Query 013827
Match_columns 436
No_of_seqs 683 out of 4156
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 17:51:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gqb_B Methylosome protein 50; 100.0 1.2E-47 4.3E-52 349.1 38.3 303 71-418 28-334 (344)
2 4g56_B MGC81050 protein; prote 100.0 7.1E-47 2.4E-51 346.8 36.3 308 71-423 40-351 (357)
3 1vyh_C Platelet-activating fac 100.0 3.9E-45 1.4E-49 341.8 36.3 286 71-414 106-410 (410)
4 3iz6_a 40S ribosomal protein R 100.0 4.9E-44 1.7E-48 331.1 36.0 299 70-418 63-378 (380)
5 1got_B GT-beta; complex (GTP-b 100.0 2.4E-43 8.2E-48 321.6 39.4 287 70-412 52-340 (340)
6 3ow8_A WD repeat-containing pr 100.0 5.4E-44 1.8E-48 322.8 33.9 290 68-414 27-320 (321)
7 2ynn_A Coatomer subunit beta'; 100.0 5.1E-43 1.7E-47 314.2 35.1 289 71-416 11-303 (304)
8 2pbi_B Guanine nucleotide-bind 100.0 1.8E-42 6.2E-47 317.3 39.2 291 70-412 61-354 (354)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.1E-42 2.4E-46 312.4 36.6 309 71-421 13-341 (345)
10 2pm9_A Protein WEB1, protein t 100.0 2.6E-42 9E-47 323.7 29.2 341 19-416 14-415 (416)
11 1erj_A Transcriptional repress 100.0 2.8E-41 9.5E-46 314.1 35.4 298 71-416 62-390 (393)
12 1nr0_A Actin interacting prote 100.0 8E-41 2.7E-45 328.5 38.4 327 21-418 22-400 (611)
13 4gqb_B Methylosome protein 50; 100.0 2.5E-41 8.7E-46 307.6 31.8 294 19-372 32-333 (344)
14 4ery_A WD repeat-containing pr 100.0 1.6E-40 5.6E-45 299.3 35.6 287 70-414 20-311 (312)
15 2hes_X YDR267CP; beta-propelle 100.0 2.1E-40 7.3E-45 300.7 34.4 305 71-415 12-328 (330)
16 2ynn_A Coatomer subunit beta'; 100.0 2.7E-40 9.2E-45 296.5 34.3 249 127-424 16-268 (304)
17 3frx_A Guanine nucleotide-bind 100.0 4.8E-40 1.6E-44 296.9 35.3 288 70-416 14-318 (319)
18 1nr0_A Actin interacting prote 100.0 4.5E-40 1.5E-44 323.2 37.3 293 72-421 17-361 (611)
19 2ymu_A WD-40 repeat protein; u 100.0 1.9E-40 6.5E-45 324.4 34.4 308 20-412 265-577 (577)
20 2xzm_R RACK1; ribosome, transl 100.0 2E-39 6.7E-44 296.1 37.6 289 70-417 18-342 (343)
21 1vyh_C Platelet-activating fac 100.0 9.3E-40 3.2E-44 305.4 34.5 251 126-425 110-379 (410)
22 3ow8_A WD repeat-containing pr 100.0 1.8E-39 6.2E-44 293.1 34.2 258 125-426 33-290 (321)
23 2ymu_A WD-40 repeat protein; u 100.0 4.6E-39 1.6E-43 314.7 36.7 320 20-425 224-548 (577)
24 1gxr_A ESG1, transducin-like e 100.0 4.5E-38 1.5E-42 286.1 39.9 287 71-414 49-336 (337)
25 3k26_A Polycomb protein EED; W 100.0 3.1E-39 1.1E-43 297.3 30.5 301 70-415 15-366 (366)
26 1r5m_A SIR4-interacting protei 100.0 4.1E-39 1.4E-43 302.5 31.6 348 18-414 46-424 (425)
27 4aez_A CDC20, WD repeat-contai 100.0 2.6E-38 8.9E-43 295.1 36.7 299 71-427 89-392 (401)
28 3i2n_A WD repeat-containing pr 100.0 1E-38 3.6E-43 292.8 32.9 299 70-418 15-356 (357)
29 4g56_B MGC81050 protein; prote 100.0 6.9E-40 2.3E-44 300.4 23.4 296 17-372 42-345 (357)
30 2pm9_A Protein WEB1, protein t 100.0 1.7E-39 5.8E-44 304.6 26.0 299 72-420 11-342 (416)
31 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.6E-39 2.9E-43 292.0 28.7 296 19-373 18-338 (345)
32 1got_B GT-beta; complex (GTP-b 100.0 7.3E-38 2.5E-42 285.3 34.7 250 127-425 58-311 (340)
33 3vl1_A 26S proteasome regulato 100.0 2.5E-38 8.7E-43 297.0 30.1 287 73-417 56-367 (420)
34 1k8k_C P40, ARP2/3 complex 41 100.0 1.9E-38 6.4E-43 292.9 28.2 294 71-420 6-366 (372)
35 1sq9_A Antiviral protein SKI8; 100.0 4.5E-38 1.5E-42 293.1 29.6 291 70-417 13-397 (397)
36 2pm7_B Protein transport prote 100.0 3.8E-37 1.3E-41 275.0 33.9 250 127-415 12-285 (297)
37 3zwl_B Eukaryotic translation 100.0 2.6E-37 9E-42 284.6 33.7 290 70-420 29-351 (369)
38 3vl1_A 26S proteasome regulato 100.0 8.3E-38 2.8E-42 293.5 30.5 318 22-415 61-419 (420)
39 3ei3_B DNA damage-binding prot 100.0 2.9E-37 9.8E-42 286.3 33.6 290 70-415 70-382 (383)
40 1gxr_A ESG1, transducin-like e 100.0 6.5E-37 2.2E-41 278.4 34.7 292 72-420 8-301 (337)
41 4aow_A Guanine nucleotide-bind 100.0 1.3E-36 4.3E-41 277.0 36.1 294 70-417 35-339 (340)
42 1r5m_A SIR4-interacting protei 100.0 3.1E-37 1E-41 289.7 32.9 290 70-417 42-363 (425)
43 3iz6_a 40S ribosomal protein R 100.0 1.6E-38 5.4E-43 294.1 23.8 293 13-372 62-377 (380)
44 2pbi_B Guanine nucleotide-bind 100.0 7E-37 2.4E-41 280.1 34.2 252 127-425 67-325 (354)
45 3odt_A Protein DOA1; ubiquitin 100.0 2.3E-36 7.9E-41 271.9 35.3 286 70-421 15-302 (313)
