|consen 352 SLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI 430 (555)
T ss_pred eEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC
Confidence 9999999889999999999988743322211 2234567899999999998877777777 999999998732
Q ss_pred CCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEE
Q 013827 320 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVL 399 (436)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 399 (436)
..++..+..+...+++++|||..+.+++++..||.+.+||+.......+.....+....+.+.|++.|+ +|
T Consensus 431 --------~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~-~l 501 (555)
T KOG1587|consen 431 --------ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGK-LL 501 (555)
T ss_pred --------CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCc-EE
Confidence 266777888888899999999999999999999999999998766555655555566788899999999 69
Q ss_pred EEEeCCCcEEEEeCCC
Q 013827 400 AIGGSKGKLEIWDTLS 415 (436)
Q Consensus 400 ~s~~~dg~i~iwd~~~ 415 (436)
+.|...|++.+|++..
T Consensus 502 avGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 502 AVGDANGTTHILKLSE 517 (555)
T ss_pred EEecCCCcEEEEEcCc
Confidence 9999999999999953
No 159
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=1.5e-21 Score=175.95 Aligned_cols=276 Identities=17% Similarity=0.327 Sum_probs=212.3
Q ss_pred ccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCc
Q 013827 75 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA 154 (436)
Q Consensus 75 ~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 154 (436)
.|.+++|-|||..|+.+..+ ++.+|+..++...+.+..|... +.|++| +.||+++|+|+.|..
T Consensus 14 ci~d~afkPDGsqL~lAAg~------rlliyD~ndG~llqtLKgHKDt----VycVAy-------s~dGkrFASG~aDK~ 76 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS------RLLVYDTSDGTLLQPLKGHKDT----VYCVAY-------AKDGKRFASGSADKS 76 (1081)
T ss_pred chheeEECCCCceEEEecCC------EEEEEeCCCcccccccccccce----EEEEEE-------ccCCceeccCCCcee
Confidence 79999999999988888765 8999999998777666666543 468999 899999999999999
Q ss_pred EEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCe
Q 013827 155 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 234 (436)
Q Consensus 155 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~ 234 (436)
|.+|+-.-...+. ..|.+.|.|+.|+|- .+.|++++-. ..-+|..+...
T Consensus 77 VI~W~~klEG~Lk-----------------------------YSH~D~IQCMsFNP~-~h~LasCsLs-dFglWS~~qK~ 125 (1081)
T KOG1538|consen 77 VIIWTSKLEGILK-----------------------------YSHNDAIQCMSFNPI-THQLASCSLS-DFGLWSPEQKS 125 (1081)
T ss_pred EEEecccccceee-----------------------------eccCCeeeEeecCch-HHHhhhcchh-hccccChhhhh
Confidence 9999865322221 159999999999998 4789998874 57788866433
Q ss_pred EEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccce--EeeeCCeeEEEeCCCCC----cEEEEEeCC
Q 013827 235 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--WAVAADVESLAWDPHAE----HSFVVSLED 308 (436)
Q Consensus 235 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~~~~~~i~~~~~~~~~~----~~~~~~~~d 308 (436)
+...+ ....+.+++|..|| .+++.|-.+|+|.+-+.......... -+.+.+|.+++|+|... ..+++....
T Consensus 126 -V~K~k-ss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~ 202 (1081)
T KOG1538|consen 126 -VSKHK-SSSRIICCSWTNDG-QYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWG 202 (1081)
T ss_pred -HHhhh-hheeEEEeeecCCC-cEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecc
Confidence 22222 34678899999999 99999999999999865544433322 24677899999999632 367888888
Q ss_pred CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEE
Q 013827 309 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS 388 (436)
Q Consensus 309 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 388 (436)
.++.+|.+... .+..-..-.-...|+.+.|+| .+++.|+.|+.+.+|-...- .+-+.......|+.
T Consensus 203 qTLSFy~LsG~----------~Igk~r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR~Gv---rLGTvg~~D~WIWt 268 (1081)
T KOG1538|consen 203 QTLSFYQLSGK----------QIGKDRALNFDPCCISYFTNG-EYILLGGSDKQLSLFTRDGV---RLGTVGEQDSWIWT 268 (1081)
T ss_pred ceeEEEEecce----------eecccccCCCCchhheeccCC-cEEEEccCCCceEEEeecCe---EEeeccccceeEEE
Confidence 88988888643 122222233456789999999 89999999999999965433 35555556679999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 389 VAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 389 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
++..|++++ ++.|+.||+|.-|++...
T Consensus 269 V~~~PNsQ~-v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 269 VQAKPNSQY-VVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred EEEccCCce-EEEEEccCeeehhhhHHh
Confidence 999999996 888999999999998543
No 160
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=7.8e-22 Score=188.29 Aligned_cols=256 Identities=19% Similarity=0.300 Sum_probs=195.4
Q ss_pred CCccccccceeccCCce----EEEEEecCCcceeEEEEEecCCC--CCCceeeecccccCcCcceeecccCCCCCCCC-C
Q 013827 71 EDSEDLEDMTINPNDAV----IVCARNEDDVSHLEVYILEESDG--GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK-G 143 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~----l~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~ 143 (436)
..+..-+.++|.+.+.. ||.|..+| .|.+|+.... ........+.......+..+++ ++. +
T Consensus 62 ~s~~rF~kL~W~~~g~~~~GlIaGG~edG-----~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDf-------N~~q~ 129 (1049)
T KOG0307|consen 62 QSSNRFNKLAWGSYGSHSHGLIAGGLEDG-----NIVLYDPASIIANASEEVLATKSKHTGPVLGLDF-------NPFQG 129 (1049)
T ss_pred cccccceeeeecccCCCccceeeccccCC-----ceEEecchhhccCcchHHHhhhcccCCceeeeec-------cccCC
Confidence 34566788999998877 55555554 6666665441 1111111111122222333444 665 5
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCC
Q 013827 144 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK 223 (436)
Q Consensus 144 ~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 223 (436)
++||+|+.||.|.|||+...+..... .-..-.+.|.+++|+..-..+|++++.+|
T Consensus 130 nlLASGa~~geI~iWDlnn~~tP~~~-------------------------~~~~~~~eI~~lsWNrkvqhILAS~s~sg 184 (1049)
T KOG0307|consen 130 NLLASGADDGEILIWDLNKPETPFTP-------------------------GSQAPPSEIKCLSWNRKVSHILASGSPSG 184 (1049)
T ss_pred ceeeccCCCCcEEEeccCCcCCCCCC-------------------------CCCCCcccceEeccchhhhHHhhccCCCC
Confidence 59999999999999999853322110 01135678999999998778999999999
Q ss_pred cEEEEeCCCCeEEEEEcccCC--CeEEEEEcCCCCCEEEEEECCC---cEEEEecCCCCCcc-ceEeeeCCeeEEEeCCC
Q 013827 224 QVKIWDVAAGKCNLTLEHHTD--KVQAVAWNHHSPQILLSGSFDR---SVVMKDARISTHSG-FKWAVAADVESLAWDPH 297 (436)
Q Consensus 224 ~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~-~~~~~~~~i~~~~~~~~ 297 (436)
.+.|||++..+.+..+..+.. .+..++|+|++...+++++.|. .|.+||+|...... ....|...|.++.|++.
T Consensus 185 ~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~ 264 (1049)
T KOG0307|consen 185 RAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQ 264 (1049)
T ss_pred CceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCC
Confidence 999999999888877765544 4778999999988888888775 58999999766554 34589999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 013827 298 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 298 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
+..++++++.|+.|.+|+..++ +.+..+......+..+.|+|..+.++++++.||.|.||.+....
T Consensus 265 D~~lllSsgkD~~ii~wN~~tg---------Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 265 DPRLLLSSGKDNRIICWNPNTG---------EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CchhhhcccCCCCeeEecCCCc---------eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9899999999999999999997 66778888888999999999998999999999999999997654
No 161
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3e-21 Score=160.79 Aligned_cols=244 Identities=17% Similarity=0.250 Sum_probs=181.0
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCC-CCcEEEEEeC
Q 013827 143 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNILASASA 221 (436)
Q Consensus 143 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~ 221 (436)
...+|++...|.|++||..+++.++. +.++...++.++|... +...+.+|+.
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~---------------------------fk~~~~~~N~vrf~~~ds~h~v~s~ss 92 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEE---------------------------FKGPPATTNGVRFISCDSPHGVISCSS 92 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhhe---------------------------ecCCCCcccceEEecCCCCCeeEEecc
Confidence 36789999999999999988666654 5578888899999774 5678999999
Q ss_pred CCcEEEEeCCCCeEEEEE--cccC-CCeEEEEEcCCCCCEEEEEEC----CCcEEEEecCCCCCc--cceEeeeCCeeEE
Q 013827 222 DKQVKIWDVAAGKCNLTL--EHHT-DKVQAVAWNHHSPQILLSGSF----DRSVVMKDARISTHS--GFKWAVAADVESL 292 (436)
Q Consensus 222 dg~v~vwd~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~~l~s~~~----d~~i~~wd~~~~~~~--~~~~~~~~~i~~~ 292 (436)
||+|++||++.......+ ..+. .+..+++..-.+ +++++|.. +..|.+||+|..+.. .....|...|+++
T Consensus 93 DG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~l 171 (376)
T KOG1188|consen 93 DGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQL 171 (376)
T ss_pred CCeEEEEEeecchhhhheeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeE
Confidence 999999999886554443 4444 466677766566 67777753 678999999988763 2344789999999
Q ss_pred EeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 013827 293 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 293 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
.|+|..++++++|+.||.|.+||+..... ...+.....|...|.++.|..++-..|.+-+...+..+|+++.+.
T Consensus 172 rFHP~~pnlLlSGSvDGLvnlfD~~~d~E------eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 172 RFHPSDPNLLLSGSVDGLVNLFDTKKDNE------EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred EecCCCCCeEEeecccceEEeeecCCCcc------hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 99999999999999999999999987632 233444455777788999988764568888888888888876542
Q ss_pred ce-----------------------------------------------------------eEEeeC-CCCCcEEEEEEc
Q 013827 373 PS-----------------------------------------------------------CIASRN-PKAGAVFSVAFS 392 (436)
Q Consensus 373 ~~-----------------------------------------------------------~~~~~~-~~~~~v~~~~~~ 392 (436)
.. ....+. +|...|+++.|.
T Consensus 246 ~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~ 325 (376)
T KOG1188|consen 246 EETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFD 325 (376)
T ss_pred hhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhh
Confidence 10 000111 133345666676
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 393 EDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 393 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
-.+. ++.|||.||.+.+|.......+..
T Consensus 326 ~~~~-~l~TGGEDG~l~~Wk~~da~e~~~ 353 (376)
T KOG1188|consen 326 VKND-VLYTGGEDGLLQAWKVEDATEINF 353 (376)
T ss_pred cccc-eeeccCCCceEEEEecCCcccccc
Confidence 6666 699999999999999655444433
No 162
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=2.9e-20 Score=168.42 Aligned_cols=340 Identities=16% Similarity=0.157 Sum_probs=242.5
Q ss_pred HHHHHhhcccceeeec-----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEE
Q 013827 15 EILRLYHSCFRCHKIS-----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIV 89 (436)
Q Consensus 15 ~~~~~~~~~~~~~~~~-----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 89 (436)
.|-.-++...|.|... |.|+|..||.+.+....- +...+ .-+..+....-....|+|+++.++
T Consensus 265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiW------v~~vR------lGe~gg~a~GF~g~lw~~n~~~ii 332 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIW------VDVVR------LGEVGGSAGGFWGGLWSPNSNVII 332 (764)
T ss_pred CcccceEEEEEccchhhheecccCcceEEEecCCccceE------EEEEE------eecccccccceeeEEEcCCCCEEE
Confidence 3334566778998873 999999999876553211 00000 001112334567889999999888
Q ss_pred EEEecCCcceeEEEEEecCCCC---CCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCC
Q 013827 90 CARNEDDVSHLEVYILEESDGG---DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEV 166 (436)
Q Consensus 90 ~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~ 166 (436)
+-+..+ ..+.|...+.. ......+|... +..++| +|.|.+|++.+.|-+-||+---..+.
T Consensus 333 ~~g~~G-----g~hlWkt~d~~~w~~~~~iSGH~~~----V~dv~W-------~psGeflLsvs~DQTTRlFa~wg~q~- 395 (764)
T KOG1063|consen 333 AHGRTG-----GFHLWKTKDKTFWTQEPVISGHVDG----VKDVDW-------DPSGEFLLSVSLDQTTRLFARWGRQQ- 395 (764)
T ss_pred EecccC-----cEEEEeccCccceeecccccccccc----ceeeee-------cCCCCEEEEeccccceeeeccccccc-
Confidence 877665 45555533311 11122233222 234666 89999999999999999986541111
Q ss_pred cceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCC--------------
Q 013827 167 QPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-------------- 232 (436)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~-------------- 232 (436)
......+.+-|...++|++|-+. +..+++|.....+|+|+...
T Consensus 396 ----------------------~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~ 452 (764)
T KOG1063|consen 396 ----------------------EWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCF 452 (764)
T ss_pred ----------------------ceeeecccccccccceeeehccC-CceeeecccceeeeeecCcHHHHHHHHHHhCccc
Confidence 12222234458889999999985 46899999999999998530
Q ss_pred -----------------------------CeE---------------------------------EEEEcccCCCeEEEE
Q 013827 233 -----------------------------GKC---------------------------------NLTLEHHTDKVQAVA 250 (436)
Q Consensus 233 -----------------------------~~~---------------------------------~~~~~~~~~~v~~~~ 250 (436)
|.. ++.+.+|...|++++
T Consensus 453 ~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~ 532 (764)
T KOG1063|consen 453 KGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALA 532 (764)
T ss_pred cCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEE
Confidence 000 012346889999999
Q ss_pred EcCCCCCEEEEEECCC-----cEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCC
Q 013827 251 WNHHSPQILLSGSFDR-----SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS 325 (436)
Q Consensus 251 ~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~ 325 (436)
.+|++ +++++++... .|++|+..+-.....+..|.-.|+.++|+|++ .++++.+.|.++.+|.........
T Consensus 533 ~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e-- 608 (764)
T KOG1063|consen 533 ISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDE-- 608 (764)
T ss_pred ecCCC-CEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccchh--
Confidence 99999 9999998654 58999999888887788999999999999988 689999999999999986542211
Q ss_pred CCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC--CceeEEeeCCCCCcEEEEEEcC----CCCcEE
Q 013827 326 TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN--QPSCIASRNPKAGAVFSVAFSE----DSPFVL 399 (436)
Q Consensus 326 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~----~~~~~l 399 (436)
......+.|+.-|....|+|++ .+++|+|.|.+|++|..... +.........+..+|++++|.| +..+++
T Consensus 609 ---~~fa~~k~HtRIIWdcsW~pde-~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~v 684 (764)
T KOG1063|consen 609 ---FRFACLKAHTRIIWDCSWSPDE-KYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVV 684 (764)
T ss_pred ---hhhccccccceEEEEcccCccc-ceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceE
Confidence 1123378899999999999998 88999999999999998876 3222223445778999999877 333478
Q ss_pred EEEeCCCcEEEEeCC
Q 013827 400 AIGGSKGKLEIWDTL 414 (436)
Q Consensus 400 ~s~~~dg~i~iwd~~ 414 (436)
+.|-..|.|.+|...
T Consensus 685 avGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 685 AVGLEKGEIVLWRRK 699 (764)
T ss_pred EEEecccEEEEEecc
Confidence 889999999999976
No 163
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=8.4e-21 Score=161.01 Aligned_cols=220 Identities=19% Similarity=0.325 Sum_probs=177.5
Q ss_pred cccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC-------eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCc
Q 013827 195 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS 267 (436)
Q Consensus 195 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 267 (436)
...||+++|..++|+|...+.+|||+.|.+|.||.+..+ +++..+.+|...|.-++|+|.-.+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 356999999999999988889999999999999999754 4577889999999999999998899999999999
Q ss_pred EEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCC-eEEEEe
Q 013827 268 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA-VCTISY 346 (436)
Q Consensus 268 i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~ 346 (436)
|.+||+.++.....+ .|+.-|.++.|+.+| .++++.+.|..|++||.+++ ..+..-.+|.+. -..+.|
T Consensus 156 v~iWnv~tgeali~l-~hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~---------~~v~e~~~heG~k~~Raif 224 (472)
T KOG0303|consen 156 VSIWNVGTGEALITL-DHPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRG---------TVVSEGVAHEGAKPARAIF 224 (472)
T ss_pred EEEEeccCCceeeec-CCCCeEEEEEeccCC-ceeeeecccceeEEEcCCCC---------cEeeecccccCCCcceeEE
Confidence 999999999877643 499999999999988 68999999999999999998 555555667643 455667
Q ss_pred cCCCCCEEEEEeC---CCcEEEEECCCCC-ceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 347 NPLVPNLLATGST---DKMVKLWDLSNNQ-PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 347 ~p~~~~~l~~~~~---d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
-.++ .++.||.. +..+.+||....+ +.....+.. ...|.---|.+|...+.++|-.|+.|+-|.+.+...--.+
T Consensus 225 l~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hy 302 (472)
T KOG0303|consen 225 LASG-KIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHY 302 (472)
T ss_pred eccC-ceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEE
Confidence 7777 55555543 6789999987643 334444443 3456666688888866777888999999999988865555
Q ss_pred ccCCC
Q 013827 423 FSKYS 427 (436)
Q Consensus 423 ~~~~~ 427 (436)
+..+.
T Consensus 303 ln~f~ 307 (472)
T KOG0303|consen 303 LNTFS 307 (472)
T ss_pred ecccc
Confidence 55544
No 164
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.87 E-value=1.9e-20 Score=152.71 Aligned_cols=210 Identities=20% Similarity=0.326 Sum_probs=169.7
Q ss_pred CcccceeEEEecCCC----CcEEEEEeCCCcEEEEeCCCC--eE--EEEE-----cccCCCeEEEEEcCCCCCEEEEEEC
Q 013827 198 SHTDSVLGLAWNKEF----RNILASASADKQVKIWDVAAG--KC--NLTL-----EHHTDKVQAVAWNHHSPQILLSGSF 264 (436)
Q Consensus 198 ~h~~~v~~~~~~~~~----~~~l~s~~~dg~v~vwd~~~~--~~--~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~ 264 (436)
.|.-+++.+.|.|+. +.+||+++ ..+|+|.+... +. ...+ ..+..++++..|+.-.++++.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 689999999999984 23676665 47999998742 21 1111 2467899999999988899999999
Q ss_pred CCcEEEEecCCCCC---ccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCe
Q 013827 265 DRSVVMKDARISTH---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 341 (436)
Q Consensus 265 d~~i~~wd~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 341 (436)
|-+..+||+.++.. ...+..|...|..++|...+...|++.+.||++|+||+|..... ..++.-.....+.
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS------TIIYE~p~~~~pL 245 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS------TIIYEDPSPSTPL 245 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc------eEEecCCCCCCcc
Confidence 99999999998633 34567899999999999988889999999999999999987431 2222222335678
Q ss_pred EEEEecCCCCCEEEEEeCC-CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 342 CTISYNPLVPNLLATGSTD-KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 342 ~~~~~~p~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
..++|++..++++|+-..| ..|.|.|++... ..+..+.+|.+.|++++|.|.....++++|.|..+.+||+.+-
T Consensus 246 lRLswnkqDpnymATf~~dS~~V~iLDiR~P~-tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 246 LRLSWNKQDPNYMATFAMDSNKVVILDIRVPC-TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred eeeccCcCCchHHhhhhcCCceEEEEEecCCC-cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 8999999998999987775 459999999865 3677889999999999999988778999999999999999754
No 165
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=5.6e-20 Score=156.65 Aligned_cols=313 Identities=20% Similarity=0.290 Sum_probs=212.3
Q ss_pred CccccccceeccCCc-eEEEEEecCCcceeEEEEEecCCCCC--Cceeeeccccc-CcCcceeecccCCCCCCCCCcEEE
Q 013827 72 DSEDLEDMTINPNDA-VIVCARNEDDVSHLEVYILEESDGGD--PNLYVHHHIII-PAFPLCMAWLDCPLKDREKGNFMA 147 (436)
Q Consensus 72 ~~~~v~~~~~sp~~~-~l~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~ 147 (436)
..++|+++.|.++.. .+|+|+.|.++ ++|-.+...... ..+..+..... ..-+.++.| +|+|++||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~i---riW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf-------~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDI---RIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRF-------SPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccce---eeeeeeecCCCCCceeEEEeecccCCcceeEEEEE-------cCCcCeee
Confidence 356799999999887 99999988754 555554433322 12211111111 112244555 99999999
Q ss_pred EeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEE
Q 013827 148 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 227 (436)
Q Consensus 148 ~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~v 227 (436)
+|+.+|.|.+|-........ .. ...............+.+|...|..++|+|++ .++++++.|.++++
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~------~d-----~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l 149 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFD------AD-----TEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRL 149 (434)
T ss_pred ecCCCceEEEEEecCcCCcc------cc-----chhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEE
Confidence 99999999999876411110 00 01112234456667788899999999999996 69999999999999
Q ss_pred EeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccce-------------------Eee---
Q 013827 228 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-------------------WAV--- 285 (436)
Q Consensus 228 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-------------------~~~--- 285 (436)
||+..|+....+..|...++.++|.|-+ .++++-+.|...+.+.+......... .-|
T Consensus 150 ~Dv~~G~l~~~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeT 228 (434)
T KOG1009|consen 150 WDVHAGQLLAILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDET 228 (434)
T ss_pred EEeccceeEeeccccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCc
Confidence 9999999999999999999999999998 88999888887777666543322111 111
Q ss_pred -eCCeeEEEeCCCCCcEEEEEeC----CC-----cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCC------
Q 013827 286 -AADVESLAWDPHAEHSFVVSLE----DG-----TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL------ 349 (436)
Q Consensus 286 -~~~i~~~~~~~~~~~~~~~~~~----dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~------ 349 (436)
+.-...++|+|+| .++++... .+ ..++|+-... ..+...+.....+...+.|+|-
T Consensus 229 lksFFrRlsfTPdG-~llvtPag~~~~g~~~~~n~tYvfsrk~l--------~rP~~~lp~~~k~~lavr~~pVy~elrp 299 (434)
T KOG1009|consen 229 LKSFFRRLSFTPDG-SLLVTPAGLFKVGGGVFRNTSYVFSRKDL--------KRPAARLPSPKKPALAVRFSPVYYELRP 299 (434)
T ss_pred hhhhhhhcccCCCC-cEEEcccceeeeCCceeeceeEeeccccc--------cCceeecCCCCcceEEEEeeeeEEEecc
Confidence 1225577899988 45665421 22 2344443322 2555666666666666666651
Q ss_pred -----------CCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 350 -----------VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 350 -----------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
....+|.++ .+.|++||..+..+.... ..-|-..|+.++|++||.+ |+..+.||...+-.+...+.
T Consensus 300 ~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v-~nihy~~iTDiaws~dg~~-l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 300 LSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVV-DNIHYSAITDIAWSDDGSV-LLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred ccccccccccccceEEEEee-cceEEEeccccccceEEE-eeeeeeeecceeecCCCcE-EEEeccCCceEEEEEcchhc
Confidence 002344444 557999999988764443 3557889999999999995 77789999988877776655
Q ss_pred c
Q 013827 419 I 419 (436)
Q Consensus 419 ~ 419 (436)
-
T Consensus 377 g 377 (434)
T KOG1009|consen 377 G 377 (434)
T ss_pred c
Confidence 3
No 166
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.1e-20 Score=167.33 Aligned_cols=258 Identities=17% Similarity=0.212 Sum_probs=190.7
Q ss_pred CCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEE
Q 013827 137 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 216 (436)
Q Consensus 137 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 216 (436)
..|++....|++++.||+|.+|+++... ....+....+..+.+|.++|.|++..+++ ..+
T Consensus 300 l~~~~sep~lit~sed~~lk~WnLqk~~-------------------~s~~~~~epi~tfraH~gPVl~v~v~~n~-~~~ 359 (577)
T KOG0642|consen 300 LAFHPSEPVLITASEDGTLKLWNLQKAK-------------------KSAEKDVEPILTFRAHEGPVLCVVVPSNG-EHC 359 (577)
T ss_pred hhcCCCCCeEEEeccccchhhhhhcccC-------------------CccccceeeeEEEecccCceEEEEecCCc-eEE
Confidence 3458889999999999999999994210 12335567788899999999999999996 699
Q ss_pred EEEeCCCcEEEEeCCCC----------eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccc-eEee
Q 013827 217 ASASADKQVKIWDVAAG----------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-KWAV 285 (436)
Q Consensus 217 ~s~~~dg~v~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~~ 285 (436)
++|+.||+|+.|++... .....+.||.+.|+.+++++.. ..|++++.||++++|+......... ....
T Consensus 360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~~~f~~~~e 438 (577)
T KOG0642|consen 360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESPCTFGEPKE 438 (577)
T ss_pred EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCccccCCccc
Confidence 99999999999976422 2235678999999999999988 7899999999999999877665211 1122
Q ss_pred eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec-------cCCCeEEEEecCCCCCEEEEEe
Q 013827 286 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-------HDKAVCTISYNPLVPNLLATGS 358 (436)
Q Consensus 286 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~p~~~~~l~~~~ 358 (436)
.+...++++-.......++...-+.-.++++.... ....+.. ....+..+.++|.. .+.+++.
T Consensus 439 ~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s---------~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~h 508 (577)
T KOG0642|consen 439 HGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVS---------DLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAH 508 (577)
T ss_pred cCCcceEeeccchhHhhhhhcccccccchhhhhhh---------heeeccccCCCcccccCccceEEecCCC-CeeEecc
Confidence 33455566554332233333333333344443331 1111111 12346788899988 7999999
Q ss_pred CCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccCCCC
Q 013827 359 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 428 (436)
Q Consensus 359 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 428 (436)
.|+.|+++|..+++ .+.....|...++++++.|+|.+ |++++.|+.+++|.+....++.....+...
T Consensus 509 ed~~Ir~~dn~~~~--~l~s~~a~~~svtslai~~ng~~-l~s~s~d~sv~l~kld~k~~~~es~~~r~~ 575 (577)
T KOG0642|consen 509 EDRSIRFFDNKTGK--ILHSMVAHKDSVTSLAIDPNGPY-LMSGSHDGSVRLWKLDVKTCVLESTAHRKK 575 (577)
T ss_pred cCCceecccccccc--cchheeeccceecceeecCCCce-EEeecCCceeehhhccchheeecccccccc
Confidence 99999999999998 46667788889999999999996 899999999999999988888766555443
No 167
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=3.5e-19 Score=145.29 Aligned_cols=272 Identities=17% Similarity=0.217 Sum_probs=192.5
Q ss_pred CCCCCccccccceeccCCceEEEEEecC---CcceeEEEEEecCCCCCCc----e--eeecccccCcCcceeecccCCCC
Q 013827 68 KDDEDSEDLEDMTINPNDAVIVCARNED---DVSHLEVYILEESDGGDPN----L--YVHHHIIIPAFPLCMAWLDCPLK 138 (436)
Q Consensus 68 ~~~~~~~~v~~~~~sp~~~~l~~~~~~~---~~~~~~v~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
....+.++|..++=+|-.+.+++..... ....-...+|...+..... + ..+-+...-....|+.|
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew------ 131 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEW------ 131 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEE------
Confidence 3346778999999999776655544331 1112345566655542221 1 01111111123368888
Q ss_pred CCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCC-CCcEEE
Q 013827 139 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNILA 217 (436)
Q Consensus 139 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~ 217 (436)
.|++..|++-. |..|.+|+++........... ..-.+|....++-+|+|. ..+.++
T Consensus 132 -~Pns~klasm~-dn~i~l~~l~ess~~vaev~s---------------------s~s~e~~~~ftsg~WspHHdgnqv~ 188 (370)
T KOG1007|consen 132 -EPNSDKLASMD-DNNIVLWSLDESSKIVAEVLS---------------------SESAEMRHSFTSGAWSPHHDGNQVA 188 (370)
T ss_pred -cCCCCeeEEec-cCceEEEEcccCcchheeecc---------------------cccccccceecccccCCCCccceEE
Confidence 78999998876 889999999876553111000 001136777889999992 224555
Q ss_pred EEeCCCcEEEEeCCCCeEEEEE-cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc-cceEeeeCCeeEEEeC
Q 013827 218 SASADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVAADVESLAWD 295 (436)
Q Consensus 218 s~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~i~~~~~~ 295 (436)
+. .|++++.||+++.++...+ ..|...|..+.|+|+-..+|++|+.||.|++||.|..+.+ ..+.+|...+.++.|+
T Consensus 189 tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn 267 (370)
T KOG1007|consen 189 TT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFN 267 (370)
T ss_pred Ee-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEec
Confidence 54 5789999999988776666 5688899999999998889999999999999999987655 4456788999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCCC--------------------CCCCcccEEEeccCCCeEEEEecCCCCCEEE
Q 013827 296 PHAEHSFVVSLEDGTIKGFDIRTAKSDPD--------------------STSQQSSFTLHAHDKAVCTISYNPLVPNLLA 355 (436)
Q Consensus 296 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~--------------------~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 355 (436)
|...+++++|+.|..|.+|....-..... ......+.++..|...|.+++|+.-.|-.+|
T Consensus 268 ~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFA 347 (370)
T KOG1007|consen 268 PEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFA 347 (370)
T ss_pred CccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEE
Confidence 98889999999999999998755432110 0112234577889999999999998888999
Q ss_pred EEeCCCcEEEEECC
Q 013827 356 TGSTDKMVKLWDLS 369 (436)
Q Consensus 356 ~~~~d~~i~iwd~~ 369 (436)
+-+.||++.|=.+.
T Consensus 348 SLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 348 SLSYDGRVIISSVP 361 (370)
T ss_pred EeccCceEEeecCC
Confidence 99999999886554
No 168
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=2.9e-19 Score=151.73 Aligned_cols=241 Identities=20% Similarity=0.289 Sum_probs=178.4
Q ss_pred ceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCccccc
Q 013827 114 NLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIK 193 (436)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (436)
.++..|..+ ++.++|.++ +...+|+|+.|.+|.||.+......... ....
T Consensus 75 P~v~GHt~~----vLDi~w~Pf------nD~vIASgSeD~~v~vW~IPe~~l~~~l--------------------tepv 124 (472)
T KOG0303|consen 75 PLVCGHTAP----VLDIDWCPF------NDCVIASGSEDTKVMVWQIPENGLTRDL--------------------TEPV 124 (472)
T ss_pred CCccCcccc----ccccccCcc------CCceeecCCCCceEEEEECCCcccccCc--------------------ccce
Confidence 444555433 356777533 7888999999999999999765544321 3455
Q ss_pred ccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEec
Q 013827 194 YKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 273 (436)
Q Consensus 194 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~ 273 (436)
..+.+|...|--++|+|...+.|++++.|.+|.+||+.+++.+.++. |.+.|+++.|+.+| .+|++.+.|..|++||.
T Consensus 125 v~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dp 202 (472)
T KOG0303|consen 125 VELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDP 202 (472)
T ss_pred EEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC-ceeeeecccceeEEEcC
Confidence 66889999999999999988999999999999999999999888888 99999999999999 89999999999999999
Q ss_pred CCCCCccceEeeeC-CeeEEEeCCCCCcEEEEEe---CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCC
Q 013827 274 RISTHSGFKWAVAA-DVESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 349 (436)
Q Consensus 274 ~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 349 (436)
++++.......|.+ ....+.|-.++. ++.+|. .+..+.+||..+.... .....+ .....|.---|.|+
T Consensus 203 r~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP------~~~~el-DtSnGvl~PFyD~d 274 (472)
T KOG0303|consen 203 RRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEP------IALQEL-DTSNGVLLPFYDPD 274 (472)
T ss_pred CCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCc------ceeEEe-ccCCceEEeeecCC
Confidence 99988765555543 456667777664 555553 4778999998876321 112233 34456777778888
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeEEeeCC--CCCcEEEEEEcCCC
Q 013827 350 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNP--KAGAVFSVAFSEDS 395 (436)
Q Consensus 350 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~ 395 (436)
..-+.++|-.|+.|+.|.+....+ .+..+.. ...+-..+.|-|..
T Consensus 275 t~ivYl~GKGD~~IRYyEit~d~P-~~hyln~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 275 TSIVYLCGKGDSSIRYFEITNEPP-FVHYLNTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred CCEEEEEecCCcceEEEEecCCCc-eeEEecccccCCccccccccccc
Confidence 733444555699999999987664 2222221 23355667777754
No 169
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=5.4e-19 Score=167.32 Aligned_cols=306 Identities=18% Similarity=0.271 Sum_probs=203.6
Q ss_pred ccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCc
Q 013827 75 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA 154 (436)
Q Consensus 75 ~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 154 (436)
....+.|+|=.+.++++.... .+.||.|+ ..+..+-+..+ ......+..+..+. ..|..+|++|+.||.
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~---~i~vwd~e--~~~~l~~F~n~-~~~~t~Vs~l~liN-----e~D~aLlLtas~dGv 1134 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRE---RIRVWDWE--KGRLLNGFDNG-AFPDTRVSDLELIN-----EQDDALLLTASSDGV 1134 (1387)
T ss_pred CCceeeecCCCceeEEcCCcc---eEEEEecc--cCceeccccCC-CCCCCccceeeeec-----ccchhheeeeccCce
Confidence 456789999999999986443 23555554 43222222222 12223334444442 457788999999999
Q ss_pred EEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCe
Q 013827 155 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 234 (436)
Q Consensus 155 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~ 234 (436)
|+||+-....-..+..+.+- ..+.-.+.+..+.=.-++|..... +|++++.-..|+|||.....
T Consensus 1135 IRIwk~y~~~~~~~eLVTaw---------------~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~ 1198 (1387)
T KOG1517|consen 1135 IRIWKDYADKWKKPELVTAW---------------SSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQ 1198 (1387)
T ss_pred EEEecccccccCCceeEEee---------------ccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccce
Confidence 99997543211111111100 001111111222224467877744 66666667899999999888
Q ss_pred EEEEEc-ccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCC---ccceEeeeCC--eeEEEeCCCCCcEEEEEeCC
Q 013827 235 CNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH---SGFKWAVAAD--VESLAWDPHAEHSFVVSLED 308 (436)
Q Consensus 235 ~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~d 308 (436)
+...+. +....|+++.-+-.+++.+++|..||.|++||.|.... +.....|... |..+.+.+.|-..+++|+.+
T Consensus 1199 ~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1199 VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccC
Confidence 777764 34557788876655558999999999999999987654 2333455555 99999999886679999999
Q ss_pred CcEEEEeCCCCCCCCCCCCCcccEEEeccC--C-CeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeC----C
Q 013827 309 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHD--K-AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN----P 381 (436)
Q Consensus 309 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~-~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~ 381 (436)
|.|++||+|... .........|- + ..+++..+++. ..+|+|+. +.|+||++...+...+.... .
T Consensus 1279 G~I~~~DlR~~~-------~e~~~~iv~~~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q 1349 (1387)
T KOG1517|consen 1279 GDIQLLDLRMSS-------KETFLTIVAHWEYGSALTALTVHEHA-PIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQ 1349 (1387)
T ss_pred CeEEEEecccCc-------ccccceeeeccccCccceeeeeccCC-CeeeecCc-ceEEEEecChhhhcccccCcccccC
Confidence 999999999851 12223333332 3 58999999988 79999998 99999999876532222211 2
Q ss_pred CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 382 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 382 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
..+.+.+++|+|..- ++|+|..|.+|.||...+..
T Consensus 1350 ~~gs~scL~FHP~~~-llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1350 RIGSVSCLAFHPHRL-LLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cCCCcceeeecchhH-hhhhccCCceEEEeecCCcC
Confidence 345789999999987 68999999999999887654
No 170
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.7e-19 Score=154.84 Aligned_cols=242 Identities=14% Similarity=0.191 Sum_probs=188.7
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
+|...+|++++.||+++||.++... ...+..+.--..+|.+.+|.|+|...++++
T Consensus 222 Hp~~plllvaG~d~~lrifqvDGk~-------------------------N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s 276 (514)
T KOG2055|consen 222 HPTAPLLLVAGLDGTLRIFQVDGKV-------------------------NPKLQSIHLEKFPIQKAEFAPNGHSVIFTS 276 (514)
T ss_pred cCCCceEEEecCCCcEEEEEecCcc-------------------------ChhheeeeeccCccceeeecCCCceEEEec
Confidence 9999999999999999999997422 222233333567899999999987689999
Q ss_pred eCCCcEEEEeCCCCeEEE--EEcccC-CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCC
Q 013827 220 SADKQVKIWDVAAGKCNL--TLEHHT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 296 (436)
Q Consensus 220 ~~dg~v~vwd~~~~~~~~--~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~ 296 (436)
+....++.||+.+.+..+ .+.++. ..+.....++++ ++|+..+..|.|.+.-..++..+. .....+.+..++|+.
T Consensus 277 ~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~-s~KieG~v~~~~fsS 354 (514)
T KOG2055|consen 277 GRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELIT-SFKIEGVVSDFTFSS 354 (514)
T ss_pred ccceEEEEeeccccccccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhh-eeeeccEEeeEEEec
Confidence 999999999999876433 223333 356778889999 899999999999999888877766 567788999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCC-CeEEEEecCCCCCEEEEEeCCCcEEEEECCC----C
Q 013827 297 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLSN----N 371 (436)
Q Consensus 297 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~----~ 371 (436)
++ ..+++++.+|.|.+||++.. .++..+....+ .-++++.++++ .+||+|+..|.|.|||..+ .
T Consensus 355 ds-k~l~~~~~~GeV~v~nl~~~---------~~~~rf~D~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s~ 423 (514)
T KOG2055|consen 355 DS-KELLASGGTGEVYVWNLRQN---------SCLHRFVDDGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFAST 423 (514)
T ss_pred CC-cEEEEEcCCceEEEEecCCc---------ceEEEEeecCccceeeeeecCCC-ceEEeccCcceEEEeccchhhccC
Confidence 88 57778888999999999987 44555543221 23567777888 8999999999999999654 3
Q ss_pred CceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeC--CCcEEEEeCCCCcccc
Q 013827 372 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS--KGKLEIWDTLSDAGIS 420 (436)
Q Consensus 372 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~ 420 (436)
.+.++..+..-...|++|+|++|.+ +||.++. +..+++-.+.+...-.
T Consensus 424 ~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~TVFs 473 (514)
T KOG2055|consen 424 NPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCTVFS 473 (514)
T ss_pred CCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccceeeec
Confidence 3445666666677899999999998 6776664 6779998887755443
No 171
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.84 E-value=2.3e-19 Score=158.11 Aligned_cols=287 Identities=16% Similarity=0.250 Sum_probs=197.6
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
..|.+.|.++.|+.....+.++... .+..|..............+ ..+|..+.-.+....-......|+.+
T Consensus 11 ~r~~e~vc~v~w~~~eei~~~~dDh------~~~~~~~~~~~s~~~~~~p~---df~pt~~h~~~rs~~~g~~~d~~~i~ 81 (737)
T KOG1524|consen 11 NRNSEKVCCVDWSSNEEIYFVSDDH------QIFKWSDVSRDSVEVAKLPD---DFVPTDMHLGGRSSGGGKGSDTLLIC 81 (737)
T ss_pred cccceeEEeecccccceEEEeccCc------eEEEeecccchhhhhhhCCc---ccCCccccccccccCCCCCcceEEEE
Confidence 3567778899999988888777433 45555433321111111111 11111111111111112345678889
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+.||.+.+.+-. .++......|.+.|.+-.|+|+| .-|++++.||.|++|.
T Consensus 82 s~DGkf~il~k~----------------------------~rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWS 132 (737)
T KOG1524|consen 82 SNDGRFVILNKS----------------------------ARVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWS 132 (737)
T ss_pred cCCceEEEeccc----------------------------chhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEe
Confidence 999999997643 33344456899999999999998 5889999999999998
Q ss_pred CCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCC
Q 013827 230 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG 309 (436)
Q Consensus 230 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg 309 (436)
++|-...++.....+|.|++|.|+..+.+.+. .+.+.+=.+.....+..-..|.+-|.++.|++.. +++++|++|-
T Consensus 133 -rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~ 208 (737)
T KOG1524|consen 133 -RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDF 208 (737)
T ss_pred -ccchHHHHHhhcCceeEEEEECCCCCceEEec--CCeEEEeecccccceeEEeccCcEEEEeecCccc-cceeecCCce
Confidence 45544445555678999999999995555543 4566666666666666566899999999999976 7999999999
Q ss_pred cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEE
Q 013827 310 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV 389 (436)
Q Consensus 310 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 389 (436)
..++||... .+++....|..+|++++|+|+ ..++.++.. +++ ......+.|..+
T Consensus 209 kfKvWD~~G----------~~Lf~S~~~ey~ITSva~npd--~~~~v~S~n-t~R-------------~~~p~~GSifnl 262 (737)
T KOG1524|consen 209 RFKIWDAQG----------ANLFTSAAEEYAITSVAFNPE--KDYLLWSYN-TAR-------------FSSPRVGSIFNL 262 (737)
T ss_pred eEEeecccC----------cccccCChhccceeeeeeccc--cceeeeeee-eee-------------ecCCCccceEEE
Confidence 999999764 557778889999999999997 355555532 222 123356789999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccC
Q 013827 390 AFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 425 (436)
Q Consensus 390 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (436)
+||+||.. ++.|...|.+.+=.+-..+.....+..
T Consensus 263 sWS~DGTQ-~a~gt~~G~v~~A~~ieq~l~~~n~~~ 297 (737)
T KOG1524|consen 263 SWSADGTQ-ATCGTSTGQLIVAYAIEQQLVSGNLKA 297 (737)
T ss_pred EEcCCCce-eeccccCceEEEeeeehhhhhhcccee
Confidence 99999995 888888888877665555544444433
No 172
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.5e-19 Score=161.13 Aligned_cols=231 Identities=19% Similarity=0.287 Sum_probs=179.7
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
.|.|.+||+|+.||+|+||.+.++.++... ...+.|.|++|+|.+..-++.+
T Consensus 409 dp~G~wlasGsdDGtvriWEi~TgRcvr~~----------------------------~~d~~I~~vaw~P~~~~~vLAv 460 (733)
T KOG0650|consen 409 DPSGEWLASGSDDGTVRIWEIATGRCVRTV----------------------------QFDSEIRSVAWNPLSDLCVLAV 460 (733)
T ss_pred cCCcceeeecCCCCcEEEEEeecceEEEEE----------------------------eecceeEEEEecCCCCceeEEE
Confidence 789999999999999999999999988764 2456899999999865544444
Q ss_pred eCCCcEEEEeCCCC------------------------------------e-EEEEEcccCCCeEEEEEcCCCCCEEEEE
Q 013827 220 SADKQVKIWDVAAG------------------------------------K-CNLTLEHHTDKVQAVAWNHHSPQILLSG 262 (436)
Q Consensus 220 ~~dg~v~vwd~~~~------------------------------------~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 262 (436)
+....+.|.+..-| + -+...-.|...|..+.|+..| .+|++.
T Consensus 461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV 539 (733)
T KOG0650|consen 461 AVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATV 539 (733)
T ss_pred EecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEe
Confidence 44444555543211 0 011222377899999999999 888887
Q ss_pred ECC---CcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCC
Q 013827 263 SFD---RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK 339 (436)
Q Consensus 263 ~~d---~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 339 (436)
..+ ..|.|.++.......-+....+.+.++.|+|... ++++++ -..|+|||+... ..+..+.....
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kq---------elvKkL~tg~k 608 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQ---------ELVKKLLTGSK 608 (733)
T ss_pred ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhHH---------HHHHHHhcCCe
Confidence 654 4688999987766655556788899999999775 444444 457999999875 55666777778
Q ss_pred CeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 013827 340 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 340 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 413 (436)
.|..++.+|.| .-|+.|+.|+.+..||+.-... ....+..|...+++++|++.-+ |+++|+.||++.||.-
T Consensus 609 wiS~msihp~G-Dnli~gs~d~k~~WfDldlssk-Pyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 609 WISSMSIHPNG-DNLILGSYDKKMCWFDLDLSSK-PYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHG 679 (733)
T ss_pred eeeeeeecCCC-CeEEEecCCCeeEEEEcccCcc-hhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEee
Confidence 89999999998 7888999999999999986542 4556677888999999999998 7999999999999864
No 173
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.2e-19 Score=160.24 Aligned_cols=233 Identities=23% Similarity=0.328 Sum_probs=174.6
Q ss_pred cccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEE-cccCCCeEEEEEcCCC-CCEEEEEECCCcE
Q 013827 191 SIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHS-PQILLSGSFDRSV 268 (436)
Q Consensus 191 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~l~s~~~d~~i 268 (436)
.....+.||++.|+|++|+.+| .+|++|+.|-.+.|||.-..+.+..+ .+|...|.++.|-|.. ..++++|..|..|
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred chhhhhccccceecceeecCCC-CEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 3444577999999999999998 59999999999999999988888777 6899999999999853 4688899999999
Q ss_pred EEEecCCCCC----------ccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCC-CCCCcccEEEecc
Q 013827 269 VMKDARISTH----------SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD-STSQQSSFTLHAH 337 (436)
Q Consensus 269 ~~wd~~~~~~----------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~ 337 (436)
+++|+...+. ......|...|..++-.|.+++.+.++++||+++-||++....... ......+..+...
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 9999985321 2223356778889999999999999999999999999998643221 1111222233333
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc----------------eeEEee-CCCC----C-------cEEEE
Q 013827 338 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----------------SCIASR-NPKA----G-------AVFSV 389 (436)
Q Consensus 338 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~----------------~~~~~~-~~~~----~-------~v~~~ 389 (436)
.-...++..+|..+.+|++|+.|-..++||.+...+ .++..+ ++|. + .++-+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV 279 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence 355779999999999999999999999999532110 011111 2221 0 25667
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccC
Q 013827 390 AFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 425 (436)
Q Consensus 390 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (436)
.|+|+|..+|++-+.+ .|+++|+..++.....+..
T Consensus 280 tfnpNGtElLvs~~gE-hVYlfdvn~~~~~~~y~~~ 314 (758)
T KOG1310|consen 280 TFNPNGTELLVSWGGE-HVYLFDVNEDKSPTPYFLP 314 (758)
T ss_pred EECCCCcEEEEeeCCe-EEEEEeecCCCCceeecCc
Confidence 8999998877766554 6999999998877665544
No 174
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=1.2e-19 Score=150.62 Aligned_cols=250 Identities=18% Similarity=0.291 Sum_probs=176.9
Q ss_pred CCCCccccccceeccC----CceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCC-C
Q 013827 69 DDEDSEDLEDMTINPN----DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK-G 143 (436)
Q Consensus 69 ~~~~~~~v~~~~~sp~----~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~ 143 (436)
.+++++.-..++|+=| .+++|+|+..+ .|++.+........-+..|...+.. +++.|+ .
T Consensus 85 D~d~~Esfytcsw~yd~~~~~p~la~~G~~G-----vIrVid~~~~~~~~~~~ghG~sINe-----------ik~~p~~~ 148 (385)
T KOG1034|consen 85 DEDHDESFYTCSWSYDSNTGNPFLAAGGYLG-----VIRVIDVVSGQCSKNYRGHGGSINE-----------IKFHPDRP 148 (385)
T ss_pred CCCCCcceEEEEEEecCCCCCeeEEeeccee-----EEEEEecchhhhccceeccCccchh-----------hhcCCCCC
Confidence 3467777777888743 56888887665 6777777766566667777666543 334554 6
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCC
Q 013827 144 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK 223 (436)
Q Consensus 144 ~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 223 (436)
+++++++.|..|++|++++..++.. +++ +.+|.+.|.++.|+++|. ++++++.|.
T Consensus 149 qlvls~SkD~svRlwnI~~~~Cv~V---fGG---------------------~egHrdeVLSvD~~~~gd-~i~ScGmDh 203 (385)
T KOG1034|consen 149 QLVLSASKDHSVRLWNIQTDVCVAV---FGG---------------------VEGHRDEVLSVDFSLDGD-RIASCGMDH 203 (385)
T ss_pred cEEEEecCCceEEEEeccCCeEEEE---ecc---------------------cccccCcEEEEEEcCCCC-eeeccCCcc
Confidence 8999999999999999998777653 333 558999999999999985 999999999
Q ss_pred cEEEEeCCCCeE------E----------------E------EEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC-
Q 013827 224 QVKIWDVAAGKC------N----------------L------TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR- 274 (436)
Q Consensus 224 ~v~vwd~~~~~~------~----------------~------~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~- 274 (436)
++++|++...+. . . +-.-|...|.|+.|.- .++++-+-++.|..|...
T Consensus 204 slk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgk 280 (385)
T KOG1034|consen 204 SLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGK 280 (385)
T ss_pred eEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh---hheeecccCceEEEEecch
Confidence 999999973211 0 0 1123677777887763 678999999999999872
Q ss_pred CCCCc---------cceEe----eeCCee--EEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCC
Q 013827 275 ISTHS---------GFKWA----VAADVE--SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK 339 (436)
Q Consensus 275 ~~~~~---------~~~~~----~~~~i~--~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 339 (436)
-.+.+ ..... ....+. ..+|+|.+ ..++.|...|.+.+||++...... .....-.....
T Consensus 281 l~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ep~~-----~ttl~~s~~~~ 354 (385)
T KOG1034|consen 281 LEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNEPPK-----CTTLTHSKSGS 354 (385)
T ss_pred hhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCCCcc-----CceEEeccccc
Confidence 11110 00111 122333 34566655 589999999999999999874321 11111122346
Q ss_pred CeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 013827 340 AVCTISYNPLVPNLLATGSTDKMVKLWDLS 369 (436)
Q Consensus 340 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~ 369 (436)
.|...+|+.++ .+|+....|++|.-||..
T Consensus 355 tVRQ~sfS~dg-s~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 355 TVRQTSFSRDG-SILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eeeeeeecccC-cEEEEEeCCCcEEEEEee
Confidence 78899999999 899999999999999864
No 175
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.82 E-value=4.5e-19 Score=159.28 Aligned_cols=258 Identities=17% Similarity=0.252 Sum_probs=176.7
Q ss_pred ceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEE
Q 013827 79 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 158 (436)
Q Consensus 79 ~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 158 (436)
--|..+...+|+--.... ..|-+|+........--......-...++.++|-++ |...||+++.||.|++|
T Consensus 585 nGfcan~~rvAVPL~g~g---G~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPF------D~~rLAVa~ddg~i~lW 655 (1012)
T KOG1445|consen 585 NGFCANNKRVAVPLAGSG---GVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPF------DDERLAVATDDGQINLW 655 (1012)
T ss_pred CceeeccceEEEEecCCC---ceEEEEEcCCCCCCCcccccccccCceeeecccCCC------ChHHeeecccCceEEEE
Confidence 345556666665332211 267777765542111111111111223456777544 78899999999999999
Q ss_pred eCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEE
Q 013827 159 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT 238 (436)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 238 (436)
.+..+...+.. ......+..|.+.|+++.|+|-....|++++.|-+|++||+.+++....
T Consensus 656 r~~a~gl~e~~--------------------~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~ 715 (1012)
T KOG1445|consen 656 RLTANGLPENE--------------------MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSR 715 (1012)
T ss_pred EeccCCCCccc--------------------CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhe
Confidence 99876655432 3344456789999999999998778999999999999999999999999
Q ss_pred EcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE--eeeCCeeEEEeCCCCCcEEEEEe---CCCcEEE
Q 013827 239 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--AVAADVESLAWDPHAEHSFVVSL---EDGTIKG 313 (436)
Q Consensus 239 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~---~dg~i~i 313 (436)
+.+|++.|.+++|+|+| +.+++.+.||+|++|+.+......... .....-..+.|.-+|..++++|. ....|.+
T Consensus 716 l~gHtdqIf~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~ 794 (1012)
T KOG1445|consen 716 LVGHTDQIFGIAWSPDG-RRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQM 794 (1012)
T ss_pred eccCcCceeEEEECCCC-cceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhh
Confidence 99999999999999999 899999999999999998776553221 12334556778777754455543 2456888
Q ss_pred EeCCCCCCCCCCCCCcccEEEecc-CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc
Q 013827 314 FDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 373 (436)
Q Consensus 314 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~ 373 (436)
||..+... .++.+..-. ...+.--.+.+|.+.++++|-.|..|.+|.+-...+
T Consensus 795 Y~Aq~l~~-------~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 795 YDAQTLDL-------RPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred hhhhhccC-------CcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 88876521 223222111 111222345566667888999999999999876554
No 176
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=4.4e-17 Score=153.73 Aligned_cols=296 Identities=24% Similarity=0.420 Sum_probs=211.4
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCC-CCceeeecccccCcCcceeecccCCCCCCCCCc-EEE
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG-DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMA 147 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~ 147 (436)
..+...+..+.|.+.+..++.++.++ .+.+|+..... ....+..... .....+. .. ++++. +++
T Consensus 62 ~~~~~~i~~~~~~~~~~~~~~~~~d~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----~~-~~~~~~~~~ 127 (466)
T COG2319 62 RGHEDSITSIAFSPDGELLLSGSSDG-----TIKLWDLDNGEKLIKSLEGLHD---SSVSKLA-----LS-SPDGNSILL 127 (466)
T ss_pred eeccceEEEEEECCCCcEEEEecCCC-----cEEEEEcCCCceeEEEEeccCC---CceeeEE-----EE-CCCcceEEe
Confidence 46788999999999999999988665 66666665542 1111111111 0001111 11 34555 555
Q ss_pred EeeC-CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC-CCcE
Q 013827 148 VGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA-DKQV 225 (436)
Q Consensus 148 ~g~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~v 225 (436)
..+. |+.+.+|+.... ......+..|...|..++|+|++. .+++++. |+.+
T Consensus 128 ~~~~~d~~~~~~~~~~~--------------------------~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~ 180 (466)
T COG2319 128 ASSSLDGTVKLWDLSTP--------------------------GKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTI 180 (466)
T ss_pred ccCCCCccEEEEEecCC--------------------------CeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCce
Confidence 5444 999999999750 122223557999999999999975 7888875 9999
Q ss_pred EEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc-ceEeeeCCeeEEEeCCCCCcEEEE
Q 013827 226 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAEHSFVV 304 (436)
Q Consensus 226 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~ 304 (436)
++|++..+..+..+.+|...|.+++|+|++...+++++.|+.+++||........ ....+.... ...|+|++ ..+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~ 258 (466)
T COG2319 181 KLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-SLLAS 258 (466)
T ss_pred EEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC-CEEEE
Confidence 9999998888889988999999999999883255556999999999888555444 344444443 33899987 67889
Q ss_pred EeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCC
Q 013827 305 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG 384 (436)
Q Consensus 305 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 384 (436)
++.|+.+++|+++... .....+..|...+.++.|.|++ ..+++++.|+.+.+|+..............|..
T Consensus 259 ~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 329 (466)
T COG2319 259 GSSDGTIRLWDLRSSS--------SLLRTLSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG 329 (466)
T ss_pred ecCCCcEEEeeecCCC--------cEEEEEecCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCceEEEeeecccCC
Confidence 9999999999999762 1133336788999999999977 677778889889999988776433332246776
Q ss_pred cEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 385 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 385 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
.+..+.|.+++..+...+..|+.+.+|++....
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 330 PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred ceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 799999943324334443688999999998876
No 177
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.8e-18 Score=145.80 Aligned_cols=299 Identities=13% Similarity=0.209 Sum_probs=211.1
Q ss_pred CCcccCCCCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCC------CCCceeeecccccCcCcceeecccC
Q 013827 62 DPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG------GDPNLYVHHHIIIPAFPLCMAWLDC 135 (436)
Q Consensus 62 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (436)
.|+.....-+|.+.|.++.||.++++|++|+.+. ++.+|+..+. +...+..+| ..+-.+|++|
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~-----~~~~W~~de~~~~k~~KPI~~~~~~---H~SNIF~L~F--- 113 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSHNDRFLASGGDDM-----HGRVWNVDELMVRKTPKPIGVMEHP---HRSNIFSLEF--- 113 (609)
T ss_pred cchhhhhhhhhccccceeeeccCCeEEeecCCcc-----eeeeechHHHHhhcCCCCceeccCc---cccceEEEEE---
Confidence 4444444458999999999999999999998775 6666654432 111222222 2233467776
Q ss_pred CCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcE
Q 013827 136 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 215 (436)
Q Consensus 136 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 215 (436)
....++|.+|+.+++|..-|+++.+.+.... -....+.|..+..+|. .+.
T Consensus 114 ----~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~-------------------------~~~~~~~VY~m~~~P~-DN~ 163 (609)
T KOG4227|consen 114 ----DLENRFLYSGERWGTVIKHDIETKQSIYVAN-------------------------ENNNRGDVYHMDQHPT-DNT 163 (609)
T ss_pred ----ccCCeeEecCCCcceeEeeecccceeeeeec-------------------------ccCcccceeecccCCC-Cce
Confidence 6678899999999999999998766554321 1123458999999999 479
Q ss_pred EEEEeCCCcEEEEeCCCCe-EE--EEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEe----ee--
Q 013827 216 LASASADKQVKIWDVAAGK-CN--LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA----VA-- 286 (436)
Q Consensus 216 l~s~~~dg~v~vwd~~~~~-~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----~~-- 286 (436)
|++.+.++.|.+||.+... .+ ..+........++.|+|..+.+|++.+..+-+-+||.+.......... .+
T Consensus 164 ~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~ 243 (609)
T KOG4227|consen 164 LIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQE 243 (609)
T ss_pred EEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCccc
Confidence 9999999999999998654 22 222334567789999999989999999999999999998765543222 12
Q ss_pred -CCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccC-------CCeEEEEecCCCCCEEEEEe
Q 013827 287 -ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-------KAVCTISYNPLVPNLLATGS 358 (436)
Q Consensus 287 -~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~p~~~~~l~~~~ 358 (436)
..-..+.|+|.|. .+++--....-.+||+.+.. -++..+. |. ..+.+++|.-+ ..+++|+
T Consensus 244 ~~~~M~~~~~~~G~-Q~msiRR~~~P~~~D~~S~R--------~~V~k~D-~N~~GY~N~~T~KS~~F~~D--~~v~tGS 311 (609)
T KOG4227|consen 244 NTEWMGSLWSPSGN-QFMSIRRGKCPLYFDFISQR--------CFVLKSD-HNPNGYCNIKTIKSMTFIDD--YTVATGS 311 (609)
T ss_pred chhhhheeeCCCCC-eehhhhccCCCEEeeeeccc--------ceeEecc-CCCCcceeeeeeeeeeeecc--eeeeccC
Confidence 2236788999885 45444444455567876642 1122222 22 24566777765 4699999
Q ss_pred CCCcEEEEECCCCC---------------------ceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 359 TDKMVKLWDLSNNQ---------------------PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 359 ~d~~i~iwd~~~~~---------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
.+-.|++|.+.... ...+..+.+|.+.++.+.|+|... +|++.+-...++||.-.
T Consensus 312 D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~-~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 312 DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNN-LLVSSGVENSFKLWSDH 387 (609)
T ss_pred cccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcc-eEeccchhhheeccccc
Confidence 99999999885311 013445678999999999999887 79999999999999754
No 178
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.81 E-value=5.7e-18 Score=157.48 Aligned_cols=267 Identities=18% Similarity=0.220 Sum_probs=189.1
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCC--CceeeecccccCcCcceeecccCCCCCCCCCcEEEE
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD--PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV 148 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 148 (436)
+-...|.++.|+|..+.+++|+... .+|.+|+...... +.....+....+...+.+.|.. ++.+.-|++
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG~y~----GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~-----~~~~~~f~s 310 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGGCYN----GQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ-----NEHNTEFFS 310 (555)
T ss_pred ecCCceeEEEeccCCcceEEeeccC----ceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec-----cCCCCceEE
Confidence 4467899999999877666665544 3888888776544 3333334444445556677865 233366889
Q ss_pred eeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEE
Q 013827 149 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 228 (436)
Q Consensus 149 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vw 228 (436)
++.||.|..|+++............ ..........-...+++++|.+..++.++.|+.+|.|.-=
T Consensus 311 ~ssDG~i~~W~~~~l~~P~e~~~~~---------------~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 311 LSSDGSICSWDTDMLSLPVEGLLLE---------------SKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKG 375 (555)
T ss_pred EecCCcEeeeeccccccchhhcccc---------------cccccccccccccceeeEeeccCCCceEEEEcCCcEEEEE
Confidence 9999999999876433311111000 0000001112345689999999888899999999998773
Q ss_pred eCCCC---e-----EEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC-CCCCccceEeeeCCeeEEEeCCCCC
Q 013827 229 DVAAG---K-----CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR-ISTHSGFKWAVAADVESLAWDPHAE 299 (436)
Q Consensus 229 d~~~~---~-----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~i~~~~~~~~~~ 299 (436)
+-... . ....+..|.++|+++.++|-+..++++++ |-++++|... ...+..........+++++|+|..+
T Consensus 376 ~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp 454 (555)
T KOG1587|consen 376 CRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP 454 (555)
T ss_pred eccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCc
Confidence 32221 1 12344568899999999999966666666 9999999988 4444444445566699999999988
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 013827 300 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 300 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~ 370 (436)
.+|+++..+|.+.+||+.... ..++.+...+....+.+.|++.+ .+|++|...|++.+|++..
T Consensus 455 avF~~~d~~G~l~iWDLl~~~-------~~Pv~s~~~~~~~l~~~~~s~~g-~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 455 AVFATVDGDGNLDIWDLLQDD-------EEPVLSQKVCSPALTRVRWSPNG-KLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eEEEEEcCCCceehhhhhccc-------cCCcccccccccccceeecCCCC-cEEEEecCCCcEEEEEcCc
Confidence 899999999999999998774 35556665566777888999988 8999999999999999964
No 179
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1e-17 Score=133.56 Aligned_cols=243 Identities=16% Similarity=0.211 Sum_probs=173.5
Q ss_pred CCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 139 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 139 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
++|.+++|++|..+|.|.+..+.+...-. ...+.+..+...++|.++|+.++|+.+ +|++
T Consensus 18 ~sp~~~~l~agn~~G~iav~sl~sl~s~s-----------------a~~~gk~~iv~eqahdgpiy~~~f~d~---~Lls 77 (325)
T KOG0649|consen 18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGS-----------------AEPPGKLKIVPEQAHDGPIYYLAFHDD---FLLS 77 (325)
T ss_pred hCCcceEEEEecCCCeEEEEEehhhhccc-----------------cCCCCCcceeeccccCCCeeeeeeehh---heee
Confidence 38999999999999999999987532211 112334455566899999999999943 6777
Q ss_pred EeCCCcEEEEeCCCCeE------EEEE--ccc-----CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEee
Q 013827 219 ASADKQVKIWDVAAGKC------NLTL--EHH-----TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV 285 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~------~~~~--~~~-----~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 285 (436)
|+. |.|+-|..+.... .... ..| -..|++|...|.. +-++.++.|+.++-||+++++......+|
T Consensus 78 ~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~r~~rGH 155 (325)
T KOG0649|consen 78 GGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQREYRGH 155 (325)
T ss_pred ccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEEEEEEcCC
Confidence 775 9999998754321 1111 112 2468899999988 45566668999999999999999989999
Q ss_pred eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccC-CCeEEEEecCCCCCEEEEEeCCCcEE
Q 013827 286 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGSTDKMVK 364 (436)
Q Consensus 286 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~d~~i~ 364 (436)
...+.++.--... ..+++|++||++|+||.++.+........+....+..|- ..|-+++-+. .+|++|+ ...+.
T Consensus 156 tDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCGg-Gp~ls 230 (325)
T KOG0649|consen 156 TDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCGG-GPKLS 230 (325)
T ss_pred cceeeeeeecccC-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC---ceEEecC-CCcee
Confidence 9999999874433 369999999999999999986533322222222222222 3466676663 6777665 45699
Q ss_pred EEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 365 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 365 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
+|.++..+..+++.+++ ++..+.|..| .+++++..+.+.-|.+.
T Consensus 231 lwhLrsse~t~vfpipa---~v~~v~F~~d---~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 231 LWHLRSSESTCVFPIPA---RVHLVDFVDD---CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred EEeccCCCceEEEeccc---ceeEeeeecc---eEEEeccccceeeeeec
Confidence 99999999877777766 5677788766 35567777777777764
No 180
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=2.1e-16 Score=143.58 Aligned_cols=242 Identities=10% Similarity=0.110 Sum_probs=153.3
Q ss_pred CCCCcEEEEee-CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 140 REKGNFMAVGS-MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 140 s~~~~~l~~g~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
+|++++|++++ .++.|.+|+++....+..... . ........++|+|+++ +|++
T Consensus 43 spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~------------------------~-~~~~~p~~i~~~~~g~-~l~v 96 (330)
T PRK11028 43 SPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE------------------------S-PLPGSPTHISTDHQGR-FLFS 96 (330)
T ss_pred CCCCCEEEEEECCCCcEEEEEECCCCceEEeee------------------------e-cCCCCceEEEECCCCC-EEEE
Confidence 89999987765 578999999863211111000 0 1223456899999975 5555
Q ss_pred Ee-CCCcEEEEeCCCC----eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccc------eEeeeC
Q 013827 219 AS-ADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF------KWAVAA 287 (436)
Q Consensus 219 ~~-~dg~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~------~~~~~~ 287 (436)
++ .++.|.+|++++. +.+..+. +......++++|++..++++...++.|.+||+.+...... ......
T Consensus 97 ~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~ 175 (330)
T PRK11028 97 ASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGA 175 (330)
T ss_pred EEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCC
Confidence 54 5889999999742 2233333 2345677899999944445666679999999986432210 112345
Q ss_pred CeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEecc------CCCeEEEEecCCCCCEEEEEeC-C
Q 013827 288 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH------DKAVCTISYNPLVPNLLATGST-D 360 (436)
Q Consensus 288 ~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~p~~~~~l~~~~~-d 360 (436)
....++|+|++..++++...++.|.+|++...... ...+..+..+ ......+.++|++ ++|+++.. +
T Consensus 176 ~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~i~~~pdg-~~lyv~~~~~ 249 (330)
T PRK11028 176 GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE-----IECVQTLDMMPADFSDTRWAADIHITPDG-RHLYACDRTA 249 (330)
T ss_pred CCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC-----EEEEEEEecCCCcCCCCccceeEEECCCC-CEEEEecCCC
Confidence 57789999988644455455999999999742100 0112222211 1223468899998 77777754 7
Q ss_pred CcEEEEECCCCCc--eeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 361 KMVKLWDLSNNQP--SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 361 ~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
+.|.+|++..... ..+..... ......++++|+|++++++...+++|.+|++..
T Consensus 250 ~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 250 SLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 8999999865431 11222221 124567899999998676666699999998853
No 181
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=6.2e-17 Score=151.15 Aligned_cols=302 Identities=16% Similarity=0.173 Sum_probs=201.6
Q ss_pred cccceeccCCceEEEEEecCCcceeEEEEEecCCCC----CCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeC
Q 013827 76 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG----DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 151 (436)
Q Consensus 76 v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 151 (436)
-..+.+++.|.+.+..... .+++|...... ....-.+|... ..|.+. ||+++++|+|..
T Consensus 163 ~~~I~~~~~ge~~~i~~~~------~~~~~~v~~~~~~~~~~~~~~~Htf~----~t~~~~-------spn~~~~Aa~d~ 225 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHMC------KIHIYFVPKHTKHTSSRDITVHHTFN----ITCVAL-------SPNERYLAAGDS 225 (792)
T ss_pred CccEEEcCCceEEEEEEee------eEEEEEecccceeeccchhhhhhccc----ceeEEe-------ccccceEEEecc
Confidence 5678888999888887655 45555544421 00111222211 234443 999999999999
Q ss_pred CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCC
Q 013827 152 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 231 (436)
Q Consensus 152 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~ 231 (436)
||.|.+|.--..+. .......+.-|...|++++|+++|. +|++|+..|.+.+|.++
T Consensus 226 dGrI~vw~d~~~~~-----------------------~~~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 226 DGRILVWRDFGSSD-----------------------DSETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGVLVLWQLE 281 (792)
T ss_pred CCcEEEEecccccc-----------------------ccccceEEEecccccceeEEecCCc-eEeecccceEEEEEeec
Confidence 99999997543111 1112223556999999999999985 99999999999999999
Q ss_pred CCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE-----------eeeCCeeEEEeCCCCCc
Q 013827 232 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-----------AVAADVESLAWDPHAEH 300 (436)
Q Consensus 232 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~ 300 (436)
+++ .+.+..-.++|..+.++|++ .+.+....|+.|.+....+........ ...+-.+.++++|.. +
T Consensus 282 T~~-kqfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~-~ 358 (792)
T KOG1963|consen 282 TGK-KQFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT-N 358 (792)
T ss_pred CCC-cccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCC-C
Confidence 988 56667788999999999999 788888889999998775433221111 123446677888843 5
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCC-------------------------------------------------------
Q 013827 301 SFVVSLEDGTIKGFDIRTAKSDPDS------------------------------------------------------- 325 (436)
Q Consensus 301 ~~~~~~~dg~i~i~d~~~~~~~~~~------------------------------------------------------- 325 (436)
.++-.+..|.|.+||+-+.....+.
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 6777888888888888765431100
Q ss_pred ---CCCcc-cEEEeccCCCeEEEEecC-CCCCEEEEEeCCCcEEEEECCCCC--------ceeEEeeCCCCCcEEEEEEc
Q 013827 326 ---TSQQS-SFTLHAHDKAVCTISYNP-LVPNLLATGSTDKMVKLWDLSNNQ--------PSCIASRNPKAGAVFSVAFS 392 (436)
Q Consensus 326 ---~~~~~-~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~~ 392 (436)
..... ......|...+...++.+ .....+++++.||.+++|-+...+ ..+......|..++++++|+
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs 518 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS 518 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence 00000 001123444444444433 332378999999999999884321 23333334578899999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCccccccc
Q 013827 393 EDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 423 (436)
Q Consensus 393 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (436)
.||. +++.+.+++|.+||..+...+....
T Consensus 519 ~dGs--lla~s~~~~Itiwd~~~~~~l~~~~ 547 (792)
T KOG1963|consen 519 QDGS--LLAVSFDDTITIWDYDTKNELLCTE 547 (792)
T ss_pred CCCc--EEEEecCCEEEEecCCChhhhhccc
Confidence 9997 4557889999999998854433333
No 182
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.3e-18 Score=143.76 Aligned_cols=198 Identities=17% Similarity=0.229 Sum_probs=156.4
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCC-CCCEEEEEECCCcEEEEecCCCCCccceE-ee--eCCe
Q 013827 214 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH-SPQILLSGSFDRSVVMKDARISTHSGFKW-AV--AADV 289 (436)
Q Consensus 214 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~--~~~i 289 (436)
+.+|++...|+|++||..+++.+..++++...+..++|... ++..+.+|+.||+|++||+|......... .. +.+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 47888888999999999999999999999999999999774 56889999999999999999876654332 22 2356
Q ss_pred eEEEeCCCCCcEEEEEe----CCCcEEEEeCCCCCCCCCCCCCccc-EEEeccCCCeEEEEecCCCCCEEEEEeCCCcEE
Q 013827 290 ESLAWDPHAEHSFVVSL----EDGTIKGFDIRTAKSDPDSTSQQSS-FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK 364 (436)
Q Consensus 290 ~~~~~~~~~~~~~~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~ 364 (436)
.+++.+-.+ +++++|+ .+-.|.+||+|..+ +++ .-...|...|+++.|+|..+++|++|+.||-|.
T Consensus 121 ~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~q--------q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 121 ICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQ--------QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred eEeeccCcC-CeEEeccccccCceEEEEEEecccc--------chhhhhhhhccCcceeEEecCCCCCeEEeecccceEE
Confidence 666665443 5777775 36789999999873 323 334679999999999999999999999999999
Q ss_pred EEECCCCCc-eeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccc
Q 013827 365 LWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 420 (436)
Q Consensus 365 iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (436)
+||+..... -.+...-.+...|.++.|+.++-..+.+-+..+++.+|+++.+.+..
T Consensus 192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence 999976431 12223334667899999999983347778889999999999888543
No 183
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.80 E-value=2.5e-18 Score=154.58 Aligned_cols=254 Identities=15% Similarity=0.231 Sum_probs=186.3
Q ss_pred CCCCcEEEE--eeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEE
Q 013827 140 REKGNFMAV--GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 217 (436)
Q Consensus 140 s~~~~~l~~--g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 217 (436)
..+..++|+ .+.-|.|-||+++....+..-.. -.+ -....|+.+.|.|.+...||
T Consensus 588 can~~rvAVPL~g~gG~iai~el~~PGrLPDgv~----------------------p~l-~Ngt~vtDl~WdPFD~~rLA 644 (1012)
T KOG1445|consen 588 CANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVM----------------------PGL-FNGTLVTDLHWDPFDDERLA 644 (1012)
T ss_pred eeccceEEEEecCCCceEEEEEcCCCCCCCcccc----------------------ccc-ccCceeeecccCCCChHHee
Confidence 445556654 34568999999986554432111 001 13467999999998888999
Q ss_pred EEeCCCcEEEEeCCCC-------eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCee
Q 013827 218 SASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVE 290 (436)
Q Consensus 218 s~~~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~ 290 (436)
.++.||.|++|.+..+ .+...+..|...|+++.|+|-....|++++.|-+|++||+++.+....+.+|.+.|.
T Consensus 645 Va~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf 724 (1012)
T KOG1445|consen 645 VATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIF 724 (1012)
T ss_pred ecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCcee
Confidence 9999999999998754 455678889999999999998778999999999999999999999888999999999
Q ss_pred EEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccC-CCeEEEEecCCCCCEEEEEeCC----CcEEE
Q 013827 291 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGSTD----KMVKL 365 (436)
Q Consensus 291 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~d----~~i~i 365 (436)
.++|+|+| +.+++.+.||+|++|..++.. ++++.-.+.. ..--.+.|.-+| +++++.+.| ..|.+
T Consensus 725 ~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e--------~pv~Eg~gpvgtRgARi~wacdg-r~viv~Gfdk~SeRQv~~ 794 (1012)
T KOG1445|consen 725 GIAWSPDG-RRIATVCKDGTLRVYEPRSRE--------QPVYEGKGPVGTRGARILWACDG-RIVIVVGFDKSSERQVQM 794 (1012)
T ss_pred EEEECCCC-cceeeeecCceEEEeCCCCCC--------CccccCCCCccCcceeEEEEecC-cEEEEecccccchhhhhh
Confidence 99999998 689999999999999999873 3443333221 223457788888 777666655 46888
Q ss_pred EECCCCCc--eeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccCCC
Q 013827 366 WDLSNNQP--SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 427 (436)
Q Consensus 366 wd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (436)
||..+-.. .....+.... .+.--.+.+|...++++|-.|..|.+|.+...+.-.-.+.++.
T Consensus 795 Y~Aq~l~~~pl~t~~lDvap-s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~ 857 (1012)
T KOG1445|consen 795 YDAQTLDLRPLYTQVLDVAP-SPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFM 857 (1012)
T ss_pred hhhhhccCCcceeeeecccC-ccccccccCCCceEEEecCCCceEEEEEecCCCceeeeccccc
Confidence 88776432 2222222211 1222245677777899999999999999977665444444443
No 184
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1e-17 Score=142.40 Aligned_cols=247 Identities=15% Similarity=0.191 Sum_probs=182.2
Q ss_pred CCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcE
Q 013827 136 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 215 (436)
Q Consensus 136 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 215 (436)
++.||.++++||+|+.|..++||+++..-.. +..+.+...-..|...|.|++|... ..+
T Consensus 61 AlqFS~N~~~L~SGGDD~~~~~W~~de~~~~--------------------k~~KPI~~~~~~H~SNIF~L~F~~~-N~~ 119 (609)
T KOG4227|consen 61 ALQFSHNDRFLASGGDDMHGRVWNVDELMVR--------------------KTPKPIGVMEHPHRSNIFSLEFDLE-NRF 119 (609)
T ss_pred eeeeccCCeEEeecCCcceeeeechHHHHhh--------------------cCCCCceeccCccccceEEEEEccC-Cee
Confidence 4455899999999999999999998631110 0112222223457789999999987 469
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEEcc--cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE---eeeCCee
Q 013827 216 LASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW---AVAADVE 290 (436)
Q Consensus 216 l~s~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~~i~ 290 (436)
+++|..+++|.+.|+++.+.+..+.. ..+.|+.+..+|.. +.|++.+.++.|.+||.+......... ..+....
T Consensus 120 ~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~ 198 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFY 198 (609)
T ss_pred EecCCCcceeEeeecccceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCccce
Confidence 99999999999999999888777752 33589999999997 899999999999999999876332222 3456688
Q ss_pred EEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE------eccCCCeEEEEecCCCCCEEEEEeCCCcEE
Q 013827 291 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL------HAHDKAVCTISYNPLVPNLLATGSTDKMVK 364 (436)
Q Consensus 291 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~ 364 (436)
.+.|+|..+.++++.+..+-+.+||.+.... ++... ......-.++.|+|+| ..|++--....-.
T Consensus 199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~--------~~~~~~~~~~L~~~~~~~M~~~~~~~G-~Q~msiRR~~~P~ 269 (609)
T KOG4227|consen 199 TAEFHPETPALILVNSETGGPNVFDRRMQAR--------PVYQRSMFKGLPQENTEWMGSLWSPSG-NQFMSIRRGKCPL 269 (609)
T ss_pred eeeecCCCceeEEeccccCCCCceeeccccc--------hHHhhhccccCcccchhhhheeeCCCC-CeehhhhccCCCE
Confidence 9999999999999999999999999998742 22221 1112234678899999 5555555555566
Q ss_pred EEECCCCCceeEEeeCCC------CCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 365 LWDLSNNQPSCIASRNPK------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 365 iwd~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
+||+.+... .++.+... ...+.+++|..|.. +++|+.+-.|++|.+...
T Consensus 270 ~~D~~S~R~-~V~k~D~N~~GY~N~~T~KS~~F~~D~~--v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 270 YFDFISQRC-FVLKSDHNPNGYCNIKTIKSMTFIDDYT--VATGSDHWGIHIWKLPRA 324 (609)
T ss_pred Eeeeecccc-eeEeccCCCCcceeeeeeeeeeeeccee--eeccCcccceEEEecCCC
Confidence 788887553 33333311 23577888987764 889999999999998643
No 185
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=5.3e-18 Score=136.75 Aligned_cols=289 Identities=16% Similarity=0.226 Sum_probs=187.6
Q ss_pred CCcccCCCCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceee-ecccccCcCcceeecccCCCCCC
Q 013827 62 DPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYV-HHHIIIPAFPLCMAWLDCPLKDR 140 (436)
Q Consensus 62 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s 140 (436)
||+..+. .|...|+++.|-.+++ |.+|...+ .+.+|.+..... ...+. ++. .++.|+.. -
T Consensus 5 dP~fvLR--p~~~~v~s~~fqa~~r-L~sg~~~G---~V~~w~lqt~r~--~~~~r~~g~-------~~it~lq~----~ 65 (323)
T KOG0322|consen 5 DPFFVLR--PHSSSVTSVLFQANER-LMSGLSVG---IVKMWVLQTERD--LPLIRLFGR-------LFITNLQS----I 65 (323)
T ss_pred CCeeEec--cccchheehhhccchh-hhcccccc---eEEEEEeecCcc--chhhhhhcc-------ceeeceee----c
Confidence 6666665 6788999999999988 45554443 356666655543 22222 222 23334322 2
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEe
Q 013827 141 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 220 (436)
Q Consensus 141 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 220 (436)
|+ ..|.+-+.|+.+.+|++.....+. -|.-.++++.|.+.. +...+
T Consensus 66 p~-d~l~tqgRd~~L~lw~ia~s~~i~------------------------------i~Si~~nslgFCrfS---l~~~~ 111 (323)
T KOG0322|consen 66 PN-DSLDTQGRDPLLILWTIAYSAFIS------------------------------IHSIVVNSLGFCRFS---LVKKP 111 (323)
T ss_pred CC-cchhhcCCCceEEEEEccCcceEE------------------------------Eeeeeccccccccce---eccCC
Confidence 43 668888999999999997533222 255556666665531 11111
Q ss_pred CCC-c-----------EEEEeCCCCeEEEEEc----ccCCCeEEEEEcCCCC--CEEEEEECCCcEEEEecCCCCCc---
Q 013827 221 ADK-Q-----------VKIWDVAAGKCNLTLE----HHTDKVQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHS--- 279 (436)
Q Consensus 221 ~dg-~-----------v~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~--- 279 (436)
... . +.+-|......+.... ...+.+.+..+..+.. -++++|-++|.+.+||+.++..+
T Consensus 112 k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~ 191 (323)
T KOG0322|consen 112 KNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQL 191 (323)
T ss_pred CcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecc
Confidence 111 1 2222222111122211 2345677777543321 35677888999999999987332
Q ss_pred -------cceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCC
Q 013827 280 -------GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 352 (436)
Q Consensus 280 -------~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 352 (436)
.....|..++.++.+.+.- ..=++|+.+..+..|.+....... +...........+..+.+-||+ +
T Consensus 192 ~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gsl-----q~~~e~~lknpGv~gvrIRpD~-K 264 (323)
T KOG0322|consen 192 PQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSL-----QIRKEITLKNPGVSGVRIRPDG-K 264 (323)
T ss_pred ccccccccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcc-----cccceEEecCCCccceEEccCC-c
Confidence 2234578899999998743 345667777788889886542111 1122333345668889999999 9
Q ss_pred EEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 013827 353 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 353 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 413 (436)
.+|+++.|++||+|..++..+ +..+..|.+.|++++|+|+.. ++|+++.|++|.+|++
T Consensus 265 IlATAGWD~RiRVyswrtl~p--LAVLkyHsagvn~vAfspd~~-lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 265 ILATAGWDHRIRVYSWRTLNP--LAVLKYHSAGVNAVAFSPDCE-LMAAASKDARISLWKL 322 (323)
T ss_pred EEeecccCCcEEEEEeccCCc--hhhhhhhhcceeEEEeCCCCc-hhhhccCCceEEeeec
Confidence 999999999999999999985 555677889999999999977 7999999999999986
No 186
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=5.4e-16 Score=140.92 Aligned_cols=275 Identities=10% Similarity=0.108 Sum_probs=162.6
Q ss_pred ccCCCCcceeeecc-eeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEEecCCcceeEEEEEecC
Q 013827 30 SNASNTSSIWLISG-VEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEES 108 (436)
Q Consensus 30 ~~~~~t~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~ 108 (436)
+..|+++++|+++. .++- .... ....+....++++|++++|+++.... ..|..|+..
T Consensus 8 ~~~~~~I~~~~~~~~g~l~---------------~~~~---~~~~~~~~~l~~spd~~~lyv~~~~~----~~i~~~~~~ 65 (330)
T PRK11028 8 SPESQQIHVWNLNHEGALT---------------LLQV---VDVPGQVQPMVISPDKRHLYVGVRPE----FRVLSYRIA 65 (330)
T ss_pred cCCCCCEEEEEECCCCcee---------------eeeE---EecCCCCccEEECCCCCEEEEEECCC----CcEEEEEEC
Confidence 46789999998852 1110 0000 11223467789999999988875533 245555544
Q ss_pred CCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeC-CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCC
Q 013827 109 DGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKG 187 (436)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (436)
... .+...........+..+.+ +|++++|++++. ++.|.+|++++.......
T Consensus 66 ~~g--~l~~~~~~~~~~~p~~i~~-------~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~------------------ 118 (330)
T PRK11028 66 DDG--ALTFAAESPLPGSPTHIST-------DHQGRFLFSASYNANCVSVSPLDKDGIPVAP------------------ 118 (330)
T ss_pred CCC--ceEEeeeecCCCCceEEEE-------CCCCCEEEEEEcCCCeEEEEEECCCCCCCCc------------------
Confidence 221 2211112222222333433 899999888764 789999999643221110
Q ss_pred CcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEE-------EEcccCCCeEEEEEcCCCCCEEE
Q 013827 188 KKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-------TLEHHTDKVQAVAWNHHSPQILL 260 (436)
Q Consensus 188 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~ 260 (436)
.... .+.....+++++|+++.++++...++.|.+||+.+...+. ... .......+.|+|++ .+++
T Consensus 119 -----~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg-~~ly 190 (330)
T PRK11028 119 -----IQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQ-QYAY 190 (330)
T ss_pred -----eeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCC-CEEE
Confidence 0001 1223467788999986555666677999999997633221 111 23446789999999 6666
Q ss_pred EEEC-CCcEEEEecCCCC-CccceE---ee------eCCeeEEEeCCCCCcEEEEE-eCCCcEEEEeCCCCCCCCCCCCC
Q 013827 261 SGSF-DRSVVMKDARIST-HSGFKW---AV------AADVESLAWDPHAEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQ 328 (436)
Q Consensus 261 s~~~-d~~i~~wd~~~~~-~~~~~~---~~------~~~i~~~~~~~~~~~~~~~~-~~dg~i~i~d~~~~~~~~~~~~~ 328 (436)
++.. ++.|.+||+.... ...... .. ......+.++|++. +++++ ..++.|.+|++...... .
T Consensus 191 v~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~-~lyv~~~~~~~I~v~~i~~~~~~-----~ 264 (330)
T PRK11028 191 CVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR-HLYACDRTASLISVFSVSEDGSV-----L 264 (330)
T ss_pred EEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC-EEEEecCCCCeEEEEEEeCCCCe-----E
Confidence 6655 9999999997421 111111 11 11233688999885 45555 55889999999654110 0
Q ss_pred cccEEEeccCCCeEEEEecCCCCCEEEEEe-CCCcEEEEECC
Q 013827 329 QSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLS 369 (436)
Q Consensus 329 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~d~~i~iwd~~ 369 (436)
..+..... ......+.++|++ ++|+++. .+++|.+|++.
T Consensus 265 ~~~~~~~~-~~~p~~~~~~~dg-~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 265 SFEGHQPT-ETQPRGFNIDHSG-KYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEeEEEec-cccCCceEECCCC-CEEEEEEccCCcEEEEEEc
Confidence 11122221 1245678999999 6666555 48999999875
No 187
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=2.6e-16 Score=133.04 Aligned_cols=231 Identities=17% Similarity=0.222 Sum_probs=170.1
Q ss_pred CCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 139 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 139 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
|+.+...|..|+.||. ++++.+..+.... .......|-.+-|+.. ++|.
T Consensus 13 ~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~---------------------------~~~~~~~IvEmLFSSS---Lvai 61 (391)
T KOG2110|consen 13 FNQDSTLLSVGSKDGY-KIFSCSPFEKCFS---------------------------KDTEGVSIVEMLFSSS---LVAI 61 (391)
T ss_pred eccceeEEEccCCCce-eEEecCchHHhhc---------------------------ccCCCeEEEEeecccc---eeEE
Confidence 4788999999998875 5777664332110 1122345666777754 5666
Q ss_pred EeCCC--cEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEee---eCCeeEEE
Q 013827 219 ASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---AADVESLA 293 (436)
Q Consensus 219 ~~~dg--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---~~~i~~~~ 293 (436)
.+.+. .+++++++.+..+..+. ...+|.++.++.+ .|+++-++. |++||+++.+........ ...+.++.
T Consensus 62 V~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~---RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS 136 (391)
T KOG2110|consen 62 VSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRK---RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALS 136 (391)
T ss_pred EecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccc---eEEEEEccc-EEEEecccceeehhhhccCCCccceEeec
Confidence 55554 49999999888777776 5678999999863 466665544 999999998877655443 33355555
Q ss_pred eCCCCCcEEEE-E-eCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCc-EEEEECCC
Q 013827 294 WDPHAEHSFVV-S-LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM-VKLWDLSN 370 (436)
Q Consensus 294 ~~~~~~~~~~~-~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~-i~iwd~~~ 370 (436)
+++.+ .+++. + ...|.|.+||..+. +++..+..|.+++.+++|+++| .+|||+++.|+ ||||.+.+
T Consensus 137 ~n~~n-~ylAyp~s~t~GdV~l~d~~nl---------~~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~ 205 (391)
T KOG2110|consen 137 PNNAN-CYLAYPGSTTSGDVVLFDTINL---------QPVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPE 205 (391)
T ss_pred cCCCC-ceEEecCCCCCceEEEEEcccc---------eeeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCC
Confidence 55544 24443 2 35789999999987 7788999999999999999999 99999999998 79999999
Q ss_pred CCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 371 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 371 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
++....+........|.+++|+|++++ |++.+..++|+||.+....
T Consensus 206 G~kl~eFRRG~~~~~IySL~Fs~ds~~-L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 206 GQKLYEFRRGTYPVSIYSLSFSPDSQF-LAASSNTETVHIFKLEKVS 251 (391)
T ss_pred ccEeeeeeCCceeeEEEEEEECCCCCe-EEEecCCCeEEEEEecccc
Confidence 985444433333457899999999995 8888899999999997654
No 188
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=8.4e-17 Score=138.35 Aligned_cols=204 Identities=18% Similarity=0.164 Sum_probs=156.4
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE
Q 013827 204 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW 283 (436)
Q Consensus 204 ~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 283 (436)
..++|+.+| ..|++++.||.+|||+......+.....|...|.++.|+|+| .+|++-+.| ..++|+.+++.......
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcC
Confidence 789999997 599999999999999988888788888899999999999999 899999999 99999999986554333
Q ss_pred --eeeCCeeEEEeCCCC---CcEEEE-EeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEE
Q 013827 284 --AVAADVESLAWDPHA---EHSFVV-SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG 357 (436)
Q Consensus 284 --~~~~~i~~~~~~~~~---~~~~~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 357 (436)
..+.....+.|..++ ..++++ -...+.|+.||+........ -...........|++++.+++| ++++.|
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~----l~~~~~~~~~~siSsl~VS~dG-kf~AlG 299 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNF----LRLRKKIKRFKSISSLAVSDDG-KFLALG 299 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccc----cchhhhhhccCcceeEEEcCCC-cEEEEe
Confidence 223345666776654 223333 33456788887766532100 1122222334579999999999 999999
Q ss_pred eCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 358 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 358 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
+.||.|.|++..+.+. .....+.|...|+.+.|+||.++ +++.+.+....|..+.-..
T Consensus 300 T~dGsVai~~~~~lq~-~~~vk~aH~~~VT~ltF~Pdsr~-~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQR-LQYVKEAHLGFVTGLTFSPDSRY-LASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred ccCCcEEEEEeceeee-eEeehhhheeeeeeEEEcCCcCc-ccccccCCceeEEEEeecc
Confidence 9999999999988774 23345679999999999999996 8888999999998886543
No 189
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=2.2e-17 Score=141.01 Aligned_cols=253 Identities=21% Similarity=0.261 Sum_probs=174.4
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCC
Q 013827 144 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK 223 (436)
Q Consensus 144 ~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 223 (436)
+.||+|+.|..|++|.+...+.... .........+..|...|+++.|+|+| .+||+|+.+|
T Consensus 27 ~~laT~G~D~~iriW~v~r~~~~~~------------------~~~V~y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g 87 (434)
T KOG1009|consen 27 NKLATAGGDKDIRIWKVNRSEPGGG------------------DMKVEYLSSLSRHTRAVNVVRFSPDG-ELLASGGDGG 87 (434)
T ss_pred cceecccCccceeeeeeeecCCCCC------------------ceeEEEeecccCCcceeEEEEEcCCc-CeeeecCCCc
Confidence 3999999999999999876544321 01234455678899999999999997 5999999999
Q ss_pred cEEEEeCC--------C--------CeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeC
Q 013827 224 QVKIWDVA--------A--------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA 287 (436)
Q Consensus 224 ~v~vwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 287 (436)
.|.+|... + ....+.+.+|...|..++|+|++ .++++++.|+.+++||+..+........|..
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~ 166 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAILDDHEH 166 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeecccccc
Confidence 99999765 2 12345667899999999999999 9999999999999999999999888889999
Q ss_pred CeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCC------------CCCCcccEEEec--cCCCeEEEEecCCCCCE
Q 013827 288 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD------------STSQQSSFTLHA--HDKAVCTISYNPLVPNL 353 (436)
Q Consensus 288 ~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~------------~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~ 353 (436)
.+..++|+|.+ +++++-+.|...+.+++...+.... .........++. -..-...++|+|+| .+
T Consensus 167 yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG-~l 244 (434)
T KOG1009|consen 167 YVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG-SL 244 (434)
T ss_pred ccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC-cE
Confidence 99999999976 6788888888777776654421100 000011111111 11234567899999 77
Q ss_pred EEEEeC----CC-----cEEEEECCCCCceeEEeeCCCCCcEEEEEEcCC-----------------CCcEEEEEeCCCc
Q 013827 354 LATGST----DK-----MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED-----------------SPFVLAIGGSKGK 407 (436)
Q Consensus 354 l~~~~~----d~-----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~~~l~s~~~dg~ 407 (436)
|++.+. .+ ..++|+-...+ .....++....++..+.|+|- .+.++|.++. ..
T Consensus 245 lvtPag~~~~g~~~~~n~tYvfsrk~l~-rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~s 322 (434)
T KOG1009|consen 245 LVTPAGLFKVGGGVFRNTSYVFSRKDLK-RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NS 322 (434)
T ss_pred EEcccceeeeCCceeeceeEeecccccc-CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ce
Confidence 776542 22 23555544322 123334444445555555441 1224555554 57
Q ss_pred EEEEeCCCCcccc
Q 013827 408 LEIWDTLSDAGIS 420 (436)
Q Consensus 408 i~iwd~~~~~~~~ 420 (436)
|+|||.++-+.+.
T Consensus 323 vyvydtq~~~P~~ 335 (434)
T KOG1009|consen 323 VYVYDTQTLEPLA 335 (434)
T ss_pred EEEeccccccceE
Confidence 9999998866544
No 190
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=5.8e-16 Score=146.04 Aligned_cols=243 Identities=32% Similarity=0.487 Sum_probs=189.3
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCC-CCcceeeecccchhhhhhcccCCCcccccccccCcc-cceeEEEe-cCCCCcEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVID-EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT-DSVLGLAW-NKEFRNIL 216 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~-~~~~~~~l 216 (436)
.+.+..++.++.|+.+.+|+..... .... +.++. ..+..+.+ ++++..++
T Consensus 74 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~ 126 (466)
T COG2319 74 SPDGELLLSGSSDGTIKLWDLDNGEKLIKS---------------------------LEGLHDSSVSKLALSSPDGNSIL 126 (466)
T ss_pred CCCCcEEEEecCCCcEEEEEcCCCceeEEE---------------------------EeccCCCceeeEEEECCCcceEE
Confidence 7789999999999999999997654 1111 22222 36777777 77764355
Q ss_pred EEEeC-CCcEEEEeCCC-CeEEEEEcccCCCeEEEEEcCCCCCEEEEEEC-CCcEEEEecCCCCCccceEeeeCCeeEEE
Q 013827 217 ASASA-DKQVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSGFKWAVAADVESLA 293 (436)
Q Consensus 217 ~s~~~-dg~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~i~~~~ 293 (436)
+..+. |+.+.+|++.. ......+..|...|..++|+|++ ..+++++. |+.+++|++...........|...+.+++
T Consensus 127 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 205 (466)
T COG2319 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLA 205 (466)
T ss_pred eccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEE
Confidence 55444 99999999998 77788888999999999999999 67888875 99999999998666665666889999999
Q ss_pred eCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccE-EEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 013827 294 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF-TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 294 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
|+|++...+++++.|+.+++||.... .... .+..|.... ...|+|++ .++++++.|+.+++|++....