46 3dwl_C Actin-related protein 2 100.0 2.7E-38 9.1E-43 292.6 22.8 291 72-413 10-377 (377)
47 2j04_B YDR362CP, TAU91; beta p 100.0 3.9E-37 1.3E-41 293.8 31.3 311 72-416 132-518 (524)
48 1erj_A Transcriptional repress 100.0 4.6E-36 1.6E-40 278.9 36.9 270 125-425 65-351 (393)
49 4h5i_A Guanine nucleotide-exch 100.0 1.3E-36 4.5E-41 279.3 32.7 305 74-419 15-347 (365)
50 4gga_A P55CDC, cell division c 100.0 1.7E-35 5.9E-40 277.7 40.6 287 74-421 106-401 (420)
51 3dm0_A Maltose-binding peripla 100.0 2.6E-36 8.8E-41 301.2 36.8 288 70-415 379-693 (694)
52 4e54_B DNA damage-binding prot 100.0 5.7E-37 2E-41 289.0 29.2 291 71-418 117-433 (435)
53 2xyi_A Probable histone-bindin 100.0 1.1E-35 3.9E-40 279.7 36.8 262 124-417 128-412 (430)
54 4a11_B DNA excision repair pro 100.0 5E-36 1.7E-40 279.9 33.7 302 71-421 41-371 (408)
55 2oaj_A Protein SNI1; WD40 repe 100.0 7.5E-37 2.6E-41 311.1 28.7 342 18-417 18-521 (902)
56 3frx_A Guanine nucleotide-bind 100.0 1.1E-35 3.8E-40 268.3 32.9 249 127-422 20-274 (319)
57 4aow_A Guanine nucleotide-bind 100.0 8.5E-37 2.9E-41 278.2 25.3 299 13-372 34-339 (340)
58 4ery_A WD repeat-containing pr 100.0 2.4E-35 8.2E-40 265.5 34.3 249 127-425 26-278 (312)
59 2oaj_A Protein SNI1; WD40 repe 100.0 1.8E-36 6.2E-41 308.3 28.4 378 19-423 100-672 (902)
60 3sfz_A APAF-1, apoptotic pepti 100.0 5.4E-36 1.8E-40 318.0 32.9 335 17-420 615-1039(1249)
61 2xzm_R RACK1; ribosome, transl 100.0 3E-35 1E-39 268.4 33.2 244 140-420 36-290 (343)
62 3mkq_A Coatomer beta'-subunit; 100.0 1.6E-35 5.3E-40 301.3 33.5 290 70-417 10-304 (814)
63 3dw8_B Serine/threonine-protei 100.0 2.3E-35 7.9E-40 279.2 32.0 316 70-414 25-445 (447)
64 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.7E-35 1.6E-39 276.9 33.7 298 31-416 136-443 (445)
65 2hes_X YDR267CP; beta-propelle 100.0 3.9E-35 1.3E-39 266.0 31.7 239 140-417 23-282 (330)
66 4ggc_A P55CDC, cell division c 100.0 8E-34 2.7E-38 256.0 40.0 281 76-417 28-317 (318)
67 1pgu_A Actin interacting prote 100.0 3.5E-35 1.2E-39 289.2 33.4 325 18-415 161-614 (615)
68 3bg1_A Protein SEC13 homolog; 100.0 2.2E-36 7.7E-41 272.5 22.5 249 127-415 16-293 (316)
69 3f3f_A Nucleoporin SEH1; struc 100.0 1.8E-34 6E-39 263.3 33.5 255 127-421 14-343 (351)
70 3sfz_A APAF-1, apoptotic pepti 100.0 1.9E-35 6.7E-40 313.7 30.6 365 18-422 744-1165(1249)
71 3gre_A Serine/threonine-protei 100.0 1.5E-35 5.3E-40 279.6 26.5 298 70-412 60-437 (437)
72 2aq5_A Coronin-1A; WD40 repeat 100.0 6.7E-35 2.3E-39 272.1 29.9 294 75-418 36-345 (402)
73 3jrp_A Fusion protein of prote 100.0 1.3E-34 4.3E-39 267.7 30.8 249 128-416 15-288 (379)
74 3v7d_B Cell division control p 100.0 2.2E-34 7.7E-39 273.8 32.7 287 71-425 119-431 (464)
75 1p22_A F-BOX/WD-repeat protein 100.0 1.1E-34 3.9E-39 273.4 30.1 281 70-421 130-420 (435)
76 2pm7_B Protein transport prote 100.0 1.9E-34 6.6E-39 257.5 29.6 252 70-370 6-285 (297)
77 1pgu_A Actin interacting prote 100.0 8.5E-35 2.9E-39 286.4 29.5 315 18-413 19-364 (615)
78 3v7d_B Cell division control p 100.0 8.8E-34 3E-38 269.7 34.9 320 31-411 139-459 (464)
79 1sq9_A Antiviral protein SKI8; 100.0 1.9E-35 6.5E-40 275.3 22.9 310 1-371 1-396 (397)
80 3mkq_A Coatomer beta'-subunit; 100.0 2.1E-34 7E-39 293.1 31.7 325 18-416 14-387 (814)
81 1yfq_A Cell cycle arrest prote 100.0 3.7E-34 1.3E-38 261.0 30.0 285 71-412 9-321 (342)
82 4gga_A P55CDC, cell division c 100.0 3.3E-34 1.1E-38 268.9 28.2 279 22-373 110-398 (420)
83 4a11_B DNA excision repair pro 100.0 1.4E-33 4.6E-38 263.5 32.2 336 17-415 43-405 (408)
84 4e54_B DNA damage-binding prot 100.0 2.6E-34 9E-39 270.8 26.9 258 126-427 121-399 (435)
85 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.9E-33 1.3E-37 263.8 34.7 280 71-422 116-398 (445)
86 4aez_A CDC20, WD repeat-contai 100.0 3.8E-34 1.3E-38 266.9 27.2 270 31-373 110-383 (401)
87 3dm0_A Maltose-binding peripla 100.0 1.7E-33 6E-38 280.8 32.7 250 127-422 385-639 (694)
88 3dwl_C Actin-related protein 2 100.0 5.3E-35 1.8E-39 270.4 20.1 250 127-415 14-281 (377)
89 3zwl_B Eukaryotic translation 100.0 5.1E-33 1.8E-37 255.9 33.1 291 15-371 30-347 (369)
90 3ei3_B DNA damage-binding prot 100.0 1.4E-33 4.9E-38 261.4 28.9 278 18-370 74-382 (383)
91 3mmy_A MRNA export factor; mRN 100.0 3.7E-33 1.3E-37 256.7 31.3 288 69-415 35-346 (368)
92 2j04_B YDR362CP, TAU91; beta p 100.0 2.1E-34 7.1E-39 275.0 23.6 239 140-416 170-429 (524)