T Consensus 206 ~~~~~~~~~~~~~~d~~i~~wd~~~~---------~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 206 FSPDGGLLIASGSSDGTIRLWDLSTG---------KLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred EcCCcceEEEEecCCCcEEEEECCCC---------cEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCC
Confidence 99887535555599999999988744 3344 577777775 44899998 888899999999999999776
Q ss_pred ceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccc
Q 013827 373 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 423 (436)
Q Consensus 373 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (436)
. .......|...+.++.|+|++.. +++++.|+.+.+|+...........
T Consensus 275 ~-~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 275 S-LLRTLSGHSSSVLSVAFSPDGKL-LASGSSDGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred c-EEEEEecCCccEEEEEECCCCCE-EEEeeCCCcEEEEEcCCCceEEEee
Confidence 4 22233667889999999998875 6668888999999988777655443
No 191
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.1e-15 Score=122.04 Aligned_cols=287 Identities=16% Similarity=0.206 Sum_probs=178.9
Q ss_pred ccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCC---c--eeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 75 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDP---N--LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 75 ~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
.|.+-+++|.+++|++|...+++..+.+........+.+ . .+..|+.++. .+.+ . ..+|++|
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy----~~~f-------~--d~~Lls~ 78 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIY----YLAF-------H--DDFLLSG 78 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCee----eeee-------e--hhheeec
Confidence 467789999999999999998554333333222221111 1 1233433332 2222 2 4567777
Q ss_pred eCCCcEEEEeCCCCCCC-cceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEE
Q 013827 150 SMEPAIEIWDLDVIDEV-QPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 228 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vw 228 (436)
+ ||.|+=|........ ..... + +...+...-...--.|+++-..|.. +-++.++.|+.++-|
T Consensus 79 g-dG~V~gw~W~E~~es~~~K~l----------w-----e~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~ 141 (325)
T KOG0649|consen 79 G-DGLVYGWEWNEEEESLATKRL----------W-----EVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQV 141 (325)
T ss_pred c-CceEEEeeehhhhhhccchhh----------h-----hhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEE
Confidence 6 599999998754331 10000 0 0001111101123468999999985 466667789999999
Q ss_pred eCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEe----------eeCCeeEEEeCCCC
Q 013827 229 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA----------VAADVESLAWDPHA 298 (436)
Q Consensus 229 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----------~~~~i~~~~~~~~~ 298 (436)
|+++|+..+++++|++.|.++.--... ..+++|++||++++||.++.+....... ....|.+++.+.
T Consensus 142 dlE~G~i~r~~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e-- 218 (325)
T KOG0649|consen 142 DLEDGRIQREYRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE-- 218 (325)
T ss_pred EecCCEEEEEEcCCcceeeeeeecccC-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC--
Confidence 999999999999999999999884444 4689999999999999999887653322 123466666654
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEe
Q 013827 299 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 378 (436)
Q Consensus 299 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 378 (436)
..+++| ....+.+|.++.. ++...+. -..++..+.|-. ..+++++..+.|.-|.+..-- ...
T Consensus 219 -dWlvCG-gGp~lslwhLrss---------e~t~vfp-ipa~v~~v~F~~---d~vl~~G~g~~v~~~~l~Gvl---~a~ 280 (325)
T KOG0649|consen 219 -DWLVCG-GGPKLSLWHLRSS---------ESTCVFP-IPARVHLVDFVD---DCVLIGGEGNHVQSYTLNGVL---QAN 280 (325)
T ss_pred -ceEEec-CCCceeEEeccCC---------CceEEEe-cccceeEeeeec---ceEEEeccccceeeeeeccEE---EEe
Confidence 355555 4567999999987 3333332 345577777874 678888888889989876421 112
Q ss_pred eCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 013827 379 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 379 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 412 (436)
.+......+...|+-.--.++..++....+.|+.
T Consensus 281 ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 281 IPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred ccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 2222223444555433222455666777777663
No 192
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=2.4e-18 Score=159.21 Aligned_cols=236 Identities=23% Similarity=0.368 Sum_probs=181.1
Q ss_pred CCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 139 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 139 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
|...|.++++|+.|..++||..++..++.. ..||.+.|+.++.+.. +.++++
T Consensus 198 fDrtg~~Iitgsdd~lvKiwS~et~~~lAs---------------------------~rGhs~ditdlavs~~-n~~iaa 249 (1113)
T KOG0644|consen 198 FDRTGRYIITGSDDRLVKIWSMETARCLAS---------------------------CRGHSGDITDLAVSSN-NTMIAA 249 (1113)
T ss_pred eccccceEeecCccceeeeeeccchhhhcc---------------------------CCCCccccchhccchh-hhhhhh
Confidence 478899999999999999999988776654 5589999999999988 469999
Q ss_pred EeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccc----eEeeeCCeeEE--
Q 013827 219 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF----KWAVAADVESL-- 292 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~----~~~~~~~i~~~-- 292 (436)
++.|..|++|.+.++.++..+.+|++.|++++|+|.. +.+.||++++||.+-...... ......-+.++
T Consensus 250 aS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~ 324 (1113)
T KOG0644|consen 250 ASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILF 324 (1113)
T ss_pred cccCceEEEEecCCCchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeec
Confidence 9999999999999999999999999999999999853 678999999999881111000 00001111111
Q ss_pred ------------------------EeCC----------CCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccC
Q 013827 293 ------------------------AWDP----------HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD 338 (436)
Q Consensus 293 ------------------------~~~~----------~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 338 (436)
+|.. +...+.+++-.+-.+++|++.++ .....+.+|.
T Consensus 325 ~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---------~l~H~l~ghs 395 (1113)
T KOG0644|consen 325 ENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---------QLLHNLMGHS 395 (1113)
T ss_pred cccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc---------hhhhhhcccc
Confidence 1111 11123333334556777777776 6677788899
Q ss_pred CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 339 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 339 ~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
..+..+.++|.++....+++.||...|||+-.+.+...+. .+| +.+...+||+||.. ++....-|.++|.....++.
T Consensus 396 d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~-~gh-~kl~d~kFSqdgts-~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 396 DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF-IGH-GKLVDGKFSQDGTS-IALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee-ccc-ceeeccccCCCCce-EecCCCCCceEEeccCCCcc
Confidence 9999999999998888899999999999999888766655 444 46777899999995 77677779999998876655
Q ss_pred c
Q 013827 419 I 419 (436)
Q Consensus 419 ~ 419 (436)
.
T Consensus 473 ~ 473 (1113)
T KOG0644|consen 473 Q 473 (1113)
T ss_pred c
Confidence 4
No 193
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=2.1e-17 Score=149.59 Aligned_cols=231 Identities=19% Similarity=0.310 Sum_probs=170.7
Q ss_pred CCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcE
Q 013827 136 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 215 (436)
Q Consensus 136 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 215 (436)
.++|.|||..|+.+. +..+.+||.+.+..+.+ +++|.+.|++++|+.+| ..
T Consensus 17 d~afkPDGsqL~lAA-g~rlliyD~ndG~llqt---------------------------LKgHKDtVycVAys~dG-kr 67 (1081)
T KOG1538|consen 17 DIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQP---------------------------LKGHKDTVYCVAYAKDG-KR 67 (1081)
T ss_pred eeEECCCCceEEEec-CCEEEEEeCCCcccccc---------------------------cccccceEEEEEEccCC-ce
Confidence 345589999988876 45788999998777665 77999999999999997 59
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeC
Q 013827 216 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD 295 (436)
Q Consensus 216 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~ 295 (436)
+|+|+.|..|.+|+..-. -+..+ .|++.|.||.|+|-. ..+++++.. ..-+|........ .......+.+++|.
T Consensus 68 FASG~aDK~VI~W~~klE-G~LkY-SH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~V~--K~kss~R~~~CsWt 141 (1081)
T KOG1538|consen 68 FASGSADKSVIIWTSKLE-GILKY-SHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKSVS--KHKSSSRIICCSWT 141 (1081)
T ss_pred eccCCCceeEEEeccccc-ceeee-ccCCeeeEeecCchH-HHhhhcchh-hccccChhhhhHH--hhhhheeEEEeeec
Confidence 999999999999985432 22333 499999999999988 788888754 3567876544332 23445678999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC----CCEEEEEeCCCcEEEEECCCC
Q 013827 296 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV----PNLLATGSTDKMVKLWDLSNN 371 (436)
Q Consensus 296 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~----~~~l~~~~~d~~i~iwd~~~~ 371 (436)
.+| ++++.|-.+|+|.+-+-.... ...+...-+...+|.+++|+|.. ...+++.....++.+|.+...
T Consensus 142 nDG-qylalG~~nGTIsiRNk~gEe-------k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~ 213 (1081)
T KOG1538|consen 142 NDG-QYLALGMFNGTISIRNKNGEE-------KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK 213 (1081)
T ss_pred CCC-cEEEEeccCceEEeecCCCCc-------ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce
Confidence 988 799999999999887543221 12222333467899999999964 247888888888888888754
Q ss_pred CceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 013827 372 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 372 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 413 (436)
. +..-..-.-...|+.+-++|.| +..||.|+.+++|.-
T Consensus 214 ~---Igk~r~L~FdP~CisYf~NGEy-~LiGGsdk~L~~fTR 251 (1081)
T KOG1538|consen 214 Q---IGKDRALNFDPCCISYFTNGEY-ILLGGSDKQLSLFTR 251 (1081)
T ss_pred e---ecccccCCCCchhheeccCCcE-EEEccCCCceEEEee
Confidence 3 2111111223558899999997 556999999999864
No 194
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.77 E-value=2.8e-16 Score=130.44 Aligned_cols=248 Identities=19% Similarity=0.249 Sum_probs=183.4
Q ss_pred CcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeE
Q 013827 126 FPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG 205 (436)
Q Consensus 126 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 205 (436)
...|.+| ++|...+|++.....|.||.....+.. ...+.+..|...|++
T Consensus 12 pitchAw-------n~drt~iAv~~~~~evhiy~~~~~~~w------------------------~~~htls~Hd~~vtg 60 (361)
T KOG1523|consen 12 PITCHAW-------NSDRTQIAVSPNNHEVHIYSMLGADLW------------------------EPAHTLSEHDKIVTG 60 (361)
T ss_pred ceeeeee-------cCCCceEEeccCCceEEEEEecCCCCc------------------------eeceehhhhCcceeE
Confidence 4468888 899999999999999999998754433 344457789999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeC-CCC--eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc---
Q 013827 206 LAWNKEFRNILASASADKQVKIWDV-AAG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS--- 279 (436)
Q Consensus 206 ~~~~~~~~~~l~s~~~dg~v~vwd~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~--- 279 (436)
++|+|.. +.|++|+.|..-+||.. ..+ ++.-.+..++..++++.|+|.+ +.|++|+....|.+|-.+...--
T Consensus 61 vdWap~s-nrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVs 138 (361)
T KOG1523|consen 61 VDWAPKS-NRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVS 138 (361)
T ss_pred EeecCCC-CceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehh
Confidence 9999995 68999999999999998 433 3445566789999999999999 89999999999999988765432
Q ss_pred -cceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCC---------CCCCCcccEEEeccCCCeEEEEecCC
Q 013827 280 -GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP---------DSTSQQSSFTLHAHDKAVCTISYNPL 349 (436)
Q Consensus 280 -~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~p~ 349 (436)
.....+.+.|++++|+|++ -++++|+.|+..++|..--..... ..+..+.+.++....+.+..+.|+|+
T Consensus 139 KhikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s 217 (361)
T KOG1523|consen 139 KHIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS 217 (361)
T ss_pred hhhCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence 2234567889999999976 689999999999999753221111 11122334444456788999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 013827 350 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 411 (436)
Q Consensus 350 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 411 (436)
| ..|+-.+.|..+.+-|....... +.......-+..++.|-.+.. ++.++.|..-.++
T Consensus 218 G-~~lawv~Hds~v~~~da~~p~~~-v~~~~~~~lP~ls~~~ise~~--vv~ag~~c~P~lf 275 (361)
T KOG1523|consen 218 G-NRLAWVGHDSTVSFVDAAGPSER-VQSVATAQLPLLSVSWISENS--VVAAGYDCGPVLF 275 (361)
T ss_pred C-CEeeEecCCCceEEeecCCCchh-ccchhhccCCceeeEeecCCc--eeecCCCCCceEE
Confidence 9 89999999999999998766421 112222224777777776654 4445555333333
No 195
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.9e-15 Score=127.56 Aligned_cols=305 Identities=16% Similarity=0.234 Sum_probs=191.8
Q ss_pred ccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCC
Q 013827 73 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME 152 (436)
Q Consensus 73 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 152 (436)
+-++.-++|+|.-.-+|++..++ .|.+|+........+.. ....-+.|++|-+. .++.|++|+.
T Consensus 98 ~~dlr~~aWhqH~~~fava~ndd-----vVriy~ksst~pt~Lks----~sQrnvtclawRPl------saselavgCr- 161 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDD-----VVRIYDKSSTCPTKLKS----VSQRNVTCLAWRPL------SASELAVGCR- 161 (445)
T ss_pred hcceeeEeechhhhhhhhhccCc-----EEEEeccCCCCCceecc----hhhcceeEEEeccC------Ccceeeeeec-
Confidence 44678899999877788888887 88888877742222222 13334579999543 3556777774
Q ss_pred CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC-CCcEEEEeCC
Q 013827 153 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA-DKQVKIWDVA 231 (436)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~v~vwd~~ 231 (436)
+-|.+|..+............ ..-...+....+| ..|++++|.+||. .+++++. |..|.|||+.
T Consensus 162 ~gIciW~~s~tln~~r~~~~~-------------s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpd 226 (445)
T KOG2139|consen 162 AGICIWSDSRTLNANRNIRMM-------------STHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPD 226 (445)
T ss_pred ceeEEEEcCcccccccccccc-------------cccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCC
Confidence 568899887533322110000 0111122233456 7899999999974 7777765 5679999999
Q ss_pred CCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcE
Q 013827 232 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTI 311 (436)
Q Consensus 232 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i 311 (436)
++..+.......+.+.-+.|+|++ ..|+++.-|+..++|+.........-....+.+...+|+|.|..++++.+..-.+
T Consensus 227 tg~~~pL~~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~l 305 (445)
T KOG2139|consen 227 TGQKIPLIPKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRL 305 (445)
T ss_pred CCCcccccccCCCceeeEEEcCCC-CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceE
Confidence 988765554456778899999999 8999999999999996543332222223345899999999998888887766544
Q ss_pred EEEeCCCCCCCCCCC------CCcccEEE-----ec----cCCCeEEEEecCCCCCEEEEEeCCC--------cEEEEEC
Q 013827 312 KGFDIRTAKSDPDST------SQQSSFTL-----HA----HDKAVCTISYNPLVPNLLATGSTDK--------MVKLWDL 368 (436)
Q Consensus 312 ~i~d~~~~~~~~~~~------~~~~~~~~-----~~----~~~~v~~~~~~p~~~~~l~~~~~d~--------~i~iwd~ 368 (436)
|.+.......... ...++..+ .. .-+++.+++|.|.| .+||+.-..+ .|.+||.
T Consensus 306 --ysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~fKg~~~v~~~k~~i~~fdt 382 (445)
T KOG2139|consen 306 --YSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVIFKGQSFVLLCKLHISRFDT 382 (445)
T ss_pred --EEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC-CEEEEEEcCCchhhhhhhhhhhhcc
Confidence 4443322111100 00001111 11 13678899999999 7888765543 3667777
Q ss_pred CCCCceeEE--eeCCCCCcEEEEEEcC---CCCcEEEEEeCCCcEEEEeCC
Q 013827 369 SNNQPSCIA--SRNPKAGAVFSVAFSE---DSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 369 ~~~~~~~~~--~~~~~~~~v~~~~~~~---~~~~~l~s~~~dg~i~iwd~~ 414 (436)
+...+.... ...+ .....-++|+| +++ +|..+=+.|.+.-|++.
T Consensus 383 r~sp~vels~cg~i~-ge~P~~IsF~pl~n~g~-lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 383 RKSPPVELSYCGMIG-GEYPAYISFGPLKNEGR-LLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cccCceEEEeccccc-CCCCceEEeeecccCCc-EEEEEeccCceEeeeeE
Confidence 765432221 1111 11234456655 456 57778888888888764
No 196
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.5e-16 Score=151.00 Aligned_cols=249 Identities=20% Similarity=0.229 Sum_probs=179.1
Q ss_pred CCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCC-CCcE
Q 013827 137 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNI 215 (436)
Q Consensus 137 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~ 215 (436)
+.|+|=...++++...-.|+|||.+.++....+..- ......|+.+.+-.+ +..+
T Consensus 1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~------------------------~~~~t~Vs~l~liNe~D~aL 1125 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNG------------------------AFPDTRVSDLELINEQDDAL 1125 (1387)
T ss_pred eeecCCCceeEEcCCcceEEEEecccCceeccccCC------------------------CCCCCccceeeeecccchhh
Confidence 446787888999988889999999876665432110 023456888888553 3458
Q ss_pred EEEEeCCCcEEEEeCCC-----CeEEEEEcc-------cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc-ce
Q 013827 216 LASASADKQVKIWDVAA-----GKCNLTLEH-------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FK 282 (436)
Q Consensus 216 l~s~~~dg~v~vwd~~~-----~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~ 282 (436)
+++|+.||.|+||+--. .+.+....+ ..+.-.-+.|.... .+|++++.-..|++||........ ..
T Consensus 1126 lLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~~~diP 1204 (1387)
T KOG1517|consen 1126 LLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQVVADIP 1204 (1387)
T ss_pred eeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEecccceeEeecc
Confidence 99999999999997432 223332221 11111346777766 456666668899999998766543 22
Q ss_pred EeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCC--eEEEEecCCCCCEEEEEeCC
Q 013827 283 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGSTD 360 (436)
Q Consensus 283 ~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~p~~~~~l~~~~~d 360 (436)
.+....++++.-+...++.+++|..||.|++||.|.... ...+.....|+.. |..+.+.+.|-..|++|+.|
T Consensus 1205 ~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~------ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1205 YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP------DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred cCCCccceeecccccCCceEEEeecCCceEEeecccCCc------cccceeecccCCcccceeEEeecCCCcceeeeccC
Confidence 345566788877666668999999999999999998742 1346677778877 99999999885579999999
Q ss_pred CcEEEEECCCCCceeEEeeCCCC--C-cEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 361 KMVKLWDLSNNQPSCIASRNPKA--G-AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 361 ~~i~iwd~~~~~~~~~~~~~~~~--~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
|.|++||++............|. + .++++..+++.+ ++|+|+. +.|+||++...+.
T Consensus 1279 G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l 1337 (1387)
T KOG1517|consen 1279 GDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQL 1337 (1387)
T ss_pred CeEEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhh
Confidence 99999999985333333333332 3 599999999999 7998888 9999999976554
No 197
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=2.3e-17 Score=146.61 Aligned_cols=266 Identities=20% Similarity=0.307 Sum_probs=183.4
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCC----C--CCceeeecccccCcCcceeecccCCCCCCCCCc
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG----G--DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN 144 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 144 (436)
.|.+.|++++|+|....|++++.++. +++|.++.... . ....+..|. ..++|+.. ++++.
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~---lk~WnLqk~~~s~~~~~epi~tfraH~----gPVl~v~v-------~~n~~ 357 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGT---LKLWNLQKAKKSAEKDVEPILTFRAHE----GPVLCVVV-------PSNGE 357 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccc---hhhhhhcccCCccccceeeeEEEeccc----CceEEEEe-------cCCce
Confidence 57789999999999999999988863 35555521111 0 111233333 33467766 78999
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCc
Q 013827 145 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ 224 (436)
Q Consensus 145 ~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 224 (436)
.+.+|+-||+|+.|++....... .......+...+.||.+.|+.+++++. +..|++++.||+
T Consensus 358 ~~ysgg~Dg~I~~w~~p~n~dp~-----------------ds~dp~vl~~~l~Ghtdavw~l~~s~~-~~~Llscs~DgT 419 (577)
T KOG0642|consen 358 HCYSGGIDGTIRCWNLPPNQDPD-----------------DSYDPSVLSGTLLGHTDAVWLLALSST-KDRLLSCSSDGT 419 (577)
T ss_pred EEEeeccCceeeeeccCCCCCcc-----------------cccCcchhccceeccccceeeeeeccc-ccceeeecCCce
Confidence 99999999999999886322211 111234555668899999999999998 468999999999
Q ss_pred EEEEeCCCCeEEEEEcc--cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE-------eeeCCeeEEEeC
Q 013827 225 VKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-------AVAADVESLAWD 295 (436)
Q Consensus 225 v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-------~~~~~i~~~~~~ 295 (436)
+++|+.....+ ..+.. ..+...++.+-.....+.++...-+.-.+.++.......... .....+..+.++
T Consensus 420 vr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~ 498 (577)
T KOG0642|consen 420 VRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSH 498 (577)
T ss_pred EEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEec
Confidence 99999876655 33322 223345565544332233333333333334443332222111 112447788889
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCcee
Q 013827 296 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 375 (436)
Q Consensus 296 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~ 375 (436)
|.. .+.+++..|+.|+++|..++ .++.....|...++++++.|+| -+|++++.|+.+++|.+.... +
T Consensus 499 ~~~-~~~~~~hed~~Ir~~dn~~~---------~~l~s~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~--~ 565 (577)
T KOG0642|consen 499 PTA-DITFTAHEDRSIRFFDNKTG---------KILHSMVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKT--C 565 (577)
T ss_pred CCC-CeeEecccCCceeccccccc---------ccchheeeccceecceeecCCC-ceEEeecCCceeehhhccchh--e
Confidence 977 58999999999999999988 7788899999999999999999 799999999999999987655 4
Q ss_pred EEeeCCC
Q 013827 376 IASRNPK 382 (436)
Q Consensus 376 ~~~~~~~ 382 (436)
+.....|
T Consensus 566 ~~es~~~ 572 (577)
T KOG0642|consen 566 VLESTAH 572 (577)
T ss_pred eeccccc
Confidence 4444444
No 198
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=5.5e-17 Score=141.68 Aligned_cols=308 Identities=14% Similarity=0.177 Sum_probs=211.1
Q ss_pred CCCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCC-ceeeecccccCcCcceeecccCCCCCCCCCcEE
Q 013827 68 KDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDP-NLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM 146 (436)
Q Consensus 68 ~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 146 (436)
+...|.+.|..+.|+..|..|++++.+. +|.+|+-...... .....|...+ .-..|++ ..+.+-+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~-----~vv~WdW~~~~~~l~f~SGH~~Nv----fQaKFiP-----~s~d~ti 202 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDL-----QVVVWDWVSGSPKLSFESGHCNNV----FQAKFIP-----FSGDRTI 202 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccc-----eEEeehhhccCcccccccccccch----hhhhccC-----CCCCcCc
Confidence 3457899999999999999999998774 5555544332111 1112221111 1112332 2355668
Q ss_pred EEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEE
Q 013827 147 AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVK 226 (436)
Q Consensus 147 ~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 226 (436)
++++.||.|++=.+........ ...+..|.++|.-++.-|+.+..|.+++.|+.+.
T Consensus 203 ~~~s~dgqvr~s~i~~t~~~e~------------------------t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~ 258 (559)
T KOG1334|consen 203 VTSSRDGQVRVSEILETGYVEN------------------------TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVF 258 (559)
T ss_pred eeccccCceeeeeeccccceec------------------------ceecccccCccceeeecCCCCCccccccccccee
Confidence 9999999999977654333321 2224579999999999999888999999999999
Q ss_pred EEeCCCCeEEEEE---cccCC---CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc------cceE------eeeCC
Q 013827 227 IWDVAAGKCNLTL---EHHTD---KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS------GFKW------AVAAD 288 (436)
Q Consensus 227 vwd~~~~~~~~~~---~~~~~---~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~------~~~~------~~~~~ 288 (436)
-.|+..+.+...+ ..+.. ....++..|...+.+++++.|..+++||.+.-... ..+. ...-.
T Consensus 259 ~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ 338 (559)
T KOG1334|consen 259 HIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVN 338 (559)
T ss_pred eeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCccc
Confidence 9999877544333 22333 56889999988789999999999999998753322 1111 22446
Q ss_pred eeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCC---CCcccE-EEeccCC--CeEEEEe-cCCCCCEEEEEeCCC
Q 013827 289 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST---SQQSSF-TLHAHDK--AVCTISY-NPLVPNLLATGSTDK 361 (436)
Q Consensus 289 i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~-~~~~~~~--~v~~~~~-~p~~~~~l~~~~~d~ 361 (436)
|++++++.++. -++++..|-.|+++.-..+......+ ....+. .+++|.. .|..+-| -|.. .++++|+.=|
T Consensus 339 ITgl~Ysh~~s-ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCG 416 (559)
T KOG1334|consen 339 ITGLVYSHDGS-ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCG 416 (559)
T ss_pred ceeEEecCCcc-ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccc
Confidence 99999997664 46666777788988443332111100 112222 2677764 4666655 4555 7999999999
Q ss_pred cEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 362 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 362 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
.|.||+-.+++.+.. ..+....|+||.=+|--+ +||++|-|..|+||...+.+.
T Consensus 417 hIFiW~K~t~eii~~--MegDr~VVNCLEpHP~~P-vLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 417 HIFIWDKKTGEIIRF--MEGDRHVVNCLEPHPHLP-VLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred eEEEEecchhHHHHH--hhcccceEeccCCCCCCc-hhhccCCccceeeecCCcccc
Confidence 999999999985444 344444899999999999 799999999999999855443
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=4.7e-16 Score=145.68 Aligned_cols=236 Identities=16% Similarity=0.116 Sum_probs=148.5
Q ss_pred eEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCC---CcEEEEeCCCCCCCcceeeecccc
Q 013827 100 LEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGID 176 (436)
Q Consensus 100 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~vw~~~~~~~~~~~~~~~~~~ 176 (436)
.+|++++...... .....+.. ......| ||||+.||..+.+ ..|++||+.+++...
T Consensus 184 ~~i~i~d~dg~~~-~~lt~~~~----~v~~p~w-------SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~--------- 242 (429)
T PRK01742 184 YEVRVADYDGFNQ-FIVNRSSQ----PLMSPAW-------SPDGSKLAYVSFENKKSQLVVHDLRSGARKV--------- 242 (429)
T ss_pred EEEEEECCCCCCc-eEeccCCC----ccccceE-------cCCCCEEEEEEecCCCcEEEEEeCCCCceEE---------
Confidence 5788887655422 22222221 1233444 9999999988754 469999997643211
Q ss_pred hhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEE--eCCCCeEEEEEcccCCCeEEEEEcCC
Q 013827 177 EEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW--DVAAGKCNLTLEHHTDKVQAVAWNHH 254 (436)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~ 254 (436)
...+.+| ...++|+|+|..++++.+.+|.+.|| |+.+++ ...+..+...+....|+|+
T Consensus 243 ----------------l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpD 302 (429)
T PRK01742 243 ----------------VASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPD 302 (429)
T ss_pred ----------------EecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCC
Confidence 1112233 34689999986444445578876555 666555 4556667777889999999
Q ss_pred CCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE
Q 013827 255 SPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL 334 (436)
Q Consensus 255 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 334 (436)
|..+++++..++...+|++...........+.. ....|+|++. .++..+.++ +.+||+.++. .. .+
T Consensus 303 G~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~-~ia~~~~~~-i~~~Dl~~g~---------~~-~l 368 (429)
T PRK01742 303 GQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGK-TLVMINGDN-VVKQDLTSGS---------TE-VL 368 (429)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCC-EEEEEcCCC-EEEEECCCCC---------eE-Ee
Confidence 944445555678889998765433222222222 4578999985 555555554 5669998762 11 11
Q ss_pred eccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC--CCCceeEEeeCCCCCcEEEEEEcCC
Q 013827 335 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS--NNQPSCIASRNPKAGAVFSVAFSED 394 (436)
Q Consensus 335 ~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~ 394 (436)
... .....+.|+|++ .+|+.++.++.+.+|++. +++ ....+..|.+.+...+|+|-
T Consensus 369 t~~-~~~~~~~~sPdG-~~i~~~s~~g~~~~l~~~~~~G~--~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 369 SST-FLDESPSISPNG-IMIIYSSTQGLGKVLQLVSADGR--FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred cCC-CCCCCceECCCC-CEEEEEEcCCCceEEEEEECCCC--ceEEccCCCCCCCCcccCCC
Confidence 111 123467899999 899998889988888763 333 45556677778889999985
No 200
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=7.1e-16 Score=128.47 Aligned_cols=291 Identities=15% Similarity=0.235 Sum_probs=185.2
Q ss_pred cceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEE-EeeCCCcEE
Q 013827 78 DMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA-VGSMEPAIE 156 (436)
Q Consensus 78 ~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~g~~dg~i~ 156 (436)
-..|||+|+++|+.... ++.+-+..+-....++..- .....+.| ..|.-+++ ....++.|.
T Consensus 13 ~c~fSp~g~yiAs~~~y------rlviRd~~tlq~~qlf~cl-----dki~yieW-------~ads~~ilC~~yk~~~vq 74 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY------RLVIRDSETLQLHQLFLCL-----DKIVYIEW-------KADSCHILCVAYKDPKVQ 74 (447)
T ss_pred ceeECCCCCeeeeeeee------EEEEeccchhhHHHHHHHH-----HHhhheee-------eccceeeeeeeeccceEE
Confidence 35899999999999654 5555555443211222111 11123556 56666555 456788999
Q ss_pred EEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEE
Q 013827 157 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN 236 (436)
Q Consensus 157 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~ 236 (436)
+|++...+-.. ........+.+++|+|+|+.+|.+..-|-.|.||.+.+.+..
T Consensus 75 vwsl~Qpew~c---------------------------kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 75 VWSLVQPEWYC---------------------------KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred EEEeecceeEE---------------------------EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 99987433221 123456789999999999889999999999999999886653
Q ss_pred EEEcccCCCeEEEEEcCCCCCEEEEEECC------------------------------------CcEEEEecCCCCCcc
Q 013827 237 LTLEHHTDKVQAVAWNHHSPQILLSGSFD------------------------------------RSVVMKDARISTHSG 280 (436)
Q Consensus 237 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------------------------------------~~i~~wd~~~~~~~~ 280 (436)
. ++.....+..++|+|+| ++.+.++.- ..+.+||.--.-.+
T Consensus 128 ~-~~~pK~~~kg~~f~~dg-~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv- 204 (447)
T KOG4497|consen 128 L-LPHPKTNVKGYAFHPDG-QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV- 204 (447)
T ss_pred E-ecccccCceeEEECCCC-ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee-
Confidence 3 33334456888888888 666555432 22344443211111
Q ss_pred ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCC------------------------------------
Q 013827 281 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD------------------------------------ 324 (436)
Q Consensus 281 ~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~------------------------------------ 324 (436)
......-.+..++|+|.+ +++++|+.|+.+|+.+--+.+...+
T Consensus 205 ~aYe~~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~ 283 (447)
T KOG4497|consen 205 YAYERGLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD 283 (447)
T ss_pred eeeeeccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCc
Confidence 123345678899999976 7999999999998866443322000
Q ss_pred --C---CC----------CcccEEEe------ccCCCeEEEEecCCCCCEEEEEeC--CCcEEEEECCCCCceeEEeeCC
Q 013827 325 --S---TS----------QQSSFTLH------AHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSNNQPSCIASRNP 381 (436)
Q Consensus 325 --~---~~----------~~~~~~~~------~~~~~v~~~~~~p~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~ 381 (436)
. .. ...+..++ ...-.+.-++|++|. .+++|-.. -+.+.+||++..+. ...-.
T Consensus 284 ~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~l---~avLi 359 (447)
T KOG4497|consen 284 LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNALWLWDLQNLKL---HAVLI 359 (447)
T ss_pred cccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCceEEEEechhhhh---hhhhh
Confidence 0 00 00001111 112346678999998 78887654 35699999998763 22333
Q ss_pred CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 382 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 382 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
...+|....|+|.... |+.+.....+++|.......+...
T Consensus 360 Qk~piraf~WdP~~pr-L~vctg~srLY~W~psg~~~V~vP 399 (447)
T KOG4497|consen 360 QKHPIRAFEWDPGRPR-LVVCTGKSRLYFWAPSGPRVVGVP 399 (447)
T ss_pred hccceeEEEeCCCCce-EEEEcCCceEEEEcCCCceEEecC
Confidence 4558999999999884 666766778999998776555443
No 201
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.74 E-value=7.2e-18 Score=146.30 Aligned_cols=232 Identities=16% Similarity=0.222 Sum_probs=188.5
Q ss_pred ecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecC
Q 013827 131 AWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK 210 (436)
Q Consensus 131 ~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 210 (436)
.|-++.+.++.+|++|+.|+..|.|..+|+.++.....+ .-...|.++.|..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei----------------------------~v~Etv~Dv~~LH 180 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI----------------------------NVMETVRDVTFLH 180 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeee----------------------------ehhhhhhhhhhhc
Confidence 334455556899999999999999999999887665443 2356788999988
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCee
Q 013827 211 EFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVE 290 (436)
Q Consensus 211 ~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~ 290 (436)
+ .+++|++ ...-+.||| ..|..+..++.| ..|..+.|.|.. .+|++++..|.+..-|+.+++.+..+..-.+.+.
T Consensus 181 n-eq~~AVA-QK~y~yvYD-~~GtElHClk~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~ 255 (545)
T KOG1272|consen 181 N-EQFFAVA-QKKYVYVYD-NNGTELHCLKRH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTD 255 (545)
T ss_pred c-hHHHHhh-hhceEEEec-CCCcEEeehhhc-Cchhhhcccchh-heeeecccCCceEEEeechhhhhHHHHccCCccc
Confidence 7 4566655 457899999 557777888755 578999999998 8999999999999999999999887777788899
Q ss_pred EEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 013827 291 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 291 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~ 370 (436)
.+.-+|.+ -.+-+|..+|+|.+|..... .++..+..|.++|.++++.++| ++++|.+.|..++|||++.
T Consensus 256 vm~qNP~N-aVih~GhsnGtVSlWSP~sk---------ePLvKiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 256 VMKQNPYN-AVIHLGHSNGTVSLWSPNSK---------EPLVKILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRN 324 (545)
T ss_pred hhhcCCcc-ceEEEcCCCceEEecCCCCc---------chHHHHHhcCCCcceEEECCCC-cEEeecccccceeEeeecc
Confidence 99999976 58889999999999998876 7788888999999999999999 9999999999999999998
Q ss_pred CCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 013827 371 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 371 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 412 (436)
... +.+... .-+...+++|..| +|| .+....|.||.
T Consensus 325 ~~q--l~t~~t-p~~a~~ls~Sqkg--lLA-~~~G~~v~iw~ 360 (545)
T KOG1272|consen 325 FYQ--LHTYRT-PHPASNLSLSQKG--LLA-LSYGDHVQIWK 360 (545)
T ss_pred ccc--cceeec-CCCcccccccccc--cee-eecCCeeeeeh
Confidence 762 222222 2356788999887 466 45556799994
No 202
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=4.5e-18 Score=157.38 Aligned_cols=228 Identities=17% Similarity=0.261 Sum_probs=174.6
Q ss_pred cccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcE
Q 013827 189 KSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV 268 (436)
Q Consensus 189 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 268 (436)
..+.+..+.+|...|.|+.|...| .++++|+.|..++||..++..+.....+|.+.|+.++.+.+. .++++++.|..|
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-TMIAAASNDKVI 256 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh-hhhhhcccCceE
Confidence 345556677999999999999997 599999999999999999999999999999999999999888 889999999999
Q ss_pred EEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCC-----CCCCCcccEEE---------
Q 013827 269 VMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP-----DSTSQQSSFTL--------- 334 (436)
Q Consensus 269 ~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~--------- 334 (436)
++|.+..+..+..+.+|.+.|++++|+|- .+.+.||++++||.+-..... ..........+
T Consensus 257 rvWrl~~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f 331 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRF 331 (1113)
T ss_pred EEEecCCCchHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccc
Confidence 99999999999999999999999999993 377899999999998211000 00000000000
Q ss_pred -----------------eccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCc
Q 013827 335 -----------------HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF 397 (436)
Q Consensus 335 -----------------~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 397 (436)
..+...+.-+.++.+...+.+++-.+-.+++|++.+++ ......+|...+..+.++|-+..
T Consensus 332 ~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~--l~H~l~ghsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ--LLHNLMGHSDEVYVLDVHPFNPR 409 (1113)
T ss_pred ccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccch--hhhhhcccccceeeeeecCCCcH
Confidence 00111111122222222344455556678889988887 45556788889999999998877
Q ss_pred EEEEEeCCCcEEEEeCCCCccccccccC
Q 013827 398 VLAIGGSKGKLEIWDTLSDAGISNRFSK 425 (436)
Q Consensus 398 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (436)
+..+++.||...|||+-.+..++.++..
T Consensus 410 i~msag~dgst~iwdi~eg~pik~y~~g 437 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDIWEGIPIKHYFIG 437 (1113)
T ss_pred hhhhccCCCceEeeecccCCcceeeecc
Confidence 7888999999999999999888776643
No 203
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.9e-16 Score=140.29 Aligned_cols=215 Identities=20% Similarity=0.299 Sum_probs=157.6
Q ss_pred CcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeE
Q 013827 126 FPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG 205 (436)
Q Consensus 126 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 205 (436)
.+.|++| +.+|.+|++|+.|-.+.|||.-..+.+..+ -.+|...|.+
T Consensus 52 CVN~LeW-------n~dG~lL~SGSDD~r~ivWd~~~~KllhsI--------------------------~TgHtaNIFs 98 (758)
T KOG1310|consen 52 CVNCLEW-------NADGELLASGSDDTRLIVWDPFEYKLLHSI--------------------------STGHTANIFS 98 (758)
T ss_pred eecceee-------cCCCCEEeecCCcceEEeecchhcceeeee--------------------------ecccccceeE
Confidence 3468888 899999999999999999998754444433 3489999999
Q ss_pred EEecCCC-CcEEEEEeCCCcEEEEeCCCC----------eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC
Q 013827 206 LAWNKEF-RNILASASADKQVKIWDVAAG----------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 274 (436)
Q Consensus 206 ~~~~~~~-~~~l~s~~~dg~v~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 274 (436)
+.|-|.. ..++++|+.|..|+++|+... +....+..|...|..++..|++++.+.++++||+|+-+|++
T Consensus 99 vKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiR 178 (758)
T KOG1310|consen 99 VKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIR 178 (758)
T ss_pred EeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeeccc
Confidence 9999853 348999999999999999842 33445577999999999999999999999999999999999
Q ss_pred CCCCccceE----------eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCC-----CC----CcccEEE-
Q 013827 275 ISTHSGFKW----------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS-----TS----QQSSFTL- 334 (436)
Q Consensus 275 ~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~-----~~----~~~~~~~- 334 (436)
......... ..--...++..+|..++++++|+.|-..++||.+........ .. ..++.-+
T Consensus 179 Eph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~ 258 (758)
T KOG1310|consen 179 EPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS 258 (758)
T ss_pred CCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec
Confidence 753221111 112357789999999999999999999999995543221100 00 0011111
Q ss_pred eccC-----------CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCce
Q 013827 335 HAHD-----------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS 374 (436)
Q Consensus 335 ~~~~-----------~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~ 374 (436)
.+|. ..++-+.|+|+|..+|++-+.+ .|+++|+...+..
T Consensus 259 p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gE-hVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 259 PGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGE-HVYLFDVNEDKSP 308 (758)
T ss_pred CccccCcccccccceeeeEEEEECCCCcEEEEeeCCe-EEEEEeecCCCCc
Confidence 1111 1256789999996666665544 7999999887653
No 204
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.72 E-value=8.1e-16 Score=127.70 Aligned_cols=209 Identities=19% Similarity=0.273 Sum_probs=166.8
Q ss_pred cccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC---eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC
Q 013827 199 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 275 (436)
Q Consensus 199 h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 275 (436)
-..+|+|.+|+++. ..+|.+.....|.||..... +...+++.|...|+.+.|+|.. +.|++++.|..-++|....
T Consensus 9 ~~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCC
Confidence 35789999999995 69999999999999998765 4678889999999999999999 8899999999999999843
Q ss_pred C---CCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCC
Q 013827 276 S---THSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 352 (436)
Q Consensus 276 ~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 352 (436)
+ ++...+..++...+++.|+|.+ +.|++|+....|.+|-++..+.- ......-+.+.+.|+++.|+|++ -
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdW-----WVsKhikkPirStv~sldWhpnn-V 159 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDW-----WVSKHIKKPIRSTVTSLDWHPNN-V 159 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccce-----ehhhhhCCccccceeeeeccCCc-c
Confidence 3 3344567889999999999976 79999999999999988765321 11122334567789999999998 8
Q ss_pred EEEEEeCCCcEEEEECC-----CCC-------c----eeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 353 LLATGSTDKMVKLWDLS-----NNQ-------P----SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 353 ~l~~~~~d~~i~iwd~~-----~~~-------~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
+|++|+.|+..++|..- ... . ....+.....+.+..+.|+|+|. .|+-.+.|..+.+=|....
T Consensus 160 LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 160 LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEEeecCCC
Confidence 99999999999999642 110 0 01222324566899999999999 6999999999999998776
Q ss_pred c
Q 013827 417 A 417 (436)
Q Consensus 417 ~ 417 (436)
.
T Consensus 239 ~ 239 (361)
T KOG1523|consen 239 S 239 (361)
T ss_pred c
Confidence 5
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.4e-16 Score=137.03 Aligned_cols=193 Identities=18% Similarity=0.257 Sum_probs=146.9
Q ss_pred CCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 139 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 139 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
|+++|..|++|+.||++|||++.+...+.. ...|...|.++.|+||| ++|++
T Consensus 152 f~~~gs~latgg~dg~lRv~~~Ps~~t~l~---------------------------e~~~~~eV~DL~FS~dg-k~las 203 (398)
T KOG0771|consen 152 FNGDGSKLATGGTDGTLRVWEWPSMLTILE---------------------------EIAHHAEVKDLDFSPDG-KFLAS 203 (398)
T ss_pred EcCCCCEeeeccccceEEEEecCcchhhhh---------------------------hHhhcCccccceeCCCC-cEEEE
Confidence 489999999999999999999876554432 44699999999999997 59999
Q ss_pred EeCCCcEEEEeCCCCeEEEEEc--ccCCCeEEEEEcCCC---CCEEEE-EECCCcEEEEecCCCCCc-----cceEeeeC
Q 013827 219 ASADKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHS---PQILLS-GSFDRSVVMKDARISTHS-----GFKWAVAA 287 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~---~~~l~s-~~~d~~i~~wd~~~~~~~-----~~~~~~~~ 287 (436)
-+.| ..+||+.+++..+.... .-......+.|+.++ .-++++ ...-+.|+.||+.....- ........
T Consensus 204 ig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~ 282 (398)
T KOG0771|consen 204 IGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK 282 (398)
T ss_pred ecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC
Confidence 9999 99999999997666654 223345667777654 123333 334466777776544331 11222345
Q ss_pred CeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 013827 288 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 367 (436)
Q Consensus 288 ~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd 367 (436)
.|.+++.+++| ++++.|+.||.|.|++..+.+ .....-+.|...|+.+.|+|+. +++++.+.|....+..
T Consensus 283 siSsl~VS~dG-kf~AlGT~dGsVai~~~~~lq--------~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 283 SISSLAVSDDG-KFLALGTMDGSVAIYDAKSLQ--------RLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTK 352 (398)
T ss_pred cceeEEEcCCC-cEEEEeccCCcEEEEEeceee--------eeEeehhhheeeeeeEEEcCCc-CcccccccCCceeEEE
Confidence 79999999988 699999999999999998762 3344557899999999999998 8999999999988887
Q ss_pred CCC
Q 013827 368 LSN 370 (436)
Q Consensus 368 ~~~ 370 (436)
+.-
T Consensus 353 l~v 355 (398)
T KOG0771|consen 353 LAV 355 (398)
T ss_pred Eee
Confidence 755
No 206
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.4e-14 Score=135.68 Aligned_cols=223 Identities=17% Similarity=0.231 Sum_probs=154.3
Q ss_pred ceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEE
Q 013827 79 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 158 (436)
Q Consensus 79 ~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 158 (436)
-.||+|++.++....+ .|.+|...++.....+..|..++... ...+. ++.-.++.+++.||.|++|
T Consensus 22 avfSnD~k~l~~~~~~------~V~VyS~~Tg~~i~~l~~~~a~l~s~----~~~~~----~~~~~~~~~~sl~G~I~vw 87 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTGN------FVKVYSTATGECITSLEDHTAPLTSV----IVLPS----SENANYLIVCSLDGTIRVW 87 (792)
T ss_pred cccccCCcEEEEeeCC------EEEEEecchHhhhhhcccccCcccee----eecCC----CccceEEEEEecCccEEEe
Confidence 4789999999888765 78888888776666555555444322 22111 2234678899999999999
Q ss_pred eCCCCCCCcceee--------e--cccc------------hh----------------------h------hh-------
Q 013827 159 DLDVIDEVQPHVI--------L--GGID------------EE----------------------K------KK------- 181 (436)
Q Consensus 159 ~~~~~~~~~~~~~--------~--~~~~------------~~----------------------~------~~------- 181 (436)
|...+........ + .... .. . ..
T Consensus 88 d~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~ 167 (792)
T KOG1963|consen 88 DWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIV 167 (792)
T ss_pred cCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEE
Confidence 9887665432100 0 0000 00 0 00
Q ss_pred -------------------hcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCC--C--eEEEE
Q 013827 182 -------------------KKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA--G--KCNLT 238 (436)
Q Consensus 182 -------------------~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~--~--~~~~~ 238 (436)
+..++.+.......-..|...+++.++||.+ .++|+|..||.|.+|.--. . .....
T Consensus 168 ~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~ 246 (792)
T KOG1963|consen 168 DNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDSETCTL 246 (792)
T ss_pred EcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecccc-ceEEEeccCCcEEEEeccccccccccceE
Confidence 0000001111111112466778999999996 5999999999999996332 1 23456
Q ss_pred EcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 239 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 318 (436)
Q Consensus 239 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 318 (436)
+.-|...|++++|+++| .+|++|+..+.+.+|.+.+++ ...+....++|..+.++|++ .+.++...|+.|.+....+
T Consensus 247 lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 247 LHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred EEecccccceeEEecCC-ceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccc
Confidence 67799999999999999 899999999999999999988 55577889999999999988 5777778899999887744
Q ss_pred C
Q 013827 319 A 319 (436)
Q Consensus 319 ~ 319 (436)
.
T Consensus 324 l 324 (792)
T KOG1963|consen 324 L 324 (792)
T ss_pred h
Confidence 3
No 207
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.71 E-value=2.4e-15 Score=133.19 Aligned_cols=283 Identities=14% Similarity=0.217 Sum_probs=183.4
Q ss_pred cccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcE
Q 013827 76 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI 155 (436)
Q Consensus 76 v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 155 (436)
+..+.++-.|..|+..-.+. +-+|.|....+....+ .....-..-|.|-++- ...-.+.+--|+.|-..|.|
T Consensus 126 ~~~~~~~~~gd~lcFnvg~~----lyv~~~~g~~~~~~pi--~k~~y~gt~P~cHdfn--~~~a~~~g~dllIGf~tGqv 197 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGRE----LYVYSYRGAADLSKPI--DKREYKGTSPTCHDFN--SFTATPKGLDLLIGFTTGQV 197 (636)
T ss_pred eeeccccCCCCEEEEecCCe----EEEEEccCcchhccch--hhhcccCCCCceeccc--ccccCCCCcceEEeeccCce
Confidence 44555555666776654442 3444444322211111 1111122234454441 11225677778889889999
Q ss_pred EEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeE
Q 013827 156 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC 235 (436)
Q Consensus 156 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~ 235 (436)
++.|....+... .......-....|+|+.|-|.+..+++.+-.+|.+.+||..
T Consensus 198 q~idp~~~~~sk-----------------------lfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~---- 250 (636)
T KOG2394|consen 198 QLIDPINFEVSK-----------------------LFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE---- 250 (636)
T ss_pred EEecchhhHHHH-----------------------hhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc----
Confidence 998865311100 00000011237899999999888888899999999999962
Q ss_pred EEEEcccCCCeEEEEE--cCCCCCEEEEEECCCcEEEEecC-CCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEE
Q 013827 236 NLTLEHHTDKVQAVAW--NHHSPQILLSGSFDRSVVMKDAR-ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 312 (436)
Q Consensus 236 ~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~ 312 (436)
+....+...| .+++ ..+.... |.-. +..+........+.|..++|+||| .++++.+.||.+|
T Consensus 251 ------~~~~~t~p~~~~~k~~-~~f~i~t-------~ksk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLR 315 (636)
T KOG2394|consen 251 ------IVCGATAPSYQALKDG-DQFAILT-------SKSKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLR 315 (636)
T ss_pred ------ccccCCCCcccccCCC-CeeEEee-------eeccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEE
Confidence 1111111112 2333 2232221 1111 112222222345689999999987 6999999999999
Q ss_pred EEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEc
Q 013827 313 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 392 (436)
Q Consensus 313 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 392 (436)
|||..+. ..+..++..-+...|++|+||| ++|++|++|.-|.||.+...+ .+..-++|.+.|..++|.
T Consensus 316 vF~fdt~---------eLlg~mkSYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf~erR--VVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 316 IFDFDTQ---------ELLGVMKSYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWSFEERR--VVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EeeccHH---------HHHHHHHhhccceEEEEEcCCc-cEEEecCCcceEEEEEeccce--EEEeccccccceeeEeec
Confidence 9999876 5566666667889999999999 999999999999999999887 677788999999999998
Q ss_pred C-----------------------------------C------------CCcEEEEEeCCCcEEEEeCCCCcccc
Q 013827 393 E-----------------------------------D------------SPFVLAIGGSKGKLEIWDTLSDAGIS 420 (436)
Q Consensus 393 ~-----------------------------------~------------~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (436)
| + -.|.+.+.+.|..+.+||+.......
T Consensus 384 pytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 384 PYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred ccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 3 0 13578899999999999998766554
No 208
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=4.4e-15 Score=139.15 Aligned_cols=202 Identities=14% Similarity=0.130 Sum_probs=134.7
Q ss_pred cCcccceeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCeE--EEEEcccCCCeEEEEEcCCCCCEEEEE-ECCCcEEE
Q 013827 197 GSHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSG-SFDRSVVM 270 (436)
Q Consensus 197 ~~h~~~v~~~~~~~~~~~~l~s~~~d---g~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~d~~i~~ 270 (436)
..|...+...+|+|+|. .|+.++.+ ..|++||+.+++. +..+.+ ....++|+|+| ..|+.+ +.+|.+.+
T Consensus 200 t~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG-~~La~~~~~~g~~~I 274 (429)
T PRK01742 200 NRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDG-SRLAFASSKDGVLNI 274 (429)
T ss_pred ccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCC-CEEEEEEecCCcEEE
Confidence 35778899999999985 66666543 3699999988754 333333 34468999999 655554 56887666
Q ss_pred E--ecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecC
Q 013827 271 K--DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP 348 (436)
Q Consensus 271 w--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 348 (436)
| |+.+.... ....+...+....|+|++..+++++..++...+|++.... .....+ .+.. ....|+|
T Consensus 275 y~~d~~~~~~~-~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~--------~~~~~l-~~~~--~~~~~Sp 342 (429)
T PRK01742 275 YVMGANGGTPS-QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG--------GGASLV-GGRG--YSAQISA 342 (429)
T ss_pred EEEECCCCCeE-eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC--------CCeEEe-cCCC--CCccCCC
Confidence 5 55544332 2334555678899999997666677778888999876431 111222 3333 4578999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC--CCcccccc
Q 013827 349 LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL--SDAGISNR 422 (436)
Q Consensus 349 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~ 422 (436)
++ ..|+..+.++ +.+||+.+++...+. ... ....+.|+|+|++ |+.++.++...+|++. ++..+++.
T Consensus 343 DG-~~ia~~~~~~-i~~~Dl~~g~~~~lt--~~~--~~~~~~~sPdG~~-i~~~s~~g~~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 343 DG-KTLVMINGDN-VVKQDLTSGSTEVLS--STF--LDESPSISPNGIM-IIYSSTQGLGKVLQLVSADGRFKARL 411 (429)
T ss_pred CC-CEEEEEcCCC-EEEEECCCCCeEEec--CCC--CCCCceECCCCCE-EEEEEcCCCceEEEEEECCCCceEEc
Confidence 99 7777776654 666999887643221 111 2346789999995 7778888888888763 45555444
No 209
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=2.1e-14 Score=119.36 Aligned_cols=236 Identities=17% Similarity=0.280 Sum_probs=162.0
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
+.|...+++|..+ -.+||+.+..+..... . +..-.-.+..+-|-.+ .+.+.|
T Consensus 14 NQD~ScFava~~~-Gfriyn~~P~ke~~~r-----------------------~--~~~~G~~~veMLfR~N--~laLVG 65 (346)
T KOG2111|consen 14 NQDHSCFAVATDT-GFRIYNCDPFKESASR-----------------------Q--FIDGGFKIVEMLFRSN--YLALVG 65 (346)
T ss_pred ccCCceEEEEecC-ceEEEecCchhhhhhh-----------------------c--cccCchhhhhHhhhhc--eEEEec
Confidence 7899999998755 5789998753221110 0 0011122333334332 233344
Q ss_pred eCC------CcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC-CccceEeeeCCeeEE
Q 013827 220 SAD------KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST-HSGFKWAVAADVESL 292 (436)
Q Consensus 220 ~~d------g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~i~~~ 292 (436)
+.+ ..|.|||=...+++.++. ...+|.++.+.++. +++. ..+.|.+|...+.- ..........+---+
T Consensus 66 Gg~~pky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~r---iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC 140 (346)
T KOG2111|consen 66 GGSRPKYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLRRDR---IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLC 140 (346)
T ss_pred CCCCCCCCCceEEEEecccCcEEEEEE-eccceeeEEEcCCe---EEEE-ecCeEEEEEcCCChhheeeeecccCCCceE
Confidence 433 479999966677787776 67899999998754 4444 46889999987443 333222222122233
Q ss_pred EeCCCCCcEE--EEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCc-EEEEECC
Q 013827 293 AWDPHAEHSF--VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM-VKLWDLS 369 (436)
Q Consensus 293 ~~~~~~~~~~--~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~-i~iwd~~ 369 (436)
+..|.....+ .-|..-|.|+|-|+..... .+...+.+|...|.|++.+.+| .++||+|..|+ |||||..
T Consensus 141 ~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~-------~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 141 SLCPTSNKSLLAFPGFKTGQVQIVDLASTKP-------NAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTE 212 (346)
T ss_pred eecCCCCceEEEcCCCccceEEEEEhhhcCc-------CCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcC
Confidence 3444332322 3356679999999987632 2356789999999999999999 99999999998 7999999
Q ss_pred CCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 370 NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 370 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
++++............|.+|+|||+..+ ||+++..|+|+||.+....
T Consensus 213 ~g~~l~E~RRG~d~A~iy~iaFSp~~s~-LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 213 DGTLLQELRRGVDRADIYCIAFSPNSSW-LAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CCcEeeeeecCCchheEEEEEeCCCccE-EEEEcCCCeEEEEEeecCC
Confidence 9997666555556678999999999994 8999999999999997654
No 210
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=5.6e-15 Score=125.98 Aligned_cols=212 Identities=16% Similarity=0.196 Sum_probs=167.9
Q ss_pred cccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCe----EEEEEcccCCCeEEEEEcCCCCCEEEEEECC--CcEEEEe
Q 013827 199 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK----CNLTLEHHTDKVQAVAWNHHSPQILLSGSFD--RSVVMKD 272 (436)
Q Consensus 199 h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--~~i~~wd 272 (436)
...+|..++.... .|++|-.+|.+.+|..+.+. ....+.. ..++..|.-++..+.++++|+.. ..+.+||
T Consensus 104 ~~~~I~gl~~~dg---~Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 104 GTKSIKGLKLADG---TLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred ccccccchhhcCC---EEEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeee
Confidence 4566777766543 68889999999999988442 2333432 35677788888877888889999 8899999
Q ss_pred cCCCCCccce---------EeeeCCeeEEEeCCC-CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeE
Q 013827 273 ARISTHSGFK---------WAVAADVESLAWDPH-AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 342 (436)
Q Consensus 273 ~~~~~~~~~~---------~~~~~~i~~~~~~~~-~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 342 (436)
+...+.+-.- ...+-.++.+.|-+. ..+.|++++.-+.+++||.+.+ ..++..+.-...+++
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q--------RRPV~~fd~~E~~is 251 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ--------RRPVAQFDFLENPIS 251 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc--------CcceeEeccccCcce
Confidence 9877433211 122345778888874 1478999999999999999976 478888888899999
Q ss_pred EEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 343 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 343 ~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
++...|.+ +++++|..-+.+..||++.++. ....+.+..+.|+++..+|.++ +++++|-|..|+|+|+.+.+.+...
T Consensus 252 ~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl-~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 252 STGLTPSG-NFIYTGNTKGQLAKFDLRGGKL-LGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred eeeecCCC-cEEEEecccchhheecccCcee-eccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecccchhhhhh
Confidence 99999999 9999999999999999999873 3334678889999999999999 5999999999999999998887765
Q ss_pred ccC
Q 013827 423 FSK 425 (436)
Q Consensus 423 ~~~ 425 (436)
+-.
T Consensus 329 YvK 331 (412)
T KOG3881|consen 329 YVK 331 (412)
T ss_pred hhh
Confidence 543
No 211
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.69 E-value=6.9e-16 Score=136.45 Aligned_cols=176 Identities=16% Similarity=0.246 Sum_probs=141.0
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEE
Q 013827 214 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA 293 (436)
Q Consensus 214 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~ 293 (436)
..++.++.||.+.+.+ +.++....+..|.+.+.+-.|+|+| .-|+++++||.|++|.-.. -..........+|.|++
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrsG-MLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRSG-MLRSTVVQNEESIRCAR 152 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEeccc-hHHHHHhhcCceeEEEE
Confidence 4788899999999987 5567777888999999999999999 8899999999999997543 33333556678899999
Q ss_pred eCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc
Q 013827 294 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 373 (436)
Q Consensus 294 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~ 373 (436)
|.|+..+.+++.+.. +.|=.+... ..+...+.|.+-|.++.|+|.. +++++|++|-..++||.....
T Consensus 153 W~p~S~~vl~c~g~h--~~IKpL~~n---------~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~~- 219 (737)
T KOG1524|consen 153 WAPNSNSIVFCQGGH--ISIKPLAAN---------SKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGAN- 219 (737)
T ss_pred ECCCCCceEEecCCe--EEEeecccc---------cceeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccCcc-
Confidence 999988777776544 444444433 3467889999999999999998 999999999999999987653
Q ss_pred eeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEE
Q 013827 374 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI 410 (436)
Q Consensus 374 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 410 (436)
++....|..+|++++|.|+. +++.++. +++++
T Consensus 220 --Lf~S~~~ey~ITSva~npd~--~~~v~S~-nt~R~ 251 (737)
T KOG1524|consen 220 --LFTSAAEEYAITSVAFNPEK--DYLLWSY-NTARF 251 (737)
T ss_pred --cccCChhccceeeeeecccc--ceeeeee-eeeee
Confidence 66677888999999999994 4565654 35554
No 212
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=3e-13 Score=114.74 Aligned_cols=234 Identities=15% Similarity=0.229 Sum_probs=162.7
Q ss_pred cccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCC-
Q 013827 74 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME- 152 (436)
Q Consensus 74 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d- 152 (436)
..+..+.|+.+...|..|+.++ .+++..+..+. +.+.. .-.....-+-| ...++|..+.+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G----yk~~~~~~~~k-----~~~~~-~~~~~IvEmLF---------SSSLvaiV~~~q 66 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG----YKIFSCSPFEK-----CFSKD-TEGVSIVEMLF---------SSSLVAIVSIKQ 66 (391)
T ss_pred cceeeeeeccceeEEEccCCCc----eeEEecCchHH-----hhccc-CCCeEEEEeec---------ccceeEEEecCC
Confidence 4566677999999999998876 34443332221 11111 11111111111 24455555443
Q ss_pred -CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCC
Q 013827 153 -PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 231 (436)
Q Consensus 153 -g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~ 231 (436)
..+++.+......+... -...+|.++.++.+ .|+++-.+ .|.|||+.
T Consensus 67 pr~Lkv~~~Kk~~~ICe~----------------------------~fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~ 114 (391)
T KOG2110|consen 67 PRKLKVVHFKKKTTICEI----------------------------FFPTSILAVRMNRK---RLVVCLEE-SIYIYDIK 114 (391)
T ss_pred CceEEEEEcccCceEEEE----------------------------ecCCceEEEEEccc---eEEEEEcc-cEEEEecc
Confidence 45788877643333221 24568999999876 46566554 49999999
Q ss_pred CCeEEEEEcc---cCCCeEEEEEcCCCCCEEEEE--ECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEe
Q 013827 232 AGKCNLTLEH---HTDKVQAVAWNHHSPQILLSG--SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL 306 (436)
Q Consensus 232 ~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~--~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 306 (436)
+.+.+.++.. +...+.++++++.+ .+++.- ...|.|.+||+.+-+.......|.+.+.+++|+++| .++|+++
T Consensus 115 ~MklLhTI~t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G-~llATAS 192 (391)
T KOG2110|consen 115 DMKLLHTIETTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDG-TLLATAS 192 (391)
T ss_pred cceeehhhhccCCCccceEeeccCCCC-ceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCC-CEEEEec
Confidence 9999888753 44456666666665 566542 246899999999999888888999999999999988 6999999
Q ss_pred CCCc-EEEEeCCCCCCCCCCCCCcccEEEeccC--CCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 013827 307 EDGT-IKGFDIRTAKSDPDSTSQQSSFTLHAHD--KAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 307 ~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~ 370 (436)
+.|+ ||+|.+.++ +.+..+.... ..|.+++|+|++ .+|++.+..++|.+|.+..
T Consensus 193 eKGTVIRVf~v~~G---------~kl~eFRRG~~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 193 EKGTVIRVFSVPEG---------QKLYEFRRGTYPVSIYSLSFSPDS-QFLAASSNTETVHIFKLEK 249 (391)
T ss_pred cCceEEEEEEcCCc---------cEeeeeeCCceeeEEEEEEECCCC-CeEEEecCCCeEEEEEecc
Confidence 9987 789999887 5566665333 457899999999 8999999999999998854
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.3e-14 Score=122.49 Aligned_cols=243 Identities=17% Similarity=0.200 Sum_probs=162.7
Q ss_pred CCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 139 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 139 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
|++.-.-+|++..|-.|++|+-.. .+... ....-...|+|++|-|.+...|+.
T Consensus 106 WhqH~~~fava~nddvVriy~kss-t~pt~--------------------------Lks~sQrnvtclawRPlsaselav 158 (445)
T KOG2139|consen 106 WHQHIIAFAVATNDDVVRIYDKSS-TCPTK--------------------------LKSVSQRNVTCLAWRPLSASELAV 158 (445)
T ss_pred echhhhhhhhhccCcEEEEeccCC-CCCce--------------------------ecchhhcceeEEEeccCCcceeee
Confidence 366666788999999999999765 11111 011345679999999998888998
Q ss_pred EeCCCcEEEEeCCCC----eE----------EEEEcccCCCeEEEEEcCCCCCEEEEEEC-CCcEEEEecCCCCCccceE
Q 013827 219 ASADKQVKIWDVAAG----KC----------NLTLEHHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSGFKW 283 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~----~~----------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~ 283 (436)
|+..| |.+|..... +. +..-.+| .+|++|+|.++| ..+++++. |..|.+||..++..+....
T Consensus 159 gCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~~ 235 (445)
T KOG2139|consen 159 GCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLIP 235 (445)
T ss_pred eecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCcccccc
Confidence 88854 999986421 11 1122344 689999999999 77777775 5689999999998887666
Q ss_pred eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcE
Q 013827 284 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 363 (436)
Q Consensus 284 ~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i 363 (436)
...+.+.-+.|+|++ ..+++++-|+..++|..... ..... .....+.|....|+|+|..+|++.+..-.+
T Consensus 236 ~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~--------wt~er-w~lgsgrvqtacWspcGsfLLf~~sgsp~l 305 (445)
T KOG2139|consen 236 KGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQS--------WTKER-WILGSGRVQTACWSPCGSFLLFACSGSPRL 305 (445)
T ss_pred cCCCceeeEEEcCCC-CEEEEecccceeeeehhccc--------ceecc-eeccCCceeeeeecCCCCEEEEEEcCCceE
Confidence 667889999999998 57888889999999955433 11111 222345899999999996666666655444
Q ss_pred EEEECCCCCc-----------eeEEeeC-----C----CCCcEEEEEEcCCCCcEEEEEeCCC--------cEEEEeCCC
Q 013827 364 KLWDLSNNQP-----------SCIASRN-----P----KAGAVFSVAFSEDSPFVLAIGGSKG--------KLEIWDTLS 415 (436)
Q Consensus 364 ~iwd~~~~~~-----------~~~~~~~-----~----~~~~v~~~~~~~~~~~~l~s~~~dg--------~i~iwd~~~ 415 (436)
+--....... ..+..+. . -.+.+.+++|.|.|.| ||+.-..+ .|.+||...
T Consensus 306 ysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGey-Lav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 306 YSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEY-LAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred EEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCE-EEEEEcCCchhhhhhhhhhhhcccc
Confidence 3322221110 0011110 1 1457889999999997 55543332 356777765
Q ss_pred Ccccccc
Q 013827 416 DAGISNR 422 (436)
Q Consensus 416 ~~~~~~~ 422 (436)
.-.+.-.
T Consensus 385 sp~vels 391 (445)
T KOG2139|consen 385 SPPVELS 391 (445)
T ss_pred cCceEEE
Confidence 5444433
No 214
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=6.8e-14 Score=130.84 Aligned_cols=238 Identities=16% Similarity=0.055 Sum_probs=146.3
Q ss_pred eeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeC---CCcEEEEeCCCCCCCcceeeeccc
Q 013827 99 HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM---EPAIEIWDLDVIDEVQPHVILGGI 175 (436)
Q Consensus 99 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i~vw~~~~~~~~~~~~~~~~~ 175 (436)
..+||+++........+.. +. .......| ||||+.||..+. +..|.+|++.+++...
T Consensus 178 ~~~l~~~d~dg~~~~~lt~-~~----~~~~~p~w-------SPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-------- 237 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHR-SP----QPLMSPAW-------SPDGSKLAYVTFESGRSALVIQTLANGAVRQ-------- 237 (429)
T ss_pred ceeEEEEcCCCCCCEEeec-CC----CceeeeEE-------cCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------
Confidence 4578888776542222221 11 12234445 999999987642 4579999987643211
Q ss_pred chhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCC--cEEEEeCCCCeEEEEEcccCCCeEEEEEcC
Q 013827 176 DEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNH 253 (436)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 253 (436)
+......+..++|+|+|..++++.+.+| .|.+||+++++.. .+..+...+....|+|
T Consensus 238 --------------------l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSP 296 (429)
T PRK03629 238 --------------------VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFP 296 (429)
T ss_pred --------------------ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECC
Confidence 0112223456899999865555555555 4889999887654 4444455678899999
Q ss_pred CCCCEEEEEEC-CCcEEEE--ecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCC--CcEEEEeCCCCCCCCCCCCC
Q 013827 254 HSPQILLSGSF-DRSVVMK--DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED--GTIKGFDIRTAKSDPDSTSQ 328 (436)
Q Consensus 254 ~~~~~l~s~~~-d~~i~~w--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d--g~i~i~d~~~~~~~~~~~~~ 328 (436)
+| +.|+..+. ++...+| |+.++.... ............|+|+|..+++++..+ ..|.+||+.++.
T Consensus 297 DG-~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-------- 366 (429)
T PRK03629 297 DS-QNLAYTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-------- 366 (429)
T ss_pred CC-CEEEEEeCCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC--------
Confidence 99 65655554 4555555 555443322 222334456789999986555555444 357888987662
Q ss_pred cccEEEeccCCCeEEEEecCCCCCEEEEEeCCCc---EEEEECCCCCceeEEeeCCCCCcEEEEEEcCC
Q 013827 329 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM---VKLWDLSNNQPSCIASRNPKAGAVFSVAFSED 394 (436)
Q Consensus 329 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 394 (436)
...+.. ........|+||| ..|+.++.++. +.++++.... ...+..|.+.+...+|+|-
T Consensus 367 --~~~Lt~-~~~~~~p~~SpDG-~~i~~~s~~~~~~~l~~~~~~G~~---~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 367 --VQVLTD-TFLDETPSIAPNG-TMVIYSSSQGMGSVLNLVSTDGRF---KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred --eEEeCC-CCCCCCceECCCC-CEEEEEEcCCCceEEEEEECCCCC---eEECccCCCCcCCcccCCC
Confidence 122221 1223467899999 77877777654 6777886554 3445567778888999873
No 215
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.67 E-value=6.6e-16 Score=136.62 Aligned_cols=226 Identities=14% Similarity=0.160 Sum_probs=161.8
Q ss_pred ccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCC
Q 013827 82 NPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLD 161 (436)
Q Consensus 82 sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~ 161 (436)
.|.+--|++|-..+ ++..++....+...++.........-++|+.|++ -+...++++-.+|.++++|..
T Consensus 182 ~~~g~dllIGf~tG-----qvq~idp~~~~~sklfne~r~i~ktsvT~ikWvp------g~~~~Fl~a~~sGnlyly~~~ 250 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTG-----QVQLIDPINFEVSKLFNEERLINKSSVTCIKWVP------GSDSLFLVAHASGNLYLYDKE 250 (636)
T ss_pred CCCCcceEEeeccC-----ceEEecchhhHHHHhhhhcccccccceEEEEEEe------CCCceEEEEEecCceEEeecc
Confidence 46677777776666 6666665554444556655556667789999974 356677778889999999874
Q ss_pred CCCCCcce-eeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEc
Q 013827 162 VIDEVQPH-VILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE 240 (436)
Q Consensus 162 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 240 (436)
-....... ...-.......+...+......++..+.--.+.|+.++|+||| .+||+.+.||.+||+|..+.+.+..++
T Consensus 251 ~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~eLlg~mk 329 (636)
T KOG2394|consen 251 IVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQELLGVMK 329 (636)
T ss_pred ccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEEEeeccHHHHHHHHH
Confidence 32211110 0000000111111122222224444444455689999999997 599999999999999999988877777
Q ss_pred ccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCC-----------------------
Q 013827 241 HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH----------------------- 297 (436)
Q Consensus 241 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~----------------------- 297 (436)
..-+...|++|+||| ++|++|++|.-|.||.+...+.+..-.+|++.|..|+|+|-
T Consensus 330 SYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~ 408 (636)
T KOG2394|consen 330 SYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHD 408 (636)
T ss_pred hhccceEEEEEcCCc-cEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcc
Confidence 677889999999999 99999999999999999999888877889999999999841
Q ss_pred ------------------------CCcEEEEEeCCCcEEEEeCCCCC
Q 013827 298 ------------------------AEHSFVVSLEDGTIKGFDIRTAK 320 (436)
Q Consensus 298 ------------------------~~~~~~~~~~dg~i~i~d~~~~~ 320 (436)
-.+.|.+.+.|-.+.+||+....
T Consensus 409 ~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 409 FEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred cccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence 01457778889999999997653
No 216
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.66 E-value=2.4e-14 Score=138.46 Aligned_cols=248 Identities=16% Similarity=0.219 Sum_probs=165.7
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
++++.+|++|+.||+|++|+........ ...+...++..-...+.++...+.+ +.+|.+
T Consensus 1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~--------------------~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av~ 1116 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEG--------------------GSARSELTYSPEGSRVEKVTMCGNG-DQFAVS 1116 (1431)
T ss_pred CCCCceEEEecCCceEEEeeehhhhcCc--------------------ceeeeeEEEeccCCceEEEEeccCC-CeEEEE
Confidence 5667999999999999999987433221 1122222333356788899998886 589999
Q ss_pred eCCCcEEEEeCCCC--e-----EEEEEccc-CCCeEEE-EEcCCCCC-EEEEEECCCcEEEEecCCCCCccce--EeeeC
Q 013827 220 SADKQVKIWDVAAG--K-----CNLTLEHH-TDKVQAV-AWNHHSPQ-ILLSGSFDRSVVMKDARISTHSGFK--WAVAA 287 (436)
Q Consensus 220 ~~dg~v~vwd~~~~--~-----~~~~~~~~-~~~v~~~-~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~--~~~~~ 287 (436)
+.||.|++.+++.. + ..+....+ .+.+.+| +|...... .++.+...+.|..||++........ ....+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 99999999998762 1 11222212 2334333 44443334 7888999999999999976654322 23457
Q ss_pred CeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE-eccCCCeEEEEecCCCC--CEEEEEe--CCCc
Q 013827 288 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVP--NLLATGS--TDKM 362 (436)
Q Consensus 288 ~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~--~~l~~~~--~d~~ 362 (436)
.|++++.+|.+ ++++.|+..|.+.+||+|-. .++... ..+..++..+..+|..+ ...++++ ..+.
T Consensus 1197 ~vTSi~idp~~-~WlviGts~G~l~lWDLRF~---------~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne 1266 (1431)
T KOG1240|consen 1197 LVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFR---------VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE 1266 (1431)
T ss_pred ceeEEEecCCc-eEEEEecCCceEEEEEeecC---------ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc
Confidence 79999999977 69999999999999999976 333333 23457788888887553 4555444 4678
Q ss_pred EEEEECCCCCceeEEeeC-----------------CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccc
Q 013827 363 VKLWDLSNNQPSCIASRN-----------------PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 419 (436)
Q Consensus 363 i~iwd~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (436)
|.+|++.++....+.... .+.-.....++..-+. ++.+|+.|..|+.||....+..
T Consensus 1267 vs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~-~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1267 VSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG-FLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc-eeeecCCccceeeccCCCcccc
Confidence 999999887543332222 0111122223333334 6899999999999999876655
No 217
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.66 E-value=4.8e-16 Score=135.13 Aligned_cols=285 Identities=16% Similarity=0.126 Sum_probs=205.1
Q ss_pred cccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcE
Q 013827 76 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI 155 (436)
Q Consensus 76 v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 155 (436)
.+.+.++.+|+.|+.|+..+ .+..++..+. .+.. +..+-.-+..+.|+ .+.+++|++- ...+
T Consensus 132 PY~~~ytrnGrhlllgGrKG-----HlAa~Dw~t~---~L~~--Ei~v~Etv~Dv~~L-------Hneq~~AVAQ-K~y~ 193 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKG-----HLAAFDWVTK---KLHF--EINVMETVRDVTFL-------HNEQFFAVAQ-KKYV 193 (545)
T ss_pred CeeeeecCCccEEEecCCcc-----ceeeeecccc---eeee--eeehhhhhhhhhhh-------cchHHHHhhh-hceE
Confidence 56788899999999998776 5555555443 2222 11222223345553 4677787775 6789
Q ss_pred EEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeE
Q 013827 156 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC 235 (436)
Q Consensus 156 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~ 235 (436)
+|||-...+ .+.+.. ...|..+.|.|.. .+|++++..|.++--|+.+|+.
T Consensus 194 yvYD~~GtE----------------------------lHClk~-~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~Gkl 243 (545)
T KOG1272|consen 194 YVYDNNGTE----------------------------LHCLKR-HIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKL 243 (545)
T ss_pred EEecCCCcE----------------------------Eeehhh-cCchhhhcccchh-heeeecccCCceEEEeechhhh
Confidence 999965322 111222 3578999999984 6899999999999999999999
Q ss_pred EEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEe
Q 013827 236 NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD 315 (436)
Q Consensus 236 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d 315 (436)
+..+..-.+.+..|+-+|-+ ..+-+|...|+|.+|......+......|.++|.++++.++| +++++.+.|..++|||
T Consensus 244 Va~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWD 321 (545)
T KOG1272|consen 244 VASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWD 321 (545)
T ss_pred hHHHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCC-cEEeecccccceeEee
Confidence 99998778899999999988 789999999999999999999988899999999999999987 7999999999999999
Q ss_pred CCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC-CCC--ceeEEeeCCCCCcEEEEEEc
Q 013827 316 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS-NNQ--PSCIASRNPKAGAVFSVAFS 392 (436)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~-~~~--~~~~~~~~~~~~~v~~~~~~ 392 (436)
++.. ..+.++.. ..+...+++|..| +++.+....|.+|.-. .+. ....+......++|..+.|.
T Consensus 322 lR~~---------~ql~t~~t-p~~a~~ls~Sqkg---lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~Fc 388 (545)
T KOG1272|consen 322 LRNF---------YQLHTYRT-PHPASNLSLSQKG---LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFC 388 (545)
T ss_pred eccc---------cccceeec-CCCcccccccccc---ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceec
Confidence 9987 23344433 4566788888744 4455556689999432 211 11111111224589999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCcccccccc
Q 013827 393 EDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 424 (436)
Q Consensus 393 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (436)
|-.. +|..|...|.-.|.=.-.|+.-...+.
T Consensus 389 P~ED-vLGIGH~~G~tsilVPGsGePN~Ds~e 419 (545)
T KOG1272|consen 389 PYED-VLGIGHAGGITSILVPGSGEPNYDSLE 419 (545)
T ss_pred cHHH-eeeccccCCceeEeccCCCCCCcchhc
Confidence 9877 677777777655555555555444333
No 218
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.66 E-value=4.5e-13 Score=121.62 Aligned_cols=253 Identities=13% Similarity=0.099 Sum_probs=161.4
Q ss_pred CCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 139 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 139 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
|+|||+++.+++.||.|.++|+.+.+.+..+. -.....+++++++|+.++++
T Consensus 44 ~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~----------------------------~G~~~~~i~~s~DG~~~~v~ 95 (369)
T PF02239_consen 44 FSPDGRYLYVANRDGTVSVIDLATGKVVATIK----------------------------VGGNPRGIAVSPDGKYVYVA 95 (369)
T ss_dssp -TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-----------------------------SSEEEEEEE--TTTEEEEE
T ss_pred ecCCCCEEEEEcCCCeEEEEECCcccEEEEEe----------------------------cCCCcceEEEcCCCCEEEEE
Confidence 38999999999999999999999877655432 23446789999998745555
Q ss_pred EeCCCcEEEEeCCCCeEEEEEccc-------CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc-ceEeeeCCee
Q 013827 219 ASADKQVKIWDVAAGKCNLTLEHH-------TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVE 290 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~i~ 290 (436)
...++.+.++|.++.+.++.+... ...+..+..+|..+.++++--..+.|.+.|....+... ..........
T Consensus 96 n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~ 175 (369)
T PF02239_consen 96 NYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPH 175 (369)
T ss_dssp EEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEE
T ss_pred ecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccccc
Confidence 567899999999999988887532 34677888888883444454555888888877664432 2334566788
Q ss_pred EEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCC----------------------------------------------C
Q 013827 291 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP----------------------------------------------D 324 (436)
Q Consensus 291 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~----------------------------------------------~ 324 (436)
...|+|++.+++++...+..|.++|..+.+... .
T Consensus 176 D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d 255 (369)
T PF02239_consen 176 DGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHD 255 (369)
T ss_dssp EEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-ST
T ss_pred ccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccch
Confidence 899999986666666777788888877653210 0
Q ss_pred CCCCcccEEEeccCCCeEEEEecCCCCCEEEEE----eCCCcEEEEECCCCCceeEEeeCC-CCCcEEEEEEcCCCCcEE
Q 013827 325 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATG----STDKMVKLWDLSNNQPSCIASRNP-KAGAVFSVAFSEDSPFVL 399 (436)
Q Consensus 325 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l 399 (436)
....+.+.++.....+ .-+.-+|++ .++.+. ...++|.++|.++.+ ....+.. ....+..+.|+++|+++.
T Consensus 256 ~~~wkvv~~I~~~G~g-lFi~thP~s-~~vwvd~~~~~~~~~v~viD~~tl~--~~~~i~~~~~~~~~h~ef~~dG~~v~ 331 (369)
T PF02239_consen 256 DYAWKVVKTIPTQGGG-LFIKTHPDS-RYVWVDTFLNPDADTVQVIDKKTLK--VVKTITPGPGKRVVHMEFNPDGKEVW 331 (369)
T ss_dssp TTBTSEEEEEE-SSSS---EE--TT--SEEEEE-TT-SSHT-EEEEECCGTE--EEE-HHHHHT--EEEEEE-TTSSEEE
T ss_pred hhcCeEEEEEECCCCc-ceeecCCCC-ccEEeeccCCCCCceEEEEECcCcc--eeEEEeccCCCcEeccEECCCCCEEE
Confidence 1122333444444444 567789998 677766 446889999999885 3333332 122488999999999877
Q ss_pred EEEeCCC-cEEEEeCCCCccccccc
Q 013827 400 AIGGSKG-KLEIWDTLSDAGISNRF 423 (436)
Q Consensus 400 ~s~~~dg-~i~iwd~~~~~~~~~~~ 423 (436)
++.-..+ .|.+||..+.+.+.+..
T Consensus 332 vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 332 VSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEEecCCCEEEEEECCCcEEEEEEE
Confidence 7766655 89999999999887654
No 219
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=7.8e-15 Score=128.44 Aligned_cols=259 Identities=19% Similarity=0.231 Sum_probs=188.6
Q ss_pred CCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCC-CCc
Q 013827 136 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRN 214 (436)
Q Consensus 136 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~ 214 (436)
.+.|+..|..|++|+.|..|.+||+......... ..+|...|....|-|. +..
T Consensus 147 tV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f--------------------------~SGH~~NvfQaKFiP~s~d~ 200 (559)
T KOG1334|consen 147 TVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF--------------------------ESGHCNNVFQAKFIPFSGDR 200 (559)
T ss_pred eeeecccCceeeccCccceEEeehhhccCccccc--------------------------ccccccchhhhhccCCCCCc
Confidence 3455889999999999999999999865544332 3489999998888885 234
Q ss_pred EEEEEeCCCcEEEEeCCCCe-E--EEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEe---eeC-
Q 013827 215 ILASASADKQVKIWDVAAGK-C--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---VAA- 287 (436)
Q Consensus 215 ~l~s~~~dg~v~vwd~~~~~-~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~~- 287 (436)
-+++++.||.|++=.+.... + ...+..|.++|..++..|+.+..|.+++.|+.+.-+|++.......... ...
T Consensus 201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~ 280 (559)
T KOG1334|consen 201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE 280 (559)
T ss_pred CceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcc
Confidence 78999999999988765332 2 3455679999999999999999999999999999999998765543332 222
Q ss_pred --CeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE------eccCCCeEEEEecCCCCCEEEEEeC
Q 013827 288 --DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL------HAHDKAVCTISYNPLVPNLLATGST 359 (436)
Q Consensus 288 --~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~p~~~~~l~~~~~ 359 (436)
....++.+|...+.+++|+.|..+++||.+......... .+..+ ......|++++|+.++..+| +.-.
T Consensus 281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~---~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElL-aSYn 356 (559)
T KOG1334|consen 281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNG---VLDKFCPHHLVEDDPVNITGLVYSHDGSELL-ASYN 356 (559)
T ss_pred ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccc---hhhhcCCccccccCcccceeEEecCCcccee-eeec
Confidence 578899999988899999999999999998764332111 11111 12345799999998874444 5556
Q ss_pred CCcEEEEECCCCCc----------eeEE-eeCCCCC--cEEEEEE-cCCCCcEEEEEeCCCcEEEEeCCCCccccccccC
Q 013827 360 DKMVKLWDLSNNQP----------SCIA-SRNPKAG--AVFSVAF-SEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 425 (436)
Q Consensus 360 d~~i~iwd~~~~~~----------~~~~-~~~~~~~--~v~~~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (436)
|-.|+++.-..+.- ..+. .+.+|.. .|..+-| -|...| +++|+.-|.|.||+-.+++.++.+-+.
T Consensus 357 De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy-VvSGSDCGhIFiW~K~t~eii~~MegD 435 (559)
T KOG1334|consen 357 DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY-VVSGSDCGHIFIWDKKTGEIIRFMEGD 435 (559)
T ss_pred ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce-EEecCccceEEEEecchhHHHHHhhcc
Confidence 77799995433211 1111 2456643 4666654 577775 889999999999999999888765443
No 220
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.3e-13 Score=123.28 Aligned_cols=288 Identities=14% Similarity=0.165 Sum_probs=189.9
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
-++.+.-+.|..+|||+++.+.+.... .|.+|+..+- .+..... +.+-+..+.-+ +.|-..++.-
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP----~ikvydlanL---SLKFERh--lDae~V~feiL------sDD~SK~v~L 112 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKP----QIKVYDLANL---SLKFERH--LDAEVVDFEIL------SDDYSKSVFL 112 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCC----ceEEEEcccc---eeeeeec--ccccceeEEEe------ccchhhheEe
Confidence 466777889999999999888766542 6666766553 2222111 11111111111 3444445555
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
..|.+|.+-.-.... .... -...-.+++++.... -|+.++....|+-++
T Consensus 113 ~~DR~IefHak~G~h-------------------------y~~R-----IP~~GRDm~y~~~sc-Dly~~gsg~evYRlN 161 (703)
T KOG2321|consen 113 QNDRTIEFHAKYGRH-------------------------YRTR-----IPKFGRDMKYHKPSC-DLYLVGSGSEVYRLN 161 (703)
T ss_pred ecCceeeehhhcCee-------------------------eeee-----cCcCCccccccCCCc-cEEEeecCcceEEEE
Confidence 667777554321100 0000 011223455544322 244444556799999
Q ss_pred CCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEe------ee-----CCeeEEEeCCCC
Q 013827 230 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA------VA-----ADVESLAWDPHA 298 (436)
Q Consensus 230 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~------~~-----~~i~~~~~~~~~ 298 (436)
++.|+.+..+....+.++++..++-. .+|++|+.+|.|.+||.+.......+.. +. ..|+++.|+.+|
T Consensus 162 LEqGrfL~P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g 240 (703)
T KOG2321|consen 162 LEQGRFLNPFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG 240 (703)
T ss_pred ccccccccccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc
Confidence 99999999998788999999999988 7999999999999999998765543221 22 239999999876
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEe
Q 013827 299 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 378 (436)
Q Consensus 299 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 378 (436)
..+++|+.+|.+.|||+++.+ ..+..-+...-+|..+.|.+.+..--+.......++|||-.++++ ...
T Consensus 241 -L~~aVGts~G~v~iyDLRa~~--------pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~--~as 309 (703)
T KOG2321|consen 241 -LHVAVGTSTGSVLIYDLRASK--------PLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP--MAS 309 (703)
T ss_pred -eeEEeeccCCcEEEEEcccCC--------ceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCc--eee
Confidence 789999999999999999872 223333445578899999886423333334456799999999984 333
Q ss_pred eCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 379 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 379 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
.. ....++.+|+-|++. ++.++-.++.+..|=+..-.
T Consensus 310 iE-pt~~lND~C~~p~sG-m~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 310 IE-PTSDLNDFCFVPGSG-MFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred cc-ccCCcCceeeecCCc-eEEEecCCCcceeEEccccC
Confidence 33 344699999999988 68888888888777765543
No 221
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=2.2e-13 Score=128.01 Aligned_cols=211 Identities=15% Similarity=0.087 Sum_probs=132.3
Q ss_pred CCCCCCCcEEEEeeCC---CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCC
Q 013827 137 LKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR 213 (436)
Q Consensus 137 ~~~s~~~~~l~~g~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 213 (436)
+.|+|||+.|+..+.+ ..|.+||+.+++... +..+.....+.+|+|+|.
T Consensus 209 p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~----------------------------l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 209 PAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL----------------------------VASFRGINGAPSFSPDGR 260 (433)
T ss_pred ccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE----------------------------eccCCCCccCceECCCCC
Confidence 3449999999988743 469999997644211 112333455789999987
Q ss_pred cEEEEEeCCC--cEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEE-CCCc--EEEEecCCCCCccceEeeeCC
Q 013827 214 NILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-FDRS--VVMKDARISTHSGFKWAVAAD 288 (436)
Q Consensus 214 ~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~--i~~wd~~~~~~~~~~~~~~~~ 288 (436)
.++++.+.+| .|.+||+.+++. ..+..+.......+|+|+| ..|+..+ .+|. |.++|+.++.... .......
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~ 337 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNY 337 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCeEE-eecCCCC
Confidence 5666666666 599999988764 4455555556788999999 6555554 4555 5666665544322 2222334
Q ss_pred eeEEEeCCCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCC---CcE
Q 013827 289 VESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD---KMV 363 (436)
Q Consensus 289 i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---~~i 363 (436)
....+|+|+|..++++...++ .|.+||+.++. . ..+. +........|+|++ ++|+..+.+ +.|
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~---------~-~~Lt-~~~~~~~p~~spdG-~~i~~~s~~~g~~~L 405 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS---------V-RTLT-PGSLDESPSFAPNG-SMVLYATREGGRGVL 405 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCCC---------e-EECC-CCCCCCCceECCCC-CEEEEEEecCCceEE
Confidence 557899999865444444333 58999987662 1 1222 22234567899999 666555542 357
Q ss_pred EEEECCCCCceeEEeeCCCCCcEEEEEEcC
Q 013827 364 KLWDLSNNQPSCIASRNPKAGAVFSVAFSE 393 (436)
Q Consensus 364 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 393 (436)
.++++.... ...+..+.+.+...+|+|
T Consensus 406 ~~~~~~g~~---~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 406 AAVSTDGRV---RQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEECCCCc---eEEcccCCCCCCCCccCC
Confidence 777886543 233333445667778876
No 222
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.63 E-value=1.8e-14 Score=116.68 Aligned_cols=159 Identities=23% Similarity=0.287 Sum_probs=125.2
Q ss_pred CcccceeEEEecCCC--CcEEEEEeCCCcEEEEeCCCCeEE----------EEEcccCCCeEEEEEcCCCCCEEEEEECC
Q 013827 198 SHTDSVLGLAWNKEF--RNILASASADKQVKIWDVAAGKCN----------LTLEHHTDKVQAVAWNHHSPQILLSGSFD 265 (436)
Q Consensus 198 ~h~~~v~~~~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 265 (436)
+..+.+.+..+.-+. ..+|+.|-++|.+.+||+.++..+ .....|..+|.++.+.+.- ..=++|+.+
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~ 226 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGAD 226 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCcc
Confidence 345667777753322 236778888999999999987333 3345689999999998755 445778888
Q ss_pred CcEEEEecCCCCCc----cceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCe
Q 013827 266 RSVVMKDARISTHS----GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 341 (436)
Q Consensus 266 ~~i~~wd~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 341 (436)
..+..|.+...... .........+..+.+-||+ +++++++.|+.||+|..++. .++..+.-|...|
T Consensus 227 dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVyswrtl---------~pLAVLkyHsagv 296 (323)
T KOG0322|consen 227 DKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRTL---------NPLAVLKYHSAGV 296 (323)
T ss_pred ccceeeeeccccCcccccceEEecCCCccceEEccCC-cEEeecccCCcEEEEEeccC---------Cchhhhhhhhcce
Confidence 88999988754221 1122234568889999987 69999999999999999998 7788999999999
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEEC
Q 013827 342 CTISYNPLVPNLLATGSTDKMVKLWDL 368 (436)
Q Consensus 342 ~~~~~~p~~~~~l~~~~~d~~i~iwd~ 368 (436)
++++|+|+. .++|+++.|++|.+|++
T Consensus 297 n~vAfspd~-~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 297 NAVAFSPDC-ELMAAASKDARISLWKL 322 (323)
T ss_pred eEEEeCCCC-chhhhccCCceEEeeec
Confidence 999999997 89999999999999986
No 223
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.62 E-value=9.6e-14 Score=114.48 Aligned_cols=156 Identities=14% Similarity=0.258 Sum_probs=106.1
Q ss_pred EEEEEcCCCCCEEEEEEC---------CCcEEEEecCCCCCccceE--eeeCCeeEEEeCCCCCcEEEE-EeCCCcEEEE
Q 013827 247 QAVAWNHHSPQILLSGSF---------DRSVVMKDARISTHSGFKW--AVAADVESLAWDPHAEHSFVV-SLEDGTIKGF 314 (436)
Q Consensus 247 ~~~~~~~~~~~~l~s~~~---------d~~i~~wd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~-~~~dg~i~i~ 314 (436)
..+.|++.|..+++.... -+...+|.++......... ...++|.+++|+|++..++++ |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 467899999554444441 2345666665443333233 345579999999998655444 4467899999
Q ss_pred eCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeC---CCcEEEEECCCCCceeEEeeCCCCCcEEEEEE
Q 013827 315 DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST---DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 391 (436)
Q Consensus 315 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 391 (436)
|++. ..+..+ +...++.+.|+|+| ++|++++. .|.|.+||+++.+ .+.... |. .++.++|
T Consensus 89 d~~~----------~~i~~~--~~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~--~i~~~~-~~-~~t~~~W 151 (194)
T PF08662_consen 89 DVKG----------KKIFSF--GTQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKK--KISTFE-HS-DATDVEW 151 (194)
T ss_pred cCcc----------cEeEee--cCCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCE--Eeeccc-cC-cEEEEEE
Confidence 9973 334444 35678899999999 88888765 4679999999766 333332 33 4789999
Q ss_pred cCCCCcEEEEEeC-----CCcEEEEeCCCCcccc
Q 013827 392 SEDSPFVLAIGGS-----KGKLEIWDTLSDAGIS 420 (436)
Q Consensus 392 ~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~ 420 (436)
+|+|++++.+.+. |+.++||+.. |+.+.