93 3bg1_A Protein SEC13 homolog; 100.0 3.2E-34 1.1E-38 258.3 23.4 255 69-370 9-293 (316)
94 3dw8_B Serine/threonine-protei 100.0 8.8E-34 3E-38 268.3 27.2 260 125-419 29-377 (447)
95 3i2n_A WD repeat-containing pr 100.0 1.2E-33 4.1E-38 259.1 26.4 300 18-372 19-355 (357)
96 1k8k_C P40, ARP2/3 complex 41 100.0 2.6E-33 9E-38 258.3 28.7 249 127-415 11-274 (372)
97 2aq5_A Coronin-1A; WD40 repeat 100.0 2E-33 6.8E-38 262.2 27.5 244 140-418 43-302 (402)
98 3gre_A Serine/threonine-protei 100.0 1.8E-33 6E-38 265.5 23.8 287 79-425 33-369 (437)
99 4ggc_A P55CDC, cell division c 100.0 7.7E-33 2.6E-37 249.5 26.7 279 21-372 29-317 (318)
100 3f3f_A Nucleoporin SEH1; struc 100.0 1.5E-32 5.1E-37 250.5 28.6 271 70-373 8-340 (351)
101 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.2E-32 1.8E-36 256.4 32.7 240 127-415 105-391 (450)
102 1yfq_A Cell cycle arrest prote 100.0 2.1E-32 7.3E-37 249.3 28.4 249 126-424 13-291 (342)
103 4gq1_A NUP37; propeller, trans 100.0 6.9E-33 2.4E-37 257.4 25.1 248 139-414 97-388 (393)
104 2xyi_A Probable histone-bindin 100.0 3.5E-32 1.2E-36 255.9 29.7 266 70-371 125-411 (430)
105 3k26_A Polycomb protein EED; W 100.0 8.2E-33 2.8E-37 254.3 24.3 260 126-420 20-323 (366)
106 4h5i_A Guanine nucleotide-exch 100.0 2.9E-33 9.8E-38 257.1 21.1 291 20-371 17-344 (365)
107 3vu4_A KMHSV2; beta-propeller 100.0 6.9E-32 2.4E-36 247.1 29.2 283 70-421 16-342 (355)
108 3odt_A Protein DOA1; ubiquitin 100.0 8.5E-32 2.9E-36 242.0 29.1 275 17-375 18-301 (313)
109 3jro_A Fusion protein of prote 100.0 1.7E-32 5.7E-37 275.4 26.5 249 128-417 13-287 (753)
110 2j04_A TAU60, YPL007P, hypothe 100.0 2.4E-32 8E-37 254.8 25.4 265 71-414 13-296 (588)
111 3jrp_A Fusion protein of prote 100.0 1E-31 3.6E-36 248.1 24.7 254 70-371 8-288 (379)
112 3bws_A Protein LP49; two-domai 100.0 6.5E-31 2.2E-35 247.6 30.4 285 74-415 123-432 (433)
113 1p22_A F-BOX/WD-repeat protein 100.0 2.8E-30 9.4E-35 243.4 33.5 224 141-417 141-367 (435)
114 3lrv_A PRE-mRNA-splicing facto 100.0 1.2E-30 4.2E-35 237.9 28.4 283 77-416 40-334 (343)
115 3lrv_A PRE-mRNA-splicing facto 100.0 3.4E-31 1.2E-35 241.6 24.6 233 140-419 45-296 (343)
116 2j04_A TAU60, YPL007P, hypothe 100.0 3.3E-31 1.1E-35 247.1 23.1 285 20-404 18-350 (588)
117 1l0q_A Surface layer protein; 100.0 1.2E-29 4.2E-34 235.5 33.0 277 86-423 3-283 (391)
118 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.8E-30 1.3E-34 243.6 29.9 207 197-416 99-342 (450)
119 3jro_A Fusion protein of prote 100.0 1.6E-31 5.4E-36 268.3 20.0 253 70-370 6-285 (753)
120 3mmy_A MRNA export factor; mRN 100.0 8.7E-30 3E-34 234.2 28.8 251 126-424 41-313 (368)
121 3vu4_A KMHSV2; beta-propeller 100.0 4.1E-29 1.4E-33 228.7 30.2 240 126-417 21-273 (355)
122 1l0q_A Surface layer protein; 100.0 1.1E-28 3.7E-33 229.2 32.6 308 31-418 9-345 (391)
123 3bws_A Protein LP49; two-domai 100.0 1.2E-28 4.2E-33 232.0 31.7 301 73-422 60-397 (433)
124 2w18_A PALB2, fancn, partner a 100.0 8.3E-29 2.8E-33 217.1 26.1 184 214-413 146-355 (356)
125 4gq1_A NUP37; propeller, trans 100.0 2E-29 6.9E-34 234.0 21.3 298 119-425 10-358 (393)
126 1nir_A Nitrite reductase; hemo 100.0 3.3E-27 1.1E-31 227.1 30.3 334 31-423 156-522 (543)
127 2w18_A PALB2, fancn, partner a 100.0 8.7E-28 3E-32 210.7 22.4 215 72-368 110-355 (356)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.8E-25 2.3E-29 204.8 31.7 267 71-396 115-410 (415)
129 1nir_A Nitrite reductase; hemo 99.9 5.4E-25 1.8E-29 211.7 29.9 287 79-422 143-465 (543)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.6E-24 5.4E-29 202.3 30.9 293 72-416 61-388 (415)
131 3u4y_A Uncharacterized protein 99.9 8.2E-24 2.8E-28 191.6 30.9 286 79-418 3-307 (331)
132 2ecf_A Dipeptidyl peptidase IV 99.9 2.4E-24 8.3E-29 216.7 29.8 292 73-415 36-413 (741)
133 1xfd_A DIP, dipeptidyl aminope 99.9 1.1E-23 3.7E-28 211.4 31.3 344 20-417 19-445 (723)
134 1ri6_A Putative isomerase YBHE 99.9 2E-23 6.7E-28 189.9 28.6 248 125-414 38-307 (343)
135 2ecf_A Dipeptidyl peptidase IV 99.9 9.6E-24 3.3E-28 212.3 26.7 351 19-416 38-460 (741)
136 1ri6_A Putative isomerase YBHE 99.9 1.7E-22 5.8E-27 183.7 28.5 298 31-395 12-334 (343)
137 3vgz_A Uncharacterized protein 99.9 3.8E-22 1.3E-26 182.2 30.8 286 73-404 40-334 (353)
138 2z3z_A Dipeptidyl aminopeptida 99.9 1.3E-22 4.4E-27 202.9 29.6 296 74-417 82-437 (706)
139 3hfq_A Uncharacterized protein 99.9 6.3E-22 2.2E-26 180.5 31.0 277 99-419 17-323 (347)
140 2ojh_A Uncharacterized protein 99.9 6.9E-23 2.4E-27 182.0 23.4 253 100-405 22-292 (297)
141 1xfd_A DIP, dipeptidyl aminope 99.9 1.7E-22 5.7E-27 202.7 26.3 290 75-416 18-394 (723)
142 1k32_A Tricorn protease; prote 99.9 2.1E-22 7.3E-27 209.4 27.9 286 72-417 294-639 (1045)
143 2oit_A Nucleoporin 214KDA; NH2 99.9 6.7E-22 2.3E-26 185.1 26.1 216 73-319 36-279 (434)
144 3u4y_A Uncharacterized protein 99.9 8E-22 2.7E-26 178.5 25.6 243 140-418 6-255 (331)
145 3vgz_A Uncharacterized protein 99.9 1.4E-21 4.8E-26 178.4 26.0 239 140-422 49-310 (353)
146 2ojh_A Uncharacterized protein 99.9 4.1E-22 1.4E-26 176.9 21.6 228 148-418 17-261 (297)
147 1pby_B Quinohemoprotein amine 99.9 2.2E-21 7.5E-26 175.8 26.2 277 86-422 2-317 (337)
148 3scy_A Hypothetical bacterial 99.9 1.2E-20 4E-25 173.1 30.3 294 78-418 6-342 (361)
149 1z68_A Fibroblast activation p 99.9 1.2E-21 4.2E-26 196.3 24.3 334 21-419 19-447 (719)
150 1jmx_B Amine dehydrogenase; ox 99.9 7.7E-21 2.6E-25 173.2 27.0 248 137-422 5-332 (349)
151 2oit_A Nucleoporin 214KDA; NH2 99.9 1E-21 3.6E-26 183.8 21.3 203 200-417 36-280 (434)
152 1k32_A Tricorn protease; prote 99.9 6.7E-21 2.3E-25 198.2 27.7 291 70-416 200-503 (1045)
153 3o4h_A Acylamino-acid-releasin 99.9 3.1E-21 1.1E-25 188.4 23.3 273 73-415 21-315 (582)
154 3hfq_A Uncharacterized protein 99.9 1.1E-19 3.6E-24 165.7 30.0 266 74-374 40-323 (347)
155 2z3z_A Dipeptidyl aminopeptida 99.9 1.2E-20 4.2E-25 188.6 24.7 281 75-417 27-393 (706)
156 3pe7_A Oligogalacturonate lyas 99.9 1.4E-19 4.9E-24 167.4 23.8 285 76-415 38-382 (388)
157 3o4h_A Acylamino-acid-releasin 99.8 1.8E-20 6E-25 183.1 17.8 227 140-419 30-278 (582)
158 1jof_A Carboxy-CIS,CIS-muconat 99.8 5.9E-19 2E-23 161.9 26.7 240 140-416 48-342 (365)
159 1pby_B Quinohemoprotein amine 99.8 1.4E-19 4.9E-24 163.8 21.4 234 144-422 2-276 (337)
160 3scy_A Hypothetical bacterial 99.8 6.9E-18 2.4E-22 154.5 32.6 285 73-392 49-360 (361)
161 1z68_A Fibroblast activation p 99.8 4.5E-20 1.6E-24 184.9 19.5 282 77-415 19-391 (719)
162 3c5m_A Oligogalacturonate lyas 99.8 3.1E-18 1E-22 158.8 22.7 302 74-414 36-381 (396)
163 1jmx_B Amine dehydrogenase; ox 99.8 4.7E-18 1.6E-22 154.7 23.5 239 78-374 4-329 (349)
164 4a5s_A Dipeptidyl peptidase 4 99.8 1.5E-17 5.3E-22 166.7 27.1 347 13-419 7-453 (740)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.2E-16 4.1E-21 146.5 28.7 248 74-372 40-343 (365)
166 2oiz_A Aromatic amine dehydrog 99.8 1.7E-16 5.8E-21 144.9 28.2 268 78-396 54-360 (361)
167 3pe7_A Oligogalacturonate lyas 99.8 7.4E-17 2.5E-21 149.1 26.1 241 137-418 41-332 (388)
168 4a5s_A Dipeptidyl peptidase 4 99.8 6.4E-17 2.2E-21 162.2 27.2 286 75-413 18-396 (740)
169 3fvz_A Peptidyl-glycine alpha- 99.8 2.2E-16 7.5E-21 142.5 27.4 234 140-416 32-323 (329)
170 1q7f_A NHL, brain tumor CG1071 99.8 8.2E-16 2.8E-20 135.9 29.6 238 140-418 38-283 (286)
171 2xdw_A Prolyl endopeptidase; a 99.8 1.8E-15 6E-20 151.1 32.4 287 82-417 80-416 (710)
172 2oiz_A Aromatic amine dehydrog 99.8 9.4E-16 3.2E-20 140.0 27.5 289 83-422 13-343 (361)
173 1qks_A Cytochrome CD1 nitrite 99.7 1.9E-15 6.4E-20 145.1 29.9 309 75-422 198-545 (567)
174 3azo_A Aminopeptidase; POP fam 99.7 3E-16 1E-20 155.7 25.2 292 71-418 21-372 (662)
175 2gop_A Trilobed protease; beta 99.7 2.2E-15 7.6E-20 137.0 27.0 264 74-414 15-330 (347)
176 2dg1_A DRP35, lactonase; beta 99.7 4.1E-15 1.4E-19 134.4 28.1 281 74-414 6-315 (333)
177 2bkl_A Prolyl endopeptidase; m 99.7 2.3E-15 7.7E-20 149.9 27.7 285 81-418 75-400 (695)
178 3fvz_A Peptidyl-glycine alpha- 99.7 2.7E-15 9.2E-20 135.4 24.2 256 73-370 23-322 (329)
179 1rwi_B Serine/threonine-protei 99.7 6.2E-15 2.1E-19 129.0 25.4 235 140-419 32-268 (270)
180 3azo_A Aminopeptidase; POP fam 99.7 6.9E-16 2.4E-20 153.0 21.2 242 78-373 81-372 (662)
181 1q7f_A NHL, brain tumor CG1071 99.7 3.8E-14 1.3E-18 125.1 28.5 244 71-372 27-282 (286)
182 3c5m_A Oligogalacturonate lyas 99.7 5.1E-16 1.8E-20 143.8 17.1 235 136-418 40-332 (396)
183 2z2n_A Virginiamycin B lyase; 99.7 4.9E-13 1.7E-17 118.5 34.4 281 73-416 14-296 (299)
184 2xdw_A Prolyl endopeptidase; a 99.7 1.9E-13 6.6E-18 136.4 31.6 254 72-372 123-416 (710)
185 3dsm_A Uncharacterized protein 99.6 3.8E-14 1.3E-18 127.6 23.5 234 142-421 53-307 (328)