T Consensus 152 sPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 152 SPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred cCCCCEEEEEEeccceeccccEEEEEec-CeEeE
Confidence 9999974444443 7889999985 44443
No 224
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.61 E-value=2.2e-13 Score=114.43 Aligned_cols=306 Identities=14% Similarity=0.192 Sum_probs=183.3
Q ss_pred ccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCC-----CceeeecccccCc--------CcceeecccCCCCC
Q 013827 73 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD-----PNLYVHHHIIIPA--------FPLCMAWLDCPLKD 139 (436)
Q Consensus 73 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 139 (436)
.+-|.++.|..+|.+||+|...| +|.+|+...... ...+..|+..... -..-+.|++
T Consensus 25 adiis~vef~~~Ge~LatGdkgG-----RVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~----- 94 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGG-----RVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD----- 94 (433)
T ss_pred hcceeeEEeecccceEeecCCCC-----eEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecC-----
Confidence 45689999999999999998776 777776544321 1122333222221 123456643
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
..+...++..+.|.+|++|.+....... ........+....|+++..- +.+
T Consensus 95 ~~n~a~FLlstNdktiKlWKi~er~~k~----------------------~~~~~~~~~~~~~~~~lr~p-------~~~ 145 (433)
T KOG1354|consen 95 DGNLAEFLLSTNDKTIKLWKIRERGSKK----------------------EGYNLPEEGPPGTITSLRLP-------VEG 145 (433)
T ss_pred CCCccEEEEecCCcceeeeeeecccccc----------------------ccccccccCCCCccceeece-------eec
Confidence 2345667778889999999986422211 00011111122233333221 111
Q ss_pred eCCCcEEEEeCCCCeEEEEE-cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE--------eeeCCee
Q 013827 220 SADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--------AVAADVE 290 (436)
Q Consensus 220 ~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--------~~~~~i~ 290 (436)
..|-.+. ..+.+.+ ..|...|.++.++.|. ..++++ .|=.|.+|++.-....-... ....-|+
T Consensus 146 ~~~~~ve------a~prRv~aNaHtyhiNSIS~NsD~-Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVIT 217 (433)
T KOG1354|consen 146 RHDLEVE------ASPRRVYANAHTYHINSISVNSDK-ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVIT 217 (433)
T ss_pred cccceee------eeeeeeccccceeEeeeeeecCcc-ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHh
Confidence 1111110 1223333 4688899999999998 555554 57889999987544322111 1234588
Q ss_pred EEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCC-------CCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcE
Q 013827 291 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD-------STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 363 (436)
Q Consensus 291 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i 363 (436)
+..|+|..-+.++.++..|+|++-|+|....... ........-+..--..|..+.|+++| +++++-+. -+|
T Consensus 218 saEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRDy-ltv 295 (433)
T KOG1354|consen 218 SAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRDY-LTV 295 (433)
T ss_pred hhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEecc-cee
Confidence 9999998888999999999999999995421100 00001111122233568899999998 88887543 589
Q ss_pred EEEECCCCCceeEEeeCCCC------------Cc---EEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccCCCC
Q 013827 364 KLWDLSNNQPSCIASRNPKA------------GA---VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 428 (436)
Q Consensus 364 ~iwd~~~~~~~~~~~~~~~~------------~~---v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 428 (436)
++||+..... .+.+.+-|. .. -..++|+.++.+ ++||+....+++|++..|......+.....
T Consensus 296 k~wD~nme~~-pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~-v~TGsy~n~frvf~~~~gsk~d~tl~asr~ 373 (433)
T KOG1354|consen 296 KLWDLNMEAK-PVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSY-VMTGSYNNVFRVFNLARGSKEDFTLEASRK 373 (433)
T ss_pred EEEeccccCC-cceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcce-EecccccceEEEecCCCCcceeeccccccc
Confidence 9999954321 233333332 12 246899999985 899999999999998777655444444433
Q ss_pred C
Q 013827 429 P 429 (436)
Q Consensus 429 ~ 429 (436)
+
T Consensus 374 ~ 374 (433)
T KOG1354|consen 374 N 374 (433)
T ss_pred C
Confidence 3
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.61 E-value=4.2e-15 Score=123.97 Aligned_cols=233 Identities=17% Similarity=0.228 Sum_probs=164.0
Q ss_pred CCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEE
Q 013827 138 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 217 (436)
Q Consensus 138 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 217 (436)
.|||+|+++|+++.- .+.|=|..+.+..+-. .--+.|.-+.|.-+....|.
T Consensus 15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----------------------------~cldki~yieW~ads~~ilC 65 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----------------------------LCLDKIVYIEWKADSCHILC 65 (447)
T ss_pred eECCCCCeeeeeeee-EEEEeccchhhHHHHH----------------------------HHHHHhhheeeeccceeeee
Confidence 459999999999865 7778787765443321 12456888899988666677
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCC
Q 013827 218 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 297 (436)
Q Consensus 218 s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~ 297 (436)
....|+.|.+|++...+-...+.....++.+++|+|+|..+|.+...+-.|.+|.+.+.+... ..-.+..+..++|+|+
T Consensus 66 ~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~d 144 (447)
T KOG4497|consen 66 VAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPD 144 (447)
T ss_pred eeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCC
Confidence 778899999999999888888988889999999999998888889999999999999877654 2223455689999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEE
Q 013827 298 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 377 (436)
Q Consensus 298 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 377 (436)
| ++.+..+.-.....+.+...+ ....+..+...+-..+.+.|+||| ..|| +||---.- .+.
T Consensus 145 g-~f~ai~sRrDCkdyv~i~~c~------~W~ll~~f~~dT~DltgieWsPdg-~~la---------Vwd~~Ley--kv~ 205 (447)
T KOG4497|consen 145 G-QFCAILSRRDCKDYVQISSCK------AWILLKEFKLDTIDLTGIEWSPDG-NWLA---------VWDNVLEY--KVY 205 (447)
T ss_pred C-ceeeeeecccHHHHHHHHhhH------HHHHHHhcCCCcccccCceECCCC-cEEE---------Eecchhhh--eee
Confidence 8 455555432211111221110 123444555556677899999998 6665 45433221 111
Q ss_pred eeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 378 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 378 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
..+ ..-.+..++|+|.++ +|+.|+.|+.++|-+--+.+...+
T Consensus 206 aYe-~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~e 247 (447)
T KOG4497|consen 206 AYE-RGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGE 247 (447)
T ss_pred eee-eccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhh
Confidence 111 123588899999999 599999999999987766665543
No 226
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=5.8e-12 Score=105.03 Aligned_cols=278 Identities=14% Similarity=0.194 Sum_probs=174.1
Q ss_pred ccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEE-EeeCC-
Q 013827 75 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA-VGSME- 152 (436)
Q Consensus 75 ~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~g~~d- 152 (436)
...+++|+.|..-+++|...| ++|+..+.-...... ..+..... ..-+-+ ..++|| +||.+
T Consensus 7 ~~lsvs~NQD~ScFava~~~G----friyn~~P~ke~~~r--~~~~~G~~--~veMLf---------R~N~laLVGGg~~ 69 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG----FRIYNCDPFKESASR--QFIDGGFK--IVEMLF---------RSNYLALVGGGSR 69 (346)
T ss_pred ceeEEEEccCCceEEEEecCc----eEEEecCchhhhhhh--ccccCchh--hhhHhh---------hhceEEEecCCCC
Confidence 345599999999999998775 566655542221000 11110000 000111 234454 44433
Q ss_pred -----CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEE
Q 013827 153 -----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 227 (436)
Q Consensus 153 -----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~v 227 (436)
..|.|||=....++.. + ....+|.++.+.++ .|++.- .+.|.|
T Consensus 70 pky~pNkviIWDD~k~~~i~e---------------------------l-~f~~~I~~V~l~r~---riVvvl-~~~I~V 117 (346)
T KOG2111|consen 70 PKYPPNKVIIWDDLKERCIIE---------------------------L-SFNSEIKAVKLRRD---RIVVVL-ENKIYV 117 (346)
T ss_pred CCCCCceEEEEecccCcEEEE---------------------------E-EeccceeeEEEcCC---eEEEEe-cCeEEE
Confidence 5799999332222211 1 35678999999987 455554 468999
Q ss_pred EeCC-CCeEEEEEcccCCCeEEEEEcCCCCC-EEE-EEECCCcEEEEecCCCCC--ccceEeeeCCeeEEEeCCCCCcEE
Q 013827 228 WDVA-AGKCNLTLEHHTDKVQAVAWNHHSPQ-ILL-SGSFDRSVVMKDARISTH--SGFKWAVAADVESLAWDPHAEHSF 302 (436)
Q Consensus 228 wd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~-s~~~d~~i~~wd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~ 302 (436)
|... ..+.++.+..-..+=--++..|.... +|+ -|-.-|.|++-|+..... +.....|.+.|.+++.+.+| .++
T Consensus 118 ytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-t~v 196 (346)
T KOG2111|consen 118 YTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-TLV 196 (346)
T ss_pred EEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-cEE
Confidence 9987 44555555322212112334443322 333 345679999999987665 46677899999999999988 699
Q ss_pred EEEeCCCc-EEEEeCCCCCCCCCCCCCcccEEEec--cCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCce-----
Q 013827 303 VVSLEDGT-IKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS----- 374 (436)
Q Consensus 303 ~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~----- 374 (436)
|+++..|+ |||||..++ ..+.++.. ....|.+++|+|+. .+||++|+.|++.||.++.....
T Consensus 197 ATaStkGTLIRIFdt~~g---------~~l~E~RRG~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~~~~~~~~~S 266 (346)
T KOG2111|consen 197 ATASTKGTLIRIFDTEDG---------TLLQELRRGVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRDTENTEDESS 266 (346)
T ss_pred EEeccCcEEEEEEEcCCC---------cEeeeeecCCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeecCCCCccccc
Confidence 99999997 799999998 45555543 34679999999998 89999999999999988763210
Q ss_pred -----------------eEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 013827 375 -----------------CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 375 -----------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 413 (436)
....+.-..++..-++|..+... ++..+.||..+-+.+
T Consensus 267 Sl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~ns-vi~i~~Dgsy~k~~f 321 (346)
T KOG2111|consen 267 SLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNT-VIAICADGSYYKFKF 321 (346)
T ss_pred cccccccccchhcccceeEEEEEccCCCcEEEEecCCCCe-EEEEEeCCcEEEEEe
Confidence 01111222345566777776443 444667787654443
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=1e-12 Score=123.00 Aligned_cols=204 Identities=11% Similarity=0.104 Sum_probs=128.6
Q ss_pred CcccceeEEEecCCCCcEEEEEe---CCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCC--cEEEEe
Q 013827 198 SHTDSVLGLAWNKEFRNILASAS---ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD 272 (436)
Q Consensus 198 ~h~~~v~~~~~~~~~~~~l~s~~---~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd 272 (436)
.+...+...+|+|+|. .|+..+ .+..+.+|++.+++... +......+....|+|+|..++++.+.+| .|.+||
T Consensus 196 ~~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d 273 (429)
T PRK03629 196 RSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD 273 (429)
T ss_pred cCCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEE
Confidence 3566899999999985 555433 23479999998876433 2223334557899999944444445555 488899
Q ss_pred cCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEE--eCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC
Q 013827 273 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF--DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 350 (436)
Q Consensus 273 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 350 (436)
+.++.... .......+....|+|++..++++...++...+| |+..+ . ...+...........|+|+|
T Consensus 274 ~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g---------~-~~~lt~~~~~~~~~~~SpDG 342 (429)
T PRK03629 274 LASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG---------A-PQRITWEGSQNQDADVSSDG 342 (429)
T ss_pred CCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC---------C-eEEeecCCCCccCEEECCCC
Confidence 98765433 223345678899999986555565555655555 55443 1 22333344455678999999
Q ss_pred CCEEEEEeC-C--CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCc---EEEEeCCCCccccc
Q 013827 351 PNLLATGST-D--KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK---LEIWDTLSDAGISN 421 (436)
Q Consensus 351 ~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~---i~iwd~~~~~~~~~ 421 (436)
.+|+..+. + ..|.+||+.+++...+. ... ......|+|||++ |+.++.++. +.++++. +....+
T Consensus 343 -~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt--~~~--~~~~p~~SpDG~~-i~~~s~~~~~~~l~~~~~~-G~~~~~ 412 (429)
T PRK03629 343 -KFMVMVSSNGGQQHIAKQDLATGGVQVLT--DTF--LDETPSIAPNGTM-VIYSSSQGMGSVLNLVSTD-GRFKAR 412 (429)
T ss_pred -CEEEEEEccCCCceEEEEECCCCCeEEeC--CCC--CCCCceECCCCCE-EEEEEcCCCceEEEEEECC-CCCeEE
Confidence 66665544 3 35888999887643322 111 2346789999996 555665554 6677774 333333
No 228
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.61 E-value=1.3e-13 Score=133.43 Aligned_cols=227 Identities=19% Similarity=0.255 Sum_probs=164.8
Q ss_pred cccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC-------eEEEEEcccCCCeEEEEEcCCCCCEEEE
Q 013827 189 KSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLS 261 (436)
Q Consensus 189 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s 261 (436)
+..++..+..|...|..++.++....+++||+.||+|++||...- +...++..-...+.++...+.+ ..+|.
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av 1115 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFAV 1115 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEEE
Confidence 456667777899999999999886579999999999999998642 2233344356788999999988 88999
Q ss_pred EECCCcEEEEecCCCCCccce--------EeeeCCeeEE-EeCCCCC-cEEEEEeCCCcEEEEeCCCCCCCCCCCCCccc
Q 013827 262 GSFDRSVVMKDARISTHSGFK--------WAVAADVESL-AWDPHAE-HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS 331 (436)
Q Consensus 262 ~~~d~~i~~wd~~~~~~~~~~--------~~~~~~i~~~-~~~~~~~-~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 331 (436)
++.||.|++.++......... ....+.+.++ ++..... ..++.+...+.|..||+++... .-.
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~-------~w~ 1188 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD-------AWR 1188 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh-------HHh
Confidence 999999999998763211100 0112333333 3333322 3788899999999999998621 112
Q ss_pred EEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCC---CcEEEEEe-CCCc
Q 013827 332 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS---PFVLAIGG-SKGK 407 (436)
Q Consensus 332 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~s~~-~dg~ 407 (436)
.......+.|++++.+|.+ .++++|+..|.+.+||++-+.+...+.++.+ .+++.+..+|-. ...+.++. ..+.
T Consensus 1189 lk~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs~~~~~~ne 1266 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVSAGSSSNNE 1266 (1431)
T ss_pred hhcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEEecccCCCc
Confidence 2233445789999999998 8999999999999999999887666666554 688888877643 33344444 5788
Q ss_pred EEEEeCCCCccccccccC
Q 013827 408 LEIWDTLSDAGISNRFSK 425 (436)
Q Consensus 408 i~iwd~~~~~~~~~~~~~ 425 (436)
|.+|++.+|.+-...+..
T Consensus 1267 vs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1267 VSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred eeeeecccCcceEEEEcC
Confidence 999999999777666655
No 229
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=4.3e-13 Score=125.57 Aligned_cols=200 Identities=16% Similarity=0.161 Sum_probs=127.2
Q ss_pred CcccceeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC
Q 013827 198 SHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 274 (436)
Q Consensus 198 ~h~~~v~~~~~~~~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 274 (436)
.+...+.+.+|+|+|+ .|+..+.+ ..|.+||+.+++... +......+....|+|+|..++++.+.++...+|.+.
T Consensus 193 ~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 193 SSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred cCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 4667899999999985 56555432 359999999886543 333445567899999994444567788877776654
Q ss_pred --CCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCC
Q 013827 275 --ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 352 (436)
Q Consensus 275 --~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 352 (436)
.... .....+........|+|+|..+++++..+|...+|.+.... .....+...........|+|+| +
T Consensus 271 ~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~--------g~~~~lt~~g~~~~~~~~SpDG-~ 340 (427)
T PRK02889 271 ADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG--------GAAQRVTFTGSYNTSPRISPDG-K 340 (427)
T ss_pred CCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC--------CceEEEecCCCCcCceEECCCC-C
Confidence 3332 22223344456788999997666666556777777654321 1112222223334568899999 7
Q ss_pred EEEEEeCCC---cEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCc--EEEEeC
Q 013827 353 LLATGSTDK---MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDT 413 (436)
Q Consensus 353 ~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--i~iwd~ 413 (436)
+|+..+.++ .|.+||+.+++...+ ... .......|+|||++++++....|. +.+.++
T Consensus 341 ~Ia~~s~~~g~~~I~v~d~~~g~~~~l---t~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 341 LLAYISRVGGAFKLYVQDLATGQVTAL---TDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred EEEEEEccCCcEEEEEEECCCCCeEEc---cCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 777666544 599999988764322 211 234578999999976665555554 444455
No 230
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.60 E-value=6e-12 Score=114.50 Aligned_cols=273 Identities=16% Similarity=0.186 Sum_probs=168.7
Q ss_pred eEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeC----CCcEEEEeCCCC-CCCcceeeecc
Q 013827 100 LEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM----EPAIEIWDLDVI-DEVQPHVILGG 174 (436)
Q Consensus 100 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~----dg~i~vw~~~~~-~~~~~~~~~~~ 174 (436)
+.++.++...+ .+..........-|..+++ +|++++|.+... +|.|..|.+... ..+....
T Consensus 15 I~~~~~d~~~g---~l~~~~~~~~~~~Ps~l~~-------~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~---- 80 (345)
T PF10282_consen 15 IYVFRFDEETG---TLTLVQTVAEGENPSWLAV-------SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN---- 80 (345)
T ss_dssp EEEEEEETTTT---EEEEEEEEEESSSECCEEE--------TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE----
T ss_pred EEEEEEcCCCC---CceEeeeecCCCCCceEEE-------EeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee----
Confidence 45555555555 3433332223333333444 899999988876 478999988753 1111110
Q ss_pred cchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEe-CCCcEEEEeCCC-CeEEEE---Ec---------
Q 013827 175 IDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-ADKQVKIWDVAA-GKCNLT---LE--------- 240 (436)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~v~vwd~~~-~~~~~~---~~--------- 240 (436)
...........++++|+++ +|+++. .+|.|.++++.. +..... +.
T Consensus 81 --------------------~~~~~g~~p~~i~~~~~g~-~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~ 139 (345)
T PF10282_consen 81 --------------------SVPSGGSSPCHIAVDPDGR-FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPD 139 (345)
T ss_dssp --------------------EEEESSSCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTT
T ss_pred --------------------eeccCCCCcEEEEEecCCC-EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccc
Confidence 0111233456789999975 555554 589999999987 433222 21
Q ss_pred -ccCCCeEEEEEcCCCCCEEEE-EECCCcEEEEecCCCCC-cc----ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEE
Q 013827 241 -HHTDKVQAVAWNHHSPQILLS-GSFDRSVVMKDARISTH-SG----FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 313 (436)
Q Consensus 241 -~~~~~v~~~~~~~~~~~~l~s-~~~d~~i~~wd~~~~~~-~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i 313 (436)
.......++.++|++ +++++ .-....|.+|++..... .. ...........+.|+|++..++++.-.++.|.+
T Consensus 140 rq~~~h~H~v~~~pdg-~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v 218 (345)
T PF10282_consen 140 RQEGPHPHQVVFSPDG-RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSV 218 (345)
T ss_dssp TTSSTCEEEEEE-TTS-SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred ccccccceeEEECCCC-CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEE
Confidence 123567899999999 55554 44456899999977652 21 112345678999999998777777888999999
Q ss_pred EeCCCCCCCCCCCCCcccEEEecc------CCCeEEEEecCCCCCEEEEE-eCCCcEEEEECC--CCCceeEEeeCCCCC
Q 013827 314 FDIRTAKSDPDSTSQQSSFTLHAH------DKAVCTISYNPLVPNLLATG-STDKMVKLWDLS--NNQPSCIASRNPKAG 384 (436)
Q Consensus 314 ~d~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~p~~~~~l~~~-~~d~~i~iwd~~--~~~~~~~~~~~~~~~ 384 (436)
|++..... ....+...... ......++++|++ ++|+++ ...+.|.+|++. ++....+........
T Consensus 219 ~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~i~ispdg-~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~ 292 (345)
T PF10282_consen 219 FDYDPSDG-----SLTEIQTISTLPEGFTGENAPAEIAISPDG-RFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGK 292 (345)
T ss_dssp EEEETTTT-----EEEEEEEEESCETTSCSSSSEEEEEE-TTS-SEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSS
T ss_pred EeecccCC-----ceeEEEEeeeccccccccCCceeEEEecCC-CEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCC
Confidence 99883211 01122222211 1257889999999 665554 457889999994 345444444443344
Q ss_pred cEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 385 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 385 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
..+.++++|+|++++++...++.|.+|++.
T Consensus 293 ~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 293 FPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 589999999999877777788899999874
No 231
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.60 E-value=1.3e-13 Score=113.43 Aligned_cols=251 Identities=16% Similarity=0.151 Sum_probs=168.7
Q ss_pred ccccccceec--c-CCc-eEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCc------CcceeecccCCCCCCCC
Q 013827 73 SEDLEDMTIN--P-NDA-VIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPA------FPLCMAWLDCPLKDREK 142 (436)
Q Consensus 73 ~~~v~~~~~s--p-~~~-~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~s~~ 142 (436)
...+.+|.|. + +|. .++-+...+ .|.+|+....... .|-.++.. ..+++.| ++.
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G-----~i~~~r~~~~~ss----~~L~~ls~~ki~~~~~lslD~-------~~~ 132 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARG-----QIQLYRNDEDESS----VHLRGLSSKKISVVEALSLDI-------STS 132 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccc-----eEEEEeeccceee----eeecccchhhhhheeeeEEEe-------ecc
Confidence 3456677776 2 333 333344343 6666665553211 11111211 2456666 788
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCC
Q 013827 143 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 222 (436)
Q Consensus 143 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 222 (436)
+..++++-.+|.+.+-+..... .......++|.-+++...|+...++++.+|+.|
T Consensus 133 ~~~i~vs~s~G~~~~v~~t~~~-------------------------le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD 187 (339)
T KOG0280|consen 133 GTKIFVSDSRGSISGVYETEMV-------------------------LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDD 187 (339)
T ss_pred CceEEEEcCCCcEEEEecceee-------------------------eeecccccccceeeeeeecccCCCceEEecCCC
Confidence 8889999999999855543211 122224668999999999998888899999999
Q ss_pred CcEEEEeCC-CCeEEEE-EcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCc
Q 013827 223 KQVKIWDVA-AGKCNLT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 300 (436)
Q Consensus 223 g~v~vwd~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 300 (436)
+.+..||++ .++.+.. .+.|...|.++.-+|..+.++++|+.|..|++||.|....+.......+.|..+.++|....
T Consensus 188 ~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~ 267 (339)
T KOG0280|consen 188 GSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFH 267 (339)
T ss_pred ceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhh
Confidence 999999998 3344443 46789999999999877799999999999999999987777766777899999999996544
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeC-CCcEE-EEECC
Q 013827 301 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKMVK-LWDLS 369 (436)
Q Consensus 301 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d~~i~-iwd~~ 369 (436)
.++.+..-.-.++-+........ .......+.|.+-...-.|.... .+|||++. |+.++ +|-.-
T Consensus 268 ~lL~~CMh~G~ki~~~~~~~~e~----~~~~~s~~~hdSl~YG~DWd~~~-~~lATCsFYDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 268 RLLAACMHNGAKILDSSDKVLEF----QIVLPSDKIHDSLCYGGDWDSKD-SFLATCSFYDKKIRQLWLHI 333 (339)
T ss_pred HHHHHHHhcCceEEEecccccch----heeeeccccccceeecccccccc-ceeeeeeccccceeeeeeec
Confidence 44555444556777776653210 11334455666666777775543 57888664 55544 55433
No 232
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=8.1e-13 Score=124.35 Aligned_cols=237 Identities=12% Similarity=0.097 Sum_probs=146.5
Q ss_pred eeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeC---CCcEEEEeCCCCCCCcceeeeccc
Q 013827 99 HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM---EPAIEIWDLDVIDEVQPHVILGGI 175 (436)
Q Consensus 99 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i~vw~~~~~~~~~~~~~~~~~ 175 (436)
..+||+++........+. .+. ....+..| +|||+.|+..+. +..|.+||+.+++...
T Consensus 181 ~~~l~~~d~dg~~~~~lt-~~~----~~v~~p~w-------SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-------- 240 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLT-DGS----SLVLTPRF-------SPNRQEITYMSYANGRPRVYLLDLETGQREL-------- 240 (435)
T ss_pred ceEEEEECCCCCCcEEEe-cCC----CCeEeeEE-------CCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------
Confidence 357888876554222222 221 12234445 999999988764 4689999997654311
Q ss_pred chhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCc--EEEEeCCCCeEEEEEcccCCCeEEEEEcC
Q 013827 176 DEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ--VKIWDVAAGKCNLTLEHHTDKVQAVAWNH 253 (436)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~--v~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 253 (436)
+..+.+.+...+|+|+|..++++.+.++. |.+||+.+++. ..+..+........|+|
T Consensus 241 --------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~sp 299 (435)
T PRK05137 241 --------------------VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSP 299 (435)
T ss_pred --------------------eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcC
Confidence 22355567789999998766667777665 77778887764 45655666677899999
Q ss_pred CCCCEEEEEE-CCC--cEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCC
Q 013827 254 HSPQILLSGS-FDR--SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQ 328 (436)
Q Consensus 254 ~~~~~l~s~~-~d~--~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~ 328 (436)
+| ..++..+ .+| .|.++|+....... ............|+|+|..++++....+ .|.+||+....
T Consensus 300 DG-~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-------- 369 (435)
T PRK05137 300 DG-SQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-------- 369 (435)
T ss_pred CC-CEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc--------
Confidence 99 6555554 344 57777876554332 2223455677889999965555443333 57788875441
Q ss_pred cccEEEeccCCCeEEEEecCCCCCEEEEEeC-C-----CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCC
Q 013827 329 QSSFTLHAHDKAVCTISYNPLVPNLLATGST-D-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED 394 (436)
Q Consensus 329 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 394 (436)
...+. ....+..+.|+|+| +.|+..+. . ..+.++|+...... .+. ..+.+...+|+|-
T Consensus 370 --~~~lt-~~~~~~~p~~spDG-~~i~~~~~~~~~~~~~~L~~~dl~g~~~~---~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 370 --ERILT-SGFLVEGPTWAPNG-RVIMFFRQTPGSGGAPKLYTVDLTGRNER---EVP-TPGDASDPAWSPL 433 (435)
T ss_pred --eEecc-CCCCCCCCeECCCC-CEEEEEEccCCCCCcceEEEEECCCCceE---Ecc-CCCCccCcccCCC
Confidence 11221 22346778999999 66554433 2 25788888766532 222 2334566778763
No 233
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=7.2e-13 Score=124.70 Aligned_cols=203 Identities=13% Similarity=0.088 Sum_probs=134.5
Q ss_pred CcccceeEEEecCCCCcEEEEEeC---CCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCc--EEEEe
Q 013827 198 SHTDSVLGLAWNKEFRNILASASA---DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKD 272 (436)
Q Consensus 198 ~h~~~v~~~~~~~~~~~~l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~--i~~wd 272 (436)
.|...+...+|+|+|. .|+..+. +..|.+||+.+++. ..+..+.+.+...+|+|+|..++++.+.++. |.+||
T Consensus 199 ~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 276 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMD 276 (435)
T ss_pred cCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEE
Confidence 5777899999999985 5655543 46899999988865 3444566677889999999545566676665 77778
Q ss_pred cCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC
Q 013827 273 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 350 (436)
Q Consensus 273 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 350 (436)
+.++.... +..+........|+|++..++++...+| .|.++|+..+ . ...+..+...+....|+|++
T Consensus 277 ~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~---------~-~~~lt~~~~~~~~~~~SpdG 345 (435)
T PRK05137 277 LRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS---------N-PRRISFGGGRYSTPVWSPRG 345 (435)
T ss_pred CCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC---------C-eEEeecCCCcccCeEECCCC
Confidence 87665433 3334445677899999865555554544 5777787654 1 23333345556778999999
Q ss_pred CCEEEEEeCC---CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCC-----CcEEEEeCCCCcc
Q 013827 351 PNLLATGSTD---KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDAG 418 (436)
Q Consensus 351 ~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~ 418 (436)
..|+..+.+ ..|.+||+.++.. .... . ...+....|+|||+.++.+.... ..|.++|+..+..
T Consensus 346 -~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 346 -DLIAFTKQGGGQFSIGVMKPDGSGE-RILT-S--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred -CEEEEEEcCCCceEEEEEECCCCce-Eecc-C--CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 666665443 3688889866542 2211 1 22466789999999755544433 2578888866543
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=4e-13 Score=125.81 Aligned_cols=211 Identities=12% Similarity=0.063 Sum_probs=127.3
Q ss_pred CCCCCCcEEEEeeCC---CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCc
Q 013827 138 KDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN 214 (436)
Q Consensus 138 ~~s~~~~~l~~g~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 214 (436)
.|+|||+.|+..+.+ ..|.+||+.+++... +......+...+|+|+|..
T Consensus 202 ~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----------------------------l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 202 AWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----------------------------VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred eEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----------------------------eecCCCCccceEECCCCCE
Confidence 349999999987743 459999998654321 1123344568899999875
Q ss_pred EEEEEeCCCcEEEEe--CCCCeEEEEEcccCCCeEEEEEcCCCCCEEE-EEECCCcEEEEecC--CCCCccceEeeeCCe
Q 013827 215 ILASASADKQVKIWD--VAAGKCNLTLEHHTDKVQAVAWNHHSPQILL-SGSFDRSVVMKDAR--ISTHSGFKWAVAADV 289 (436)
Q Consensus 215 ~l~s~~~dg~v~vwd--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~i~~wd~~--~~~~~~~~~~~~~~i 289 (436)
++++.+.+|...||. +..+. ...+..+........|+|+| ..++ ++..++...+|.+. ++.... ........
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG-~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~ 330 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDG-RSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYN 330 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCC-CEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCc
Confidence 556778888766665 44443 45555555566778999999 5555 44445677777654 332211 12222334
Q ss_pred eEEEeCCCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeC-CCc--EE
Q 013827 290 ESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKM--VK 364 (436)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d~~--i~ 364 (436)
...+|+|+|..++++...++ .|.+||+.++. ...+. .......+.|+|++ ..|+..+. .|. +.
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~----------~~~lt-~~~~~~~p~~spdg-~~l~~~~~~~g~~~l~ 398 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ----------VTALT-DTTRDESPSFAPNG-RYILYATQQGGRSVLA 398 (427)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEECCCCC----------eEEcc-CCCCccCceECCCC-CEEEEEEecCCCEEEE
Confidence 56789999864444443333 69999998762 11222 12234678999999 55555544 443 55
Q ss_pred EEECCCCCceeEEeeCCCCCcEEEEEEcCC
Q 013827 365 LWDLSNNQPSCIASRNPKAGAVFSVAFSED 394 (436)
Q Consensus 365 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 394 (436)
+.++.... ...+..+.+.+...+|+|-
T Consensus 399 ~~~~~g~~---~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 399 AVSSDGRI---KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEECCCCc---eEEeecCCCCCCCCccCCC
Confidence 55664322 2233344556777788874
No 235
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=3.7e-13 Score=115.02 Aligned_cols=214 Identities=13% Similarity=0.165 Sum_probs=157.9
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCC
Q 013827 143 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 222 (436)
Q Consensus 143 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 222 (436)
...|++|-.+|.+.+|....+..-... + ..+. -...+..+.-++..+.++|+|+..
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~----------------------l-~~la-~g~g~~~~r~~~~~p~Iva~GGke 170 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSK----------------------L-IKLA-TGPGLYDVRQTDTDPYIVATGGKE 170 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCcccccc----------------------c-eeee-cCCceeeeccCCCCCceEecCchh
Confidence 445778888999999998754422110 0 0011 224566777777767788889999
Q ss_pred --CcEEEEeCCCCeEEEEEccc---------CCCeEEEEEcCC--CCCEEEEEECCCcEEEEecCCCCCccceE-eeeCC
Q 013827 223 --KQVKIWDVAAGKCNLTLEHH---------TDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTHSGFKW-AVAAD 288 (436)
Q Consensus 223 --g~v~vwd~~~~~~~~~~~~~---------~~~v~~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~ 288 (436)
..+.+||++..+.+.+-+.- .-.++++.|.+. . +.|++++.-+.+++||.+.++.+...+ -...+
T Consensus 171 ~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~ 249 (412)
T KOG3881|consen 171 NINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRRPVAQFDFLENP 249 (412)
T ss_pred cccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCcceeEeccccCc
Confidence 88999999988555443211 123567888776 4 789999999999999999877665444 35778
Q ss_pred eeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 013827 289 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 368 (436)
Q Consensus 289 i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~ 368 (436)
++++...|.+ +++++|..-+.+..||++.+. -....+.+..+.|.++..+|.+ .++++++-|..|||+|+
T Consensus 250 is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~k--------l~g~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 250 ISSTGLTPSG-NFIYTGNTKGQLAKFDLRGGK--------LLGCGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDI 319 (412)
T ss_pred ceeeeecCCC-cEEEEecccchhheecccCce--------eeccccCCccCCcceEEEcCCC-ceEEeeccceeEEEeec
Confidence 9999999977 789999999999999999882 2334478889999999999988 89999999999999999
Q ss_pred CCCCceeEEeeCCCCCcEEEEEEcCC
Q 013827 369 SNNQPSCIASRNPKAGAVFSVAFSED 394 (436)
Q Consensus 369 ~~~~~~~~~~~~~~~~~v~~~~~~~~ 394 (436)
.+.++...... ...++++-+.++
T Consensus 320 ktrkll~kvYv---Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 320 KTRKLLHKVYV---KSRLTFILLRDD 342 (412)
T ss_pred ccchhhhhhhh---hccccEEEecCC
Confidence 99663222111 234566666543
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.1e-12 Score=123.41 Aligned_cols=200 Identities=17% Similarity=0.148 Sum_probs=129.4
Q ss_pred CcccceeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCC--cEEEEe
Q 013827 198 SHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD 272 (436)
Q Consensus 198 ~h~~~v~~~~~~~~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd 272 (436)
.+...+.+.+|+|+|. .|+..+.+ ..|.+||+.+++.. .+....+...+.+|+|+|..++++.+.+| .|.+||
T Consensus 201 ~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d 278 (433)
T PRK04922 201 RSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMD 278 (433)
T ss_pred cCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEE
Confidence 4667899999999975 66666533 46999999887653 33334445567899999954555666666 599999
Q ss_pred cCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCc--EEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC
Q 013827 273 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 350 (436)
Q Consensus 273 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 350 (436)
+.++.... ...+.......+|+|++..++++...+|. |.++|+.+++ ...+..+......++|+|++
T Consensus 279 ~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~----------~~~lt~~g~~~~~~~~SpDG 347 (433)
T PRK04922 279 LGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS----------AERLTFQGNYNARASVSPDG 347 (433)
T ss_pred CCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC----------eEEeecCCCCccCEEECCCC
Confidence 98765433 23333445678999998655556555665 5555665541 22222233345578999999
Q ss_pred CCEEEEEeCCC---cEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCC--CcEEEEeCCC
Q 013827 351 PNLLATGSTDK---MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIWDTLS 415 (436)
Q Consensus 351 ~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~ 415 (436)
..|+..+.++ .|.+||+.+++... +. +........|+|||++++.+.... +.|.++++..
T Consensus 348 -~~Ia~~~~~~~~~~I~v~d~~~g~~~~---Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 348 -KKIAMVHGSGGQYRIAVMDLSTGSVRT---LT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred -CEEEEEECCCCceeEEEEECCCCCeEE---CC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 6666654432 59999998876432 22 122344678999999755554433 3577777754
No 237
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=3.2e-12 Score=114.38 Aligned_cols=291 Identities=13% Similarity=0.218 Sum_probs=180.1
Q ss_pred ccccceeccCCceEEEEEe-----cCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 75 DLEDMTINPNDAVIVCARN-----EDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 75 ~v~~~~~sp~~~~l~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
.++++.|||-|++|.+-.. ++..+.-.+.+|+..+. ....+-...... .+|.+| +.|..+.| =
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~---~~~s~~q~k~Q~-~W~~qf-------s~dEsl~a-r 142 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETG---VQRSQIQKKMQN-GWVPQF-------SIDESLAA-R 142 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccc---eehhheehhhhc-Cccccc-------ccchhhhh-h
Confidence 6899999999999887321 22222334555655543 111111111110 124444 77776443 3
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCC-CcEEEE-----EeCCC
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILAS-----ASADK 223 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s-----~~~dg 223 (436)
-..+.+.+|+....+..... -|...|+.+.++|.+ ...+|+ .+.-.
T Consensus 143 lv~nev~f~~~~~f~~~~~k----------------------------l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa 194 (566)
T KOG2315|consen 143 LVSNEVQFYDLGSFKTIQHK----------------------------LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPA 194 (566)
T ss_pred hhcceEEEEecCCccceeee----------------------------eeccceeeEEecCCCCCceEEEEccCCCCCCc
Confidence 34678999998763332211 267789999999973 334443 35566
Q ss_pred cEEEEeCCCCeEEEEE---cccCCCeEEEEEcCCCCCEEEEEECC-----------CcEEEEecCCCCCccceEeeeCCe
Q 013827 224 QVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSPQILLSGSFD-----------RSVVMKDARISTHSGFKWAVAADV 289 (436)
Q Consensus 224 ~v~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d-----------~~i~~wd~~~~~~~~~~~~~~~~i 289 (436)
.|+||.......-..+ .-....=..+.|++.|..+|+.++.| .++++.++.. ..........++|
T Consensus 195 ~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g-~s~~V~L~k~GPV 273 (566)
T KOG2315|consen 195 SVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG-ESVSVPLLKEGPV 273 (566)
T ss_pred EEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC-ceEEEecCCCCCc
Confidence 8999988633211111 11122234688998885666555432 3677877772 2233344557999
Q ss_pred eEEEeCCCCCcEEE-EEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeC---CCcEEE
Q 013827 290 ESLAWDPHAEHSFV-VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST---DKMVKL 365 (436)
Q Consensus 290 ~~~~~~~~~~~~~~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---d~~i~i 365 (436)
.++.|+|++..+.+ .|..--.+.|||++.. ..+.-..++-+++-|+|.| ++|+.++. -|.|-+
T Consensus 274 hdv~W~~s~~EF~VvyGfMPAkvtifnlr~~------------~v~df~egpRN~~~fnp~g-~ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 274 HDVTWSPSGREFAVVYGFMPAKVTIFNLRGK------------PVFDFPEGPRNTAFFNPHG-NIILLAGFGNLPGDMEV 340 (566)
T ss_pred eEEEECCCCCEEEEEEecccceEEEEcCCCC------------EeEeCCCCCccceEECCCC-CEEEEeecCCCCCceEE
Confidence 99999998854433 3566788999999853 2344457788899999999 77777666 478999
Q ss_pred EECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeC------CCcEEEEeCCCCcccccccc
Q 013827 366 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS------KGKLEIWDTLSDAGISNRFS 424 (436)
Q Consensus 366 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~ 424 (436)
||+.+.+ .+..+... .-+-+.|+|||+| ++|+.. |+.++||+......-.+.|.
T Consensus 341 wDv~n~K--~i~~~~a~--~tt~~eW~PdGe~-flTATTaPRlrvdNg~KiwhytG~~l~~~~f~ 400 (566)
T KOG2315|consen 341 WDVPNRK--LIAKFKAA--NTTVFEWSPDGEY-FLTATTAPRLRVDNGIKIWHYTGSLLHEKMFK 400 (566)
T ss_pred Eeccchh--hccccccC--CceEEEEcCCCcE-EEEEeccccEEecCCeEEEEecCceeehhhhh
Confidence 9999866 44444433 3445789999998 445543 78899999865443333333
No 238
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.54 E-value=5.5e-12 Score=104.01 Aligned_cols=294 Identities=14% Similarity=0.101 Sum_probs=187.4
Q ss_pred eEEEEEecCC-------cceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCc-EEEEeeCCCcEEEE
Q 013827 87 VIVCARNEDD-------VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAVGSMEPAIEIW 158 (436)
Q Consensus 87 ~l~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~vw 158 (436)
+||+|+..=+ ++..++..|+....+...+. .-+..-.+..+-+.|..- ..+|. .|+-+..+|.|.++
T Consensus 26 vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~-~~q~~dts~~~dm~w~~~----~~~g~~~l~~a~a~G~i~~~ 100 (339)
T KOG0280|consen 26 VLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLD-TLQCTDTSTEFDMLWRIR----ETDGDFNLLDAHARGQIQLY 100 (339)
T ss_pred eEEEeeEEecCCCCchheeccceEEEeecccccCccc-eeeeecccccceeeeeec----cCCccceeeeccccceEEEE
Confidence 7777755311 23456777776665322211 011111122334555322 23455 56777788999999
Q ss_pred eCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeE--E
Q 013827 159 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC--N 236 (436)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~--~ 236 (436)
..+..........+. ... --.....++.|++.+ ..++++..+|.+.+-+...... +
T Consensus 101 r~~~~~ss~~L~~ls---------------~~k------i~~~~~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~le~v 158 (339)
T KOG0280|consen 101 RNDEDESSVHLRGLS---------------SKK------ISVVEALSLDISTSG-TKIFVSDSRGSISGVYETEMVLEKV 158 (339)
T ss_pred eeccceeeeeecccc---------------hhh------hhheeeeEEEeeccC-ceEEEEcCCCcEEEEecceeeeeec
Confidence 876433221110000 000 001135678899886 5788888899999766555433 4
Q ss_pred EEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc--ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEE
Q 013827 237 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF 314 (436)
Q Consensus 237 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~ 314 (436)
+..+.|.-+++...|+...++++.+|+.|+.+..||+|.++... ....|...|.++.-+|..+..+++|+.|-.|++|
T Consensus 159 q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~ 238 (339)
T KOG0280|consen 159 QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVL 238 (339)
T ss_pred ccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeee
Confidence 47889999999999999888999999999999999999544221 1345788899999998888899999999999999
Q ss_pred eCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCce---eEEeeCCCCCcEEEEEE
Q 013827 315 DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS---CIASRNPKAGAVFSVAF 391 (436)
Q Consensus 315 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~ 391 (436)
|.|+.. +++..-. -.+.|..+.++|.-...++.+..-+-.+|-++...... .......|.+-+..-.|
T Consensus 239 DtRnm~--------kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DW 309 (339)
T KOG0280|consen 239 DTRNMG--------KPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDW 309 (339)
T ss_pred ehhccc--------CccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeecccc
Confidence 999763 3333322 23889999999965445555555555777777665433 34445566666666667
Q ss_pred cCCCCcEEEEEe-CCCcEE-EEeCCCCc
Q 013827 392 SEDSPFVLAIGG-SKGKLE-IWDTLSDA 417 (436)
Q Consensus 392 ~~~~~~~l~s~~-~dg~i~-iwd~~~~~ 417 (436)
..... +|||++ .|..++ +|-.-++.
T Consensus 310 d~~~~-~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 310 DSKDS-FLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred ccccc-eeeeeeccccceeeeeeeccCC
Confidence 44434 577754 466644 77655543
No 239
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.53 E-value=1.3e-13 Score=126.85 Aligned_cols=298 Identities=19% Similarity=0.294 Sum_probs=207.5
Q ss_pred ccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCC
Q 013827 73 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME 152 (436)
Q Consensus 73 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 152 (436)
++.+.++.++|.|+-+|.++.. .+++.+......+..+.+|-. |-.+-..+|.+ +|.-.+-++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~------gl~i~dld~p~~ppr~l~h~t--pw~vad~qws~-----h~a~~~wiVsts~ 90 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQ------GLYIIDLDDPFTPPRWLHHIT--PWQVADVQWSP-----HPAKPYWIVSTSN 90 (1081)
T ss_pred cCcccceeeccccchhhhhhhc------CeEEEeccCCCCCceeeeccC--cchhcceeccc-----CCCCceeEEecCc
Confidence 5678899999999999998765 466666666666677888743 33444566632 2333444444444
Q ss_pred CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 153 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 232 (436)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~ 232 (436)
..-.+|++... ....+...+.+|...|+.+.|+|..+..+++++.|-.+..||+++
T Consensus 91 qkaiiwnlA~s------------------------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS 146 (1081)
T KOG0309|consen 91 QKAIIWNLAKS------------------------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS 146 (1081)
T ss_pred chhhhhhhhcC------------------------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC
Confidence 55559998632 223445557799999999999999888999999999999999987
Q ss_pred Ce-EEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc-ceEeeeCCeeEEEeCCCCCcEEEEEeCCCc
Q 013827 233 GK-CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAEHSFVVSLEDGT 310 (436)
Q Consensus 233 ~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~ 310 (436)
.. ++..+..-......++|+...+. +++.+..+.|++||++.+..+. ...++...++.++|+.--...+.+++.|++
T Consensus 147 p~~p~ys~~~w~s~asqVkwnyk~p~-vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t 225 (1081)
T KOG0309|consen 147 PHRPFYSTSSWRSAASQVKWNYKDPN-VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT 225 (1081)
T ss_pred CCcceeeeecccccCceeeecccCcc-hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc
Confidence 53 44555545566788999987745 4555667889999999876654 334566778888888765567899999999
Q ss_pred EEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeC-CCcEEEEECCCC--------CceeEEeeCC
Q 013827 311 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKMVKLWDLSNN--------QPSCIASRNP 381 (436)
Q Consensus 311 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d~~i~iwd~~~~--------~~~~~~~~~~ 381 (436)
|++||..+... ..........+|..-.+.|.|..+++--.. +..+.+++.+.. .+..+..+.+
T Consensus 226 vkfw~y~kSt~--------e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G 297 (1081)
T KOG0309|consen 226 VKFWDYSKSTT--------ESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG 297 (1081)
T ss_pred eeeeccccccc--------ccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC
Confidence 99999987632 122233345677778888877544443322 223444433321 1246788899
Q ss_pred CCCcEEEEEEcCC---------CCcEEEEEeCCCcEEEEeCCCC
Q 013827 382 KAGAVFSVAFSED---------SPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 382 ~~~~v~~~~~~~~---------~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
|...|..+.|-.. ..+-|+|-+.|..+++|-+.+.
T Consensus 298 H~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 298 HDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred cchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 9988877766432 2356999999999999988653
No 240
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.50 E-value=5.4e-12 Score=104.09 Aligned_cols=152 Identities=17% Similarity=0.323 Sum_probs=101.5
Q ss_pred eEEEecCCCCcEEEEEeC---------CCcEEEEeCCC-CeEEEEEcc-cCCCeEEEEEcCCCCCEEEE-EECCCcEEEE
Q 013827 204 LGLAWNKEFRNILASASA---------DKQVKIWDVAA-GKCNLTLEH-HTDKVQAVAWNHHSPQILLS-GSFDRSVVMK 271 (436)
Q Consensus 204 ~~~~~~~~~~~~l~s~~~---------dg~v~vwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s-~~~d~~i~~w 271 (436)
..+.|+|+|..+++.... -+...+|.++. +..+..+.- ..++|.+++|+|++..+++. |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 468899998755555542 13355555532 233444432 34579999999999443333 4467899999
Q ss_pred ecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeC---CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecC
Q 013827 272 DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE---DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP 348 (436)
Q Consensus 272 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 348 (436)
|++ .+.+. .-....+..+.|+|+|. ++++++. .|.|.+||.++. +.+.... ...++.++|+|
T Consensus 89 d~~-~~~i~--~~~~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~---------~~i~~~~--~~~~t~~~WsP 153 (194)
T PF08662_consen 89 DVK-GKKIF--SFGTQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKK---------KKISTFE--HSDATDVEWSP 153 (194)
T ss_pred cCc-ccEeE--eecCCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCC---------EEeeccc--cCcEEEEEEcC
Confidence 997 22222 22356788999999985 5665543 477999999966 3343333 33578999999
Q ss_pred CCCCEEEEEeC------CCcEEEEECCCC
Q 013827 349 LVPNLLATGST------DKMVKLWDLSNN 371 (436)
Q Consensus 349 ~~~~~l~~~~~------d~~i~iwd~~~~ 371 (436)
+| ++|+++.. |+.++||+....
T Consensus 154 dG-r~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 154 DG-RYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CC-CEEEEEEeccceeccccEEEEEecCe
Confidence 99 78877764 788999998644
No 241
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.48 E-value=8.5e-12 Score=105.13 Aligned_cols=257 Identities=16% Similarity=0.239 Sum_probs=171.0
Q ss_pred CCcccCCCCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCC
Q 013827 62 DPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE 141 (436)
Q Consensus 62 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 141 (436)
.|.+-..-++|.+.|++...-|-.+-+..++.+. .+.+|-..+..+.-.-..|. .|..+.++.+ ++
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~dr-----tvrv~lkrds~q~wpsI~~~--mP~~~~~~~y-------~~ 78 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDR-----TVRVWLKRDSGQYWPSIYHY--MPSPCSAMEY-------VS 78 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccc-----eeeeEEeccccccCchhhhh--CCCCceEeee-------ec
Confidence 3434344457888999999999888888887775 45554333321112223333 3344455555 78
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 221 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 221 (436)
+...|++|-..|++.-+.+.. ...+.........|...|..+-|+.. ...+++.+.
T Consensus 79 e~~~L~vg~~ngtvtefs~se-----------------------dfnkm~~~r~~~~h~~~v~~~if~~~-~e~V~s~~~ 134 (404)
T KOG1409|consen 79 ESRRLYVGQDNGTVTEFALSE-----------------------DFNKMTFLKDYLAHQARVSAIVFSLT-HEWVLSTGK 134 (404)
T ss_pred cceEEEEEEecceEEEEEhhh-----------------------hhhhcchhhhhhhhhcceeeEEecCC-ceeEEEecc
Confidence 899999999999999887652 11223333345579999999999987 468999999
Q ss_pred CCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC--CCccceEeeeCCeeEEEeCCCCC
Q 013827 222 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--THSGFKWAVAADVESLAWDPHAE 299 (436)
Q Consensus 222 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~i~~~~~~~~~~ 299 (436)
|..+.---.+.+..+..+. .....+++.+.- .+...|...|.|.+..+... ..+..+.+|.+.+.+++|.|..
T Consensus 135 dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~- 209 (404)
T KOG1409|consen 135 DKQFAWHCTESGNRLGGYN-FETPASALQFDA---LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ- 209 (404)
T ss_pred ccceEEEeeccCCcccceE-eeccCCCCceee---EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC-
Confidence 8776544444443322111 001111111111 13445555666666554433 3344456788999999999954
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 013827 300 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 300 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~ 370 (436)
.++++|..|..+.+||+.-.+ .....+.+|...|..+...+.- ..+.+++.||.|.+|+++.
T Consensus 210 ~~LfSg~~d~~vi~wdigg~~--------g~~~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 210 RLLFSGASDHSVIMWDIGGRK--------GTAYELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred cEEEeccccCceEEEeccCCc--------ceeeeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEeccc
Confidence 799999999999999997662 4567788999999999888876 8899999999999999854
No 242
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=4.3e-11 Score=112.51 Aligned_cols=205 Identities=13% Similarity=0.102 Sum_probs=123.6
Q ss_pred CcccceeEEEecCCCCcEEEEEeCCC--cEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCc--EEEEec
Q 013827 198 SHTDSVLGLAWNKEFRNILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKDA 273 (436)
Q Consensus 198 ~h~~~v~~~~~~~~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~--i~~wd~ 273 (436)
.+...+....|+|+|..++++...++ .|.+||+.+++... +...........|+|+|..++++.+.++. |.++|+
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence 35667889999999864444443333 58889998876432 32223344578999999445556677775 777788
Q ss_pred CCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCc--EEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCC
Q 013827 274 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP 351 (436)
Q Consensus 274 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 351 (436)
.++.... ...+.......+|+|++..++++...++. |.++|+.+++ ...+...........|+|++
T Consensus 294 ~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~----------~~~Lt~~g~~~~~~~~SpDG- 361 (448)
T PRK04792 294 ATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK----------VSRLTFEGEQNLGGSITPDG- 361 (448)
T ss_pred CCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC----------EEEEecCCCCCcCeeECCCC-
Confidence 7655332 22334456778999998766666655554 5555665541 12222222233457899999
Q ss_pred CEEEEEeC-CC--cEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCc--EEEEeCCCCcccc
Q 013827 352 NLLATGST-DK--MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDTLSDAGIS 420 (436)
Q Consensus 352 ~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~ 420 (436)
.+|+..+. ++ .|.++|+.+++...+. .. .......|+|||+.++.+...+|. +++++. ++....
T Consensus 362 ~~l~~~~~~~g~~~I~~~dl~~g~~~~lt---~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~ 430 (448)
T PRK04792 362 RSMIMVNRTNGKFNIARQDLETGAMQVLT---ST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKA 430 (448)
T ss_pred CEEEEEEecCCceEEEEEECCCCCeEEcc---CC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceE
Confidence 55555443 44 4566788777642221 11 112245799999976666655554 666676 344333
No 243
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=4.7e-11 Score=112.29 Aligned_cols=214 Identities=14% Similarity=0.082 Sum_probs=125.5
Q ss_pred CCCCCCCcEEEEeeCC---CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCC
Q 013827 137 LKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR 213 (436)
Q Consensus 137 ~~~s~~~~~l~~g~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 213 (436)
+.|+|||+.|+..+.+ ..|.+||+.+++... +..........+|+|+|.
T Consensus 223 p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----------------------------lt~~~g~~~~~~wSPDG~ 274 (448)
T PRK04792 223 PAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----------------------------VTSFPGINGAPRFSPDGK 274 (448)
T ss_pred ceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----------------------------ecCCCCCcCCeeECCCCC
Confidence 3449999999877543 358888887643211 001122334689999987
Q ss_pred cEEEEEeCCCc--EEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCc--EEEEecCCCCCccceEeeeCCe
Q 013827 214 NILASASADKQ--VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKDARISTHSGFKWAVAADV 289 (436)
Q Consensus 214 ~~l~s~~~dg~--v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~--i~~wd~~~~~~~~~~~~~~~~i 289 (436)
.++++.+.+|. |.++|+.+++. ..+..+........|+|++..++++...++. |.++|+.+++.... .......
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~ 352 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQN 352 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCC
Confidence 56566777775 77788887764 4454455566788999999444444444454 55566665543321 1122233
Q ss_pred eEEEeCCCCCcEEEEEeCCCc--EEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCc--EEE
Q 013827 290 ESLAWDPHAEHSFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM--VKL 365 (436)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--i~i 365 (436)
...+|+|+|..++++...++. |.++|+.++. ...+... .......|+|++..++++...++. +++
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~----------~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~ 421 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGA----------MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAA 421 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCCC----------eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 457899999766666555554 4556766552 1112111 112245799999444444444544 667
Q ss_pred EECCCCCceeEEeeCCCCCcEEEEEEcCC
Q 013827 366 WDLSNNQPSCIASRNPKAGAVFSVAFSED 394 (436)
Q Consensus 366 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 394 (436)
++..... ...+..+.+.+...+|+|-
T Consensus 422 ~~~~G~~---~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 422 VSIDGRF---KARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EECCCCc---eEECcCCCCCcCCCccCCC
Confidence 7775433 2333444456677788873
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.46 E-value=4e-11 Score=112.97 Aligned_cols=189 Identities=16% Similarity=0.145 Sum_probs=118.1
Q ss_pred CCCCCCcEEEEeeCC---CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCc
Q 013827 138 KDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN 214 (436)
Q Consensus 138 ~~s~~~~~l~~g~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 214 (436)
.|+|||++||.+..+ ..|++||+.+++... +..+...+.+++|+|+|..
T Consensus 196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----------------------------~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----------------------------VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----------------------------eecCCCCccceEECCCCCE
Confidence 449999999987654 479999997643221 1124455677899999865
Q ss_pred EEEEEeCCC--cEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEE-CCC--cEEEEecCCCCCccceEeeeCCe
Q 013827 215 ILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-FDR--SVVMKDARISTHSGFKWAVAADV 289 (436)
Q Consensus 215 ~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~--~i~~wd~~~~~~~~~~~~~~~~i 289 (436)
++++.+.++ .|.+||+.+++. ..+..+........|+|++ ..|+..+ .++ .|.++|+.+.+... ........
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~~~ 324 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDG-KSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGGYN 324 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCc
Confidence 555666555 588899887654 3444455555678999999 5555444 344 57777776554322 22334556
Q ss_pred eEEEeCCCCCcEEEEEeCCC---cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCC---cE
Q 013827 290 ESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK---MV 363 (436)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~---~i 363 (436)
....|+|++. .++.+..++ .|.+||+.+.. ...+.. ........|+|++ ..|+..+.++ .+
T Consensus 325 ~~~~~spdg~-~i~~~~~~~~~~~i~~~d~~~~~----------~~~l~~-~~~~~~p~~spdg-~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 325 ASPSWSPDGD-LIAFVHREGGGFNIAVMDLDGGG----------ERVLTD-TGLDESPSFAPNG-RMILYATTRGGRGVL 391 (417)
T ss_pred cCeEECCCCC-EEEEEEccCCceEEEEEeCCCCC----------eEEccC-CCCCCCceECCCC-CEEEEEEeCCCcEEE
Confidence 7889999885 555555544 68888887641 112221 1223456899999 6665555543 35
Q ss_pred EEEECCC
Q 013827 364 KLWDLSN 370 (436)
Q Consensus 364 ~iwd~~~ 370 (436)
++.+...
T Consensus 392 ~~~~~~g 398 (417)
T TIGR02800 392 GLVSTDG 398 (417)
T ss_pred EEEECCC
Confidence 5555443
No 245
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.46 E-value=4.9e-11 Score=112.36 Aligned_cols=199 Identities=18% Similarity=0.181 Sum_probs=128.1
Q ss_pred CcccceeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCC--cEEEEe
Q 013827 198 SHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD 272 (436)
Q Consensus 198 ~h~~~v~~~~~~~~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd 272 (436)
.+...+...+|+|+|. +|+.+..+ ..|++||+.+++... +..+...+.+++|+|++..++++.+.++ .|.+||
T Consensus 187 ~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d 264 (417)
T TIGR02800 187 RSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD 264 (417)
T ss_pred cCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence 4556788999999985 66655543 479999998876543 3335566778999999944445555554 588888
Q ss_pred cCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC
Q 013827 273 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 350 (436)
Q Consensus 273 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 350 (436)
+.+..... ...+........|+|++..+++++..++ .|.++|+.+. . ...+..+......+.|+|++
T Consensus 265 ~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~---------~-~~~l~~~~~~~~~~~~spdg 333 (417)
T TIGR02800 265 LDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG---------E-VRRLTFRGGYNASPSWSPDG 333 (417)
T ss_pred CCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC---------C-EEEeecCCCCccCeEECCCC
Confidence 87664332 2223344556789998865555555454 4667777654 1 23344455667788999999
Q ss_pred CCEEEEEeCCC---cEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCC--cEEEEeCC
Q 013827 351 PNLLATGSTDK---MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG--KLEIWDTL 414 (436)
Q Consensus 351 ~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~ 414 (436)
.+|+.++.++ .|.+||+.++....+ ... .......|+|+|++++++...++ .+++.+..
T Consensus 334 -~~i~~~~~~~~~~~i~~~d~~~~~~~~l---~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 334 -DLIAFVHREGGGFNIAVMDLDGGGERVL---TDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred -CEEEEEEccCCceEEEEEeCCCCCeEEc---cCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 7777777665 788999987653222 211 12345689999997555444443 35555543
No 246
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1e-10 Score=109.05 Aligned_cols=209 Identities=10% Similarity=0.061 Sum_probs=125.5
Q ss_pred cccceeEEEecCCCCc--EEEEEeCCC--cEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCC----cEEE
Q 013827 199 HTDSVLGLAWNKEFRN--ILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR----SVVM 270 (436)
Q Consensus 199 h~~~v~~~~~~~~~~~--~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~----~i~~ 270 (436)
....+..-+|+|||.. ++++...+| .|.+.++.+++.. .+....+.....+|+|||..++++...+| .+..
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~ 261 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS 261 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence 3445677899999865 333454444 5778888877543 33324445567899999944444443333 3444
Q ss_pred EecCCCC--CccceEee-eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEec
Q 013827 271 KDARIST--HSGFKWAV-AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN 347 (436)
Q Consensus 271 wd~~~~~--~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 347 (436)
|++.... ........ .......+|+|+|..++++...+|...+|.+..... ......+..+...+....|+
T Consensus 262 ~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~------g~~~~~lt~~~~~~~~p~wS 335 (428)
T PRK01029 262 FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE------GQSPRLLTKKYRNSSCPAWS 335 (428)
T ss_pred eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc------ccceEEeccCCCCccceeEC
Confidence 6765431 12212222 233467899999976666666677656664422100 01123344444567789999
Q ss_pred CCCCCEEEEEeC-C--CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeC--CCcEEEEeCCCCcc
Q 013827 348 PLVPNLLATGST-D--KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS--KGKLEIWDTLSDAG 418 (436)
Q Consensus 348 p~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~ 418 (436)
|+| +.|+..+. + ..|.+||+.+++...+ ......+....|+|||+++++++.. ...|+++|+..++.
T Consensus 336 PDG-~~Laf~~~~~g~~~I~v~dl~~g~~~~L---t~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 336 PDG-KKIAFCSVIKGVRQICVYDLATGRDYQL---TTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred CCC-CEEEEEEcCCCCcEEEEEECCCCCeEEc---cCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 999 66665443 3 3699999998874332 2223356778999999975555543 35688889877654
No 247
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=6.7e-11 Score=111.59 Aligned_cols=211 Identities=14% Similarity=0.126 Sum_probs=126.6
Q ss_pred CCCCCcEEEEeeCC---CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcE
Q 013827 139 DREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 215 (436)
Q Consensus 139 ~s~~~~~l~~g~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 215 (436)
|+|||+.|+..+.+ ..|.+|++.+++... +....+.+...+|+|+|..+
T Consensus 206 wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----------------------------l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 206 WSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----------------------------ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred ECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----------------------------ccCCCCCcCCeEECCCCCEE
Confidence 39999999877644 368899987654321 11122344568999998655
Q ss_pred EEEEeCCC--cEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCC--cEEEEecCCCCCccceEeeeCCeeE
Q 013827 216 LASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVAADVES 291 (436)
Q Consensus 216 l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~i~~ 291 (436)
+++.+.+| .|.+||+.+++. ..+..+........|+|++..++++...++ .|.++|+.+++..... ........
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~ 335 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNAR 335 (430)
T ss_pred EEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccc
Confidence 55666665 588889988764 345545556677899999944444444444 4666777665533221 11223445
Q ss_pred EEeCCCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeC-CC--cEEEE
Q 013827 292 LAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DK--MVKLW 366 (436)
Q Consensus 292 ~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d~--~i~iw 366 (436)
..|+|++..++++...++ .|.++|+.++. ...+. .........|+|+| +.++..+. ++ .+.++
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~----------~~~lt-~~~~~~~p~~spdg-~~i~~~~~~~g~~~l~~~ 403 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGS----------VRILT-DTSLDESPSVAPNG-TMLIYATRQQGRGVLMLV 403 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCC----------EEEcc-CCCCCCCceECCCC-CEEEEEEecCCceEEEEE
Confidence 789999865555554444 57888887752 11121 12222356899999 55555443 33 46667
Q ss_pred ECCCCCceeEEeeCCCCCcEEEEEEcCC
Q 013827 367 DLSNNQPSCIASRNPKAGAVFSVAFSED 394 (436)
Q Consensus 367 d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 394 (436)
++.... ...+..+.+.+...+|+|-
T Consensus 404 ~~~g~~---~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 404 SINGRV---RLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ECCCCc---eEECcCCCCCcCCCccCCC
Confidence 775543 2223334455667778763
No 248
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1e-10 Score=109.13 Aligned_cols=218 Identities=11% Similarity=0.058 Sum_probs=125.2
Q ss_pred CCCCCCCCcEEE---EeeCC--CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecC
Q 013827 136 PLKDREKGNFMA---VGSME--PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK 210 (436)
Q Consensus 136 ~~~~s~~~~~l~---~g~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 210 (436)
.+.|||||+.++ +...+ ..|.+.++.+++... +....+.....+|+|
T Consensus 189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----------------------------lt~~~g~~~~p~wSP 240 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----------------------------ILALQGNQLMPTFSP 240 (428)
T ss_pred cceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----------------------------eecCCCCccceEECC
Confidence 455699997532 33334 357777776544321 112233445689999
Q ss_pred CCCcEEEEEeCCC----cEEEEeCCCC---eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEec--CCC-CCcc
Q 013827 211 EFRNILASASADK----QVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA--RIS-THSG 280 (436)
Q Consensus 211 ~~~~~l~s~~~dg----~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~--~~~-~~~~ 280 (436)
||..++++...+| .+.+|++..+ +...............+|+|+|..++++...+|...+|.+ ... ....
T Consensus 241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~ 320 (428)
T PRK01029 241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR 320 (428)
T ss_pred CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE
Confidence 9865555544333 3444776652 3333333333345678999999334444445676556544 321 1122
Q ss_pred ceEeeeCCeeEEEeCCCCCcEEEEEeCC--CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEE-EE
Q 013827 281 FKWAVAADVESLAWDPHAEHSFVVSLED--GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA-TG 357 (436)
Q Consensus 281 ~~~~~~~~i~~~~~~~~~~~~~~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~ 357 (436)
........+....|+|+|..++++...+ ..|.+||+.+++ ...+......+....|+|++ +.|+ ++
T Consensus 321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~----------~~~Lt~~~~~~~~p~wSpDG-~~L~f~~ 389 (428)
T PRK01029 321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR----------DYQLTTSPENKESPSWAIDS-LHLVYSA 389 (428)
T ss_pred EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC----------eEEccCCCCCccceEECCCC-CEEEEEE
Confidence 1223334567889999996555555443 368999998762 12232233456779999998 5555 44
Q ss_pred eC--CCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCC
Q 013827 358 ST--DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS 395 (436)
Q Consensus 358 ~~--d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 395 (436)
.. ...|+++|+.+++...+.. ..+.+...+|+|-.
T Consensus 390 ~~~g~~~L~~vdl~~g~~~~Lt~---~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 390 GNSNESELYLISLITKKTRKIVI---GSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCCceEEEEECCCCCEEEeec---CCCcccCceecCCC
Confidence 33 3568888998876433332 33456677888753
No 249
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.45 E-value=6.4e-10 Score=101.26 Aligned_cols=287 Identities=13% Similarity=0.174 Sum_probs=165.0
Q ss_pred cccccceeccCCceEEEEEecC-CcceeEEEEEecCCCCCCceeeecccc-cCcCcceeecccCCCCCCCCCcEEEEeeC
Q 013827 74 EDLEDMTINPNDAVIVCARNED-DVSHLEVYILEESDGGDPNLYVHHHII-IPAFPLCMAWLDCPLKDREKGNFMAVGSM 151 (436)
Q Consensus 74 ~~v~~~~~sp~~~~l~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 151 (436)
....-++++|++++|.++.... ..+.+..+.++...+ .+....... ....|..++. +|++++|+++..
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g---~L~~~~~~~~~g~~p~~i~~-------~~~g~~l~vany 106 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG---TLTLLNSVPSGGSSPCHIAV-------DPDGRFLYVANY 106 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT---EEEEEEEEEESSSCEEEEEE-------CTTSSEEEEEET
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc---eeEEeeeeccCCCCcEEEEE-------ecCCCEEEEEEc
Confidence 4567789999999999887642 233344444444322 332222222 2222333333 899999999874
Q ss_pred -CCcEEEEeCCCCCCCccee-eecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 152 -EPAIEIWDLDVIDEVQPHV-ILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 152 -dg~i~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+|.|.+++++....+.... ...... ..... .........++.|+|+|+.++++.-....|.+|+
T Consensus 107 ~~g~v~v~~l~~~g~l~~~~~~~~~~g-----------~g~~~---~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 107 GGGSVSVFPLDDDGSLGEVVQTVRHEG-----------SGPNP---DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD 172 (345)
T ss_dssp TTTEEEEEEECTTSEEEEEEEEEESEE-----------EESST---TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cCCeEEEEEccCCcccceeeeecccCC-----------CCCcc---cccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence 7999999998643322211 100000 00000 0112344678999999864444444445899999
Q ss_pred CCCCe--E--EEEEc-ccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc-cceE---ee------eCCeeEEEe
Q 013827 230 VAAGK--C--NLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKW---AV------AADVESLAW 294 (436)
Q Consensus 230 ~~~~~--~--~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~---~~------~~~i~~~~~ 294 (436)
+.... . ...+. ........+.|+|++...+++...++.|.++++...... .... .. ......+++
T Consensus 173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i 252 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAI 252 (345)
T ss_dssp E-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE
T ss_pred EeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEE
Confidence 97654 2 12222 245678899999999555566677889999998832211 1111 11 125788999
Q ss_pred CCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEe-CCCcEEEEECC--CC
Q 013827 295 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLS--NN 371 (436)
Q Consensus 295 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~d~~i~iwd~~--~~ 371 (436)
+|++..++++....+.|.+|++..... ....+..+.........++++|++ ++|+++. .++.|.+|++. ++
T Consensus 253 spdg~~lyvsnr~~~sI~vf~~d~~~g-----~l~~~~~~~~~G~~Pr~~~~s~~g-~~l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 253 SPDGRFLYVSNRGSNSISVFDLDPATG-----TLTLVQTVPTGGKFPRHFAFSPDG-RYLYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp -TTSSEEEEEECTTTEEEEEEECTTTT-----TEEEEEEEEESSSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTT
T ss_pred ecCCCEEEEEeccCCEEEEEEEecCCC-----ceEEEEEEeCCCCCccEEEEeCCC-CEEEEEecCCCeEEEEEEeCCCC
Confidence 999977777777889999999943210 113334444445558899999999 6666665 57789999764 55
Q ss_pred CceeEEeeCCCCCcEEEEEE
Q 013827 372 QPSCIASRNPKAGAVFSVAF 391 (436)
Q Consensus 372 ~~~~~~~~~~~~~~v~~~~~ 391 (436)
.+...... .......|+.|
T Consensus 327 ~l~~~~~~-~~~~~p~ci~f 345 (345)
T PF10282_consen 327 KLTPVGSS-VPIPSPVCIVF 345 (345)
T ss_dssp EEEEEEEE-EESSSEEEEEE
T ss_pred cEEEeccc-ccCCCCEEEeC
Confidence 53333221 12234556655
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.45 E-value=1.2e-11 Score=118.35 Aligned_cols=198 Identities=14% Similarity=0.176 Sum_probs=154.4
Q ss_pred cceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCC----eEEEEEcCCCCCEEEEEECCCcEEEEecCCC
Q 013827 201 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDK----VQAVAWNHHSPQILLSGSFDRSVVMKDARIS 276 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 276 (436)
+.|....+..+ ...++.++.++.+.+||...+.....+...... ..-+.++++. -++++|+.-+.|.+|+....
T Consensus 88 ~wi~g~~l~~e-~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~d 165 (967)
T KOG0974|consen 88 DWIFGAKLFEE-NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHED 165 (967)
T ss_pred ccccccchhhh-cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcE-EEEEeccccccEEEEecccc
Confidence 34444555555 357888888999999999877666655422211 1122345555 68999999999999999866
Q ss_pred CCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEE
Q 013827 277 THSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT 356 (436)
Q Consensus 277 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 356 (436)
.......+|.+.+.++.++.+| .++++.++|.++++|++.+.+ ......-+|...+..+.|.|+ .+++
T Consensus 166 n~p~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~--------~~~~~~fgHsaRvw~~~~~~n---~i~t 233 (967)
T KOG0974|consen 166 NKPIRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSRE--------VLGCTGFGHSARVWACCFLPN---RIIT 233 (967)
T ss_pred CCcceecccCCceEEEEEccCC-cEEEEEecCcceeeeeccccc--------ccCcccccccceeEEEEeccc---eeEE
Confidence 6666688999999999999988 699999999999999999873 223466789999999999984 8999
Q ss_pred EeCCCcEEEEECCCCCceeEEeeCCCC-CcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 357 GSTDKMVKLWDLSNNQPSCIASRNPKA-GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 357 ~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
++.|.+.++|+....+. ..+.+|. ..++.++..++.. +++|++.|+.+++|++...
T Consensus 234 ~gedctcrvW~~~~~~l---~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 234 VGEDCTCRVWGVNGTQL---EVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eccceEEEEEeccccee---hhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhcc
Confidence 99999999997776553 2455553 4699999988887 6999999999999998653
No 251
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=9.4e-11 Score=110.59 Aligned_cols=200 Identities=13% Similarity=0.132 Sum_probs=125.0
Q ss_pred CcccceeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCC--cEEEEe
Q 013827 198 SHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD 272 (436)
Q Consensus 198 ~h~~~v~~~~~~~~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd 272 (436)
.+...+....|+|+|. .|+..+.+ ..|.+||+.+++... +....+.+....|+|+|..++++.+.++ .|.++|
T Consensus 196 ~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 196 QSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred cCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence 4667889999999985 55554433 368999998876533 3333445567899999944444565565 588889
Q ss_pred cCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC
Q 013827 273 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 350 (436)
Q Consensus 273 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 350 (436)
+.++.... ............|+|++..++++...+| .|.++|+.+++ ...+...........|+|++
T Consensus 274 ~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~----------~~~lt~~~~~~~~~~~Spdg 342 (430)
T PRK00178 274 LASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR----------AERVTFVGNYNARPRLSADG 342 (430)
T ss_pred CCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC----------EEEeecCCCCccceEECCCC
Confidence 88765432 2333445667889999876666665555 46666766552 11222122233457899999
Q ss_pred CCEEEEEeC-CC--cEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCc--EEEEeCCC
Q 013827 351 PNLLATGST-DK--MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDTLS 415 (436)
Q Consensus 351 ~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~ 415 (436)
..|+..+. ++ .|.++|+.+++...+.. .. ......|+|||+.++.+...+|. |.++++..
T Consensus 343 -~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~-~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 343 -KTLVMVHRQDGNFHVAAQDLQRGSVRILTD-TS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred -CEEEEEEccCCceEEEEEECCCCCEEEccC-CC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 66665544 33 58889998876433321 11 12245899999976665554444 66666643
No 252
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.44 E-value=6.7e-11 Score=107.51 Aligned_cols=195 Identities=15% Similarity=0.192 Sum_probs=138.5
Q ss_pred EE-EEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEE
Q 013827 215 IL-ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA 293 (436)
Q Consensus 215 ~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~ 293 (436)
++ ++-..++.|.+.|..+.+.+..+......-..+.++|++ +++++++.||.|.++|+.+.+... ..........++
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~-~i~~G~~~~~i~ 84 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVA-TIKVGGNPRGIA 84 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEE-EEE-SSEEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccEEE-EEecCCCcceEE
Confidence 44 455668999999999999999997654444567899999 788888999999999999988665 445566789999
Q ss_pred eCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEecc-------CCCeEEEEecCCCCCEEEEEeCCCcEEEE
Q 013827 294 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-------DKAVCTISYNPLVPNLLATGSTDKMVKLW 366 (436)
Q Consensus 294 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~p~~~~~l~~~~~d~~i~iw 366 (436)
++++|..++++...++.+.++|.++. +++..+... ...+..+..+|..+.++++--+.+.|.+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tl---------e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETL---------EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVV 155 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT-----------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccc---------cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEE
Confidence 99999766667778999999999987 445555432 34577888888874455555556889898
Q ss_pred ECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 367 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 367 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
|....+........ .........|+|+++|++++...+..|-++|..+++.+..
T Consensus 156 dy~d~~~~~~~~i~-~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 156 DYSDPKNLKVTTIK-VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp ETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred Eeccccccceeeec-ccccccccccCcccceeeecccccceeEEEeeccceEEEE
Confidence 98876654443333 2346788999999998778777888999999998877654
No 253
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.44 E-value=2e-10 Score=101.86 Aligned_cols=308 Identities=13% Similarity=0.148 Sum_probs=188.5
Q ss_pred CccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeC
Q 013827 72 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 151 (436)
Q Consensus 72 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 151 (436)
....+..+++||.|++|++....+ +.+| ...... ......|.. + ....|||.++||.+-+.
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~----V~~~--~g~~~~-~l~~~~~~~--------V----~~~~fSP~~kYL~tw~~ 91 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG----VECW--GGPSKA-KLVRFRHPD--------V----KYLDFSPNEKYLVTWSR 91 (561)
T ss_pred cCcchhheeecCcchheehhhccc----eEEc--cccchh-heeeeecCC--------c----eecccCcccceeeeecc
Confidence 456788999999999999987764 3444 333321 122222211 1 22345999999998765
Q ss_pred CC---------------cEEEEeCCCCCCCcceeeeccc------------chhhhhhccc--------CCCcccccccc
Q 013827 152 EP---------------AIEIWDLDVIDEVQPHVILGGI------------DEEKKKKKSK--------KGKKSSIKYKK 196 (436)
Q Consensus 152 dg---------------~i~vw~~~~~~~~~~~~~~~~~------------~~~~~~~~~~--------~~~~~~~~~~~ 196 (436)
.+ .+.|||..++..+......... +......... ..-.......+
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~l 171 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNL 171 (561)
T ss_pred CCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhc
Confidence 44 4999999988766543222211 0000000000 00000001111
Q ss_pred cCcccceeEEEecCCCCc-EEEE-----EeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEE-------
Q 013827 197 GSHTDSVLGLAWNKEFRN-ILAS-----ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS------- 263 (436)
Q Consensus 197 ~~h~~~v~~~~~~~~~~~-~l~s-----~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------- 263 (436)
....|....|+|.+.. .||. .+.++++++|.+..+..+.+-.-....=..+.|.+.|..+++-.-
T Consensus 172 --r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnK 249 (561)
T COG5354 172 --RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNK 249 (561)
T ss_pred --cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeeccc
Confidence 1256888889987432 2332 466789999999877665544333333456889998833332211
Q ss_pred ---CCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEE-eCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCC
Q 013827 264 ---FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK 339 (436)
Q Consensus 264 ---~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 339 (436)
....+.+++++........ ...++|..++|.|.+..+.++. ..+-.+.++|++.. ..+.....
T Consensus 250 syfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N------------l~~~~Pe~ 316 (561)
T COG5354 250 SYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN------------LRFYFPEQ 316 (561)
T ss_pred ceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc------------eEEecCCc
Confidence 1256788888855544433 6689999999999886554443 67889999999864 23334455
Q ss_pred CeEEEEecCCCCCEEEEEeCC---CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEe-----CCCcEEEE
Q 013827 340 AVCTISYNPLVPNLLATGSTD---KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-----SKGKLEIW 411 (436)
Q Consensus 340 ~v~~~~~~p~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-----~dg~i~iw 411 (436)
.-+.+.|+|.+ ++++.++.| |.+-+||...... ....+.+- ...-+.|+||++++..... .|..++||
T Consensus 317 ~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf~-~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~ 392 (561)
T COG5354 317 KRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRFK-VAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLW 392 (561)
T ss_pred ccccccccCcc-cEEEEecCCccccceEEeccCCceE-EEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEE
Confidence 56778999998 888887765 6799999987652 33244432 3445689999997443322 36789999
Q ss_pred eCCCCc
Q 013827 412 DTLSDA 417 (436)
Q Consensus 412 d~~~~~ 417 (436)
|+....
T Consensus 393 ~v~g~~ 398 (561)
T COG5354 393 DVYGAK 398 (561)
T ss_pred EecCch
Confidence 996544
No 254
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=4.7e-11 Score=107.28 Aligned_cols=238 Identities=18% Similarity=0.258 Sum_probs=166.8
Q ss_pred cccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCC
Q 013827 74 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP 153 (436)
Q Consensus 74 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 153 (436)
+.|.-.-++.|-.-++.-..+. .|- +....+ .|+...+|.+...+.+- .|+..+++.|+ ..
T Consensus 95 e~V~feiLsDD~SK~v~L~~DR-----~Ie-fHak~G------~hy~~RIP~~GRDm~y~------~~scDly~~gs-g~ 155 (703)
T KOG2321|consen 95 EVVDFEILSDDYSKSVFLQNDR-----TIE-FHAKYG------RHYRTRIPKFGRDMKYH------KPSCDLYLVGS-GS 155 (703)
T ss_pred cceeEEEeccchhhheEeecCc-----eee-ehhhcC------eeeeeecCcCCcccccc------CCCccEEEeec-Cc
Confidence 3444444455555555555553 222 222222 45555666655444442 35566555555 45
Q ss_pred cEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 154 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG 233 (436)
Q Consensus 154 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~ 233 (436)
.|+-++++.+..+.+ +....+.++++..++.. .+|++|+.+|.|..||.++.
T Consensus 156 evYRlNLEqGrfL~P---------------------------~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 156 EVYRLNLEQGRFLNP---------------------------FETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred ceEEEEccccccccc---------------------------cccccccceeeeecCcc-ceEEecccCceEEEecchhh
Confidence 777788887777665 33456889999999984 59999999999999999887
Q ss_pred eEEEEEc------ccCC-----CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccce-EeeeCCeeEEEeCCCCCcE
Q 013827 234 KCNLTLE------HHTD-----KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WAVAADVESLAWDPHAEHS 301 (436)
Q Consensus 234 ~~~~~~~------~~~~-----~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~ 301 (436)
..+..+. .|.+ .|+++.|+.+| -.+++|+.+|.+.+||+++.++.... .....+|..+.|.+.+..-
T Consensus 208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN 286 (703)
T ss_pred hhheeeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc
Confidence 6655553 2333 49999999998 88999999999999999998876522 2345678999998875555
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 013827 302 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 302 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~ 370 (436)
.++..+...++|||-.++ ++...+. ....++.+++-|++ .+++++-.++.+..|=+..
T Consensus 287 ~v~S~Dk~~~kiWd~~~G---------k~~asiE-pt~~lND~C~~p~s-Gm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 287 KVVSMDKRILKIWDECTG---------KPMASIE-PTSDLNDFCFVPGS-GMFFTANESSKMHTYYIPS 344 (703)
T ss_pred eEEecchHHhhhcccccC---------Cceeecc-ccCCcCceeeecCC-ceEEEecCCCcceeEEccc
Confidence 666777889999999887 3344443 34558999999988 7999998888877776654
No 255
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=2.8e-10 Score=102.04 Aligned_cols=299 Identities=13% Similarity=0.172 Sum_probs=191.5
Q ss_pred ccccceeccCCceEEEEEecCCcc------eeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEE
Q 013827 75 DLEDMTINPNDAVIVCARNEDDVS------HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV 148 (436)
Q Consensus 75 ~v~~~~~sp~~~~l~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 148 (436)
.|.-+.|||..++|++-+...... .-.+.+|+...+.....+..-.......|+ +.| |.|++++|-
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~-frW-------S~DdKy~Ar 322 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPI-FRW-------SHDDKYFAR 322 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccce-EEe-------ccCCceeEE
Confidence 488899999999999966543221 136778887776433333221222222222 344 999999998
Q ss_pred eeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC-----CC
Q 013827 149 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA-----DK 223 (436)
Q Consensus 149 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-----dg 223 (436)
-.. ..|.||+..+...+.... -.-..|....|+|.+ ++||--.. -.
T Consensus 323 m~~-~sisIyEtpsf~lld~Ks---------------------------lki~gIr~FswsP~~-~llAYwtpe~~~~pa 373 (698)
T KOG2314|consen 323 MTG-NSISIYETPSFMLLDKKS---------------------------LKISGIRDFSWSPTS-NLLAYWTPETNNIPA 373 (698)
T ss_pred ecc-ceEEEEecCceeeecccc---------------------------cCCccccCcccCCCc-ceEEEEcccccCCcc
Confidence 776 578899887644433211 134568889999984 57764322 13
Q ss_pred cEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEE----------ECCCcEEEEecCCCCCccceEeeeCCeeEEE
Q 013827 224 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG----------SFDRSVVMKDARISTHSGFKWAVAADVESLA 293 (436)
Q Consensus 224 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~----------~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~ 293 (436)
.+.+-.+.+++.+++-.-++-.=..+.|..+| .+|+.- +.-..+.|+.++....+.........+...+
T Consensus 374 rvtL~evPs~~~iRt~nlfnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~Fa 452 (698)
T KOG2314|consen 374 RVTLMEVPSKREIRTKNLFNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFA 452 (698)
T ss_pred eEEEEecCccceeeeccceeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeee
Confidence 56677777777776665554444557777777 555432 1222467788888887777788899999999
Q ss_pred eCCCCCcEEEEEeC--CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEE---eCCCcEEEEEC
Q 013827 294 WDPHAEHSFVVSLE--DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG---STDKMVKLWDL 368 (436)
Q Consensus 294 ~~~~~~~~~~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~---~~d~~i~iwd~ 368 (436)
|.|.|.++.+..+. ..++.+|.+.+... ....+..+. ....+.+.|+|.| ++++.+ |..|.+.++|+
T Consensus 453 WEP~gdkF~vi~g~~~k~tvsfY~~e~~~~-----~~~lVk~~d--k~~~N~vfwsPkG-~fvvva~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 453 WEPHGDKFAVISGNTVKNTVSFYAVETNIK-----KPSLVKELD--KKFANTVFWSPKG-RFVVVAALVSRRGDLEFYDT 524 (698)
T ss_pred eccCCCeEEEEEccccccceeEEEeecCCC-----chhhhhhhc--ccccceEEEcCCC-cEEEEEEecccccceEEEec
Confidence 99999765555544 35788998874311 112233333 3567889999999 777665 34788999999
Q ss_pred CCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeC------CCcEEEEeCCCCcccccc
Q 013827 369 SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS------KGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 369 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~ 422 (436)
...... ......|. ..+.+.|.|.|+| ++++++ |..-+||+++....-...
T Consensus 525 ~~a~~k-~~~~~eh~-~at~veWDPtGRY-vvT~ss~wrhk~d~GYri~tfqGrll~~~~ 581 (698)
T KOG2314|consen 525 DYADLK-DTASPEHF-AATEVEWDPTGRY-VVTSSSSWRHKVDNGYRIFTFQGRLLKEDI 581 (698)
T ss_pred chhhhh-hccCcccc-ccccceECCCCCE-EEEeeehhhhccccceEEEEeecHHHHHHH
Confidence 853321 22233343 4678999999997 666654 555788998765443333
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=1.1e-08 Score=87.58 Aligned_cols=277 Identities=11% Similarity=0.165 Sum_probs=174.1
Q ss_pred eEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCC---CcEEEEeCCCCCCCcceeeecccc
Q 013827 100 LEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGID 176 (436)
Q Consensus 100 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~vw~~~~~~~~~~~~~~~~~~ 176 (436)
+.+|.++...++...+ .......-|.-++| +|+.++|.++..+ |.|..|.++.......
T Consensus 18 I~v~~ld~~~g~l~~~---~~v~~~~nptyl~~-------~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-------- 79 (346)
T COG2706 18 IYVFNLDTKTGELSLL---QLVAELGNPTYLAV-------NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-------- 79 (346)
T ss_pred eEEEEEeCcccccchh---hhccccCCCceEEE-------CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE--------
Confidence 4666666555522222 22222233344555 8999999888654 7888888874311110
Q ss_pred hhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC-CCcEEEEeCCC-CeE---EEEEcccCCC------
Q 013827 177 EEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA-DKQVKIWDVAA-GKC---NLTLEHHTDK------ 245 (436)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~v~vwd~~~-~~~---~~~~~~~~~~------ 245 (436)
..........+-..++++++|+ +++++.. .|.|.++-+++ |.. +..+ .|.+.
T Consensus 80 ---------------~ln~~~~~g~~p~yvsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-~h~g~~p~~rQ 142 (346)
T COG2706 80 ---------------FLNRQTLPGSPPCYVSVDEDGR-FVFVANYHSGSVSVYPLQADGSLQPVVQVV-KHTGSGPHERQ 142 (346)
T ss_pred ---------------EeeccccCCCCCeEEEECCCCC-EEEEEEccCceEEEEEcccCCccccceeee-ecCCCCCCccc
Confidence 0000001122337899999975 6666654 57899999865 432 2222 24444
Q ss_pred ----eEEEEEcCCCCCEEEEEEC-CCcEEEEecCCCCCcc---ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 013827 246 ----VQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSG---FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 317 (436)
Q Consensus 246 ----v~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~ 317 (436)
+....+.|++ +++++... -..|.+|++..+.... ...........+.|+|+++...++.--+++|.+|...
T Consensus 143 ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~ 221 (346)
T COG2706 143 ESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYN 221 (346)
T ss_pred cCCccceeeeCCCC-CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEc
Confidence 8889999999 66666543 4579999998655432 1224567799999999997666666779999999988
Q ss_pred CCCCCCCCCCCcccEEEe------ccCCCeEEEEecCCCCCEEEEEeC-CCcEEEEECCC--CCceeEEeeCCCCCcEEE
Q 013827 318 TAKSDPDSTSQQSSFTLH------AHDKAVCTISYNPLVPNLLATGST-DKMVKLWDLSN--NQPSCIASRNPKAGAVFS 388 (436)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~p~~~~~l~~~~~-d~~i~iwd~~~--~~~~~~~~~~~~~~~v~~ 388 (436)
..... ...++.+. ........|..+|+| ++|.++.. ...|.+|.+.. ++...+.....+....+.
T Consensus 222 ~~~g~-----~~~lQ~i~tlP~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~ 295 (346)
T COG2706 222 PAVGK-----FEELQTIDTLPEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRD 295 (346)
T ss_pred CCCce-----EEEeeeeccCccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcc
Confidence 74110 01111111 123456789999999 78877655 45788887764 333333333444445789
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 389 VAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 389 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
+.|++.|++|+|+.-.+..|.+|.+....-
T Consensus 296 F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG 325 (346)
T COG2706 296 FNINPSGRFLIAANQKSDNITVFERDKETG 325 (346)
T ss_pred ceeCCCCCEEEEEccCCCcEEEEEEcCCCc
Confidence 999999998777666677899998865543
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.38 E-value=2.4e-10 Score=103.30 Aligned_cols=194 Identities=19% Similarity=0.244 Sum_probs=149.8
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEe------cC---
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW------NK--- 210 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~------~~--- 210 (436)
+|...++|....||.+++|+....+....+... . .-.+..++..| +|
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~---------------------~---~~s~t~~~~~w~L~~~~s~~k~ 57 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPI---------------------A---SLSGTCTYTKWGLSADYSPMKW 57 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccc---------------------h---hccCcceeEEEEEEeccchHHH
Confidence 566889999999999999999876543322110 0 11222333333 11
Q ss_pred ----------CCCcEEEEEeCCCcEEEEeCCCCeEEEEEc--ccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCC
Q 013827 211 ----------EFRNILASASADKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 278 (436)
Q Consensus 211 ----------~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 278 (436)
.+...++-|...|.|.+|++..++....+. .|.+.|.++.++.+- ..|.+++.|+.+..|+......
T Consensus 58 ~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~ 136 (541)
T KOG4547|consen 58 LSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVI 136 (541)
T ss_pred HhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEeccccee
Confidence 123478888999999999999999887774 689999999999887 7899999999999999999888
Q ss_pred ccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCC-----CCCE
Q 013827 279 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL-----VPNL 353 (436)
Q Consensus 279 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~~ 353 (436)
.......+..+.+++.+|++ ..+++++ +.|++||+.+. +.+..+.+|.++|.++.|--+ |..+
T Consensus 137 ~~~~~~~~~~~~sl~is~D~-~~l~~as--~~ik~~~~~~k---------evv~~ftgh~s~v~t~~f~~~~~g~~G~~v 204 (541)
T KOG4547|consen 137 IRIWKEQKPLVSSLCISPDG-KILLTAS--RQIKVLDIETK---------EVVITFTGHGSPVRTLSFTTLIDGIIGKYV 204 (541)
T ss_pred eeeeccCCCccceEEEcCCC-CEEEecc--ceEEEEEccCc---------eEEEEecCCCcceEEEEEEEecccccccee
Confidence 87777778889999999997 4666654 68999999998 779999999999999999876 5355
Q ss_pred EEEEeCCCcEEEEECCC
Q 013827 354 LATGSTDKMVKLWDLSN 370 (436)
Q Consensus 354 l~~~~~d~~i~iwd~~~ 370 (436)
|.+...+..+.+|-+..
T Consensus 205 Lssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 205 LSSAAAERGITVWVVEK 221 (541)
T ss_pred eeccccccceeEEEEEc
Confidence 55566677788886654
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.38 E-value=8.4e-11 Score=106.19 Aligned_cols=188 Identities=13% Similarity=0.193 Sum_probs=153.2
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEcc---cCCCeEEEEEc-------------------CCCCCEEEEEECCCcEEE
Q 013827 213 RNILASASADKQVKIWDVAAGKCNLTLEH---HTDKVQAVAWN-------------------HHSPQILLSGSFDRSVVM 270 (436)
Q Consensus 213 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~---~~~~v~~~~~~-------------------~~~~~~l~s~~~d~~i~~ 270 (436)
..++|....||.+++||...++....+.. -.+..++..|. ..+...++-|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 46899999999999999999887766632 23444555552 112256788889999999
Q ss_pred EecCCCCCccceE--eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecC
Q 013827 271 KDARISTHSGFKW--AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP 348 (436)
Q Consensus 271 wd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 348 (436)
|+...++...... .|.+.+.++.++.+- ..+.+++.|+.+..|+.... ..+......+..+.+++.+|
T Consensus 85 ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~---------~~~~~~~~~~~~~~sl~is~ 154 (541)
T KOG4547|consen 85 YSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEK---------VIIRIWKEQKPLVSSLCISP 154 (541)
T ss_pred EEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccc---------eeeeeeccCCCccceEEEcC
Confidence 9998887665444 578899999988865 58999999999999999987 56777788888899999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCC-----CCcEEEEEeCCCcEEEEeCCC
Q 013827 349 LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED-----SPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 349 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~s~~~dg~i~iwd~~~ 415 (436)
|+ ..+++++ +.|++||+++.+ .+..+.+|.++|++++|--+ |.|+|.+...+..+.+|-+..
T Consensus 155 D~-~~l~~as--~~ik~~~~~~ke--vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DG-KILLTAS--RQIKVLDIETKE--VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CC-CEEEecc--ceEEEEEccCce--EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 98 8888876 479999999988 68889999999999999887 788888888888899998765
No 259
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.37 E-value=2.5e-11 Score=116.23 Aligned_cols=187 Identities=20% Similarity=0.219 Sum_probs=149.9
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCccc-----ceeEEEecCCCCc
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD-----SVLGLAWNKEFRN 214 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~ 214 (436)
.-+...++.++.+..+.+||......+... .+.. ...-+.++++ .-
T Consensus 96 ~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i----------------------------~~~er~~l~~~~~~g~s~~-~~ 146 (967)
T KOG0974|consen 96 FEENKKIALVTSRNSLLIRDSKNSSVLSKI----------------------------QSDERCTLYSSLIIGDSAE-EL 146 (967)
T ss_pred hhhcceEEEEEcCceEEEEecccCceehhc----------------------------CCCceEEEEeEEEEeccCc-EE
Confidence 446778999999999999998765444321 1221 2222334555 46
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc-ceEeeeCCeeEEE
Q 013827 215 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLA 293 (436)
Q Consensus 215 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~i~~~~ 293 (436)
++++|+.-+.|.+|+....+....+.+|.+.|.++.|+.+| .++++.|.|.++++|++.+.+... ..++|...+..+.
T Consensus 147 ~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~ 225 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACC 225 (967)
T ss_pred EEEeccccccEEEEeccccCCcceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccCcccccccceeEEEE
Confidence 89999999999999997554444688999999999999999 999999999999999999988765 6789999999999
Q ss_pred eCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccC-CCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 013827 294 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 294 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~ 370 (436)
|.|. .+++++.|.+.++|+.... .+..+..|. ..+..++..+.. ..++|++.|+.+++|++..