186 3e5z_A Putative gluconolactona 99.6 6.7E-14 2.3E-18 124.2 22.9 228 140-418 36-289 (296)
187 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 3.3E-13 1.1E-17 120.7 27.6 242 140-417 26-301 (314)
188 1qks_A Cytochrome CD1 nitrite 99.6 5.9E-13 2E-17 127.7 31.0 266 101-416 178-478 (567)
189 2dg1_A DRP35, lactonase; beta 99.6 6.3E-14 2.1E-18 126.6 23.1 236 138-420 12-267 (333)
190 1yr2_A Prolyl oligopeptidase; 99.6 2.2E-13 7.6E-18 136.6 28.5 286 81-417 114-443 (741)
191 2gop_A Trilobed protease; beta 99.6 6.5E-14 2.2E-18 127.2 21.5 228 74-369 59-330 (347)
192 1rwi_B Serine/threonine-protei 99.6 2E-13 6.9E-18 119.3 23.3 241 75-372 25-266 (270)
193 3no2_A Uncharacterized protein 99.6 4.4E-13 1.5E-17 117.2 24.1 231 141-420 3-257 (276)
194 2mad_H Methylamine dehydrogena 99.6 7.8E-12 2.7E-16 114.1 32.4 291 80-422 27-357 (373)
195 2bkl_A Prolyl endopeptidase; m 99.6 2.3E-13 8E-18 135.4 23.4 254 71-373 118-400 (695)
196 2qc5_A Streptogramin B lactona 99.6 1.1E-11 3.7E-16 109.9 31.6 279 73-414 19-299 (300)
197 3sjl_D Methylamine dehydrogena 99.6 1.6E-12 5.6E-17 117.1 25.8 294 78-422 37-370 (386)
198 3e5z_A Putative gluconolactona 99.6 1.1E-12 3.9E-17 116.2 23.6 203 198-420 25-250 (296)
199 3g4e_A Regucalcin; six bladed 99.5 4.7E-12 1.6E-16 112.2 26.6 226 140-405 21-263 (297)
200 2z2n_A Virginiamycin B lyase; 99.5 1.8E-11 6.3E-16 108.3 29.3 229 140-413 23-253 (299)
201 3hrp_A Uncharacterized protein 99.5 4.3E-12 1.5E-16 117.5 24.3 230 140-413 139-408 (409)
202 3dsm_A Uncharacterized protein 99.5 3.1E-12 1.1E-16 115.1 22.0 227 151-420 15-258 (328)
203 3no2_A Uncharacterized protein 99.5 5E-12 1.7E-16 110.5 20.6 189 214-423 6-203 (276)
204 1yr2_A Prolyl oligopeptidase; 99.5 1.4E-11 4.8E-16 123.5 26.3 250 73-372 162-443 (741)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 2.9E-11 9.8E-16 108.0 25.5 248 74-371 18-300 (314)
206 3c75_H MADH, methylamine dehyd 99.5 2.6E-11 8.9E-16 111.3 24.1 293 82-422 81-409 (426)
207 2qc5_A Streptogramin B lactona 99.4 2.6E-10 8.7E-15 100.9 29.5 230 140-414 28-259 (300)
208 2ghs_A AGR_C_1268P; regucalcin 99.4 1.9E-10 6.4E-15 103.3 28.3 223 140-406 57-294 (326)
209 3iuj_A Prolyl endopeptidase; h 99.4 6.6E-11 2.3E-15 117.6 27.7 252 72-373 127-408 (693)
210 1xip_A Nucleoporin NUP159; bet 99.4 5.4E-12 1.8E-16 114.3 17.8 172 202-401 39-230 (388)
211 3iuj_A Prolyl endopeptidase; h 99.4 2E-11 6.9E-16 121.3 22.4 235 139-417 136-407 (693)
212 2mad_H Methylamine dehydrogena 99.4 8.6E-10 2.9E-14 100.6 30.8 240 78-373 70-353 (373)
213 1xip_A Nucleoporin NUP159; bet 99.4 1.3E-11 4.6E-16 111.7 16.9 177 140-357 46-231 (388)
214 3hrp_A Uncharacterized protein 99.4 3E-10 1E-14 105.1 26.0 239 74-368 131-408 (409)
215 2qe8_A Uncharacterized protein 99.4 2.6E-11 8.8E-16 109.8 17.7 282 74-410 17-316 (343)
216 3sjl_D Methylamine dehydrogena 99.3 1.8E-09 6.3E-14 97.3 27.2 258 79-394 83-384 (386)
217 3g4e_A Regucalcin; six bladed 99.3 1.3E-09 4.3E-14 96.5 25.2 208 199-422 11-236 (297)
218 1mda_H Methylamine dehydrogena 99.2 3E-10 1E-14 102.6 17.3 238 144-423 33-354 (368)
219 3c75_H MADH, methylamine dehyd 99.2 4.4E-09 1.5E-13 96.6 25.1 242 78-373 122-405 (426)
220 2ghs_A AGR_C_1268P; regucalcin 99.2 9.5E-09 3.2E-13 92.1 26.3 227 76-360 51-293 (326)
221 1npe_A Nidogen, entactin; glyc 99.2 2.3E-08 7.9E-13 86.8 27.5 207 201-423 36-246 (267)
222 3dr2_A Exported gluconolactona 99.2 2.5E-09 8.7E-14 95.0 20.8 224 140-412 53-303 (305)
223 3dr2_A Exported gluconolactona 99.2 7.8E-09 2.7E-13 91.8 22.7 226 74-361 45-298 (305)
224 2ece_A 462AA long hypothetical 99.1 3.8E-08 1.3E-12 89.5 25.6 233 141-402 93-399 (462)
225 1fwx_A Nitrous oxide reductase 99.1 3.4E-09 1.2E-13 99.7 18.6 247 141-417 99-433 (595)
226 1yiq_A Quinohemoprotein alcoho 99.1 3E-08 1E-12 98.0 23.4 251 142-422 120-512 (689)
227 1ijq_A LDL receptor, low-densi 99.1 7E-07 2.4E-11 79.4 30.2 211 200-422 29-245 (316)
228 2hz6_A Endoplasmic reticulum t 99.0 3.1E-11 1.1E-15 110.2 1.4 184 214-421 10-198 (369)
229 2iwa_A Glutamine cyclotransfer 99.0 5.4E-08 1.8E-12 83.1 21.0 198 202-417 22-239 (266)
230 1npe_A Nidogen, entactin; glyc 99.0 4.6E-07 1.6E-11 78.6 27.5 216 140-396 44-263 (267)
231 2hz6_A Endoplasmic reticulum t 99.0 1E-10 3.5E-15 106.8 3.6 204 142-396 8-216 (369)
232 1kb0_A Quinohemoprotein alcoho 99.0 2.6E-08 9E-13 98.1 20.1 243 142-424 127-516 (677)
233 1fwx_A Nitrous oxide reductase 99.0 2E-08 6.7E-13 94.6 18.1 254 146-415 18-361 (595)
234 1mda_H Methylamine dehydrogena 99.0 2E-08 6.9E-13 90.7 17.2 251 78-393 69-366 (368)
235 3v65_B Low-density lipoprotein 99.0 8.3E-07 2.8E-11 81.3 28.1 210 201-423 116-326 (386)
236 2ece_A 462AA long hypothetical 99.0 2.6E-08 8.7E-13 90.6 16.8 197 206-415 87-352 (462)
237 2qe8_A Uncharacterized protein 98.9 1.7E-08 5.8E-13 91.2 15.0 212 201-417 17-280 (343)
238 3p5b_L Low density lipoprotein 98.9 3.8E-06 1.3E-10 77.2 30.8 214 199-423 110-328 (400)
239 3v64_C Agrin; beta propeller, 98.9 3.1E-06 1E-10 76.3 29.6 208 201-422 73-282 (349)
240 2iwa_A Glutamine cyclotransfer 98.9 2.3E-07 7.7E-12 79.2 20.3 190 140-371 29-238 (266)
241 3q7m_A Lipoprotein YFGL, BAMB; 98.9 1.7E-06 5.8E-11 79.1 27.5 228 142-422 102-344 (376)
242 2fp8_A Strictosidine synthase; 98.9 1.1E-06 3.9E-11 78.4 25.1 252 140-416 27-314 (322)
243 1yiq_A Quinohemoprotein alcoho 98.9 6.4E-07 2.2E-11 88.5 24.8 184 204-402 238-536 (689)
244 3hxj_A Pyrrolo-quinoline quino 98.9 1.4E-07 4.8E-12 84.5 18.5 220 143-417 107-326 (330)
245 3q7m_A Lipoprotein YFGL, BAMB; 98.9 3.3E-06 1.1E-10 77.1 27.9 223 143-412 143-375 (376)
246 3nol_A Glutamine cyclotransfer 98.8 1.2E-06 4.2E-11 73.8 21.0 184 202-403 44-244 (262)
247 1kb0_A Quinohemoprotein alcoho 98.8 1.3E-06 4.5E-11 86.1 24.7 201 203-417 245-569 (677)
248 2p4o_A Hypothetical protein; p 98.8 3.9E-06 1.3E-10 74.3 25.7 230 125-403 32-277 (306)
249 3nok_A Glutaminyl cyclase; bet 98.8 8.2E-07 2.8E-11 74.8 19.7 181 202-403 56-254 (268)
250 3hxj_A Pyrrolo-quinoline quino 98.8 1.7E-07 5.8E-12 83.9 16.2 180 215-420 109-288 (330)
251 3sov_A LRP-6, low-density lipo 98.8 1.3E-05 4.5E-10 71.0 27.4 209 201-422 35-245 (318)
252 3mbr_X Glutamine cyclotransfer 98.8 4.2E-06 1.4E-10 69.9 22.1 184 201-403 21-223 (243)
253 3qqz_A Putative uncharacterize 98.7 2.4E-05 8.3E-10 66.3 27.0 207 196-414 22-252 (255)
254 1k3i_A Galactose oxidase precu 98.7 1E-06 3.5E-11 86.8 20.2 277 78-404 190-530 (656)
255 3m0c_C LDL receptor, low-densi 98.7 2.4E-05 8.2E-10 77.8 29.6 212 200-422 423-639 (791)
256 3nol_A Glutamine cyclotransfer 98.7 1.6E-06 5.5E-11 73.1 17.6 172 142-358 52-244 (262)
257 1kv9_A Type II quinohemoprotei 98.7 4.5E-06 1.5E-10 82.2 23.3 250 142-422 116-495 (668)
258 3v64_C Agrin; beta propeller, 98.6 7.4E-05 2.5E-09 67.3 28.6 201 127-372 75-277 (349)
259 3nok_A Glutaminyl cyclase; bet 98.6 4.2E-06 1.5E-10 70.5 18.7 174 142-359 64-255 (268)
260 2xe4_A Oligopeptidase B; hydro 98.6 4.1E-05 1.4E-09 76.5 28.8 250 75-373 175-461 (751)
261 4a2l_A BT_4663, two-component 98.6 0.00028 9.5E-09 71.2 34.6 198 200-418 262-483 (795)
262 3v65_B Low-density lipoprotein 98.6 4.9E-05 1.7E-09 69.5 26.3 202 127-373 118-321 (386)
263 2fp8_A Strictosidine synthase; 98.6 1.8E-05 6.1E-10 70.5 22.7 244 75-372 20-315 (322)
264 4a2l_A BT_4663, two-component 98.6 0.00014 4.6E-09 73.5 31.3 278 76-418 133-439 (795)
265 2xe4_A Oligopeptidase B; hydro 98.6 6.1E-06 2.1E-10 82.5 21.0 236 138-417 180-460 (751)
266 1n7d_A LDL receptor, low-densi 98.5 4.1E-07 1.4E-11 89.8 12.0 211 201-422 406-621 (699)
267 3mbr_X Glutamine cyclotransfer 98.5 2.2E-05 7.5E-10 65.6 20.5 173 143-358 31-223 (243)
268 2p4o_A Hypothetical protein; p 98.5 6.8E-05 2.3E-09 66.2 24.1 230 74-360 32-278 (306)
269 1ijq_A LDL receptor, low-densi 98.5 8.8E-05 3E-09 65.8 24.9 181 223-415 10-195 (316)
270 4a0p_A LRP6, LRP-6, low-densit 98.4 0.00036 1.2E-08 67.9 29.1 206 201-421 37-243 (628)
271 1w6s_A Methanol dehydrogenase 98.4 6.7E-05 2.3E-09 72.4 23.1 59 360-422 452-510 (599)
272 2ad6_A Methanol dehydrogenase 98.4 4.1E-05 1.4E-09 73.8 21.1 242 142-423 114-502 (571)
273 3sov_A LRP-6, low-density lipo 98.4 0.00061 2.1E-08 60.3 26.4 203 127-373 37-241 (318)
274 1kv9_A Type II quinohemoprotei 98.3 9.7E-05 3.3E-09 72.7 22.9 188 202-403 231-520 (668)
275 3p5b_L Low density lipoprotein 98.3 0.00044 1.5E-08 63.4 24.9 188 215-416 85-278 (400)
276 3tc9_A Hypothetical hydrolase; 98.3 0.0002 6.9E-09 66.4 22.7 205 200-414 178-429 (430)
277 3v9f_A Two-component system se 98.3 0.0013 4.4E-08 66.2 30.2 284 73-417 312-613 (781)
278 4hw6_A Hypothetical protein, I 98.3 0.00025 8.5E-09 65.8 22.9 204 200-414 181-432 (433)
279 1k3i_A Galactose oxidase precu 98.3 1.8E-05 6.3E-10 77.9 16.1 241 140-417 194-499 (656)