T Consensus 226 ~~~n---~i~t~gedctcrvW~~~~~----------~l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 226 FLPN---RIITVGEDCTCRVWGVNGT----------QLEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eccc---eeEEeccceEEEEEecccc----------eehhhhhhhhcceeEEEEcCCc-eEEEeeccCcchhhhhhhc
Confidence 9994 7999999999999966543 233555564 568899998877 8999999999999999865
No 260
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.37 E-value=3.9e-12 Score=127.70 Aligned_cols=201 Identities=14% Similarity=0.177 Sum_probs=153.8
Q ss_pred CcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEc-ccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC
Q 013827 198 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS 276 (436)
Q Consensus 198 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 276 (436)
.+-..|.++.-+|.. .+.+||+.||.|++|....++.+..+. .-+..|+.+.|+.+| +.+..+..||.+.+|.+. +
T Consensus 2206 ~~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG-NKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred cccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC-CceeeeccCCceeecccC-C
Confidence 355678888889985 588899999999999998888777663 234889999999999 788889999999999987 3
Q ss_pred CCccceEeeeCCeeEEEeCCCCCcEEEEE---eCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCE
Q 013827 277 THSGFKWAVAADVESLAWDPHAEHSFVVS---LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL 353 (436)
Q Consensus 277 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 353 (436)
+....-..|......+.|-. .++++. ++++.+.+||.-... .....-..|.+.++++++.|.. .+
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~--------~~s~v~~~H~~gaT~l~~~P~~-ql 2350 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPP--------MNSLVHTCHDGGATVLAYAPKH-QL 2350 (2439)
T ss_pred cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCc--------ccceeeeecCCCceEEEEcCcc-eE
Confidence 33333445667777777765 345554 457899999976542 2222337899999999999988 89
Q ss_pred EEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccCC
Q 013827 354 LATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 426 (436)
Q Consensus 354 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (436)
|++|+.+|.|++||++..+. ...++. +. ... .+++|+..|.++||++..-..+.+...++
T Consensus 2351 lisggr~G~v~l~D~rqrql--~h~~~~---------~~-~~~-~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2351 LISGGRKGEVCLFDIRQRQL--RHTFQA---------LD-TRE-YFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred EEecCCcCcEEEeehHHHHH--HHHhhh---------hh-hhh-eeeccCcccceEEEEccccchhhcCchhh
Confidence 99999999999999998773 222221 44 334 58999999999999999887776654444
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.35 E-value=1.4e-08 Score=90.34 Aligned_cols=248 Identities=11% Similarity=0.088 Sum_probs=147.3
Q ss_pred CCCCcEEEEeeC----------CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEec
Q 013827 140 REKGNFMAVGSM----------EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN 209 (436)
Q Consensus 140 s~~~~~l~~g~~----------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 209 (436)
|||++.|.++.. +..|.|||..+.+....+..... +.. .....-..++++
T Consensus 54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~-----------------p~~---~~~~~~~~~~ls 113 (352)
T TIGR02658 54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG-----------------PRF---LVGTYPWMTSLT 113 (352)
T ss_pred CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC-----------------chh---hccCccceEEEC
Confidence 899999887765 78999999998877654432110 000 012234578999
Q ss_pred CCCCcEEEEEe-C-CCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE-e--
Q 013827 210 KEFRNILASAS-A-DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-A-- 284 (436)
Q Consensus 210 ~~~~~~l~s~~-~-dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~-- 284 (436)
|+|+ +|+... . +..|.+.|+.+++.+.++..- +...-...+++. . .+-+.||......+.+........ .
T Consensus 114 ~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~e~~-~--~~~~~Dg~~~~v~~d~~g~~~~~~~~vf 188 (352)
T TIGR02658 114 PDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTANDT-F--FMHCRDGSLAKVGYGTKGNPKIKPTEVF 188 (352)
T ss_pred CCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEecCCc-c--EEEeecCceEEEEecCCCceEEeeeeee
Confidence 9985 555544 3 789999999999999888642 222223333222 1 223345554443333222111000 0
Q ss_pred ee--CCe-eEEEeCC-CCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEe-------ccCCCeEEEEecCCCCCE
Q 013827 285 VA--ADV-ESLAWDP-HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-------AHDKAVCTISYNPLVPNL 353 (436)
Q Consensus 285 ~~--~~i-~~~~~~~-~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~p~~~~~ 353 (436)
+. .++ ..-.+.+ ++ .++++..+ |.|.+.|+........ .....+. ...+.+.-++++|++ +.
T Consensus 189 ~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~----~~~~~~~~~~~~~~wrP~g~q~ia~~~dg-~~ 261 (352)
T TIGR02658 189 HPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFL----PAIEAFTEAEKADGWRPGGWQQVAYHRAR-DR 261 (352)
T ss_pred cCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCcceec----ceeeeccccccccccCCCcceeEEEcCCC-CE
Confidence 00 000 0003455 55 56666665 9999999765432111 1111111 123444559999998 45
Q ss_pred EEE-Ee---------CCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCC-cEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 354 LAT-GS---------TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 354 l~~-~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
+++ .. ..+.|.++|..+.+. +..+.. ...+..++++||++ .++++...++.|.++|..+++.+.+.
T Consensus 262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kv--i~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 262 IYLLADQRAKWTHKTASRFLFVVDAKTGKR--LRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEecCCccccccCCCCEEEEEECCCCeE--EEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 544 31 225799999999874 333332 23789999999999 65556657899999999999988775
No 262
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.35 E-value=1.8e-09 Score=111.05 Aligned_cols=262 Identities=13% Similarity=0.149 Sum_probs=160.3
Q ss_pred CC-CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 140 RE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 140 s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
++ +++++++-..++.|++||.... .... .+..... ....... -.++-.....+++.+++..++++
T Consensus 576 d~~~g~lyVaDs~n~rI~v~d~~G~-~i~~---ig~~g~~-------G~~dG~~---~~a~f~~P~GIavd~~gn~LYVa 641 (1057)
T PLN02919 576 DLLNNRLFISDSNHNRIVVTDLDGN-FIVQ---IGSTGEE-------GLRDGSF---EDATFNRPQGLAYNAKKNLLYVA 641 (1057)
T ss_pred ECCCCeEEEEECCCCeEEEEeCCCC-EEEE---EccCCCc-------CCCCCch---hccccCCCcEEEEeCCCCEEEEE
Confidence 54 4667777778899999997532 1111 1100000 0000000 01123346789999986433444
Q ss_pred EeCCCcEEEEeCCCCeEEEEEccc-----------------CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccc
Q 013827 219 ASADKQVKIWDVAAGKCNLTLEHH-----------------TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF 281 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 281 (436)
-...+.|+++|+.++. +.++.+- -.....++++|++..++++.+.++.|++||..+......
T Consensus 642 Dt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~ 720 (1057)
T PLN02919 642 DTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVF 720 (1057)
T ss_pred eCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 4455789999987765 3333210 123467999995547788888899999999876532210
Q ss_pred e--------------EeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCC----CCCcccEEEe--------
Q 013827 282 K--------------WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS----TSQQSSFTLH-------- 335 (436)
Q Consensus 282 ~--------------~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~-------- 335 (436)
. ...-.....++++|++..++++...++.|++||+.++...... ........+-
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 0 0011345679999998767888888899999998865210000 0000000000
Q ss_pred ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEee-----------CCCCCcEEEEEEcCCCCcEEEEEeC
Q 013827 336 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR-----------NPKAGAVFSVAFSEDSPFVLAIGGS 404 (436)
Q Consensus 336 ~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~~l~s~~~ 404 (436)
..-.....++++++| .++++-..+++|++||..++....+... .+.......++++++|+ ++++-+.
T Consensus 801 ~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~ 878 (1057)
T PLN02919 801 VLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTN 878 (1057)
T ss_pred hhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECC
Confidence 011134688999998 7888888899999999987753322211 11122467899999998 7888889
Q ss_pred CCcEEEEeCCCCcc
Q 013827 405 KGKLEIWDTLSDAG 418 (436)
Q Consensus 405 dg~i~iwd~~~~~~ 418 (436)
++.|++||+.+++.
T Consensus 879 Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 879 NSLIRYLDLNKGEA 892 (1057)
T ss_pred CCEEEEEECCCCcc
Confidence 99999999998765
No 263
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.32 E-value=3.7e-10 Score=95.43 Aligned_cols=238 Identities=15% Similarity=0.208 Sum_probs=172.4
Q ss_pred CCCcEEEEeeCCCcEEEEeC-CCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 141 EKGNFMAVGSMEPAIEIWDL-DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 141 ~~~~~l~~g~~dg~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
|...-+.+.+.|.+++||-- +.++....+ ...-..+++++.+.++. ..|+.|
T Consensus 34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI--------------------------~~~mP~~~~~~~y~~e~-~~L~vg 86 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSI--------------------------YHYMPSPCSAMEYVSES-RRLYVG 86 (404)
T ss_pred cCCCCeEEccccceeeeEEeccccccCchh--------------------------hhhCCCCceEeeeeccc-eEEEEE
Confidence 44555889999999999953 333332221 11245679999999985 588999
Q ss_pred eCCCcEEEEeCC----CCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeC
Q 013827 220 SADKQVKIWDVA----AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD 295 (436)
Q Consensus 220 ~~dg~v~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~ 295 (436)
-..|++.-+.+. .....+....|...+..+-|+... ..+++.+.|..+.---.+.+.... .+......+...+.
T Consensus 87 ~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg-~Y~~~~~~t~~~~d 164 (404)
T KOG1409|consen 87 QDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLG-GYNFETPASALQFD 164 (404)
T ss_pred EecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCccc-ceEeeccCCCCcee
Confidence 999999888664 334455667799999999998877 789999999887654444444333 11222222222222
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCcee
Q 013827 296 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 375 (436)
Q Consensus 296 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~ 375 (436)
- .+..+|...|.|.+-.+.... ..++.++.+|...+.++.|.|.. .+|.+|..|..+.+||+...+. .
T Consensus 165 ~---~~~fvGd~~gqvt~lr~~~~~-------~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g-~ 232 (404)
T KOG1409|consen 165 A---LYAFVGDHSGQITMLKLEQNG-------CQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKG-T 232 (404)
T ss_pred e---EEEEecccccceEEEEEeecC-------CceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCCcc-e
Confidence 2 156667777777766655442 36788999999999999999977 8999999999999999987653 4
Q ss_pred EEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccc
Q 013827 376 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 420 (436)
Q Consensus 376 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (436)
.....+|...|..+...+--+ .+.+++.||.|.+|++.......
T Consensus 233 ~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~r~et 276 (404)
T KOG1409|consen 233 AYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVKRVET 276 (404)
T ss_pred eeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEeccceeecC
Confidence 456778888899888888777 58889999999999998665443
No 264
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.30 E-value=5.3e-09 Score=105.58 Aligned_cols=315 Identities=15% Similarity=0.196 Sum_probs=190.4
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEE--ecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEE
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYIL--EESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV 148 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 148 (436)
...+.|.++++-++...++++...| .|..+ +.... .....--..+.....|++| |||+.+||.
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~G-----di~~~~~~~~~~---~~~~E~VG~vd~GI~a~~W-------SPD~Ella~ 137 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASG-----DIILVREDPDPD---EDEIEIVGSVDSGILAASW-------SPDEELLAL 137 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCc-----eEEEEEccCCCC---CceeEEEEEEcCcEEEEEE-------CCCcCEEEE
Confidence 4457899999999999999988887 55555 22111 1111112234455678888 999999999
Q ss_pred eeCCCcEEEEeCCCCCCCcceeeecccchhh----hhhcccCC-------C-------ccc----ccccccCcccceeEE
Q 013827 149 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEK----KKKKSKKG-------K-------KSS----IKYKKGSHTDSVLGL 206 (436)
Q Consensus 149 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------~-------~~~----~~~~~~~h~~~v~~~ 206 (436)
.+.++++.+.+- +.+.+............. -.|.++.. | ... -...+. +.+.-..|
T Consensus 138 vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~I 215 (928)
T PF04762_consen 138 VTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRI 215 (928)
T ss_pred EeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEE
Confidence 999999988753 222222211111100000 00000100 0 000 011222 55567789
Q ss_pred EecCCCCcEEEEEeC---C---CcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEEC---CCcEEEEecCCCC
Q 013827 207 AWNKEFRNILASASA---D---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF---DRSVVMKDARIST 277 (436)
Q Consensus 207 ~~~~~~~~~l~s~~~---d---g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~ 277 (436)
+|-.|| .++|+.+. . ..+|||+-+ |....+-..-.+--.+++|.|.| +++++... ...|.+|.-+..+
T Consensus 216 SWRGDG-~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNGLr 292 (928)
T PF04762_consen 216 SWRGDG-EYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERNGLR 292 (928)
T ss_pred EECCCC-cEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecCCcE
Confidence 999998 48877664 2 479999954 65433333233334578999999 88887764 3456677654433
Q ss_pred CccceE---eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEecc-CCCeEEEEecCCCCCE
Q 013827 278 HSGFKW---AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNL 353 (436)
Q Consensus 278 ~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~ 353 (436)
.-.... .....+..+.|++++ .++++-..|. |.+|-..+. .+-..+.+... ...+..+.|+|..+..
T Consensus 293 hgeF~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NY-------HWYLKqei~~~~~~~~~~~~Wdpe~p~~ 363 (928)
T PF04762_consen 293 HGEFTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNY-------HWYLKQEIRFSSSESVNFVKWDPEKPLR 363 (928)
T ss_pred eeeEecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCC-------EEEEEEEEEccCCCCCCceEECCCCCCE
Confidence 332222 235678999999988 4677666554 999998876 23334444322 2334559999988788
Q ss_pred EEEEeCCCcEEEEEC----CCC----------------Cc--------------eeEEeeCCCCCcEEEEEEcCCCCcEE
Q 013827 354 LATGSTDKMVKLWDL----SNN----------------QP--------------SCIASRNPKAGAVFSVAFSEDSPFVL 399 (436)
Q Consensus 354 l~~~~~d~~i~iwd~----~~~----------------~~--------------~~~~~~~~~~~~v~~~~~~~~~~~~l 399 (436)
|...+.+|.+..+++ ..+ .. .....+. -..+|.+++|++++.. +
T Consensus 364 L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~-~ 441 (928)
T PF04762_consen 364 LHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSR-F 441 (928)
T ss_pred EEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCe-E
Confidence 888887777655543 111 00 0111111 2357999999999984 8
Q ss_pred EEEeCCCcEEEEeCCCC
Q 013827 400 AIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 400 ~s~~~dg~i~iwd~~~~ 416 (436)
++-..||.|.+|.....
T Consensus 442 avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 442 AVLTSDGSLSIYEWDLK 458 (928)
T ss_pred EEEECCCCEEEEEecCC
Confidence 88999999999986544
No 265
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.29 E-value=7e-08 Score=82.84 Aligned_cols=268 Identities=10% Similarity=0.192 Sum_probs=163.9
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEee
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 150 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 150 (436)
.+.+.++-|+|+|+++.|-++...++.+.+..+-++...+ .+.......++.-+.|- ++.++++++|+++.
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G---~Lt~ln~~~~~g~~p~y------vsvd~~g~~vf~An 107 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDG---RLTFLNRQTLPGSPPCY------VSVDEDGRFVFVAN 107 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCC---eEEEeeccccCCCCCeE------EEECCCCCEEEEEE
Confidence 4566788999999999998887776554455555555444 44444444444444332 22389999999998
Q ss_pred CC-CcEEEEeCCCCCCC-cceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC-CCcEEE
Q 013827 151 ME-PAIEIWDLDVIDEV-QPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA-DKQVKI 227 (436)
Q Consensus 151 ~d-g~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~v~v 227 (436)
.. |.|.++-++....+ ........... ..-.. .-..-+....+.|+++ +|++..- --.|.+
T Consensus 108 Y~~g~v~v~p~~~dG~l~~~v~~~~h~g~------------~p~~r---Q~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~ 171 (346)
T COG2706 108 YHSGSVSVYPLQADGSLQPVVQVVKHTGS------------GPHER---QESPHVHSANFTPDGR-YLVVPDLGTDRIFL 171 (346)
T ss_pred ccCceEEEEEcccCCccccceeeeecCCC------------CCCcc---ccCCccceeeeCCCCC-EEEEeecCCceEEE
Confidence 64 89999999663332 22111110000 00000 0111277888999974 6666643 236999
Q ss_pred EeCCCCeEEE----EEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCC-ccce---------EeeeCCeeEEE
Q 013827 228 WDVAAGKCNL----TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFK---------WAVAADVESLA 293 (436)
Q Consensus 228 wd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~---------~~~~~~i~~~~ 293 (436)
|++..++... .+ .......-|.|+|++.-..+..-.+++|.+|....... ...+ +.-......+.
T Consensus 172 y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh 250 (346)
T COG2706 172 YDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH 250 (346)
T ss_pred EEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence 9999775422 22 24556788999999954455666799999999877421 1111 12244577889
Q ss_pred eCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeC-CCcEEEEECCC
Q 013827 294 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKMVKLWDLSN 370 (436)
Q Consensus 294 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d~~i~iwd~~~ 370 (436)
.+++|..+.++--....|.+|.+...... ...+.....+........|+|.+ ++|+++.. +..|.+|.+..
T Consensus 251 is~dGrFLYasNRg~dsI~~f~V~~~~g~-----L~~~~~~~teg~~PR~F~i~~~g-~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 251 ISPDGRFLYASNRGHDSIAVFSVDPDGGK-----LELVGITPTEGQFPRDFNINPSG-RFLIAANQKSDNITVFERDK 322 (346)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEcCCCCE-----EEEEEEeccCCcCCccceeCCCC-CEEEEEccCCCcEEEEEEcC
Confidence 99998544444444557888887654210 11122223344556889999998 67776666 45688886653
No 266
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1e-08 Score=92.41 Aligned_cols=286 Identities=14% Similarity=0.156 Sum_probs=177.3
Q ss_pred ccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEee--
Q 013827 73 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS-- 150 (436)
Q Consensus 73 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-- 150 (436)
+......++|++|+++|....+ .+++++..... ..... ... -. +.+.|||-|++|.+--
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~~~------~v~i~~~~~~~---~~lt~-~~~--~~-------~~L~fSP~g~yL~T~e~~ 94 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSDNQ------VVKVFEIATLK---VVLCV-ELK--KT-------YDLLFSPKGNYLLTWEPW 94 (566)
T ss_pred CCcceeEEEcCCCcEEEEEcCC------eEEEEEccCCc---EEEEe-ccc--ee-------eeeeeccccccccccccc
Confidence 3347788999999999998765 77888776652 11111 111 11 2334488888887531
Q ss_pred ---C-----CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCC
Q 013827 151 ---M-----EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 222 (436)
Q Consensus 151 ---~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 222 (436)
. .-.+.+|++.++.....+. . ..+.. ++..|++|. .|+.--..
T Consensus 95 ~i~~~~~~~~pn~~v~~vet~~~~s~~q-------------------------~-k~Q~~-W~~qfs~dE--sl~arlv~ 145 (566)
T KOG2315|consen 95 AIYGPKNASNPNVLVYNVETGVQRSQIQ-------------------------K-KMQNG-WVPQFSIDE--SLAARLVS 145 (566)
T ss_pred ccccCCCCCCCceeeeeeccceehhhee-------------------------h-hhhcC-cccccccch--hhhhhhhc
Confidence 1 2457799998732222110 0 11222 689999984 35444455
Q ss_pred CcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCC-CCEEEE-----EECCCcEEEEecCCCCCcc---ceEeeeCCeeEEE
Q 013827 223 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHS-PQILLS-----GSFDRSVVMKDARISTHSG---FKWAVAADVESLA 293 (436)
Q Consensus 223 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s-----~~~d~~i~~wd~~~~~~~~---~~~~~~~~i~~~~ 293 (436)
+.+.+|++...+.+. -.-|...|+.+.++|.+ ...+++ .+.-+.+++|......... ...-....-..+.
T Consensus 146 nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~ 224 (566)
T KOG2315|consen 146 NEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMK 224 (566)
T ss_pred ceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEE
Confidence 789999988744322 22367889999999984 233433 2445679999876322211 1112234455678
Q ss_pred eCCCCCcEEEEEeC-----------CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEE-EeCCC
Q 013827 294 WDPHAEHSFVVSLE-----------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT-GSTDK 361 (436)
Q Consensus 294 ~~~~~~~~~~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~d~ 361 (436)
|++-|..+|+..+. +.+++++++... . ...--...++|.++.|+|++..+.++ |-.-.
T Consensus 225 WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~---------s-~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPA 294 (566)
T KOG2315|consen 225 WNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE---------S-VSVPLLKEGPVHDVTWSPSGREFAVVYGFMPA 294 (566)
T ss_pred eccCCceEEEEEEEeecCCCccccccceEEEEEecCc---------e-EEEecCCCCCceEEEECCCCCEEEEEEecccc
Confidence 88877655555432 245777777622 2 22222357999999999998434333 44577
Q ss_pred cEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeC--CCcEEEEeCCCCcccccc
Q 013827 362 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS--KGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 362 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~ 422 (436)
.+.|||++.. .++.+. .++-+++-|+|.|.+++++|-. .|.+-|||+.+.+++.+.
T Consensus 295 kvtifnlr~~---~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 295 KVTIFNLRGK---PVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred eEEEEcCCCC---EeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence 8999999865 344443 5678899999999965544332 488999999998877653
No 267
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.26 E-value=7.6e-09 Score=91.36 Aligned_cols=198 Identities=15% Similarity=0.157 Sum_probs=139.5
Q ss_pred eeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeec----ccccCcCcceeecccCCCCCC-CCCcEEEEeeCCCc
Q 013827 80 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHH----HIIIPAFPLCMAWLDCPLKDR-EKGNFMAVGSMEPA 154 (436)
Q Consensus 80 ~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~s-~~~~~l~~g~~dg~ 154 (436)
..+.||+.++..... .||+|+..++....+-..- ....+.+...+.++. .|+ .+|.++|..+ -|.
T Consensus 273 ~~nsDGkrIvFq~~G------dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyle---dfa~~~Gd~ia~VS-RGk 342 (668)
T COG4946 273 NANSDGKRIVFQNAG------DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLE---DFAVVNGDYIALVS-RGK 342 (668)
T ss_pred ccCCCCcEEEEecCC------cEEEeCCCcCcceeeecCCccccccccccccCHHHhhh---hhccCCCcEEEEEe-cCc
Confidence 345678888776432 8999999887544443331 111222222222221 122 3688888887 467
Q ss_pred EEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCC-cEEEEeCCCC
Q 013827 155 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK-QVKIWDVAAG 233 (436)
Q Consensus 155 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg-~v~vwd~~~~ 233 (436)
..|.+...+-.++ -+|...|.-..+.-++ .-++.|..|| .+-|+|..++
T Consensus 343 aFi~~~~~~~~iq-----------------------------v~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~ 392 (668)
T COG4946 343 AFIMRPWDGYSIQ-----------------------------VGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGG 392 (668)
T ss_pred EEEECCCCCeeEE-----------------------------cCCCCceEEEEEccCC-cceEEeccCCceEEEEecCCc
Confidence 7776654332222 1677788888888885 4888999999 8999999888
Q ss_pred eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCC----
Q 013827 234 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG---- 309 (436)
Q Consensus 234 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg---- 309 (436)
+. +.+...-+.|.++..+++| ..++.+.....|.+.|+.++.....-....+-|+.++|+|++ .+++-+--+|
T Consensus 393 e~-kr~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~ns-r~iAYafP~gy~tq 469 (668)
T COG4946 393 EV-KRIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQ 469 (668)
T ss_pred eE-EEeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCc-eeEEEecCcceeee
Confidence 74 4455567889999999999 889999988999999999988766555666779999999987 6788776554
Q ss_pred cEEEEeCCCCC
Q 013827 310 TIKGFDIRTAK 320 (436)
Q Consensus 310 ~i~i~d~~~~~ 320 (436)
.|++||+..++
T Consensus 470 ~Iklydm~~~K 480 (668)
T COG4946 470 SIKLYDMDGGK 480 (668)
T ss_pred eEEEEecCCCe
Confidence 58888887754
No 268
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=5.2e-09 Score=94.04 Aligned_cols=285 Identities=13% Similarity=0.183 Sum_probs=166.8
Q ss_pred ccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCC----
Q 013827 77 EDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME---- 152 (436)
Q Consensus 77 ~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---- 152 (436)
+-+.|||-|.+|++-...| |.+|....-.....+.|. .+++ +.|||..+||+|-+..
T Consensus 214 tyv~wSP~GTYL~t~Hk~G------I~lWGG~~f~r~~RF~Hp---------~Vq~----idfSP~EkYLVT~s~~p~~~ 274 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG------IALWGGESFDRIQRFYHP---------GVQF----IDFSPNEKYLVTYSPEPIIV 274 (698)
T ss_pred eeEEecCCceEEEEEeccc------eeeecCccHHHHHhccCC---------Ccee----eecCCccceEEEecCCcccc
Confidence 5689999999999987664 555543332111222222 1233 2449999999987632
Q ss_pred -------CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcE
Q 013827 153 -------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV 225 (436)
Q Consensus 153 -------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 225 (436)
..++|||+.++........+ .+....-.-+.||.|+ +++|.-.. .+|
T Consensus 275 ~~~d~e~~~l~IWDI~tG~lkrsF~~~------------------------~~~~~~WP~frWS~Dd-Ky~Arm~~-~si 328 (698)
T KOG2314|consen 275 EEDDNEGQQLIIWDIATGLLKRSFPVI------------------------KSPYLKWPIFRWSHDD-KYFARMTG-NSI 328 (698)
T ss_pred CcccCCCceEEEEEccccchhcceecc------------------------CCCccccceEEeccCC-ceeEEecc-ceE
Confidence 57899999998877654332 1111222346799996 58877666 579
Q ss_pred EEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECC-----CcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCc
Q 013827 226 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 300 (436)
Q Consensus 226 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 300 (436)
.||+..+...+..-.-.-..|....|+|.+ ++||-=... ..+.+-.+.+...+....-+.-.-..+.|..+|..
T Consensus 329 sIyEtpsf~lld~Kslki~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy 407 (698)
T KOG2314|consen 329 SIYETPSFMLLDKKSLKISGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY 407 (698)
T ss_pred EEEecCceeeecccccCCccccCcccCCCc-ceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence 999977644332222234678889999997 666542211 23344444333333222222222233456565543
Q ss_pred EEEEE---------eCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeC--CCcEEEEECC
Q 013827 301 SFVVS---------LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLS 369 (436)
Q Consensus 301 ~~~~~---------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--d~~i~iwd~~ 369 (436)
+.+-. +.-..+.|+.++... .++..+. -...|...+|-|.|.++.+..+. ..++.+|.+.
T Consensus 408 LcvkvdR~tK~~~~g~f~n~eIfrireKd--------Ipve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e 478 (698)
T KOG2314|consen 408 LCVKVDRHTKSKVKGQFSNLEIFRIREKD--------IPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVE 478 (698)
T ss_pred EEEEEEeeccccccceEeeEEEEEeeccC--------CCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEee
Confidence 32221 112246677777652 3333332 45678899999999544444433 3568888887
Q ss_pred CC--CceeEEeeCCCCCcEEEEEEcCCCCcEEEEE--eCCCcEEEEeCCCCcc
Q 013827 370 NN--QPSCIASRNPKAGAVFSVAFSEDSPFVLAIG--GSKGKLEIWDTLSDAG 418 (436)
Q Consensus 370 ~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~ 418 (436)
+. ++..+..+.. ...+.+.|+|.|+++++.+ +..|.+.++|+.-...
T Consensus 479 ~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~ 529 (698)
T KOG2314|consen 479 TNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL 529 (698)
T ss_pred cCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhh
Confidence 42 2223333332 4678899999999755443 3478999999985333
No 269
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.23 E-value=6.5e-11 Score=119.25 Aligned_cols=181 Identities=18% Similarity=0.284 Sum_probs=143.2
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
+|...+.++|+.||.|++|....++.+...... + ...|+.+.|+.+| +.+..+
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-------------------------g-~s~vtr~~f~~qG-nk~~i~ 2269 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-------------------------G-NSRVTRSRFNHQG-NKFGIV 2269 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeecc-------------------------C-cchhhhhhhcccC-Cceeee
Confidence 788889999999999999999877766554332 2 3889999999997 578888
Q ss_pred eCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEE---CCCcEEEEecCCCCCc-cceEeeeCCeeEEEeC
Q 013827 220 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS---FDRSVVMKDARISTHS-GFKWAVAADVESLAWD 295 (436)
Q Consensus 220 ~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~~-~~~~~~~~~i~~~~~~ 295 (436)
..||.+.+|.+. .++....+.|......+.|-. ..+++++ .++.+.+||....... .....|.+.++++++.
T Consensus 2270 d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~ 2345 (2439)
T KOG1064|consen 2270 DGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYA 2345 (2439)
T ss_pred ccCCceeecccC-CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEc
Confidence 899999999987 566677788998888888875 3456554 4678999997654332 2236789999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 013827 296 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 296 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
|.. +++++|+.+|.|++||++.. +.+..++. +. . ..++++|+..|.++||++....
T Consensus 2346 P~~-qllisggr~G~v~l~D~rqr---------ql~h~~~~---------~~-~-~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2346 PKH-QLLISGGRKGEVCLFDIRQR---------QLRHTFQA---------LD-T-REYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred Ccc-eEEEecCCcCcEEEeehHHH---------HHHHHhhh---------hh-h-hheeeccCcccceEEEEccccc
Confidence 976 79999999999999999975 44444332 33 2 3799999999999999998765
No 270
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=2.3e-09 Score=99.11 Aligned_cols=249 Identities=12% Similarity=0.239 Sum_probs=154.0
Q ss_pred ceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEE
Q 013827 128 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 207 (436)
Q Consensus 128 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 207 (436)
.|.+| +....++|+|+.||.++|..+.+.........+ ...........+.||...|.-+.
T Consensus 18 ~c~~W-------Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~gl------------aa~snLsmNQtLeGH~~sV~vvT 78 (1189)
T KOG2041|consen 18 HCAEW-------NKESGYIACGGADGLLKVLKLGTDTTDLNKSGL------------AAASNLSMNQTLEGHNASVMVVT 78 (1189)
T ss_pred EEEEE-------cccCCeEEeccccceeEEEEccccCCccccccc------------ccccccchhhhhccCcceEEEEE
Confidence 48888 788999999999999999988765433221111 11233556677899999999999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEE--cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE--
Q 013827 208 WNKEFRNILASASADKQVKIWDVAAGKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-- 283 (436)
Q Consensus 208 ~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-- 283 (436)
|+... +.|-+...+|.|.||-+-.+.....+ ....+.|.+++|+.+| ..+...-.||.|.+=.+...+.-....
T Consensus 79 WNe~~-QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgKeLkg 156 (1189)
T KOG2041|consen 79 WNENN-QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGKELKG 156 (1189)
T ss_pred ecccc-ccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecchhcch
Confidence 99984 68999999999999999877654333 2356788999999999 777777777777554333211100000
Q ss_pred --------------------------------------------------eeeCCeeEEEeC--------CCCCcEEEEE
Q 013827 284 --------------------------------------------------AVAADVESLAWD--------PHAEHSFVVS 305 (436)
Q Consensus 284 --------------------------------------------------~~~~~i~~~~~~--------~~~~~~~~~~ 305 (436)
..+..+..+.|. |+. -.++++
T Consensus 157 ~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr-P~lavc 235 (1189)
T KOG2041|consen 157 QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR-PRLAVC 235 (1189)
T ss_pred heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC-CEEEEE
Confidence 001112333332 122 245666
Q ss_pred eCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCC---------cEEEEECCCCCceeE
Q 013827 306 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK---------MVKLWDLSNNQPSCI 376 (436)
Q Consensus 306 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~---------~i~iwd~~~~~~~~~ 376 (436)
..+|.+.|..-.+.. .++ +....-.+..+.|+++| .+|++++.+. .|.+|..-. + .+
T Consensus 236 y~nGr~QiMR~eND~--------~Pv--v~dtgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~G-~--i~ 301 (1189)
T KOG2041|consen 236 YANGRMQIMRSENDP--------EPV--VVDTGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPYG-H--IV 301 (1189)
T ss_pred EcCceehhhhhcCCC--------CCe--EEecccEeecceecCCC-cEEEEccCcccccCccccceEEEeccch-h--he
Confidence 666666554433321 222 11223567889999999 8999888653 344443322 2 23
Q ss_pred EeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 377 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 377 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
.++......|++++|-..|- .+| -..|+.|++=+++
T Consensus 302 gtlkvpg~~It~lsWEg~gL-riA-~AvdsfiyfanIR 337 (1189)
T KOG2041|consen 302 GTLKVPGSCITGLSWEGTGL-RIA-IAVDSFIYFANIR 337 (1189)
T ss_pred EEEecCCceeeeeEEcCCce-EEE-EEecceEEEEeec
Confidence 33444455789999987764 233 3345666554443
No 271
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.23 E-value=4.7e-10 Score=93.57 Aligned_cols=246 Identities=18% Similarity=0.269 Sum_probs=160.2
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCc------------ccceeEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH------------TDSVLGLA 207 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~~~~ 207 (436)
...|.||++|...|.|.++.-.....-+ .+....+++| ...|..+.
T Consensus 35 d~tg~YlatGDkgGRVvlfer~~s~~ce----------------------ykf~teFQshe~EFDYLkSleieEKin~I~ 92 (460)
T COG5170 35 DETGLYLATGDKGGRVVLFEREKSYGCE----------------------YKFFTEFQSHELEFDYLKSLEIEEKINAIE 92 (460)
T ss_pred ccccceEeecCCCceEEEeecccccccc----------------------hhhhhhhcccccchhhhhhccHHHHhhhee
Confidence 6779999999999999999865322111 1112223333 34688888
Q ss_pred ecCC-CCcEEEEEeCCCcEEEEeCCCCe-------------------------------------EE-----EEE-cccC
Q 013827 208 WNKE-FRNILASASADKQVKIWDVAAGK-------------------------------------CN-----LTL-EHHT 243 (436)
Q Consensus 208 ~~~~-~~~~l~s~~~dg~v~vwd~~~~~-------------------------------------~~-----~~~-~~~~ 243 (436)
|..+ ++..++..+.|.+|++|.+.... .+ +.. ..|.
T Consensus 93 w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~ 172 (460)
T COG5170 93 WFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHP 172 (460)
T ss_pred eecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccce
Confidence 8654 45577778889999999875320 00 011 3477
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE--------eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEe
Q 013827 244 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFD 315 (436)
Q Consensus 244 ~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d 315 (436)
..|.++.++.+. ..+++ ..|-.|.+|++.-....-... ....-|++..|+|..-+.+..++..|.|++-|
T Consensus 173 yhiNSiS~NsD~-et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~D 250 (460)
T COG5170 173 YHINSISFNSDK-ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLND 250 (460)
T ss_pred eEeeeeeecCch-heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehh
Confidence 778899999887 55554 457789999987544322111 12234889999998878899999999999999
Q ss_pred CCCCCCCCCCC-------CCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCC-----
Q 013827 316 IRTAKSDPDST-------SQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA----- 383 (436)
Q Consensus 316 ~~~~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----- 383 (436)
+|......... ......-+..-...|..+.|+++| +++++-+. -+|++||++..+. ++.+.+-|.
T Consensus 251 lRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRdy-ltvkiwDvnm~k~-pikTi~~h~~l~~~ 327 (460)
T COG5170 251 LRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRDY-LTVKIWDVNMAKN-PIKTIPMHCDLMDE 327 (460)
T ss_pred hhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEecc-ceEEEEecccccC-CceeechHHHHHHH
Confidence 99543211100 000011122234678899999998 78876543 5899999987653 444443332
Q ss_pred -------CcE---EEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 013827 384 -------GAV---FSVAFSEDSPFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 384 -------~~v---~~~~~~~~~~~~l~s~~~dg~i~iwd~ 413 (436)
..| ..+.|+.|... +.+|+..+..-+|-+
T Consensus 328 l~d~YEnDaifdkFeisfSgd~~~-v~sgsy~NNfgiyp~ 366 (460)
T COG5170 328 LNDVYENDAIFDKFEISFSGDDKH-VLSGSYSNNFGIYPT 366 (460)
T ss_pred HHhhhhccceeeeEEEEecCCccc-ccccccccceeeecc
Confidence 123 35788988886 778888888877764
No 272
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.21 E-value=4.9e-10 Score=94.68 Aligned_cols=211 Identities=13% Similarity=0.235 Sum_probs=141.8
Q ss_pred cccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCe-----EEEEEccc------------CCCeEEEEEcCCC-CCEEE
Q 013827 199 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-----CNLTLEHH------------TDKVQAVAWNHHS-PQILL 260 (436)
Q Consensus 199 h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~-----~~~~~~~~------------~~~v~~~~~~~~~-~~~l~ 260 (436)
..+-|.++.|...| .+||+|..+|.|.++.-+... ....++.| ...|..+.|.+++ ...++
T Consensus 24 eadiis~vef~~~G-e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 24 EADIISAVEFDHYG-ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hhcceeeEEeeccc-ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 45678999999997 599999999999999754322 22333333 3568889998765 24677
Q ss_pred EEECCCcEEEEecCCCCCcc------------------------------------ceEeeeCCeeEEEeCCCCCcEEEE
Q 013827 261 SGSFDRSVVMKDARISTHSG------------------------------------FKWAVAADVESLAWDPHAEHSFVV 304 (436)
Q Consensus 261 s~~~d~~i~~wd~~~~~~~~------------------------------------~~~~~~~~i~~~~~~~~~~~~~~~ 304 (436)
..+.|.+|++|.++...... ....|...|+++.++.+.+ .+.
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E--t~l 180 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE--TFL 180 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc--eEe
Confidence 78889999999886432111 0012445688899988764 444
Q ss_pred EeCCCcEEEEeCCCCCCCCCCCCCcccEEEecc-----CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc----ee
Q 013827 305 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-----DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----SC 375 (436)
Q Consensus 305 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~----~~ 375 (436)
+.+|=.|.+|.+.-...... +..++.+ ..-|++..|+|..-++++-.+..|+|++-|++.... ..
T Consensus 181 SADdLRINLWnlei~d~sFn------IVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 181 SADDLRINLWNLEIIDQSFN------IVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred eccceeeeeccccccCCcee------EEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence 56788999999876633221 2223333 245889999998778899999999999999985321 01
Q ss_pred EEee----------CCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC-CCcccc
Q 013827 376 IASR----------NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL-SDAGIS 420 (436)
Q Consensus 376 ~~~~----------~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~ 420 (436)
++.. .+-...|..+.|+++|+| +++-+ =-+|++||+. ..+.+.
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGry-ilsRD-yltvk~wD~nme~~pv~ 308 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRY-ILSRD-YLTVKLWDLNMEAKPVE 308 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcE-EEEec-cceeEEEeccccCCcce
Confidence 1111 111235888999999997 55332 2689999994 444443
No 273
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.20 E-value=7.8e-09 Score=84.68 Aligned_cols=241 Identities=14% Similarity=0.076 Sum_probs=153.2
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 221 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 221 (436)
...+||.|+..|...+|...+.+..... -..|...|+-+.=..+...-+..++.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~--------------------------cd~snn~v~~~~r~cd~~~~~~i~sn 136 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQ--------------------------CDVSNNDVTLVKRYCDLKFPLNIASN 136 (344)
T ss_pred cccEEEeccccceeeeecccCcccceee--------------------------ecccccchhhhhhhcccccceeeccC
Confidence 4567999999999999998765432211 11222222221111121234667888
Q ss_pred CCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccce---EeeeCCeeEEEeCCCC
Q 013827 222 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK---WAVAADVESLAWDPHA 298 (436)
Q Consensus 222 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~~~~~i~~~~~~~~~ 298 (436)
|.++++.+++.+..........-.+.++++++++ .++++.+....|..|.+......... ......-.+..|+...
T Consensus 137 dht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~ 215 (344)
T KOG4532|consen 137 DHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND 215 (344)
T ss_pred CcceeEEEEecCcccceeeccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc
Confidence 9999999887554332222112348899999999 89999999999999998765443222 2234556778888866
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCC-EEEEEeCCCcEEEEECCCCCceeEE
Q 013827 299 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN-LLATGSTDKMVKLWDLSNNQPSCIA 377 (436)
Q Consensus 299 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~ 377 (436)
..+|++..||++.|||+|....+.. ....+-..|.+.+..+.|++-|+. +|...-.-+.+.+-|+++.....+.
T Consensus 216 -~~FAv~~Qdg~~~I~DVR~~~tpm~----~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 216 -LQFAVVFQDGTCAIYDVRNMATPMA----EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred -ceEEEEecCCcEEEEEecccccchh----hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence 5899999999999999998743221 112233458899999999986643 3444444678999999987643333
Q ss_pred eeCC-----C-CCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 378 SRNP-----K-AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 378 ~~~~-----~-~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
.... | ...|..-.|+.++.. +.+...+ .+.=|++.+.
T Consensus 291 ~i~~d~~~~~~tq~ifgt~f~~~n~s-~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 291 VIPDDVERKHNTQHIFGTNFNNENES-NDVKNEL-QGAEYNILSR 333 (344)
T ss_pred ecCccccccccccccccccccCCCcc-cccccch-hhheeecccc
Confidence 2222 2 234778888888775 3333332 3445555443
No 274
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.16 E-value=4.4e-10 Score=91.43 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=102.3
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEE-EEEcccCCCeEEEEEcCCCCCEEEEEE-----CCCcEEEEecCCCCCccceEeeeC
Q 013827 214 NILASASADKQVKIWDVAAGKCN-LTLEHHTDKVQAVAWNHHSPQILLSGS-----FDRSVVMKDARISTHSGFKWAVAA 287 (436)
Q Consensus 214 ~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~-----~d~~i~~wd~~~~~~~~~~~~~~~ 287 (436)
+-++++..||.+.+.+.+.-..+ ..+..-...-.+.+....+ +++.++. .-+..+.|+++..+..........
T Consensus 102 t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~ 180 (319)
T KOG4714|consen 102 NRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHG-NSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALD 180 (319)
T ss_pred CceEecCCCceEEEEechHHHhhhhhcccccccccccceeecc-cEEecCCcceEeeccceeeecccccccccccccccc
Confidence 46999999999999987652111 1111111111122223333 3333322 223456666665444332333344
Q ss_pred CeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 013827 288 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 367 (436)
Q Consensus 288 ~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd 367 (436)
.+.+++-+|...+++++|+.||.+.+||.+.. ..+...+..|+.+++.+-|+|..+..|+++++||.+..||
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~--------~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNV--------AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccc--------cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 49999999988889999999999999999987 3556678899999999999999889999999999999999
Q ss_pred CCC
Q 013827 368 LSN 370 (436)
Q Consensus 368 ~~~ 370 (436)
..+
T Consensus 253 as~ 255 (319)
T KOG4714|consen 253 AST 255 (319)
T ss_pred CCC
Confidence 875
No 275
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.16 E-value=1.7e-08 Score=82.75 Aligned_cols=207 Identities=13% Similarity=0.001 Sum_probs=140.6
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEE-EEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEE
Q 013827 214 NILASASADKQVKIWDVAAGKCN-LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 292 (436)
Q Consensus 214 ~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~ 292 (436)
.+||.|+..|...+|...+.+.. .....|...|+-+.=.-+...-+..++.|.++++.++.............-...++
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 38999999999999999866532 33344544443322222222446778888888888877554433222222448899
Q ss_pred EeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccE-EEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 013827 293 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF-TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 371 (436)
Q Consensus 293 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~ 371 (436)
++++++ .++++.++...|-.|.+..... .... ........-.+..|+... ..+|++..||++.|||++..
T Consensus 165 ~~snd~-~~~~~Vgds~~Vf~y~id~~se-------y~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 165 HYSNDP-SWGSSVGDSRRVFRYAIDDESE-------YIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred EEcCCC-ceEEEecCCCcceEEEeCCccc-------eeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEEEeccc
Confidence 999987 6888889999999999877631 1122 223333445678898877 89999999999999999875
Q ss_pred Cce---eEEeeCCCCCcEEEEEEcCCCCc-EEEEEeCCCcEEEEeCCCCccccccccCCCCC
Q 013827 372 QPS---CIASRNPKAGAVFSVAFSEDSPF-VLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP 429 (436)
Q Consensus 372 ~~~---~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 429 (436)
... .....+.|.+.++.+.|++.|.. +|...-.-+.+.+-|++++...+...-..+..
T Consensus 236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~ 297 (344)
T KOG4532|consen 236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVE 297 (344)
T ss_pred ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccc
Confidence 421 22234568999999999986642 34445556789999999988776655444443
No 276
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.10 E-value=1.7e-07 Score=96.61 Aligned_cols=168 Identities=9% Similarity=0.154 Sum_probs=111.7
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEccc---------------CCCeEEEEEcCCCCCEEEEEECCCc
Q 013827 203 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH---------------TDKVQAVAWNHHSPQILLSGSFDRS 267 (436)
Q Consensus 203 v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~l~s~~~d~~ 267 (436)
-..++++|++..++++.+.++.|++||..++... .+.+. -.....|+++|++..++++-+.++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 4589999955567778888899999998876542 22111 1235679999998447777778899
Q ss_pred EEEEecCCCCCccce------------Ee---------eeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCC
Q 013827 268 VVMKDARISTHSGFK------------WA---------VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST 326 (436)
Q Consensus 268 i~~wd~~~~~~~~~~------------~~---------~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~ 326 (436)
|++||+.+....... .+ .-.....++++++| .++++-..++.|++||..+........
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG 842 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAG 842 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEec
Confidence 999998865421100 00 01134688999987 588888899999999987652100000
Q ss_pred CCcc----cEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc
Q 013827 327 SQQS----SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 373 (436)
Q Consensus 327 ~~~~----~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~ 373 (436)
.... -....+.-.....++++++| +++++-+.++.|++||+.+++.
T Consensus 843 ~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 843 TGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECCCCEEEEEECCCCcc
Confidence 0000 00011122356789999998 7888888899999999988753
No 277
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.09 E-value=3.8e-07 Score=76.08 Aligned_cols=196 Identities=14% Similarity=0.201 Sum_probs=117.4
Q ss_pred cceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcc-------cCCCeEEEEEcCCC-----CCEEEEEECCCcE
Q 013827 201 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-------HTDKVQAVAWNHHS-----PQILLSGSFDRSV 268 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~-----~~~l~s~~~d~~i 268 (436)
..-..++|+||+ .+||.+...|+|+++|+.... +..+.. ....|..|.|.+.. ...|++-..+|.+
T Consensus 44 PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 44 PQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred chheEEEECCCC-cEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence 346789999996 699999999999999997543 233321 23566677675432 2357777888888
Q ss_pred EEEecCCCC--CccceE------eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCC
Q 013827 269 VMKDARIST--HSGFKW------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA 340 (436)
Q Consensus 269 ~~wd~~~~~--~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (436)
+-|-+..+. .-.... ..+..|.++.++|.. +++++|+.... ..+ .-.+....
T Consensus 122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~------~~~-------------~s~a~~~G 181 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQN------QDG-------------MSKASSCG 181 (282)
T ss_pred eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCC------CCc-------------cccccccC
Confidence 877764322 211111 135689999999976 56666654322 000 00112223
Q ss_pred eEEEEecCCCCCEEEEEeC-CCc------EEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 013827 341 VCTISYNPLVPNLLATGST-DKM------VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 341 v~~~~~~p~~~~~l~~~~~-d~~------i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 413 (436)
+++-..-.+.|.+..+.+. |+. -.+|.+-+.+ ...........|..|..||||. +||+...+|.|.+|++
T Consensus 182 LtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~--~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 182 LTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK--FFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEI 258 (282)
T ss_pred ceEEEEcCCCCcEEEccccCccccccccccceeecccee--eeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEec
Confidence 3333333333333332222 211 2334433222 1111123456899999999999 6999999999999999
Q ss_pred CCCccccc
Q 013827 414 LSDAGISN 421 (436)
Q Consensus 414 ~~~~~~~~ 421 (436)
.+-...++
T Consensus 259 PsL~~~~~ 266 (282)
T PF15492_consen 259 PSLRLQRS 266 (282)
T ss_pred Ccchhhcc
Confidence 98776654
No 278
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=1.2e-07 Score=88.15 Aligned_cols=195 Identities=13% Similarity=0.049 Sum_probs=119.1
Q ss_pred ceeEEEecCCCCcEEEEEeC---CCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCC--cEEEEecCCC
Q 013827 202 SVLGLAWNKEFRNILASASA---DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARIS 276 (436)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~ 276 (436)
.+....|+|+|...++..+. +..|.++|+.+++...... ..+......|+|+|..++++.+.++ .|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 67789999998643554333 3469999998887544433 4555667889999955555655554 5777787666
Q ss_pred CCccceEeeeCCeeEEEeCCCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEE
Q 013827 277 THSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 354 (436)
Q Consensus 277 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 354 (436)
.... ............|+|+|..++++....+ .|.++|+.+++ . ..+...... ...|+|+| ..|
T Consensus 268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~---------~-~rlt~~g~~--~~~~SPDG-~~I 333 (419)
T PRK04043 268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS---------V-EQVVFHGKN--NSSVSTYK-NYI 333 (419)
T ss_pred cEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC---------e-EeCccCCCc--CceECCCC-CEE
Confidence 5332 2222333445689999987777776555 46666776552 1 111111111 24899999 555
Q ss_pred EEEeCC---------CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCc--EEEEeCCC
Q 013827 355 ATGSTD---------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDTLS 415 (436)
Q Consensus 355 ~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~ 415 (436)
+..+.. ..|.+.|+.+++...+.. . +......|+|||+.++.+....+. +.+.++..
T Consensus 334 a~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~---~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 334 VYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA---N-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EEEEcCCCcccCCCCcEEEEEECCCCCeEECCC---C-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 544432 368888988876433222 1 122357899999976555544444 55556544
No 279
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.09 E-value=5.6e-07 Score=75.10 Aligned_cols=241 Identities=14% Similarity=0.167 Sum_probs=128.9
Q ss_pred ceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEE
Q 013827 79 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 158 (436)
Q Consensus 79 ~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 158 (436)
++.+++|++||+....- ++|.--..+-. .....-+.+-...| +| ..++||||+.+||.+...|+|+++
T Consensus 3 ~~~~~~Gk~lAi~qd~~----iEiRsa~Ddf~---si~~kcqVpkD~~P---QW--Rkl~WSpD~tlLa~a~S~G~i~vf 70 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQC----IEIRSAKDDFS---SIIGKCQVPKDPNP---QW--RKLAWSPDCTLLAYAESTGTIRVF 70 (282)
T ss_pred eeecCCCcEEEEEeccE----EEEEeccCCch---heeEEEecCCCCCc---hh--eEEEECCCCcEEEEEcCCCeEEEE
Confidence 57789999999986431 34432222111 22111122222221 12 123349999999999999999999
Q ss_pred eCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCC-----CcEEEEEeCCCcEEEEeCCCC
Q 013827 159 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-----RNILASASADKQVKIWDVAAG 233 (436)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----~~~l~s~~~dg~v~vwd~~~~ 233 (436)
|+...+.. .+. .. . .....-...|..+.|.+.. ...|+.-..+|.++=|-+..+
T Consensus 71 dl~g~~lf-~I~--p~-------------~-----~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~g 129 (282)
T PF15492_consen 71 DLMGSELF-VIP--PA-------------M-----SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVG 129 (282)
T ss_pred ecccceeE-EcC--cc-------------c-----ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcc
Confidence 98753321 110 00 0 0011235677777776532 125666777888877765321
Q ss_pred -----eEEEEE---cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEE-
Q 013827 234 -----KCNLTL---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV- 304 (436)
Q Consensus 234 -----~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~- 304 (436)
+....+ ..+...|.++.++|.. ++|++|+.... +.. . .......+++-..-.+.+.+..+
T Consensus 130 t~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~------~~~--~--s~a~~~GLtaWRiL~~~Pyyk~v~ 198 (282)
T PF15492_consen 130 TNQGYQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQN------QDG--M--SKASSCGLTAWRILSDSPYYKQVT 198 (282)
T ss_pred cCCcceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCC------CCc--c--ccccccCceEEEEcCCCCcEEEcc
Confidence 223333 2346789999999998 66666654322 000 0 00111222222222222222222
Q ss_pred EeCCCc------EEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc
Q 013827 305 SLEDGT------IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 373 (436)
Q Consensus 305 ~~~dg~------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~ 373 (436)
...|+. ..+|.+-+. ............|..|..+|+| .+||+...+|.|.+|++.+-..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~---------~~fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 199 SSEDDITASSKRRGLLRIPSF---------KFFSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred ccCccccccccccceeeccce---------eeeeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchh
Confidence 222211 122222211 0001112245679999999999 9999999999999999988654
No 280
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.06 E-value=3.3e-09 Score=91.67 Aligned_cols=161 Identities=14% Similarity=0.148 Sum_probs=107.8
Q ss_pred cccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEE---eeCC
Q 013827 76 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV---GSME 152 (436)
Q Consensus 76 v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~---g~~d 152 (436)
+..+..+|+++++|++..+.. ..+..|..... .........++..+..+.+ -.+...... .+..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~---~~~f~~~~~~~---~~kl~~~~~v~~~~~ai~~-------~~~~~sv~v~dkagD~ 131 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQ---RAVFDYRENPK---GAKLLDVSCVPKRPTAISF-------IREDTSVLVADKAGDV 131 (390)
T ss_pred ccccccCCCceEEEEEeCCCc---eEEEEEecCCC---cceeeeEeecccCcceeee-------eeccceEEEEeecCCc
Confidence 455778899999999977752 13444544332 1111122222222233332 223333333 3444
Q ss_pred CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 153 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 232 (436)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~ 232 (436)
..+.+|....+.+.. .-||-..++.++|+||+ .+++++..|..|+|-....
T Consensus 132 ~~~di~s~~~~~~~~----------------------------~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa 182 (390)
T KOG3914|consen 132 YSFDILSADSGRCEP----------------------------ILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPA 182 (390)
T ss_pred eeeeeecccccCcch----------------------------hhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCc
Confidence 556666655422222 33899999999999996 6999999999999988876
Q ss_pred CeEEEEE-cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc
Q 013827 233 GKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG 280 (436)
Q Consensus 233 ~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 280 (436)
--.+..+ -||...|..++.-++. .|++++.|++|++||+++++...
T Consensus 183 ~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 183 TFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred ccchhhhccccHhheeeeeeccCc--eeeecCCCCcEEEEecccCCccc
Confidence 6555555 5799999999998865 58999999999999999988763
No 281
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=2.1e-07 Score=86.44 Aligned_cols=191 Identities=9% Similarity=0.014 Sum_probs=113.3
Q ss_pred CCCCCCcE-EEEeeCC---CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCC
Q 013827 138 KDREKGNF-MAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR 213 (436)
Q Consensus 138 ~~s~~~~~-l~~g~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 213 (436)
.|+|||+. ++..+.+ ..|.++|+.+++... +....+......|+|||.
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~----------------------------lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK----------------------------IASSQGMLVVSDVSKDGS 245 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE----------------------------EecCCCcEEeeEECCCCC
Confidence 34999985 6644433 568888887544321 112334456678999987
Q ss_pred cEEEEEeCCC--cEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCC--cEEEEecCCCCCccceEeeeCCe
Q 013827 214 NILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVAADV 289 (436)
Q Consensus 214 ~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~i 289 (436)
.++++.+.++ .|.++|+.+++. ..+..+........|+|+|..++++....+ .|.+.|+.++........ +.
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~- 321 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK- 321 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC-
Confidence 6666665554 577778877763 445434433455689999955555554444 577777776554332221 11
Q ss_pred eEEEeCCCCCcEEEEEeCC--------CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeC-C
Q 013827 290 ESLAWDPHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-D 360 (436)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d 360 (436)
....|+|+|..++++.... ..|.+.|+.++. ...+... .......|+|+| ..|+..+. .
T Consensus 322 ~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~----------~~~LT~~-~~~~~p~~SPDG-~~I~f~~~~~ 389 (419)
T PRK04043 322 NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY----------IRRLTAN-GVNQFPRFSSDG-GSIMFIKYLG 389 (419)
T ss_pred cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC----------eEECCCC-CCcCCeEECCCC-CEEEEEEccC
Confidence 2348999997666666543 367888887652 1222222 223358899999 55544443 3
Q ss_pred C--cEEEEECCCCC
Q 013827 361 K--MVKLWDLSNNQ 372 (436)
Q Consensus 361 ~--~i~iwd~~~~~ 372 (436)
+ .+.+.++....
T Consensus 390 ~~~~L~~~~l~g~~ 403 (419)
T PRK04043 390 NQSALGIIRLNYNK 403 (419)
T ss_pred CcEEEEEEecCCCe
Confidence 3 36666776544
No 282
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.05 E-value=3.1e-06 Score=85.95 Aligned_cols=304 Identities=15% Similarity=0.244 Sum_probs=185.4
Q ss_pred CccccccceeccCCceEEEEEecCCcc-eeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEee
Q 013827 72 DSEDLEDMTINPNDAVIVCARNEDDVS-HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 150 (436)
Q Consensus 72 ~~~~v~~~~~sp~~~~l~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 150 (436)
.++.-..++|-.||.++|+...+...+ .-.+.+|+.+. .+.. ...+++....+++| .|.|+++|+..
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG----~L~s-tSE~v~gLe~~l~W-------rPsG~lIA~~q 275 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG----ELQS-TSEPVDGLEGALSW-------RPSGNLIASSQ 275 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc----eEEe-ccccCCCccCCccC-------CCCCCEEEEEE
Confidence 344556789999999999998743333 44666776653 2322 22356666667777 89999999886
Q ss_pred C---CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEE
Q 013827 151 M---EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 227 (436)
Q Consensus 151 ~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~v 227 (436)
. ...|.+|.-+..+ ...+...+......|..++|++++ .+||..-.|. |.+
T Consensus 276 ~~~~~~~VvFfErNGLr------------------------hgeF~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqL 329 (928)
T PF04762_consen 276 RLPDRHDVVFFERNGLR------------------------HGEFTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQL 329 (928)
T ss_pred EcCCCcEEEEEecCCcE------------------------eeeEecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceE
Confidence 4 3556677654221 122222233456789999999996 5888877655 999
Q ss_pred EeCCCCeE--EEEEcc-cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC----CCCC----------------------
Q 013827 228 WDVAAGKC--NLTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR----ISTH---------------------- 278 (436)
Q Consensus 228 wd~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~----~~~~---------------------- 278 (436)
|-...... .+.+.. ....+..+.|+|..+..|...+.+|.+..++.. ....
T Consensus 330 Wt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf 409 (928)
T PF04762_consen 330 WTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPF 409 (928)
T ss_pred EEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecc
Confidence 98776532 223321 233455599999887778888877777655432 1100
Q ss_pred -------c--cceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccE----------EEeccCC
Q 013827 279 -------S--GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF----------TLHAHDK 339 (436)
Q Consensus 279 -------~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----------~~~~~~~ 339 (436)
+ ......+.+|..++|++++. .+++-..||.+.+|............ ..... .......
T Consensus 410 ~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 487 (928)
T PF04762_consen 410 RRAVVPPPMSSYELELPSPVNDVAFSPSNS-RFAVLTSDGSLSIYEWDLKNMWSVKP-PKLLSSISLDSMDISDSELPLG 487 (928)
T ss_pred cccCCCchHhceEEcCCCCcEEEEEeCCCC-eEEEEECCCCEEEEEecCCCcccccC-cchhhhcccccccccccccccc
Confidence 0 01123457899999999764 58888999999999865542211000 00001 1112245
Q ss_pred CeEEEEecCCCCCEEEEEeCC---CcEEEEECCCCC-ceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 340 AVCTISYNPLVPNLLATGSTD---KMVKLWDLSNNQ-PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 340 ~v~~~~~~p~~~~~l~~~~~d---~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
.+..+.|.... .+++....+ ..+.++++...+ .........-.+.+..+...++.. .++.-..+|.+...+...
T Consensus 488 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~q~~~G~v~~~~~~~ 565 (928)
T PF04762_consen 488 SLRQLAWLNDD-TLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSG-SLYIQTNDGKVFQLSSDG 565 (928)
T ss_pred cEEEEEEeCCC-EEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCc-EEEEEECCCEEEEeecCC
Confidence 57788888766 555555543 578888885433 222333333345666666666655 355567788888666554
Q ss_pred Cc
Q 013827 416 DA 417 (436)
Q Consensus 416 ~~ 417 (436)
..
T Consensus 566 ~~ 567 (928)
T PF04762_consen 566 EL 567 (928)
T ss_pred Cc
Confidence 43
No 283
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.04 E-value=6.7e-07 Score=77.60 Aligned_cols=222 Identities=14% Similarity=0.090 Sum_probs=142.3
Q ss_pred CC-CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEec-CCCCcEEE
Q 013827 140 RE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-KEFRNILA 217 (436)
Q Consensus 140 s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~ 217 (436)
.+ ++.++++--..+.|..|+..+..... . .......+++. +++ .|+
T Consensus 8 d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--------------------------~----~~~~~~G~~~~~~~g--~l~ 55 (246)
T PF08450_consen 8 DPRDGRLYWVDIPGGRIYRVDPDTGEVEV--------------------------I----DLPGPNGMAFDRPDG--RLY 55 (246)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEE--------------------------E----ESSSEEEEEEECTTS--EEE
T ss_pred ECCCCEEEEEEcCCCEEEEEECCCCeEEE--------------------------E----ecCCCceEEEEccCC--EEE
Confidence 44 77888887788999999987543221 0 11126777787 563 555
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEcc-----cCCCeEEEEEcCCCCCEEEEEECC--------CcEEEEecCCCCCccceEe
Q 013827 218 SASADKQVKIWDVAAGKCNLTLEH-----HTDKVQAVAWNHHSPQILLSGSFD--------RSVVMKDARISTHSGFKWA 284 (436)
Q Consensus 218 s~~~dg~v~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d--------~~i~~wd~~~~~~~~~~~~ 284 (436)
.+..+ .+.++|+.+++....... .....+.+++.++| ++.++.... |.|..++.. ........
T Consensus 56 v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~ 131 (246)
T PF08450_consen 56 VADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVAD 131 (246)
T ss_dssp EEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEE
T ss_pred EEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC--CeEEEEec
Confidence 56654 456669998865444332 34567899999999 777766544 446666666 33333444
Q ss_pred eeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEE
Q 013827 285 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK 364 (436)
Q Consensus 285 ~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~ 364 (436)
.-...+.++|+|++..++++-+..+.|..|++........ .......+....+....+++..+| ++.++....+.|.
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~ 208 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELS--NRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIV 208 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEE--EEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEE
T ss_pred CcccccceEECCcchheeecccccceeEEEecccccccee--eeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEE
Confidence 5667899999999876777888899999999875421000 001111222222347889999998 7888877899999
Q ss_pred EEECCCCCceeEEeeCCCCCcEEEEEEc-CCCCcEEEEEe
Q 013827 365 LWDLSNNQPSCIASRNPKAGAVFSVAFS-EDSPFVLAIGG 403 (436)
Q Consensus 365 iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~ 403 (436)
+++.. ++........ ...+++++|. ++...|++|..
T Consensus 209 ~~~p~-G~~~~~i~~p--~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 209 VFDPD-GKLLREIELP--VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEETT-SCEEEEEE-S--SSSEEEEEEESTTSSEEEEEEB
T ss_pred EECCC-ccEEEEEcCC--CCCEEEEEEECCCCCEEEEEeC
Confidence 99988 6644444444 3379999994 67666666653
No 284
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.99 E-value=9.6e-07 Score=78.44 Aligned_cols=225 Identities=14% Similarity=0.116 Sum_probs=149.2
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEE-ecCCCCcEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA-WNKEFRNILAS 218 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~~~~l~s 218 (436)
+.||+.++-. ..|.|.++|-++.....-..-+. . .++.+ ......+..-+. |++-...+++.
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~lekldI~lp-l--------~rk~k-------~~k~~~pskyledfa~~~Gd~ia~ 337 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLP-L--------DRKKK-------QPKFVNPSKYLEDFAVVNGDYIAL 337 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCc-c--------ccccc-------cccccCHHHhhhhhccCCCcEEEE
Confidence 6789888764 46899999987543321100000 0 00000 000111111111 33322358888
Q ss_pred EeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCC-cEEEEecCCCCCccceEeeeCCeeEEEeCCC
Q 013827 219 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-SVVMKDARISTHSGFKWAVAADVESLAWDPH 297 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~ 297 (436)
.|. |...|.+...+-.++. ++...|.-..+..++ .-++.|..|| .+-++|.++.+... ....-+.|.++..+++
T Consensus 338 VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~d 412 (668)
T COG4946 338 VSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPD 412 (668)
T ss_pred Eec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCC
Confidence 886 7788877665544332 366678888888777 5788999999 89999998876444 4445577999999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCC----cEEEEECCCCCc
Q 013827 298 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK----MVKLWDLSNNQP 373 (436)
Q Consensus 298 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~----~i~iwd~~~~~~ 373 (436)
| +.++++.....+.++|+.+++ ....-+...+-|+.+.|+|++ +++|-+--+| .|+++|+.+++.
T Consensus 413 G-K~~vvaNdr~el~vididngn---------v~~idkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 413 G-KKVVVANDRFELWVIDIDNGN---------VRLIDKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred C-cEEEEEcCceEEEEEEecCCC---------eeEecccccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEecCCCeE
Confidence 8 578888899999999999983 233334456779999999998 8999887765 599999999874
Q ss_pred eeEEeeCCCCCcEEEEEEcCCCCcEEE
Q 013827 374 SCIASRNPKAGAVFSVAFSEDSPFVLA 400 (436)
Q Consensus 374 ~~~~~~~~~~~~v~~~~~~~~~~~~l~ 400 (436)
..+.+..++ =.+-+|.||++++..
T Consensus 482 y~vTT~ta~---DfsPaFD~d~ryLYf 505 (668)
T COG4946 482 YDVTTPTAY---DFSPAFDPDGRYLYF 505 (668)
T ss_pred EEecCCccc---ccCcccCCCCcEEEE
Confidence 444333333 345689999997544
No 285
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.98 E-value=1.7e-08 Score=87.39 Aligned_cols=162 Identities=14% Similarity=0.170 Sum_probs=109.6
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc---ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCC
Q 013827 247 QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG---FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP 323 (436)
Q Consensus 247 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~ 323 (436)
..+..++.+ .+++.+..+....+++.+...... .........+++.+..+.. ...++..-|-++-+|+-+..
T Consensus 66 ~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~-sv~v~dkagD~~~~di~s~~--- 140 (390)
T KOG3914|consen 66 ALVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDT-SVLVADKAGDVYSFDILSAD--- 140 (390)
T ss_pred cccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccc-eEEEEeecCCceeeeeeccc---
Confidence 334456666 788888877777777776554311 1223344455555555443 34444333444444433321
Q ss_pred CCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEe
Q 013827 324 DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG 403 (436)
Q Consensus 324 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 403 (436)
..+...+.+|-+.++.++|+||+ .+|+++..|..|++-.......... ..-+|...|..++.-++. .|+++|
T Consensus 141 ----~~~~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~Ies-fclGH~eFVS~isl~~~~--~LlS~s 212 (390)
T KOG3914|consen 141 ----SGRCEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIES-FCLGHKEFVSTISLTDNY--LLLSGS 212 (390)
T ss_pred ----ccCcchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchhh-hccccHhheeeeeeccCc--eeeecC
Confidence 02244567899999999999998 9999999999999987765442111 234699999999998876 489999
Q ss_pred CCCcEEEEeCCCCccccc
Q 013827 404 SKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 404 ~dg~i~iwd~~~~~~~~~ 421 (436)
.|++|++||+.+++++.+
T Consensus 213 GD~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 213 GDKTLRLWDITSGKLLDT 230 (390)
T ss_pred CCCcEEEEecccCCcccc
Confidence 999999999999999855
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=1.1e-09 Score=98.40 Aligned_cols=209 Identities=18% Similarity=0.241 Sum_probs=141.6
Q ss_pred ccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCC-------CeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCC
Q 013827 194 YKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR 266 (436)
Q Consensus 194 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 266 (436)
..+.||+..|..++--.+ .+.+++++.|.+|++|.++. ..+..+++.|..+|.++.|..+. +.++ +.||
T Consensus 729 ~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i~--ScD~ 804 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSIA--SCDG 804 (1034)
T ss_pred ecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-ceee--eccC
Confidence 346789999999887666 46899999999999999863 24667788999999999999877 5554 5589
Q ss_pred cEEEEecCCCCCccceE--eeeCCeeEEEeCC--CCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE---eccCC
Q 013827 267 SVVMKDARISTHSGFKW--AVAADVESLAWDP--HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL---HAHDK 339 (436)
Q Consensus 267 ~i~~wd~~~~~~~~~~~--~~~~~i~~~~~~~--~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~ 339 (436)
.|.+||.--+....... ...+.+..+..-+ +..-+++.++...+|+++|.+... ....... .+...
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce-------~~~E~kVcna~~Pna 877 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE-------WTCELKVCNAPGPNA 877 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc-------ceeeEEeccCCCCch
Confidence 99999986555443211 1122233333333 232344445788999999999872 1222222 23445
Q ss_pred CeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEE-EeCCCCcc
Q 013827 340 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI-WDTLSDAG 418 (436)
Q Consensus 340 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i-wd~~~~~~ 418 (436)
.+.+++..|.| +.++++-..|.|.+.|.++++. +............++- |..+ .|+....|.++.+ |....+..
T Consensus 878 ~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~v--INswrpmecdllqlaa-psdq-~L~~saldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 878 LTRAIAVADKG-NKLAAALSNGCIAILDARNGKV--INSWRPMECDLLQLAA-PSDQ-ALAQSALDHSLAVNWHALDGIM 952 (1034)
T ss_pred heeEEEeccCc-chhhHHhcCCcEEEEecCCCce--eccCCcccchhhhhcC-chhH-HHHhhcccceeEeeehhcCCee
Confidence 68899999998 8999999999999999999873 2222222222333332 4444 3777777888888 87666543
No 287
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=2.7e-09 Score=90.38 Aligned_cols=177 Identities=18% Similarity=0.262 Sum_probs=127.3
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC----CCccce
Q 013827 207 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS----THSGFK 282 (436)
Q Consensus 207 ~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~----~~~~~~ 282 (436)
+|+-+-..+-++.+.+-.|-+-|++++.. +.|. ..+.|.++.|...+ ++++.|..+|.|..+|+|.. .-....
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccc-cccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 66543222335667777899999988753 3444 56789999999887 89999999999999999976 334456
Q ss_pred EeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEE--ecCCCCCEEEEEeCC
Q 013827 283 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS--YNPLVPNLLATGSTD 360 (436)
Q Consensus 283 ~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~p~~~~~l~~~~~d 360 (436)
.-|++.++++..-....+.+++.+.+|+|++||+|..+. ...+.++.+|-..-.-+- ..+.. ..+++++.|
T Consensus 295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~------~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdD 367 (425)
T KOG2695|consen 295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC------KKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDD 367 (425)
T ss_pred EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc------ccceeeeeccccccccccccccccc-ceEEEccCe
Confidence 678899999987764457899999999999999998743 123777888865433332 33444 688889999
Q ss_pred CcEEEEECCCCCceeEEeeCCC--CCcEEEEEEcC
Q 013827 361 KMVKLWDLSNNQPSCIASRNPK--AGAVFSVAFSE 393 (436)
Q Consensus 361 ~~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~ 393 (436)
...+||.++.+...+...+... ...+.+++|..
T Consensus 368 cytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 9999999999986554444332 22355666643
No 288
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=2.7e-07 Score=86.61 Aligned_cols=245 Identities=17% Similarity=0.149 Sum_probs=163.9
Q ss_pred CCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCC----
Q 013827 137 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF---- 212 (436)
Q Consensus 137 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---- 212 (436)
.+|+|.| ++|.|+ ...|.|-|..+.+.++. +.-|...|+.+.|.|..
T Consensus 21 ~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqs---------------------------ie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 21 ADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQS---------------------------IELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred cccCccc-eEEEec-CceEEEEehhhhhhhhc---------------------------cccCccceeEEEeccCCCchh
Confidence 3346666 566665 45778888766555443 44688999999998741
Q ss_pred -------CcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCC---CCCEEEEEECCCcEEEEecCCCCCccce
Q 013827 213 -------RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH---SPQILLSGSFDRSVVMKDARISTHSGFK 282 (436)
Q Consensus 213 -------~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 282 (436)
.-+||++...|.|.+||...+..+..+..|.+++..++|-+. ...+|++-.....+.+|+..+++..-..
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~ 151 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY 151 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc
Confidence 136888888999999999999888889989999999999753 2357888888899999999998876544
Q ss_pred EeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCC-----------------------
Q 013827 283 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK----------------------- 339 (436)
Q Consensus 283 ~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 339 (436)
........++.++|-+...+...+..|.+.+-+.-....+.. ..+..+.-..|..
T Consensus 152 ~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~--pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~f 229 (1062)
T KOG1912|consen 152 DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDV--PGKEFQITSDHSDLAHLERETATGNSTTSTPASAYF 229 (1062)
T ss_pred ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCC--CceeEEEecCccchhhhhhhhhccccccCCCcchhH
Confidence 444555677899997777777777777777766543322111 0111111111111
Q ss_pred --CeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCC-cEEEEEeCCCcEEEEeCCC
Q 013827 340 --AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 340 --~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~ 415 (436)
....++|+|.-.+ ++-......+.++|++-.....+..++ .+.+.-+.+-|+++ -.|.+.-.||.+.+|-.+.
T Consensus 230 ity~a~faf~p~~rn-~lfi~~prellv~dle~~~~l~vvpie--r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 230 ITYCAQFAFSPHWRN-ILFITFPRELLVFDLEYECCLAVVPIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred HHHHHhhhcChhhhc-eEEEEeccceEEEcchhhceeEEEEec--cCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 0123567886533 333345667999999887744444433 44455566766542 2477789999999997665
No 289
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=4.3e-07 Score=85.33 Aligned_cols=297 Identities=12% Similarity=0.113 Sum_probs=184.9
Q ss_pred ccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCC---CCC--CcEEEEe
Q 013827 75 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKD---REK--GNFMAVG 149 (436)
Q Consensus 75 ~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~--~~~l~~g 149 (436)
.-.++.|+|.| ++|.|+.. -|.+.+...-.......+|. ..+..+.|.+...-+ ||. .-+||++
T Consensus 17 N~~A~Dw~~~G-LiAygshs------lV~VVDs~s~q~iqsie~h~----s~V~~VrWap~~~p~~llS~~~~~lliAsa 85 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSHS------LVSVVDSRSLQLIQSIELHQ----SAVTSVRWAPAPSPRDLLSPSSSQLLIASA 85 (1062)
T ss_pred cccccccCccc-eEEEecCc------eEEEEehhhhhhhhccccCc----cceeEEEeccCCCchhccCccccceeEEec
Confidence 36788999988 56666544 55555554432223333333 445678886554332 433 3456777
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCC---CCcEEEEEeCCCcEE
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---FRNILASASADKQVK 226 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~l~s~~~dg~v~ 226 (436)
...|.|.+||....... ..+..|.+++..++|-+. .+..|+.-....++.
T Consensus 86 D~~GrIil~d~~~~s~~---------------------------~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lv 138 (1062)
T KOG1912|consen 86 DISGRIILVDFVLASVI---------------------------NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLV 138 (1062)
T ss_pred cccCcEEEEEehhhhhh---------------------------hhhcCCCcchhheeeeeccCcchheeEEecCCcEEE
Confidence 78899999998754332 225578899999999663 234677767778999
Q ss_pred EEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc---cceEe----eeC------------
Q 013827 227 IWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS---GFKWA----VAA------------ 287 (436)
Q Consensus 227 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~----~~~------------ 287 (436)
+|+..+|+.............|+.+.|-..+.+..-+..|.+.+.+.-..... ..... |..
T Consensus 139 LwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~n 218 (1062)
T KOG1912|consen 139 LWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGN 218 (1062)
T ss_pred EEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccc
Confidence 99999999888887666778889999977677777777888877765422211 11111 100
Q ss_pred ----C---------eeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCC-CE
Q 013827 288 ----D---------VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP-NL 353 (436)
Q Consensus 288 ----~---------i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~ 353 (436)
. ...++|+|.-.+.++. .....+.++|++-. .++....-..+.+.-+.+-|+.. ..
T Consensus 219 s~ts~~~sa~fity~a~faf~p~~rn~lfi-~~prellv~dle~~---------~~l~vvpier~~akfv~vlP~~~rd~ 288 (1062)
T KOG1912|consen 219 STTSTPASAYFITYCAQFAFSPHWRNILFI-TFPRELLVFDLEYE---------CCLAVVPIERGGAKFVDVLPDPRRDA 288 (1062)
T ss_pred cccCCCcchhHHHHHHhhhcChhhhceEEE-EeccceEEEcchhh---------ceeEEEEeccCCcceeEeccCCCcce
Confidence 0 1235667765444443 45667899999865 55666666667677777877652 47
Q ss_pred EEEEeCCCcEEEEECCCCCceeEE---eeCC-CCCc-----------EEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 354 LATGSTDKMVKLWDLSNNQPSCIA---SRNP-KAGA-----------VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 354 l~~~~~d~~i~iwd~~~~~~~~~~---~~~~-~~~~-----------v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
|++...||.+.+|-.+........ .+.. -... +......|..+..++.--.+|.+.+|.+.+++.
T Consensus 289 LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri 368 (1062)
T KOG1912|consen 289 LFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRI 368 (1062)
T ss_pred EEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCc
Confidence 888999999999976652110000 0000 0011 222333454333455555688899999987654
Q ss_pred c
Q 013827 419 I 419 (436)
Q Consensus 419 ~ 419 (436)
-
T Consensus 369 ~ 369 (1062)
T KOG1912|consen 369 H 369 (1062)
T ss_pred C
Confidence 3
No 290
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.94 E-value=8.6e-09 Score=95.78 Aligned_cols=221 Identities=17% Similarity=0.261 Sum_probs=155.1
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCC-CcEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILAS 218 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s 218 (436)
+|.|+-+|.++.-|.. +.|++..-.... . ...-..-.|-...|+|.. ..+-++
T Consensus 33 ~p~grdi~lAsr~gl~-i~dld~p~~ppr--~-----------------------l~h~tpw~vad~qws~h~a~~~wiV 86 (1081)
T KOG0309|consen 33 NPSGRDIVLASRQGLY-IIDLDDPFTPPR--W-----------------------LHHITPWQVADVQWSPHPAKPYWIV 86 (1081)
T ss_pred ccccchhhhhhhcCeE-EEeccCCCCCce--e-----------------------eeccCcchhcceecccCCCCceeEE
Confidence 7788888888876644 556653221111 0 000112246667787642 124444
Q ss_pred EeCCCcEEEEeCCCC---eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE-eeeCCeeEEEe
Q 013827 219 ASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAW 294 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~i~~~~~ 294 (436)
........+|++... .....+.+|...|+.+.|+|..+..+++++.|-.+..||++....+.... .-......|.|
T Consensus 87 sts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkw 166 (1081)
T KOG0309|consen 87 STSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKW 166 (1081)
T ss_pred ecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeee
Confidence 444566778988643 33445678999999999999999999999999999999999887654333 34566788999
Q ss_pred CCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCce
Q 013827 295 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS 374 (436)
Q Consensus 295 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~ 374 (436)
+...++ +.+.+....|.+||++.+ ..++..+++|...|+.++|+..-...+.+.+.|++|+.||.......
T Consensus 167 nyk~p~-vlasshg~~i~vwd~r~g--------s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 167 NYKDPN-VLASSHGNDIFVWDLRKG--------STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE 237 (1081)
T ss_pred cccCcc-hhhhccCCceEEEeccCC--------CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence 987765 455566778999999998 47788999999999999999866568899999999999998765432
Q ss_pred eEEeeCCCCCcEEEEEEcCCCC
Q 013827 375 CIASRNPKAGAVFSVAFSEDSP 396 (436)
Q Consensus 375 ~~~~~~~~~~~v~~~~~~~~~~ 396 (436)
...... ...+|+.-++.|-|.
T Consensus 238 ~~~~vt-t~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 238 SKRTVT-TNFPIWRGRYLPFGE 258 (1081)
T ss_pred cceecc-ccCcceeccccccCc
Confidence 222222 344677777777554
No 291
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.93 E-value=2e-06 Score=79.89 Aligned_cols=229 Identities=15% Similarity=0.126 Sum_probs=135.6
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 221 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 221 (436)
++..+++++.+|.+..+|..+++..-.... ...+.+.-...+ ..++.++.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~----------------------------~~~~~~~p~v~~--~~v~v~~~ 153 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKL----------------------------SSEVLSPPLVAN--GLVVVRTN 153 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeecc----------------------------CceeecCCEEEC--CEEEEECC
Confidence 567788888999999999987765432110 111111111112 25677788
Q ss_pred CCcEEEEeCCCCeEEEEEcccCCCeE-----EEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE-eeeC---C---e
Q 013827 222 DKQVKIWDVAAGKCNLTLEHHTDKVQ-----AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAA---D---V 289 (436)
Q Consensus 222 dg~v~vwd~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~---~---i 289 (436)
++.+..+|.++++.+..+......+. +.... + ..++.+..++.+..+|+++++..-... .... . .
T Consensus 154 ~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~ 230 (377)
T TIGR03300 154 DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERL 230 (377)
T ss_pred CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhh
Confidence 99999999999988777653322111 11111 2 357778888999999998776432111 0000 0 0
Q ss_pred eEEEeCC--CCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 013827 290 ESLAWDP--HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 367 (436)
Q Consensus 290 ~~~~~~~--~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd 367 (436)
..+.-.| .+ ..+++++.+|.+..||..+++ .+..... .....+.. .+ ..+++++.+|.+..+|
T Consensus 231 ~~~~~~p~~~~-~~vy~~~~~g~l~a~d~~tG~---------~~W~~~~--~~~~~p~~--~~-~~vyv~~~~G~l~~~d 295 (377)
T TIGR03300 231 VDVDGDPVVDG-GQVYAVSYQGRVAALDLRSGR---------VLWKRDA--SSYQGPAV--DD-NRLYVTDADGVVVALD 295 (377)
T ss_pred hccCCccEEEC-CEEEEEEcCCEEEEEECCCCc---------EEEeecc--CCccCceE--eC-CEEEEECCCCeEEEEE
Confidence 0010011 12 467778889999999998872 2333221 11122222 23 6788888999999999
Q ss_pred CCCCCceeEEeeCCC-CCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccc
Q 013827 368 LSNNQPSCIASRNPK-AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 423 (436)
Q Consensus 368 ~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (436)
..+++. +...... ......... .+. .+++++.+|.|+++|..+++.+.+.-
T Consensus 296 ~~tG~~--~W~~~~~~~~~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 296 RRSGSE--LWKNDELKYRQLTAPAV--VGG-YLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred CCCCcE--EEccccccCCccccCEE--ECC-EEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 998873 3333211 111222222 244 47778999999999999998886543
No 292
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.93 E-value=1.4e-06 Score=77.88 Aligned_cols=232 Identities=11% Similarity=0.016 Sum_probs=131.4
Q ss_pred CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEe---------CCC
Q 013827 153 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS---------ADK 223 (436)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~---------~dg 223 (436)
++|.|.|.++.+.+..+.. +.... .+ ++|+|+.+.++.+ .+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~--------------------------G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d 77 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG--------------------------GFLPN--PV-VASDGSFFAHASTVYSRIARGKRTD 77 (352)
T ss_pred ceEEEEECCCCEEEEEEEc--------------------------cCCCc--ee-ECCCCCEEEEEeccccccccCCCCC
Confidence 8999999987665544321 22222 24 8999875555566 688
Q ss_pred cEEEEeCCCCeEEEEEccc-------CCCeEEEEEcCCCCCEEEEEE-C-CCcEEEEecCCCCCccceEeeeCCeeEEEe
Q 013827 224 QVKIWDVAAGKCNLTLEHH-------TDKVQAVAWNHHSPQILLSGS-F-DRSVVMKDARISTHSGFKWAVAADVESLAW 294 (436)
Q Consensus 224 ~v~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s~~-~-d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~ 294 (436)
.|.+||+.+.+.+..+..- ......++++|+| ++++... . +..|.+.|+.+.+...... .++...-...
T Consensus 78 ~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dg-k~l~V~n~~p~~~V~VvD~~~~kvv~ei~-vp~~~~vy~t 155 (352)
T TIGR02658 78 YVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDN-KTLLFYQFSPSPAVGVVDLEGKAFVRMMD-VPDCYHIFPT 155 (352)
T ss_pred EEEEEECccCcEEeEEccCCCchhhccCccceEEECCCC-CEEEEecCCCCCEEEEEECCCCcEEEEEe-CCCCcEEEEe
Confidence 9999999999999888632 1233478999999 6666555 4 7899999999887665222 2222222222
Q ss_pred CCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCe-EEEEecC-CCCCEEEEEeCCCcEEEEECCCCC
Q 013827 295 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV-CTISYNP-LVPNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 295 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~p-~~~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
++.. +.+-+.||......+....... ......+..-..++ ..-.|.+ ++ .++.+... |+|.+.|+....
T Consensus 156 ~e~~---~~~~~~Dg~~~~v~~d~~g~~~----~~~~~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~ 226 (352)
T TIGR02658 156 ANDT---FFMHCRDGSLAKVGYGTKGNPK----IKPTEVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGD 226 (352)
T ss_pred cCCc---cEEEeecCceEEEEecCCCceE----EeeeeeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCc
Confidence 2211 1122334444443333221100 00011111100000 0014456 66 66666655 999999975533
Q ss_pred ce-----eEEeeCC-----CCCcEEEEEEcCCCCcEEEEEe---------CCCcEEEEeCCCCcccccccc
Q 013827 373 PS-----CIASRNP-----KAGAVFSVAFSEDSPFVLAIGG---------SKGKLEIWDTLSDAGISNRFS 424 (436)
Q Consensus 373 ~~-----~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~ 424 (436)
.. ....... ..+.+.-++++|+++.+++... ..+.|.++|..+++.+.+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v 297 (352)
T TIGR02658 227 AKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL 297 (352)
T ss_pred ceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC
Confidence 21 1111110 2233445999999987665331 225799999999998877553
No 293
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.92 E-value=6.6e-08 Score=81.04 Aligned_cols=275 Identities=14% Similarity=0.246 Sum_probs=164.5
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCC-----CCceeeecccccCc--------CcceeecccCCC
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG-----DPNLYVHHHIIIPA--------FPLCMAWLDCPL 137 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 137 (436)
.+.+.|+++.|...|.+|++|...+ +|..|+....+ ....+..|+..... -...+.|+.
T Consensus 24 tead~ItaVefd~tg~YlatGDkgG-----RVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~--- 95 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGG-----RVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFD--- 95 (460)
T ss_pred cccceeeEEEeccccceEeecCCCc-----eEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeec---
Confidence 3467899999999999999997665 77777654432 01123444333222 234566752
Q ss_pred CCCCCCcEEEEeeCCCcEEEEeCCCCCCC--cceee-------ecccchh-hhhhcccCCC------cccccccccCccc
Q 013827 138 KDREKGNFMAVGSMEPAIEIWDLDVIDEV--QPHVI-------LGGIDEE-KKKKKSKKGK------KSSIKYKKGSHTD 201 (436)
Q Consensus 138 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~--~~~~~-------~~~~~~~-~~~~~~~~~~------~~~~~~~~~~h~~ 201 (436)
...-..++..+.|.+|++|.+...... ..... .++.-.+ +.....+-.+ ..+.+..-..|.-
T Consensus 96 --~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~y 173 (460)
T COG5170 96 --DTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPY 173 (460)
T ss_pred --CCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecccccee
Confidence 122345666678999999998654211 00000 0000000 0000000000 1111222357888
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCe---EEEEEccc-----CCCeEEEEEcCCCCCEEEEEECCCcEEEEec
Q 013827 202 SVLGLAWNKEFRNILASASADKQVKIWDVAAGK---CNLTLEHH-----TDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 273 (436)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~---~~~~~~~~-----~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~ 273 (436)
-|+++.|+.+. ..++++ .|-.|.+|+++... .+..++.| ..-|++..|+|.....+.-.+..|.|++-|+
T Consensus 174 hiNSiS~NsD~-et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~Dl 251 (460)
T COG5170 174 HINSISFNSDK-ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDL 251 (460)
T ss_pred EeeeeeecCch-heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhh
Confidence 99999999984 455554 46789999987432 23333433 3568899999988778888899999999999
Q ss_pred CCCCCcc----------------ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEecc
Q 013827 274 RISTHSG----------------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH 337 (436)
Q Consensus 274 ~~~~~~~----------------~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 337 (436)
|...... .+......|..+.|+++| ++++ +-.--++++||.+..+ .++.+..-|
T Consensus 252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIl-sRdyltvkiwDvnm~k--------~pikTi~~h 321 (460)
T COG5170 252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYIL-SRDYLTVKIWDVNMAK--------NPIKTIPMH 321 (460)
T ss_pred hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEE-EeccceEEEEeccccc--------CCceeechH
Confidence 8432210 011223568899999977 3444 4455689999999874 555555444
Q ss_pred C------------CCe---EEEEecCCCCCEEEEEeCCCcEEEEEC
Q 013827 338 D------------KAV---CTISYNPLVPNLLATGSTDKMVKLWDL 368 (436)
Q Consensus 338 ~------------~~v---~~~~~~p~~~~~l~~~~~d~~i~iwd~ 368 (436)
. ..| ..+.|+-+. ..+++|+..+..-+|-.
T Consensus 322 ~~l~~~l~d~YEnDaifdkFeisfSgd~-~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 322 CDLMDELNDVYENDAIFDKFEISFSGDD-KHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HHHHHHHHhhhhccceeeeEEEEecCCc-ccccccccccceeeecc
Confidence 2 112 346677776 67778887777666653
No 294
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.2e-08 Score=89.53 Aligned_cols=212 Identities=17% Similarity=0.108 Sum_probs=154.1
Q ss_pred CcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCC---CeEEEEEcccCCCeEEEEEcCCCCCEEEEEEC-CCcEEEEec
Q 013827 198 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA---GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDA 273 (436)
Q Consensus 198 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~~wd~ 273 (436)
-|.+.|+.+.-... .++.+++.||.++.|.-.. -+.+..+..|...|.+++.+.++ .++.+.+. |..++++|+
T Consensus 7 mhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEeeehh--heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEe
Confidence 38888888876654 5999999999999998543 13345556788899999999999 88888777 999999999
Q ss_pred CCCCCccceEeeeCCeeEEEeCCCCC----cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCC
Q 013827 274 RISTHSGFKWAVAADVESLAWDPHAE----HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 349 (436)
Q Consensus 274 ~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 349 (436)
..-..+.. .........+.|....+ .+.+....++.+.++|-+... .+....-.-|..+|..+.++|.
T Consensus 84 En~Dminm-iKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~-------~q~~~fkklH~sPV~~i~y~qa 155 (558)
T KOG0882|consen 84 ENFDMINM-IKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDF-------CQDGYFKKLHFSPVKKIRYNQA 155 (558)
T ss_pred eccchhhh-cccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCc-------CccceecccccCceEEEEeecc
Confidence 87665531 11222222333322111 233344578999999988763 2445666779999999999998
Q ss_pred CCCEEEEEeCCCcEEEEECCC-CC-c-----------eeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 350 VPNLLATGSTDKMVKLWDLSN-NQ-P-----------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 350 ~~~~l~~~~~d~~i~iwd~~~-~~-~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
+ ..+++....|.|.-|.... .+ + ..+..+.-......++.|+|++.. +.+-+.|..|+++++.++
T Consensus 156 ~-Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q-istl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 156 G-DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ-ISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred c-cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc-ccccCcccEEEEEEeccc
Confidence 8 8888888899999998873 11 0 011122223456789999999995 888889999999999999
Q ss_pred cccccc
Q 013827 417 AGISNR 422 (436)
Q Consensus 417 ~~~~~~ 422 (436)
+.++..
T Consensus 234 klvqei 239 (558)
T KOG0882|consen 234 KLVQEI 239 (558)
T ss_pred hhhhhh
Confidence 987654
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=1e-08 Score=86.98 Aligned_cols=173 Identities=15% Similarity=0.192 Sum_probs=122.3
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 013827 249 VAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQ 328 (436)
Q Consensus 249 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~ 328 (436)
++|+-+-..+-++.+.+-.+.+-|+.++-... +...+.|.+..|...+ ++++.|..+|.|..+|+|.......
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--f~sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~---- 289 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--FQSKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNG---- 289 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeecccccc--cccchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCC----
Confidence 35553321223566677888888888765544 3367788899998755 6999999999999999998733221
Q ss_pred cccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc-eeEEeeCCCCCcEE--EEEEcCCCCcEEEEEeCC
Q 013827 329 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVF--SVAFSEDSPFVLAIGGSK 405 (436)
Q Consensus 329 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~--~~~~~~~~~~~l~s~~~d 405 (436)
.+... .-|...|+++..-...+.+|++.+.+|+|++||.+..+. ..+....+|...-. -+-..+... .+++++.|
T Consensus 290 ~~a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdD 367 (425)
T KOG2695|consen 290 WCAQR-LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDD 367 (425)
T ss_pred cceEE-EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc-eEEEccCe
Confidence 23333 348899999887773348899999999999999997652 23666677643222 223445555 57779999
Q ss_pred CcEEEEeCCCCccccccccCCCCCC
Q 013827 406 GKLEIWDTLSDAGISNRFSKYSKPK 430 (436)
Q Consensus 406 g~i~iwd~~~~~~~~~~~~~~~~~~ 430 (436)
-..+||.+.++..+.+....+..+.
T Consensus 368 cytRiWsl~~ghLl~tipf~~s~~e 392 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPFPYSASE 392 (425)
T ss_pred eEEEEEecccCceeeccCCCCcccc
Confidence 9999999999999887665555443
No 296
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.81 E-value=7.3e-06 Score=76.10 Aligned_cols=221 Identities=10% Similarity=0.084 Sum_probs=124.8
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCC
Q 013827 143 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 222 (436)
Q Consensus 143 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 222 (436)
+..++.++.+|.|+.||..+++..-..... .....+.....+ ... + ..++.+..+
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~------------------~~~~~~~~~~sp----~~~-~--~~v~~~~~~ 199 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRV------------------TPALTLRGSASP----VIA-D--GGVLVGFAG 199 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccC------------------CCceeecCCCCC----EEE-C--CEEEEECCC
Confidence 456777788999999999877654321100 000000011111 111 2 257778888
Q ss_pred CcEEEEeCCCCeEEEEEcccCC----C---eEEEEEcC--CCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEE
Q 013827 223 KQVKIWDVAAGKCNLTLEHHTD----K---VQAVAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA 293 (436)
Q Consensus 223 g~v~vwd~~~~~~~~~~~~~~~----~---v~~~~~~~--~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~ 293 (436)
+.+..+|+++++.+........ . ...+.-+| .+ ..++.++.+|.+..+|..+++..-.. .. .......
T Consensus 200 g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~-~~vy~~~~~g~l~a~d~~tG~~~W~~-~~-~~~~~p~ 276 (377)
T TIGR03300 200 GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDG-GQVYAVSYQGRVAALDLRSGRVLWKR-DA-SSYQGPA 276 (377)
T ss_pred CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEEC-CEEEEEEcCCEEEEEECCCCcEEEee-cc-CCccCce
Confidence 9999999999876654321100 0 00000011 23 46777888999999999877643211 11 1111222
Q ss_pred eCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEecc-CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 013827 294 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 294 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
. .+ ..+++++.+|.+..+|..+++ .+...... ......... .+ ..|++++.+|.|+++|..+++
T Consensus 277 ~--~~-~~vyv~~~~G~l~~~d~~tG~---------~~W~~~~~~~~~~ssp~i--~g-~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 277 V--DD-NRLYVTDADGVVVALDRRSGS---------ELWKNDELKYRQLTAPAV--VG-GYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred E--eC-CEEEEECCCCeEEEEECCCCc---------EEEccccccCCccccCEE--EC-CEEEEEeCCCEEEEEECCCCC
Confidence 2 23 467778899999999998873 22222111 111222222 23 688899999999999999988
Q ss_pred ceeEEeeCCCCCcEE-EEEEcCCCCcEEEEEeCCCcEEEE
Q 013827 373 PSCIASRNPKAGAVF-SVAFSEDSPFVLAIGGSKGKLEIW 411 (436)
Q Consensus 373 ~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~dg~i~iw 411 (436)
. +.....+...+. ...+. ++. |+.++.||.|+.|
T Consensus 342 ~--~~~~~~~~~~~~~sp~~~-~~~--l~v~~~dG~l~~~ 376 (377)
T TIGR03300 342 F--VARLKTDGSGIASPPVVV-GDG--LLVQTRDGDLYAF 376 (377)
T ss_pred E--EEEEEcCCCccccCCEEE-CCE--EEEEeCCceEEEe
Confidence 4 444443333332 22333 343 5568899998765
No 297
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.1e-07 Score=83.63 Aligned_cols=250 Identities=13% Similarity=0.123 Sum_probs=165.4
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 221 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 221 (436)
-.+++.+++.||.++.|.-..-. .......+..|...|.+++.+-++ .++.|.+.
T Consensus 19 ka~fiiqASlDGh~KFWkKs~is------------------------GvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d 73 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRIS------------------------GVEFVKHFRAHLGVILSLAVSYDG-WLFRSVED 73 (558)
T ss_pred hhheEEeeecchhhhhcCCCCcc------------------------ceeehhhhHHHHHHHHhhhccccc-eeEeeccC
Confidence 47789999999999999743211 123344456799999999999996 58888777
Q ss_pred -CCcEEEEeCCCCeEEEEEc--ccCCCeEEEEEcCCCC--CEEEEEECCCcEEEEecCCCCCcc--ceEeeeCCeeEEEe
Q 013827 222 -DKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAW 294 (436)
Q Consensus 222 -dg~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~i~~~~~ 294 (436)
|..++++|+++-..+.-++ ...+.+. ...++... .+.++.-.++.+.++|-....+.. ...-|..+|..+.+
T Consensus 74 ~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y 152 (558)
T KOG0882|consen 74 PDHSVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRY 152 (558)
T ss_pred cccceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEe
Confidence 9999999998755443332 1122221 12223211 223334467899999988766443 23357889999999
Q ss_pred CCCCCcEEEEEeCCCcEEEEeCCC-CCCCC-----CCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 013827 295 DPHAEHSFVVSLEDGTIKGFDIRT-AKSDP-----DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 368 (436)
Q Consensus 295 ~~~~~~~~~~~~~dg~i~i~d~~~-~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~ 368 (436)
++.+ ..+++....|.|.-|.... .+.+. .......+..+........++.|+|++ ..+.+-+.|..|++++.
T Consensus 153 ~qa~-Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 153 NQAG-DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVF 230 (558)
T ss_pred eccc-cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEe
Confidence 9977 5788888899999999873 11111 111122233344455678899999999 89999999999999999
Q ss_pred CCCCceeEE------------------------------eeCCCC-CcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 369 SNNQPSCIA------------------------------SRNPKA-GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 369 ~~~~~~~~~------------------------------~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
.+++..... .+..|. ..-+.+.|...|.++|. ++-= -|++.++.++.
T Consensus 231 KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly-~t~~-gikvin~~tn~ 308 (558)
T KOG0882|consen 231 KTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLY-GTIL-GIKVINLDTNT 308 (558)
T ss_pred ccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEe-ecce-eEEEEEeecCe
Confidence 887532110 001111 12356788889986443 5544 38999999888
Q ss_pred cccc
Q 013827 418 GISN 421 (436)
Q Consensus 418 ~~~~ 421 (436)
.++.
T Consensus 309 v~ri 312 (558)
T KOG0882|consen 309 VVRI 312 (558)
T ss_pred EEEE
Confidence 7654
No 298
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.79 E-value=9.9e-06 Score=70.28 Aligned_cols=197 Identities=12% Similarity=0.137 Sum_probs=126.2
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEc-CCCCCEEEEEECCCcEEEEecCCCCCccceE
Q 013827 205 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN-HHSPQILLSGSFDRSVVMKDARISTHSGFKW 283 (436)
Q Consensus 205 ~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 283 (436)
++.|.+....++++--..+.|..|+..+++... +.... ...+.+. +++ .++.+...+ +.++|..+.+......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g--~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG--RLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS--EEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC--EEEEEEcCc-eEEEecCCCcEEEEee
Confidence 578888434577777778999999998876533 32222 6777887 554 455555544 4555888775443333
Q ss_pred e-----eeCCeeEEEeCCCCCcEEEEEeCC--------CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC
Q 013827 284 A-----VAADVESLAWDPHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 350 (436)
Q Consensus 284 ~-----~~~~i~~~~~~~~~~~~~~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 350 (436)
. ....++.++++|+|. +.++.... |.|..++.. + + .......-...+.++|+|++
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~---------~-~~~~~~~~~~pNGi~~s~dg 145 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-G---------K-VTVVADGLGFPNGIAFSPDG 145 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-S---------E-EEEEEEEESSEEEEEEETTS
T ss_pred ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-C---------e-EEEEecCcccccceEECCcc
Confidence 2 224578999999884 66665433 456666666 3 1 22333344567899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCCc-----eeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 351 PNLLATGSTDKMVKLWDLSNNQP-----SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 351 ~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
..++++-+..+.|..+++..... .....+....+....+++..+|. ++++....+.|.+++.. ++.+..
T Consensus 146 ~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G~~~~~ 219 (246)
T PF08450_consen 146 KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-GKLLRE 219 (246)
T ss_dssp SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCEEEE
T ss_pred hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-ccEEEE
Confidence 43445667788899999864321 12223333334588999999998 67777788999999987 666543
No 299
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3.4e-07 Score=79.54 Aligned_cols=220 Identities=15% Similarity=0.191 Sum_probs=137.6
Q ss_pred cccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC
Q 013827 195 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 274 (436)
Q Consensus 195 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 274 (436)
.+.+|...|.+++|+|....++..++.+..|+|.|+++..++..+..+ ..+++++|.-+..+++..|-..|.|.+||++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 456788999999999986558999999999999999999988888877 8899999999988899999999999999999
Q ss_pred CCCCccceEe---eeCCeeEEEeC------CCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEE
Q 013827 275 ISTHSGFKWA---VAADVESLAWD------PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS 345 (436)
Q Consensus 275 ~~~~~~~~~~---~~~~i~~~~~~------~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 345 (436)
..+.+..... ...+|..++.- +.+ .+++....+ +..|.+..... ...++..+ ...+...+++
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~lt~--l~f~ei~~s~~-----~~p~vlel-e~pG~cismq 337 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFALTV--LQFYEIVFSAE-----CLPCVLEL-EPPGICISMQ 337 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCcccccccc-ceEEeeehh--hhhhhhhcccc-----CCCccccc-CCCcceeeee
Confidence 7765432211 12333333322 223 233333322 45566544321 01111111 2345666777
Q ss_pred ecCCCCCEEEEEeCCCc------EEE-EECCCCCceeEEeeCCC-CC------cEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 013827 346 YNPLVPNLLATGSTDKM------VKL-WDLSNNQPSCIASRNPK-AG------AVFSVAFSEDSPFVLAIGGSKGKLEIW 411 (436)
Q Consensus 346 ~~p~~~~~l~~~~~d~~------i~i-wd~~~~~~~~~~~~~~~-~~------~v~~~~~~~~~~~~l~s~~~dg~i~iw 411 (436)
+++...++|++.-.+.+ |-+ -|..++.+.+.. ...+ .+ .-..+.-.++..+++..++..+.+.+|
T Consensus 338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~-r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~ 416 (463)
T KOG1645|consen 338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGK-RRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQ 416 (463)
T ss_pred ecCccceEEEEecCCCCCccceeeeeeeccccCceeeee-cccccCCcccccccccceeccccccEEEEecCCcceeEEe
Confidence 77755456666554311 111 122233322211 1111 11 111233345667777888888999999
Q ss_pred eCCCCccccccccC
Q 013827 412 DTLSDAGISNRFSK 425 (436)
Q Consensus 412 d~~~~~~~~~~~~~ 425 (436)
|..+.+.++++...
T Consensus 417 D~~s~evvQ~l~~~ 430 (463)
T KOG1645|consen 417 DPHSFEVVQTLALS 430 (463)
T ss_pred ccchhheeeecccC
Confidence 99999988876443
No 300
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.76 E-value=6.3e-08 Score=79.15 Aligned_cols=199 Identities=17% Similarity=0.201 Sum_probs=120.9
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeE------------EEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 013827 203 VLGLAWNKEFRNILASASADKQVKIWDVAAGKC------------NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM 270 (436)
Q Consensus 203 v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~ 270 (436)
|+.+.+.-+ ..|+++..++.+.....-.+.+ ...+..|+++-.+-..+-.+ +.++++..||.+.+
T Consensus 39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~-t~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTD-NRVCIGYADGSLAV 115 (319)
T ss_pred EEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccC-CceEecCCCceEEE
Confidence 666777665 4778887777766665443322 22233333332222223333 56899999999999
Q ss_pred EecCCCCCccceEe-eeCCeeEEEeCCCCCcEEEEEe-----CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEE
Q 013827 271 KDARISTHSGFKWA-VAADVESLAWDPHAEHSFVVSL-----EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI 344 (436)
Q Consensus 271 wd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 344 (436)
.+.+.......... ......+.+....+ +++.++. .-+..+.|+++..+ ..+.... ....|+++
T Consensus 116 ~s~~~~~~~~~~i~~~~~~~as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~--------t~~~~~~-~~~~v~~l 185 (319)
T KOG4714|consen 116 FSTDKDLALMSRIPSIHSGSASRKICRHG-NSILSGGCGNWNAQDNFYANTLDPIK--------TLIPSKK-ALDAVTAL 185 (319)
T ss_pred EechHHHhhhhhcccccccccccceeecc-cEEecCCcceEeeccceeeecccccc--------ccccccc-ccccchhh
Confidence 99876221111110 00111111122222 2232221 22345566665431 1111111 22348999
Q ss_pred EecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 345 SYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 345 ~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
+-+|...+++++|+.||.+-+||++... .....+..|..+++.+-|+|..+.-|.+++.||.+..||..+
T Consensus 186 ~~hp~qq~~v~cgt~dg~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 186 CSHPAQQHLVCCGTDDGIVGLWDARNVA-MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hCCcccccEEEEecCCCeEEEEEccccc-chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999887899999999999999999874 344456789999999999997655688999999999999874
No 301
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.76 E-value=3.2e-07 Score=87.64 Aligned_cols=186 Identities=15% Similarity=0.200 Sum_probs=137.6
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 221 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 221 (436)
++..++.|+....+..+|+.+.+...... -....|+-++.+ + .++.+|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~---------------------------v~a~~v~imR~N--n-r~lf~G~t 195 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTN---------------------------VSASGVTIMRYN--N-RNLFCGDT 195 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeee---------------------------ccCCceEEEEec--C-cEEEeecc
Confidence 56667888888888888887655443211 122235555543 2 48999999
Q ss_pred CCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEEC---------CCcEEEEecCCCCCccceEeeeCCeeEE
Q 013827 222 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF---------DRSVVMKDARISTHSGFKWAVAADVESL 292 (436)
Q Consensus 222 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---------d~~i~~wd~~~~~~~~~~~~~~~~i~~~ 292 (436)
.|+|.+-|..+.+.++++..|++.|..+... | +.|++++. |.-|++||+|..+.+.. ........-+
T Consensus 196 ~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P-I~~~~~P~fl 271 (1118)
T KOG1275|consen 196 RGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP-IQFPYGPQFL 271 (1118)
T ss_pred cceEEeecCCcCceeeeeeccccceeeeecc--C-CeEEEeecccccccccccchhhhhhhhhhhccCC-cccccCchhh
Confidence 9999999999999999999999999877664 5 78888886 45679999998776552 2333334667
Q ss_pred EeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 013827 293 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 367 (436)
Q Consensus 293 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd 367 (436)
.|.|.-...+++.+..|...+-|..+...+ ...+..+......+..+.+++++ ..++.|..+|.|.+|.
T Consensus 272 rf~Psl~t~~~V~S~sGq~q~vd~~~lsNP-----~~~~~~v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 272 RFHPSLTTRLAVTSQSGQFQFVDTATLSNP-----PAGVKMVNPNGSGISAFDISSNG-DALAFGDHEGHVNLWA 340 (1118)
T ss_pred hhcccccceEEEEecccceeeccccccCCC-----ccceeEEccCCCcceeEEecCCC-ceEEEecccCcEeeec
Confidence 888876678999999999999994433111 12244445555669999999998 9999999999999997
No 302
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.73 E-value=7.7e-07 Score=85.16 Aligned_cols=182 Identities=16% Similarity=0.240 Sum_probs=138.8
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEE
Q 013827 214 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA 293 (436)
Q Consensus 214 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~ 293 (436)
..++.|+....+..+|+.+.+..+......+.|+-|+.+ + +++.+|...|+|.+-|.++.+.+..+..|.+.+..+.
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N--n-r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN--N-RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEEec--C-cEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 356677777788899999887776665555567766654 3 7899999999999999999999998899999998887
Q ss_pred eCCCCCcEEEEEeC---------CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEE
Q 013827 294 WDPHAEHSFVVSLE---------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK 364 (436)
Q Consensus 294 ~~~~~~~~~~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~ 364 (436)
.. | +++++++. |.-|++||+|... .+..+.-+.++ .-+.|+|.-...+++++..|...
T Consensus 225 v~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmr---------al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 225 VQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMR---------ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred cc--C-CeEEEeecccccccccccchhhhhhhhhhh---------ccCCcccccCc-hhhhhcccccceEEEEeccccee
Confidence 65 4 56776653 5668999999873 23333333333 56788998778899999999999
Q ss_pred EEECCCCC--ceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 013827 365 LWDLSNNQ--PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 365 iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 412 (436)
+-|..+.. +..+.........+.++.+++++. .+|.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeec
Confidence 99843311 123444555566699999999999 599999999999998
No 303
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.69 E-value=9.3e-06 Score=80.51 Aligned_cols=288 Identities=11% Similarity=0.169 Sum_probs=157.2
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEee
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 150 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 150 (436)
..++.|.++.|.-+..-++.+...| .|.+.+..+. .+... ..+.....+.+| |||++.++..+
T Consensus 66 ~gd~~i~s~~fl~d~~~i~v~~~~G-----~iilvd~et~---~~eiv--g~vd~GI~aasw-------S~Dee~l~liT 128 (1265)
T KOG1920|consen 66 DGDDEIVSVQFLADTNSICVITALG-----DIILVDPETL---ELEIV--GNVDNGISAASW-------SPDEELLALIT 128 (1265)
T ss_pred CCCcceEEEEEecccceEEEEecCC-----cEEEEccccc---ceeee--eeccCceEEEee-------cCCCcEEEEEe
Confidence 3457899999999999999998887 4444444443 22211 123344567788 99999999999
Q ss_pred CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 013827 151 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 230 (436)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~ 230 (436)
..+++.+-+- +...+..... ..-....+..-.+-|-... + -+.|+. |.....+.
T Consensus 129 ~~~tll~mT~-~f~~i~E~~L----------------------~~d~~~~sk~v~VGwGrke-T-qfrgs~-gr~~~~~~ 182 (1265)
T KOG1920|consen 129 GRQTLLFMTK-DFEPIAEKPL----------------------DADDERKSKFVNVGWGRKE-T-QFRGSE-GRQAARQK 182 (1265)
T ss_pred CCcEEEEEec-cccchhcccc----------------------ccccccccccceecccccc-e-eeecch-hhhccccc
Confidence 8888877543 2222211100 0000011122233333321 1 111211 22221111
Q ss_pred CCCeE-EEEEcccCCCeEEEEEcCCCCCEEEEEE----CC-CcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEE
Q 013827 231 AAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGS----FD-RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV 304 (436)
Q Consensus 231 ~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~----~d-~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 304 (436)
...+. ......+ +.=+++.|-.|| .++++.. .+ ..|++||-. +..........+--.+++|-|.| .++++
T Consensus 183 ~~~ek~~~~~~~~-~~~~~IsWRgDg-~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsg-s~iA~ 258 (1265)
T KOG1920|consen 183 IEKEKALEQIEQD-DHKTSISWRGDG-EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSG-SLIAA 258 (1265)
T ss_pred ccccccccchhhc-cCCceEEEccCC-cEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCC-CeEee
Confidence 11110 1111112 223568999999 7777632 23 789999987 33333233344455788999977 45655
Q ss_pred E---eCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEE---EeCCCcEEEEECCCCCceeEEe
Q 013827 305 S---LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT---GSTDKMVKLWDLSNNQPSCIAS 378 (436)
Q Consensus 305 ~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~---~~~d~~i~iwd~~~~~~~~~~~ 378 (436)
- +.|+.|.+|.-..... ......+.....++..++|+.++ ..||+ ......|++|-+.+........
T Consensus 259 iq~~~sd~~IvffErNGL~h------g~f~l~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~NyhWYLKq~ 331 (1265)
T KOG1920|consen 259 IQCKTSDSDIVFFERNGLRH------GEFVLPFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNYHWYLKQE 331 (1265)
T ss_pred eeecCCCCcEEEEecCCccc------cccccCCcccccchheeeecCCC-CceeeeecccccceEEEEEecCeEEEEEEE
Confidence 3 3466788887554321 11122223334458999999998 78877 4444559999988765433333
Q ss_pred eCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 379 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 379 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
..-..... +.|+|-..+-+..-..+|...++|+.
T Consensus 332 l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 332 LQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred Eecccccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence 32222222 77888655445544466666665553
No 304
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.69 E-value=4.4e-06 Score=74.98 Aligned_cols=233 Identities=11% Similarity=0.157 Sum_probs=149.6
Q ss_pred CCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEE
Q 013827 137 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 216 (436)
Q Consensus 137 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 216 (436)
..+||.|.+|++.... .|.+|+-.....+... .| ..|..+.|+|.+ ++|
T Consensus 38 ~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~----------------------------~~-~~V~~~~fSP~~-kYL 86 (561)
T COG5354 38 VSESPLGTYLFSEHAA-GVECWGGPSKAKLVRF----------------------------RH-PDVKYLDFSPNE-KYL 86 (561)
T ss_pred eeecCcchheehhhcc-ceEEccccchhheeee----------------------------ec-CCceecccCccc-cee
Confidence 3449999999988754 5789987755433221 23 458999999996 688
Q ss_pred EEEeCCC---------------cEEEEeCCCCeEEEEEcccCCC--eE-EEEEcCCCCCEEEEEECCCcEEEEecCCCCC
Q 013827 217 ASASADK---------------QVKIWDVAAGKCNLTLEHHTDK--VQ-AVAWNHHSPQILLSGSFDRSVVMKDARISTH 278 (436)
Q Consensus 217 ~s~~~dg---------------~v~vwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 278 (436)
.+-+..+ .+.+||+.++..+..+..-..+ .+ -+.|+-++ .+++-- ....+.++++ +...
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n~ 163 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDNI 163 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCcc
Confidence 8865543 4999999999999888765555 44 67888877 555443 4567899997 3322
Q ss_pred ccc-eEe-eeCCeeEEEeCCCCCc-EEEE-----EeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC
Q 013827 279 SGF-KWA-VAADVESLAWDPHAEH-SFVV-----SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 350 (436)
Q Consensus 279 ~~~-~~~-~~~~i~~~~~~~~~~~-~~~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 350 (436)
... ... ....+....|+|.+.. .++. .+..+.+++|.+... ..+.+..-....-..+.|++.|
T Consensus 164 ~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~---------s~l~tk~lfk~~~~qLkW~~~g 234 (561)
T COG5354 164 EEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN---------SVLVTKNLFKVSGVQLKWQVLG 234 (561)
T ss_pred ccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC---------CeeeeeeeEeecccEEEEecCC
Confidence 211 111 2366888899986322 2232 356788999998754 2222222222333568888888
Q ss_pred CCEEEEE-e----------CCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCc-EEEEEeCCCcEEEEeCCCC
Q 013827 351 PNLLATG-S----------TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF-VLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 351 ~~~l~~~-~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~ 416 (436)
.+|+.- - .+..++|+++..... .+ .. ...++|...+|.|.++. .+++|-.+-.+.++|+...
T Consensus 235 -~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V-~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 235 -KYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PV-EK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred -ceEEEEEEEeeecccceeccceEEEEeeccccc-ce-ec-cccccceeeeecccCCceeEEecccccceeecccccc
Confidence 444321 1 135678888875441 12 11 45779999999998764 2333456778888888765
No 305
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=1.4e-06 Score=82.40 Aligned_cols=188 Identities=17% Similarity=0.163 Sum_probs=132.4
Q ss_pred cccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCC
Q 013827 199 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 278 (436)
Q Consensus 199 h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 278 (436)
..+.++|++++. .+|+-|+.+|.|++++.+.. . .+...|+.. ..+| .++++|+.||+|.+-.+-+.+.
T Consensus 38 ~~D~is~~av~~---~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 38 QNDAISCCAVHD---KFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEG-EYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhhHHHHHHhhc---ceeeeccccceEEEEecCCc-c-ccccccccc------ccCC-ceEEEecCCCcEEEeeccCCcc
Confidence 356788888874 48999999999999997643 2 333335443 4566 8999999999999998877665
Q ss_pred ccceEeeeCCeeEEEeCCC----CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEE
Q 013827 279 SGFKWAVAADVESLAWDPH----AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 354 (436)
Q Consensus 279 ~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 354 (436)
.. ......++.+++++|+ ....+++|+.-| +.++.-+-... .....+....++|.++.|.- +++
T Consensus 106 ~~-~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-------k~~v~l~~~eG~I~~i~W~g---~lI 173 (846)
T KOG2066|consen 106 IT-QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-------KDSVVLSEGEGPIHSIKWRG---NLI 173 (846)
T ss_pred ce-eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-------ccceeeecCccceEEEEecC---cEE
Confidence 54 5667788999999997 345799999988 77776433211 11224666789999999983 788
Q ss_pred EEEeCCCcEEEEECCCCCceeEEeeCC----CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 355 ATGSTDKMVKLWDLSNNQPSCIASRNP----KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 355 ~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
|=++.+| |++||+.+.+.......+. .......+.|.++.+ |+.| ...+|+|..++
T Consensus 174 AWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 174 AWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIG-WGDSVKICSIK 233 (846)
T ss_pred EEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe--EEEe-cCCeEEEEEEe
Confidence 8777665 8999999877322222111 011245688998876 4444 44479999988
No 306
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.67 E-value=9.2e-08 Score=56.20 Aligned_cols=39 Identities=33% Similarity=0.646 Sum_probs=36.5
Q ss_pred CeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEe
Q 013827 233 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD 272 (436)
Q Consensus 233 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd 272 (436)
++++..+.+|...|++++|+|++ .+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 36788999999999999999998 9999999999999997
No 307
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=1.8e-07 Score=84.40 Aligned_cols=287 Identities=14% Similarity=0.139 Sum_probs=169.1
Q ss_pred CCCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCC-----ceeeecccccCcCcceeecccCCCCCCCC
Q 013827 68 KDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDP-----NLYVHHHIIIPAFPLCMAWLDCPLKDREK 142 (436)
Q Consensus 68 ~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 142 (436)
.-.+|++.|..++--.+.+-+++++.+. .+++|....+.++.. -.|..|..++.. + .|-.+
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDK---TVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~----i-------gfL~~ 795 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDK---TVKLWSIKPEGDEIGTSACQFTYQAHKKPIHD----I-------GFLAD 795 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCc---eEEEEEeccccCccccceeeeEhhhccCcccc----e-------eeeec
Confidence 4468899999988888888888888775 235555554443221 234445444432 2 22345
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEE-EEEeC
Q 013827 143 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL-ASASA 221 (436)
Q Consensus 143 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~ 221 (436)
-++++++ ||.|.+||---+..+....- ....+....|.|+.-- + +.++ +.++.
T Consensus 796 lr~i~Sc--D~giHlWDPFigr~Laq~~d----------------------apk~~a~~~ikcl~nv-~-~~iliAgcsa 849 (1034)
T KOG4190|consen 796 LRSIASC--DGGIHLWDPFIGRLLAQMED----------------------APKEGAGGNIKCLENV-D-RHILIAGCSA 849 (1034)
T ss_pred cceeeec--cCcceeecccccchhHhhhc----------------------CcccCCCceeEecccC-c-chheeeeccc
Confidence 6666654 89999999765444321100 0011223344444321 2 3344 44478
Q ss_pred CCcEEEEeCCCCeEEEEEc-----ccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCC
Q 013827 222 DKQVKIWDVAAGKCNLTLE-----HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 296 (436)
Q Consensus 222 dg~v~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~ 296 (436)
..+|+++|.+.++....++ +.+..+.+++..+.| +.++++-.+|.|.+.|.++++.+..-.........++- |
T Consensus 850 eSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-p 927 (1034)
T KOG4190|consen 850 ESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKG-NKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-P 927 (1034)
T ss_pred hhhheeeecccccceeeEEeccCCCCchheeEEEeccCc-chhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-c
Confidence 8899999999887666554 345668999999999 88999999999999999999876544444444444442 2
Q ss_pred CCCcEEEEEeCCCcEEE-EeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC-C--
Q 013827 297 HAEHSFVVSLEDGTIKG-FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN-Q-- 372 (436)
Q Consensus 297 ~~~~~~~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~-~-- 372 (436)
.+ +.++....|.++.+ |....+ ......+....+..-+ ..-| --|+++...+.+.+|.-... .
T Consensus 928 sd-q~L~~saldHslaVnWhaldg---------imh~q~kpppepahfl--qsvg-pSLV~a~~Gn~lgVYad~a~~ha~ 994 (1034)
T KOG4190|consen 928 SD-QALAQSALDHSLAVNWHALDG---------IMHLQDKPPPEPAHFL--QSVG-PSLVTAQNGNILGVYADSAELHAE 994 (1034)
T ss_pred hh-HHHHhhcccceeEeeehhcCC---------eeeeccCCCCcchhhh--hccC-ceeEEeccCcEEEEEecchhhhhh
Confidence 22 45666677777777 765544 1111111111111111 1123 35666666777788743211 1
Q ss_pred -ceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEE
Q 013827 373 -PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI 410 (436)
Q Consensus 373 -~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 410 (436)
...........+..++++-.|-+.. +..|...|.|.+
T Consensus 995 stitKiR~d~f~G~lTala~LPLN~a-fLaGne~G~IaL 1032 (1034)
T KOG4190|consen 995 STITKIRPDEFPGTLTALAPLPLNCA-FLAGNEHGAIAL 1032 (1034)
T ss_pred hhhccccccccCCccceeeeccccch-hhccCCCCceee
Confidence 0111122334567888998887774 556888888875
No 308
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.65 E-value=1.9e-08 Score=92.19 Aligned_cols=245 Identities=22% Similarity=0.270 Sum_probs=152.1
Q ss_pred ceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEE
Q 013827 128 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 207 (436)
Q Consensus 128 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 207 (436)
-|++|.. +.+...+++|..+|.|.+-.+...... ......+|...+++++
T Consensus 60 kcva~~y-----~~d~cIlavG~atG~I~l~s~r~~hdS-------------------------s~E~tp~~ar~Ct~lA 109 (783)
T KOG1008|consen 60 KCVASFY-----GNDRCILAVGSATGNISLLSVRHPHDS-------------------------SAEVTPGYARPCTSLA 109 (783)
T ss_pred eeehhhc-----CCchhhhhhccccCceEEeecCCcccc-------------------------cceecccccccccccc
Confidence 4666631 344567899999999999887542221 1112336889999999
Q ss_pred ecCCCCcEEEEEe----CCCcEEEEeCCCC--eEE--EEEcc-cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCC
Q 013827 208 WNKEFRNILASAS----ADKQVKIWDVAAG--KCN--LTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 278 (436)
Q Consensus 208 ~~~~~~~~l~s~~----~dg~v~vwd~~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 278 (436)
|++-+.+.||.|- .|..+.|||+.++ .+. ..+.. ......+++|..+. .++++|.....+.++|+|....
T Consensus 110 wneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~ 188 (783)
T KOG1008|consen 110 WNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLD 188 (783)
T ss_pred cccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhh
Confidence 9997667887773 3567999999876 221 12222 33456688999776 8889999999999999984332
Q ss_pred ccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEe-CCCCCCCCCCCCCcccEEEec----cCCCeEEEEecCCCCCE
Q 013827 279 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD-IRTAKSDPDSTSQQSSFTLHA----HDKAVCTISYNPLVPNL 353 (436)
Q Consensus 279 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~~ 353 (436)
.... -....+..+..+|-..+++++. .||.|.+|| .++.+ .++..+.. ....+..++|+|..+.+
T Consensus 189 ~~~s-vnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnie--------npl~~i~~~~N~~~~~l~~~aycPtrtgl 258 (783)
T KOG1008|consen 189 SVSS-VNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIE--------NPLQIILRNENKKPKQLFALAYCPTRTGL 258 (783)
T ss_pred hhhh-hhhhhcccceecCCCCCceecc-ccCceeeccchhhhc--------cHHHHHhhCCCCcccceeeEEeccCCcch
Confidence 2111 1122355566677444555544 499999999 44432 22222221 22358999999987778
Q ss_pred EEEEeCC-CcEEEEECCCCC--------ceeEE----eeCC--CCCcEEEEEEcCCC-CcEEEEEeCCCcEEEEeC
Q 013827 354 LATGSTD-KMVKLWDLSNNQ--------PSCIA----SRNP--KAGAVFSVAFSEDS-PFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 354 l~~~~~d-~~i~iwd~~~~~--------~~~~~----~~~~--~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~ 413 (436)
+++...| ++|+++|+.... ..... .++. ....|.+..|++.. .....++-..-.+.-+++
T Consensus 259 la~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V 334 (783)
T KOG1008|consen 259 LAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSV 334 (783)
T ss_pred hhhhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccc
Confidence 8887775 679999986421 00111 1121 23568888888765 223444555555555554
No 309
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.64 E-value=3.5e-05 Score=66.54 Aligned_cols=228 Identities=14% Similarity=0.089 Sum_probs=137.7
Q ss_pred CC-CCcEEEEeeCCCc-EEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEE
Q 013827 140 RE-KGNFMAVGSMEPA-IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 217 (436)
Q Consensus 140 s~-~~~~l~~g~~dg~-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 217 (436)
+| ++..++.+-.-|+ ..+||..+++...... ...-..|.+| -.|+++|+ +|+
T Consensus 13 ~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-------------------a~~gRHFyGH------g~fs~dG~-~Ly 66 (305)
T PF07433_consen 13 HPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-------------------APPGRHFYGH------GVFSPDGR-LLY 66 (305)
T ss_pred CCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-------------------CCCCCEEecC------EEEcCCCC-EEE
Confidence 66 5666777776665 6788988777654321 1222234455 46999985 666
Q ss_pred EEeC-----CCcEEEEeCC-CCeEEEEEcccCCCeEEEEEcCCCCCEEEEEEC------------------CCcEEEEec
Q 013827 218 SASA-----DKQVKIWDVA-AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF------------------DRSVVMKDA 273 (436)
Q Consensus 218 s~~~-----dg~v~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~------------------d~~i~~wd~ 273 (436)
+.-. .|.|-|||.. +-+.+.++..|.-....+.+.|++ ..|+++.. +..+.+.|.
T Consensus 67 tTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG-~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~ 145 (305)
T PF07433_consen 67 TTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDG-ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA 145 (305)
T ss_pred EeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCC-CEEEEEcCCCccCcccCceecChhhcCCceEEEec
Confidence 6533 4789999998 667888888888788889999999 56666531 234455556
Q ss_pred CCCCCccce----EeeeCCeeEEEeCCCCCcEEEEEe-CCC-------cEEEEeCCCCCCCCCCCCCcccEEEeccCCCe
Q 013827 274 RISTHSGFK----WAVAADVESLAWDPHAEHSFVVSL-EDG-------TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 341 (436)
Q Consensus 274 ~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~-~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 341 (436)
.+++..... ..+...+..+++.++|. ++.+. ..| -|.+++....-... ..+......-...+
T Consensus 146 ~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~--V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~----~~p~~~~~~l~~Y~ 219 (305)
T PF07433_consen 146 RSGALLEQVELPPDLHQLSIRHLAVDGDGT--VAFAMQYQGDPGDAPPLVALHRRGGALRLL----PAPEEQWRRLNGYI 219 (305)
T ss_pred CCCceeeeeecCccccccceeeEEecCCCc--EEEEEecCCCCCccCCeEEEEcCCCcceec----cCChHHHHhhCCce
Confidence 666554321 12556789999998763 33332 111 13333322210000 00001112345778
Q ss_pred EEEEecCCCCCEE-EEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcE
Q 013827 342 CTISYNPLVPNLL-ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKL 408 (436)
Q Consensus 342 ~~~~~~p~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 408 (436)
-+|++++++ .++ +|+=..+.+.+||..+++......+. .+..++-.+++ ++++.+ .|.+
T Consensus 220 gSIa~~~~g-~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~----D~cGva~~~~~--f~~ssG-~G~~ 279 (305)
T PF07433_consen 220 GSIAADRDG-RLIAVTSPRGGRVAVWDAATGRLLGSVPLP----DACGVAPTDDG--FLVSSG-QGQL 279 (305)
T ss_pred EEEEEeCCC-CEEEEECCCCCEEEEEECCCCCEeeccccC----ceeeeeecCCc--eEEeCC-CccE
Confidence 999999998 555 55555788999999999843332222 46677777777 355444 3443
No 310
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=3.3e-06 Score=80.42 Aligned_cols=106 Identities=17% Similarity=0.240 Sum_probs=83.9
Q ss_pred CCCCCCcEEEEeeC----CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCC
Q 013827 138 KDREKGNFMAVGSM----EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR 213 (436)
Q Consensus 138 ~~s~~~~~l~~g~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 213 (436)
.|+|...+||+++. .|.|.||- +++++.... ...-.+++++|+|. .
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V----------------------------t~P~hatSLCWHpe-~ 71 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV----------------------------TYPVHATSLCWHPE-E 71 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc----------------------------ccceehhhhccChH-H
Confidence 34999999999874 48888884 444432211 12234667999998 5
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC
Q 013827 214 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 274 (436)
Q Consensus 214 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 274 (436)
-.|+.|-.-|.+.+|...+.+.-.....|..+|..+.|+++| ..++++..-|.+.+|...
T Consensus 72 ~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 72 FVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred HHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence 688999999999999988877666667799999999999999 899999999999999765
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.59 E-value=5.7e-05 Score=65.28 Aligned_cols=206 Identities=14% Similarity=0.089 Sum_probs=132.5
Q ss_pred eeEEEecCCCCcEEEEEeCCCc-EEEEeCCCCeEEEEEcccCCCe--EEEEEcCCCCCEEEEEEC-----CCcEEEEecC
Q 013827 203 VLGLAWNKEFRNILASASADKQ-VKIWDVAAGKCNLTLEHHTDKV--QAVAWNHHSPQILLSGSF-----DRSVVMKDAR 274 (436)
Q Consensus 203 v~~~~~~~~~~~~l~s~~~dg~-v~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~s~~~-----d~~i~~wd~~ 274 (436)
...++.+|.....++.+-.-|+ ..+||..+++....+....+.- ---.|+++| .+|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG-~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG-RLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC-CEEEEeccccCCCcEEEEEEECc
Confidence 4467888966678888888775 7899999998877764322221 125799999 67766543 4789999998
Q ss_pred -CCCCccceEeeeCCeeEEEeCCCCCcEEEEEeC-----------------CCcEEEEeCCCCCCCCCCCCCcccEE--E
Q 013827 275 -ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-----------------DGTIKGFDIRTAKSDPDSTSQQSSFT--L 334 (436)
Q Consensus 275 -~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------------dg~i~i~d~~~~~~~~~~~~~~~~~~--~ 334 (436)
.-..+.....+.-....+.+.|+++.+++.-+. +.++...|..++ ..+.. +
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG---------~ll~q~~L 156 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG---------ALLEQVEL 156 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC---------ceeeeeec
Confidence 444444455566667888899988554444221 123344444444 22222 3
Q ss_pred --eccCCCeEEEEecCCCCCEEEEEeCCCc-------EEEEECCCCCceeEEeeC-----CCCCcEEEEEEcCCCCcEEE
Q 013827 335 --HAHDKAVCTISYNPLVPNLLATGSTDKM-------VKLWDLSNNQPSCIASRN-----PKAGAVFSVAFSEDSPFVLA 400 (436)
Q Consensus 335 --~~~~~~v~~~~~~p~~~~~l~~~~~d~~-------i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~ 400 (436)
..|...|..+++.++| ..++..-..|. |.+++.... ....... .-.+.+-++++++++..+.+
T Consensus 157 p~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ 233 (305)
T PF07433_consen 157 PPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV 233 (305)
T ss_pred CccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEE
Confidence 3477789999999987 55554443332 333333221 1111111 22356889999999997667
Q ss_pred EEeCCCcEEEEeCCCCccccc
Q 013827 401 IGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 401 s~~~dg~i~iwd~~~~~~~~~ 421 (436)
|+=..+.+.+||..+++.+..
T Consensus 234 tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 234 TSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred ECCCCCEEEEEECCCCCEeec
Confidence 777788999999999988754
No 312
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.58 E-value=3.8e-08 Score=93.51 Aligned_cols=200 Identities=17% Similarity=0.221 Sum_probs=136.8
Q ss_pred CCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 139 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 139 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
|+-+.++|+.|+..|.|+++++.++..... ..+|..+|+-+.-+.+|...|.+
T Consensus 1109 fs~~~~hL~vG~~~Geik~~nv~sG~~e~s---------------------------~ncH~SavT~vePs~dgs~~Lts 1161 (1516)
T KOG1832|consen 1109 FSGGTNHLAVGSHAGEIKIFNVSSGSMEES---------------------------VNCHQSAVTLVEPSVDGSTQLTS 1161 (1516)
T ss_pred eecCCceEEeeeccceEEEEEccCcccccc---------------------------ccccccccccccccCCcceeeee
Confidence 388999999999999999999998877654 45899999999999998766666
Q ss_pred EeCCC-cEEEEeCCC-CeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE----eeeCCeeEE
Q 013827 219 ASADK-QVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----AVAADVESL 292 (436)
Q Consensus 219 ~~~dg-~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~----~~~~~i~~~ 292 (436)
++... ...+|++.. +...+++. .-.++.|+... ..-+.|.......+||+.+........ .....-+.+
T Consensus 1162 ss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1162 SSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred ccccCchHHHhccccccCcccccc----ccceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccc
Confidence 65555 578999864 34445554 23567888765 445566666788999999987665432 223345788
Q ss_pred EeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 013827 293 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 293 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
.|+|++. +++ .|| -+||.+.. +.+..+......+ .-.|+|.| .-++.-+ .|||+++.+
T Consensus 1237 ~FsP~D~-LIl---ndG--vLWDvR~~---------~aIh~FD~ft~~~-~G~FHP~g-~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1237 HFSPCDT-LIL---NDG--VLWDVRIP---------EAIHRFDQFTDYG-GGGFHPSG-NEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred ccCCCcc-eEe---eCc--eeeeeccH---------HHHhhhhhheecc-cccccCCC-ceEEeec-----hhhhhHHHH
Confidence 8999874 444 344 47999986 4455554444222 34699998 6666654 489999876
Q ss_pred ceeEEeeCCCCCcEEEEEEcCCCC
Q 013827 373 PSCIASRNPKAGAVFSVAFSEDSP 396 (436)
Q Consensus 373 ~~~~~~~~~~~~~v~~~~~~~~~~ 396 (436)
. +...+.- .-..+.|+..|.
T Consensus 1295 l--Lh~VP~L--dqc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1295 L--LHSVPSL--DQCAVTFNSTGD 1314 (1516)
T ss_pred H--HhcCccc--cceEEEeccCcc
Confidence 2 2222221 123566766665
No 313
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.58 E-value=3.4e-05 Score=66.61 Aligned_cols=183 Identities=17% Similarity=0.143 Sum_probs=113.3
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeee-C-----
Q 013827 214 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA-A----- 287 (436)
Q Consensus 214 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~----- 287 (436)
..+++++.++.+..||..+|+.+..+.. ...+...... .+ ..++.++.++.+..+|..+++..-...... .
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~-~~-~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV-DG-GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE-ET-TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee-cc-cccccccceeeeEecccCCcceeeeeccccccccccc
Confidence 3677778999999999999998877764 2222111122 22 456777788899999988888765422211 1
Q ss_pred CeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCC-----------eEEEEecCCCCCEEEE
Q 013827 288 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA-----------VCTISYNPLVPNLLAT 356 (436)
Q Consensus 288 ~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-----------v~~~~~~p~~~~~l~~ 356 (436)
......+. + ..++++..++.|..+|++++ +.+......... ...+.+. + ..++.
T Consensus 114 ~~~~~~~~--~-~~~~~~~~~g~l~~~d~~tG---------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~v~~ 178 (238)
T PF13360_consen 114 SSSSPAVD--G-DRLYVGTSSGKLVALDPKTG---------KLLWKYPVGEPRGSSPISSFSDINGSPVIS--D-GRVYV 178 (238)
T ss_dssp --SEEEEE--T-TEEEEEETCSEEEEEETTTT---------EEEEEEESSTT-SS--EEEETTEEEEEECC--T-TEEEE
T ss_pred cccCceEe--c-CEEEEEeccCcEEEEecCCC---------cEEEEeecCCCCCCcceeeecccccceEEE--C-CEEEE
Confidence 11222222 3 56788888999999999988 444444443311 1223333 2 36777
Q ss_pred EeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccc
Q 013827 357 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 420 (436)
Q Consensus 357 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (436)
++.++.+..+|+.+++.. .... ...+..+ ...++.. |+.++.++.|..||+.+++.+-
T Consensus 179 ~~~~g~~~~~d~~tg~~~--w~~~--~~~~~~~-~~~~~~~-l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 179 SSGDGRVVAVDLATGEKL--WSKP--ISGIYSL-PSVDGGT-LYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp ECCTSSEEEEETTTTEEE--EEEC--SS-ECEC-EECCCTE-EEEEETTTEEEEEETTTTEEEE
T ss_pred EcCCCeEEEEECCCCCEE--EEec--CCCccCC-ceeeCCE-EEEEeCCCEEEEEECCCCCEEe
Confidence 777775434499998732 3333 2223332 3455553 5556689999999999998764
No 314
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.56 E-value=2.2e-07 Score=54.58 Aligned_cols=38 Identities=32% Similarity=0.679 Sum_probs=35.4
Q ss_pred cccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 013827 329 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 367 (436)
Q Consensus 329 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd 367 (436)
+++..+.+|...|++++|+|++ .+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 4578899999999999999997 9999999999999997
No 315
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=8.6e-06 Score=77.83 Aligned_cols=202 Identities=13% Similarity=0.206 Sum_probs=133.6
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
++.+..+|.|+.+|.|.+.+-. ......+..+...|...-+.-++.++|++.
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~s----------------------------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv 83 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNSS----------------------------FQLIRGFQAYEQSIVQFLYILNKQNFLFSV 83 (933)
T ss_pred cCCCceEEEeeccccEEEeccc----------------------------ceeeehheecchhhhhHhhcccCceEEEEE
Confidence 7889999999999999888743 223233555666633333444445688888
Q ss_pred eCCCc-----EEEEeCCCC------eEE--EEEcc-----cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC--CC--
Q 013827 220 SADKQ-----VKIWDVAAG------KCN--LTLEH-----HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI--ST-- 277 (436)
Q Consensus 220 ~~dg~-----v~vwd~~~~------~~~--~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~--~~-- 277 (436)
+.|+. ++||+++.. .++ ..+.. ...++.+++.+.+- ..+|.|-.+|.|..+.-.- .+
T Consensus 84 ~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgs 162 (933)
T KOG2114|consen 84 GEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGS 162 (933)
T ss_pred eecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhcccc
Confidence 77754 899998643 233 11211 35678899999887 8899999999998885321 11
Q ss_pred CccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEE
Q 013827 278 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG 357 (436)
Q Consensus 278 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 357 (436)
..........+|+.+++..++...+++++ ...|.+|.+... ......+..|...+.|..+++..+.+++++
T Consensus 163 r~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr--------~p~~~~ld~~G~~lnCss~~~~t~qfIca~ 233 (933)
T KOG2114|consen 163 RQDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGR--------TPSLKVLDNNGISLNCSSFSDGTYQFICAG 233 (933)
T ss_pred ceeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCC--------CcceeeeccCCccceeeecCCCCccEEEec
Confidence 22223345678999999988765444443 446889998844 122445777888999999998663344443
Q ss_pred eCCCcEEEEECCCCCceeEEeeC-CCC
Q 013827 358 STDKMVKLWDLSNNQPSCIASRN-PKA 383 (436)
Q Consensus 358 ~~d~~i~iwd~~~~~~~~~~~~~-~~~ 383 (436)
+..+.+|+....++ .+.+. +|.
T Consensus 234 --~e~l~fY~sd~~~~--cfaf~~g~k 256 (933)
T KOG2114|consen 234 --SEFLYFYDSDGRGP--CFAFEVGEK 256 (933)
T ss_pred --CceEEEEcCCCcce--eeeecCCCe
Confidence 34699999887663 33444 444
No 316
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.53 E-value=3.1e-05 Score=72.65 Aligned_cols=288 Identities=10% Similarity=0.130 Sum_probs=172.0
Q ss_pred hhcccceeeec-----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEEec
Q 013827 20 YHSCFRCHKIS-----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNE 94 (436)
Q Consensus 20 ~~~~~~~~~~~-----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~ 94 (436)
+.|..|....+ +.||...+-.+.....-....+++-...-. .....++|++.|.-+.|+.+...|.+...+
T Consensus 17 L~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLs----mNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 17 LHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLS----MNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred EEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccc----hhhhhccCcceEEEEEeccccccccccCCC
Confidence 46788886555 788887777665443322222222111111 111235899999999999999999887766
Q ss_pred CCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecc
Q 013827 95 DDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG 174 (436)
Q Consensus 95 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~ 174 (436)
+- +-||..-.+.-. ..+ -...-.+.+.++.| +.||..++..-.||.|.|=.++........
T Consensus 93 Gl---IiVWmlykgsW~-EEM---iNnRnKSvV~SmsW-------n~dG~kIcIvYeDGavIVGsvdGNRIwgKe----- 153 (1189)
T KOG2041|consen 93 GL---IIVWMLYKGSWC-EEM---INNRNKSVVVSMSW-------NLDGTKICIVYEDGAVIVGSVDGNRIWGKE----- 153 (1189)
T ss_pred ce---EEEEeeecccHH-HHH---hhCcCccEEEEEEE-------cCCCcEEEEEEccCCEEEEeeccceecchh-----
Confidence 52 244432211100 000 01112344556778 789999999999999988777643322110
Q ss_pred cchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC-------eEEE----EEcccC
Q 013827 175 IDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNL----TLEHHT 243 (436)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~-------~~~~----~~~~~~ 243 (436)
+++ .-...+.|++|. ..++.+-..|.+.+||.+.. .+.. .+....
T Consensus 154 ---------------------Lkg--~~l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~ 209 (1189)
T KOG2041|consen 154 ---------------------LKG--QLLAHVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFP 209 (1189)
T ss_pred ---------------------cch--heccceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCC
Confidence 111 123468899995 46666777899999997643 1111 122223
Q ss_pred CCeEEEEEc--------CCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCC-------
Q 013827 244 DKVQAVAWN--------HHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED------- 308 (436)
Q Consensus 244 ~~v~~~~~~--------~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d------- 308 (436)
..|-.+.|. |+. ..|+.+-..|.+.+-.-.....+. ....+-.+..+.|+++|. .+++++.+
T Consensus 210 ~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr~QiMR~eND~~Pv-v~dtgm~~vgakWnh~G~-vLAvcG~~~da~~~~ 286 (1189)
T KOG2041|consen 210 TKIAEIEWNTGPYQPVPPDR-PRLAVCYANGRMQIMRSENDPEPV-VVDTGMKIVGAKWNHNGA-VLAVCGNDSDADEPT 286 (1189)
T ss_pred ccccceeeccCccccCCCCC-CEEEEEEcCceehhhhhcCCCCCe-EEecccEeecceecCCCc-EEEEccCcccccCcc
Confidence 346667764 344 678999999998886544443333 445557789999999985 66666543
Q ss_pred --CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 013827 309 --GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 369 (436)
Q Consensus 309 --g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~ 369 (436)
+.|.+|..- ...+.+++.....|+++.|-..| -.++. ..|+.|++=+++
T Consensus 287 d~n~v~Fysp~----------G~i~gtlkvpg~~It~lsWEg~g-LriA~-AvdsfiyfanIR 337 (1189)
T KOG2041|consen 287 DSNKVHFYSPY----------GHIVGTLKVPGSCITGLSWEGTG-LRIAI-AVDSFIYFANIR 337 (1189)
T ss_pred ccceEEEeccc----------hhheEEEecCCceeeeeEEcCCc-eEEEE-EecceEEEEeec
Confidence 245555432 24466777778889999988755 33333 235555554443
No 317
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=8.9e-07 Score=77.01 Aligned_cols=167 Identities=18% Similarity=0.212 Sum_probs=114.3
Q ss_pred EEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEE
Q 013827 225 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV 304 (436)
Q Consensus 225 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 304 (436)
+++.+..+.+....+..+...|.+++|+|....++..++.+..|.+.|+++.........+ ..+.+++|+-+..+.+.+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 6666665656666677888999999999988558999999999999999988777644444 889999999999999999
Q ss_pred EeCCCcEEEEeCCCCCCCCCCCCCcccEEEec--cCCCeEEEE------ecCCCCCEEEEEeCCCcEEEEECCCC--Cce
Q 013827 305 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTIS------YNPLVPNLLATGSTDKMVKLWDLSNN--QPS 374 (436)
Q Consensus 305 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~------~~p~~~~~l~~~~~d~~i~iwd~~~~--~~~ 374 (436)
|..+|.|.+||++.... +...+.+ ...+|..++ ..+.+ .+|+....+ +..|++... .+.
T Consensus 254 Gl~nG~VlvyD~R~~~~--------~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~lt~--l~f~ei~~s~~~~p 322 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEG--------PLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFALTV--LQFYEIVFSAECLP 322 (463)
T ss_pred eccCceEEEEEccCCCc--------hHhhhhhhhccCcceeecccCcccccccc-ceEEeeehh--hhhhhhhccccCCC
Confidence 99999999999998742 2222211 123333332 23334 456555554 455655432 222
Q ss_pred eEEeeCCCCCcEEEEEEcCCCCcEEEEEeC
Q 013827 375 CIASRNPKAGAVFSVAFSEDSPFVLAIGGS 404 (436)
Q Consensus 375 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 404 (436)
++.... ..+...+++..+..+++|++.-.
T Consensus 323 ~vlele-~pG~cismqy~~~snh~l~tyRs 351 (463)
T KOG1645|consen 323 CVLELE-PPGICISMQYHGVSNHLLLTYRS 351 (463)
T ss_pred cccccC-CCcceeeeeecCccceEEEEecC
Confidence 333332 34567777887766767776655
No 318
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=1e-05 Score=77.24 Aligned_cols=115 Identities=14% Similarity=0.299 Sum_probs=80.5
Q ss_pred ccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCc
Q 013827 75 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA 154 (436)
Q Consensus 75 ~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 154 (436)
.-+-..|+|..+++|+++.... +...|.+|-.... + ..+...|-.+.++.| +|..-.|+.|-.-|.
T Consensus 17 vsti~SWHPsePlfAVA~fS~e-r~GSVtIfadtGE--P----qr~Vt~P~hatSLCW-------Hpe~~vLa~gwe~g~ 82 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPE-RGGSVTIFADTGE--P----QRDVTYPVHATSLCW-------HPEEFVLAQGWEMGV 82 (1416)
T ss_pred cccccccCCCCceeEEEEecCC-CCceEEEEecCCC--C----Ccccccceehhhhcc-------ChHHHHHhhccccce
Confidence 3345789999999999976532 2234555533221 0 111222333345666 899999999999999
Q ss_pred EEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCC
Q 013827 155 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 231 (436)
Q Consensus 155 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~ 231 (436)
+.||...+.+... ....|..+|..+.|+++| +.|+++..-|.|.+|...
T Consensus 83 ~~v~~~~~~e~ht---------------------------v~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 83 SDVQKTNTTETHT---------------------------VVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eEEEecCCceeee---------------------------eccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence 9999986533221 133699999999999997 599999999999999876
No 319
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.50 E-value=8.6e-05 Score=68.07 Aligned_cols=273 Identities=14% Similarity=0.159 Sum_probs=143.9
Q ss_pred ccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccc----cC---------cCcceeecccCCCCC
Q 013827 73 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHII----IP---------AFPLCMAWLDCPLKD 139 (436)
Q Consensus 73 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~~---------~~~~~~~~~~~~~~~ 139 (436)
...+....|||+|+.+|..... .|++.+...+....+...-... ++ .....+- |
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~~------nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~-------W 108 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRDN------NLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVW-------W 108 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEETT------EEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEE-------E
T ss_pred ccccccceeecCCCeeEEEecC------ceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceE-------E
Confidence 5678899999999999998643 7888876554222121111000 00 1112233 4
Q ss_pred CCCCcEEEEeeCC-CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 140 REKGNFMAVGSME-PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 140 s~~~~~l~~g~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
|||+++||....| ..|..+.+....... +.--.+..+.+-.-|... ..
T Consensus 109 Spd~~~la~~~~d~~~v~~~~~~~~~~~~------------------------------~~yp~~~~~~YPk~G~~n-p~ 157 (353)
T PF00930_consen 109 SPDSKYLAFLRFDEREVPEYPLPDYSPPD------------------------------SQYPEVESIRYPKAGDPN-PR 157 (353)
T ss_dssp -TTSSEEEEEEEE-TTS-EEEEEEESSST------------------------------ESS-EEEEEE--BTTS----E
T ss_pred CCCCCEEEEEEECCcCCceEEeeccCCcc------------------------------ccCCcccccccCCCCCcC-Cc
Confidence 9999999988654 555555442111000 000134444443223211 11
Q ss_pred EeCCCcEEEEeCCCCeEEE-E-E---cccCCCeEEEEEcCCCCC-EEE-EEECCC---cEEEEecCCCCCccceEee-eC
Q 013827 219 ASADKQVKIWDVAAGKCNL-T-L---EHHTDKVQAVAWNHHSPQ-ILL-SGSFDR---SVVMKDARISTHSGFKWAV-AA 287 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~~~-~-~---~~~~~~v~~~~~~~~~~~-~l~-s~~~d~---~i~~wd~~~~~~~~~~~~~-~~ 287 (436)
-.+.|+|+.+++... . . ..-...+..+.|.+++ . +++ ..+.+. .+.++|..++......... ..
T Consensus 158 ----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~-~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~ 232 (353)
T PF00930_consen 158 ----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDG-KRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDG 232 (353)
T ss_dssp ----EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETT-EEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSS
T ss_pred ----eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCC-cEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCc
Confidence 247778888876532 1 1 1235578899999998 5 333 233332 4667787765544322222 22
Q ss_pred C---eeEEEeC-CCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEE-EEecCCCCCEEEEEeCCC-
Q 013827 288 D---VESLAWD-PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT-ISYNPLVPNLLATGSTDK- 361 (436)
Q Consensus 288 ~---i~~~~~~-~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~~~~~d~- 361 (436)
. .....+. +++..++.....+|.-+||-+.... .....+....-.|.. +.+++++..+..++..++
T Consensus 233 Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~--------~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p 304 (353)
T PF00930_consen 233 WVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDG--------GKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNP 304 (353)
T ss_dssp SSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTS--------SEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGT
T ss_pred ceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccc--------cceeccccCceeecccceEcCCCCEEEEEecCCCC
Confidence 2 2345554 7777777777788876666554431 223344444555644 678888755666666533
Q ss_pred ---cEEEEECC-CCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCC
Q 013827 362 ---MVKLWDLS-NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 405 (436)
Q Consensus 362 ---~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 405 (436)
.++.-++. .+. ...+....+.-..+.|||++++++.+++.-
T Consensus 305 ~~r~lY~v~~~~~~~---~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 305 GERHLYRVSLDSGGE---PKCLTCEDGDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp TSBEEEEEETTETTE---EEESSTTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred CceEEEEEEeCCCCC---eEeccCCCCCceEEEECCCCCEEEEEEcCC
Confidence 45555666 444 333333332236899999999877766643
No 320
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=8.4e-08 Score=91.23 Aligned_cols=208 Identities=16% Similarity=0.146 Sum_probs=140.6
Q ss_pred ccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCC-cE
Q 013827 190 SSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-SV 268 (436)
Q Consensus 190 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-~i 268 (436)
.+....+..|....+|++|+-.. ++|+.|+..|.|+++++.+|........|+++|+-+.-+.+|...|.+++... -.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 44455667889999999999984 69999999999999999999999999999999999999999944444444444 46
Q ss_pred EEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecC
Q 013827 269 VMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP 348 (436)
Q Consensus 269 ~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 348 (436)
.+|++.........+ ..-.++.|+... ..-+.|+......+||+.+...... ......+....-++..|+|
T Consensus 1170 aLW~~~s~~~~~Hsf---~ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~t-----ylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSF---DEDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQT-----YLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred HHhccccccCccccc---cccceeehhhhH-HHHHhcccccceEEEecccCcHHHH-----hcCcchhhhhhccccccCC
Confidence 789987633322111 234567777653 4556666667889999998832111 0001111222337789999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 349 LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 349 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
+. .+++ .|| .+||++..+ .+..+..... --.-.|+|.|..+++ - -.|||+++-+.++..
T Consensus 1241 ~D-~LIl---ndG--vLWDvR~~~--aIh~FD~ft~-~~~G~FHP~g~eVII-N-----SEIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1241 CD-TLIL---NDG--VLWDVRIPE--AIHRFDQFTD-YGGGGFHPSGNEVII-N-----SEIWDMRTFKLLHSV 1299 (1516)
T ss_pred Cc-ceEe---eCc--eeeeeccHH--HHhhhhhhee-cccccccCCCceEEe-e-----chhhhhHHHHHHhcC
Confidence 87 6664 455 479999875 3333332221 112369999986444 3 358999888777654
No 321
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.49 E-value=6.6e-05 Score=63.92 Aligned_cols=205 Identities=15% Similarity=0.159 Sum_probs=117.1
Q ss_pred cCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEccc-CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC
Q 013827 197 GSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 275 (436)
Q Consensus 197 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 275 (436)
.+-...+.+|+|.|+...++++....+.|..++. +|+.++.+.-. .+..-.+++..++ .++++.-.++.+.++++..
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNG-RYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STT-EEEEEETTTTEEEEEEE--
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCC-EEEEEEcCCCcEEEEEEec
Confidence 3555679999999986678888888899988886 47777777433 3567889998777 6666655689999998844
Q ss_pred CCCccc-----eE------eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEE------EeccC
Q 013827 276 STHSGF-----KW------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT------LHAHD 338 (436)
Q Consensus 276 ~~~~~~-----~~------~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~------~~~~~ 338 (436)
...... .. ..+..+..++|+|.+..++ ++-+..-..+|.+....... ...... .....
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPGGF----DLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT-SS------EEEE-HHHH-HT--S
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccCcc----ceeecccccccccccee
Confidence 322110 01 1334589999999875444 55566666777766421000 000111 11233
Q ss_pred CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCC-------CCcEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 013827 339 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK-------AGAVFSVAFSEDSPFVLAIGGSKGKLEIW 411 (436)
Q Consensus 339 ~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 411 (436)
..+.++.++|..+++++.......|..+| ..+++.....+... -...-.|+|.++|. +++ .+.-+.+++|
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYI-VSEPNLFYRF 247 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEE-EETTTEEEEE
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEE-EcCCceEEEe
Confidence 45789999998767888888888899999 45555445555431 12467899999997 455 5566666655
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=2.9e-05 Score=74.35 Aligned_cols=201 Identities=12% Similarity=0.125 Sum_probs=130.2
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCc-----EEEEecCCC
Q 013827 202 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS-----VVMKDARIS 276 (436)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~-----i~~wd~~~~ 276 (436)
.|.| |++.+ ..++.|+.+|.|.+.+ +.-+.++.++.+...+...-|.-++..+|++.+.|+. +++||+...
T Consensus 27 ~isc--~~s~~-~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 27 AISC--CSSST-GSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred ceeE--EcCCC-ceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 4444 45654 5899999999999887 3344456777776663333344444378888877764 899998754
Q ss_pred CC---ccce-----Ee-----eeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEE
Q 013827 277 TH---SGFK-----WA-----VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT 343 (436)
Q Consensus 277 ~~---~~~~-----~~-----~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 343 (436)
+. +... .+ .+.++.+++.+.+- +.+|+|..+|.|..+.-.-... ......-......+|+.
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RD-----rgsr~~~~~~~~~pITg 176 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRD-----RGSRQDYSHRGKEPITG 176 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhc-----cccceeeeccCCCCcee
Confidence 21 2111 11 24567788888864 7899999999999985321110 01112223345689999
Q ss_pred EEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 344 ISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 344 ~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
+++..++...+.+++ -..|.+|.+.... ........|..+++|-.+++.... +++++ +..+.+|+....
T Consensus 177 L~~~~d~~s~lFv~T-t~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~q-fIca~-~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 177 LALRSDGKSVLFVAT-TEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQ-FICAG-SEFLYFYDSDGR 245 (933)
T ss_pred eEEecCCceeEEEEe-cceeEEEEecCCC-cceeeeccCCccceeeecCCCCcc-EEEec-CceEEEEcCCCc
Confidence 999998844333333 4479999998554 345557778889999999987664 44333 346999987643
No 323
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=2.6e-05 Score=74.09 Aligned_cols=181 Identities=16% Similarity=0.169 Sum_probs=120.6
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 221 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 221 (436)
.+++|+-|+-+|.|++.+.+..- .....|+.. ..+| .+++||+.
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~~-----------------------------~~~~~~s~~------~~~G-ey~asCS~ 91 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGNP-----------------------------KTNFDHSSS------ILEG-EYVASCSD 91 (846)
T ss_pred hcceeeeccccceEEEEecCCcc-----------------------------ccccccccc------ccCC-ceEEEecC
Confidence 47889999999999999876321 001124333 4455 59999999
Q ss_pred CCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCC----CCCEEEEEECCCcEEEEecCCCC--CccceEeeeCCeeEEEeC
Q 013827 222 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH----SPQILLSGSFDRSVVMKDARIST--HSGFKWAVAADVESLAWD 295 (436)
Q Consensus 222 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~i~~~~~~ 295 (436)
||+|.|-.+-+.+....+. ...++.+++++|+ ....+++|+.-| +.++.-+-.. .........++|.++.|.
T Consensus 92 DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~ 169 (846)
T KOG2066|consen 92 DGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR 169 (846)
T ss_pred CCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec
Confidence 9999999998887776665 4578999999998 235789999988 7776543221 112244567899999997
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 013827 296 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 296 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~ 370 (436)
. ++++-++++| |++||..+.+.....+... ...........+.|.+.. .|+.| ...+|+|..++.
T Consensus 170 g---~lIAWand~G-v~vyd~~~~~~l~~i~~p~---~~~R~e~fpphl~W~~~~--~LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 170 G---NLIAWANDDG-VKVYDTPTRQRLTNIPPPS---QSVRPELFPPHLHWQDED--RLVIG-WGDSVKICSIKK 234 (846)
T ss_pred C---cEEEEecCCC-cEEEeccccceeeccCCCC---CCCCcccCCCceEecCCC--eEEEe-cCCeEEEEEEec
Confidence 4 5777777665 8999998874322211111 000111223567888754 44444 455788888873
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.43 E-value=9.9e-05 Score=73.54 Aligned_cols=232 Identities=15% Similarity=0.189 Sum_probs=132.9
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
..+.+-++.+...|.|.+-|..+..... ...-...|.+++|+||+ ..++..
T Consensus 77 l~d~~~i~v~~~~G~iilvd~et~~~ei----------------------------vg~vd~GI~aaswS~De-e~l~li 127 (1265)
T KOG1920|consen 77 LADTNSICVITALGDIILVDPETLELEI----------------------------VGNVDNGISAASWSPDE-ELLALI 127 (1265)
T ss_pred ecccceEEEEecCCcEEEEcccccceee----------------------------eeeccCceEEEeecCCC-cEEEEE
Confidence 5678888888999999998876544332 11346789999999996 588888
Q ss_pred eCCCcEEEEeCCCCeEEEEEcc-----cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEe
Q 013827 220 SADKQVKIWDVAAGKCNLTLEH-----HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW 294 (436)
Q Consensus 220 ~~dg~v~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~ 294 (436)
+..+++.+-. .+-.++..-.- ..+....+-|-... .. +.|+ .|.....+................-+++.|
T Consensus 128 T~~~tll~mT-~~f~~i~E~~L~~d~~~~sk~v~VGwGrke-Tq-frgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsW 203 (1265)
T KOG1920|consen 128 TGRQTLLFMT-KDFEPIAEKPLDADDERKSKFVNVGWGRKE-TQ-FRGS-EGRQAARQKIEKEKALEQIEQDDHKTSISW 203 (1265)
T ss_pred eCCcEEEEEe-ccccchhccccccccccccccceecccccc-ee-eecc-hhhhcccccccccccccchhhccCCceEEE
Confidence 8777776644 22222211111 11222234443322 11 1111 121111111111111111123344567999
Q ss_pred CCCCCcEEEEE-----eCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEe---CCCcEEEE
Q 013827 295 DPHAEHSFVVS-----LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS---TDKMVKLW 366 (436)
Q Consensus 295 ~~~~~~~~~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~d~~i~iw 366 (436)
--+|. ++++. .....|++||-. +. .-..-....+.-.+++|-|.| .++++-. .|+.|.+|
T Consensus 204 RgDg~-~fAVs~~~~~~~~RkirV~drE-g~---------Lns~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~Ivff 271 (1265)
T KOG1920|consen 204 RGDGE-YFAVSFVESETGTRKIRVYDRE-GA---------LNSTSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFF 271 (1265)
T ss_pred ccCCc-EEEEEEEeccCCceeEEEeccc-ch---------hhcccCcccccccceeecCCC-CeEeeeeecCCCCcEEEE
Confidence 98884 66663 233789999987 31 111111223334689999988 7877754 36679999
Q ss_pred ECCCCCc-eeEEeeCCCCCcEEEEEEcCCCCcEEEE---EeCCCcEEEEeCCCCc
Q 013827 367 DLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAI---GGSKGKLEIWDTLSDA 417 (436)
Q Consensus 367 d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s---~~~dg~i~iwd~~~~~ 417 (436)
..+.-+. ......+.....+..++|+.++. +||. ......|++|-+.+..
T Consensus 272 ErNGL~hg~f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 272 ERNGLRHGEFVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ecCCccccccccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCeE
Confidence 8765321 12333344444599999999998 6776 4445559999987754
No 325
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.41 E-value=4.8e-05 Score=70.25 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=86.1
Q ss_pred eCCeeEEEeCCCCCcEEEEE----eCCCc----EEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEE
Q 013827 286 AADVESLAWDPHAEHSFVVS----LEDGT----IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG 357 (436)
Q Consensus 286 ~~~i~~~~~~~~~~~~~~~~----~~dg~----i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 357 (436)
.....++.|+-..++.+.+. +.+|. -.+|++...+. .....+.-.....+.+.+++|+. ..|+.|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl------qrvsvtsipL~s~v~~ca~sp~E-~kLvlG 277 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL------QRVSVTSIPLPSQVICCARSPSE-DKLVLG 277 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce------eEEEEEEEecCCcceEEecCccc-ceEEEE
Confidence 44456666666444555443 22332 34566654321 01112223467789999999998 899999
Q ss_pred eCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccCC
Q 013827 358 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 426 (436)
Q Consensus 358 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (436)
+.||.|.+||...+.. ... ...-..+.++|+|+|. ++++|+..|.+.+||+.-...-...+.+.
T Consensus 278 C~DgSiiLyD~~~~~t--~~~--ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~qLlsEd 341 (545)
T PF11768_consen 278 CEDGSIILYDTTRGVT--LLA--KAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQLLSED 341 (545)
T ss_pred ecCCeEEEEEcCCCee--eee--eecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCccceeecccc
Confidence 9999999999987642 211 2233578899999999 68889999999999997665555555443
No 326
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.36 E-value=8.6e-05 Score=68.87 Aligned_cols=201 Identities=14% Similarity=0.100 Sum_probs=118.7
Q ss_pred cccceeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcE--EEEec
Q 013827 199 HTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV--VMKDA 273 (436)
Q Consensus 199 h~~~v~~~~~~~~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i--~~wd~ 273 (436)
-...+..-+|+|++..+....-.. ..+.++++.+++....+. ..+.-..-+|+|+|..++++...||.. .+.|+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 345677788999976543333222 359999999887655554 233344568999997777788888864 55566
Q ss_pred CCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCE
Q 013827 274 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL 353 (436)
Q Consensus 274 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 353 (436)
....... +....+.-..-.|+|+|..++++.+..|.-.||-..... .....+......-....|+|+| .+
T Consensus 270 ~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g--------~~~~riT~~~~~~~~p~~SpdG-~~ 339 (425)
T COG0823 270 DGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG--------SQVTRLTFSGGGNSNPVWSPDG-DK 339 (425)
T ss_pred CCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC--------CceeEeeccCCCCcCccCCCCC-CE
Confidence 6655333 233333344678999999888888888876666544331 1123333333333378899999 56
Q ss_pred EEEEeC-CCc--EEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 013827 354 LATGST-DKM--VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 354 l~~~~~-d~~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 413 (436)
|+..+. +|. |.+.|+.++....... .......-.|.++++.++.+++.-+.=.++.+
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt---~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~ 399 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGGKIRILT---STYLNESPSWAPNGRMIMFSSGQGGGSVLSLV 399 (425)
T ss_pred EEEEeccCCceeeEEeccCCCCcEEEcc---ccccCCCCCcCCCCceEEEeccCCCCceEEEe
Confidence 555443 444 6666776655212222 22223345677888765544444333334433
No 327
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.35 E-value=1.7e-07 Score=86.20 Aligned_cols=202 Identities=20% Similarity=0.238 Sum_probs=135.2
Q ss_pred ccceeEEEecCCC-CcEEEEEeCCCcEEEEeCCCCeE--EEEEcccCCCeEEEEEcCCCCCEEEEEE----CCCcEEEEe
Q 013827 200 TDSVLGLAWNKEF-RNILASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGS----FDRSVVMKD 272 (436)
Q Consensus 200 ~~~v~~~~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~----~d~~i~~wd 272 (436)
...+.|+++.-+. +.+++.|..+|.|-+-.+..... .....++..+.++++|++-..+.||+|- .|..+.+||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3456777765543 35899999999999988765432 2344678889999999997646676663 356799999
Q ss_pred cCCCCC--c--cceE-eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEec
Q 013827 273 ARISTH--S--GFKW-AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN 347 (436)
Q Consensus 273 ~~~~~~--~--~~~~-~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 347 (436)
+.+.-. . ..+. .......+++|..+ ..++.+|.....++++|+|... .....-.+..+..+...
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~----------~~~~svnTk~vqG~tVd 204 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSL----------DSVSSVNTKYVQGITVD 204 (783)
T ss_pred cccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhh----------hhhhhhhhhhcccceec
Confidence 986521 1 1111 23445668889864 4789999999999999999531 11222234456677788
Q ss_pred CCCCCEEEEEeCCCcEEEEEC-CCCCceeEEeeCC----CCCcEEEEEEcCCCCcEEEEEeCC-CcEEEEeCC
Q 013827 348 PLVPNLLATGSTDKMVKLWDL-SNNQPSCIASRNP----KAGAVFSVAFSEDSPFVLAIGGSK-GKLEIWDTL 414 (436)
Q Consensus 348 p~~~~~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~ 414 (436)
|-.++++++-. ||.|.+||. +.-+. .+..... ....+..++|.|....++++...| ++|+++|+.
T Consensus 205 p~~~nY~cs~~-dg~iAiwD~~rnien-pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 205 PFSPNYFCSNS-DGDIAIWDTYRNIEN-PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCCCCceeccc-cCceeeccchhhhcc-HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 85557887766 999999993 33221 1111111 122488999999776667766654 789999985
No 328
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.34 E-value=0.00097 Score=62.31 Aligned_cols=229 Identities=9% Similarity=0.048 Sum_probs=131.2
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeE-EEecCCCCcEEEEEe
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASAS 220 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~ 220 (436)
++..++.++.+|.+.-+|.++++..-.... ...+.+ .... + ..++.+.
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~----------------------------~~~~~ssP~v~-~--~~v~v~~ 167 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKV----------------------------AGEALSRPVVS-D--GLVLVHT 167 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccC----------------------------CCceecCCEEE-C--CEEEEEC
Confidence 355677788899999999988776543211 011111 1111 2 2566778
Q ss_pred CCCcEEEEeCCCCeEEEEEcccCCCeEE-EEEcC--CCCCEEEEEECCCcEEEEecCCCCCccceEe-eeC------Cee
Q 013827 221 ADKQVKIWDVAAGKCNLTLEHHTDKVQA-VAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFKWA-VAA------DVE 290 (436)
Q Consensus 221 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~-~~~~~--~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~------~i~ 290 (436)
.++.+.-+|.++|+.+..+......+.. ..-+| .+ ..++.++.++.+..+|..+++..-.... ... ...
T Consensus 168 ~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~ 246 (394)
T PRK11138 168 SNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLV 246 (394)
T ss_pred CCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC-CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhccc
Confidence 8899999999999988776532111000 00011 12 3466778889999888887765432110 000 001
Q ss_pred EEEeCC--CCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 013827 291 SLAWDP--HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 368 (436)
Q Consensus 291 ~~~~~~--~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~ 368 (436)
.+..+| .+ ..+++++.+|.+..+|..+++ .+..... .....+.. .+ ..++.++.++.+..+|.
T Consensus 247 ~~~~sP~v~~-~~vy~~~~~g~l~ald~~tG~---------~~W~~~~--~~~~~~~~--~~-~~vy~~~~~g~l~ald~ 311 (394)
T PRK11138 247 DVDTTPVVVG-GVVYALAYNGNLVALDLRSGQ---------IVWKREY--GSVNDFAV--DG-GRIYLVDQNDRVYALDT 311 (394)
T ss_pred ccCCCcEEEC-CEEEEEEcCCeEEEEECCCCC---------EEEeecC--CCccCcEE--EC-CEEEEEcCCCeEEEEEC
Confidence 111122 12 356677788999999998873 2222211 11112222 23 57778888999999999
Q ss_pred CCCCceeEEeeCCCC-CcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 369 SNNQPSCIASRNPKA-GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 369 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
.+++. +....... ....+.... ++ .++.++.+|.|...|..+++.+.+.
T Consensus 312 ~tG~~--~W~~~~~~~~~~~sp~v~-~g--~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 312 RGGVE--LWSQSDLLHRLLTAPVLY-NG--YLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred CCCcE--EEcccccCCCcccCCEEE-CC--EEEEEeCCCEEEEEECCCCCEEEEE
Confidence 98873 33222111 111222222 34 3666899999999999999877554
No 329
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.33 E-value=0.00086 Score=62.64 Aligned_cols=223 Identities=8% Similarity=0.039 Sum_probs=122.7
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCC
Q 013827 143 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 222 (436)
Q Consensus 143 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 222 (436)
+..++.+..+|.|.-+|..+++.+-..... .......+...++. . + ..++.++.+
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~------------------~~~~~~~~~~sP~v----~-~--~~v~~~~~~ 214 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLD------------------VPSLTLRGESAPAT----A-F--GGAIVGGDN 214 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCC------------------CCcccccCCCCCEE----E-C--CEEEEEcCC
Confidence 445667778899999999887765332100 00000011112221 1 2 246667788
Q ss_pred CcEEEEeCCCCeEEEEEcccCC-------CeEEEEEcC--CCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEE
Q 013827 223 KQVKIWDVAAGKCNLTLEHHTD-------KVQAVAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA 293 (436)
Q Consensus 223 g~v~vwd~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~ 293 (436)
|.+..+|.++++.+........ ....+.-+| .+ ..++.++.+|.+..+|..+++..-.. ... ....+.
T Consensus 215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ald~~tG~~~W~~-~~~-~~~~~~ 291 (394)
T PRK11138 215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG-GVVYALAYNGNLVALDLRSGQIVWKR-EYG-SVNDFA 291 (394)
T ss_pred CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC-CEEEEEEcCCeEEEEECCCCCEEEee-cCC-CccCcE
Confidence 9999999998876554421100 000111122 23 45667778999999999887654211 111 111122
Q ss_pred eCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEecc-CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 013827 294 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 294 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
.. + ..+++++.+|.+..+|..+++. +.....- .....+.... + ..|+.++.+|.+.+.|..+++
T Consensus 292 ~~--~-~~vy~~~~~g~l~ald~~tG~~---------~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 292 VD--G-GRIYLVDQNDRVYALDTRGGVE---------LWSQSDLLHRLLTAPVLY--N-GYLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred EE--C-CEEEEEcCCCeEEEEECCCCcE---------EEcccccCCCcccCCEEE--C-CEEEEEeCCCEEEEEECCCCC
Confidence 22 3 4677788899999999988732 2211110 1111222222 3 678889999999999999988
Q ss_pred ceeEEeeCCCCCcEE-EEEEcCCCCcEEEEEeCCCcEEEEeC
Q 013827 373 PSCIASRNPKAGAVF-SVAFSEDSPFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 373 ~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~dg~i~iwd~ 413 (436)
....... ....+. ...+ .++. |+.++.||.|+.++.
T Consensus 357 ~~~~~~~--~~~~~~s~P~~-~~~~--l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 357 FVAQQKV--DSSGFLSEPVV-ADDK--LLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEEc--CCCcceeCCEE-ECCE--EEEEeCCceEEEEeC
Confidence 4333222 222222 2222 2443 666899999988764
No 330
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.33 E-value=0.0001 Score=68.11 Aligned_cols=113 Identities=19% Similarity=0.260 Sum_probs=83.0
Q ss_pred ceeEEEecCCCCcEEEEE----eCCCc----EEEEeCCCCeE----EEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 013827 202 SVLGLAWNKEFRNILASA----SADKQ----VKIWDVAAGKC----NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVV 269 (436)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~----~~dg~----v~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 269 (436)
...++.|+-..++.+.+. +.+|. -.+|++..++. +..+ .....|.+++++|+. ..++.|+.||.|.
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E-~kLvlGC~DgSii 284 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSE-DKLVLGCEDGSII 284 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCccc-ceEEEEecCCeEE
Confidence 346777876545555553 33443 35677665432 1222 367899999999999 8999999999999
Q ss_pred EEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 270 MKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 319 (436)
Q Consensus 270 ~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 319 (436)
+||...+... .....-.++.++|+|+| .++++|+..|.+.+||+.-.
T Consensus 285 LyD~~~~~t~--~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRGVTL--LAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCeee--eeeecccceEEEEcCCC-cEEEEEcCCceEEEEEeecC
Confidence 9998765333 33455668999999988 58999999999999998765
No 331
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.27 E-value=0.0025 Score=56.12 Aligned_cols=247 Identities=15% Similarity=0.123 Sum_probs=138.9
Q ss_pred CCCCcEEEEee----------CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEec
Q 013827 140 REKGNFMAVGS----------MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN 209 (436)
Q Consensus 140 s~~~~~l~~g~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 209 (436)
+|+++.+.+++ ..-.|.+||..+......+.+... .+. + .......++++
T Consensus 44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k-----------------~R~-~--~~~~~~~~~ls 103 (342)
T PF06433_consen 44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK-----------------PRA-Q--VVPYKNMFALS 103 (342)
T ss_dssp -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS------------------B-----BS--GGGEEE-
T ss_pred CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc-----------------chh-e--ecccccceEEc
Confidence 89999998754 234699999988765554433211 000 0 01123445788
Q ss_pred CCCCcEEEEE--eCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEe-e-
Q 013827 210 KEFRNILASA--SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-V- 285 (436)
Q Consensus 210 ~~~~~~l~s~--~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~- 285 (436)
.+|+ +++.. +--.+|.|.|+..++.+.++.- .+ |...-|.++.-|.+-+.||.+....+........... .
T Consensus 104 ~dgk-~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F 178 (342)
T PF06433_consen 104 ADGK-FLYVQNFTPATSVTVVDLAAKKVVGEIDT-PG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVF 178 (342)
T ss_dssp TTSS-EEEEEEESSSEEEEEEETTTTEEEEEEEG-TS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEES
T ss_pred cCCc-EEEEEccCCCCeEEEEECCCCceeeeecC-CC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecccc
Confidence 8875 55544 3345799999999998888763 22 2223344445688999999999998885544431111 0
Q ss_pred ---eCC-eeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec----------cCCCeEEEEecCCCC
Q 013827 286 ---AAD-VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA----------HDKAVCTISYNPLVP 351 (436)
Q Consensus 286 ---~~~-i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~p~~~ 351 (436)
..+ +..-++...+ ..++--+.+|.|+-.|+..... ........ ..+.-.-+++++..+
T Consensus 179 ~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~-------~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~ 250 (342)
T PF06433_consen 179 DPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSA-------KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG 250 (342)
T ss_dssp STTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSE-------EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred CCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcc-------cccCcccccCccccccCcCCcceeeeeeccccC
Confidence 111 1122222223 2344467788888888876621 11112211 113345577877552
Q ss_pred CEEEEE--eCCC-------cEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEE-EeCCCcEEEEeCCCCccccc
Q 013827 352 NLLATG--STDK-------MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAI-GGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 352 ~~l~~~--~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~ 421 (436)
++.+.- +.++ .|.++|+.+++......+. .++.+|+.+.+..-+|.+ ...++.|.+||..+++.+++
T Consensus 251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 333221 1122 3788899888754443333 257799999887655654 45679999999999998876
Q ss_pred c
Q 013827 422 R 422 (436)
Q Consensus 422 ~ 422 (436)
.
T Consensus 328 ~ 328 (342)
T PF06433_consen 328 I 328 (342)
T ss_dssp E
T ss_pred h
Confidence 4
No 332
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.27 E-value=0.0029 Score=56.80 Aligned_cols=285 Identities=15% Similarity=0.140 Sum_probs=134.2
Q ss_pred cccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcE
Q 013827 76 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI 155 (436)
Q Consensus 76 v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 155 (436)
-+.=+|.+||+.|+.++..+ +..+++..+..+.+...|.-... -..+..++ +|+.+.++-......|
T Consensus 38 F~~~~ft~dG~kllF~s~~d--g~~nly~lDL~t~~i~QLTdg~g--~~~~g~~~---------s~~~~~~~Yv~~~~~l 104 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDFD--GNRNLYLLDLATGEITQLTDGPG--DNTFGGFL---------SPDDRALYYVKNGRSL 104 (386)
T ss_dssp TTS--B-TTS-EEEEEE-TT--SS-EEEEEETTT-EEEE---SS---B-TTT-EE----------TTSSEEEEEETTTEE
T ss_pred ecCCCcCCCCCEEEEEeccC--CCcceEEEEcccCEEEECccCCC--CCccceEE---------ecCCCeEEEEECCCeE
Confidence 34457899998777766533 33588888888873333332211 11111222 6777777665555678
Q ss_pred EEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEec--CCCCcEEEEE--------------
Q 013827 156 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN--KEFRNILASA-------------- 219 (436)
Q Consensus 156 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~l~s~-------------- 219 (436)
+-.|+++.+.... +.-....+-...|. .++ ..++-.
T Consensus 105 ~~vdL~T~e~~~v---------------------------y~~p~~~~g~gt~v~n~d~-t~~~g~e~~~~d~~~l~~~~ 156 (386)
T PF14583_consen 105 RRVDLDTLEERVV---------------------------YEVPDDWKGYGTWVANSDC-TKLVGIEISREDWKPLTKWK 156 (386)
T ss_dssp EEEETTT--EEEE---------------------------EE--TTEEEEEEEEE-TTS-SEEEEEEEEGGG-----SHH
T ss_pred EEEECCcCcEEEE---------------------------EECCcccccccceeeCCCc-cEEEEEEEeehhccCccccH
Confidence 8888877543211 11122333233442 232 233221
Q ss_pred --------eCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECC---C-cEEEEecCCCCCccce-Ee--
Q 013827 220 --------SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD---R-SVVMKDARISTHSGFK-WA-- 284 (436)
Q Consensus 220 --------~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~-~i~~wd~~~~~~~~~~-~~-- 284 (436)
--...|.-.|+.+|+....+. ...-+.-+.|+|..+.+|+-|-+. . .-+||-+++....... ..
T Consensus 157 ~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~ 235 (386)
T PF14583_consen 157 GFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM 235 (386)
T ss_dssp HHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---
T ss_pred HHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC
Confidence 112345566777777554444 456778899999886777776542 2 2366766543322111 11
Q ss_pred eeCCeeEEEeCCCCCcEEEEEe----CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCC
Q 013827 285 VAADVESLAWDPHAEHSFVVSL----EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD 360 (436)
Q Consensus 285 ~~~~i~~~~~~~~~~~~~~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 360 (436)
....+..=-|.|+|..+...+. .+..|.-+|+.+.. ... +. .......+-.++++ .+++-=+.|
T Consensus 236 ~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~---------~~~-~~-~~p~~~H~~ss~Dg-~L~vGDG~d 303 (386)
T PF14583_consen 236 EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE---------RRR-LM-EMPWCSHFMSSPDG-KLFVGDGGD 303 (386)
T ss_dssp TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT-----------EEE-EE-EE-SEEEEEE-TTS-SEEEEEE--
T ss_pred CCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC---------ceE-EE-eCCceeeeEEcCCC-CEEEecCCC
Confidence 1223444568999877666554 23356777777662 111 11 11234456667777 666543333
Q ss_pred C----------------cEEEEECCCCCceeEEee-------CCCCC-cEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 361 K----------------MVKLWDLSNNQPSCIASR-------NPKAG-AVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 361 ~----------------~i~iwd~~~~~~~~~~~~-------~~~~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
. -|+++++..+....+... .++.. .=....|+|||+++|.++...|...||-+.
T Consensus 304 ~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 304 APVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp -----------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred CCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 1 466778876653322222 11111 124678999999999999999998888654
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.26 E-value=0.00025 Score=67.29 Aligned_cols=259 Identities=12% Similarity=0.104 Sum_probs=137.1
Q ss_pred EEEeeCCCcEEEEeCCCCCCCcceeeecccchh--------hhhhcccCCCcccccccccCcccceeEEEecCCCCcEEE
Q 013827 146 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE--------KKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 217 (436)
Q Consensus 146 l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 217 (436)
|.+|+..|.|+|+-+.+++.+..+.++...+.. ++.... ... ......=..|.-.+.--.=..||+ +|+
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~-~~~-~~~~~~gD~HHp~~s~t~g~ydGr-~~f 145 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGE-GAR-GGKYLNGDTHHPHMSFTDGTYDGR-YLF 145 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhc-ccc-CCcccCCCcCCCcccccCCcccee-EEE
Confidence 678999999999999999988877666543321 111100 000 000000011211111111122443 555
Q ss_pred EEe-CCCcEEEEeCCCCeEEEEEcc-cCCCeEEEE-------------------EcCCCCCEEEEEECCCcEEEEecCCC
Q 013827 218 SAS-ADKQVKIWDVAAGKCNLTLEH-HTDKVQAVA-------------------WNHHSPQILLSGSFDRSVVMKDARIS 276 (436)
Q Consensus 218 s~~-~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~-------------------~~~~~~~~l~s~~~d~~i~~wd~~~~ 276 (436)
.-. .+..|-..++...++.+.+.- ....+..+. +.|+|..+..+.-..+.+.+.|..+.
T Consensus 146 indk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etm 225 (635)
T PRK02888 146 INDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETM 225 (635)
T ss_pred EecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccc
Confidence 444 345566666665554433321 111222222 23444222223334456677777654
Q ss_pred CCccceEeeeCCeeEEEeCCCCCcEEEEEe---------------------------------------CCCcEEEEeCC
Q 013827 277 THSGFKWAVAADVESLAWDPHAEHSFVVSL---------------------------------------EDGTIKGFDIR 317 (436)
Q Consensus 277 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------------------------------------~dg~i~i~d~~ 317 (436)
+... .....+....++++|++...++++. .++.|.+.|.+
T Consensus 226 eV~~-qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~ 304 (635)
T PRK02888 226 EVAW-QVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGR 304 (635)
T ss_pred eEEE-EEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECC
Confidence 4332 2334455667788887754444431 11335555555
Q ss_pred CCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc----------eeEEeeCCCCCcEE
Q 013827 318 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----------SCIASRNPKAGAVF 387 (436)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~----------~~~~~~~~~~~~v~ 387 (436)
+... ....+...-.-......+.++|||..+++++..+.+|.|+|+...+. .......-.. ...
T Consensus 305 t~~~-----~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl-GPL 378 (635)
T PRK02888 305 KAAN-----AGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL-GPL 378 (635)
T ss_pred cccc-----CCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC-Ccc
Confidence 4100 00112222223455688999999955555666699999999987542 1122222222 334
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 388 SVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 388 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
..+|.++|. .+.|-.-|..|..||+..
T Consensus 379 HTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 379 HTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eEEECCCCC-EEEeEeecceeEEEehHH
Confidence 678999997 688889999999999876
No 334
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.23 E-value=0.00031 Score=66.18 Aligned_cols=143 Identities=12% Similarity=0.163 Sum_probs=93.7
Q ss_pred cccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCC
Q 013827 74 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP 153 (436)
Q Consensus 74 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 153 (436)
..|.--+++..+.+++.|...+ .+++|+...+....+...- ....+|..-+ |++..++|+|+..|
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G-----~lyl~~R~~~~~~~~~~~~----~~~~~~~~~v------s~~e~lvAagt~~g 98 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAG-----SVYLYNRHTGEMRKLKNEG----ATGITCVRSV------SSVEYLVAAGTASG 98 (726)
T ss_pred ceEEEEEeecCCceEEEecccc-----eEEEEecCchhhhcccccC----ccceEEEEEe------cchhHhhhhhcCCc
Confidence 3455567788899999998876 8999987765322222111 1122232222 78899999999999
Q ss_pred cEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 154 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG 233 (436)
Q Consensus 154 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~ 233 (436)
.|.|+-++...... ..... ..-..|...|++++|++++ ..+++|...|.|..-.+...
T Consensus 99 ~V~v~ql~~~~p~~-~~~~t--------------------~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~ 156 (726)
T KOG3621|consen 99 RVSVFQLNKELPRD-LDYVT--------------------PCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSR 156 (726)
T ss_pred eEEeehhhccCCCc-ceeec--------------------cccccCCceEEEEEecccc-cEEeecCCCceEEEEEechh
Confidence 99999887632222 11111 1112388999999999997 69999999999999888762
Q ss_pred ----eEEEEEcccCCCeEEEEEcC
Q 013827 234 ----KCNLTLEHHTDKVQAVAWNH 253 (436)
Q Consensus 234 ----~~~~~~~~~~~~v~~~~~~~ 253 (436)
-..+.+-...+.|..+.+..
T Consensus 157 ~~~~~~~q~il~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 157 QAFLSKSQEILSEDSEIVQLDYLQ 180 (726)
T ss_pred hhhccccceeeccCcceEEeeccc
Confidence 11223333456777777653
No 335
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.21 E-value=0.00013 Score=67.59 Aligned_cols=180 Identities=14% Similarity=0.122 Sum_probs=112.2
Q ss_pred cEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECC---CcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCc
Q 013827 224 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD---RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 300 (436)
Q Consensus 224 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 300 (436)
.+.+-|.+ +.....+......+..-+|+|++..+....-.. ..+.++|+.++.... .....+.-..-+|+|+|.+
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~-i~~~~g~~~~P~fspDG~~ 251 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV-ILNFNGNNGAPAFSPDGSK 251 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce-eeccCCccCCccCCCCCCE
Confidence 44444543 455555555566777889999994433332222 358899998877665 3345566677789999988
Q ss_pred EEEEEeCCCcEE--EEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCc--EEEEECCCCCceeE
Q 013827 301 SFVVSLEDGTIK--GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM--VKLWDLSNNQPSCI 376 (436)
Q Consensus 301 ~~~~~~~dg~i~--i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--i~iwd~~~~~~~~~ 376 (436)
++++...||... ++|+.... ...+....+.-+.-.|+|+|..++++.+..|. |.+++....+...
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~----------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r- 320 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKN----------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR- 320 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCc----------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-
Confidence 888888888755 45666552 22233333444477899999555566666665 5566666665322
Q ss_pred EeeCCCCCcEEEEEEcCCCCcEEEEEeCCCc--EEEEeCCCCcc
Q 013827 377 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDTLSDAG 418 (436)
Q Consensus 377 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~ 418 (436)
.+..... -..-.|+|||++++.....+|. |.+.|+.++..
T Consensus 321 iT~~~~~--~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 321 LTFSGGG--NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred eeccCCC--CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 2222222 2267899999975555533455 67777766653
No 336
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.0015 Score=60.52 Aligned_cols=212 Identities=13% Similarity=0.117 Sum_probs=141.6
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEE--CCCcEEEEecCCCCCc
Q 013827 202 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHS 279 (436)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~ 279 (436)
.-..++.++.+....+....++.|.+.|..+.+.......-. ....+++++++....++-. .++++.+.|..+.+..
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 345778888876677777777999999988877766664322 6678999999955445444 3788999998888777
Q ss_pred cceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeC
Q 013827 280 GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 359 (436)
Q Consensus 280 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 359 (436)
.. .........++++|++...+++-..++.|.+.|........ . ...... .-......+.++|++....++...
T Consensus 154 ~~-~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~---~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 154 AT-IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G---SVGSLV-GVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred EE-EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c---cccccc-ccCCCCceEEECCCCCEEEEEecc
Confidence 65 33333348999999997677777789999999976552110 0 000011 122334678999999434444443
Q ss_pred C--CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 360 D--KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 360 d--~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
+ +.+...|..++.........+.. ....+..+|+|.++.+.-...+.+.+-|..+......
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 3 68999998887632221111222 4567899999997555545568899999888766554
No 337
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.08 E-value=0.0019 Score=53.73 Aligned_cols=149 Identities=10% Similarity=0.009 Sum_probs=97.7
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeC
Q 013827 208 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA 287 (436)
Q Consensus 208 ~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 287 (436)
..++...+++.|+..+.+.-.|..+|+...+-. ....+.+-+.- -| ++++.|...|.+++.+.+++...........
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vg-dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VG-DFVVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-EC-CEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence 345556789999999999999999998765432 22233332222 24 6799999999999999999877654444333
Q ss_pred CeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 013827 288 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 367 (436)
Q Consensus 288 ~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd 367 (436)
--.....++++ .++..|+.|+..+..|.++. ..+...+...+...+-+..|-. ..|..+...|.+.--.