280 1flg_A Protein (quinoprotein e 98.3 0.00035 1.2E-08 67.4 24.3 59 360-422 465-523 (582)
281 3s94_A LRP-6, low-density lipo 98.2 0.00048 1.7E-08 66.9 25.0 209 200-421 39-249 (619)
282 3amr_A 3-phytase; beta-propell 98.2 0.00042 1.4E-08 61.0 21.3 194 214-414 41-262 (355)
283 4hw6_A Hypothetical protein, I 98.1 0.00073 2.5E-08 62.6 22.9 200 201-413 139-372 (433)
284 2ad6_A Methanol dehydrogenase 98.1 0.00099 3.4E-08 64.1 24.5 165 224-402 273-525 (571)
285 3v9f_A Two-component system se 98.1 0.0098 3.4E-07 59.8 35.2 204 201-417 163-394 (781)
286 3m0c_C LDL receptor, low-densi 98.1 0.0015 5.1E-08 65.1 25.8 162 200-372 470-634 (791)
287 3qqz_A Putative uncharacterize 98.1 0.0026 9E-08 53.8 23.5 190 140-368 35-251 (255)
288 3tc9_A Hypothetical hydrolase; 98.1 0.00085 2.9E-08 62.1 21.9 157 201-370 137-301 (430)
289 2p9w_A MAL S 1 allergenic prot 98.0 0.0028 9.6E-08 55.3 22.9 204 199-415 11-265 (334)
290 3kya_A Putative phosphatase; s 98.0 0.0027 9.2E-08 59.2 23.9 212 201-422 186-482 (496)
291 1n7d_A LDL receptor, low-densi 98.0 3.4E-05 1.1E-09 76.2 11.1 159 202-372 454-616 (699)
292 3kya_A Putative phosphatase; s 97.9 0.004 1.4E-07 58.1 23.3 216 202-423 140-416 (496)
293 3s94_A LRP-6, low-density lipo 97.9 0.016 5.3E-07 56.3 28.4 203 201-416 349-552 (619)
294 2ism_A Putative oxidoreductase 97.9 0.0066 2.2E-07 54.5 23.3 233 140-402 39-332 (352)
295 1flg_A Protein (quinoprotein e 97.9 0.012 4.1E-07 56.7 26.2 167 223-402 291-547 (582)
296 4a0p_A LRP6, LRP-6, low-densit 97.7 0.038 1.3E-06 53.7 29.7 206 201-420 340-554 (628)
297 2xbg_A YCF48-like protein; pho 97.6 0.029 9.9E-07 49.7 28.9 195 201-413 122-320 (327)
298 2g8s_A Glucose/sorbosone dehyd 97.6 0.033 1.1E-06 49.9 26.8 237 140-401 26-339 (353)
299 2vpj_A Kelch-like protein 12; 97.6 0.0096 3.3E-07 52.0 19.8 147 214-376 114-284 (301)
300 1w6s_A Methanol dehydrogenase 97.6 0.0049 1.7E-07 59.4 19.0 194 215-422 64-349 (599)
301 2p9w_A MAL S 1 allergenic prot 97.6 0.0066 2.3E-07 53.0 17.3 165 239-415 8-215 (334)
302 2vpj_A Kelch-like protein 12; 97.5 0.007 2.4E-07 52.9 18.1 185 214-417 64-280 (301)
303 3ii7_A Kelch-like protein 7; p 97.5 0.018 6.3E-07 50.3 20.5 150 214-379 103-281 (306)
304 3amr_A 3-phytase; beta-propell 97.5 0.023 7.9E-07 50.1 20.3 196 141-372 38-266 (355)
305 2xzh_A Clathrin heavy chain 1; 97.5 0.042 1.4E-06 47.7 24.5 199 206-421 72-296 (365)
306 3ii7_A Kelch-like protein 7; p 97.5 0.013 4.5E-07 51.3 19.1 185 214-417 57-274 (306)
307 3sre_A PON1, serum paraoxonase 97.5 0.046 1.6E-06 48.7 22.1 187 202-405 51-287 (355)
308 2xn4_A Kelch-like protein 2; s 97.4 0.014 4.9E-07 50.9 18.4 185 214-417 63-278 (302)
309 2xzh_A Clathrin heavy chain 1; 97.4 0.054 1.9E-06 47.0 30.2 246 140-422 75-339 (365)
310 1bpo_A Protein (clathrin); cla 97.4 0.081 2.8E-06 47.8 24.7 200 205-421 70-295 (494)
311 1bpo_A Protein (clathrin); cla 97.3 0.1 3.5E-06 47.2 30.7 244 140-421 74-337 (494)
312 2xbg_A YCF48-like protein; pho 97.2 0.1 3.5E-06 46.1 24.1 150 199-368 161-320 (327)
313 1zgk_A Kelch-like ECH-associat 97.2 0.026 9E-07 49.4 17.5 185 214-417 72-289 (308)
314 1zgk_A Kelch-like ECH-associat 97.2 0.071 2.4E-06 46.6 20.2 147 214-376 123-293 (308)
315 3a9g_A Putative uncharacterize 97.2 0.13 4.3E-06 46.1 24.5 234 140-403 37-330 (354)
316 2ism_A Putative oxidoreductase 97.1 0.085 2.9E-06 47.2 20.4 64 288-357 269-332 (352)
317 1xi4_A Clathrin heavy chain; a 97.1 0.24 8.3E-06 51.8 24.5 243 140-420 74-336 (1630)
318 4asc_A Kelch repeat and BTB do 97.0 0.077 2.6E-06 46.5 18.8 175 225-417 69-279 (315)
319 2xn4_A Kelch-like protein 2; s 96.8 0.21 7.1E-06 43.4 20.5 144 214-373 110-279 (302)
320 3das_A Putative oxidoreductase 96.7 0.3 1E-05 43.2 25.4 236 140-401 40-324 (347)
321 3pbp_A Nucleoporin NUP82; beta 96.7 0.1 3.5E-06 47.1 16.3 148 215-366 34-208 (452)
322 2uvk_A YJHT; unknown function, 96.5 0.1 3.6E-06 46.6 16.1 59 362-423 286-350 (357)
323 1tl2_A L10, protein (tachylect 96.5 0.2 6.9E-06 40.8 15.6 183 213-414 4-207 (236)
324 3ei3_A DNA damage-binding prot 96.3 1.4 4.9E-05 46.0 29.3 174 224-415 808-999 (1158)
325 3ei3_A DNA damage-binding prot 96.2 1.5 5.2E-05 45.8 32.9 190 121-350 550-748 (1158)
326 2woz_A Kelch repeat and BTB do 96.1 0.38 1.3E-05 42.1 16.8 173 225-417 80-289 (318)
327 3pbp_A Nucleoporin NUP82; beta 96.0 0.89 3E-05 41.2 21.4 142 265-410 40-207 (452)