T Consensus 95 vk~~a~~d~~~-glIycgshd~~~yalD~~~~---------~cVykskcgG~~f~sP~i~~g~-~sly~a~t~G~vlavt 163 (354)
T KOG4649|consen 95 VKVRAQCDFDG-GLIYCGSHDGNFYALDPKTY---------GCVYKSKCGGGTFVSPVIAPGD-GSLYAAITAGAVLAVT 163 (354)
T ss_pred hccceEEcCCC-ceEEEecCCCcEEEeccccc---------ceEEecccCCceeccceecCCC-ceEEEEeccceEEEEc
Confidence 33344456655 69999999999999999987 5566655444444455566622 3444444555544444
Q ss_pred CCC
Q 013827 368 LSN 370 (436)
Q Consensus 368 ~~~ 370 (436)
.+.
T Consensus 164 ~~~ 166 (354)
T KOG4649|consen 164 KNP 166 (354)
T ss_pred cCC
Confidence 433
No 338
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.08 E-value=0.0012 Score=62.83 Aligned_cols=215 Identities=11% Similarity=0.042 Sum_probs=126.7
Q ss_pred CCCCcEEEEeeC-CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeE-----EEecCCCC
Q 013827 140 REKGNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG-----LAWNKEFR 213 (436)
Q Consensus 140 s~~~~~l~~g~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-----~~~~~~~~ 213 (436)
..||++|..-.. +..|...+++..++..-..+.... ......+. ...++..|.+ +=+.|+|.
T Consensus 138 ~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~----------~~Hg~~~~--~~p~t~yv~~~~e~~~PlpnDGk 205 (635)
T PRK02888 138 TYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQ----------GIHGLRPQ--KIPRTGYVFCNGEFRIPLPNDGK 205 (635)
T ss_pred ccceeEEEEecCCCcceEEEECccEeeceeEeCCCcc----------CccccCcc--ccCCccEEEeCcccccccCCCCC
Confidence 357888888764 567777777766654322211100 00000000 0112222222 33456664
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEE------------------------------
Q 013827 214 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS------------------------------ 263 (436)
Q Consensus 214 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------------------------------ 263 (436)
.+..+.-..+.+.+.|.++.+...++... .....+.++++| .++++.+
T Consensus 206 ~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdG-k~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea 283 (635)
T PRK02888 206 DLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDG-KYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEE 283 (635)
T ss_pred EeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCC-CEEEEeccCcccCcceeeeccccCceEEEEchHHHHH
Confidence 33333444567788888877776665432 234566777777 4444443
Q ss_pred ----------CCCcEEEEecCC----CCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCC---C
Q 013827 264 ----------FDRSVVMKDARI----STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS---T 326 (436)
Q Consensus 264 ----------~d~~i~~wd~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~---~ 326 (436)
.++.|.+.|.++ ................+.++|+|..+++++..+.++.++|+.+.+..... .
T Consensus 284 ~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~ 363 (635)
T PRK02888 284 AVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP 363 (635)
T ss_pred hhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence 124577788776 33344455677888999999999888888888999999999886421100 0
Q ss_pred CCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 013827 327 SQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 327 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~ 370 (436)
......+..-- ......+|.++| +...+-.-|..|..|++..
T Consensus 364 ~~~vvaevevG-lGPLHTaFDg~G-~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 364 RDAVVAEPELG-LGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cceEEEeeccC-CCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence 00112222222 233567899988 7888888899999999875
No 339
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.07 E-value=0.00074 Score=58.20 Aligned_cols=184 Identities=13% Similarity=0.053 Sum_probs=109.9
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 221 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 221 (436)
++..+++++.++.|..||..+++.+-..... +..... . ...+ ..++.++.
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-------------------------~~~~~~--~-~~~~--~~v~v~~~ 84 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLP-------------------------GPISGA--P-VVDG--GRVYVGTS 84 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECS-------------------------SCGGSG--E-EEET--TEEEEEET
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecc-------------------------ccccce--e-eecc--cccccccc
Confidence 5677777889999999999887654332110 000001 1 2222 35677778
Q ss_pred CCcEEEEeCCCCeEEEEE-cccC---CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCC---------
Q 013827 222 DKQVKIWDVAAGKCNLTL-EHHT---DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD--------- 288 (436)
Q Consensus 222 dg~v~vwd~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~--------- 288 (436)
++.+..+|..+|+.+... .... ...........+ ..++.+..++.|..+|+++++..-........
T Consensus 85 ~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 163 (238)
T PF13360_consen 85 DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFS 163 (238)
T ss_dssp TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEET
T ss_pred eeeeEecccCCcceeeeeccccccccccccccCceEec-CEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeec
Confidence 889999999999988774 3221 111222222235 67888888999999999988765433221111
Q ss_pred -e-eEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEE
Q 013827 289 -V-ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 366 (436)
Q Consensus 289 -i-~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iw 366 (436)
+ ..+.+. ++ .++.+..++.+..+|+.++ ..+.... ...+..+ ..+.+ ..|+.++.++.|..|
T Consensus 164 ~~~~~~~~~-~~--~v~~~~~~g~~~~~d~~tg---------~~~w~~~--~~~~~~~-~~~~~-~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 164 DINGSPVIS-DG--RVYVSSGDGRVVAVDLATG---------EKLWSKP--ISGIYSL-PSVDG-GTLYVTSSDGRLYAL 227 (238)
T ss_dssp TEEEEEECC-TT--EEEEECCTSSEEEEETTTT---------EEEEEEC--SS-ECEC-EECCC-TEEEEEETTTEEEEE
T ss_pred ccccceEEE-CC--EEEEEcCCCeEEEEECCCC---------CEEEEec--CCCccCC-ceeeC-CEEEEEeCCCEEEEE
Confidence 1 222333 23 6677777775333499987 3232222 2223331 33455 677777799999999
Q ss_pred ECCCCC
Q 013827 367 DLSNNQ 372 (436)
Q Consensus 367 d~~~~~ 372 (436)
|+++++
T Consensus 228 d~~tG~ 233 (238)
T PF13360_consen 228 DLKTGK 233 (238)
T ss_dssp ETTTTE
T ss_pred ECCCCC
Confidence 999987
No 340
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.00 E-value=0.0008 Score=61.90 Aligned_cols=260 Identities=11% Similarity=0.070 Sum_probs=129.4
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccc-----------hhh--hhhc--ccC-CCcccccccccCcccce
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGID-----------EEK--KKKK--SKK-GKKSSIKYKKGSHTDSV 203 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~-----------~~~--~~~~--~~~-~~~~~~~~~~~~h~~~v 203 (436)
+++..-||+|...|.|.||.+...+...........+ ... ++.. ... .+...+...+....++|
T Consensus 10 a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~v 89 (395)
T PF08596_consen 10 APETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPV 89 (395)
T ss_dssp ETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SE
T ss_pred cCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheeccCCcE
Confidence 5677789999999999999876543322000000000 000 0000 000 12234445555668999
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEE--cc------cCCCeEEEEEcC-----CC--CCEEEEEECCCcE
Q 013827 204 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL--EH------HTDKVQAVAWNH-----HS--PQILLSGSFDRSV 268 (436)
Q Consensus 204 ~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~--~~------~~~~v~~~~~~~-----~~--~~~l~s~~~d~~i 268 (436)
++++.+.-| ++|.|..+|.+.|.|++....+..- .. ....|+++.|.- |+ .-.+++|...|.+
T Consensus 90 tal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v 167 (395)
T PF08596_consen 90 TALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNV 167 (395)
T ss_dssp EEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEE
T ss_pred eEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCE
Confidence 999999775 9999999999999999887766542 22 345688888851 11 1368889999999
Q ss_pred EEEecCCC--CCc-cceE----eeeCCeeEEE-eCCCC-------------------CcEEEEEeCCCcEEEEeCCCCCC
Q 013827 269 VMKDARIS--THS-GFKW----AVAADVESLA-WDPHA-------------------EHSFVVSLEDGTIKGFDIRTAKS 321 (436)
Q Consensus 269 ~~wd~~~~--~~~-~~~~----~~~~~i~~~~-~~~~~-------------------~~~~~~~~~dg~i~i~d~~~~~~ 321 (436)
.+|.+.-. ... .... .+.+++..+. ++.+. ..-+++...+..++++...+.
T Consensus 168 ~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~-- 245 (395)
T PF08596_consen 168 LTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKS-- 245 (395)
T ss_dssp EEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT----
T ss_pred EEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCC--
Confidence 99987521 111 1111 2334444444 32211 012444455778999988876
Q ss_pred CCCCCCCcccEEEeccCCCeEEEEecC----CCCCEEEEEeCCCcEEEEECCCCCceeEEeeCC--CCCcEEEEEEcCCC
Q 013827 322 DPDSTSQQSSFTLHAHDKAVCTISYNP----LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP--KAGAVFSVAFSEDS 395 (436)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~v~~~~~~p----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~ 395 (436)
+..............+.+-+ .+...|++-..+|.|++|.+..-+.+....... +...+....++++|
T Consensus 246 -------k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~G 318 (395)
T PF08596_consen 246 -------KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNG 318 (395)
T ss_dssp --------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS
T ss_pred -------cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCC
Confidence 22222222212223344421 123688888999999999999877544444321 11234456788999
Q ss_pred CcEEEEEeCCCcEEEEe
Q 013827 396 PFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 396 ~~~l~s~~~dg~i~iwd 412 (436)
. +++-.+.. .+.++.
T Consensus 319 d-i~~~~gps-E~~l~s 333 (395)
T PF08596_consen 319 D-IFYWTGPS-EIQLFS 333 (395)
T ss_dssp --EEEE-SSS-EEEEEE
T ss_pred C-EEEEeCcc-cEEEEE
Confidence 8 45544332 344433
No 341
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.99 E-value=0.004 Score=58.17 Aligned_cols=220 Identities=18% Similarity=0.191 Sum_probs=110.6
Q ss_pred cccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCC
Q 013827 74 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP 153 (436)
Q Consensus 74 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 153 (436)
-.+..+.++|+|+.+++.+ ++ ...+|..... .... ........| .++ +.+|+-...+
T Consensus 33 ~~p~~ls~npngr~v~V~g-~g-----eY~iyt~~~~-----r~k~----~G~g~~~vw-------~~~-n~yAv~~~~~ 89 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCG-DG-----EYEIYTALAW-----RNKA----FGSGLSFVW-------SSR-NRYAVLESSS 89 (443)
T ss_dssp S--SEEEE-TTSSEEEEEE-TT-----EEEEEETTTT-----EEEE----EEE-SEEEE--------TS-SEEEEE-TTS
T ss_pred cCCeeEEECCCCCEEEEEc-CC-----EEEEEEccCC-----cccc----cCceeEEEE-------ecC-ccEEEEECCC
Confidence 3578999999999999954 43 5555653221 1111 111234556 454 4477777788
Q ss_pred cEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 154 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG 233 (436)
Q Consensus 154 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~ 233 (436)
+|.|+.--..+....+ .+ ...+..|-. |. +|+..+. +.|.+||++++
T Consensus 90 ~I~I~kn~~~~~~k~i-------------------------~~---~~~~~~If~---G~-LL~~~~~-~~i~~yDw~~~ 136 (443)
T PF04053_consen 90 TIKIYKNFKNEVVKSI-------------------------KL---PFSVEKIFG---GN-LLGVKSS-DFICFYDWETG 136 (443)
T ss_dssp -EEEEETTEE-TT---------------------------------SS-EEEEE----SS-SEEEEET-TEEEEE-TTT-
T ss_pred eEEEEEcCccccceEE-------------------------cC---CcccceEEc---Cc-EEEEECC-CCEEEEEhhHc
Confidence 9999632211111110 01 112333322 53 5655554 48999999999
Q ss_pred eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC--------C---CccceEeeeCCeeEEEeCCCCCcEE
Q 013827 234 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--------T---HSGFKWAVAADVESLAWDPHAEHSF 302 (436)
Q Consensus 234 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--------~---~~~~~~~~~~~i~~~~~~~~~~~~~ 302 (436)
+.++.+... +|..+.|++++ .+++..+.+ .+.+++.... . ...........|.+..|..+ .+
T Consensus 137 ~~i~~i~v~--~vk~V~Ws~~g-~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d---~f 209 (443)
T PF04053_consen 137 KLIRRIDVS--AVKYVIWSDDG-ELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED---CF 209 (443)
T ss_dssp -EEEEESS---E-EEEEE-TTS-SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT---EE
T ss_pred ceeeEEecC--CCcEEEEECCC-CEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC---EE
Confidence 999999743 48999999998 777777644 6667664432 0 12222333678999999864 44
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 013827 303 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 303 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~ 370 (436)
+-.+.. .++. +..+. ...+..-..++.-+.+.|.. +.+.....|+.|..+.+..
T Consensus 210 iYtT~~-~lkY--l~~Ge----------~~~i~~ld~~~yllgy~~~~-~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 210 IYTTSN-HLKY--LVNGE----------TGIIAHLDKPLYLLGYLPKE-NRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEE-TT-EEEE--EETTE----------EEEEEE-SS--EEEEEETTT-TEEEEE-TT--EEEEE--H
T ss_pred EEEcCC-eEEE--EEcCC----------cceEEEcCCceEEEEEEccC-CEEEEEECCCCEEEEEECH
Confidence 444444 6665 33331 23333345566777777765 6777777888888776643
No 342
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.93 E-value=0.019 Score=54.06 Aligned_cols=253 Identities=14% Similarity=0.192 Sum_probs=132.4
Q ss_pred ccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCC-
Q 013827 75 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP- 153 (436)
Q Consensus 75 ~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg- 153 (436)
.+..+.+||||+++|.+-..++.-...+++++...+ ..... ....... ..+.| .++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg---~~l~d-~i~~~~~-~~~~W-------~~d~~~~~y~~~~~~ 192 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG---KFLPD-GIENPKF-SSVSW-------SDDGKGFFYTRFDED 192 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT---EEEEE-EEEEEES-EEEEE-------CTTSSEEEEEECSTT
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC---cCcCC-ccccccc-ceEEE-------eCCCCEEEEEEeCcc
Confidence 444789999999999987766555678888888876 22221 1111111 12667 78877776655333
Q ss_pred ----------cEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCC
Q 013827 154 ----------AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK 223 (436)
Q Consensus 154 ----------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 223 (436)
.|+.|.+.+...... .++ ...........+..+++++.+++......
T Consensus 193 ~~~~~~~~~~~v~~~~~gt~~~~d~-lvf----------------------e~~~~~~~~~~~~~s~d~~~l~i~~~~~~ 249 (414)
T PF02897_consen 193 QRTSDSGYPRQVYRHKLGTPQSEDE-LVF----------------------EEPDEPFWFVSVSRSKDGRYLFISSSSGT 249 (414)
T ss_dssp TSS-CCGCCEEEEEEETTS-GGG-E-EEE----------------------C-TTCTTSEEEEEE-TTSSEEEEEEESSS
T ss_pred cccccCCCCcEEEEEECCCChHhCe-eEE----------------------eecCCCcEEEEEEecCcccEEEEEEEccc
Confidence 267777754332211 111 11111222567888999764454444433
Q ss_pred ---cEEEEeCCCC----eEEEEEcccCCCe-EEEEEcCCCCCEEEEEEC---CCcEEEEecCCCCCc---cceEeeeCC-
Q 013827 224 ---QVKIWDVAAG----KCNLTLEHHTDKV-QAVAWNHHSPQILLSGSF---DRSVVMKDARISTHS---GFKWAVAAD- 288 (436)
Q Consensus 224 ---~v~vwd~~~~----~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~---~~~~~~~~~- 288 (436)
.+.+.++..+ .....+......+ ..+... .+ .+++.... .+.|.-.++...... .....+...
T Consensus 250 ~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~ 327 (414)
T PF02897_consen 250 SESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDV 327 (414)
T ss_dssp SEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSE
T ss_pred cCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCce
Confidence 4788888764 2233333333333 334443 33 44444432 356777777766541 133344443
Q ss_pred -eeEEEeCCCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCcccEEEec-cCCCeEEEEecCCCCCEEEEEeC---CC
Q 013827 289 -VESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGST---DK 361 (436)
Q Consensus 289 -i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~---d~ 361 (436)
+..+... +..+++....++ .|+++++..+ .....+.. -.+.|..+...++++.+.++.+. -+
T Consensus 328 ~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~---------~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~ 396 (414)
T PF02897_consen 328 SLEDVSLF--KDYLVLSYRENGSSRLRVYDLDDG---------KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPP 396 (414)
T ss_dssp EEEEEEEE--TTEEEEEEEETTEEEEEEEETT-T---------EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEE
T ss_pred eEEEEEEE--CCEEEEEEEECCccEEEEEECCCC---------cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCC
Confidence 4444443 445666666655 4788888822 12222222 23445666666666455554443 35
Q ss_pred cEEEEECCCCCcee
Q 013827 362 MVKLWDLSNNQPSC 375 (436)
Q Consensus 362 ~i~iwd~~~~~~~~ 375 (436)
++..||+.+++...
T Consensus 397 ~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 397 TVYRYDLATGELTL 410 (414)
T ss_dssp EEEEEETTTTCEEE
T ss_pred EEEEEECCCCCEEE
Confidence 78888999887533
No 343
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.89 E-value=0.00089 Score=48.37 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=70.4
Q ss_pred eeEEEe---cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc
Q 013827 203 VLGLAW---NKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS 279 (436)
Q Consensus 203 v~~~~~---~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 279 (436)
|+++++ ..+|.+.|+.|+.|..||+|+-+ +.+..+. -.+.|+++.-...+ .|+.+..+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~R--- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGGG--RFAYALANGTVGVYDRSQR--- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCCC--EEEEEecCCEEEEEeCcce---
Confidence 455554 44666899999999999999843 5667776 35678888777654 6899999999999975321
Q ss_pred cceEeeeCCeeEEEe---CCCCCcEEEEEeCCCcEE
Q 013827 280 GFKWAVAADVESLAW---DPHAEHSFVVSLEDGTIK 312 (436)
Q Consensus 280 ~~~~~~~~~i~~~~~---~~~~~~~~~~~~~dg~i~ 312 (436)
......+..++++++ +-+|...+++|-.+|.|-
T Consensus 74 lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 112223344555543 345556799999998774
No 344
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.0082 Score=55.61 Aligned_cols=208 Identities=18% Similarity=0.168 Sum_probs=135.1
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccc
Q 013827 202 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF 281 (436)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 281 (436)
....+...+++.+..++-.....+...+............-......++.++.+.+.++....++.|.+.|..+.+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~- 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG- 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee-
Confidence 4566777888754444444434566655552222222221114456788899885677777778999999976665544
Q ss_pred eEeeeCCeeEEEeCCCCCcEEEEEe--CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeC
Q 013827 282 KWAVAADVESLAWDPHAEHSFVVSL--EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 359 (436)
Q Consensus 282 ~~~~~~~i~~~~~~~~~~~~~~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 359 (436)
..........++++|+++.+.++-. .++.+.+.|..+. ........-..+ ..+++.|++...+++-..
T Consensus 111 ~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~---------~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~ 180 (381)
T COG3391 111 SIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN---------KVTATIPVGNTP-TGVAVDPDGNKVYVTNSD 180 (381)
T ss_pred EeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC---------eEEEEEecCCCc-ceEEECCCCCeEEEEecC
Confidence 3334447889999999876666666 4788888888876 334443333344 889999999545555667
Q ss_pred CCcEEEEECCCCCceeEEe---eCCCCCcEEEEEEcCCCCcEEEEEeCC--CcEEEEeCCCCccccc
Q 013827 360 DKMVKLWDLSNNQPSCIAS---RNPKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIWDTLSDAGISN 421 (436)
Q Consensus 360 d~~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~ 421 (436)
++.|.+.|........ .. ...-......+.++|+|.++.++...+ +.+...|..++.....
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 8999999977665221 11 011122346789999999766655555 6899999988877665
No 345
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.85 E-value=0.013 Score=55.33 Aligned_cols=241 Identities=14% Similarity=0.156 Sum_probs=127.4
Q ss_pred CCCCcEEEEe-eCC----CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCc
Q 013827 140 REKGNFMAVG-SME----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN 214 (436)
Q Consensus 140 s~~~~~l~~g-~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 214 (436)
||||++||.+ +.. ..|+++|+.+++.+.... .......+.|.+++..
T Consensus 132 Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i----------------------------~~~~~~~~~W~~d~~~ 183 (414)
T PF02897_consen 132 SPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI----------------------------ENPKFSSVSWSDDGKG 183 (414)
T ss_dssp TTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE----------------------------EEEESEEEEECTTSSE
T ss_pred CCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc----------------------------cccccceEEEeCCCCE
Confidence 8999999865 333 359999999875443210 1111223999999765
Q ss_pred EEEEEeCC----------CcEEEEeCCCCeE--EEEEcccCCC--eEEEEEcCCCCCEEEEEECCC---cEEEEecCCC-
Q 013827 215 ILASASAD----------KQVKIWDVAAGKC--NLTLEHHTDK--VQAVAWNHHSPQILLSGSFDR---SVVMKDARIS- 276 (436)
Q Consensus 215 ~l~s~~~d----------g~v~vwd~~~~~~--~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~d~---~i~~wd~~~~- 276 (436)
++.+...+ ..|+.|.+.+... ...+...... ...+..++++..+++...... .+.+.|+...
T Consensus 184 ~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 184 FFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 55555333 2378888876633 2444433332 568889999943344444433 4777787764
Q ss_pred ---CCccceEeeeCCe-eEEEeCCCCCcEEEEEe---CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCC--eEEEEec
Q 013827 277 ---THSGFKWAVAADV-ESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA--VCTISYN 347 (436)
Q Consensus 277 ---~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~ 347 (436)
.....+......+ ..+... +..+++... .++.|.-.++..... ......+..+... +..+...
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~------~~~~~~l~~~~~~~~l~~~~~~ 335 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSP------AEWWTVLIPEDEDVSLEDVSLF 335 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSG------GGEEEEEE--SSSEEEEEEEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEeccccccc------ccceeEEcCCCCceeEEEEEEE
Confidence 1222222222333 333333 334444432 245677777776521 0112244555553 4445443
Q ss_pred CCCCCEEEEEeCCC--cEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCC---CcEEEEeCCCCccc
Q 013827 348 PLVPNLLATGSTDK--MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK---GKLEIWDTLSDAGI 419 (436)
Q Consensus 348 p~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~ 419 (436)
+..+++....++ .|+++++..+......... ..+.|..+...+++..+.++.++- +++..||+.+++..
T Consensus 336 --~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 336 --KDYLVLSYRENGSSRLRVYDLDDGKESREIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp --TTEEEEEEEETTEEEEEEEETT-TEEEEEEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred --CCEEEEEEEECCccEEEEEECCCCcEEeeecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 435566655555 4888899833322233333 345577777777776555555442 56888899888753
No 346
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.84 E-value=0.013 Score=49.01 Aligned_cols=70 Identities=16% Similarity=0.197 Sum_probs=50.9
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeE-EEecCCCCcEEEEEeC
Q 013827 143 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASASA 221 (436)
Q Consensus 143 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~~ 221 (436)
|++++.|...|.+++.+.++++........ +.|.+ ....+++ .++..|+.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~----------------------------~~vk~~a~~d~~~-glIycgsh 113 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL----------------------------ETVKVRAQCDFDG-GLIYCGSH 113 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeeh----------------------------hhhccceEEcCCC-ceEEEecC
Confidence 788999999999999999988655433221 12221 2234554 59999999
Q ss_pred CCcEEEEeCCCCeEEEEEcc
Q 013827 222 DKQVKIWDVAAGKCNLTLEH 241 (436)
Q Consensus 222 dg~v~vwd~~~~~~~~~~~~ 241 (436)
|+..+..|..+..++...+.
T Consensus 114 d~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 114 DGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred CCcEEEecccccceEEeccc
Confidence 99999999998887776553
No 347
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.81 E-value=0.021 Score=50.52 Aligned_cols=251 Identities=14% Similarity=0.159 Sum_probs=131.4
Q ss_pred cccceeccCCceEEEEEec-CCcc----eeEEEEEecCCCCCCceeeecccccCcC--cceeecccCCCCCCCCCcEEEE
Q 013827 76 LEDMTINPNDAVIVCARNE-DDVS----HLEVYILEESDGGDPNLYVHHHIIIPAF--PLCMAWLDCPLKDREKGNFMAV 148 (436)
Q Consensus 76 v~~~~~sp~~~~l~~~~~~-~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~ 148 (436)
.-.+.++||++.+.++..- .... .=-|.+|+..+ +....+..+|.- ..++.. ......+.|++++++
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T-----L~~~~EI~iP~k~R~~~~~~-~~~~~ls~dgk~~~V 111 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT-----LSPTGEIEIPPKPRAQVVPY-KNMFALSADGKFLYV 111 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT-----TEEEEEEEETTS-B--BS---GGGEEE-TTSSEEEE
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCc-----CcccceEecCCcchheeccc-ccceEEccCCcEEEE
Confidence 3447889999988876442 1111 11355677664 333344445532 111111 122233777877776
Q ss_pred eeCC--CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEE
Q 013827 149 GSME--PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVK 226 (436)
Q Consensus 149 g~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 226 (436)
.... ..|.|-|+...+.+..+.. . .+..+ -|.++.-+.+-+.||++.
T Consensus 112 ~N~TPa~SVtVVDl~~~kvv~ei~~----------------------------P-GC~~i--yP~~~~~F~~lC~DGsl~ 160 (342)
T PF06433_consen 112 QNFTPATSVTVVDLAAKKVVGEIDT----------------------------P-GCWLI--YPSGNRGFSMLCGDGSLL 160 (342)
T ss_dssp EEESSSEEEEEEETTTTEEEEEEEG----------------------------T-SEEEE--EEEETTEEEEEETTSCEE
T ss_pred EccCCCCeEEEEECCCCceeeeecC----------------------------C-CEEEE--EecCCCceEEEecCCceE
Confidence 6543 5677777775544433211 1 11222 233334577888899998
Q ss_pred EEeCC-CCeEEEE----EcccCCCeE-EEEEcCCCCCEEEEEECCCcEEEEecCCCCCccc-eEe-----------eeCC
Q 013827 227 IWDVA-AGKCNLT----LEHHTDKVQ-AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-KWA-----------VAAD 288 (436)
Q Consensus 227 vwd~~-~~~~~~~----~~~~~~~v~-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~-----------~~~~ 288 (436)
-..+. .|+.... |.....++. .-.+...+ ..++--+.+|.|+--|+........ .+. -++.
T Consensus 161 ~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG 239 (342)
T PF06433_consen 161 TVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGG 239 (342)
T ss_dssp EEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-S
T ss_pred EEEECCCCCEeEeeccccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcc
Confidence 88887 4544322 112222332 22344444 4455578899999888876542210 110 1233
Q ss_pred eeEEEeCCCCCcEEEEEe-------CCC--cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEE-e
Q 013827 289 VESLAWDPHAEHSFVVSL-------EDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG-S 358 (436)
Q Consensus 289 i~~~~~~~~~~~~~~~~~-------~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~ 358 (436)
-.-+++++....+++.-. .|+ .|-+||+.+. +.+..+.. ..++.+|..+.+..-+|++. .
T Consensus 240 ~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~---------krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~ 309 (342)
T PF06433_consen 240 WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH---------KRVARIPL-EHPIDSIAVSQDDKPLLYALSA 309 (342)
T ss_dssp SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT---------EEEEEEEE-EEEESEEEEESSSS-EEEEEET
T ss_pred eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC---------eEEEEEeC-CCccceEEEccCCCcEEEEEcC
Confidence 445667665433333321 122 3667777776 55655553 24577999998774466554 4
Q ss_pred CCCcEEEEECCCCCce
Q 013827 359 TDKMVKLWDLSNNQPS 374 (436)
Q Consensus 359 ~d~~i~iwd~~~~~~~ 374 (436)
.++.+.+||..+++..
T Consensus 310 ~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 310 GDGTLDVYDAATGKLV 325 (342)
T ss_dssp TTTEEEEEETTT--EE
T ss_pred CCCeEEEEeCcCCcEE
Confidence 5789999999999843
No 348
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.79 E-value=0.013 Score=53.06 Aligned_cols=182 Identities=11% Similarity=0.069 Sum_probs=107.2
Q ss_pred CcEEEEEeC----------CCcEEEEeCCCC----eEEEEE--cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC
Q 013827 213 RNILASASA----------DKQVKIWDVAAG----KCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS 276 (436)
Q Consensus 213 ~~~l~s~~~----------dg~v~vwd~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 276 (436)
..+++.|.. .|.|.++++... ..+..+ ....++|++++-. .+ . ++++ ..+.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~-lv~~-~g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-R-LVVA-VGNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-E-EEEE-ETTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-E-EEEe-ecCEEEEEEccCc
Confidence 357777644 288999999884 122222 2357889998876 33 3 4433 3689999999988
Q ss_pred CCccceEe--eeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE--eccCCCeEEEEecCCCCC
Q 013827 277 THSGFKWA--VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL--HAHDKAVCTISYNPLVPN 352 (436)
Q Consensus 277 ~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~ 352 (436)
+....... ....+.++.... +++++|.....+.++..+... ..+..+ ......++++.|-+++ .
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~~~---~~I~vgD~~~sv~~~~~~~~~--------~~l~~va~d~~~~~v~~~~~l~d~-~ 185 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSVFK---NYILVGDAMKSVSLLRYDEEN--------NKLILVARDYQPRWVTAAEFLVDE-D 185 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEEET---TEEEEEESSSSEEEEEEETTT--------E-EEEEEEESS-BEEEEEEEE-SS-S
T ss_pred ccchhhheecceEEEEEEeccc---cEEEEEEcccCEEEEEEEccC--------CEEEEEEecCCCccEEEEEEecCC-c
Confidence 72222222 334566666553 589999988888888655421 112222 2235568889998777 6
Q ss_pred EEEEEeCCCcEEEEECCCC---------CceeEEeeCCCCCcEEEE---EEcCC--CCc-----EEEEEeCCCcEEEE
Q 013827 353 LLATGSTDKMVKLWDLSNN---------QPSCIASRNPKAGAVFSV---AFSED--SPF-----VLAIGGSKGKLEIW 411 (436)
Q Consensus 353 ~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~~v~~~---~~~~~--~~~-----~l~s~~~dg~i~iw 411 (436)
.++.+..+|.+.++..... .......+. ....|+++ ++.|. +.. .++.++.+|.|...
T Consensus 186 ~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 186 TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 9999999999999987631 111222222 23467777 55552 221 36668889998844
No 349
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.76 E-value=0.032 Score=51.21 Aligned_cols=287 Identities=15% Similarity=0.164 Sum_probs=137.5
Q ss_pred ccCCceEEEEEecCCc----ceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEE
Q 013827 82 NPNDAVIVCARNEDDV----SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI 157 (436)
Q Consensus 82 sp~~~~l~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v 157 (436)
|||+++++........ ..-.+++|+...+....+... ........| ||+|+.+|... ++.|.+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-----~~~~~~~~~-------sP~g~~~~~v~-~~nly~ 67 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-----PPKLQDAKW-------SPDGKYIAFVR-DNNLYL 67 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-----ETTBSEEEE--------SSSTEEEEEE-TTEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-----cccccccee-------ecCCCeeEEEe-cCceEE
Confidence 7899988886553221 134778888887622222111 112223445 99999999886 679999
Q ss_pred EeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCc-ccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEE
Q 013827 158 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH-TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN 236 (436)
Q Consensus 158 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~ 236 (436)
++..++...+- ...+ .. .. .. ...-.....- -+.-.++-|+|++..+++.--.+..|..+.+.
T Consensus 68 ~~~~~~~~~~l--T~dg--~~-~i---~n---G~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~----- 131 (353)
T PF00930_consen 68 RDLATGQETQL--TTDG--EP-GI---YN---GVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP----- 131 (353)
T ss_dssp ESSTTSEEEES--ES----TT-TE---EE---SB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE-----
T ss_pred EECCCCCeEEe--cccc--ce-eE---Ec---CccceeccccccccccceEECCCCCEEEEEEECCcCCceEEee-----
Confidence 98876522211 0000 00 00 00 0000000000 11235688999986444444445555554431
Q ss_pred EEEcccC---CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE-----eeeCCeeEEEeCCCCCcEEEE-EeC
Q 013827 237 LTLEHHT---DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-----AVAADVESLAWDPHAEHSFVV-SLE 307 (436)
Q Consensus 237 ~~~~~~~---~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~-~~~ 307 (436)
...... -.+..+.+-.-|.. -. .-.+.++|+.+++...... ....-+..+.|.+++..+++. ...
T Consensus 132 -~~~~~~~~yp~~~~~~YPk~G~~-np----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR 205 (353)
T PF00930_consen 132 -DYSPPDSQYPEVESIRYPKAGDP-NP----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNR 205 (353)
T ss_dssp -EESSSTESS-EEEEEE--BTTS--------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEET
T ss_pred -ccCCccccCCcccccccCCCCCc-CC----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEccc
Confidence 111111 13444444333311 11 1236678887766532111 123458899999987523333 333
Q ss_pred CC---cEEEEeCCCCCCCCCCCCCcccEEEeccCCCe---EEEEec-CCCCCEEEEEeCCCc--EEEEECCCCCceeEEe
Q 013827 308 DG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV---CTISYN-PLVPNLLATGSTDKM--VKLWDLSNNQPSCIAS 378 (436)
Q Consensus 308 dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~-p~~~~~l~~~~~d~~--i~iwd~~~~~~~~~~~ 378 (436)
+. .+.++|..++.. ..+. .......| ....|. +++..+|.....+|. |.+++...+. ...
T Consensus 206 ~q~~~~l~~~d~~tg~~-------~~~~-~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~---~~~ 274 (353)
T PF00930_consen 206 DQNRLDLVLCDASTGET-------RVVL-EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK---PRQ 274 (353)
T ss_dssp TSTEEEEEEEEECTTTC-------EEEE-EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE---EEE
T ss_pred CCCEEEEEEEECCCCce-------eEEE-EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc---eec
Confidence 32 366667766521 1122 22222222 355554 777567777777776 4455555554 234
Q ss_pred eCCCCCcEEE-EEEcCCCCcEEEEEeCCC----cEEEEeCC
Q 013827 379 RNPKAGAVFS-VAFSEDSPFVLAIGGSKG----KLEIWDTL 414 (436)
Q Consensus 379 ~~~~~~~v~~-~~~~~~~~~~l~s~~~dg----~i~iwd~~ 414 (436)
+....-.|.. +.|++++..++.++..++ .|+.-++.
T Consensus 275 lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 275 LTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp SS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred cccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 4444445644 778898887777777633 34444555
No 350
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.74 E-value=0.039 Score=51.56 Aligned_cols=174 Identities=10% Similarity=0.105 Sum_probs=88.7
Q ss_pred cceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEE-------cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEec
Q 013827 201 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-------EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 273 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~ 273 (436)
+.|.++.|..+ ..|+.-..||.+++||+.... ...+ ......+....+..+| ++.-..++.+.+..-
T Consensus 81 ~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G---ivvLt~~~~~~~v~n 154 (410)
T PF04841_consen 81 GRIVGMGWTDD--EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG---IVVLTGNNRFYVVNN 154 (410)
T ss_pred CCEEEEEECCC--CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC---EEEECCCCeEEEEeC
Confidence 78999999987 357778899999999986333 1111 1111222222333345 333334454444332
Q ss_pred CCCC-CccceEeeeCC---------eeE-EEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeE
Q 013827 274 RIST-HSGFKWAVAAD---------VES-LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 342 (436)
Q Consensus 274 ~~~~-~~~~~~~~~~~---------i~~-~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 342 (436)
.... ........... ... ..++.+. ...+....++.+.+.+-... ..+ ...+++.
T Consensus 155 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~------------~~i-~~~~~i~ 220 (410)
T PF04841_consen 155 IDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSF------------KQI-DSDGPII 220 (410)
T ss_pred ccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEcccc------------ccc-cCCCCeE
Confidence 2211 11100010000 000 1223322 23333334445553332221 011 1246899
Q ss_pred EEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCC
Q 013827 343 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP 396 (436)
Q Consensus 343 ~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 396 (436)
.++.||++ +++|.-..+|.+.+....-.+........ .......|.|..+..
T Consensus 221 ~iavSpng-~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 221 KIAVSPNG-KFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGNDA 272 (410)
T ss_pred EEEECCCC-CEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEEEEECCCc
Confidence 99999999 89999999999999876655533332222 233556677766543
No 351
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.72 E-value=0.045 Score=52.62 Aligned_cols=235 Identities=13% Similarity=0.110 Sum_probs=125.9
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccce-eEEEecCCCCcEEEEEe--
Q 013827 144 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV-LGLAWNKEFRNILASAS-- 220 (436)
Q Consensus 144 ~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~l~s~~-- 220 (436)
..++.++.+|.|+-+|.++++.+-....... . .....+ ....+.. .+++.++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~-----------------~-----~~~~~i~ssP~v~~---~~v~vg~~~ 165 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQ-----------------V-----PPGYTMTGAPTIVK---KLVIIGSSG 165 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCC-----------------c-----CcceEecCCCEEEC---CEEEEeccc
Confidence 6778888899999999988776543211000 0 000001 1111211 1344443
Q ss_pred -------CCCcEEEEeCCCCeEEEEEcccCCC--------------------e-EEEEEcCCCCCEEEEEECCC------
Q 013827 221 -------ADKQVKIWDVAAGKCNLTLEHHTDK--------------------V-QAVAWNHHSPQILLSGSFDR------ 266 (436)
Q Consensus 221 -------~dg~v~vwd~~~~~~~~~~~~~~~~--------------------v-~~~~~~~~~~~~l~s~~~d~------ 266 (436)
.++.+.-+|..+++.+..+...... + ....+.+.+ ..++.++.++
T Consensus 166 ~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~ 244 (488)
T cd00216 166 AEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWG 244 (488)
T ss_pred cccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccC
Confidence 4678999999999887766432110 1 123344444 5666676554
Q ss_pred ------------cEEEEecCCCCCccceEeeeCCe------eEEEeC----CCC--CcEEEEEeCCCcEEEEeCCCCCCC
Q 013827 267 ------------SVVMKDARISTHSGFKWAVAADV------ESLAWD----PHA--EHSFVVSLEDGTIKGFDIRTAKSD 322 (436)
Q Consensus 267 ------------~i~~wd~~~~~~~~~~~~~~~~i------~~~~~~----~~~--~~~~~~~~~dg~i~i~d~~~~~~~ 322 (436)
.|.-+|..+++..-......... ....+. -++ ...+++++.+|.+..+|.+++
T Consensus 245 ~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG--- 321 (488)
T cd00216 245 GRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTG--- 321 (488)
T ss_pred CccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCC---
Confidence 68888888777653221111100 000110 112 136788889999999999998
Q ss_pred CCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEE------------------eCCCcEEEEECCCCCceeEEeeCCCC-
Q 013827 323 PDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG------------------STDKMVKLWDLSNNQPSCIASRNPKA- 383 (436)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~------------------~~d~~i~iwd~~~~~~~~~~~~~~~~- 383 (436)
+.+...... ...++.+| ..++.+ ..+|.+.-.|+.+++..-......+.
T Consensus 322 ------~~~W~~~~~---~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~ 389 (488)
T cd00216 322 ------KLISARPEV---EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRD 389 (488)
T ss_pred ------cEeeEeEee---ccccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcccc
Confidence 333332211 11233333 222221 23577888888888742222222111
Q ss_pred -----CcE--EEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 384 -----GAV--FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 384 -----~~v--~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
.+. ..+.. .+. ++..++.||.|+.+|..+|+.+.+.
T Consensus 390 ~~~~g~~~~~~~~~~--~g~-~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 390 SWNIGFPHWGGSLAT--AGN-LVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred ccccCCcccCcceEe--cCC-eEEEECCCCeEEEEECCCCceeeEE
Confidence 111 11222 334 4667889999999999999988653
No 352
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.72 E-value=0.025 Score=52.80 Aligned_cols=180 Identities=12% Similarity=0.092 Sum_probs=93.3
Q ss_pred cEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEe---eeCCe-----eEEEeC
Q 013827 224 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---VAADV-----ESLAWD 295 (436)
Q Consensus 224 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~~~i-----~~~~~~ 295 (436)
.|+||+.. |+.+..+.-..+.+.++.|+.+. .|+.-..||.++++|+.... ....+ ....+ ....+.
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCce--eechhhhccccCcccccccccccC
Confidence 59999854 56666665445899999999865 56677899999999987444 11111 11122 222222
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCC-CCCC-CCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc
Q 013827 296 PHAEHSFVVSLEDGTIKGFDIRTAKSD-PDST-SQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 373 (436)
Q Consensus 296 ~~~~~~~~~~~~dg~i~i~d~~~~~~~-~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~ 373 (436)
.+| ++.-..++.+.+..--..... .... ..........+........++.+. ...+....++.+.+.+-...+
T Consensus 137 ~~G---ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~~- 211 (410)
T PF04841_consen 137 KNG---IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSFK- 211 (410)
T ss_pred CCC---EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEccccc-
Confidence 223 343444555444432221100 0000 000000001111110112334443 344444455556544433221
Q ss_pred eeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccc
Q 013827 374 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 419 (436)
Q Consensus 374 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (436)
. .. ..+++..|+.||+|++ +|.-..+|.+.+....-.+.+
T Consensus 212 -~---i~-~~~~i~~iavSpng~~-iAl~t~~g~l~v~ssDf~~~~ 251 (410)
T PF04841_consen 212 -Q---ID-SDGPIIKIAVSPNGKF-IALFTDSGNLWVVSSDFSEKL 251 (410)
T ss_pred -c---cc-CCCCeEEEEECCCCCE-EEEEECCCCEEEEECccccee
Confidence 1 11 2358999999999995 888888999988876544443
No 353
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.00057 Score=64.49 Aligned_cols=129 Identities=15% Similarity=0.211 Sum_probs=93.3
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
+..+++++.|+..|.+++|+-..+..... ...+..+.+..+..+++ ..++|.|
T Consensus 42 dst~~~l~~GsS~G~lyl~~R~~~~~~~~--------------------------~~~~~~~~~~~~~vs~~-e~lvAag 94 (726)
T KOG3621|consen 42 DATEEYLAMGSSAGSVYLYNRHTGEMRKL--------------------------KNEGATGITCVRSVSSV-EYLVAAG 94 (726)
T ss_pred ecCCceEEEecccceEEEEecCchhhhcc--------------------------cccCccceEEEEEecch-hHhhhhh
Confidence 55799999999999999999876544321 12234455666777887 4689999
Q ss_pred eCCCcEEEEeCCCCeEE-----EEE-cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC----CccceEeeeCCe
Q 013827 220 SADKQVKIWDVAAGKCN-----LTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST----HSGFKWAVAADV 289 (436)
Q Consensus 220 ~~dg~v~vwd~~~~~~~-----~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~~~i 289 (436)
+..|.|.++-+..+.+. ..+ +.|...|++++|++++ ..+++|...|+|..-.+.... .........+.|
T Consensus 95 t~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~I 173 (726)
T KOG3621|consen 95 TASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEI 173 (726)
T ss_pred cCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechhhhhccccceeeccCcce
Confidence 99999999988764321 112 3478899999999999 899999999999988877621 122234456777
Q ss_pred eEEEeCC
Q 013827 290 ESLAWDP 296 (436)
Q Consensus 290 ~~~~~~~ 296 (436)
..+....
T Consensus 174 VQlD~~q 180 (726)
T KOG3621|consen 174 VQLDYLQ 180 (726)
T ss_pred EEeeccc
Confidence 7777664
No 354
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.69 E-value=0.0012 Score=65.06 Aligned_cols=147 Identities=16% Similarity=0.219 Sum_probs=94.6
Q ss_pred CEEEEE-ECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCC------CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCc
Q 013827 257 QILLSG-SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH------AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ 329 (436)
Q Consensus 257 ~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~ 329 (436)
++|+.. .....|+-.|+..++.+.. +.....+.-..+.|+ .....++|-.+..+..||.|-...... ..
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~e-W~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v---~~ 569 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEE-WKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV---DS 569 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEE-eecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee---ec
Confidence 444433 3457788888888877653 332222323344442 123567888899999999997521000 00
Q ss_pred ccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEE
Q 013827 330 SSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLE 409 (436)
Q Consensus 330 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~ 409 (436)
....+ ......+|++-+.+| +||+|+.+|.||+||--..+ ....+++-..+|.+|..+.||+++|||+ +..|.
T Consensus 570 ~~k~Y-~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~--AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLl 642 (794)
T PF08553_consen 570 QSKQY-SSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKR--AKTALPGLGDPIIGIDVTADGKWILATC--KTYLL 642 (794)
T ss_pred ccccc-ccCCCceEEEecCCc--eEEEEeCCCcEEeecccchh--hhhcCCCCCCCeeEEEecCCCcEEEEee--cceEE
Confidence 01111 234456778777655 89999999999999954322 3445667778999999999999877655 56788
Q ss_pred EEeCC
Q 013827 410 IWDTL 414 (436)
Q Consensus 410 iwd~~ 414 (436)
|++..
T Consensus 643 Li~t~ 647 (794)
T PF08553_consen 643 LIDTL 647 (794)
T ss_pred EEEEe
Confidence 88874
No 355
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.67 E-value=0.0088 Score=55.96 Aligned_cols=222 Identities=14% Similarity=0.162 Sum_probs=108.3
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
+|+|++++++ .||...|+....... ...+.-..+.|.+. +.+|+-
T Consensus 41 npngr~v~V~-g~geY~iyt~~~~r~--------------------------------k~~G~g~~~vw~~~--n~yAv~ 85 (443)
T PF04053_consen 41 NPNGRFVLVC-GDGEYEIYTALAWRN--------------------------------KAFGSGLSFVWSSR--NRYAVL 85 (443)
T ss_dssp -TTSSEEEEE-ETTEEEEEETTTTEE--------------------------------EEEEE-SEEEE-TS--SEEEEE
T ss_pred CCCCCEEEEE-cCCEEEEEEccCCcc--------------------------------cccCceeEEEEecC--ccEEEE
Confidence 8999999995 478888887321110 23455677889985 367777
Q ss_pred eCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCC
Q 013827 220 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 299 (436)
Q Consensus 220 ~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 299 (436)
...++|.|+.--+.+....++. ...+..+-. | .+|...+. +.|.+||..+.+.+.... .. +|..+.|++++.
T Consensus 86 ~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~---G-~LL~~~~~-~~i~~yDw~~~~~i~~i~-v~-~vk~V~Ws~~g~ 157 (443)
T PF04053_consen 86 ESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG---G-NLLGVKSS-DFICFYDWETGKLIRRID-VS-AVKYVIWSDDGE 157 (443)
T ss_dssp -TTS-EEEEETTEE-TT------SS-EEEEE----S-SSEEEEET-TEEEEE-TTT--EEEEES-S--E-EEEEE-TTSS
T ss_pred ECCCeEEEEEcCccccceEEcC-CcccceEEc---C-cEEEEECC-CCEEEEEhhHcceeeEEe-cC-CCcEEEEECCCC
Confidence 7788999963222333233432 123343333 5 66665554 489999999887655322 22 389999999875
Q ss_pred cEEEEEeCCCcEEEEeCCCC--CCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEE
Q 013827 300 HSFVVSLEDGTIKGFDIRTA--KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 377 (436)
Q Consensus 300 ~~~~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 377 (436)
+++..+.+ .+.+++.... ..............+..-...|.+..|..+ -++.| +.. +++. +..++...+.
T Consensus 158 -~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYt-T~~-~lkY--l~~Ge~~~i~ 229 (443)
T PF04053_consen 158 -LVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYT-TSN-HLKY--LVNGETGIIA 229 (443)
T ss_dssp -EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE--TT-EEEE--EETTEEEEEE
T ss_pred -EEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEE-cCC-eEEE--EEcCCcceEE
Confidence 55555544 5666654321 000000000123333333677888888853 23333 333 6766 4445433333
Q ss_pred eeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 378 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 378 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
.+. .++.=+...|... .+.....|+.+..+.+...
T Consensus 230 ~ld---~~~yllgy~~~~~-~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 230 HLD---KPLYLLGYLPKEN-RLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp E-S---S--EEEEEETTTT-EEEEE-TT--EEEEE--HH
T ss_pred EcC---CceEEEEEEccCC-EEEEEECCCCEEEEEECHH
Confidence 333 3677777778655 4666888888888877543
No 356
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.63 E-value=0.052 Score=50.09 Aligned_cols=87 Identities=16% Similarity=0.135 Sum_probs=55.2
Q ss_pred EEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCc----EEEEEEc--------------CC
Q 013827 333 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA----VFSVAFS--------------ED 394 (436)
Q Consensus 333 ~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----v~~~~~~--------------~~ 394 (436)
.+......+.++..+|.+ .+.|+...-|+|.++|+..+....+. .+-.+. +....-. ..
T Consensus 302 ~l~D~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~vvrmW--KGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSG-RLAAVTDSLGRVLLIDVARGIVVRMW--KGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred eeccCCceEEEEEECCCC-CEEEEEcCCCcEEEEECCCChhhhhh--ccCccceEEEEEeecccccccccccccCCCCcc
Confidence 344455668899999997 88888888899999999887532221 221111 1000000 01
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 395 SPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 395 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
..++++-+-.-|.|.||.++.+..+...
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCEEEEE
Confidence 1234445667899999999999887654
No 357
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.63 E-value=0.0067 Score=60.09 Aligned_cols=143 Identities=17% Similarity=0.183 Sum_probs=97.5
Q ss_pred CcEEEEE-eCCCcEEEEeCCCCeEEEEEcccCCC-eEEEEEcCC----CCCEEEEEECCCcEEEEecCCCCCc-c----c
Q 013827 213 RNILASA-SADKQVKIWDVAAGKCNLTLEHHTDK-VQAVAWNHH----SPQILLSGSFDRSVVMKDARISTHS-G----F 281 (436)
Q Consensus 213 ~~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~----~~~~l~s~~~d~~i~~wd~~~~~~~-~----~ 281 (436)
.++|+.- .....|+-.|++.|+.+.....+... |..++-... .+..-+.|-.++.+..||+|..... . .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 4444443 45578999999999999999877654 555433211 1134567888999999999975421 1 1
Q ss_pred eEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCC
Q 013827 282 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK 361 (436)
Q Consensus 282 ~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~ 361 (436)
.........+++-..+| .+|+|+.+|.||+||--.. .....+.+-..+|..|..+.|| ++|++.+ +.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~---------~AKT~lp~lG~pI~~iDvt~DG-kwilaTc-~t 639 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGK---------RAKTALPGLGDPIIGIDVTADG-KWILATC-KT 639 (794)
T ss_pred ccccCCCceEEEecCCc--eEEEEeCCCcEEeecccch---------hhhhcCCCCCCCeeEEEecCCC-cEEEEee-cc
Confidence 22344567777777665 7999999999999994321 3345566778999999999999 6665544 44
Q ss_pred cEEEEEC
Q 013827 362 MVKLWDL 368 (436)
Q Consensus 362 ~i~iwd~ 368 (436)
.+.+++.
T Consensus 640 yLlLi~t 646 (794)
T PF08553_consen 640 YLLLIDT 646 (794)
T ss_pred eEEEEEE
Confidence 5666664
No 358
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.0069 Score=55.63 Aligned_cols=143 Identities=18% Similarity=0.265 Sum_probs=96.2
Q ss_pred EEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCC------cEEEEEeCCCcEEEEeCCCCCCCCCCCCCccc
Q 013827 258 ILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE------HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS 331 (436)
Q Consensus 258 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 331 (436)
++.++.....++-.|+..++.+. .+.....|+-+.+.|+.. ..-++|-.+..|.-||.|-... ..+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVe-EWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-------~kl 419 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVE-EWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-------NKL 419 (644)
T ss_pred EeeCCCCcCcceeeecccceeee-EeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCc-------cee
Confidence 44556666678888888877665 455555588888887642 1245677788999999985421 112
Q ss_pred EEEeccC----CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCc
Q 013827 332 FTLHAHD----KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK 407 (436)
Q Consensus 332 ~~~~~~~----~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 407 (436)
...+.|+ ....|.+-..+ .++++|+.+|.|++||.-... ....+++-..+|..+..+.+|.++|+|+ +..
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~s--G~IvvgS~~GdIRLYdri~~~--AKTAlPgLG~~I~hVdvtadGKwil~Tc--~ty 493 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTES--GYIVVGSLKGDIRLYDRIGRR--AKTALPGLGDAIKHVDVTADGKWILATC--KTY 493 (644)
T ss_pred eeeeccccccccccceeeecCC--ceEEEeecCCcEEeehhhhhh--hhhcccccCCceeeEEeeccCcEEEEec--ccE
Confidence 2223332 23445555544 589999999999999984433 3445677788999999999999766544 567
Q ss_pred EEEEeCC
Q 013827 408 LEIWDTL 414 (436)
Q Consensus 408 i~iwd~~ 414 (436)
+.+-++.
T Consensus 494 LlLi~t~ 500 (644)
T KOG2395|consen 494 LLLIDTL 500 (644)
T ss_pred EEEEEEe
Confidence 7777764
No 359
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00041 Score=64.59 Aligned_cols=80 Identities=20% Similarity=0.269 Sum_probs=68.0
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEE-EEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 338 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF-SVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 338 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
...+..+.|+|.. .++|++..+|.|.+..++ .+ .+..++-+...++ +++|.|||+ +||.|-.||+|++-|+.++
T Consensus 20 ~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n-~q--Rlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 20 PINIKRIEWNPKM-DLIATRTEKGELLIHRLN-WQ--RLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred ccceEEEEEcCcc-chhheeccCCcEEEEEec-cc--eeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCC
Confidence 3457789999988 899999999999999998 44 4667775555666 999999999 6999999999999999999
Q ss_pred cccccc
Q 013827 417 AGISNR 422 (436)
Q Consensus 417 ~~~~~~ 422 (436)
..+...
T Consensus 95 ~~l~~~ 100 (665)
T KOG4640|consen 95 GRLVSF 100 (665)
T ss_pred Cceecc
Confidence 988764
No 360
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.59 E-value=0.047 Score=48.51 Aligned_cols=228 Identities=10% Similarity=-0.000 Sum_probs=124.8
Q ss_pred CCCCCc-EEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEE
Q 013827 139 DREKGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 217 (436)
Q Consensus 139 ~s~~~~-~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 217 (436)
|.++.. ++.+--..+.|.-|+..+++... + .+.+.+.++..-..+. .|+
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~----------------------------~-~~p~~~~~~~~~d~~g-~Lv 81 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKRV----------------------------F-PSPGGFSSGALIDAGG-RLI 81 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceEE----------------------------E-ECCCCcccceeecCCC-eEE
Confidence 356655 44555566788888776432211 0 1233344444444433 555
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEc----c-cCCCeEEEEEcCCCCCEEEEEEC------C---CcEEEEecC-CCCCccce
Q 013827 218 SASADKQVKIWDVAAGKCNLTLE----H-HTDKVQAVAWNHHSPQILLSGSF------D---RSVVMKDAR-ISTHSGFK 282 (436)
Q Consensus 218 s~~~dg~v~vwd~~~~~~~~~~~----~-~~~~v~~~~~~~~~~~~l~s~~~------d---~~i~~wd~~-~~~~~~~~ 282 (436)
++. .-+.+++.+++..+..+. + -....+.+...|+| .+.++... + ..-.+|-+. .+......
T Consensus 82 ~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG-~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~ 158 (307)
T COG3386 82 ACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDG-RIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL 158 (307)
T ss_pred EEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCC-CEEEeCCCccccCccccCCcceEEEEcCCCCEEEee
Confidence 554 346777776665533331 1 12345678888988 55444332 0 111344433 23333322
Q ss_pred EeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCC-
Q 013827 283 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK- 361 (436)
Q Consensus 283 ~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~- 361 (436)
..+-...+.++|+|++..++++=+..+.|.-|++........ ............+..-.++...+| .+.+++..+|
T Consensus 159 ~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~--~~~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~ 235 (307)
T COG3386 159 DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIG--GRRGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGG 235 (307)
T ss_pred cCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccC--CcceEEEccCCCCCCCceEEeCCC-CEEEecccCCc
Confidence 333455789999999976667767778899888863111110 011122222345666778888887 5654444443
Q ss_pred cEEEEECCCCCceeEEeeCCCCCcEEEEEEcC-CCCcEEEEEeCC
Q 013827 362 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE-DSPFVLAIGGSK 405 (436)
Q Consensus 362 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~d 405 (436)
.|.+|+.. +++.....++ ...+++++|-- +.+.|++++...
T Consensus 236 ~v~~~~pd-G~l~~~i~lP--~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 236 RVVRFNPD-GKLLGEIKLP--VKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred eEEEECCC-CcEEEEEECC--CCCCccceEeCCCcCEEEEEecCC
Confidence 89999988 6644444444 24677888854 555567766655
No 361
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00044 Score=64.37 Aligned_cols=94 Identities=16% Similarity=0.332 Sum_probs=78.8
Q ss_pred ccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeE-EEEEcCCCCCEEEEEECCCcEEEEecCCCCC
Q 013827 200 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ-AVAWNHHSPQILLSGSFDRSVVMKDARISTH 278 (436)
Q Consensus 200 ~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 278 (436)
...|.-+.|+|.- .++|.+..+|.|.+..+. .+.+.++.-+...++ +++|.||| ++++.|-.||+|++.|..++..
T Consensus 20 ~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKM-DLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCcc-chhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCCc
Confidence 4568889999984 699999999999999988 677888887777887 99999999 9999999999999999998876
Q ss_pred ccc-eEeeeCCeeEEEeCC
Q 013827 279 SGF-KWAVAADVESLAWDP 296 (436)
Q Consensus 279 ~~~-~~~~~~~i~~~~~~~ 296 (436)
... .......+.++.|++
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 643 234556677788875
No 362
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.57 E-value=0.01 Score=53.69 Aligned_cols=176 Identities=14% Similarity=0.175 Sum_probs=107.2
Q ss_pred CcEEEEeCCCCeEEEEEccc-CCCeEEE---EEcCC---CCCEEEEEEC----------CCcEEEEecCCC----CCcc-
Q 013827 223 KQVKIWDVAAGKCNLTLEHH-TDKVQAV---AWNHH---SPQILLSGSF----------DRSVVMKDARIS----THSG- 280 (436)
Q Consensus 223 g~v~vwd~~~~~~~~~~~~~-~~~v~~~---~~~~~---~~~~l~s~~~----------d~~i~~wd~~~~----~~~~- 280 (436)
..|++.|..+.+.+..+.-. ...+.++ .+..+ ...++++|+. .|.|.++++... ....
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35888888877776655322 2334444 33332 1367777653 288999999884 1222
Q ss_pred -ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec--cCCCeEEEEecCCCCCEEEEE
Q 013827 281 -FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNPLVPNLLATG 357 (436)
Q Consensus 281 -~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~ 357 (436)
.....+++|++++-.. + . ++++. .+.|.+|++...+ .+..... ....+.++... + .++++|
T Consensus 82 i~~~~~~g~V~ai~~~~-~-~-lv~~~-g~~l~v~~l~~~~---------~l~~~~~~~~~~~i~sl~~~--~-~~I~vg 145 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFN-G-R-LVVAV-GNKLYVYDLDNSK---------TLLKKAFYDSPFYITSLSVF--K-NYILVG 145 (321)
T ss_dssp EEEEEESS-EEEEEEET-T-E-EEEEE-TTEEEEEEEETTS---------SEEEEEEE-BSSSEEEEEEE--T-TEEEEE
T ss_pred EEEEeecCcceEhhhhC-C-E-EEEee-cCEEEEEEccCcc---------cchhhheecceEEEEEEecc--c-cEEEEE
Confidence 2235678899988663 3 3 44333 4789999998872 1222222 23356666655 3 799999
Q ss_pred eCCCcEEEEECCCCC-ceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 358 STDKMVKLWDLSNNQ-PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 358 ~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
.....+.++..+... .............++++.|-+++. .++.+..+|.+.++....
T Consensus 146 D~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 146 DAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-S
T ss_pred EcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECC
Confidence 998888887554322 122333333455688999987776 588899999999998863
No 363
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.55 E-value=0.0042 Score=53.05 Aligned_cols=178 Identities=11% Similarity=0.122 Sum_probs=98.1
Q ss_pred EEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccce-EeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEe
Q 013827 237 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD 315 (436)
Q Consensus 237 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d 315 (436)
+.+.+-...+..++|+|+...++++....+.|.-++.. ++.+... ..-.+....+++..++ .++++.-.++.+.+++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNG-RYVLSEERDQRLYIFT 92 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STT-EEEEEETTTTEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCC-EEEEEEcCCCcEEEEE
Confidence 34555666799999999875788888888888888864 3333322 1223567888887654 4555555689999999
Q ss_pred CCCCCCCCCCCCCcccEEE-----eccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC---CCceeEEee------CC
Q 013827 316 IRTAKSDPDSTSQQSSFTL-----HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN---NQPSCIASR------NP 381 (436)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~------~~ 381 (436)
+........ ......+ ..+...+-.++|.|.+ +.|+.+-+..-..+|.++. ......... ..
T Consensus 93 ~~~~~~~~~---~~~~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 93 IDDDTTSLD---RADVQKISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp E----TT-----EEEEEEEE---S---SS--EEEEEETTT-TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred Eeccccccc---hhhceEEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence 855422111 0001111 1345668999999987 5555566666666776654 111111111 12
Q ss_pred CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 382 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 382 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
....+.+++++|....+++.+..+..|..+| .+|+.+..
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~ 207 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSS 207 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEE
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEE
Confidence 2345789999998777888888889999999 56665543
No 364
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.52 E-value=0.0091 Score=43.24 Aligned_cols=99 Identities=23% Similarity=0.267 Sum_probs=67.1
Q ss_pred EeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 013827 293 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 293 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
.|..+|.+.|++|+.|..|++|+-... +..+. -...|+.+.-... ..++.+-.+|+|-+|+....
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~e~-----------~~Ei~-e~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~~R- 73 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGDEI-----------VAEIT-ETDKVTSLCSLGG--GRFAYALANGTVGVYDRSQR- 73 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCCcE-----------EEEEe-cccceEEEEEcCC--CEEEEEecCCEEEEEeCcce-
Confidence 345567789999999999999986533 44444 3456777766653 57999999999999987543
Q ss_pred ceeEEeeCCCCCcEEEEEEcC---CCCcEEEEEeCCCcEEE
Q 013827 373 PSCIASRNPKAGAVFSVAFSE---DSPFVLAIGGSKGKLEI 410 (436)
Q Consensus 373 ~~~~~~~~~~~~~v~~~~~~~---~~~~~l~s~~~dg~i~i 410 (436)
++...... .+.++++.. ||..-|++|-.+|.|-+
T Consensus 74 ---lWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 74 ---LWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ---eeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 33333322 355555433 44334788988988753
No 365
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.49 E-value=0.017 Score=56.21 Aligned_cols=196 Identities=16% Similarity=0.231 Sum_probs=104.4
Q ss_pred eeEEEecCCCCcEEEEEeCC------CcEEEEeCCCCeEEEE--EcccCCCeEEEEEcCCCCCEEEEEECCCc-----EE
Q 013827 203 VLGLAWNKEFRNILASASAD------KQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFDRS-----VV 269 (436)
Q Consensus 203 v~~~~~~~~~~~~l~s~~~d------g~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~~-----i~ 269 (436)
-.+++...+ .+.++|+.| .++..||..+++-... +............ +| .+.++|+.||. +-
T Consensus 325 ~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g-~iYavGG~dg~~~l~svE 399 (571)
T KOG4441|consen 325 RVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DG-KLYAVGGFDGEKSLNSVE 399 (571)
T ss_pred cccEEEECC--EEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CC-EEEEEeccccccccccEE
Confidence 445555554 588899988 3577888887764331 1111111111111 33 78889998864 66
Q ss_pred EEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCC------cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEE
Q 013827 270 MKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG------TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT 343 (436)
Q Consensus 270 ~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 343 (436)
.||..+.+-.... .............-++.+.++|+.++ ++..||..+.. +..+..+.........
T Consensus 400 ~YDp~~~~W~~va-~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~-------W~~~~~M~~~R~~~g~ 471 (571)
T KOG4441|consen 400 CYDPVTNKWTPVA-PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT-------WTLIAPMNTRRSGFGV 471 (571)
T ss_pred EecCCCCcccccC-CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc-------eeecCCcccccccceE
Confidence 6777655422111 11111222222222336788887554 56788887762 3333333333333333
Q ss_pred EEecCCCCCEEEEEeCCCc-----EEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCc-----EEEEeC
Q 013827 344 ISYNPLVPNLLATGSTDKM-----VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK-----LEIWDT 413 (436)
Q Consensus 344 ~~~~p~~~~~l~~~~~d~~-----i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~-----i~iwd~ 413 (436)
..+. + .+.+.|+.|+. |..||..+.++..+.........+....+ ++. +++.|+.||. |..||.
T Consensus 472 a~~~--~-~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~-ly~vGG~~~~~~l~~ve~ydp 545 (571)
T KOG4441|consen 472 AVLN--G-KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGK-LYAVGGFDGNNNLNTVECYDP 545 (571)
T ss_pred EEEC--C-EEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCE-EEEEecccCccccceeEEcCC
Confidence 3332 2 67788887763 78899998886555333333333222222 233 7888888865 566666
Q ss_pred CCCc
Q 013827 414 LSDA 417 (436)
Q Consensus 414 ~~~~ 417 (436)
.+.+
T Consensus 546 ~~d~ 549 (571)
T KOG4441|consen 546 ETDT 549 (571)
T ss_pred CCCc
Confidence 5443
No 366
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.47 E-value=0.02 Score=55.79 Aligned_cols=200 Identities=8% Similarity=0.024 Sum_probs=102.9
Q ss_pred cccccceeccCCceEEEEEecC---CcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEee
Q 013827 74 EDLEDMTINPNDAVIVCARNED---DVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 150 (436)
Q Consensus 74 ~~v~~~~~sp~~~~l~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 150 (436)
..+.+.++||||..++...... .-..-.+|+.+.... ...+..... ...+.|+|||+.|++..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~~~lt~g~~-------------~t~PsWspDG~~lw~v~ 415 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-AVQVLEGHS-------------LTRPSWSLDADAVWVVV 415 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-ceeeecCCC-------------CCCceECCCCCceEEEe
Confidence 4688999999999998876310 012347787775332 112211111 13345599999888775
Q ss_pred CC-CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEE--
Q 013827 151 ME-PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI-- 227 (436)
Q Consensus 151 ~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~v-- 227 (436)
.. ..+++.+......+....+- ..... . .....|..+.|+|||. .++... ++.|.+
T Consensus 416 dg~~~~~v~~~~~~gql~~~~vd----------------~ge~~--~-~~~g~Issl~wSpDG~-RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 416 DGNTVVRVIRDPATGQLARTPVD----------------ASAVA--S-RVPGPISELQLSRDGV-RAAMII-GGKVYLAV 474 (591)
T ss_pred cCcceEEEeccCCCceEEEEecc----------------Cchhh--h-ccCCCcCeEEECCCCC-EEEEEE-CCEEEEEE
Confidence 33 22222222111111000000 00000 0 2345799999999986 444433 477776
Q ss_pred -EeCCCCeE-E---EEE-cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccce-E--eeeCCeeEEEeCCCC
Q 013827 228 -WDVAAGKC-N---LTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-W--AVAADVESLAWDPHA 298 (436)
Q Consensus 228 -wd~~~~~~-~---~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~--~~~~~i~~~~~~~~~ 298 (436)
-....|.. + ..+ ......+.++.|..++ .+ +++..++.-.+|.+.-....... . ....++..++-.+.
T Consensus 475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~-~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~- 551 (591)
T PRK13616 475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGD-SL-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS- 551 (591)
T ss_pred EEeCCCCceeecccEEeecccCCccccceEecCC-EE-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-
Confidence 44344531 1 112 2233446889999998 54 45555555555655433222212 1 12456777776662
Q ss_pred CcEEEEEeCCCcEEE
Q 013827 299 EHSFVVSLEDGTIKG 313 (436)
Q Consensus 299 ~~~~~~~~~dg~i~i 313 (436)
.+++...++.+.+
T Consensus 552 --~iyv~~~~g~~~l 564 (591)
T PRK13616 552 --TVYVTDARAVLQL 564 (591)
T ss_pred --eEEEEcCCceEEe
Confidence 3555566664443
No 367
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.47 E-value=0.00049 Score=39.28 Aligned_cols=39 Identities=33% Similarity=0.382 Sum_probs=33.9
Q ss_pred CeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEe
Q 013827 233 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD 272 (436)
Q Consensus 233 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd 272 (436)
+++...+..|...|.++.|.+.+ ..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 34566777888999999999988 8999999999999996
No 368
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.43 E-value=0.074 Score=46.91 Aligned_cols=240 Identities=17% Similarity=0.138 Sum_probs=128.0
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEe
Q 013827 141 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 220 (436)
Q Consensus 141 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 220 (436)
..++.|+.|+.+| +.++++......... .+...|..+...|+- +.|++-+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i----------------------------~~~~~I~ql~vl~~~-~~llvLs 54 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI----------------------------LKLSSITQLSVLPEL-NLLLVLS 54 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE----------------------------eecceEEEEEEeccc-CEEEEEc
Confidence 3588899999988 899998221111110 133349999999984 3554444
Q ss_pred CCCcEEEEeCCCCeEEEEE--------------cccCCCeEEEE--EcCCCCCEEEEEECCCcEEEEecCCCC----Ccc
Q 013827 221 ADKQVKIWDVAAGKCNLTL--------------EHHTDKVQAVA--WNHHSPQILLSGSFDRSVVMKDARIST----HSG 280 (436)
Q Consensus 221 ~dg~v~vwd~~~~~~~~~~--------------~~~~~~v~~~~--~~~~~~~~l~s~~~d~~i~~wd~~~~~----~~~ 280 (436)
|+.+.++++..-...... ......+...+ -...+ ...+.......|.+|...... ...
T Consensus 55 -d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va~kk~i~i~~~~~~~~~f~~~~ 132 (275)
T PF00780_consen 55 -DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEG-SRRLCVAVKKKILIYEWNDPRNSFSKLL 132 (275)
T ss_pred -CCccEEEEchhhccccccccccccccccccccccccCCeeEEeecccccc-ceEEEEEECCEEEEEEEECCccccccee
Confidence 499999998754333210 11223344444 12333 334444445588888877642 233
Q ss_pred ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCccc---EEEeccCCCeEEEEecCCCCCEEEEE
Q 013827 281 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS---FTLHAHDKAVCTISYNPLVPNLLATG 357 (436)
Q Consensus 281 ~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~~l~~~ 357 (436)
.....+..+..++|.+ ..++.|..+ ...+.|+.++....-....... ........++..+.... + .+|++.
T Consensus 133 ke~~lp~~~~~i~~~~---~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-e~Ll~~ 206 (275)
T PF00780_consen 133 KEISLPDPPSSIAFLG---NKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-N-EFLLCY 206 (275)
T ss_pred EEEEcCCCcEEEEEeC---CEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC-c-eEEEEe
Confidence 3455678899999995 457777654 4778898865321100000000 00011123344444433 3 455543
Q ss_pred eCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccCC
Q 013827 358 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 426 (436)
Q Consensus 358 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (436)
|..-.+.|... ++.....+.- ...+.++++. .+|+++ .+ ++.|.||++.+++.++..-...
T Consensus 207 --~~~g~fv~~~G-~~~r~~~i~W-~~~p~~~~~~--~pyli~-~~-~~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 207 --DNIGVFVNKNG-EPSRKSTIQW-SSAPQSVAYS--SPYLIA-FS-SNSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred --cceEEEEcCCC-CcCcccEEEc-CCchhEEEEE--CCEEEE-EC-CCEEEEEECcCCcEEEEEECCC
Confidence 33333344443 2212111111 2245566663 345444 33 3569999999999888765443
No 369
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.33 E-value=0.00044 Score=56.34 Aligned_cols=145 Identities=14% Similarity=0.106 Sum_probs=79.9
Q ss_pred EEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEecc
Q 013827 258 ILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH 337 (436)
Q Consensus 258 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 337 (436)
.+...+.||.|+-++++..+........ +....-.+....-+++|+.+|.|.+|...... .........
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~---~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g--------~~~d~~~s~ 100 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERF---IDEGQRVVTASAKLMVGTSDGAVYVFNWNLEG--------AHSDRVCSG 100 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhh---hhcceeecccCceEEeecccceEEEecCCccc--------hHHHhhhcc
Confidence 4555677888888877654332211111 11111112223569999999999999876321 111111112
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCC-CcEEEEEEcCCCCcEEEEE--eCCCcEEEEeCC
Q 013827 338 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA-GAVFSVAFSEDSPFVLAIG--GSKGKLEIWDTL 414 (436)
Q Consensus 338 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~--~~dg~i~iwd~~ 414 (436)
...|.++.-.-+...+..+++.||.|+.|++.-.+. +-....|. .++..+..+..++ +++.+ +.|..++.|++.
T Consensus 101 ~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~--~g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 101 EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV--LGYVGQHNFESGEELIVVGSDE-FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cccceeccccccccceeEEeccCCceeeeccccCce--eeeeccccCCCcceeEEecCCc-eEEeeccccchhhhhcchh
Confidence 223333322222225889999999999999987763 33334444 3444444455555 35555 667777777775
Q ss_pred CC
Q 013827 415 SD 416 (436)
Q Consensus 415 ~~ 416 (436)
.-
T Consensus 178 ~~ 179 (238)
T KOG2444|consen 178 KI 179 (238)
T ss_pred hh
Confidence 43
No 370
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.27 E-value=0.0058 Score=56.34 Aligned_cols=158 Identities=18% Similarity=0.148 Sum_probs=85.7
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCC
Q 013827 245 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD 324 (436)
Q Consensus 245 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~ 324 (436)
.|+.+.|.++. .-|+++...|.|.+|.....+... .....+-....+.+- ...++.-.+-|+.......-
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~l~di~~r~~~~~ 72 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF-------SLNNSPGKLTDISDRAPPSL 72 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE--------------------S---------GGGSS-SEEE-GGG--TT-
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc-------cccCCCcceEEehhhCCccc
Confidence 57899999987 679999999999999876543221 000000111111110 01112223344443221111
Q ss_pred CCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCC------CCCcEEEEEEcC-----
Q 013827 325 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP------KAGAVFSVAFSE----- 393 (436)
Q Consensus 325 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~----- 393 (436)
.....+..-++...++|++++.+.-| ++|+|..+|.+.|.|+|....+....... ....++++.|.-
T Consensus 73 ~~gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~ 150 (395)
T PF08596_consen 73 KEGFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG 150 (395)
T ss_dssp SEEEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT
T ss_pred ccccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC
Confidence 11234555666678999999998654 99999999999999998876444433333 234678888762
Q ss_pred CC--CcEEEEEeCCCcEEEEeCC
Q 013827 394 DS--PFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 394 ~~--~~~l~s~~~dg~i~iwd~~ 414 (436)
|+ .-++.+|...|.+.+|.+.
T Consensus 151 D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 151 DGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp SSSEEEEEEEEETTSEEEEEEEE
T ss_pred CcccceEEEEEeCCCCEEEEEEe
Confidence 22 1257778999999999885
No 371
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.27 E-value=0.0008 Score=38.30 Aligned_cols=38 Identities=34% Similarity=0.575 Sum_probs=32.9
Q ss_pred cccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 013827 329 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 367 (436)
Q Consensus 329 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd 367 (436)
.+...+..|...+.++.|++.+ .++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 3456667788999999999988 8999999999999996
No 372
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.18 E-value=0.0011 Score=54.15 Aligned_cols=107 Identities=12% Similarity=0.091 Sum_probs=69.2
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 221 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 221 (436)
-+.-+++|+.+|.|.+|+.......... ...-...|-++--.-+...+..+++.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~--------------------------~~s~~e~i~~~Ip~~~~~~~~c~~~~ 122 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDR--------------------------VCSGEESIDLGIPNGRDSSLGCVGAQ 122 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHh--------------------------hhcccccceeccccccccceeEEecc
Confidence 3667999999999999998722111100 00112233333222222348899999
Q ss_pred CCcEEEEeCCCCeEEEEEcccC-CCeEEEEEcCCCCCEEEEE--ECCCcEEEEecCC
Q 013827 222 DKQVKIWDVAAGKCNLTLEHHT-DKVQAVAWNHHSPQILLSG--SFDRSVVMKDARI 275 (436)
Q Consensus 222 dg~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~--~~d~~i~~wd~~~ 275 (436)
||.|+.|++.-++.+.....|+ .++.....+..+ .+++.+ |.|..++.|++..
T Consensus 123 dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 123 DGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCceeeeccccCceeeeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhh
Confidence 9999999999888888777777 555555555555 566666 6777777777754
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.18 E-value=0.12 Score=44.06 Aligned_cols=240 Identities=11% Similarity=0.042 Sum_probs=121.7
Q ss_pred cccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCC---
Q 013827 76 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME--- 152 (436)
Q Consensus 76 v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d--- 152 (436)
-..|+|+|..+.-++-....+. ...+++.....++.+.... .....+ -.-.|||||.+|...-.|
T Consensus 70 ~Hgi~~~p~~~ravafARrPGt---f~~vfD~~~~~~pv~~~s~-~~RHfy--------GHGvfs~dG~~LYATEndfd~ 137 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGT---FAMVFDPNGAQEPVTLVSQ-EGRHFY--------GHGVFSPDGRLLYATENDFDP 137 (366)
T ss_pred cCCeecCCCCcceEEEEecCCc---eEEEECCCCCcCcEEEecc-cCceee--------cccccCCCCcEEEeecCCCCC
Confidence 3568999987765554333222 3445555544333222111 111111 011249999999876544
Q ss_pred --CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC---------
Q 013827 153 --PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--------- 221 (436)
Q Consensus 153 --g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--------- 221 (436)
|.|-|||.... ...+-.+..|.-.-..+.|.+||+ .++.+..
T Consensus 138 ~rGViGvYd~r~~--------------------------fqrvgE~~t~GiGpHev~lm~DGr-tlvvanGGIethpdfg 190 (366)
T COG3490 138 NRGVIGVYDAREG--------------------------FQRVGEFSTHGIGPHEVTLMADGR-TLVVANGGIETHPDFG 190 (366)
T ss_pred CCceEEEEecccc--------------------------cceecccccCCcCcceeEEecCCc-EEEEeCCceecccccC
Confidence 78999998621 112222446766777889999986 4444321
Q ss_pred ---------CCcEEEEeCCCCeEEEEE--c--ccCCCeEEEEEcCCCCCEEEEEECCCcEE----EEec-CCCCCccc--
Q 013827 222 ---------DKQVKIWDVAAGKCNLTL--E--HHTDKVQAVAWNHHSPQILLSGSFDRSVV----MKDA-RISTHSGF-- 281 (436)
Q Consensus 222 ---------dg~v~vwd~~~~~~~~~~--~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~----~wd~-~~~~~~~~-- 281 (436)
.-++.+.|..+++.+... . .+...|.-++..++| ..++.+-..|.-. +.-. +.++....
T Consensus 191 R~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg-tvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~ 269 (366)
T COG3490 191 RTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG-TVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLD 269 (366)
T ss_pred ccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCC-cEEEEEEeeCCCccCCcceeeccCCCcCcccC
Confidence 112334443444433222 1 244567777777777 5554443332110 0000 11111110
Q ss_pred -----eEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEE
Q 013827 282 -----KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT 356 (436)
Q Consensus 282 -----~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 356 (436)
.......+-+++.+.+.+...+++-..+..-+||..++.. + ....-.....++-. . .-+++
T Consensus 270 ~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v---------v--~~a~l~daaGva~~--~-~gf~v 335 (366)
T COG3490 270 LPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV---------V--SEAALPDAAGVAAA--K-GGFAV 335 (366)
T ss_pred CCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcE---------E--ecccccccccceec--c-CceEE
Confidence 0112344677888776655556666667788999998832 1 11111122333333 2 34566
Q ss_pred EeCCCcEEEEECC
Q 013827 357 GSTDKMVKLWDLS 369 (436)
Q Consensus 357 ~~~d~~i~iwd~~ 369 (436)
.+.+|.+.++.-.
T Consensus 336 ssg~G~~~~~s~~ 348 (366)
T COG3490 336 SSGQGRIIFYSRA 348 (366)
T ss_pred ecCCceEEecccc
Confidence 6778888877443
No 374
>PHA02713 hypothetical protein; Provisional
Probab=97.15 E-value=0.011 Score=57.62 Aligned_cols=186 Identities=6% Similarity=0.028 Sum_probs=94.1
Q ss_pred cEEEEEeCC------CcEEEEeCCCCeEEEE--EcccCCCeEEEEEcCCCCCEEEEEECCC-----cEEEEecCCCCCcc
Q 013827 214 NILASASAD------KQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARISTHSG 280 (436)
Q Consensus 214 ~~l~s~~~d------g~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~ 280 (436)
.+.+.|+.+ ..+..||+.+...... +....... +++. -++ .+.+.|+.++ .+..||..+..=..
T Consensus 305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~-~~g-~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 305 EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV-IDD-TIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE-ECC-EEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 577777753 3477888877653211 11111111 1222 234 6778888764 47788877542111
Q ss_pred --ceEeeeCCeeEEEeCCCCCcEEEEEeCCC-----------------------cEEEEeCCCCCCCCCCCCCcccEEEe
Q 013827 281 --FKWAVAADVESLAWDPHAEHSFVVSLEDG-----------------------TIKGFDIRTAKSDPDSTSQQSSFTLH 335 (436)
Q Consensus 281 --~~~~~~~~i~~~~~~~~~~~~~~~~~~dg-----------------------~i~i~d~~~~~~~~~~~~~~~~~~~~ 335 (436)
...........+.. ++.+++.|+.++ .+..||..+.+ +..+..+.
T Consensus 382 ~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-------W~~v~~m~ 451 (557)
T PHA02713 382 LPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-------WETLPNFW 451 (557)
T ss_pred CCCCCcccccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe-------EeecCCCC
Confidence 00011111122222 236777776542 46677776641 22222221
Q ss_pred ccCCCeEEEEecCCCCCEEEEEeCC------CcEEEEECCC-CCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCC--
Q 013827 336 AHDKAVCTISYNPLVPNLLATGSTD------KMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-- 406 (436)
Q Consensus 336 ~~~~~v~~~~~~p~~~~~l~~~~~d------~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-- 406 (436)
........+.+. + .+.+.|+.+ ..+..||..+ .+...+...+........+.+ ++. ++++||.+|
T Consensus 452 ~~r~~~~~~~~~--~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~-iyv~Gg~~~~~ 525 (557)
T PHA02713 452 TGTIRPGVVSHK--D-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNT-IMMLHCYESYM 525 (557)
T ss_pred cccccCcEEEEC--C-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCE-EEEEeeeccee
Confidence 111111122222 3 566667654 2467899988 665544444433333333333 454 789999888
Q ss_pred cEEEEeCCCCcc
Q 013827 407 KLEIWDTLSDAG 418 (436)
Q Consensus 407 ~i~iwd~~~~~~ 418 (436)
.+..||..+.+=
T Consensus 526 ~~e~yd~~~~~W 537 (557)
T PHA02713 526 LQDTFNVYTYEW 537 (557)
T ss_pred ehhhcCcccccc
Confidence 778888877654
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.011 Score=54.36 Aligned_cols=140 Identities=17% Similarity=0.197 Sum_probs=97.1
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCC------CEEEEEECCCcEEEEecCCCCCccc------e
Q 013827 215 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP------QILLSGSFDRSVVMKDARISTHSGF------K 282 (436)
Q Consensus 215 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~s~~~d~~i~~wd~~~~~~~~~------~ 282 (436)
+|.++.....++-.|++.|+.+...+.+.. |.-+.+.|+.. ..-+.|-.+..|.-||+|....-.. .
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 455666667889999999999999987665 77777777641 1124577789999999986544211 1
Q ss_pred EeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCc
Q 013827 283 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM 362 (436)
Q Consensus 283 ~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~ 362 (436)
+.......|++-..+| ++++|+.+|.|++||-... .....+.+-..+|..+..+.+| .+|++.+ +..
T Consensus 427 y~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~---------~AKTAlPgLG~~I~hVdvtadG-Kwil~Tc-~ty 493 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGR---------RAKTALPGLGDAIKHVDVTADG-KWILATC-KTY 493 (644)
T ss_pred cccccccceeeecCCc--eEEEeecCCcEEeehhhhh---------hhhhcccccCCceeeEEeeccC-cEEEEec-ccE
Confidence 1223445566655544 7999999999999997332 3345667788899999999999 5554433 556
Q ss_pred EEEEEC
Q 013827 363 VKLWDL 368 (436)
Q Consensus 363 i~iwd~ 368 (436)
+.+.++
T Consensus 494 LlLi~t 499 (644)
T KOG2395|consen 494 LLLIDT 499 (644)
T ss_pred EEEEEE
Confidence 666665
No 376
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.09 E-value=0.077 Score=51.89 Aligned_cols=190 Identities=12% Similarity=0.175 Sum_probs=99.6
Q ss_pred cceeEEEecCCCCcEEEEEe-----CCC--cEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECC--------
Q 013827 201 DSVLGLAWNKEFRNILASAS-----ADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-------- 265 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~-----~dg--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-------- 265 (436)
..+...+++|+|....++.. .|. .|.+++.. +.......+ ...+.-.|+|+| ..+.+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG-~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDA-DAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCC-CceEEEecCcceEEEec
Confidence 46788899999865444442 243 45555542 222222232 237788999998 444444322
Q ss_pred ----CcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEE---eCCCCCCCCCCCCCcccEEEe-cc
Q 013827 266 ----RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF---DIRTAKSDPDSTSQQSSFTLH-AH 337 (436)
Q Consensus 266 ----~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~---d~~~~~~~~~~~~~~~~~~~~-~~ 337 (436)
+.+.+.++..+.... .....|..+.|+|+|..++++. ++.|.+- ....+. .. ... ...+. .-
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~--~~--l~~-~~~l~~~l 495 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ--YA--LTN-PREVGPGL 495 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc--ee--ecc-cEEeeccc
Confidence 233333443332221 3456799999999997655555 4677663 322221 00 001 11222 22
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEEE--ECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEE
Q 013827 338 DKAVCTISYNPLVPNLLATGSTDKMVKLW--DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI 410 (436)
Q Consensus 338 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iw--d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 410 (436)
...+..+.|.+++ .+ +++..++...+| ++..... ..........++.+++-++. . ++ ....+|.+.+
T Consensus 496 ~~~~~~l~W~~~~-~L-~V~~~~~~~~v~~v~vDG~~~-~~~~~~n~~~~v~~vaa~~~-~-iy-v~~~~g~~~l 564 (591)
T PRK13616 496 GDTAVSLDWRTGD-SL-VVGRSDPEHPVWYVNLDGSNS-DALPSRNLSAPVVAVAASPS-T-VY-VTDARAVLQL 564 (591)
T ss_pred CCccccceEecCC-EE-EEEecCCCCceEEEecCCccc-cccCCCCccCceEEEecCCc-e-EE-EEcCCceEEe
Confidence 3346889999987 54 455554444444 4443321 11111123557788887763 3 34 4566664433
No 377
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.06 E-value=0.24 Score=45.33 Aligned_cols=238 Identities=12% Similarity=0.031 Sum_probs=99.6
Q ss_pred CCCcEEEEee-CCCcEEEEeCCCCCCCccee-eecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 141 EKGNFMAVGS-MEPAIEIWDLDVIDEVQPHV-ILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 141 ~~~~~l~~g~-~dg~i~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
.+.++|+..+ .++.|+|.|+.+.-....+. ++.. ..+....+- ..-..+.--|+| .+++|
T Consensus 85 ~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~----------------~ev~~k~g~-s~PHT~Hclp~G-~imIS 146 (461)
T PF05694_consen 85 KERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEP----------------EEVFEKTGL-SRPHTVHCLPDG-RIMIS 146 (461)
T ss_dssp --S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-H----------------HHHHHHH-E-EEEEEEEE-SS---EEEE
T ss_pred ccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCH----------------HHHHhhcCC-CCCceeeecCCc-cEEEE
Confidence 4567777776 67899999997533222110 0000 000000011 111222334665 36766
Q ss_pred E--eC----CCcEEEEeCCCCeEEEEEccc---CCCeEEEEEcCCCCCEEEEEEC--------------------CCcEE
Q 013827 219 A--SA----DKQVKIWDVAAGKCNLTLEHH---TDKVQAVAWNHHSPQILLSGSF--------------------DRSVV 269 (436)
Q Consensus 219 ~--~~----dg~v~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~~~--------------------d~~i~ 269 (436)
+ .. -|-+.+.|-++.+........ ...-..+-|.|.. +.++|... ..++.
T Consensus 147 ~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~ 225 (461)
T PF05694_consen 147 ALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLH 225 (461)
T ss_dssp EEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHHHH-S--EEE
T ss_pred eccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhhcccccCeEE
Confidence 5 22 246888888777766666432 2344677888877 77777653 46899
Q ss_pred EEecCCCCCccceEeee--CCeeEEEeC--CCCCcEEEEEeCCCcEEEEeC-CCCCCCCCCCCCcccEEEe---------
Q 013827 270 MKDARISTHSGFKWAVA--ADVESLAWD--PHAEHSFVVSLEDGTIKGFDI-RTAKSDPDSTSQQSSFTLH--------- 335 (436)
Q Consensus 270 ~wd~~~~~~~~~~~~~~--~~i~~~~~~--~~~~~~~~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~--------- 335 (436)
+||+.+.+..+.+.--. .-+..+.|. |....-++.+.-..+|..|-- ..+.= ..+.+..+.
T Consensus 226 vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W-----~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 226 VWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEW-----AAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp EEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEE-----EEEEEEEE--EE--SS--
T ss_pred EEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCe-----eeeEEEECCCcccCcccc
Confidence 99999888766333211 234456554 444333444444444444432 22210 001111111
Q ss_pred --------ccCCCeEEEEecCCCCCEEEEEeC-CCcEEEEECCCCCc-eeEEeeC--C--------------CCCcEEEE
Q 013827 336 --------AHDKAVCTISYNPLVPNLLATGST-DKMVKLWDLSNNQP-SCIASRN--P--------------KAGAVFSV 389 (436)
Q Consensus 336 --------~~~~~v~~~~~~p~~~~~l~~~~~-d~~i~iwd~~~~~~-~~~~~~~--~--------------~~~~v~~~ 389 (436)
.-..-|+.|..|.|. ++|..... .|.|+.||+..... ..+.... + -.+...-+
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDD-rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMv 379 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDD-RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMV 379 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS--EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----E
T ss_pred cccccccccCCCceEeEEEccCC-CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeE
Confidence 113457899999998 77776665 89999999987542 2222111 1 11234668
Q ss_pred EEcCCCCcEEEEEe
Q 013827 390 AFSEDSPFVLAIGG 403 (436)
Q Consensus 390 ~~~~~~~~~l~s~~ 403 (436)
..|.||+.+.+|.|
T Consensus 380 qlS~DGkRlYvTnS 393 (461)
T PF05694_consen 380 QLSLDGKRLYVTNS 393 (461)
T ss_dssp EE-TTSSEEEEE--
T ss_pred EEccCCeEEEEEee
Confidence 89999997666655
No 378
>PHA02713 hypothetical protein; Provisional
Probab=97.02 E-value=0.094 Score=51.27 Aligned_cols=146 Identities=11% Similarity=0.101 Sum_probs=76.1
Q ss_pred cEEEEEeCCC-----cEEEEeCCCCeEEE--EEcccCCCeEEEEEcCCCCCEEEEEECCC--------------------
Q 013827 214 NILASASADK-----QVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDR-------------------- 266 (436)
Q Consensus 214 ~~l~s~~~dg-----~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-------------------- 266 (436)
.+.+.|+.++ ++..||..+.+-.. .+.........+.. ++ .+.+.|+.++
T Consensus 353 ~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 353 TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CC-EEEEEeCCCccccccccccccccccccccc
Confidence 5777777654 48889988765322 11111111112222 34 6777777653
Q ss_pred ---cEEEEecCCCCCc--cceEeeeCCeeEEEeCCCCCcEEEEEeCC------CcEEEEeCCC-CCCCCCCCCCcccEEE
Q 013827 267 ---SVVMKDARISTHS--GFKWAVAADVESLAWDPHAEHSFVVSLED------GTIKGFDIRT-AKSDPDSTSQQSSFTL 334 (436)
Q Consensus 267 ---~i~~wd~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~d------g~i~i~d~~~-~~~~~~~~~~~~~~~~ 334 (436)
.+..||..+..=. ............+.+. + .+++.|+.+ ..+..||..+ .+ +..+..+
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~--~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-------W~~~~~m 499 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHK--D-DIYVVCDIKDEKNVKTCIFRYNTNTYNG-------WELITTT 499 (557)
T ss_pred ccceEEEECCCCCeEeecCCCCcccccCcEEEEC--C-EEEEEeCCCCCCccceeEEEecCCCCCC-------eeEcccc
Confidence 4667777654311 1010111111122222 3 567777654 2467788876 31 3333334
Q ss_pred eccCCCeEEEEecCCCCCEEEEEeCCC--cEEEEECCCCCcee
Q 013827 335 HAHDKAVCTISYNPLVPNLLATGSTDK--MVKLWDLSNNQPSC 375 (436)
Q Consensus 335 ~~~~~~v~~~~~~p~~~~~l~~~~~d~--~i~iwd~~~~~~~~ 375 (436)
.........+.+. + .+.++|+.++ .+..||..+.++..
T Consensus 500 ~~~r~~~~~~~~~--~-~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 500 ESRLSALHTILHD--N-TIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred CcccccceeEEEC--C-EEEEEeeecceeehhhcCcccccccc
Confidence 3333333333332 3 7888999888 78888888877543
No 379
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.22 Score=44.35 Aligned_cols=198 Identities=11% Similarity=0.090 Sum_probs=110.0
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEe-
Q 013827 206 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA- 284 (436)
Q Consensus 206 ~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~- 284 (436)
-.|.++...++.+--..+.|.-|+..+++. ..+. +.+.+.++..-..+ ..|+++. .-+.+++..+.........
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~-g~Lv~~~--~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAG-GRLIACE--HGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCC-CeEEEEc--cccEEEeccCCceeEEeccc
Confidence 357777655666767778899999886653 3333 23334444444443 3444443 2345566544443211111
Q ss_pred ----eeCCeeEEEeCCCCCcEEEEEeCC------------CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecC
Q 013827 285 ----VAADVESLAWDPHAEHSFVVSLED------------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP 348 (436)
Q Consensus 285 ----~~~~i~~~~~~~~~~~~~~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 348 (436)
.....+.+...|+|. +.+ ++.. |.|+-+|. .+ .....+..+-..-+.++|+|
T Consensus 105 ~~~~~~~r~ND~~v~pdG~-~wf-gt~~~~~~~~~~~~~~G~lyr~~p-~g---------~~~~l~~~~~~~~NGla~Sp 172 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGR-IWF-GDMGYFDLGKSEERPTGSLYRVDP-DG---------GVVRLLDDDLTIPNGLAFSP 172 (307)
T ss_pred cCCCCcCCCCceeEcCCCC-EEE-eCCCccccCccccCCcceEEEEcC-CC---------CEEEeecCcEEecCceEECC
Confidence 124567788888874 333 3222 22333332 12 22333444455568899999
Q ss_pred CCCCEEEEEeCCCcEEEEECCC--C---CceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCC-cEEEEeCCCCcccccc
Q 013827 349 LVPNLLATGSTDKMVKLWDLSN--N---QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-KLEIWDTLSDAGISNR 422 (436)
Q Consensus 349 ~~~~~l~~~~~d~~i~iwd~~~--~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~ 422 (436)
++..++++=+..+.|.-|++.. . ............+..-.++...+|. +.+++..+| .|.+|+.. ++.+...
T Consensus 173 Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G~l~~~i 250 (307)
T COG3386 173 DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-GKLLGEI 250 (307)
T ss_pred CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-CcEEEEE
Confidence 9944444445568888887752 1 1111223333456677888888998 354444444 89999988 7766543
No 380
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.00 E-value=0.25 Score=44.71 Aligned_cols=240 Identities=12% Similarity=0.078 Sum_probs=118.6
Q ss_pred CCCCCCCCCcEEEEeeC-CC--cEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCc-ccceeEEEecC
Q 013827 135 CPLKDREKGNFMAVGSM-EP--AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH-TDSVLGLAWNK 210 (436)
Q Consensus 135 ~~~~~s~~~~~l~~g~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~ 210 (436)
+...|.+||+.|+.++. || .+.+.|+.+++..+ +... ........++|
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----------------------------LTdg~g~~~~g~~~s~ 90 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----------------------------LTDGPGDNTFGGFLSP 90 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------------------------------SS-B-TTT-EE-T
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----------------------------CccCCCCCccceEEec
Confidence 34455889977766654 44 56666777654433 1111 12233566778
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEc--CCCCCEEEEEEC----------------------CC
Q 013827 211 EFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN--HHSPQILLSGSF----------------------DR 266 (436)
Q Consensus 211 ~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~s~~~----------------------d~ 266 (436)
+++ .++-......|+-.|+++.+....+......+-...|. .++ ..++-.-. ..
T Consensus 91 ~~~-~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~-t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~ 168 (386)
T PF14583_consen 91 DDR-ALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDC-TKLVGIEISREDWKPLTKWKGFREFYEARPHC 168 (386)
T ss_dssp TSS-EEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTS-SEEEEEEEEGGG-----SHHHHHHHHHC---E
T ss_pred CCC-eEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCc-cEEEEEEEeehhccCccccHHHHHHHhhCCCc
Confidence 864 55444455689999999987665565555556556664 333 44332211 12
Q ss_pred cEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeC---CCc-EEEEeCCCCCCCCCCCCCcccEEEecc--CCC
Q 013827 267 SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE---DGT-IKGFDIRTAKSDPDSTSQQSSFTLHAH--DKA 340 (436)
Q Consensus 267 ~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~ 340 (436)
.|.-.|+.+++. .........+..+.|+|..+.+++-|.+ +.. -|||-+++.. .....+..+ ...
T Consensus 169 ~i~~idl~tG~~-~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg--------~~~~~v~~~~~~e~ 239 (386)
T PF14583_consen 169 RIFTIDLKTGER-KVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG--------SNVKKVHRRMEGES 239 (386)
T ss_dssp EEEEEETTT--E-EEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----------EESS---TTEE
T ss_pred eEEEEECCCCce-eEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC--------CcceeeecCCCCcc
Confidence 344456665443 3355567778999999988887777654 222 3677666542 112222222 233
Q ss_pred eEEEEecCCCCCEEEEEe----CCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCC----------
Q 013827 341 VCTISYNPLVPNLLATGS----TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG---------- 406 (436)
Q Consensus 341 v~~~~~~p~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---------- 406 (436)
+..=-|.|+|..+...+. .+..|.-+|..+.+...+...+ ....+.-++||. +++.=+.|.
T Consensus 240 ~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p----~~~H~~ss~Dg~-L~vGDG~d~p~~v~~~~~~ 314 (386)
T PF14583_consen 240 VGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP----WCSHFMSSPDGK-LFVGDGGDAPVDVADAGGY 314 (386)
T ss_dssp EEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-----SEEEEEE-TTSS-EEEEEE-------------
T ss_pred cccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC----ceeeeEEcCCCC-EEEecCCCCCccccccccc
Confidence 455578999965555443 2335677788887643333332 355677789998 455433332
Q ss_pred ------cEEEEeCCCCcc
Q 013827 407 ------KLEIWDTLSDAG 418 (436)
Q Consensus 407 ------~i~iwd~~~~~~ 418 (436)
-|+++++..+..
T Consensus 315 ~~~~~p~i~~~~~~~~~~ 332 (386)
T PF14583_consen 315 KIENDPWIYLFDVEAGRF 332 (386)
T ss_dssp ------EEEEEETTTTEE
T ss_pred eecCCcEEEEeccccCce
Confidence 466778876554
No 381
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.011 Score=58.92 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=73.0
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCC
Q 013827 143 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 222 (436)
Q Consensus 143 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 222 (436)
+..+|.|+..|.|...|+...-.. ...-..-..+|++++|+.+| ..++.|-.+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~--------------------------~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~ 151 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGP--------------------------LHQNERVQGPVTSVAFNQDG-SLLLAGLGD 151 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccch--------------------------hhcCCccCCcceeeEecCCC-ceeccccCC
Confidence 556888998899988887642110 00011246789999999997 589999999
Q ss_pred CcEEEEeCCCCeEEEEEcccCCCeEEEE---EcCCCCCEEEEEECCCcEEEEec
Q 013827 223 KQVKIWDVAAGKCNLTLEHHTDKVQAVA---WNHHSPQILLSGSFDRSVVMKDA 273 (436)
Q Consensus 223 g~v~vwd~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~l~s~~~d~~i~~wd~ 273 (436)
|.|.+||+..++..+.+..|..+.+.+- +..++ ..++++...|. +|.+
T Consensus 152 G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~n-S~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 152 GHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQN-SKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CcEEEEEccCCcceeeeeecCCccceEEEEEEeCCC-cEEEEccCCCc--eEEE
Confidence 9999999999999988877776666554 34444 56777777776 5554
No 382
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.96 E-value=0.51 Score=47.39 Aligned_cols=315 Identities=12% Similarity=0.142 Sum_probs=159.4
Q ss_pred ceeccCCCCCCcccCCCCCCccccccceeccCC------ceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcC
Q 013827 53 DLYYASNQMDPYLKDKDDEDSEDLEDMTINPND------AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAF 126 (436)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~------~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 126 (436)
..+|..-++.......+.+-+.+|.|+.++|-| +++++|..++. .+.+.-.... .+..+.....+.+
T Consensus 510 ~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~----~~~l~~~pd~---~~~~~~~l~~~~i 582 (1096)
T KOG1897|consen 510 ALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDI----SMILTFLPDL---ILITHEQLSGEII 582 (1096)
T ss_pred EEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecce----EEEEEECCCc---ceeeeeccCCCcc
Confidence 344444443333333445567789999999863 26777776652 2222222222 3444444555555
Q ss_pred cceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEE
Q 013827 127 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 206 (436)
Q Consensus 127 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 206 (436)
|-.+-... +-.|..+|.++..||.+.-+.++........ +....+ -..++.--
T Consensus 583 PRSIl~~~----~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd---------------------~Kk~~l--Gt~P~~Lr 635 (1096)
T KOG1897|consen 583 PRSILLTT----FEGDIHYLLVALGDGALLYFVLDINTGQLSD---------------------RKKVTL--GTQPISLR 635 (1096)
T ss_pred chheeeEE----eeccceEEEEEcCCceEEEEEEEcccceEcc---------------------cccccc--CCCCcEEE
Confidence 54443321 1446889999999999987766543322210 000001 23455555
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeE-EEEEcC-CCCCEEEEEECCCcEEEEecCCCCCc-cceE
Q 013827 207 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ-AVAWNH-HSPQILLSGSFDRSVVMKDARISTHS-GFKW 283 (436)
Q Consensus 207 ~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~-~~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~ 283 (436)
.|+..+++.+++++ |.-..+|.-...-+...+.- ..+. -..|+. ..+..++++. .+.+.+.-+..-... ....
T Consensus 636 ~f~sk~~t~vfa~s-drP~viY~~n~kLv~spls~--kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtv 711 (1096)
T KOG1897|consen 636 TFSSKSRTAVFALS-DRPTVIYSSNGKLVYSPLSL--KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTV 711 (1096)
T ss_pred EEeeCCceEEEEeC-CCCEEEEecCCcEEEeccch--HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeee
Confidence 66666555565554 45555665332222111110 0111 112222 2223455544 455666555432222 1124
Q ss_pred eeeCCeeEEEeCCCCCcEEEEEeCC--------------CcEEEEeCCCCCCCCCCCCCcccEEEeccC-------CCeE
Q 013827 284 AVAADVESLAWDPHAEHSFVVSLED--------------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-------KAVC 342 (436)
Q Consensus 284 ~~~~~i~~~~~~~~~~~~~~~~~~d--------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-------~~v~ 342 (436)
.....+..+++.+.. ..+++.+.- ..++++|-.+. ..+..|. -.+.
T Consensus 712 pl~~~prrI~~q~~s-l~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf------------~vl~~hef~~~E~~~Si~ 778 (1096)
T KOG1897|consen 712 PLGESPRRICYQESS-LTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTF------------EVLSSHEFERNETALSII 778 (1096)
T ss_pred cCCCChhheEecccc-eEEEEEecccccchhhcCCcceEEEEEEecCCce------------eEEeeccccccceeeeee
Confidence 445666777777632 334333221 12555555443 2233332 2355
Q ss_pred EEEecCCCCCEEEEEeC----------CCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 013827 343 TISYNPLVPNLLATGST----------DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 343 ~~~~~p~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 412 (436)
+..|..+.+.++++|.. .|+|.+|.+...+.........-.+.+.++.-- +|+ ++| +-...|++|+
T Consensus 779 s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngk-llA--~In~~vrLye 854 (1096)
T KOG1897|consen 779 SCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGK-LLA--GINQSVRLYE 854 (1096)
T ss_pred eeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCe-EEE--ecCcEEEEEE
Confidence 56688775477877763 477888888773322222222234566665543 454 354 4567899999
Q ss_pred CCCCcccccc
Q 013827 413 TLSDAGISNR 422 (436)
Q Consensus 413 ~~~~~~~~~~ 422 (436)
..+++.++..
T Consensus 855 ~t~~~eLr~e 864 (1096)
T KOG1897|consen 855 WTTERELRIE 864 (1096)
T ss_pred ccccceehhh
Confidence 9988666543
No 383
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.93 E-value=0.16 Score=48.89 Aligned_cols=192 Identities=15% Similarity=0.183 Sum_probs=107.8
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcccCC------CeE--EEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeee
Q 013827 215 ILASASADKQVKIWDVAAGKCNLTLEHHTD------KVQ--AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA 286 (436)
Q Consensus 215 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 286 (436)
.++.++.++.|.-.|..+++.+..+..... .+. .+... ++ ..++.++.++.|.-+|.++++..-......
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~-~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DP-RKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cC-CeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 577788889999999999988776643221 010 11111 21 467778889999999999887653222111
Q ss_pred CC-----e-eEEEeCCCCCcEEEEEe---------CCCcEEEEeCCCCCCCCCCCCCcccEEEeccC-------------
Q 013827 287 AD-----V-ESLAWDPHAEHSFVVSL---------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD------------- 338 (436)
Q Consensus 287 ~~-----i-~~~~~~~~~~~~~~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~------------- 338 (436)
.. + ....+. + .++++++ .++.+..+|..+++. +.......
T Consensus 141 ~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~---------~W~~~~~~~~~~~~~~~~~~~ 208 (488)
T cd00216 141 QVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKL---------LWRFYTTEPDPNAFPTWGPDR 208 (488)
T ss_pred CcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCce---------eeEeeccCCCcCCCCCCCCCc
Confidence 10 1 111111 1 2444443 367888999988742 22222110
Q ss_pred -------CCe-EEEEecCCCCCEEEEEeCCC------------------cEEEEECCCCCceeEEeeCCCCC----cEEE
Q 013827 339 -------KAV-CTISYNPLVPNLLATGSTDK------------------MVKLWDLSNNQPSCIASRNPKAG----AVFS 388 (436)
Q Consensus 339 -------~~v-~~~~~~p~~~~~l~~~~~d~------------------~i~iwd~~~~~~~~~~~~~~~~~----~v~~ 388 (436)
..+ ...++.+.+ ..++.++.++ .|.-+|..+++..-......+.. ....
T Consensus 209 ~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~ 287 (488)
T cd00216 209 QMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQ 287 (488)
T ss_pred ceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCC
Confidence 001 123444444 5777776554 68889999988433332222211 0000
Q ss_pred EEEc----CCCC--cEEEEEeCCCcEEEEeCCCCccccc
Q 013827 389 VAFS----EDSP--FVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 389 ~~~~----~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
..+. -++. .+++.++.+|.+...|..+++.+-+
T Consensus 288 p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 288 PSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred CeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 0111 1222 2467788899999999999998765
No 384
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.89 E-value=0.00018 Score=65.01 Aligned_cols=241 Identities=16% Similarity=0.145 Sum_probs=144.2
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
-+.+.-++.++.+..+..||-........ ..++....++|..+++..++.+
T Consensus 43 ~~e~~nlavaca~tiv~~YD~agq~~le~-----------------------------n~tg~aldm~wDkegdvlavlA 93 (615)
T KOG2247|consen 43 RPEGHNLAVACANTIVIYYDKAGQVILEL-----------------------------NPTGKALDMAWDKEGDVLAVLA 93 (615)
T ss_pred ecCCCceehhhhhhHHHhhhhhcceeccc-----------------------------CCchhHhhhhhccccchhhhhh
Confidence 45555588888888888888653222211 2455677888988888777888
Q ss_pred eCCCcEEEEeCCCCeEEEEEc-ccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCC
Q 013827 220 SADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA 298 (436)
Q Consensus 220 ~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~ 298 (436)
-..+.+.+||+.+... ..+. +-+..-.-+.|++.. ..++.+...|.+.+++..+.+.....-.|...++++++.+.+
T Consensus 94 ek~~piylwd~n~eyt-qqLE~gg~~s~sll~wsKg~-~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd 171 (615)
T KOG2247|consen 94 EKTGPIYLWDVNSEYT-QQLESGGTSSKSLLAWSKGT-PELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED 171 (615)
T ss_pred hcCCCeeechhhhhhH-HHHhccCcchHHHHhhccCC-ccccccccccceEEEeccchhhhhhhcccccceeEEEecccc
Confidence 8889999999976432 2221 111112227888887 678888899999999999988877666688999999999854
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeE--EE---EecCCCCCEEEEE-eCCCcEEEEECCCC-
Q 013827 299 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC--TI---SYNPLVPNLLATG-STDKMVKLWDLSNN- 371 (436)
Q Consensus 299 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~---~~~p~~~~~l~~~-~~d~~i~iwd~~~~- 371 (436)
+.+.++.|..+.+-...+.. .......+...... .+ .|...+ ..+.+. +....+..-.+...
T Consensus 172 --~vil~dcd~~L~v~~qeget--------a~ltevggepdnm~~~y~k~n~w~kag-e~m~sVvsgKkhl~yak~nE~D 240 (615)
T KOG2247|consen 172 --YVILCDCDNTLSVTTQEGET--------ASLTEVGGEPDNMDFFYGKVNGWGKAG-ETMVSVVSGKKHLMYAKYNELD 240 (615)
T ss_pred --eeeecCcHHHHHHhhhccce--------eeeeeccCccchhhhheeeeecccccc-ceeeeeeecHHHHHHHhhcCCC
Confidence 56777666655443322220 00111111111100 11 122223 222221 11111111111111
Q ss_pred CceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccC
Q 013827 372 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 425 (436)
Q Consensus 372 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (436)
++..+ .++...+-+.+..|--||. +.-+..-|.|..-.+.+++...+.|..
T Consensus 241 ~pval-~fq~~~gni~cyrwylDg~--i~igf~ag~iV~iS~h~aeLgaeffqk 291 (615)
T KOG2247|consen 241 EPVAL-QFQEKYGNIHCYRWYLDGY--ILIGFDAGYIVSISAHNAELGAEFFQK 291 (615)
T ss_pred Cccce-EeeecCCceeEEEEecccc--ccccccceeEEEEeccchHHHHHHHHH
Confidence 12233 5555667899999999997 444777788888888888877665543
No 385
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.88 E-value=0.27 Score=48.14 Aligned_cols=146 Identities=18% Similarity=0.156 Sum_probs=76.7
Q ss_pred cEEEEEeCCC-----cEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCC------cEEEEecCCCCCccc-
Q 013827 214 NILASASADK-----QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR------SVVMKDARISTHSGF- 281 (436)
Q Consensus 214 ~~l~s~~~dg-----~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~------~i~~wd~~~~~~~~~- 281 (436)
.+.|.|+.|| ++-.||..+.+....-. ............-++.+.++|+.++ ++..||..+..-...
T Consensus 382 ~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~ 460 (571)
T KOG4441|consen 382 KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA 460 (571)
T ss_pred EEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC
Confidence 5888898886 47778877654322211 1112222222222227778888554 466777776542211
Q ss_pred -eEeeeCCeeEEEeCCCCCcEEEEEeCCCc-----EEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEE
Q 013827 282 -KWAVAADVESLAWDPHAEHSFVVSLEDGT-----IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA 355 (436)
Q Consensus 282 -~~~~~~~i~~~~~~~~~~~~~~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 355 (436)
......... ++.. ++.++++|+.|+. |..||..+.+ +..+..+......+...... ..+.+
T Consensus 461 ~M~~~R~~~g-~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~-------W~~v~~m~~~rs~~g~~~~~---~~ly~ 527 (571)
T KOG4441|consen 461 PMNTRRSGFG-VAVL--NGKIYVVGGFDGTSALSSVERYDPETNQ-------WTMVAPMTSPRSAVGVVVLG---GKLYA 527 (571)
T ss_pred Ccccccccce-EEEE--CCEEEEECCccCCCccceEEEEcCCCCc-------eeEcccCccccccccEEEEC---CEEEE
Confidence 111111122 2222 2368888887763 6778887762 23332233333333333333 37778
Q ss_pred EEeCCC-----cEEEEECCCCCc
Q 013827 356 TGSTDK-----MVKLWDLSNNQP 373 (436)
Q Consensus 356 ~~~~d~-----~i~iwd~~~~~~ 373 (436)
+|+.|| +|..||..+.++
T Consensus 528 vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 528 VGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred EecccCccccceeEEcCCCCCce
Confidence 888776 466777776654
No 386
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.85 E-value=0.13 Score=44.21 Aligned_cols=175 Identities=10% Similarity=0.130 Sum_probs=100.1
Q ss_pred EcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccce-EeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 013827 239 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 317 (436)
Q Consensus 239 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~ 317 (436)
+.+-...+.++.|+|+. +.|++......-.++=...+..+... ...-.....+.+...+ +++++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEc
Confidence 34555669999999999 55665555555545433334433211 1112334556666543 455555668888888776
Q ss_pred CCCCCCCCCC-CcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc-eeEEeeCCC-------CCcEEE
Q 013827 318 TAKSDPDSTS-QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPK-------AGAVFS 388 (436)
Q Consensus 318 ~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~-------~~~v~~ 388 (436)
.......... ..++......+...-.++|.|.. +.|..+-+-.-+.||.+..... ........+ -..|.+
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 5522111000 01111122225667899999988 6777777767777776654321 111111111 124677
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 389 VAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 389 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
+.|++....+|+-+..++.+.-.|....
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCC
Confidence 8899877668888888888887776544
No 387
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.78 E-value=0.3 Score=42.06 Aligned_cols=208 Identities=17% Similarity=0.183 Sum_probs=121.7
Q ss_pred CcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcc-cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC
Q 013827 198 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS 276 (436)
Q Consensus 198 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 276 (436)
+-...+.++.|+|+.+ .|++......-.|+=-.+|+.+.++.- .-...-.+.+..++ .+.++--.++.+.++-+...
T Consensus 83 g~~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 83 GETANVSSLTYNPDTR-TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccceeeCCCcc-eEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEcCC
Confidence 4455699999999965 566666666666666677888887742 12234567788777 77777777888888776544
Q ss_pred CCccc----eE------eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCC-CCCCcccEEEeccCCCeEEEE
Q 013827 277 THSGF----KW------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD-STSQQSSFTLHAHDKAVCTIS 345 (436)
Q Consensus 277 ~~~~~----~~------~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~ 345 (436)
..... .. ..+.....++|+|.+. .++..-+-.-+.||.......... .....+.....-.-..+.++.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 22110 11 1145678999999874 566666666777777664321110 000000000001123477889
Q ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeC-CC---C---CcEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 013827 346 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN-PK---A---GAVFSVAFSEDSPFVLAIGGSKGKLEIW 411 (436)
Q Consensus 346 ~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~---~---~~v~~~~~~~~~~~~l~s~~~dg~i~iw 411 (436)
|++..+.+|+-+.+++.+.-.|....- .....+. +. . ...-.++..++|. +.+ .+.-+..+.|
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~~-~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYI-vSEPnlfy~F 309 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGEV-IELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYI-VSEPNLFYRF 309 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCCe-eeeEEeccCCCCCcccCCCcceeEECCCCC-EEE-EecCCcceec
Confidence 998776788888888888777776543 2222221 11 1 1234678888886 333 4454444443
No 388
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.66 E-value=0.008 Score=36.25 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=30.3
Q ss_pred CCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccc
Q 013827 383 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 419 (436)
Q Consensus 383 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (436)
...|..++|+|... ++|.+..+|.|.+|.+ +++.+
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcCc
Confidence 44699999999999 7999999999999999 65544
No 389
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.012 Score=58.74 Aligned_cols=103 Identities=17% Similarity=0.261 Sum_probs=71.8
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEee
Q 013827 300 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 379 (436)
Q Consensus 300 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 379 (436)
..++.|+..|.+...|.... ..+...-..-.++|++++|+.+| .+++.|-.+|.|.+||+..+++......
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n--------L~~~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~l~~i~e 170 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN--------LGPLHQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKILKVITE 170 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc--------cchhhcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcceeeeee
Confidence 46888999999999988764 11122223346889999999999 8999999999999999999875444444
Q ss_pred CCCC-CcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 380 NPKA-GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 380 ~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
.++. ..|..+.+..++. .+.++...|. +|.+.
T Consensus 171 ~~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 171 HGAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKLV 203 (1206)
T ss_pred cCCccceEEEEEEeCCCc-EEEEccCCCc--eEEEE
Confidence 3332 1233444555555 5777777776 56553
No 390
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.56 E-value=0.61 Score=42.85 Aligned_cols=99 Identities=13% Similarity=0.127 Sum_probs=53.8
Q ss_pred CCcEEEEeCCCCeEEEEEcccC--CCeEEEEEcCC--CCCEEEEEECCCcEEEEec-CCCCC-----cc-----------
Q 013827 222 DKQVKIWDVAAGKCNLTLEHHT--DKVQAVAWNHH--SPQILLSGSFDRSVVMKDA-RISTH-----SG----------- 280 (436)
Q Consensus 222 dg~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~--~~~~l~s~~~d~~i~~wd~-~~~~~-----~~----------- 280 (436)
..++.+||+.+.+.++++.--. ..+..+.|..+ ...-++.+...++|..|-- ..+.- +.
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 4689999999999999986432 23556777543 4233454445555555433 22110 00
Q ss_pred -----ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCC
Q 013827 281 -----FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 320 (436)
Q Consensus 281 -----~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 320 (436)
.+...+.-++.+..+.|+..+.+++-.+|.|+.||+....
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 0111234578999999998788888899999999998763
No 391
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.54 E-value=0.43 Score=40.86 Aligned_cols=147 Identities=10% Similarity=0.030 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCCEEEEEECCCc-EEEEecCCCCCccceEeeeCC--eeEEEeCCCCCcEEEEEe----CCCcEEEEeCCC
Q 013827 246 VQAVAWNHHSPQILLSGSFDRS-VVMKDARISTHSGFKWAVAAD--VESLAWDPHAEHSFVVSL----EDGTIKGFDIRT 318 (436)
Q Consensus 246 v~~~~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~----~dg~i~i~d~~~ 318 (436)
-..|.++|..+.-++.+-.-|+ ..++|......+.......+. --.-.|+|+|..+.++-. .-|.|-+||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 3457788877666666666665 467888877666544333222 123368999864444432 247899999996
Q ss_pred CCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeC-------CC-----------cEEEEECCCCCceeEEeeC
Q 013827 319 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-------DK-----------MVKLWDLSNNQPSCIASRN 380 (436)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-------d~-----------~i~iwd~~~~~~~~~~~~~ 380 (436)
. .+.+-++..|.-....+.+.+|| +.++.+.. -| ++.+.|..+++.+...++.
T Consensus 150 ~--------fqrvgE~~t~GiGpHev~lm~DG-rtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp 220 (366)
T COG3490 150 G--------FQRVGEFSTHGIGPHEVTLMADG-RTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP 220 (366)
T ss_pred c--------cceecccccCCcCcceeEEecCC-cEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCc
Confidence 5 45677888888888999999999 66665532 11 2334444444433333333
Q ss_pred --CCCCcEEEEEEcCCCCcEEEEE
Q 013827 381 --PKAGAVFSVAFSEDSPFVLAIG 402 (436)
Q Consensus 381 --~~~~~v~~~~~~~~~~~~l~s~ 402 (436)
.+.-.|..++..+||. +++.+
T Consensus 221 ~~l~~lSiRHld~g~dgt-vwfgc 243 (366)
T COG3490 221 ASLRQLSIRHLDIGRDGT-VWFGC 243 (366)
T ss_pred hhhhhcceeeeeeCCCCc-EEEEE
Confidence 3445688888888887 44433
No 392
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.46 E-value=0.56 Score=41.29 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=89.2
Q ss_pred cEEEEEeCCCcEEEEeCCC-CeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccc-----------
Q 013827 214 NILASASADKQVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF----------- 281 (436)
Q Consensus 214 ~~l~s~~~dg~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~----------- 281 (436)
+.|+.|+.+| +.++++.. .+.....+ ...|..+...++- +.+++-+ |+.+.++++........
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEeccc-CEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 5788899988 99999833 33333332 3349999999987 5555443 59999999876544331
Q ss_pred ---eEeeeCCeeEEE-eCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEE
Q 013827 282 ---KWAVAADVESLA-WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG 357 (436)
Q Consensus 282 ---~~~~~~~i~~~~-~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 357 (436)
.......+..++ -........++......|.+|.......... .....+. -...+..++|.+ ..++.|
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~----~~~ke~~-lp~~~~~i~~~~---~~i~v~ 154 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS----KLLKEIS-LPDPPSSIAFLG---NKICVG 154 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc----ceeEEEE-cCCCcEEEEEeC---CEEEEE
Confidence 112223344444 1122223444444555899998876411000 1233333 347788999994 667777
Q ss_pred eCCCcEEEEECCCCCceeEE
Q 013827 358 STDKMVKLWDLSNNQPSCIA 377 (436)
Q Consensus 358 ~~d~~i~iwd~~~~~~~~~~ 377 (436)
..+ ...+.|+.++....+.
T Consensus 155 ~~~-~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 155 TSK-GFYLIDLNTGSPSELL 173 (275)
T ss_pred eCC-ceEEEecCCCCceEEe
Confidence 655 4788899977654443
No 393
>PHA03098 kelch-like protein; Provisional
Probab=96.46 E-value=0.12 Score=50.50 Aligned_cols=185 Identities=15% Similarity=0.157 Sum_probs=88.2
Q ss_pred cEEEEEeCCC------cEEEEeCCCCeEEEEEcc---cCCCeEEEEEcCCCCCEEEEEECC-----CcEEEEecCCCCCc
Q 013827 214 NILASASADK------QVKIWDVAAGKCNLTLEH---HTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARISTHS 279 (436)
Q Consensus 214 ~~l~s~~~dg------~v~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~ 279 (436)
.+++.|+.++ .+..||..+.+... +.. .......+.+ ++ .+++.|+.+ ..+..||..+..-.
T Consensus 296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~~--~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTVF--NN-RIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred EEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEEE--CC-EEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 4666776543 57788887765432 211 1111222222 34 677778765 34667777654311
Q ss_pred cc-eEeeeCCeeEEEeCCCCCcEEEEEeCC------CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCC
Q 013827 280 GF-KWAVAADVESLAWDPHAEHSFVVSLED------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 352 (436)
Q Consensus 280 ~~-~~~~~~~i~~~~~~~~~~~~~~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 352 (436)
.. .......-.+++.. ++.+++.|+.+ ..+..||..+.. +.....+....... ++... ++ .
T Consensus 372 ~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~-------W~~~~~~p~~r~~~-~~~~~-~~-~ 439 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNK-------WSKGSPLPISHYGG-CAIYH-DG-K 439 (534)
T ss_pred eCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCe-------eeecCCCCccccCc-eEEEE-CC-E
Confidence 10 00111111112221 23567777632 357888887642 11111111111111 22222 23 5
Q ss_pred EEEEEeCC--------CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCC-----CcEEEEeCCCCc
Q 013827 353 LLATGSTD--------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDA 417 (436)
Q Consensus 353 ~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~ 417 (436)
+++.|+.+ ..+.+||..+.+...+............+.+ ++. +++.||.+ ..+.+||..+.+
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNK-IYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCE-EEEEcCCcCCcccceeEEEeCCCCE
Confidence 66666543 2388899988765433322211111122222 555 67777754 468889887654
No 394
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.39 E-value=0.69 Score=46.39 Aligned_cols=36 Identities=11% Similarity=0.317 Sum_probs=29.6
Q ss_pred CcccceeEEEecCCC--CcEEEEEeCCCcEEEEeCCCC
Q 013827 198 SHTDSVLGLAWNKEF--RNILASASADKQVKIWDVAAG 233 (436)
Q Consensus 198 ~h~~~v~~~~~~~~~--~~~l~s~~~dg~v~vwd~~~~ 233 (436)
.+...|..+.|+|.+ ...|+.-..|+++|+||+...
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 356789999999974 358888899999999999754
No 395
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.063 Score=54.24 Aligned_cols=147 Identities=16% Similarity=0.130 Sum_probs=92.2
Q ss_pred CeEEEEEcCCCCCEE--EEEECCCcEEEEecCCCCCcc-----------ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcE
Q 013827 245 KVQAVAWNHHSPQIL--LSGSFDRSVVMKDARISTHSG-----------FKWAVAADVESLAWDPHAEHSFVVSLEDGTI 311 (436)
Q Consensus 245 ~v~~~~~~~~~~~~l--~s~~~d~~i~~wd~~~~~~~~-----------~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i 311 (436)
++..+...+|+ ... +..+.+-.|..||+++-.... .......-..++.|+|.-+...++...|+.|
T Consensus 102 pi~~~v~~~D~-t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDA-TDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCC-ceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 55566666665 333 333344478899987543221 0111223456788999776678888899999
Q ss_pred EEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCC-CCCcEEEEE
Q 013827 312 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP-KAGAVFSVA 390 (436)
Q Consensus 312 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~ 390 (436)
++..+.... ..... -.-....++++|+|.| ..+++|...|++.-|...-.....+...+. ....|.+++
T Consensus 181 ~V~~~~~~~--------~~v~s-~p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~ 250 (1405)
T KOG3630|consen 181 RVKSTKQLA--------QNVTS-FPVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVT 250 (1405)
T ss_pred hhhhhhhhh--------hhhcc-cCcccceeeEEecccc-ceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEE
Confidence 988776541 11122 2245668999999999 899999999999988665432111111111 135799999
Q ss_pred EcCCCCcEEEEE
Q 013827 391 FSEDSPFVLAIG 402 (436)
Q Consensus 391 ~~~~~~~~l~s~ 402 (436)
|.....++++-+
T Consensus 251 Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 251 WLSTQEFLVVYG 262 (1405)
T ss_pred EecceeEEEEec
Confidence 998887644433
No 396
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.26 E-value=0.98 Score=41.93 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=27.1
Q ss_pred CCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 287 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 319 (436)
Q Consensus 287 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 319 (436)
..+.+++.+|.+ .+.++...=|.|.++|+.+.
T Consensus 308 R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~ 339 (415)
T PF14655_consen 308 REGESICLSPSG-RLAAVTDSLGRVLLIDVARG 339 (415)
T ss_pred ceEEEEEECCCC-CEEEEEcCCCcEEEEECCCC
Confidence 347889999986 68888888899999999987
No 397
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.12 E-value=1.5 Score=42.70 Aligned_cols=58 Identities=10% Similarity=0.127 Sum_probs=33.7
Q ss_pred CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 361 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 361 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
|.|.-+|+.+++. ....+.......+. ..-.+. +++.++.+|.++.+|..+|+.+.+.
T Consensus 441 g~l~AiD~~tGk~--~W~~~~~~p~~~~~-l~t~g~-lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 441 GSLIAWDPITGKI--VWEHKEDFPLWGGV-LATAGD-LVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred eeEEEEeCCCCce--eeEecCCCCCCCcc-eEECCc-EEEEECCCCeEEEEECCCCCEeEEE
Confidence 3466677777763 22222111111111 111334 5666888999999999999988653
No 398
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.09 E-value=1.8 Score=43.48 Aligned_cols=80 Identities=19% Similarity=0.195 Sum_probs=54.0
Q ss_pred cccceeEEEecCCCCcEEEEEeCCCcEEEEeCCC----------CeE--E-EEE--------cccCCCeEEEEEcCCC--
Q 013827 199 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA----------GKC--N-LTL--------EHHTDKVQAVAWNHHS-- 255 (436)
Q Consensus 199 h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~----------~~~--~-~~~--------~~~~~~v~~~~~~~~~-- 255 (436)
-.-.|..|.++|+|. +||..|..|. .|-.+.. ++. . +++ ..+...|..+.|+|.+
T Consensus 83 ~~f~v~~i~~n~~g~-~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 83 PLFEVHQISLNPTGS-LLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred CceeEEEEEECCCCC-EEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 345799999999984 7777777654 4433321 111 1 111 1345688999999974
Q ss_pred CCEEEEEECCCcEEEEecCCCCCcc
Q 013827 256 PQILLSGSFDRSVVMKDARISTHSG 280 (436)
Q Consensus 256 ~~~l~s~~~d~~i~~wd~~~~~~~~ 280 (436)
+..|+.=..|+++++||+.....+.
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~~p~ 185 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQHPW 185 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCCCCe
Confidence 3688888999999999997655444
No 399
>PRK10115 protease 2; Provisional
Probab=96.07 E-value=1.9 Score=43.52 Aligned_cols=249 Identities=11% Similarity=0.072 Sum_probs=122.1
Q ss_pred cccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCC-
Q 013827 74 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME- 152 (436)
Q Consensus 74 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d- 152 (436)
-.+..+.+||||++|+.+...++....++++.+...+... ...++.....+.| ++|++.|+....+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l------~~~i~~~~~~~~w-------~~D~~~~~y~~~~~ 193 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY------PELLDNVEPSFVW-------ANDSWTFYYVRKHP 193 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC------CccccCcceEEEE-------eeCCCEEEEEEecC
Confidence 3467789999999999997776666778888888655211 0111111223566 7888877665543
Q ss_pred -----CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCccccee-EEEecCCCCcEEEEEeC--CCc
Q 013827 153 -----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL-GLAWNKEFRNILASASA--DKQ 224 (436)
Q Consensus 153 -----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~--dg~ 224 (436)
..|+.+++.+....... + +........ .+..+.++..+++.... ++.
T Consensus 194 ~~~~~~~v~~h~lgt~~~~d~l-----------------------v--~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~ 248 (686)
T PRK10115 194 VTLLPYQVWRHTIGTPASQDEL-----------------------V--YEEKDDTFYVSLHKTTSKHYVVIHLASATTSE 248 (686)
T ss_pred CCCCCCEEEEEECCCChhHCeE-----------------------E--EeeCCCCEEEEEEEcCCCCEEEEEEECCcccc
Confidence 35666777654211110 0 111111222 22334365433433322 346
Q ss_pred EEEEeCC--CCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECC-C--cEEEEecCCCCCccceEee--eCCeeEEEeCCC
Q 013827 225 VKIWDVA--AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-R--SVVMKDARISTHSGFKWAV--AADVESLAWDPH 297 (436)
Q Consensus 225 v~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~--~i~~wd~~~~~~~~~~~~~--~~~i~~~~~~~~ 297 (436)
+.+++.. ++.....+..-......+. +..+ .+++....+ . .|...++...........+ ...+..+.+..
T Consensus 249 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~- 325 (686)
T PRK10115 249 VLLLDAELADAEPFVFLPRRKDHEYSLD-HYQH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT- 325 (686)
T ss_pred EEEEECcCCCCCceEEEECCCCCEEEEE-eCCC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-
Confidence 8888843 3332222221222222222 2223 333333322 2 3444444422222223333 23577777773
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEe-ccCCCeEEEEec--CCCCCEEEEEeC---CCcEEEEECCCC
Q 013827 298 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCTISYN--PLVPNLLATGST---DKMVKLWDLSNN 371 (436)
Q Consensus 298 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~--p~~~~~l~~~~~---d~~i~iwd~~~~ 371 (436)
..++++...+|.-+++-+.... .....+. .....+..+.++ +++..++++.+. -+.+..+|+.++
T Consensus 326 -~~l~~~~~~~g~~~l~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 326 -DWLVVEERQRGLTSLRQINRKT--------REVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred -CEEEEEEEeCCEEEEEEEcCCC--------CceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 3677777778876666554321 1122222 112223333344 344345555443 467888888876
Q ss_pred C
Q 013827 372 Q 372 (436)
Q Consensus 372 ~ 372 (436)
+
T Consensus 397 ~ 397 (686)
T PRK10115 397 E 397 (686)
T ss_pred c
Confidence 5
No 400
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.06 E-value=0.031 Score=33.69 Aligned_cols=31 Identities=29% Similarity=0.519 Sum_probs=28.1
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 013827 338 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 369 (436)
Q Consensus 338 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~ 369 (436)
...|..++|+|.. .+||.++.+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTM-DLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCC-CEEEEEECCCeEEEEECC
Confidence 4568999999998 899999999999999994
No 401
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=0.098 Score=52.97 Aligned_cols=142 Identities=15% Similarity=0.075 Sum_probs=87.0
Q ss_pred CCCCcEEEEee--CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEE
Q 013827 140 REKGNFMAVGS--MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 217 (436)
Q Consensus 140 s~~~~~l~~g~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 217 (436)
.+|+...++.. .+-.|..||+.+........ .+...-.........-..++.|+|.-....+
T Consensus 109 ~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~----------------~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~a 172 (1405)
T KOG3630|consen 109 FHDATDSVVVSTSNGEAVYSFDLEEFSESRYET----------------TVPLKNSATSFEKPVFQLKNVWNPLVPLNSA 172 (1405)
T ss_pred ccCCceEEEEEecCCceEEEEehHhhhhhhhhh----------------ccccccccchhccccccccccccCCccchhh
Confidence 56766655443 33378889987544322100 0001111111123345678889987555677
Q ss_pred EEeCCCcEEEEeCCCCeE-EEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCC--ccc-eEeeeCCeeEEE
Q 013827 218 SASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH--SGF-KWAVAADVESLA 293 (436)
Q Consensus 218 s~~~dg~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~-~~~~~~~i~~~~ 293 (436)
.+..|+.|++..+..... +..+. .....++++|+|.| ..++.|-..|++.-|...-... +.. .......|.++.
T Consensus 173 v~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~ 250 (1405)
T KOG3630|consen 173 VDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVT 250 (1405)
T ss_pred hhccccchhhhhhhhhhhhhcccC-cccceeeEEecccc-ceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEE
Confidence 888899999987754322 22333 45678999999999 8999999999999887653311 110 111257799999
Q ss_pred eCCCCC
Q 013827 294 WDPHAE 299 (436)
Q Consensus 294 ~~~~~~ 299 (436)
|-....
T Consensus 251 Wl~t~e 256 (1405)
T KOG3630|consen 251 WLSTQE 256 (1405)
T ss_pred Eeccee
Confidence 987543
No 402
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.98 E-value=1.1 Score=39.84 Aligned_cols=180 Identities=11% Similarity=0.155 Sum_probs=83.8
Q ss_pred EeCCCcEEEEeCCCCeE-EEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCC
Q 013827 219 ASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 297 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~ 297 (436)
++..|.|..=. +.++. ......-...+..+.-+++| .++++++....+.-||.-...-..........+..+.|.|+
T Consensus 120 ~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~ 197 (302)
T PF14870_consen 120 AGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPD 197 (302)
T ss_dssp EETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TT
T ss_pred EcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEccCccceehhceecCC
Confidence 34445443322 33332 22334455778889999999 77777765555667776543333333445678999999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEE
Q 013827 298 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 377 (436)
Q Consensus 298 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 377 (436)
+. +.+ ....|.|++=+........ .+.+.......-.+..++|.+++ ...++|+ .|.+ +.....++.-...
T Consensus 198 ~~-lw~-~~~Gg~~~~s~~~~~~~~w----~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg-~G~l-~~S~DgGktW~~~ 268 (302)
T PF14870_consen 198 GN-LWM-LARGGQIQFSDDPDDGETW----SEPIIPIKTNGYGILDLAYRPPN-EIWAVGG-SGTL-LVSTDGGKTWQKD 268 (302)
T ss_dssp S--EEE-EETTTEEEEEE-TTEEEEE-------B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-EE-
T ss_pred CC-EEE-EeCCcEEEEccCCCCcccc----ccccCCcccCceeeEEEEecCCC-CEEEEeC-CccE-EEeCCCCccceEC
Confidence 63 434 4488888887722210000 00011111223347899999876 5666554 4444 3455555421111
Q ss_pred -eeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 013827 378 -SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 411 (436)
Q Consensus 378 -~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 411 (436)
....-.+.++.+.|.++.+ -++ -+.+|.|--|
T Consensus 269 ~~~~~~~~n~~~i~f~~~~~-gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 269 RVGENVPSNLYRIVFVNPDK-GFV-LGQDGVLLRY 301 (302)
T ss_dssp GGGTTSSS---EEEEEETTE-EEE-E-STTEEEEE
T ss_pred ccccCCCCceEEEEEcCCCc-eEE-ECCCcEEEEe
Confidence 1122344688899877655 355 5678877655
No 403
>PHA03098 kelch-like protein; Provisional
Probab=95.92 E-value=0.38 Score=47.10 Aligned_cols=150 Identities=11% Similarity=0.096 Sum_probs=70.0
Q ss_pred cEEEEEeCC-----CcEEEEeCCCCeEEEE--EcccCCCeEEEEEcCCCCCEEEEEECC------CcEEEEecCCCCCcc
Q 013827 214 NILASASAD-----KQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFD------RSVVMKDARISTHSG 280 (436)
Q Consensus 214 ~~l~s~~~d-----g~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~ 280 (436)
.+++.|+.+ ..+..||..+++.... +....... +++. -++ .+++.|+.+ ..+..||+.+.+-..
T Consensus 344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~-~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 344 RIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN-VNN-LIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-ECC-EEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 577777765 3577888877653221 11111111 1221 234 667777632 357888877543211
Q ss_pred ce-EeeeCCeeEEEeCCCCCcEEEEEeCCC--------cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCC
Q 013827 281 FK-WAVAADVESLAWDPHAEHSFVVSLEDG--------TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP 351 (436)
Q Consensus 281 ~~-~~~~~~i~~~~~~~~~~~~~~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 351 (436)
.. ......-.++... ++.+++.|+.+. .+.+||..+.+ +..+..+.........+.+ ++
T Consensus 421 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-------W~~~~~~~~~r~~~~~~~~--~~- 488 (534)
T PHA03098 421 GSPLPISHYGGCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTNK-------WTELSSLNFPRINASLCIF--NN- 488 (534)
T ss_pred cCCCCccccCceEEEE--CCEEEEECCccCCCCCcccceEEEecCCCCc-------eeeCCCCCcccccceEEEE--CC-
Confidence 00 0000011112222 235667766432 37888887652 1111111111111122222 34
Q ss_pred CEEEEEeCC-----CcEEEEECCCCCceeEEe
Q 013827 352 NLLATGSTD-----KMVKLWDLSNNQPSCIAS 378 (436)
Q Consensus 352 ~~l~~~~~d-----~~i~iwd~~~~~~~~~~~ 378 (436)
.+++.|+.+ +.+.+||..+.+...+..
T Consensus 489 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 489 KIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred EEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 666777654 468888888776544333
No 404
>PHA02790 Kelch-like protein; Provisional
Probab=95.88 E-value=0.35 Score=46.46 Aligned_cols=181 Identities=10% Similarity=0.049 Sum_probs=86.9
Q ss_pred cEEEEEeCCC-----cEEEEeCCCCeEEEE--EcccCCCeEEEEEcCCCCCEEEEEECC--CcEEEEecCCCCCccceEe
Q 013827 214 NILASASADK-----QVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFD--RSVVMKDARISTHSGFKWA 284 (436)
Q Consensus 214 ~~l~s~~~dg-----~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~ 284 (436)
.+++.|+.++ .+..||..+++.... +.........+. -++ .+.+.|+.+ ..+..||..+..-.. ...
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~-~iYviGG~~~~~sve~ydp~~n~W~~-~~~ 348 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANN-KLYVVGGLPNPTSVERWFHGDAAWVN-MPS 348 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECC-EEEEECCcCCCCceEEEECCCCeEEE-CCC
Confidence 4667777543 477788877654322 111111111222 244 677777754 357778765432111 001
Q ss_pred ee---CCeeEEEeCCCCCcEEEEEeCCC---cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEe
Q 013827 285 VA---ADVESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS 358 (436)
Q Consensus 285 ~~---~~i~~~~~~~~~~~~~~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 358 (436)
.. .....+.. ++.+.+.|+.++ .+..||.++.. +.....+.........+.+ ++ .+.+.|
T Consensus 349 l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~-------W~~~~~m~~~r~~~~~~~~--~~-~IYv~G- 414 (480)
T PHA02790 349 LLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQ-------WQFGPSTYYPHYKSCALVF--GR-RLFLVG- 414 (480)
T ss_pred CCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCE-------EEeCCCCCCccccceEEEE--CC-EEEEEC-
Confidence 11 11122222 236777777543 46678876541 1111111111111122222 23 555555
Q ss_pred CCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCC-----CcEEEEeCCCCc
Q 013827 359 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDA 417 (436)
Q Consensus 359 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~ 417 (436)
|.+.+||..+.+...+.......... +++. -+++ +++.||.+ ..+..||..+++
T Consensus 415 --G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~-IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 415 --RNAEFYCESSNTWTLIDDPIYPRDNP-ELII-VDNK-LLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred --CceEEecCCCCcEeEcCCCCCCcccc-EEEE-ECCE-EEEECCcCCCcccceEEEEECCCCe
Confidence 35778999887754443332222222 2222 2455 67878754 357788877654
No 405
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.88 E-value=1.1 Score=39.00 Aligned_cols=159 Identities=11% Similarity=0.062 Sum_probs=89.3
Q ss_pred ceeEEEecCCCCcEEEEEeCC--CcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEe-cCCCCC
Q 013827 202 SVLGLAWNKEFRNILASASAD--KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD-ARISTH 278 (436)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~~~d--g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd-~~~~~~ 278 (436)
.+.+.++++++..+.+....+ ..+.++.. +.....+. ....+..-.|++++ ...+....+...+++. ......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCC-CEEEEEcCCCceEEEEecCCCcc
Confidence 688999999986444444223 34555543 33233321 22377888999997 7777666666666663 233222
Q ss_pred ccceE--e-eeCCeeEEEeCCCCCcEEEEEe--CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCE
Q 013827 279 SGFKW--A-VAADVESLAWDPHAEHSFVVSL--EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL 353 (436)
Q Consensus 279 ~~~~~--~-~~~~i~~~~~~~~~~~~~~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 353 (436)
..... . ....|..+.++|+|.+..++.. .++.|.+--+.............+..........+..+.|.+++ .+
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L 179 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TL 179 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EE
Confidence 22111 1 1128999999999976666552 35667766554332210000112222223345678999999988 55
Q ss_pred EEEEeC-CCcEEE
Q 013827 354 LATGST-DKMVKL 365 (436)
Q Consensus 354 l~~~~~-d~~i~i 365 (436)
++.+.. +..+..
T Consensus 180 ~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 180 VVLGRSAGGPVVR 192 (253)
T ss_pred EEEeCCCCCceeE
Confidence 555544 343433
No 406
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.82 E-value=0.65 Score=44.04 Aligned_cols=160 Identities=13% Similarity=0.241 Sum_probs=91.9
Q ss_pred CCeEEEEEcCCCCCEEEEEE--CCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCC---CcEEEEEeCCCcEEEEeCCC
Q 013827 244 DKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA---EHSFVVSLEDGTIKGFDIRT 318 (436)
Q Consensus 244 ~~v~~~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~dg~i~i~d~~~ 318 (436)
.++..++|.... ..+++.- .+|.+++=|. ...+.-..|..+.|.|-+ .--+++.-....|.+|.+..
T Consensus 20 HPvhGlaWTDGk-qVvLT~L~l~~gE~kfGds-------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTDGK-QVVLTDLQLHNGEPKFGDS-------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecCCC-EEEEEeeeeeCCccccCCc-------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 478888997433 5555542 2333332221 133444568889998852 12345555677899999863
Q ss_pred CCCCCCCCCCcccEEEecc-----CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcC
Q 013827 319 AKSDPDSTSQQSSFTLHAH-----DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 393 (436)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 393 (436)
...... +.+.....+ .--.....|+|.. ..|++-.....-.+++++.......... ...+.|.|.+|.+
T Consensus 92 s~~e~~----K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~ 165 (671)
T PF15390_consen 92 STTERN----KLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTK 165 (671)
T ss_pred Cccccc----cceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecC
Confidence 321111 111111111 1112467899987 6666655544445667665443233333 3466899999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 394 DSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 394 ~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
||+.++++.++.=.-+|||-....
T Consensus 166 DG~RLVVAvGSsLHSyiWd~~qKt 189 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDSAQKT 189 (671)
T ss_pred cCCEEEEEeCCeEEEEEecCchhh
Confidence 999777766666667889865543
No 407
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.77 E-value=1.5 Score=39.85 Aligned_cols=245 Identities=15% Similarity=0.113 Sum_probs=114.9
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCC---CCcEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---FRNIL 216 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~l 216 (436)
.|||++|++ ...|.|++++.+ +........ ..............++++|+ ...+.
T Consensus 10 ~pdG~l~v~-e~~G~i~~~~~~-g~~~~~v~~--------------------~~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 10 LPDGRLLVA-ERSGRIWVVDKD-GSLKTPVAD--------------------LPEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp ETTSCEEEE-ETTTEEEEEETT-TEECEEEEE---------------------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred eCCCcEEEE-eCCceEEEEeCC-CcCcceecc--------------------cccccccccCCcccceeccccCCCCEEE
Confidence 789887775 559999999933 222111100 00113345667899999994 12233
Q ss_pred EEEeCC--------CcEEEEeCCCC-------eEE-EEEcc---cCCCeEEEEEcCCCCCEEEEEECCC-----------
Q 013827 217 ASASAD--------KQVKIWDVAAG-------KCN-LTLEH---HTDKVQAVAWNHHSPQILLSGSFDR----------- 266 (436)
Q Consensus 217 ~s~~~d--------g~v~vwd~~~~-------~~~-~~~~~---~~~~v~~~~~~~~~~~~l~s~~~d~----------- 266 (436)
++.+.. ..|.-|....+ +.+ ..+.. .......|.|.|+| .++++.+..+
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~ 146 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSL 146 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSS
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccc
Confidence 333311 23444444332 111 12221 23355679999999 6666655432
Q ss_pred --cEEEEecCCCC-----------CccceEee-eCCeeEEEeCCCCCcEEEE-EeCCCcEEEEeCCCCCCC---------
Q 013827 267 --SVVMKDARIST-----------HSGFKWAV-AADVESLAWDPHAEHSFVV-SLEDGTIKGFDIRTAKSD--------- 322 (436)
Q Consensus 267 --~i~~wd~~~~~-----------~~~~~~~~-~~~i~~~~~~~~~~~~~~~-~~~dg~i~i~d~~~~~~~--------- 322 (436)
.|.-.+....- .....+.. -.....++|+|....++++ -+.++.=.|.-+..+..-
T Consensus 147 ~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~ 226 (331)
T PF07995_consen 147 RGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGP 226 (331)
T ss_dssp TTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSC
T ss_pred cceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCC
Confidence 23323322110 00111111 1235688999973344433 233333333333332210
Q ss_pred -----------CCCCCCcccEEEeccCCCeEEEEecCCC------CCEEEEEeCCCcEEEEECCCCCc-eeEEee-CCCC
Q 013827 323 -----------PDSTSQQSSFTLHAHDKAVCTISYNPLV------PNLLATGSTDKMVKLWDLSNNQP-SCIASR-NPKA 383 (436)
Q Consensus 323 -----------~~~~~~~~~~~~~~~~~~v~~~~~~p~~------~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~-~~~~ 383 (436)
.......+...+..| ..+..+.|.+.. +.++++.-..+.|....+..... .....+ ....
T Consensus 227 ~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 305 (331)
T PF07995_consen 227 KYSGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFG 305 (331)
T ss_dssp STTSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSS
T ss_pred CCCCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCC
Confidence 000112344555544 556677776422 14555555567788777764432 122222 3344
Q ss_pred CcEEEEEEcCCCCcEEEEEeCCCcEE
Q 013827 384 GAVFSVAFSEDSPFVLAIGGSKGKLE 409 (436)
Q Consensus 384 ~~v~~~~~~~~~~~~l~s~~~dg~i~ 409 (436)
..+..+++.|||. |+++.+.+|.|+
T Consensus 306 ~r~~~v~~~pDG~-Lyv~~d~~G~iy 330 (331)
T PF07995_consen 306 GRPRDVAQGPDGA-LYVSDDSDGKIY 330 (331)
T ss_dssp S-EEEEEEETTSE-EEEEE-TTTTEE
T ss_pred CCceEEEEcCCCe-EEEEECCCCeEe
Confidence 4799999999998 677777788774
No 408
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.69 E-value=1.2 Score=38.26 Aligned_cols=184 Identities=11% Similarity=0.084 Sum_probs=104.5
Q ss_pred cceeEEEecCCCCcEEEEEeCCC--cEEEEeCCCCeEEEEEccc-CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC
Q 013827 201 DSVLGLAWNKEFRNILASASADK--QVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 277 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 277 (436)
.-...+.|..+| .++-+.+.-| .|+.+|+.+++......-. ..---.+....+ .+..-.-.++...+||..+.+
T Consensus 45 aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 45 AFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp -EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETTTTE
T ss_pred ccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEccccce
Confidence 446678886665 5777777766 6999999999876655322 122233444432 455556678899999998876
Q ss_pred CccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec--cC---CCeEEEEecCCCCC
Q 013827 278 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HD---KAVCTISYNPLVPN 352 (436)
Q Consensus 278 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~---~~v~~~~~~p~~~~ 352 (436)
... .....+.-..++. ++ ..++.+..+..+.++|..+.+ ....+.- .. ..++-+.|- +| .
T Consensus 122 ~~~-~~~y~~EGWGLt~--dg-~~Li~SDGS~~L~~~dP~~f~---------~~~~i~V~~~g~pv~~LNELE~i-~G-~ 186 (264)
T PF05096_consen 122 KIG-TFPYPGEGWGLTS--DG-KRLIMSDGSSRLYFLDPETFK---------EVRTIQVTDNGRPVSNLNELEYI-NG-K 186 (264)
T ss_dssp EEE-EEE-SSS--EEEE--CS-SCEEEE-SSSEEEEE-TTT-S---------EEEEEE-EETTEE---EEEEEEE-TT-E
T ss_pred EEE-EEecCCcceEEEc--CC-CEEEEECCccceEEECCcccc---------eEEEEEEEECCEECCCcEeEEEE-cC-E
Confidence 654 3344556666663 34 356666667789999987652 2222221 12 234556665 23 3
Q ss_pred EEEEEeCCCcEEEEECCCCCceeEEeeC-------------CCCCcEEEEEEcCCCCcEEEEE
Q 013827 353 LLATGSTDKMVKLWDLSNNQPSCIASRN-------------PKAGAVFSVAFSEDSPFVLAIG 402 (436)
Q Consensus 353 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~l~s~ 402 (436)
+.|-.=....|...|..+++......+. ......+.+|+.|....+++||
T Consensus 187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 4433334556777777777643322111 1134689999999888777776
No 409
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.65 E-value=0.0013 Score=59.60 Aligned_cols=152 Identities=18% Similarity=0.235 Sum_probs=106.0
Q ss_pred cccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCC
Q 013827 199 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 278 (436)
Q Consensus 199 h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 278 (436)
+-.......|-|.+.+ ++.++.+..+..||- .++...... .++....++|..+++..++.+-..+.+.+||+.+...
T Consensus 33 alv~pi~~~w~~e~~n-lavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHN-LAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred hccccceeeEecCCCc-eehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence 4444556678888765 777778889999994 444444443 3456678899998877778888899999999987655
Q ss_pred ccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEe
Q 013827 279 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS 358 (436)
Q Consensus 279 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 358 (436)
.....+....-.-+.|++.. ..++.+...|.+.+++..+. ..+...-.|...++++++.+.+ +.+.++
T Consensus 110 qqLE~gg~~s~sll~wsKg~-~el~ig~~~gn~viynhgts---------R~iiv~Gkh~RRgtq~av~lEd--~vil~d 177 (615)
T KOG2247|consen 110 QQLESGGTSSKSLLAWSKGT-PELVIGNNAGNIVIYNHGTS---------RRIIVMGKHQRRGTQIAVTLED--YVILCD 177 (615)
T ss_pred HHHhccCcchHHHHhhccCC-ccccccccccceEEEeccch---------hhhhhhcccccceeEEEecccc--eeeecC
Confidence 44333333333336788854 57888888999999998876 3344444488899999999954 666666
Q ss_pred CCCcEEE
Q 013827 359 TDKMVKL 365 (436)
Q Consensus 359 ~d~~i~i 365 (436)
.|..+.+
T Consensus 178 cd~~L~v 184 (615)
T KOG2247|consen 178 CDNTLSV 184 (615)
T ss_pred cHHHHHH
Confidence 6654433
No 410
>PRK10115 protease 2; Provisional
Probab=95.29 E-value=3.8 Score=41.43 Aligned_cols=233 Identities=12% Similarity=0.052 Sum_probs=115.0
Q ss_pred CCCCCcEEEEeeCC-----CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCC
Q 013827 139 DREKGNFMAVGSME-----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR 213 (436)
Q Consensus 139 ~s~~~~~l~~g~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 213 (436)
+|||+++||.+... -.|++-|+.++..+... + ...-..++|.+++.
T Consensus 134 ~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~--------------------------i---~~~~~~~~w~~D~~ 184 (686)
T PRK10115 134 ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL--------------------------L---DNVEPSFVWANDSW 184 (686)
T ss_pred ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc--------------------------c---cCcceEEEEeeCCC
Confidence 38999999876433 35888888766433210 1 11114589999976
Q ss_pred cEEEEEeCC-----CcEEEEeCCCC--eEEEEEcccCCCeE-EEEEcCCCCCEEEEEEC---CCcEEEEecCCCCC-ccc
Q 013827 214 NILASASAD-----KQVKIWDVAAG--KCNLTLEHHTDKVQ-AVAWNHHSPQILLSGSF---DRSVVMKDARISTH-SGF 281 (436)
Q Consensus 214 ~~l~s~~~d-----g~v~vwd~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~-~~~ 281 (436)
.++++...+ ..|+.+++.++ +....+........ .+..+.++ .+++..+. ++.+.+++...... ...
T Consensus 185 ~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~-~~l~i~~~~~~~~~~~l~~~~~~~~~~~~ 263 (686)
T PRK10115 185 TFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSK-HYVVIHLASATTSEVLLLDAELADAEPFV 263 (686)
T ss_pred EEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCC-CEEEEEEECCccccEEEEECcCCCCCceE
Confidence 566665433 36888888887 33334443333333 33334466 44444333 35788888543211 121
Q ss_pred eEeeeCC-eeEEEeCCCCCcEEEEEeC-CCcEEEE--eCCCCCCCCCCCCCcccEEEecc-C-CCeEEEEecCCCCCEEE
Q 013827 282 KWAVAAD-VESLAWDPHAEHSFVVSLE-DGTIKGF--DIRTAKSDPDSTSQQSSFTLHAH-D-KAVCTISYNPLVPNLLA 355 (436)
Q Consensus 282 ~~~~~~~-i~~~~~~~~~~~~~~~~~~-dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~-~-~~v~~~~~~p~~~~~l~ 355 (436)
....... ...+. +. +..+++.... ....++. ++... .....+..+ . ..+..+.+.. ..+++
T Consensus 264 ~~~~~~~~~~~~~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~---------~~~~~l~~~~~~~~i~~~~~~~--~~l~~ 330 (686)
T PRK10115 264 FLPRRKDHEYSLD-HY-QHRFYLRSNRHGKNFGLYRTRVRDE---------QQWEELIPPRENIMLEGFTLFT--DWLVV 330 (686)
T ss_pred EEECCCCCEEEEE-eC-CCEEEEEEcCCCCCceEEEecCCCc---------ccCeEEECCCCCCEEEEEEEEC--CEEEE
Confidence 2222222 22222 22 2233333322 2233343 33321 112333344 2 3677787773 25777
Q ss_pred EEeCCCcEEEEECC--CCCceeEEeeC-CCCCcEEEEEEc--CCCCcEEEEEeC---CCcEEEEeCCCCc
Q 013827 356 TGSTDKMVKLWDLS--NNQPSCIASRN-PKAGAVFSVAFS--EDSPFVLAIGGS---KGKLEIWDTLSDA 417 (436)
Q Consensus 356 ~~~~d~~i~iwd~~--~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~l~s~~~---dg~i~iwd~~~~~ 417 (436)
+...++.-+++-+. +.. ...+. .....+..+.++ +++..++++.++ -+.+..+|+.+++
T Consensus 331 ~~~~~g~~~l~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 331 EERQRGLTSLRQINRKTRE---VIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEeCCEEEEEEEcCCCCc---eEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 77777775555443 332 22222 112223333444 444434444443 3568888887654
No 411
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.23 E-value=1.5 Score=36.53 Aligned_cols=101 Identities=17% Similarity=0.150 Sum_probs=61.5
Q ss_pred CCCCCCCCCcEE-EEeeCCCcEEEEe--CCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCC
Q 013827 135 CPLKDREKGNFM-AVGSMEPAIEIWD--LDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE 211 (436)
Q Consensus 135 ~~~~~s~~~~~l-~~g~~dg~i~vw~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 211 (436)
..++|+.+.+.+ .+-+.+-+|.-|| ..++....+..++.- ++.+....+.. -.++..-+
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dl-------------rk~~~~e~~~P-----DGm~ID~e 222 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDL-------------RKSQPFESLEP-----DGMTIDTE 222 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEe-------------ccCCCcCCCCC-----CcceEccC
Confidence 334446666655 4556677887788 555554443222110 00011111111 12333445
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCC
Q 013827 212 FRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH 254 (436)
Q Consensus 212 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 254 (436)
| ++.+++-..++|...|+.+|+.+.+++-....|++++|--.
T Consensus 223 G-~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 223 G-NLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred C-cEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 5 57777777889999999999999999888999999999654
No 412
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.97 E-value=2.1 Score=36.80 Aligned_cols=176 Identities=13% Similarity=0.096 Sum_probs=100.0
Q ss_pred CCCCcEEEEeeCCC--cEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEE
Q 013827 140 REKGNFMAVGSMEP--AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 217 (436)
Q Consensus 140 s~~~~~l~~g~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 217 (436)
..++.++-+.+.-| .|+.+|+.+++........ ..----.++...+ .+..
T Consensus 53 ~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~--------------------------~~~FgEGit~~~d--~l~q 104 (264)
T PF05096_consen 53 LDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP--------------------------PRYFGEGITILGD--KLYQ 104 (264)
T ss_dssp EETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T--------------------------TT--EEEEEEETT--EEEE
T ss_pred cCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC--------------------------ccccceeEEEECC--EEEE
Confidence 35677777777665 7899999887655432211 1111223333333 4555
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEee-----eCCeeEE
Q 013827 218 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-----AADVESL 292 (436)
Q Consensus 218 s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-----~~~i~~~ 292 (436)
-.-.++...+||..+.+.+.++.- ...=+.++ .++ ..|+.+.....|.++|..+.+......-. -..++.+
T Consensus 105 LTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg-~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNEL 180 (264)
T PF05096_consen 105 LTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--SDG-KRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNEL 180 (264)
T ss_dssp EESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECS-SCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEE
T ss_pred EEecCCeEEEEccccceEEEEEec-CCcceEEE--cCC-CEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeE
Confidence 666788999999999998888863 45667777 345 45677777888999998876554322211 1235555
Q ss_pred EeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEe---------------ccCCCeEEEEecCCCCCEEEEE
Q 013827 293 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---------------AHDKAVCTISYNPLVPNLLATG 357 (436)
Q Consensus 293 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---------------~~~~~v~~~~~~p~~~~~l~~~ 357 (436)
.+.. | .+.+=.-....|...|..++.. ...+. ....-.+.|++.|....+++||
T Consensus 181 E~i~-G-~IyANVW~td~I~~Idp~tG~V---------~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 181 EYIN-G-KIYANVWQTDRIVRIDPETGKV---------VGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEET-T-EEEEEETTSSEEEEEETTT-BE---------EEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEc-C-EEEEEeCCCCeEEEEeCCCCeE---------EEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 5552 3 3444444555566666666521 11110 1135579999999886777777
Q ss_pred e
Q 013827 358 S 358 (436)
Q Consensus 358 ~ 358 (436)
=
T Consensus 250 K 250 (264)
T PF05096_consen 250 K 250 (264)
T ss_dssp T
T ss_pred C
Confidence 3
No 413
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.80 E-value=1.1 Score=41.83 Aligned_cols=141 Identities=16% Similarity=0.207 Sum_probs=82.2
Q ss_pred EEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCC------cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccE
Q 013827 259 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE------HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF 332 (436)
Q Consensus 259 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 332 (436)
+..|+....++--|+..++.+. .+.....+ -+.|.|... ..-++|-.+..|.-.|.|... . ..
T Consensus 483 ~~dg~~~~kLykmDIErGkvve-eW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g--------N-Ki 551 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVE-EWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG--------N-KI 551 (776)
T ss_pred EecCCCcccceeeecccceeee-EeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccC--------C-ce
Confidence 3445555566666666665544 34444444 566776421 123445555555555665441 1 11
Q ss_pred EEeccCCCeEEEEecCC---CCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEE
Q 013827 333 TLHAHDKAVCTISYNPL---VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLE 409 (436)
Q Consensus 333 ~~~~~~~~v~~~~~~p~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~ 409 (436)
.........+.-.|+.- ...++|+++..|.|++||.-.-. ....+++-...|..+..+.+|.++|+|| ...+.
T Consensus 552 ~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r--AKtalP~lG~aIk~idvta~Gk~ilaTC--k~yll 627 (776)
T COG5167 552 KVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR--AKTALPGLGDAIKHIDVTANGKHILATC--KNYLL 627 (776)
T ss_pred eeeeehhccccccccccccccCceEEEecCCCceeeehhhcch--hhhcCcccccceeeeEeecCCcEEEEee--cceEE
Confidence 11112222222233321 12599999999999999976543 2334566677899999999999877766 45777
Q ss_pred EEeCC
Q 013827 410 IWDTL 414 (436)
Q Consensus 410 iwd~~ 414 (436)
+-|+.
T Consensus 628 L~d~~ 632 (776)
T COG5167 628 LTDVP 632 (776)
T ss_pred EEecc
Confidence 87775
No 414
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.70 E-value=2.6 Score=36.56 Aligned_cols=156 Identities=13% Similarity=0.119 Sum_probs=83.9
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEe-CCCCCCCC
Q 013827 245 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD-IRTAKSDP 323 (436)
Q Consensus 245 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d-~~~~~~~~ 323 (436)
.+.+.++++++..+.+....++.-.+|-........... ....+..-.|++++ .+.++...+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~~-- 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGTG-- 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCC-CEEEEEcCCCceEEEEecCCCcc--
Confidence 688999999994444444233333344333333322222 34478888999986 5566656666666663 222210
Q ss_pred CCCCCcccEEEecc--CCCeEEEEecCCCCCEEEEEe--CCCcEEEEECCC---CCce----eEEeeCCCCCcEEEEEEc
Q 013827 324 DSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGS--TDKMVKLWDLSN---NQPS----CIASRNPKAGAVFSVAFS 392 (436)
Q Consensus 324 ~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~--~d~~i~iwd~~~---~~~~----~~~~~~~~~~~v~~~~~~ 392 (436)
. ....... ...|..+.++|||.+..+... .++.|.+=-+.. +.+. ...........+..+.|.
T Consensus 101 -----~-~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 101 -----E-PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred -----e-eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 1 1112111 128999999999944444432 346666654431 2010 111112234578999999
Q ss_pred CCCCcEEEEEeCCCcEEE
Q 013827 393 EDSPFVLAIGGSKGKLEI 410 (436)
Q Consensus 393 ~~~~~~l~s~~~dg~i~i 410 (436)
+++..++++...++.+..
T Consensus 175 ~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 175 DDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred CCCEEEEEeCCCCCceeE
Confidence 999854444444443444
No 415
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.53 E-value=0.17 Score=29.53 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCC--CEEEEEECCCcEEEEecCC
Q 013827 244 DKVQAVAWNHHSP--QILLSGSFDRSVVMKDARI 275 (436)
Q Consensus 244 ~~v~~~~~~~~~~--~~l~s~~~d~~i~~wd~~~ 275 (436)
+.|.+++|+|... .+|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998764 6899998999999999995
No 416
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.52 E-value=3 Score=36.47 Aligned_cols=221 Identities=12% Similarity=0.097 Sum_probs=122.3
Q ss_pred cceeEEEecCCCCcEEEEEeCCCcEEEEeCC------CC-eEEEEEcc-----cCCCeEEEEEcCCC-----------CC
Q 013827 201 DSVLGLAWNKEFRNILASASADKQVKIWDVA------AG-KCNLTLEH-----HTDKVQAVAWNHHS-----------PQ 257 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~-----------~~ 257 (436)
..-+.|+++|.+ .+.++...-+...+||.. .. ..+..+.. .....+.+.|+... ..
T Consensus 23 ~N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 23 RNAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred cccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 346889999986 477777777899999986 11 22333331 23456777776443 12
Q ss_pred EEEEEECCCcEEEEecCCCCC---cc-ceEe--eeCCe-eEEEeC--CCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 013827 258 ILLSGSFDRSVVMKDARISTH---SG-FKWA--VAADV-ESLAWD--PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQ 328 (436)
Q Consensus 258 ~l~s~~~d~~i~~wd~~~~~~---~~-~~~~--~~~~i-~~~~~~--~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~ 328 (436)
.++.+++||+|.-|....... .. .... ....+ ..+++. ..+..+.++-...++|.+||-.-........-.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 367889999999998643332 11 1111 11222 233433 334456666678899999986543211000000
Q ss_pred cc----------cEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcC-----
Q 013827 329 QS----------SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE----- 393 (436)
Q Consensus 329 ~~----------~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~----- 393 (436)
.+ +..+ +..-.|+-..-.++. +.=+.|..-|.|-+||....- .......+.-..-+.|+..|
T Consensus 182 DP~iPagyAPFnIqni-g~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G~l-~~r~as~g~LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 182 DPALPAGYAPFNVQNL-GGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNGQL-LRRVASSGRLNAPWGLAIAPESFGS 258 (336)
T ss_pred CCCCCCCCCCcceEEE-CCeEEEEEEecCCcc-cccccCCCcceEEEEcCCCcE-EEEeccCCcccCCceeeeChhhhCC
Confidence 00 0000 001111222222222 222333445789999987543 22223334445667787765
Q ss_pred -CCCcEEEEEeCCCcEEEEeCCCCccccccccCC
Q 013827 394 -DSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 426 (436)
Q Consensus 394 -~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (436)
.+. +|+---.||+|..||..+++.+..+....
T Consensus 259 ~sg~-lLVGNFGDG~InaFD~~sG~~~g~L~~~~ 291 (336)
T TIGR03118 259 LSGA-LLVGNFGDGTINAYDPQSGAQLGQLLDPD 291 (336)
T ss_pred CCCC-eEEeecCCceeEEecCCCCceeeeecCCC
Confidence 455 67766679999999999998776655443
No 417
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.49 E-value=0.2 Score=29.31 Aligned_cols=33 Identities=36% Similarity=0.448 Sum_probs=26.9
Q ss_pred CcEEEEEEcCCCC--cEEEEEeCCCcEEEEeCCCC
Q 013827 384 GAVFSVAFSEDSP--FVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 384 ~~v~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~ 416 (436)
+.+.++.|+|... -+|+.+-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999997543 47888888899999999863
No 418
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.16 E-value=0.11 Score=51.37 Aligned_cols=170 Identities=15% Similarity=0.149 Sum_probs=94.1
Q ss_pred CccccccceeccCC-ceEEEEEecCCcceeEEEEEecCCCC-CCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 72 DSEDLEDMTINPND-AVIVCARNEDDVSHLEVYILEESDGG-DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 72 ~~~~v~~~~~sp~~-~~l~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
..+.|.+++|-... +.++ ..++.+-||..+.-+++ ...+..+-..+....+--+.|+++ -++.-++..+
T Consensus 131 f~G~v~dl~fah~~~pk~~-----~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~----~~~~~~ic~~ 201 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR-----RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPI----AVNKVYICYG 201 (1283)
T ss_pred CCCCcccccccccCChHHH-----HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccc----ccccceeeec
Confidence 34566777775321 1111 11222344444443333 335666666666666666778665 4556788888
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEE-----------ecCCCCcEEEE
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA-----------WNKEFRNILAS 218 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-----------~~~~~~~~l~s 218 (436)
-.+++|++.++++... ..+.+|...+..++ .+||| +.+|.
T Consensus 202 ~~~~~i~lL~~~ra~~----------------------------~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~ 252 (1283)
T KOG1916|consen 202 LKGGEIRLLNINRALR----------------------------SLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAW 252 (1283)
T ss_pred cCCCceeEeeechHHH----------------------------HHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEE
Confidence 8999999988764221 11334655555554 47886 58888
Q ss_pred EeCCCcEEEEeCCC-C----eEEEEEcccC-CCeEEEEEcCCCC--------CEEEEEE-CCCcEEEEecCCCCCc
Q 013827 219 ASADKQVKIWDVAA-G----KCNLTLEHHT-DKVQAVAWNHHSP--------QILLSGS-FDRSVVMKDARISTHS 279 (436)
Q Consensus 219 ~~~dg~v~vwd~~~-~----~~~~~~~~~~-~~v~~~~~~~~~~--------~~l~s~~-~d~~i~~wd~~~~~~~ 279 (436)
++.||.++.|.+.- + ++....+.|. .+-.|..++.... .++++++ .+..+++|.....++.
T Consensus 253 a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 253 AISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 88888888887641 2 3444455565 3333333332210 1233333 3456788876655444
No 419
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.06 E-value=2.5 Score=37.55 Aligned_cols=152 Identities=9% Similarity=0.068 Sum_probs=73.4
Q ss_pred CcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC-C
Q 013827 198 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-S 276 (436)
Q Consensus 198 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~ 276 (436)
.-...+..+.-+++| .+++++.......-||.-...-...-..-...|.+|.|.|++ .+.+ ....|.|++=+... .
T Consensus 142 ~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~-~lw~-~~~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 142 ETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDG-NLWM-LARGGQIQFSDDPDDG 218 (302)
T ss_dssp S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEE
T ss_pred CCcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEccCccceehhceecCCC-CEEE-EeCCcEEEEccCCCCc
Confidence 345778889999997 477777665556677754322222223346789999999998 5544 44888888876211 1
Q ss_pred CC----ccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEe---ccCCCeEEEEecCC
Q 013827 277 TH----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPL 349 (436)
Q Consensus 277 ~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~ 349 (436)
.. ..........+..++|.+++ .+.+ ++..|.+ +.....+ +.-.... .-...+..+.|.+.
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~-~~wa-~gg~G~l-~~S~DgG---------ktW~~~~~~~~~~~n~~~i~f~~~ 286 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPN-EIWA-VGGSGTL-LVSTDGG---------KTWQKDRVGENVPSNLYRIVFVNP 286 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS--EEE-EESTT-E-EEESSTT---------SS-EE-GGGTTSSS---EEEEEET
T ss_pred cccccccCCcccCceeeEEEEecCCC-CEEE-EeCCccE-EEeCCCC---------ccceECccccCCCCceEEEEEcCC
Confidence 11 00011223448899999865 3444 4455544 3344444 2222222 22345778888764
Q ss_pred CCCEEEEEeCCCcEEEE
Q 013827 350 VPNLLATGSTDKMVKLW 366 (436)
Q Consensus 350 ~~~~l~~~~~d~~i~iw 366 (436)
. .-+ +-+.+|.|.-|
T Consensus 287 ~-~gf-~lG~~G~ll~~ 301 (302)
T PF14870_consen 287 D-KGF-VLGQDGVLLRY 301 (302)
T ss_dssp T-EEE-EE-STTEEEEE
T ss_pred C-ceE-EECCCcEEEEe
Confidence 3 344 44567766544
No 420
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.75 E-value=3.6 Score=34.46 Aligned_cols=149 Identities=12% Similarity=0.154 Sum_probs=88.5
Q ss_pred CCeEEEEEcCCCCCEEEEEEC----------CCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEE
Q 013827 244 DKVQAVAWNHHSPQILLSGSF----------DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 313 (436)
Q Consensus 244 ~~v~~~~~~~~~~~~l~s~~~----------d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i 313 (436)
...+.-..+|+| +++ .|.. .|.++.|-.. ..+...+..-.-.+.++|+.+...+.++-+.+-+|.-
T Consensus 109 nR~NDgkvdP~G-ryy-~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 109 NRLNDGKVDPDG-RYY-GGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred cccccCccCCCC-cee-eeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 445666778998 553 3322 2344444332 2223334444556788999888777777788888877
Q ss_pred Ee--CCCCCCCCCCCCCcccEEEec----cCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEE
Q 013827 314 FD--IRTAKSDPDSTSQQSSFTLHA----HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF 387 (436)
Q Consensus 314 ~d--~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 387 (436)
|| ..++..... ..+..+.. .....-.++....| .+.++.-..++|...|..+++......++ ...|+
T Consensus 185 ~dyd~~tG~~snr----~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va~~ng~~V~~~dp~tGK~L~eiklP--t~qit 257 (310)
T KOG4499|consen 185 YDYDCPTGDLSNR----KVIFDLRKSQPFESLEPDGMTIDTEG-NLYVATFNGGTVQKVDPTTGKILLEIKLP--TPQIT 257 (310)
T ss_pred eecCCCcccccCc----ceeEEeccCCCcCCCCCCcceEccCC-cEEEEEecCcEEEEECCCCCcEEEEEEcC--CCceE
Confidence 87 555532211 22333322 11112344555566 77778888899999999999965554444 66899
Q ss_pred EEEEcCCC-CcEEEEEe
Q 013827 388 SVAFSEDS-PFVLAIGG 403 (436)
Q Consensus 388 ~~~~~~~~-~~~l~s~~ 403 (436)
+++|-..+ ..+.+|+.
T Consensus 258 sccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 258 SCCFGGKNLDILYVTTA 274 (310)
T ss_pred EEEecCCCccEEEEEeh
Confidence 99997542 32344443
No 421
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.70 E-value=2.6 Score=41.28 Aligned_cols=120 Identities=12% Similarity=0.102 Sum_probs=70.5
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc-ceEeeeCCeeEEEeC--CCCCcEEEEEeCCCcEEEEeCCCCCC
Q 013827 245 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWD--PHAEHSFVVSLEDGTIKGFDIRTAKS 321 (436)
Q Consensus 245 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~i~~~~~~--~~~~~~~~~~~~dg~i~i~d~~~~~~ 321 (436)
.+.-+.-+..+ ...++-+....+.|||.+...... ..+...+.|..+.|. |++ +.+++.+-...|.+|.-.....
T Consensus 31 ~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhh
Confidence 44445555544 444444555679999998776332 122447789999986 455 4566666677788876432221
Q ss_pred CCCCCCCcccEEE--eccC-CCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 013827 322 DPDSTSQQSSFTL--HAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLS 369 (436)
Q Consensus 322 ~~~~~~~~~~~~~--~~~~-~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~ 369 (436)
....+...++..+ ..++ .+|.+..|.++| .+++ |+ ++.+.|+|-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~LvV-~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-TLVV-GS-GNQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCC-eEEE-Ee-CCEEEEECCC
Confidence 1122223333333 3444 689999999988 4444 33 4568887653
No 422
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.69 E-value=2.7 Score=39.34 Aligned_cols=140 Identities=19% Similarity=0.125 Sum_probs=87.7
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCC------CEEEEEECCCcEEEEecCCCCCccceEeee--
Q 013827 215 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP------QILLSGSFDRSVVMKDARISTHSGFKWAVA-- 286 (436)
Q Consensus 215 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-- 286 (436)
++..|+....++-.|++.|+.+.....|... -+.|.|... ..-+.|-.+..|.-.|.|............
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY 559 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDY 559 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhc
Confidence 3345566667888899999999988877655 466776531 123456666677767777554222122222
Q ss_pred ---CCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcE
Q 013827 287 ---ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 363 (436)
Q Consensus 287 ---~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i 363 (436)
....+..-... .++++++..|-|++||--.. .....+.+-...|..+..+.+|..+|||| ...+
T Consensus 560 ~tKn~Fss~~tTes--GyIa~as~kGDirLyDRig~---------rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yl 626 (776)
T COG5167 560 KTKNKFSSGMTTES--GYIAAASRKGDIRLYDRIGK---------RAKTALPGLGDAIKHIDVTANGKHILATC--KNYL 626 (776)
T ss_pred cccccccccccccC--ceEEEecCCCceeeehhhcc---------hhhhcCcccccceeeeEeecCCcEEEEee--cceE
Confidence 22333333333 48999999999999996543 22344556677888999999984444444 3456
Q ss_pred EEEECC
Q 013827 364 KLWDLS 369 (436)
Q Consensus 364 ~iwd~~ 369 (436)
.+-|++
T Consensus 627 lL~d~~ 632 (776)
T COG5167 627 LLTDVP 632 (776)
T ss_pred EEEecc
Confidence 666664
No 423
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.53 E-value=0.44 Score=43.52 Aligned_cols=170 Identities=13% Similarity=0.047 Sum_probs=94.8
Q ss_pred EEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEee--eC----Cee-EEEeCCCCCcEEEEEeCC
Q 013827 236 NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV--AA----DVE-SLAWDPHAEHSFVVSLED 308 (436)
Q Consensus 236 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~----~i~-~~~~~~~~~~~~~~~~~d 308 (436)
+..+......|..+-..|++ +.+..-+. ..+.++++.+.......... ++ .++ ++..- .|..-+.+++.|
T Consensus 213 i~~L~~~~~~v~qllL~Pdg-~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL-~Gg~SLLv~~~d 289 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDG-KTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLL-SGGFSLLVVHED 289 (733)
T ss_pred hhhcCCCccchHhhEECCCC-CEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHH-hCceeEEEEcCC
Confidence 33344455677888899999 65555444 67888887655433221111 11 111 11111 244667888889
Q ss_pred CcEEEE-eCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEE
Q 013827 309 GTIKGF-DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF 387 (436)
Q Consensus 309 g~i~i~-d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 387 (436)
|-|.-| |.+...... ...++.++-...++..+.-..+. +-+++-...|++.++.....+.... +.-...+.
T Consensus 290 G~vsQWFdvr~~~~p~----l~h~R~f~l~pa~~~~l~pe~~r-kgF~~l~~~G~L~~f~st~~~~lL~---~~~~~~~~ 361 (733)
T COG4590 290 GLVSQWFDVRRDGQPH----LNHIRNFKLAPAEVQFLLPETNR-KGFYSLYRNGTLQSFYSTSEKLLLF---ERAYQAPQ 361 (733)
T ss_pred CceeeeeeeecCCCCc----ceeeeccccCcccceeecccccc-ceEEEEcCCCceeeeecccCcceeh---hhhhcCcc
Confidence 888776 666552211 11122222222333333322222 5677778888888876555443222 11122566
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 388 SVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 388 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
-+++||.+.+ ++ .-..|.++++.+++...
T Consensus 362 ~~~~Sp~~~~-Ll-~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 362 LVAMSPNQAY-LL-SEDQGKIRLAQLENRNP 390 (733)
T ss_pred eeeeCcccch-he-eecCCceEEEEecCCCC
Confidence 7899999997 54 45668899999887643
No 424
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.51 E-value=1 Score=42.78 Aligned_cols=123 Identities=16% Similarity=0.304 Sum_probs=72.0
Q ss_pred ccccccceeccCC----ceEEEEEecCCcceeEEEEEecCCCCCCceeeeccccc----CcCcceeecccCCCCCCCCCc
Q 013827 73 SEDLEDMTINPND----AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIII----PAFPLCMAWLDCPLKDREKGN 144 (436)
Q Consensus 73 ~~~v~~~~~sp~~----~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~~~ 144 (436)
=+.|..+.|.|-+ +.|++..... ++.||.......+..+++......+ |-.|...-| +|...
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkk---hVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVW-------HPk~~ 125 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKK---HVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVW-------HPKKA 125 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccc---eEEEEEeccCccccccceeeeeeeccCCcccCCCcccc-------cCCCc
Confidence 3679999999963 3444443332 3456655443444445555444433 223333444 99999
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCc
Q 013827 145 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ 224 (436)
Q Consensus 145 ~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 224 (436)
.|++-.....-.+.++..... +++.-. .-.+.|.|.+|.+||..++++.+..=.
T Consensus 126 iL~VLT~~dvSV~~sV~~d~s-------------------------rVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLH 179 (671)
T PF15390_consen 126 ILTVLTARDVSVLPSVHCDSS-------------------------RVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLH 179 (671)
T ss_pred eEEEEecCceeEeeeeeeCCc-------------------------eEEEec-cCCceEEEEEecCcCCEEEEEeCCeEE
Confidence 998877665555666643221 111112 346789999999998655555555455
Q ss_pred EEEEeCC
Q 013827 225 VKIWDVA 231 (436)
Q Consensus 225 v~vwd~~ 231 (436)
-++||-.
T Consensus 180 SyiWd~~ 186 (671)
T PF15390_consen 180 SYIWDSA 186 (671)
T ss_pred EEEecCc
Confidence 6788843
No 425
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.44 E-value=8 Score=38.55 Aligned_cols=113 Identities=10% Similarity=0.039 Sum_probs=74.8
Q ss_pred ceeEEEecCC-CCcEEEEEeCCCcEEEEeCCC-------C----e---------EEEEEcccCCCeEEEEEc--CCCCCE
Q 013827 202 SVLGLAWNKE-FRNILASASADKQVKIWDVAA-------G----K---------CNLTLEHHTDKVQAVAWN--HHSPQI 258 (436)
Q Consensus 202 ~v~~~~~~~~-~~~~l~s~~~dg~v~vwd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~~ 258 (436)
.|+-|....- +...|+.|..||.|.+|.+++ . + +...+. ....+++++++ ... ++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~-rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS-RL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc-eE
Confidence 4555554432 235899999999999997631 0 0 111222 34578999998 555 78
Q ss_pred EEEEECCCcEEEEecCCC--CCc-cceEeeeCCeeEEEeCCCC--C---cEEEEEeCCCcEEEEeC
Q 013827 259 LLSGSFDRSVVMKDARIS--THS-GFKWAVAADVESLAWDPHA--E---HSFVVSLEDGTIKGFDI 316 (436)
Q Consensus 259 l~s~~~d~~i~~wd~~~~--~~~-~~~~~~~~~i~~~~~~~~~--~---~~~~~~~~dg~i~i~d~ 316 (436)
||+++....|.||-.... +.. .....+...|.+|+|.++. + ..+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888888765542 111 1123466778899987753 2 26778899999999888
No 426
>PHA02790 Kelch-like protein; Provisional
Probab=93.41 E-value=7.8 Score=37.35 Aligned_cols=97 Identities=11% Similarity=0.007 Sum_probs=45.2
Q ss_pred cEEEEEeCCC---cEEEEeCCCCeEEEEE--cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccce-Eee-e
Q 013827 214 NILASASADK---QVKIWDVAAGKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WAV-A 286 (436)
Q Consensus 214 ~~l~s~~~dg---~v~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~-~ 286 (436)
.+.+.|+.++ .+..||..+.+-...- ....... +++ .-++ .+.+.| |.+..||.++..=.... ... .
T Consensus 364 ~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~-~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r 437 (480)
T PHA02790 364 VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGR-RLFLVG---RNAEFYCESSNTWTLIDDPIYPR 437 (480)
T ss_pred EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECC-EEEEEC---CceEEecCCCCcEeEcCCCCCCc
Confidence 4667776553 4778888776543211 1111111 121 2234 556665 34677887654321100 011 1
Q ss_pred CCeeEEEeCCCCCcEEEEEeCC-----CcEEEEeCCCC
Q 013827 287 ADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTA 319 (436)
Q Consensus 287 ~~i~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~ 319 (436)
.....+.. ++.++++|+.+ ..+..||..+.
T Consensus 438 ~~~~~~v~---~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 438 DNPELIIV---DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cccEEEEE---CCEEEEECCcCCCcccceEEEEECCCC
Confidence 11222222 22577777654 34666666654
No 427
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.33 E-value=3 Score=40.99 Aligned_cols=161 Identities=11% Similarity=0.114 Sum_probs=81.5
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEE--E--cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEe-cCCC
Q 013827 202 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT--L--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD-ARIS 276 (436)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd-~~~~ 276 (436)
.+-.+.|+.+ ..|++...+|++++|++-.. .+.. . ......|..+.+..+| ++.-..+|.+.+-. ....
T Consensus 85 ~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~G---Vavlt~~g~v~~i~~~~~~ 158 (829)
T KOG2280|consen 85 ELIGMGWSDD--EELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNG---VAVLTVSGQVILINGVEEP 158 (829)
T ss_pred CeeeecccCC--ceEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCc---eEEEecCCcEEEEcCCCcc
Confidence 7889999988 36888999999999998543 2222 1 2223345556665566 44444556554433 2221
Q ss_pred CCccceEe---eeCCeeEEEeCCCCC--cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCC
Q 013827 277 THSGFKWA---VAADVESLAWDPHAE--HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP 351 (436)
Q Consensus 277 ~~~~~~~~---~~~~i~~~~~~~~~~--~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 351 (436)
.... ... ...+-.+-...+++. ..++--...--..++-..... .....+......+..+..+|+.
T Consensus 159 ~~~~-~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~--------~q~~~~~~~~~~~~ki~VS~n~- 228 (829)
T KOG2280|consen 159 KLRK-MPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESR--------VQLHALSWPNSSVVKISVSPNR- 228 (829)
T ss_pred hhhh-CCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccc--------ccccccCCCCceEEEEEEcCCc-
Confidence 1111 100 000111111111111 111111100001122222110 1112222224567789999988
Q ss_pred CEEEEEeCCCcEEEEECCCCCceeEEe
Q 013827 352 NLLATGSTDKMVKLWDLSNNQPSCIAS 378 (436)
Q Consensus 352 ~~l~~~~~d~~i~iwd~~~~~~~~~~~ 378 (436)
.+|+--...|.|.+-++...+..+...
T Consensus 229 ~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 229 RFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ceEEEEecCCcEEEEecchhhhhhccC
Confidence 899999999999999887766444433
No 428
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.25 E-value=3.5 Score=40.46 Aligned_cols=104 Identities=13% Similarity=0.183 Sum_probs=64.1
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEec--CCCCCEEEEEeCCCcEEEEECC-----CC-
Q 013827 300 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN--PLVPNLLATGSTDKMVKLWDLS-----NN- 371 (436)
Q Consensus 300 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~~~~~d~~i~iwd~~-----~~- 371 (436)
+..++......+.|||.+.+. .+....+ .....|..+.|. |++ +.+++.+..+.|.+|.-. ..
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~-------lE~~~~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGV-------LEYEESF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcE-------EEEeeee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhhhcCC
Confidence 344455556679999999872 1111122 346789999886 566 677777788888888542 11
Q ss_pred ---CceeEEeeCCCC-CcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 372 ---QPSCIASRNPKA-GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 372 ---~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
.+........+. .+|.+..|.++|. +++ |+ ++.+.|+|-.-
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV-~s-GNqlfv~dk~~ 157 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVV-GS-GNQLFVFDKWL 157 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEecCCe-EEE-Ee-CCEEEEECCCc
Confidence 111222233333 5799999999996 333 33 35788887543
No 429
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.24 E-value=7.2 Score=36.45 Aligned_cols=247 Identities=11% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEE---ecCCCCcEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA---WNKEFRNIL 216 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~---~~~~~~~~l 216 (436)
..+...+++|+..|.++||+....+.......+.. .-..+|..++ |.+......
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-----------------------~l~~PILqv~~G~F~s~~~~~~ 90 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-----------------------QLKDPILQVECGKFVSGSEDLQ 90 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEE-----------------------ecCCcEEEEEeccccCCCCcce
Q ss_pred EEEeCCCcEEEEeC---------CCCeEEEEEcccCCCeEEEEE------cCCCCCEEEEEECCCcEEEEecCCCCCccc
Q 013827 217 ASASADKQVKIWDV---------AAGKCNLTLEHHTDKVQAVAW------NHHSPQILLSGSFDRSVVMKDARISTHSGF 281 (436)
Q Consensus 217 ~s~~~dg~v~vwd~---------~~~~~~~~~~~~~~~v~~~~~------~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 281 (436)
++.-.-..+.||.+ .+.-.+..+..|.-.-.+..+ ...+..++.+-+.||.+.+++-+.-.....
T Consensus 91 LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~ 170 (418)
T PF14727_consen 91 LAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRF 170 (418)
T ss_pred EEEecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEE
Q ss_pred eEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCC--------------CCCCcccEEEeccCCCeEEEEec
Q 013827 282 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD--------------STSQQSSFTLHAHDKAVCTISYN 347 (436)
Q Consensus 282 ~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~--------------~~~~~~~~~~~~~~~~v~~~~~~ 347 (436)
... ---..-+.+.+.. ..+++++.+..+..|.......... .....+..++......+.-....
T Consensus 171 lp~-~llPgPl~Y~~~t-Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~ 248 (418)
T PF14727_consen 171 LPD-FLLPGPLCYCPRT-DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVR 248 (418)
T ss_pred cCC-CCCCcCeEEeecC-CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEE
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEE----cCCCCcEEEEEeCCCcEEEEe
Q 013827 348 PLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF----SEDSPFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 348 p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~l~s~~~dg~i~iwd 412 (436)
-.+..--+..=...++.+.+... .......++........... .|..+..++.++.++.+.||.
T Consensus 249 ~~~~~~~IvvLger~Lf~l~~~G-~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 249 FSSSESDIVVLGERSLFCLKDNG-SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred cCCCCceEEEEecceEEEEcCCC-eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
No 430
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.23 E-value=8.9 Score=37.43 Aligned_cols=201 Identities=17% Similarity=0.168 Sum_probs=108.9
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcccC-CCeE----------EEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE
Q 013827 215 ILASASADKQVKIWDVAAGKCNLTLEHHT-DKVQ----------AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW 283 (436)
Q Consensus 215 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-~~v~----------~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 283 (436)
.++.++.++.|.-.|..+|+.+..+.... ..+. .+++. + ..++.++.|+.|.-.|.++++..-...
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~-~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--D-GKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--C-CEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 67777778899999999998887764211 1111 11221 2 356778889999999998887653221
Q ss_pred eeeCC-eeEEEeCC--CCCcEEEEEe------CCCcEEEEeCCCCCCCCCCCCCccc----------------------E
Q 013827 284 AVAAD-VESLAWDP--HAEHSFVVSL------EDGTIKGFDIRTAKSDPDSTSQQSS----------------------F 332 (436)
Q Consensus 284 ~~~~~-i~~~~~~~--~~~~~~~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~----------------------~ 332 (436)
..... -..+.-.| .+. .++++. .+|.|.-+|.++++..-........ .
T Consensus 148 ~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred cccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 11000 00111111 122 344443 2688999999887542110000000 0
Q ss_pred EEeccCCCe-EEEEecCCCCCEEEEEeCC-----C-----------cEEEEECCCCCceeEEeeCCCCC-------cEEE
Q 013827 333 TLHAHDKAV-CTISYNPLVPNLLATGSTD-----K-----------MVKLWDLSNNQPSCIASRNPKAG-------AVFS 388 (436)
Q Consensus 333 ~~~~~~~~v-~~~~~~p~~~~~l~~~~~d-----~-----------~i~iwd~~~~~~~~~~~~~~~~~-------~v~~ 388 (436)
....-...+ ..+.+.|.. .+++.+... + .|.-.|+++++..-.+....|.. ...-
T Consensus 227 ~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred ccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 000001111 234666655 555555422 2 56667888888544444333321 1122
Q ss_pred EEEcCCCC--cEEEEEeCCCcEEEEeCCCCcccc
Q 013827 389 VAFSEDSP--FVLAIGGSKGKLEIWDTLSDAGIS 420 (436)
Q Consensus 389 ~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~ 420 (436)
+.+..+|+ -+++.+..+|.+++.|..+++.+.
T Consensus 306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred EEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 23334554 468889999999999999999863
No 431
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.86 E-value=5.7 Score=34.21 Aligned_cols=237 Identities=12% Similarity=0.056 Sum_probs=128.1
Q ss_pred CCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcE
Q 013827 136 PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 215 (436)
Q Consensus 136 ~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 215 (436)
.++..|||..-.++...|.|--.|-.+++.... --+....-..|..-|+|...
T Consensus 66 dvapapdG~VWft~qg~gaiGhLdP~tGev~~y---------------------------pLg~Ga~Phgiv~gpdg~~W 118 (353)
T COG4257 66 DVAPAPDGAVWFTAQGTGAIGHLDPATGEVETY---------------------------PLGSGASPHGIVVGPDGSAW 118 (353)
T ss_pred ccccCCCCceEEecCccccceecCCCCCceEEE---------------------------ecCCCCCCceEEECCCCCee
Confidence 334477887777777766666666555443321 11233445566777886533
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEE----cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeE
Q 013827 216 LASASADKQVKIWDVAAGKCNLTL----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVES 291 (436)
Q Consensus 216 l~s~~~dg~v~vwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~ 291 (436)
+ +-+.. -|.-.|.++.+. .++ +.-........|.+.| ++-+++.. |.---.|.................+.
T Consensus 119 i-td~~~-aI~R~dpkt~ev-t~f~lp~~~a~~nlet~vfD~~G-~lWFt~q~-G~yGrLdPa~~~i~vfpaPqG~gpyG 193 (353)
T COG4257 119 I-TDTGL-AIGRLDPKTLEV-TRFPLPLEHADANLETAVFDPWG-NLWFTGQI-GAYGRLDPARNVISVFPAPQGGGPYG 193 (353)
T ss_pred E-ecCcc-eeEEecCcccce-EEeecccccCCCcccceeeCCCc-cEEEeecc-ccceecCcccCceeeeccCCCCCCcc
Confidence 3 32222 455555555443 222 2234567788899999 77777753 21111122111111111223455778
Q ss_pred EEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 013827 292 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 371 (436)
Q Consensus 292 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~ 371 (436)
++..|+|+ +.++.-.+..|-..|...... +.+..-.........+--+|.+ +.-++-...+.+..||-...
T Consensus 194 i~atpdGs-vwyaslagnaiaridp~~~~a-------ev~p~P~~~~~gsRriwsdpig-~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 194 ICATPDGS-VWYASLAGNAIARIDPFAGHA-------EVVPQPNALKAGSRRIWSDPIG-RAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred eEECCCCc-EEEEeccccceEEcccccCCc-------ceecCCCcccccccccccCccC-cEEEeccCCceeeEeCcccc
Confidence 88899885 556655666777777665521 1111111212334455566777 77777777788888887765
Q ss_pred CceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 372 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 372 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
.. ..+.+.+....-.++.....++ +-.+--..|.|.-+|-++
T Consensus 265 sW-~eypLPgs~arpys~rVD~~gr-VW~sea~agai~rfdpet 306 (353)
T COG4257 265 SW-IEYPLPGSKARPYSMRVDRHGR-VWLSEADAGAIGRFDPET 306 (353)
T ss_pred cc-eeeeCCCCCCCcceeeeccCCc-EEeeccccCceeecCccc
Confidence 53 3344555444555666666665 344344445566666544
No 432
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.58 E-value=6.5 Score=34.21 Aligned_cols=153 Identities=13% Similarity=0.111 Sum_probs=95.1
Q ss_pred ccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEccc--CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC
Q 013827 200 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH--TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 277 (436)
Q Consensus 200 ~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 277 (436)
.+-+..+.++.+ +...+..+.-++|.|+.+......+... .+.-.++..+ | ++...+..|.-+.+.|+.+..
T Consensus 86 ~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--G-n~aYVadlddgfLivdvsdps 159 (370)
T COG5276 86 RDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--G-NYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--C-CEEEEeeccCcEEEEECCCCC
Confidence 456777888755 6777777788999999876544333211 1334444444 4 677777777778899998877
Q ss_pred CccceEee---eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccC-CCeEEEEecCCCCCE
Q 013827 278 HSGFKWAV---AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNL 353 (436)
Q Consensus 278 ~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~ 353 (436)
.+...-.. ......++.+- +....+..|+-+.+.|+.... .+...-.-.. ..+.++..+++. .+
T Consensus 160 sP~lagrya~~~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp~--------sPvli~~~n~g~g~~sv~vsdnr-~y 227 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAISG---NYAYVAWRDGGLTIVDVSNPH--------SPVLIGSYNTGPGTYSVSVSDNR-AY 227 (370)
T ss_pred CceeeeeeccCCCCceeEEEec---CeEEEEEeCCCeEEEEccCCC--------CCeEEEEEecCCceEEEEecCCe-eE
Confidence 66533221 22234566653 567778889999999998873 3332222222 367888888754 44
Q ss_pred EEEEeCCCcEEEEECCCCC
Q 013827 354 LATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 354 l~~~~~d~~i~iwd~~~~~ 372 (436)
++.. +--+.+-|..+.+
T Consensus 228 ~vvy--~egvlivd~s~~s 244 (370)
T COG5276 228 LVVY--DEGVLIVDVSGPS 244 (370)
T ss_pred EEEc--ccceEEEecCCCC
Confidence 4433 2335566665544
No 433
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.20 E-value=9.6 Score=35.25 Aligned_cols=62 Identities=10% Similarity=0.165 Sum_probs=36.5
Q ss_pred ccceeEEEecCCCCcEEEEEeC------------------CCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEE
Q 013827 200 TDSVLGLAWNKEFRNILASASA------------------DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLS 261 (436)
Q Consensus 200 ~~~v~~~~~~~~~~~~l~s~~~------------------dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 261 (436)
......++|.|+|.-++..++. .|.|.-++..+++....-.++ .....++|+++| .++++
T Consensus 123 ~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G-~l~~t 200 (367)
T TIGR02604 123 HHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWG-DVFFC 200 (367)
T ss_pred cccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCC-CEEEE
Confidence 4557899999997533333321 144566666555432222333 345689999988 77665
Q ss_pred EE
Q 013827 262 GS 263 (436)
Q Consensus 262 ~~ 263 (436)
-.
T Consensus 201 dn 202 (367)
T TIGR02604 201 DN 202 (367)
T ss_pred cc
Confidence 44
No 434
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=92.18 E-value=15 Score=37.56 Aligned_cols=175 Identities=9% Similarity=0.039 Sum_probs=110.1
Q ss_pred cEEEEeCCCCeEEEEEcc----cCCCeEEEEEcCCCCCEEEEEEC----------CCcEEEEecCCCCCccceE--eeeC
Q 013827 224 QVKIWDVAAGKCNLTLEH----HTDKVQAVAWNHHSPQILLSGSF----------DRSVVMKDARISTHSGFKW--AVAA 287 (436)
Q Consensus 224 ~v~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~----------d~~i~~wd~~~~~~~~~~~--~~~~ 287 (436)
.++++|-++-+.....+- -...+.++.|..+.+.++++|.. .|.|.++............ ...+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 467777666554433321 11245556688775477777753 4778888877633333222 3345
Q ss_pred CeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 013827 288 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 367 (436)
Q Consensus 288 ~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd 367 (436)
.+.++..-. | ++ .++-+..|++|+..+. +.++.-..+..++..+...-.+ ..+++|.--+++.+-.
T Consensus 831 av~aL~~fn-g-kl--lA~In~~vrLye~t~~---------~eLr~e~~~~~~~~aL~l~v~g-deI~VgDlm~Sitll~ 896 (1096)
T KOG1897|consen 831 AVYALVEFN-G-KL--LAGINQSVRLYEWTTE---------RELRIECNISNPIIALDLQVKG-DEIAVGDLMRSITLLQ 896 (1096)
T ss_pred ceeehhhhC-C-eE--EEecCcEEEEEEcccc---------ceehhhhcccCCeEEEEEEecC-cEEEEeeccceEEEEE
Confidence 555554332 2 33 3345678999999876 4455556677888888888877 8999999988887765
Q ss_pred CCCCCc-eeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 368 LSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 368 ~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
.+..+- ........+...++++.+-.+.. ++.+..+|.+.+-...
T Consensus 897 y~~~eg~f~evArD~~p~Wmtaveil~~d~--ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 897 YKGDEGNFEEVARDYNPNWMTAVEILDDDT--YLGAENSGNLFTVRKD 942 (1096)
T ss_pred EeccCCceEEeehhhCccceeeEEEecCce--EEeecccccEEEEEec
Confidence 554431 12233345667888888887775 4446777887776544
No 435
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.87 E-value=7.7 Score=33.45 Aligned_cols=200 Identities=10% Similarity=0.053 Sum_probs=119.8
Q ss_pred cceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc
Q 013827 201 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG 280 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 280 (436)
..-..++-.||| ..-+++...+.|--.|..+++....--+.......+..-|++ ..-++-+.. .|.-.|-++.....
T Consensus 62 ~ap~dvapapdG-~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg-~~Witd~~~-aI~R~dpkt~evt~ 138 (353)
T COG4257 62 SAPFDVAPAPDG-AVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDG-SAWITDTGL-AIGRLDPKTLEVTR 138 (353)
T ss_pred CCccccccCCCC-ceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCC-CeeEecCcc-eeEEecCcccceEE
Confidence 445677888987 478888888889889999998766655566667788888998 444433222 44445554443322
Q ss_pred ceE---eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec-cCCCeEEEEecCCCCCEEEE
Q 013827 281 FKW---AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLAT 356 (436)
Q Consensus 281 ~~~---~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~ 356 (436)
... ..........|++.| ++.+++... .---.|-.. ..+..+.. .......|+..|+| .+-++
T Consensus 139 f~lp~~~a~~nlet~vfD~~G-~lWFt~q~G-~yGrLdPa~----------~~i~vfpaPqG~gpyGi~atpdG-svwya 205 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWG-NLWFTGQIG-AYGRLDPAR----------NVISVFPAPQGGGPYGICATPDG-SVWYA 205 (353)
T ss_pred eecccccCCCcccceeeCCCc-cEEEeeccc-cceecCccc----------CceeeeccCCCCCCcceEECCCC-cEEEE
Confidence 211 234567888999987 577776421 110011111 11222222 22345678889998 56666
Q ss_pred EeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 357 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 357 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
.-.++.|...|..+.....+.........-..+--+|.|+ +-++....+.+..||-....
T Consensus 206 slagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 206 SLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred eccccceEEcccccCCcceecCCCcccccccccccCccCc-EEEeccCCceeeEeCccccc
Confidence 5566677777776664333322233233445566677787 57777777788888876554
No 436
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.82 E-value=9.8 Score=37.63 Aligned_cols=179 Identities=10% Similarity=0.094 Sum_probs=90.8
Q ss_pred CcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccce---EeeeCCeeEEEeCCCCC
Q 013827 223 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK---WAVAADVESLAWDPHAE 299 (436)
Q Consensus 223 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~~~~~i~~~~~~~~~~ 299 (436)
-.|+|+++. |+.+..+.-....+-.+.|+.+. .|+....+|++++|++-........ ......|..+.+..+|
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G- 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE--ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG- 139 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCc--eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc-
Confidence 468888864 55555554334478899999876 5777899999999998654433211 1223345555554434
Q ss_pred cEEEEEeCCCcEEEE-eCCCCCCCCCCCCCcccEEEec---cCCCeEEEEecCC-C-CCEEEEEe-CCCcEEEEECCCCC
Q 013827 300 HSFVVSLEDGTIKGF-DIRTAKSDPDSTSQQSSFTLHA---HDKAVCTISYNPL-V-PNLLATGS-TDKMVKLWDLSNNQ 372 (436)
Q Consensus 300 ~~~~~~~~dg~i~i~-d~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~p~-~-~~~l~~~~-~d~~i~iwd~~~~~ 372 (436)
+++-..+|.+.+- +..... ...+.. ...+-+|-...++ . ...++-.. ..+ ..++......
T Consensus 140 --Vavlt~~g~v~~i~~~~~~~----------~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~ 206 (829)
T KOG2280|consen 140 --VAVLTVSGQVILINGVEEPK----------LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR 206 (829)
T ss_pred --eEEEecCCcEEEEcCCCcch----------hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc
Confidence 4444445554433 332211 111111 0111111111111 1 01111111 111 1111122111
Q ss_pred ceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccc
Q 013827 373 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 420 (436)
Q Consensus 373 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (436)
. ....+....+.+..+..||++++ |+--..+|.|.+-++...+..-
T Consensus 207 ~-q~~~~~~~~~~~~ki~VS~n~~~-laLyt~~G~i~~vs~D~~~~lc 252 (829)
T KOG2280|consen 207 V-QLHALSWPNSSVVKISVSPNRRF-LALYTETGKIWVVSIDLSQILC 252 (829)
T ss_pred c-cccccCCCCceEEEEEEcCCcce-EEEEecCCcEEEEecchhhhhh
Confidence 1 11222222346888999999996 8888899999988877665543
No 437
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.62 E-value=11 Score=34.82 Aligned_cols=150 Identities=7% Similarity=0.010 Sum_probs=72.6
Q ss_pred CCeEEEEEcCCCCCEEEEEE-----------CCC-cEEEEecCCCC-Cc---cceEeeeCCeeEEEeCCCCCcEEEEEeC
Q 013827 244 DKVQAVAWNHHSPQILLSGS-----------FDR-SVVMKDARIST-HS---GFKWAVAADVESLAWDPHAEHSFVVSLE 307 (436)
Q Consensus 244 ~~v~~~~~~~~~~~~l~s~~-----------~d~-~i~~wd~~~~~-~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 307 (436)
.....|+|.++| +++++-. ..+ .|.+++-.... .. ..+...-.....+++.+++ +++ +..
T Consensus 14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV-~~~ 89 (367)
T TIGR02604 14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYV-ATP 89 (367)
T ss_pred CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEE-eCC
Confidence 345678888888 6655542 223 66666543322 11 1111222346788888865 444 444
Q ss_pred CCcEEEEeCCCCCCCCCCCCCcccEEEec----cCCCeEEEEecCCCCCEEEEEeCC-------------------CcEE
Q 013827 308 DGTIKGFDIRTAKSDPDSTSQQSSFTLHA----HDKAVCTISYNPLVPNLLATGSTD-------------------KMVK 364 (436)
Q Consensus 308 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~~l~~~~~d-------------------~~i~ 364 (436)
....++.|......... ........+.. +......++|.|+| .+.++-+.. +.|.
T Consensus 90 ~~i~~~~d~~gdg~ad~-~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 90 PDILFLRDKDGDDKADG-EREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred CeEEEEeCCCCCCCCCC-ccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEE
Confidence 43333334432210000 00011111221 23457789999998 554433311 3455
Q ss_pred EEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEe
Q 013827 365 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG 403 (436)
Q Consensus 365 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 403 (436)
-++..+.+.. + ...++ .....++|+|+|. ++++-.
T Consensus 168 r~~pdg~~~e-~-~a~G~-rnp~Gl~~d~~G~-l~~tdn 202 (367)
T TIGR02604 168 RYNPDGGKLR-V-VAHGF-QNPYGHSVDSWGD-VFFCDN 202 (367)
T ss_pred EEecCCCeEE-E-EecCc-CCCccceECCCCC-EEEEcc
Confidence 5555544421 1 12232 2456899999998 465433
No 438
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.52 E-value=3.1 Score=39.04 Aligned_cols=29 Identities=7% Similarity=-0.202 Sum_probs=21.6
Q ss_pred ccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 200 TDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 200 ~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
.-.|..+..++.|. .++-++.+|.+.++=
T Consensus 103 ~feV~~vl~s~~GS-~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGS-HVALIGIKGLMVMEL 131 (741)
T ss_pred eEEEEEEEecCCCc-eEEEecCCeeEEEEc
Confidence 45688888999985 777777788666553
No 439
>PLN02153 epithiospecifier protein
Probab=91.43 E-value=11 Score=34.40 Aligned_cols=54 Identities=11% Similarity=0.135 Sum_probs=28.7
Q ss_pred CcEEEEECCCCCceeEEee---CCCCCcEEEEEEcCCCCcEEEEEeCC--------------CcEEEEeCCCCc
Q 013827 361 KMVKLWDLSNNQPSCIASR---NPKAGAVFSVAFSEDSPFVLAIGGSK--------------GKLEIWDTLSDA 417 (436)
Q Consensus 361 ~~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d--------------g~i~iwd~~~~~ 417 (436)
..+.+||..+.+...+... +........+.+ ++. +++.|+.. ..+..||+.+.+
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVV--GKY-IIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEEE--CCE-EEEECcccCCccccccccccccccEEEEEcCccE
Confidence 4588999988775443321 111111222222 344 67777752 257788876553
No 440
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.34 E-value=3.4 Score=34.87 Aligned_cols=85 Identities=9% Similarity=0.004 Sum_probs=54.7
Q ss_pred eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE-----eccCCCeEEEEecCCCCCEEEEEeCC
Q 013827 286 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-----HAHDKAVCTISYNPLVPNLLATGSTD 360 (436)
Q Consensus 286 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~~l~~~~~d 360 (436)
+.++..+... + .++++-+.+|.+++||+.+.+.........++... ......|..+.++.+| .-+++-+ +
T Consensus 12 gs~~~~l~~~--~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-n 86 (219)
T PF07569_consen 12 GSPVSFLECN--G-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-N 86 (219)
T ss_pred CCceEEEEeC--C-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-C
Confidence 4444444433 3 57999999999999999998654432111111111 0355678889999877 6666554 5
Q ss_pred CcEEEEECCCCCcee
Q 013827 361 KMVKLWDLSNNQPSC 375 (436)
Q Consensus 361 ~~i~iwd~~~~~~~~ 375 (436)
|..+.|+..-.....
T Consensus 87 g~~y~y~~~L~~W~~ 101 (219)
T PF07569_consen 87 GDSYSYSPDLGCWIR 101 (219)
T ss_pred CCEEEeccccceeEE
Confidence 788999887765433
No 441
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.08 E-value=20 Score=36.70 Aligned_cols=205 Identities=14% Similarity=0.125 Sum_probs=108.2
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcccCCC--------eEEEEEcCC---------------CCCEEEEEECCCcEEEE
Q 013827 215 ILASASADKQVKIWDVAAGKCNLTLEHHTDK--------VQAVAWNHH---------------SPQILLSGSFDRSVVMK 271 (436)
Q Consensus 215 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~--------v~~~~~~~~---------------~~~~l~s~~~d~~i~~w 271 (436)
.|+.++.++.|.-.|..+|+.+..+...... ...+.+... ....++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 6777888899999999999888777532210 122333211 11477888899999999
Q ss_pred ecCCCCCccceEeeeCCe-------------eEEEeCC--CCCcEEEEEeC----------CCcEEEEeCCCCCCCCCCC
Q 013827 272 DARISTHSGFKWAVAADV-------------ESLAWDP--HAEHSFVVSLE----------DGTIKGFDIRTAKSDPDST 326 (436)
Q Consensus 272 d~~~~~~~~~~~~~~~~i-------------~~~~~~~--~~~~~~~~~~~----------dg~i~i~d~~~~~~~~~~~ 326 (436)
|.++++....+ ...+.+ ..+.-.| .+ ..+++|+. +|.|+-+|.++++..-...
T Consensus 276 DA~TGk~~W~f-g~~G~vdl~~~~g~~~~g~~~~ts~P~V~~-g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 276 DADTGKLCEDF-GNNGTVDLTAGMGTTPPGYYYPTSPPLVAG-TTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred ECCCCCEEEEe-cCCCceeeecccCcCCCcccccccCCEEEC-CEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99888765321 111111 0111111 02 34555542 6889999999985321100
Q ss_pred CCcc--------cEEEeccCCCe-EEEEecCCCCCEEEEEe------------------CCCcEEEEECCCCCceeEEee
Q 013827 327 SQQS--------SFTLHAHDKAV-CTISYNPLVPNLLATGS------------------TDKMVKLWDLSNNQPSCIASR 379 (436)
Q Consensus 327 ~~~~--------~~~~~~~~~~v-~~~~~~p~~~~~l~~~~------------------~d~~i~iwd~~~~~~~~~~~~ 379 (436)
...+ -.....-...+ ..+++.|.. .+++.+. ..+.|.-.|.++++..-.+..
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~-glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKL-GLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcCCC-CeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 0000 00000000111 234455543 3333321 124566677888874333332
Q ss_pred CCCCC-------cEEEEEEcC-CCC--cEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 380 NPKAG-------AVFSVAFSE-DSP--FVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 380 ~~~~~-------~v~~~~~~~-~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
..|.- ...-+.+.. +|+ -+++.++.+|.+.+.|..+++.+...
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 22210 111122222 442 25888999999999999999988653
No 442
>PLN02153 epithiospecifier protein
Probab=90.76 E-value=13 Score=33.97 Aligned_cols=22 Identities=9% Similarity=0.173 Sum_probs=14.6
Q ss_pred cEEEEEeCC-----CcEEEEeCCCCeE
Q 013827 214 NILASASAD-----KQVKIWDVAAGKC 235 (436)
Q Consensus 214 ~~l~s~~~d-----g~v~vwd~~~~~~ 235 (436)
.+++.|+.+ ..+.+||+.+.+-
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t~~W 113 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVKNEW 113 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCCCEE
Confidence 466677653 2578899887654
No 443
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.55 E-value=1.3 Score=37.41 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=49.6
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCccccccccc-------CcccceeEEEecCCC
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKG-------SHTDSVLGLAWNKEF 212 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~ 212 (436)
..++++|++-+.+|.+++||+.+.+...+.. .+...+. .....|..+.++.+|
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~--------------------Si~pll~~~~~~~~~~~~~i~~~~lt~~G 78 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPV--------------------SIAPLLNSSPVSDKSSSPNITSCSLTSNG 78 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCc--------------------cHHHHhcccccccCCCCCcEEEEEEcCCC
Confidence 3478899999999999999999877654320 0111111 456778999999887
Q ss_pred CcEEEEEeCCCcEEEEeCCCCe
Q 013827 213 RNILASASADKQVKIWDVAAGK 234 (436)
Q Consensus 213 ~~~l~s~~~dg~v~vwd~~~~~ 234 (436)
. -+++-+ +|....|+..-+.
T Consensus 79 ~-PiV~ls-ng~~y~y~~~L~~ 98 (219)
T PF07569_consen 79 V-PIVTLS-NGDSYSYSPDLGC 98 (219)
T ss_pred C-EEEEEe-CCCEEEeccccce
Confidence 4 444444 5788999865443
No 444
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.54 E-value=12 Score=35.37 Aligned_cols=79 Identities=10% Similarity=0.082 Sum_probs=50.3
Q ss_pred CeEEEEecCCCCCEEEEEeCCCcEEEEE---------CCCCCcee----------EEeeCCCCCcEEEEEEcCCC--CcE
Q 013827 340 AVCTISYNPLVPNLLATGSTDKMVKLWD---------LSNNQPSC----------IASRNPKAGAVFSVAFSEDS--PFV 398 (436)
Q Consensus 340 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd---------~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~--~~~ 398 (436)
.|..+..++.| ..++-.+.+|.+.++= +.++++.. ++....| -.+...+|+|+. ..-
T Consensus 105 eV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~-ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 105 EVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTS-LTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCc-eeeeeccccCCccCCce
Confidence 47788889988 6777777777655542 12232211 1111111 246778999986 223
Q ss_pred EEEEeCCCcEEEEeCCCCcccc
Q 013827 399 LAIGGSKGKLEIWDTLSDAGIS 420 (436)
Q Consensus 399 l~s~~~dg~i~iwd~~~~~~~~ 420 (436)
|..-++|..|++||+.....+.
T Consensus 183 L~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEEEecCcEEEEEecCCcchhh
Confidence 6667889999999998877663
No 445
>PLN02193 nitrile-specifier protein
Probab=90.53 E-value=13 Score=35.65 Aligned_cols=63 Identities=13% Similarity=0.098 Sum_probs=35.2
Q ss_pred CEEEEEeCC----CcEEEEECCCCCceeEEee---CCCCCcEEEEEEcCCCCcEEEEEeCC--------------CcEEE
Q 013827 352 NLLATGSTD----KMVKLWDLSNNQPSCIASR---NPKAGAVFSVAFSEDSPFVLAIGGSK--------------GKLEI 410 (436)
Q Consensus 352 ~~l~~~~~d----~~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d--------------g~i~i 410 (436)
.+++.++.+ ..+.+||+.+.+...+... +.......++.+ +++ +++.|+.. ..+.+
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~~~ndv~~ 406 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--GKH-IVIFGGEIAMDPLAHVGPGQLTDGTFA 406 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE--CCE-EEEECCccCCccccccCccceeccEEE
Confidence 566666654 4589999998775444322 111111222222 344 67777753 24788
Q ss_pred EeCCCCc
Q 013827 411 WDTLSDA 417 (436)
Q Consensus 411 wd~~~~~ 417 (436)
||+.+.+
T Consensus 407 ~D~~t~~ 413 (470)
T PLN02193 407 LDTETLQ 413 (470)
T ss_pred EEcCcCE
Confidence 8887654
No 446
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.51 E-value=11 Score=32.85 Aligned_cols=157 Identities=12% Similarity=0.073 Sum_probs=99.6
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeee--CCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCC
Q 013827 243 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA--ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 320 (436)
Q Consensus 243 ~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 320 (436)
.+-+..+.++. .+...+..+.-+++.|+.++..+......+ +-...+..+ | ++..++.-|.-+.++|+.+..
T Consensus 86 ~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--G-n~aYVadlddgfLivdvsdps 159 (370)
T COG5276 86 RDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--G-NYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--C-CEEEEeeccCcEEEEECCCCC
Confidence 45566777774 567777788889999999888776443333 334444443 4 577777767677889998774
Q ss_pred CCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEE
Q 013827 321 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLA 400 (436)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 400 (436)
.+ +..............++.+- ++-..+..|+-+.+-|+.......+.....-...+.++..+++..+ ++
T Consensus 160 sP------~lagrya~~~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y-~v 229 (370)
T COG5276 160 SP------QLAGRYALPGGDTHDVAISG---NYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAY-LV 229 (370)
T ss_pred Cc------eeeeeeccCCCCceeEEEec---CeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeE-EE
Confidence 21 22233333344446677773 6777778899999999988654333333333337888888888753 33
Q ss_pred EEeCCCcEEEEeCCCCc
Q 013827 401 IGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 401 s~~~dg~i~iwd~~~~~ 417 (436)
-. +.-+.+-|....+
T Consensus 230 -vy-~egvlivd~s~~s 244 (370)
T COG5276 230 -VY-DEGVLIVDVSGPS 244 (370)
T ss_pred -Ec-ccceEEEecCCCC
Confidence 22 3346666665544
No 447
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.43 E-value=6.3 Score=41.48 Aligned_cols=163 Identities=12% Similarity=0.158 Sum_probs=92.7
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEe--------CCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 247 QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW--------DPHAEHSFVVSLEDGTIKGFDIRT 318 (436)
Q Consensus 247 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~~~~~~~~dg~i~i~d~~~ 318 (436)
..+-+-|.=++ +-.+-|+.+.+|+..+........+....|..|.. .|.-.++++.+ .--.|.++-+..
T Consensus 82 ~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva-T~~ei~ilgV~~ 158 (1311)
T KOG1900|consen 82 TDMGIFPEIGR--AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA-TPVEIVILGVSF 158 (1311)
T ss_pred eeeccchhhcc--eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEec-ccceEEEEEEEe
Confidence 34444454323 33456899999999986665555555555555543 22222334443 334455555443
Q ss_pred CCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC----CC-------C-----------ceeE
Q 013827 319 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS----NN-------Q-----------PSCI 376 (436)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~----~~-------~-----------~~~~ 376 (436)
...............+......|+++....+| +.+.+|- ||. +|.+. .+ + ...+
T Consensus 159 ~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nG-RIF~~G~-dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~ 234 (1311)
T KOG1900|consen 159 DEFTGELSIFNTSFKISVDGVSVNCITYTENG-RIFFAGR-DGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSL 234 (1311)
T ss_pred ccccCcccccccceeeecCCceEEEEEeccCC-cEEEeec-CCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhh
Confidence 32221111111123344446678899977777 6666655 443 44331 10 0 0012
Q ss_pred EeeC-CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 377 ASRN-PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 377 ~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
..+. .+..+|..+....... ++.+-+..|+|.+|++....
T Consensus 235 ~~~~~~~~dpI~qi~ID~SR~-IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 235 LSVPGSSKDPIRQITIDNSRN-ILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred hcCCCCCCCcceeeEeccccc-eeeeeccCceEEEEEccCCC
Confidence 2233 5677999999987776 78889999999999998743
No 448
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.34 E-value=15 Score=34.20 Aligned_cols=153 Identities=10% Similarity=0.111 Sum_probs=76.0
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCC
Q 013827 246 VQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS 325 (436)
Q Consensus 246 v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~ 325 (436)
...+..++++ .+++.+.....++-||-....=..........+..+.+.+++. ++++ +..|.+.. ....+....
T Consensus 241 f~~v~~~~dG-~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~-l~l~-g~~G~l~~-S~d~G~~~~-- 314 (398)
T PLN00033 241 FSTVNRSPDG-DYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG-LWLL-TRGGGLYV-SKGTGLTEE-- 314 (398)
T ss_pred eeeEEEcCCC-CEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCC-EEEE-eCCceEEE-ecCCCCccc--
Confidence 3445566666 5555544333333344322110111233355688999988763 4444 45565543 222221000
Q ss_pred CCCcccEEEec--cCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc-eeEEeeCCCCCcEEEEEEcCCCCcEEEEE
Q 013827 326 TSQQSSFTLHA--HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIG 402 (436)
Q Consensus 326 ~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 402 (436)
......... ....+..+.|.+++ .. ++++..|.+.... ..++. ........-...++.+.|.++++ .++ .
T Consensus 315 --~~~f~~~~~~~~~~~l~~v~~~~d~-~~-~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~-~ 387 (398)
T PLN00033 315 --DFDFEEADIKSRGFGILDVGYRSKK-EA-WAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK-GFV-L 387 (398)
T ss_pred --ccceeecccCCCCcceEEEEEcCCC-cE-EEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc-eEE-E
Confidence 001111111 22358889999876 44 4555677666553 33331 11111122345688999988777 355 5
Q ss_pred eCCCcEEEE
Q 013827 403 GSKGKLEIW 411 (436)
Q Consensus 403 ~~dg~i~iw 411 (436)
+.+|.|.-|
T Consensus 388 G~~G~il~~ 396 (398)
T PLN00033 388 GNDGVLLRY 396 (398)
T ss_pred eCCcEEEEe
Confidence 677877655
No 449
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.33 E-value=0.05 Score=53.53 Aligned_cols=70 Identities=11% Similarity=0.111 Sum_probs=46.2
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEE-----------EcCCCCCEEEEEECCCcEEEE
Q 013827 203 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVA-----------WNHHSPQILLSGSFDRSVVMK 271 (436)
Q Consensus 203 v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~~l~s~~~d~~i~~w 271 (436)
|...-|-++ .-++..+-.++.+++.++.+... ..+.+|...+..++ .+||| ..++.++.||.+++|
T Consensus 186 V~wcp~~~~-~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 186 VSWCPIAVN-KVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFY 262 (1283)
T ss_pred eeecccccc-cceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCcccee
Confidence 333333344 34777778888998887764332 33344665555443 58898 899999999999988
Q ss_pred ecCC
Q 013827 272 DARI 275 (436)
Q Consensus 272 d~~~ 275 (436)
.+.-
T Consensus 263 Qiyi 266 (1283)
T KOG1916|consen 263 QIYI 266 (1283)
T ss_pred eeee
Confidence 7653
No 450
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.10 E-value=1.9 Score=24.56 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=21.8
Q ss_pred CCcEEEEEEcCCCCcEEEEEeCC--CcEEEE
Q 013827 383 AGAVFSVAFSEDSPFVLAIGGSK--GKLEIW 411 (436)
Q Consensus 383 ~~~v~~~~~~~~~~~~l~s~~~d--g~i~iw 411 (436)
.+.-....|+|||++++.++..+ |...||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34567889999999877777777 777776
No 451
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.95 E-value=5.7 Score=39.55 Aligned_cols=114 Identities=14% Similarity=0.220 Sum_probs=71.5
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCC-------CCCC----CCCCcccEEEeccCCCeEEEEec--CCCCCEEEEEeCCCcEE
Q 013827 298 AEHSFVVSLEDGTIKGFDIRTAK-------SDPD----STSQQSSFTLHAHDKAVCTISYN--PLVPNLLATGSTDKMVK 364 (436)
Q Consensus 298 ~~~~~~~~~~dg~i~i~d~~~~~-------~~~~----~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~~~~~d~~i~ 364 (436)
+...++++.+||.|.+|....-- .... ....++...+. -...+++++++ ... ++||+++....|.
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~-rlIAVSsNs~~VT 190 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS-RLIAVSSNSQEVT 190 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc-eEEEEecCCceEE
Confidence 34688899999999999763210 0000 00112233333 33478899998 655 8899988888888
Q ss_pred EEECCCCCc-eeEEeeCCCCCcEEEEEEcCCC-----CcEEEEEeCCCcEEEEeC
Q 013827 365 LWDLSNNQP-SCIASRNPKAGAVFSVAFSEDS-----PFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 365 iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~-----~~~l~s~~~dg~i~iwd~ 413 (436)
||-...... .....-..+...|.+++|-++. ...+++++-.|.+.+|++
T Consensus 191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 886654211 1111111245578899998754 114777888999999888
No 452
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.84 E-value=15 Score=33.36 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=38.5
Q ss_pred CCeeEEEeCCCC------CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEE-EeccCCCeEEEEecCCCCCEEEEEeC
Q 013827 287 ADVESLAWDPHA------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT-LHAHDKAVCTISYNPLVPNLLATGST 359 (436)
Q Consensus 287 ~~i~~~~~~~~~------~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~ 359 (436)
..+..+.|.... ..++++....+.|....+..... ...... +......+..+++.||| .++++-..
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~r~~~v~~~pDG-~Lyv~~d~ 325 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGS------VTEEEEFLGGFGGRPRDVAQGPDG-ALYVSDDS 325 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEE------EEEEEEECTTSSS-EEEEEEETTS-EEEEEE-T
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCC------ccceEEccccCCCCceEEEEcCCC-eEEEEECC
Confidence 445666665321 23555555567777777754410 011112 12334478999999998 67777667
Q ss_pred CCcEE
Q 013827 360 DKMVK 364 (436)
Q Consensus 360 d~~i~ 364 (436)
+|.|+
T Consensus 326 ~G~iy 330 (331)
T PF07995_consen 326 DGKIY 330 (331)
T ss_dssp TTTEE
T ss_pred CCeEe
Confidence 88764
No 453
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.58 E-value=2.1 Score=24.65 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=23.9
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcc
Q 013827 210 KEFRNILASASADKQVKIWDVAAGKCNLTLEH 241 (436)
Q Consensus 210 ~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 241 (436)
|+++.++++...+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 45554555566688999999998888777764
No 454
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.26 E-value=3.9 Score=33.06 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=26.5
Q ss_pred cceeEEEecCCC-----CcEEEEEeCCCcEEEEeCCC
Q 013827 201 DSVLGLAWNKEF-----RNILASASADKQVKIWDVAA 232 (436)
Q Consensus 201 ~~v~~~~~~~~~-----~~~l~s~~~dg~v~vwd~~~ 232 (436)
..|..++|||.| +-+||+.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999954 45899999999999998663
No 455
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=89.16 E-value=18 Score=33.28 Aligned_cols=197 Identities=12% Similarity=0.130 Sum_probs=109.4
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEc----CCCCCE-EEEEE-CC---CcEEEEecCCCCCccceE
Q 013827 213 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN----HHSPQI-LLSGS-FD---RSVVMKDARISTHSGFKW 283 (436)
Q Consensus 213 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~-l~s~~-~d---~~i~~wd~~~~~~~~~~~ 283 (436)
..+++....++-+.+||++. +.++.+. .+.++.+..- -.+... |+.++ .+ .+|++|.+..........
T Consensus 68 kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp G-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred cceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 34888888889999999874 5556664 2334433321 123121 33443 32 469999776322111111
Q ss_pred --------eeeCCeeEEEe--CC-CCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCC
Q 013827 284 --------AVAADVESLAW--DP-HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 352 (436)
Q Consensus 284 --------~~~~~i~~~~~--~~-~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 352 (436)
.....+..+++ ++ ++..++++...+|.+..|.+....... .....++.+.. ...+-.+...... .
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~--v~~~lVR~f~~-~sQ~EGCVVDDe~-g 220 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGK--VSATLVREFKV-GSQPEGCVVDDET-G 220 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSS--EEEEEEEEEE--SS-EEEEEEETTT-T
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCc--EeeEEEEEecC-CCcceEEEEeccc-C
Confidence 11123566665 33 355677888899999999886321100 01234555553 3467778888766 7
Q ss_pred EEEEEeCCCcEEEEECCCC---CceeEEeeCC--CCCcEEEEEEcC--CC-CcEEEEEeCCCcEEEEeCCCC
Q 013827 353 LLATGSTDKMVKLWDLSNN---QPSCIASRNP--KAGAVFSVAFSE--DS-PFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 353 ~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~--~~~~v~~~~~~~--~~-~~~l~s~~~dg~i~iwd~~~~ 416 (436)
.|+.+-++.-|+-|+.+.. ....+....+ ....|-.|++-. ++ .|+|++.-.+++..||+....
T Consensus 221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999988888887632 1222322222 344677777753 33 467777777889999998764
No 456
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.12 E-value=3.2 Score=40.86 Aligned_cols=95 Identities=16% Similarity=0.150 Sum_probs=45.7
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCC---CCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecC---CCCc
Q 013827 141 EKGNFMAVGSMEPAIEIWDLDVID---EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK---EFRN 214 (436)
Q Consensus 141 ~~~~~l~~g~~dg~i~vw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~ 214 (436)
++...|+.+..||.+......... .......+.... .. .. ....-... ......-...+..++.++ ++..
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~-~~-~~-l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSS-WL-RS-LSGLFPWS-YRGDNSSSSVAASLAVSSSEINDDT 231 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHH-HH-HC-CTTTS-TT----SSSS---EEEEEE-----ETTT
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCc-hh-hh-hhCcCCcc-cccCCCCCCccceEEEecceeCCCC
Confidence 467788888999999888876522 111000000000 00 00 00000000 000111233455555555 2356
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEE
Q 013827 215 ILASASADKQVKIWDVAAGKCNLTL 239 (436)
Q Consensus 215 ~l~s~~~dg~v~vwd~~~~~~~~~~ 239 (436)
+|++.+.|+.+|+||+.+++++...
T Consensus 232 ~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 232 FLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EEEEEETTSEEEEEETTTTCEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCeEEEEe
Confidence 9999999999999999999986655
No 457
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=89.10 E-value=16 Score=33.10 Aligned_cols=103 Identities=7% Similarity=0.053 Sum_probs=47.7
Q ss_pred cEEEEEeCCC-----cEEEEeCCCCeE---EEEEcccCCCe--EEEEEcCCCCCEEEEEEC-----CCcEEEEecCCCCC
Q 013827 214 NILASASADK-----QVKIWDVAAGKC---NLTLEHHTDKV--QAVAWNHHSPQILLSGSF-----DRSVVMKDARISTH 278 (436)
Q Consensus 214 ~~l~s~~~dg-----~v~vwd~~~~~~---~~~~~~~~~~v--~~~~~~~~~~~~l~s~~~-----d~~i~~wd~~~~~~ 278 (436)
.+++.|+.++ .+..+|+.+.+. ...+..-..+. .+++.. ++ .+++.|+. ...+..||+.+.+=
T Consensus 74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~-~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DG-TLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CC-EEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 4666776543 566777766543 12222111111 122222 33 66666664 23577888775432
Q ss_pred ccce-EeeeCCeeEEEeCCCCCcEEEEEeCCCc----EEEEeCCCC
Q 013827 279 SGFK-WAVAADVESLAWDPHAEHSFVVSLEDGT----IKGFDIRTA 319 (436)
Q Consensus 279 ~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~dg~----i~i~d~~~~ 319 (436)
.... ..........+... +.++++.|+.++. +..||..+.
T Consensus 152 ~~~~~~p~~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eECCCCCCCCCCcceEEEE-CCEEEEEcCCCCccccceEEEecCCC
Confidence 1110 01001111111122 2367777776542 457887765
No 458
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=89.03 E-value=8.3 Score=33.92 Aligned_cols=96 Identities=14% Similarity=0.221 Sum_probs=61.8
Q ss_pred CcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEE------CCCcEEEEecCCCCCccceE----eeeCCeeEE
Q 013827 223 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS------FDRSVVMKDARISTHSGFKW----AVAADVESL 292 (436)
Q Consensus 223 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~----~~~~~i~~~ 292 (436)
..|++||..+.+-...-.+-.+.|++|.|..+. .+++.|. ....+..||+.+..-..... ..++++..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 469999998877655555667899999998655 6777664 35568889887665322111 235778888
Q ss_pred EeCCC-CCcEEEEEe-C--CCcEEEEeCCCC
Q 013827 293 AWDPH-AEHSFVVSL-E--DGTIKGFDIRTA 319 (436)
Q Consensus 293 ~~~~~-~~~~~~~~~-~--dg~i~i~d~~~~ 319 (436)
.+... ..++.+.|. . +..|..||=.+.
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W 125 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSW 125 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCce
Confidence 77543 334554543 2 335677765554
No 459
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.60 E-value=32 Score=35.48 Aligned_cols=135 Identities=12% Similarity=0.161 Sum_probs=77.0
Q ss_pred eeeCCeeEEEeC---CC--CCcEEEEEeCCCcEEEEeCCCC------CCCCCCCCCcccEEEec---cCCCeEEEEecCC
Q 013827 284 AVAADVESLAWD---PH--AEHSFVVSLEDGTIKGFDIRTA------KSDPDSTSQQSSFTLHA---HDKAVCTISYNPL 349 (436)
Q Consensus 284 ~~~~~i~~~~~~---~~--~~~~~~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~~~~~---~~~~v~~~~~~p~ 349 (436)
....+|..|.|. .. ....++..-....+.|+...-. ..........++..+.. ...+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 356778888887 21 1112344444556667762211 11111111233444432 2356789999998
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCc---eeEEeeCCC----------CCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 350 VPNLLATGSTDKMVKLWDLSNNQP---SCIASRNPK----------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 350 ~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~----------~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
....||+....|...||++..... ......... .+.-..+.|.++-..+|+ + ....+.++|+.+.
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv-~-~r~~l~~~d~~~~ 234 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLV-C-NRSKLMLIDFESN 234 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEE-E-cCCceEEEECCCC
Confidence 778999999999999999922110 011111111 123447889888775443 4 4567999999987
Q ss_pred cccc
Q 013827 417 AGIS 420 (436)
Q Consensus 417 ~~~~ 420 (436)
....
T Consensus 235 ~~~~ 238 (765)
T PF10214_consen 235 WQTE 238 (765)
T ss_pred Cccc
Confidence 6643
No 460
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.39 E-value=19 Score=33.58 Aligned_cols=143 Identities=6% Similarity=0.056 Sum_probs=84.2
Q ss_pred CCCcEEEEecCCCC---CccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCC
Q 013827 264 FDRSVVMKDARIST---HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA 340 (436)
Q Consensus 264 ~d~~i~~wd~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (436)
..|.+.-|-+.... .+.......++|.++.|++|. +.+++--.+.+|.+++....+.. .....+-+.....
T Consensus 41 rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~-----l~~~~~ck~k~~~ 114 (657)
T KOG2377|consen 41 RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQ-----LEYTQECKTKNAN 114 (657)
T ss_pred ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchh-----hHHHHHhccCcce
Confidence 34445555544322 222233456789999999987 68999999999999988544210 1122222334456
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEe-CCCcEEEEeCCCC
Q 013827 341 VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSD 416 (436)
Q Consensus 341 v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~ 416 (436)
|....|+.+ .-+|..+..| +-+|.....+. .+.....|.-.|+-..|.++.+.+|.+.+ ..+.+.=+.+.++
T Consensus 115 IlGF~W~~s--~e~A~i~~~G-~e~y~v~pekr-slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 115 ILGFCWTSS--TEIAFITDQG-IEFYQVLPEKR-SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred eEEEEEecC--eeEEEEecCC-eEEEEEchhhh-hhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 888999875 3455544433 66666544321 23334556667888889888875555444 3444444555444
No 461
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=87.86 E-value=22 Score=32.76 Aligned_cols=184 Identities=15% Similarity=0.111 Sum_probs=104.1
Q ss_pred cEEEEeCCCCeEEEEEcc--cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCc-
Q 013827 224 QVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH- 300 (436)
Q Consensus 224 ~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~- 300 (436)
.|.|.| +....+..+.+ ....|..+.|..+- -++++--+-.-+.+.|+..++.+...-..+-+-.+--.+|-|++
T Consensus 407 ~vYilD-e~lnvvGkltGl~~gERIYAvRf~gdv-~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~YLHpigen~ 484 (603)
T COG4880 407 AVYILD-ENLNVVGKLTGLAPGERIYAVRFVGDV-LYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSEYLHPIGENR 484 (603)
T ss_pred eeEEEc-CCCcEEEEEeccCCCceEEEEEEeCce-EEEEEEeccCceEEEEcCCCCCCceeEEEecCCchhhccccCCCc
Confidence 345555 33455556654 45689999998877 67888877788999999998887766555555555556675554
Q ss_pred EEEEEeCCCc--EEEEeCCCCCCCCCCCCCcccEEEeccCC----CeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCce
Q 013827 301 SFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDK----AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS 374 (436)
Q Consensus 301 ~~~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~ 374 (436)
++-+|..+|. |.+||+.....+.+ .....+..-=. .-....|.|..+-+++-+...|. ++.+..+.
T Consensus 485 ~lGvG~~~g~vKiSLFdiSdl~~PkE----v~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~gy--if~iedg~-- 556 (603)
T COG4880 485 LLGVGAYQGGVKISLFDISDLAAPKE----VSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGGY--IFFIEDGS-- 556 (603)
T ss_pred EEEeecccCCceEEEEeccCCCCchh----hhheehhhhcchhhhccceeecCCcccEEEecccCccE--EEEEecCc--
Confidence 4556666665 56788876643222 11111110000 11234455554334444555555 44444442
Q ss_pred eEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 375 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 375 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
.+.....|...+...-|..|- +...|+. .+.++|-.+.+.+.+
T Consensus 557 kl~k~~e~k~na~RA~fi~dy--lY~vg~~--ev~~ldenswe~Vge 599 (603)
T COG4880 557 KLRKRAERKLNADRAFFIKDY--LYLVGGN--EVWKLDENSWEVVGE 599 (603)
T ss_pred eeeehhhhcccceeeEEecce--EEEeccc--eeEEeccchHhhhhh
Confidence 233444555555555666654 3333432 467777666666543
No 462
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.62 E-value=21 Score=32.25 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=15.5
Q ss_pred CEEEEEeCCC----cEEEEECCCCCce
Q 013827 352 NLLATGSTDK----MVKLWDLSNNQPS 374 (436)
Q Consensus 352 ~~l~~~~~d~----~i~iwd~~~~~~~ 374 (436)
.+.+.|+.++ .+.+||..+.+..
T Consensus 173 ~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 173 ELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred EEEEEcCCCCccccceEEEecCCCeeE
Confidence 6777777653 3568898887643
No 463
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.40 E-value=15 Score=38.81 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=26.3
Q ss_pred cccceeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 199 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 232 (436)
Q Consensus 199 h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~ 232 (436)
.......++|.|. ..++|.+...|.|+++-...
T Consensus 34 ~~~~~~~~afD~~-q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 34 FPSTPSALAFDPT-QGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCCcceeeccc-cceEEEEEecccEEEecccc
Confidence 3345667889998 57999999999999997553
No 464
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.22 E-value=16 Score=30.27 Aligned_cols=106 Identities=8% Similarity=0.042 Sum_probs=59.7
Q ss_pred CCcEEEEeeC--CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 142 KGNFMAVGSM--EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 142 ~~~~l~~g~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
+|.++.+.+. ...|++||+.+++......... ..-....|+.+ |..+.+-.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~----------------------~~~FgEGit~~-----gd~~y~LT 107 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP----------------------DTVFGEGITKL-----GDYFYQLT 107 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC----------------------ccccccceeec-----cceEEEEE
Confidence 5666666654 3579999998776554321110 00112223222 22334444
Q ss_pred eCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCC
Q 013827 220 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 278 (436)
Q Consensus 220 ~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 278 (436)
-.+|....+|..+.+++..+. ..+.-+.++. ++ ..|+.+....+++.-|..+...
T Consensus 108 w~egvaf~~d~~t~~~lg~~~-y~GeGWgLt~--d~-~~LimsdGsatL~frdP~tfa~ 162 (262)
T COG3823 108 WKEGVAFKYDADTLEELGRFS-YEGEGWGLTS--DD-KNLIMSDGSATLQFRDPKTFAE 162 (262)
T ss_pred eccceeEEEChHHhhhhcccc-cCCcceeeec--CC-cceEeeCCceEEEecCHHHhhh
Confidence 567788889988887777665 3344455544 34 3366666667777777665443
No 465
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=86.12 E-value=44 Score=34.40 Aligned_cols=68 Identities=16% Similarity=0.010 Sum_probs=48.1
Q ss_pred ccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEE----c-----------c----cCCCeEEEEEcCCCCCEEE
Q 013827 200 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL----E-----------H----HTDKVQAVAWNHHSPQILL 260 (436)
Q Consensus 200 ~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~----~-----------~----~~~~v~~~~~~~~~~~~l~ 260 (436)
...|.+++...-+ .+++.+-.||+|.++|-.+.+.+... . + .-.++..++|||.+ ..++
T Consensus 259 ~~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~-c~~v 336 (753)
T PF11635_consen 259 NKRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTM-CSLV 336 (753)
T ss_pred CCeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECccc-ceEE
Confidence 4668888887775 58999999999999998765433222 0 0 11133457899998 7788
Q ss_pred EEECCCcEE
Q 013827 261 SGSFDRSVV 269 (436)
Q Consensus 261 s~~~d~~i~ 269 (436)
.-..+|.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 888888865
No 466
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=85.29 E-value=32 Score=32.71 Aligned_cols=61 Identities=15% Similarity=0.213 Sum_probs=35.9
Q ss_pred CCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC
Q 013827 287 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 350 (436)
Q Consensus 287 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 350 (436)
.....++|.|++ .++++--..|.|++++.......... ..+.............|+++|+.
T Consensus 30 ~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~--~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVF--TLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeee--cCCceeccCCCCceeeEEECCCc
Confidence 457889999987 45555544799999976544211000 00000011136778999999874
No 467
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.95 E-value=21 Score=29.71 Aligned_cols=101 Identities=12% Similarity=0.133 Sum_probs=61.3
Q ss_pred EEEEEeCCCcEEEEeCCC--CeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCC------cEEEE---ecC-CC-CCcc-
Q 013827 215 ILASASADKQVKIWDVAA--GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR------SVVMK---DAR-IS-THSG- 280 (436)
Q Consensus 215 ~l~s~~~dg~v~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~------~i~~w---d~~-~~-~~~~- 280 (436)
.|+.+...+.|.+|++.+ .+....|.. -+.|..+.++..| +++++--.+. .+++| ... .. .+..
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 454445667899999983 345566653 3789999999999 8888865432 34553 222 01 1000
Q ss_pred ---------------------ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 281 ---------------------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 319 (436)
Q Consensus 281 ---------------------~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 319 (436)
...+...++.+++..|-.++++ +|+ ++.+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEE
Confidence 0112244677888888665544 443 457888887654
No 468
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=84.82 E-value=15 Score=36.35 Aligned_cols=23 Identities=9% Similarity=0.216 Sum_probs=21.1
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCC
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDV 162 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~ 162 (436)
+|.++-++.+..||.|++|+...
T Consensus 23 hp~~~s~v~~~~d~si~lfn~~~ 45 (1636)
T KOG3616|consen 23 HPGGQSFVLAHQDGSIILFNFIP 45 (1636)
T ss_pred cCCCceEEEEecCCcEEEEeecc
Confidence 79999999999999999999863
No 469
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.76 E-value=8.5 Score=31.11 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=26.0
Q ss_pred CCeeEEEeCCCC-----CcEEEEEeCCCcEEEEeCCC
Q 013827 287 ADVESLAWDPHA-----EHSFVVSLEDGTIKGFDIRT 318 (436)
Q Consensus 287 ~~i~~~~~~~~~-----~~~~~~~~~dg~i~i~d~~~ 318 (436)
..+..++|+|.| .-+|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999953 34788899999999998664
No 470
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=84.73 E-value=11 Score=37.31 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=45.1
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeC
Q 013827 243 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 316 (436)
Q Consensus 243 ~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~ 316 (436)
...++++.-+|.+ ..++.++.||.|.+|+........ ......+...+.|...| +++.+.|..+.-|.-
T Consensus 14 ~e~~~aiqshp~~-~s~v~~~~d~si~lfn~~~r~qsk-i~~~~~p~~nlv~tnhg---l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGG-QSFVLAHQDGSIILFNFIPRRQSK-ICEEAKPKENLVFTNHG---LVTATSDRRALAWKE 82 (1636)
T ss_pred cceeeeeeecCCC-ceEEEEecCCcEEEEeecccchhh-hhhhcCCccceeeeccc---eEEEeccchhheeec
Confidence 4456778888988 889999999999999976544322 22233444555565543 566666666666643
No 471
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=84.63 E-value=24 Score=31.14 Aligned_cols=92 Identities=14% Similarity=0.214 Sum_probs=55.6
Q ss_pred CcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEe------CCCcEEEEeCCCCCCCCCCCCCcccEEEec---
Q 013827 266 RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--- 336 (436)
Q Consensus 266 ~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--- 336 (436)
..|++||....+=...-....+.|+.+.|..+ .++++.|. ....+..||+.+.. ...+..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~-~~Llv~G~ft~~~~~~~~la~yd~~~~~----------w~~~~~~~s 84 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASN-NQLLVGGNFTLNGTNSSNLATYDFKNQT----------WSSLGGGSS 84 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecC-CEEEEEEeeEECCCCceeEEEEecCCCe----------eeecCCccc
Confidence 45899998765544333346788999999854 35676664 45678899988752 112222
Q ss_pred --cCCCeEEEEecC-CCCCEEEEEe-CCCc--EEEEEC
Q 013827 337 --HDKAVCTISYNP-LVPNLLATGS-TDKM--VKLWDL 368 (436)
Q Consensus 337 --~~~~v~~~~~~p-~~~~~l~~~~-~d~~--i~iwd~ 368 (436)
-.+++..+.+.. +...+.++|. .++. |..||=
T Consensus 85 ~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 85 NSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred ccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcC
Confidence 246777777754 3334555554 3444 555543
No 472
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.11 E-value=23 Score=29.36 Aligned_cols=102 Identities=16% Similarity=0.128 Sum_probs=56.8
Q ss_pred cEEEEEeCCC--cEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeE
Q 013827 214 NILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVES 291 (436)
Q Consensus 214 ~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~ 291 (436)
.++.+.+.-| .|++||+.+++.+.+-.-....+..=-...-+..+.+-.-.+|....+|.++.+... .+..++.-..
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg-~~~y~GeGWg 135 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELG-RFSYEGEGWG 135 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhc-ccccCCccee
Confidence 5677766544 699999999887665432212222111112222344455668888889988776654 2333444444
Q ss_pred EEeCCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 292 LAWDPHAEHSFVVSLEDGTIKGFDIRTA 319 (436)
Q Consensus 292 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 319 (436)
++-. +.+ +..+....+++.-|..+.
T Consensus 136 Lt~d--~~~-LimsdGsatL~frdP~tf 160 (262)
T COG3823 136 LTSD--DKN-LIMSDGSATLQFRDPKTF 160 (262)
T ss_pred eecC--Ccc-eEeeCCceEEEecCHHHh
Confidence 4433 333 555555556666665554
No 473
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=83.66 E-value=31 Score=30.59 Aligned_cols=174 Identities=10% Similarity=0.106 Sum_probs=90.5
Q ss_pred cEEEEeCCCCeEEEEEcc------cCCCeEEEEEcCCCC-----CEEEEEECCCcEEEEecCCCCCccc-----------
Q 013827 224 QVKIWDVAAGKCNLTLEH------HTDKVQAVAWNHHSP-----QILLSGSFDRSVVMKDARISTHSGF----------- 281 (436)
Q Consensus 224 ~v~vwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~-----~~l~s~~~d~~i~~wd~~~~~~~~~----------- 281 (436)
.|.+||+.+++.++++.- ..+.+..+.+..... ...++=+..+.|.++|+.+++....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 577788888887776632 245677787766321 2333334446899999987643221
Q ss_pred --------eEeeeCCeeEEEeCC---CCCcEEEEEeCCCcEEEEeCCC-----CCCCCCCCCCcccEEEeccCCCeEEEE
Q 013827 282 --------KWAVAADVESLAWDP---HAEHSFVVSLEDGTIKGFDIRT-----AKSDPDSTSQQSSFTLHAHDKAVCTIS 345 (436)
Q Consensus 282 --------~~~~~~~i~~~~~~~---~~~~~~~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~ 345 (436)
.......+..++.+| ++ ..+.-..-.+. ++|.+.+ ............+..+-........++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~-r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~ 192 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDG-RWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA 192 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS--EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCc-cEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence 112234466666655 44 33333332221 2333222 111000000011222222224667888
Q ss_pred ecCCCCCEEEEEeCCCcEEEEECCCC----CceeEEeeCCC-CCcEEEEEEcC--CCCcEEEEE
Q 013827 346 YNPLVPNLLATGSTDKMVKLWDLSNN----QPSCIASRNPK-AGAVFSVAFSE--DSPFVLAIG 402 (436)
Q Consensus 346 ~~p~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~-~~~v~~~~~~~--~~~~~l~s~ 402 (436)
++++| .++++--..+.|..|+.... ....+. .... -..+.++.+.+ +|. +.+..
T Consensus 193 ~D~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~-~d~~~l~~pd~~~i~~~~~g~-L~v~s 253 (287)
T PF03022_consen 193 IDPNG-NLYFTDVEQNAIGCWDPDGPYTPENFEILA-QDPRTLQWPDGLKIDPEGDGY-LWVLS 253 (287)
T ss_dssp EETTT-EEEEEECCCTEEEEEETTTSB-GCCEEEEE-E-CC-GSSEEEEEE-T--TS--EEEEE
T ss_pred ECCCC-cEEEecCCCCeEEEEeCCCCcCccchheeE-EcCceeeccceeeeccccCce-EEEEE
Confidence 99987 78888888999999999862 212222 2333 45788999999 876 45544
No 474
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=83.65 E-value=58 Score=33.68 Aligned_cols=171 Identities=14% Similarity=0.124 Sum_probs=95.5
Q ss_pred ccCCCeEEEEEc---C--CCCCEEEEEECCCcEEEEecCCCCC----------c--cceE------eeeCCeeEEEeCCC
Q 013827 241 HHTDKVQAVAWN---H--HSPQILLSGSFDRSVVMKDARISTH----------S--GFKW------AVAADVESLAWDPH 297 (436)
Q Consensus 241 ~~~~~v~~~~~~---~--~~~~~l~s~~~d~~i~~wd~~~~~~----------~--~~~~------~~~~~i~~~~~~~~ 297 (436)
....+|..|+|. . +....++..-....+.|+...-.+. + .... ..+.+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 356788888887 2 1111234444455666666211111 0 0000 12346789999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCccc----EEE-e--ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 013827 298 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS----FTL-H--AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 298 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~~~-~--~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~ 370 (436)
....+|+....|...||++......... ..... ..+ . ........+.|.++. ..|+.++. ..+.++|+.+
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~-~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~-~~lLv~~r-~~l~~~d~~~ 233 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSS-NLRLSRNISGSIIFDPEELSNWKRILWVSDS-NRLLVCNR-SKLMLIDFES 233 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCc-ceeeccCCCccccCCCcccCcceeeEecCCC-CEEEEEcC-CceEEEECCC
Confidence 8889999999999999999222111100 00000 011 0 011334578898876 55555554 4688999988
Q ss_pred CCceeEEeeCCCCCcEEEEEEcCCCC-cEEEEEeCCCcEEEEeCCCC
Q 013827 371 NQPSCIASRNPKAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 371 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~ 416 (436)
...............|..+.-+|... ++++. ....|...++...
T Consensus 234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKSS 278 (765)
T ss_pred CCccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccCC
Confidence 75422122233445788888888732 23332 2356877888773
No 475
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=82.87 E-value=19 Score=27.46 Aligned_cols=113 Identities=11% Similarity=0.143 Sum_probs=66.4
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEecCCCCC-------ccceEeeeCCeeEEEeCC---C-CCcEEEEEeCCCcEEEEeC
Q 013827 248 AVAWNHHSPQILLSGSFDRSVVMKDARISTH-------SGFKWAVAADVESLAWDP---H-AEHSFVVSLEDGTIKGFDI 316 (436)
Q Consensus 248 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------~~~~~~~~~~i~~~~~~~---~-~~~~~~~~~~dg~i~i~d~ 316 (436)
.-+|.... ..|+.++.-|+|.+++...... ..........|++++--+ + +...|+.|+ ...+..||+
T Consensus 3 iGkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 34566666 4688888899999998764432 223455667777776433 2 334555555 557889999
Q ss_pred CCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC--CCEEEEEeCCCcEEEEECCCCC
Q 013827 317 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV--PNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
.... .+ ..+.-...++++.+-.-+ +.-|+..+.+..|.-||....+
T Consensus 81 ~~N~---------d~-Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 81 ENNS---------DL-FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred ccCc---------hh-hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 8762 12 122234566776663321 1334444456677777776554
No 476
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.24 E-value=6.1 Score=38.90 Aligned_cols=69 Identities=17% Similarity=0.103 Sum_probs=40.5
Q ss_pred CEEEEEeCCCcEEEEECCC----CCceeEEeeCC--------------------CCCcEEEEEEcC----CCCcEEEEEe
Q 013827 352 NLLATGSTDKMVKLWDLSN----NQPSCIASRNP--------------------KAGAVFSVAFSE----DSPFVLAIGG 403 (436)
Q Consensus 352 ~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~--------------------~~~~v~~~~~~~----~~~~~l~s~~ 403 (436)
..++.+..||.+....... +.......+.. ..+....++++. +.. ++++.+
T Consensus 159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~tl~ 237 (547)
T PF11715_consen 159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDT-FLFTLS 237 (547)
T ss_dssp SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTT-EEEEEE
T ss_pred CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCC-EEEEEe
Confidence 6777778888887776654 11111111111 123455666666 455 688899
Q ss_pred CCCcEEEEeCCCCccccc
Q 013827 404 SKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 404 ~dg~i~iwd~~~~~~~~~ 421 (436)
.|+.+|+||+.+++++..
T Consensus 238 ~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 238 RDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp TTSEEEEEETTTTCEEEE
T ss_pred CCCeEEEEECCCCeEEEE
Confidence 999999999999999654
No 477
>PLN02193 nitrile-specifier protein
Probab=81.95 E-value=50 Score=31.78 Aligned_cols=101 Identities=8% Similarity=0.067 Sum_probs=48.3
Q ss_pred cEEEEEeCC-----CcEEEEeCCCCeEEEEEcc----cCCCeEEEEEcCCCCCEEEEEECCC-----cEEEEecCCCCCc
Q 013827 214 NILASASAD-----KQVKIWDVAAGKCNLTLEH----HTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARISTHS 279 (436)
Q Consensus 214 ~~l~s~~~d-----g~v~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~ 279 (436)
.+.+.|+.+ ..+..||+.+.+....-.. ....-.++.. -++ .+++.|+.++ .+..||+.+..-.
T Consensus 230 ~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~-~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 230 TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEE-NVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECC-EEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 466666654 3588899887654322111 0011112222 233 6677776543 3566776654311
Q ss_pred cce-----EeeeCCeeEEEeCCCCCcEEEEEeCC----CcEEEEeCCCC
Q 013827 280 GFK-----WAVAADVESLAWDPHAEHSFVVSLED----GTIKGFDIRTA 319 (436)
Q Consensus 280 ~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~d----g~i~i~d~~~~ 319 (436)
... .........+.+ ++ .+++.++.+ ..+.+||+.+.
T Consensus 308 ~~~~~~~~~~~R~~~~~~~~--~g-kiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLEVV--QG-KVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred eCCCCCCCCCCCCCcEEEEE--CC-cEEEEECCCCCccCceEEEECCCC
Confidence 100 000111112222 23 566666654 45888998765
No 478
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.84 E-value=65 Score=34.35 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.6
Q ss_pred cCCCCCEEEEEeCCCcEEEEECCCCC
Q 013827 347 NPLVPNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 347 ~p~~~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
++++ ..++++..||.+..||...++
T Consensus 243 ~~~~-~~~v~~h~Dgs~~fWd~s~g~ 267 (993)
T KOG1983|consen 243 SRDG-SHFVSYHTDGSYAFWDVSSGK 267 (993)
T ss_pred ccCC-ceEEEEEecCCEEeeecCCCc
Confidence 6666 899999999999999998864
No 479
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=81.63 E-value=2.8 Score=24.13 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=24.0
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCccccccc
Q 013827 393 EDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 423 (436)
Q Consensus 393 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (436)
|++++++++...++.|.++|..+++.+.+.-
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 5777777777778999999998887766543
No 480
>PRK13684 Ycf48-like protein; Provisional
Probab=79.92 E-value=48 Score=30.21 Aligned_cols=152 Identities=9% Similarity=0.032 Sum_probs=77.8
Q ss_pred ccceeEEEecCCCCcEEEEEeCCCcEEE-EeCCCCeEEEEE-cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC
Q 013827 200 TDSVLGLAWNKEFRNILASASADKQVKI-WDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 277 (436)
Q Consensus 200 ~~~v~~~~~~~~~~~~l~s~~~dg~v~v-wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 277 (436)
...+.++.+.|++ .++++ +..|.+.. ++ ..++.-..+ ..-...++++.+.+++ ..+++ +..|.+++=....+.
T Consensus 172 ~g~~~~i~~~~~g-~~v~~-g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g-~~~~v-g~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVAV-SSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDG-NLWML-ARGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCCC-eEEEE-eCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCC-CEEEE-ecCCEEEEccCCCCC
Confidence 4578899999985 35544 44565543 22 222222222 3345678999999988 65555 456766542222222
Q ss_pred Cccc-eE---eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCE
Q 013827 278 HSGF-KW---AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL 353 (436)
Q Consensus 278 ~~~~-~~---~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 353 (436)
.-.. .. .....+..+.+.+++ . +++++.+|.+.. ....++. .+.......-......+.|..++ ..
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~-~-~~~~G~~G~v~~-S~d~G~t------W~~~~~~~~~~~~~~~~~~~~~~-~~ 316 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPG-E-IWAGGGNGTLLV-SKDGGKT------WEKDPVGEEVPSNFYKIVFLDPE-KG 316 (334)
T ss_pred ccccccCCccccccceeeEEEcCCC-C-EEEEcCCCeEEE-eCCCCCC------CeECCcCCCCCcceEEEEEeCCC-ce
Confidence 1110 01 112347788888865 3 445556675543 3333211 11111101122356777777654 44
Q ss_pred EEEEeCCCcEEEEE
Q 013827 354 LATGSTDKMVKLWD 367 (436)
Q Consensus 354 l~~~~~d~~i~iwd 367 (436)
++ .+..|.|.-|+
T Consensus 317 ~~-~G~~G~il~~~ 329 (334)
T PRK13684 317 FV-LGQRGVLLRYV 329 (334)
T ss_pred EE-ECCCceEEEec
Confidence 44 55677776654
No 481
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=79.40 E-value=9.1 Score=21.61 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=20.3
Q ss_pred cCCCeEEEEEcCCCCCEEEEEECC--CcEEEE
Q 013827 242 HTDKVQAVAWNHHSPQILLSGSFD--RSVVMK 271 (436)
Q Consensus 242 ~~~~v~~~~~~~~~~~~l~s~~~d--~~i~~w 271 (436)
....-....|+|+|..++.++..+ |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 455677889999996666666666 666555
No 482
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=79.05 E-value=51 Score=30.09 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=20.0
Q ss_pred cEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCC
Q 013827 362 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 405 (436)
Q Consensus 362 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 405 (436)
.+.+||..+.+...+..++... -...+..-+++ +++.|+.+
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~--~~~~~~~~~~~-iyv~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGL--AYGVSVSWNNG-VLLIGGEN 331 (346)
T ss_pred EeeEEEecCCcccccCCCCCCc--eeeEEEEcCCE-EEEEeccC
Confidence 4678888776543333222111 11222333454 67777764
No 483
>PRK13684 Ycf48-like protein; Provisional
Probab=78.12 E-value=54 Score=29.85 Aligned_cols=156 Identities=10% Similarity=0.121 Sum_probs=79.7
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEE-EecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 013827 243 TDKVQAVAWNHHSPQILLSGSFDRSVVM-KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKS 321 (436)
Q Consensus 243 ~~~v~~~~~~~~~~~~l~s~~~d~~i~~-wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~ 321 (436)
...+..+.+.+++ .++ ..+..|.+.. +|-....-..........++.+.+.+++ ..++++ ..|.+.+=....+..
T Consensus 172 ~g~~~~i~~~~~g-~~v-~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g-~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYV-AVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDG-NLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCC-eEE-EEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCC-CEEEEe-cCCEEEEccCCCCCc
Confidence 4578899999987 554 4445565443 2211111111112334568889999876 455544 557664322222211
Q ss_pred CCCCCCCcccEEE-eccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEee-CCCCCcEEEEEEcCCCCcEE
Q 013827 322 DPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR-NPKAGAVFSVAFSEDSPFVL 399 (436)
Q Consensus 322 ~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l 399 (436)
......- ......+..+.+.|++ .+++ ++.+|.+. .....++.-..... ..-....+.+.|..+++ .+
T Consensus 248 ------W~~~~~~~~~~~~~l~~v~~~~~~-~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~-~~ 317 (334)
T PRK13684 248 ------WSKPIIPEITNGYGYLDLAYRTPG-EIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK-GF 317 (334)
T ss_pred ------cccccCCccccccceeeEEEcCCC-CEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCc-eE
Confidence 0101000 0112357788999876 5544 45566554 34444331111111 12223577888887776 35
Q ss_pred EEEeCCCcEEEEeC
Q 013827 400 AIGGSKGKLEIWDT 413 (436)
Q Consensus 400 ~s~~~dg~i~iwd~ 413 (436)
+ .+..|.|--|+-
T Consensus 318 ~-~G~~G~il~~~~ 330 (334)
T PRK13684 318 V-LGQRGVLLRYVG 330 (334)
T ss_pred E-ECCCceEEEecC
Confidence 5 667788877764
No 484
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=77.34 E-value=11 Score=26.30 Aligned_cols=32 Identities=9% Similarity=0.210 Sum_probs=27.2
Q ss_pred CcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 384 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 384 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
...+.+.++|++++++++....+.|++|....
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 35678999999998888888899999998764
No 485
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.99 E-value=69 Score=34.36 Aligned_cols=146 Identities=13% Similarity=0.189 Sum_probs=83.1
Q ss_pred EeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEc--------CCCCCEEEEEECCCcEEEEecCCCC----Ccc----ce
Q 013827 219 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN--------HHSPQILLSGSFDRSVVMKDARIST----HSG----FK 282 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~l~s~~~d~~i~~wd~~~~~----~~~----~~ 282 (436)
.+.|+.+.+|+.+++.....+.+....|..+..- |.=.+.|+.+ .--.|.++-+.-.+ ... ..
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva-T~~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA-TPVEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEec-ccceEEEEEEEeccccCccccccccee
Confidence 3567899999999977777777666666666542 2221233333 33445555432211 111 01
Q ss_pred E-eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCC--CCCCCCCC----------C---CCcccEEEe-ccCCCeEEEE
Q 013827 283 W-AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR--TAKSDPDS----------T---SQQSSFTLH-AHDKAVCTIS 345 (436)
Q Consensus 283 ~-~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~--~~~~~~~~----------~---~~~~~~~~~-~~~~~v~~~~ 345 (436)
. ..+..|+++....+| + ++-++.|| .+|.+. ........ . -...+..+. .+..+|..+.
T Consensus 174 i~~dg~~V~~I~~t~nG-R-IF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENG-R-IFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred eecCCceEEEEEeccCC-c-EEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 1 124557788866655 4 44555566 444432 11110000 0 000022233 5677999999
Q ss_pred ecCCCCCEEEEEeCCCcEEEEECCC
Q 013827 346 YNPLVPNLLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 346 ~~p~~~~~l~~~~~d~~i~iwd~~~ 370 (436)
..... ..+.+-+..++|.+||+..
T Consensus 250 ID~SR-~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 250 IDNSR-NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ecccc-ceeeeeccCceEEEEEccC
Confidence 99877 8999999999999999976
No 486
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=76.95 E-value=63 Score=29.99 Aligned_cols=50 Identities=16% Similarity=0.148 Sum_probs=24.3
Q ss_pred EEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCC------cEEEEeCCC
Q 013827 363 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG------KLEIWDTLS 415 (436)
Q Consensus 363 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg------~i~iwd~~~ 415 (436)
+.+||..+.+...+...+....... +..-++. +++.|+... .|..++...
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~--av~~~~~-iyv~GG~~~~~~~~~~v~~~~~~~ 369 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGV--SVSWNNG-VLLIGGETAGGKAVSDVTLLSWDG 369 (376)
T ss_pred hheEEecCCcccccCcCCCCccceE--EEEeCCE-EEEEcCCCCCCcEeeeEEEEEEcC
Confidence 4578888766433332222111122 2333455 677777542 455555554
No 487
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=76.53 E-value=72 Score=30.42 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=36.1
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc-----ceE--eeeCCeeEEEeCCC
Q 013827 243 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-----FKW--AVAADVESLAWDPH 297 (436)
Q Consensus 243 ~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-----~~~--~~~~~i~~~~~~~~ 297 (436)
-...+.|+|.|++ .+|++--..|.|++++..+..... ... ........++++|+
T Consensus 29 L~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 29 LNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 3467899999998 666655546999999765433211 011 12567899999986
No 488
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=75.39 E-value=70 Score=29.71 Aligned_cols=18 Identities=22% Similarity=0.115 Sum_probs=10.1
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 013827 215 ILASASADKQVKIWDVAA 232 (436)
Q Consensus 215 ~l~s~~~dg~v~vwd~~~ 232 (436)
+++.|..+..+.++|+..
T Consensus 42 yv~gG~~~~~~~~~d~~~ 59 (376)
T PRK14131 42 YVGLGSAGTSWYKLDLNA 59 (376)
T ss_pred EEEeCCCCCeEEEEECCC
Confidence 333344445577888753
No 489
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=74.37 E-value=77 Score=29.71 Aligned_cols=147 Identities=7% Similarity=0.048 Sum_probs=73.0
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeE--EEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc
Q 013827 203 VLGLAWNKEFRNILASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG 280 (436)
Q Consensus 203 v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 280 (436)
...+..+++| .+++.+..-..++-||- +.. ...-......++.+.+.+++ .++++ +..|.+..- ...+..-.
T Consensus 241 f~~v~~~~dG-~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg-~l~l~-g~~G~l~~S-~d~G~~~~ 314 (398)
T PLN00033 241 FSTVNRSPDG-DYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADG-GLWLL-TRGGGLYVS-KGTGLTEE 314 (398)
T ss_pred eeeEEEcCCC-CEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCC-CEEEE-eCCceEEEe-cCCCCccc
Confidence 4455667775 35555544333333442 221 11112234578899999888 55554 456665432 22221100
Q ss_pred --ceEe-----eeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCE
Q 013827 281 --FKWA-----VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL 353 (436)
Q Consensus 281 --~~~~-----~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 353 (436)
.... ....+..+.+.+++ .+++++..|.+..-. ..++. .+.......-......+.|.+++ +.
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~--~~~a~G~~G~v~~s~-D~G~t------W~~~~~~~~~~~~ly~v~f~~~~-~g 384 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKK--EAWAAGGSGILLRST-DGGKS------WKRDKGADNIAANLYSVKFFDDK-KG 384 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCC--cEEEEECCCcEEEeC-CCCcc------eeEccccCCCCcceeEEEEcCCC-ce
Confidence 1111 12348889888765 355666777665543 22210 11111111223567789887765 44
Q ss_pred EEEEeCCCcEEEE
Q 013827 354 LATGSTDKMVKLW 366 (436)
Q Consensus 354 l~~~~~d~~i~iw 366 (436)
++ .+.+|.|.-|
T Consensus 385 ~~-~G~~G~il~~ 396 (398)
T PLN00033 385 FV-LGNDGVLLRY 396 (398)
T ss_pred EE-EeCCcEEEEe
Confidence 44 4566766544
No 490
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=73.09 E-value=97 Score=30.30 Aligned_cols=180 Identities=11% Similarity=0.046 Sum_probs=106.4
Q ss_pred CcEEEEeCCCCeEEEEEcc--cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCc
Q 013827 223 KQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 300 (436)
Q Consensus 223 g~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 300 (436)
+.|.+.| ++.+.+..+.+ ....|.++.|-.+- -+++|=-.-.-+.+.|+..+..+...-..+-+-.+--++|-+++
T Consensus 304 N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~-~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPGfS~YLHP~~e~ 381 (521)
T PF09826_consen 304 NNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDR-AYLVTFRQVDPLFVIDLSDPANPKVLGELKIPGFSDYLHPYDEN 381 (521)
T ss_pred EEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCe-EEEEEEeecCceEEEECCCCCCCceeeEEECccchhceeECCCC
Confidence 3566776 55666666643 46789999999877 67887777677999999998888766666655555556664444
Q ss_pred EEE-EEeCC-----------CcEEEEeCCCCCCCCCCCCCcccEEEec-cC-------CCeEEEEecCCCCCEEEEEeC-
Q 013827 301 SFV-VSLED-----------GTIKGFDIRTAKSDPDSTSQQSSFTLHA-HD-------KAVCTISYNPLVPNLLATGST- 359 (436)
Q Consensus 301 ~~~-~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~-------~~v~~~~~~p~~~~~l~~~~~- 359 (436)
+|+ .|-+. =.|.+||+.....+.. +....- .. ..-.++.|.+.. ++|+.--.
T Consensus 382 ~LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P~e------~~~~~iG~~~s~S~a~~dhkAfl~~~~~-~ll~~Pv~~ 454 (521)
T PF09826_consen 382 HLLGIGKDTDEDEGTGWTQGLKISLFDVSDPANPKE------LDKEVIGDRGSYSEALYDHKAFLFDKEK-NLLAFPVSS 454 (521)
T ss_pred eEEEEcccCcccccccccceeEEEEEecCCCCCccE------eEEEEcCCCCccCccccCceEEEEeCCC-CEEEEEEEE
Confidence 444 44322 2478999988743221 111111 00 112467778766 55543322
Q ss_pred ------CCcEEEEECCC-CCceeEEeeCCCCC-------cEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 360 ------DKMVKLWDLSN-NQPSCIASRNPKAG-------AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 360 ------d~~i~iwd~~~-~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
-..+.++++.. ......... .|.. .+....+..|. |.+.+ ++.|+++|+.+-
T Consensus 455 ~~~~~~~~g~~v~~i~~~~g~~~~g~i-~h~~~~~~~~~~~~R~lyi~d~---lYtvS-~~~i~~~~l~t~ 520 (521)
T PF09826_consen 455 SYGYFNFQGAYVFSIDPEDGFTLKGKI-THPSPDYYYSYQIQRSLYIGDT---LYTVS-DNGIKAYDLNTL 520 (521)
T ss_pred ccCccccceEEEEEEeCCCCeEEEEEE-EccCcccccccceeEEEEECCE---EEEEE-CCEEEEEehHhc
Confidence 23477787773 222222222 2332 36666666553 44444 467999998764
No 491
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=73.01 E-value=13 Score=26.05 Aligned_cols=54 Identities=19% Similarity=0.169 Sum_probs=33.5
Q ss_pred EeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 013827 357 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 357 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 413 (436)
+..+|.+.-||..+++...+.. .-...+.+++++|+.++|++-.....|.-|-+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~---~L~fpNGVals~d~~~vlv~Et~~~Ri~rywl 86 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLD---GLYFPNGVALSPDESFVLVAETGRYRILRYWL 86 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEE---EESSEEEEEE-TTSSEEEEEEGGGTEEEEEES
T ss_pred CCCCcCEEEEECCCCeEEEehh---CCCccCeEEEcCCCCEEEEEeccCceEEEEEE
Confidence 4456788899999887422222 12367899999999987776665555544433
No 492
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=72.75 E-value=33 Score=28.63 Aligned_cols=51 Identities=18% Similarity=0.330 Sum_probs=35.9
Q ss_pred CEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeC
Q 013827 352 NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS 404 (436)
Q Consensus 352 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 404 (436)
..|..+...+.|.+|++..........+.. -+.|..+.++..|.| ++|--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDY-lvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDY-LVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccce-EEEEEe
Confidence 444444667789999999555445555554 368999999999997 555443
No 493
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=72.31 E-value=82 Score=29.15 Aligned_cols=197 Identities=13% Similarity=0.119 Sum_probs=103.5
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcc---cceeEEEecCCCCcE-
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT---DSVLGLAWNKEFRNI- 215 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~- 215 (436)
.|...+++...+++-+.+||++..+. ... -.+.. +-...+.+ .|...
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~Gk~l-q~~--------------------------~~Gr~NNVDvrygf~l--~g~~vD 115 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLDGKEL-QSL--------------------------PVGRPNNVDVRYGFPL--NGKTVD 115 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETTS-EE-EEE---------------------------SS-EEEEEEEEEEEE--TTEEEE
T ss_pred CcccceEEEEeCCCCEEEEcCCCcEE-Eee--------------------------cCCCcceeeeecceec--CCceEE
Confidence 45667788888889999999974322 110 00111 11222233 22222
Q ss_pred EEEEe-CC---CcEEEEeCC--CCeEEEEEcc-------cCCCeEEEEE--cC-CCCCEEEEEECCCcEEEEecCCCCC-
Q 013827 216 LASAS-AD---KQVKIWDVA--AGKCNLTLEH-------HTDKVQAVAW--NH-HSPQILLSGSFDRSVVMKDARISTH- 278 (436)
Q Consensus 216 l~s~~-~d---g~v~vwd~~--~~~~~~~~~~-------~~~~v~~~~~--~~-~~~~~l~s~~~d~~i~~wd~~~~~~- 278 (436)
|+.++ .+ .+|++|.+. ++. +..+.. ....+..+++ ++ ++..+++....+|.+..|.+.....
T Consensus 116 lavas~R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g 194 (381)
T PF02333_consen 116 LAVASDRSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG 194 (381)
T ss_dssp EEEEEE-CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS
T ss_pred EEEEecCcCCCCeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC
Confidence 33443 32 469999775 333 333321 1134666666 33 3545777888999998888753221
Q ss_pred -----ccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec--cCCCeEEEEec--CC
Q 013827 279 -----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYN--PL 349 (436)
Q Consensus 279 -----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~--p~ 349 (436)
....+...+.+..|..+... ..++.+-++.-|.-|+........ ...+....+ ....+-.|+.- ++
T Consensus 195 ~v~~~lVR~f~~~sQ~EGCVVDDe~-g~LYvgEE~~GIW~y~Aep~~~~~----~~~v~~~~g~~l~aDvEGlaly~~~~ 269 (381)
T PF02333_consen 195 KVSATLVREFKVGSQPEGCVVDDET-GRLYVGEEDVGIWRYDAEPEGGND----RTLVASADGDGLVADVEGLALYYGSD 269 (381)
T ss_dssp SEEEEEEEEEE-SS-EEEEEEETTT-TEEEEEETTTEEEEEESSCCC-S------EEEEEBSSSSB-S-EEEEEEEE-CC
T ss_pred cEeeEEEEEecCCCcceEEEEeccc-CCEEEecCccEEEEEecCCCCCCc----ceeeecccccccccCccceEEEecCC
Confidence 12234456778888888755 578889899888888876442111 111212111 23456666653 34
Q ss_pred CCCEEEEEe-CCCcEEEEECCCC
Q 013827 350 VPNLLATGS-TDKMVKLWDLSNN 371 (436)
Q Consensus 350 ~~~~l~~~~-~d~~i~iwd~~~~ 371 (436)
+..+|++.+ .+++..+|+....
T Consensus 270 g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 270 GKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp C-EEEEEEEGGGTEEEEEESSTT
T ss_pred CCeEEEEEcCCCCeEEEEecCCC
Confidence 434555544 4788999998764
No 494
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=72.22 E-value=41 Score=25.67 Aligned_cols=118 Identities=11% Similarity=0.156 Sum_probs=66.6
Q ss_pred EeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecC----CCCCEEEEEeCCCcEEEEEC
Q 013827 293 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP----LVPNLLATGSTDKMVKLWDL 368 (436)
Q Consensus 293 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p----~~~~~l~~~~~d~~i~iwd~ 368 (436)
.|+...+ .|++++.-|+|.|++.......... ....+..+ .-...|++++-.+ ++...|+.|+ ...+..||+
T Consensus 5 kfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 5 KFDGVHP-CLACATTGGKVFIHNPHERGQRTGR-QDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EeCCCce-eEEEEecCCEEEEECCCcccccccc-ccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 4555443 6888888999999987655321111 11223333 3456677775444 2235666665 457899999
Q ss_pred CCCCceeEEeeCCCCCcEEEEEEcC----CCCcEEEEEeCCCcEEEEeCCCCccc
Q 013827 369 SNNQPSCIASRNPKAGAVFSVAFSE----DSPFVLAIGGSKGKLEIWDTLSDAGI 419 (436)
Q Consensus 369 ~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (436)
..... ++..+ -...|+++.+-. +.+ +++ .+.+..|.=||....+..
T Consensus 81 ~~N~d--~Fyke-~~DGvn~i~~g~~~~~~~~-l~i-vGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 81 ENNSD--LFYKE-VPDGVNAIVIGKLGDIPSP-LVI-VGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred ccCch--hhhhh-CccceeEEEEEecCCCCCc-EEE-ECceEEEEEeCCCCcEEE
Confidence 88763 22222 234577776632 233 344 445566777776655543
No 495
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=72.07 E-value=1.3e+02 Score=31.17 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=41.8
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeE-------------EEEEcC--CCCCEEEEEEC----------CCcE
Q 013827 214 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ-------------AVAWNH--HSPQILLSGSF----------DRSV 268 (436)
Q Consensus 214 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~~l~s~~~----------d~~i 268 (436)
..++.++.|+.+.-.|.++|+....+.. .+.|. .+.-.| .+ ..+++|+. +|.|
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~-g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAG-TTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEEC-CEEEEEecccccccccCCCcEE
Confidence 3778888999999999999998876642 11110 011111 12 35566643 6889
Q ss_pred EEEecCCCCCcc
Q 013827 269 VMKDARISTHSG 280 (436)
Q Consensus 269 ~~wd~~~~~~~~ 280 (436)
+-+|.++++..-
T Consensus 339 ~A~Da~TGkl~W 350 (764)
T TIGR03074 339 RAFDVNTGALVW 350 (764)
T ss_pred EEEECCCCcEee
Confidence 999998887653
No 496
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=69.97 E-value=71 Score=27.47 Aligned_cols=140 Identities=11% Similarity=0.032 Sum_probs=67.8
Q ss_pred EEEEeCCCCeEEEEEcc-cCCCeEEEEEcCCCCCEEEEEECC---CcEEEEecCCCCCccce------EeeeCCeeEEEe
Q 013827 225 VKIWDVAAGKCNLTLEH-HTDKVQAVAWNHHSPQILLSGSFD---RSVVMKDARISTHSGFK------WAVAADVESLAW 294 (436)
Q Consensus 225 v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~------~~~~~~i~~~~~ 294 (436)
-.+||+.+++. +.+.. ...-..+-.+.++| +++.+|+.. ..+++++.......... ......=.++..
T Consensus 48 s~~yD~~tn~~-rpl~v~td~FCSgg~~L~dG-~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNTF-RPLTVQTDTFCSGGAFLPDG-RLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEecCCCcE-EeccCCCCCcccCcCCCCCC-CEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 45788888764 23321 22233344677888 888887752 35778776541111101 112222334444
Q ss_pred CCCCCcEEEEEeCC-CcEEEEeCCCCCCCCCCCCCcccEEEe--ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 013827 295 DPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 371 (436)
Q Consensus 295 ~~~~~~~~~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~ 371 (436)
-|+|. .++.|+.. .+..+|.-+....... ....+.... ....---.+...|+| ++++.+..+. .|||..+.
T Consensus 126 L~DG~-vlIvGG~~~~t~E~~P~~~~~~~~~--~~~~l~~~~~~~~~nlYP~~~llPdG-~lFi~an~~s--~i~d~~~n 199 (243)
T PF07250_consen 126 LPDGR-VLIVGGSNNPTYEFWPPKGPGPGPV--TLPFLSQTSDTLPNNLYPFVHLLPDG-NLFIFANRGS--IIYDYKTN 199 (243)
T ss_pred CCCCC-EEEEeCcCCCcccccCCccCCCCce--eeecchhhhccCccccCceEEEcCCC-CEEEEEcCCc--EEEeCCCC
Confidence 56774 66666555 3344444322110000 000000000 011112346677888 8888777654 46688777
Q ss_pred C
Q 013827 372 Q 372 (436)
Q Consensus 372 ~ 372 (436)
+
T Consensus 200 ~ 200 (243)
T PF07250_consen 200 T 200 (243)
T ss_pred e
Confidence 5
No 497
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.70 E-value=1e+02 Score=29.10 Aligned_cols=116 Identities=9% Similarity=0.145 Sum_probs=71.0
Q ss_pred cccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEE----EEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC
Q 013827 199 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN----LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 274 (436)
Q Consensus 199 h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 274 (436)
..++|.++.|++|. +.||.--.|.+|.+.+....+.. .+.+..+..|....|+... -++..+..| +-+|-..
T Consensus 65 d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~--e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST--EIAFITDQG-IEFYQVL 140 (657)
T ss_pred CCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe--eEEEEecCC-eEEEEEc
Confidence 45699999999994 79999999999999997443322 2223345568888998764 344444333 4555443
Q ss_pred CCC-CccceEeeeCCeeEEEeCCCCCcEEEEEe-CCCcEEEEeCCC
Q 013827 275 IST-HSGFKWAVAADVESLAWDPHAEHSFVVSL-EDGTIKGFDIRT 318 (436)
Q Consensus 275 ~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~dg~i~i~d~~~ 318 (436)
..+ .......+...|.-..|.++..-.+++.+ ..+++.=+-+++
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 322 22334456777888888886643333333 333444344433
No 498
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=67.21 E-value=1.2e+02 Score=32.33 Aligned_cols=151 Identities=13% Similarity=0.094 Sum_probs=0.0
Q ss_pred cEEEEeeCC---------CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCc
Q 013827 144 NFMAVGSME---------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN 214 (436)
Q Consensus 144 ~~l~~g~~d---------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 214 (436)
.|||+|..- |.+.|+|+-.--+... +...+.+-.....+...++|..++=-..
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepg---------------kP~t~~KlKel~~eE~KGtVsavceV~G--- 1108 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPG---------------KPFTKNKLKELYIEEQKGTVSAVCEVRG--- 1108 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCC---------------CCcccceeeeeehhhcccceEEEEEecc---
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCC---eeE
Q 013827 215 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD---VES 291 (436)
Q Consensus 215 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~---i~~ 291 (436)
+|+++.. ..|.||+++....+.-..--.-++.-....--. ++|+.|.--..|.+.-................ +.+
T Consensus 1109 ~l~~~~G-qKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vk-nlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s 1186 (1366)
T KOG1896|consen 1109 HLLSSQG-QKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVK-NLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYS 1186 (1366)
T ss_pred EEEEccC-cEEEEEEeccCCcceeeEEeccceeEEehhhhh-hheehhhhhhceEEEEEccCceEEEEeecCCchhhcee
Q ss_pred EEeCCCCCcE-EEEEeCCCcEEEE
Q 013827 292 LAWDPHAEHS-FVVSLEDGTIKGF 314 (436)
Q Consensus 292 ~~~~~~~~~~-~~~~~~dg~i~i~ 314 (436)
+.|--+|.++ ++++..++.|++|
T Consensus 1187 ~EFLVdg~~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1187 TEFLVDGSNLSFLVSDADRNIHVY 1210 (1366)
T ss_pred eeeEEcCCeeEEEEEcCCCcEEEE
No 499
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=67.20 E-value=1.2e+02 Score=28.81 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=24.2
Q ss_pred cEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 385 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 385 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
.|.+++..+..+ ++++...+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~-~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRR-LLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTT-EEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcC-EEEEEeCCCcEEEEEEeC
Confidence 488999988887 688999999999999975
No 500
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=66.34 E-value=17 Score=18.90 Aligned_cols=26 Identities=15% Similarity=0.288 Sum_probs=20.1
Q ss_pred cceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 201 DSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+.|.+++..+. +++.+..-+.+|+|.
T Consensus 2 E~i~aia~g~~---~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDS---WVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCC---EEEEEeCCCeEEecC
Confidence 35788887654 888888889999873
Done!