328 3sre_A PON1, serum paraoxonase 95.9 0.83 2.8E-05 40.6 27.7 157 201-369 112-297 (355)
329 1tl2_A L10, protein (tachylect 95.9 0.094 3.2E-06 42.7 10.7 101 202-312 42-157 (236)
330 1cru_A Protein (soluble quinop 95.9 0.68 2.3E-05 42.9 18.2 110 244-358 27-162 (454)
331 2uvk_A YJHT; unknown function, 95.8 0.79 2.7E-05 40.7 18.2 60 310-379 286-351 (357)
332 2g8s_A Glucose/sorbosone dehyd 95.8 0.97 3.3E-05 40.2 20.4 62 287-356 271-339 (353)
333 4asc_A Kelch repeat and BTB do 95.8 0.88 3E-05 39.6 20.8 147 214-376 100-283 (315)
334 1xi4_A Clathrin heavy chain; a 95.6 0.89 3.1E-05 47.8 19.0 199 206-421 71-295 (1630)
335 3sbq_A Nitrous-oxide reductase 95.6 1.5 5.2E-05 41.1 20.0 258 146-416 73-409 (638)
336 3a9g_A Putative uncharacterize 95.3 1.5 5E-05 39.1 21.9 209 201-416 29-297 (354)
337 1cru_A Protein (soluble quinop 95.2 1.9 6.7E-05 39.8 28.6 57 353-409 371-430 (454)
338 3s25_A Hypothetical 7-bladed b 95.0 1.6 5.4E-05 37.9 22.1 174 207-412 110-290 (302)
339 2zwa_A Leucine carboxyl methyl 94.9 0.61 2.1E-05 46.0 15.1 194 214-418 399-638 (695)
340 2woz_A Kelch repeat and BTB do 94.4 1.1 3.9E-05 39.0 14.5 184 215-417 18-233 (318)
341 2zwa_A Leucine carboxyl methyl 94.2 3.8 0.00013 40.3 19.1 104 214-319 502-636 (695)
342 3ott_A Two-component system se 94.0 5.3 0.00018 39.7 26.0 191 200-417 62-262 (758)
343 3das_A Putative oxidoreductase 93.8 3.4 0.00011 36.5 17.9 159 238-401 26-218 (347)
344 2be1_A Serine/threonine-protei 92.7 0.22 7.4E-06 44.0 6.5 194 214-420 11-236 (339)
345 3s25_A Hypothetical 7-bladed b 91.3 6.6 0.00022 33.9 18.8 103 206-318 150-255 (302)
346 3ott_A Two-component system se 90.1 16 0.00054 36.2 31.8 185 202-411 104-303 (758)
347 3qhy_B Beta-lactamase inhibito 89.5 9.2 0.00031 32.6 21.2 187 201-418 63-249 (282)
348 3b7f_A Glycosyl hydrolase, BNR 89.1 12 0.00042 33.5 18.3 99 214-314 23-143 (394)
349 2wg3_C Hedgehog-interacting pr 88.3 12 0.00042 34.5 14.3 113 287-406 14-160 (463)
350 3sbq_A Nitrous-oxide reductase 87.3 20 0.00068 33.9 19.2 103 267-370 299-408 (638)
351 3b7f_A Glycosyl hydrolase, BNR 83.2 25 0.00086 31.4 24.1 155 201-367 55-259 (394)
352 2wg3_C Hedgehog-interacting pr 81.0 34 0.0012 31.5 30.1 74 329-403 265-354 (463)
353 1sqj_A OXG-RCBH, oligoxylogluc 78.8 55 0.0019 32.6 22.5 153 200-363 14-194 (789)
354 4gq2_M Nucleoporin NUP120; bet 78.6 43 0.0015 34.2 14.7 38 201-239 236-273 (950)
355 2be1_A Serine/threonine-protei 78.3 9.2 0.00031 33.6 8.5 113 300-423 11-138 (339)
356 1sqj_A OXG-RCBH, oligoxylogluc 76.6 61 0.0021 32.3 15.0 153 243-405 14-190 (789)
357 2cn3_A Xyloglucanase, beta-1,4 75.7 65 0.0022 31.8 22.5 106 202-308 24-153 (737)
358 3qhy_B Beta-lactamase inhibito 73.2 42 0.0014 28.4 22.5 164 201-395 102-265 (282)
359 4hvt_A Ritya.17583.B, post-pro 69.7 88 0.003 30.7 21.7 238 139-417 137-431 (711)
360 4gq2_M Nucleoporin NUP120; bet 64.5 45 0.0015 34.1 11.0 37 385-422 237-273 (950)
361 3q6k_A 43.2 kDa salivary prote 61.0 91 0.0031 27.8 24.2 170 200-403 151-342 (381)
362 4fhn_B Nucleoporin NUP120; pro 57.8 24 0.00081 37.0 7.8 38 202-240 239-276 (1139)
363 3zwu_A Alkaline phosphatase PH 56.9 42 0.0014 32.0 8.6 60 340-401 477-548 (592)
364 3a0f_A Xyloglucanase; beta-pro 46.6 2.3E+02 0.0077 28.0 23.9 155 199-361 19-203 (763)
365 3uc1_A DNA gyrase subunit A; D 45.8 1.5E+02 0.0051 25.7 17.4 152 142-318 108-279 (327)
366 4a9v_A PHOX; hydrolase, beta-p 44.8 98 0.0034 29.3 8.8 66 339-406 476-553 (592)
367 3f7f_A Nucleoporin NUP120; nuc 43.8 41 0.0014 32.9 6.3 38 201-241 222-259 (729)
368 2zux_A YESW protein; beta-prop 43.6 2.2E+02 0.0074 26.9 24.2 176 199-395 177-425 (591)
369 4fhn_B Nucleoporin NUP120; pro 42.5 54 0.0019 34.3 7.6 36 385-421 239-274 (1139)
370 2cn3_A Xyloglucanase, beta-1,4 41.1 2.7E+02 0.0092 27.3 14.9 108 245-360 24-153 (737)
371 3l6v_A GYRA, DNA gyrase subuni 36.0 2.3E+02 0.0078 25.0 21.2 118 200-319 98-266 (370)
372 3zwu_A Alkaline phosphatase PH 31.2 2E+02 0.0067 27.5 8.7 58 202-261 477-547 (592)
373 3f7f_A Nucleoporin NUP120; nuc 30.9 54 0.0018 32.0 4.9 37 385-424 223-259 (729)
374 3a0f_A Xyloglucanase; beta-pro 29.3 4.2E+02 0.014 26.1 17.7 65 242-306 19-94 (763)
375 1suu_A DNA gyrase subunit A; t 29.0 2.7E+02 0.0093 23.8 21.2 194 214-415 9-231 (312)
376 4a9v_A PHOX; hydrolase, beta-p 28.3 2.8E+02 0.0097 26.3 9.0 61 201-262 476-549 (592)
377 1suu_A DNA gyrase subunit A; t 27.9 2.8E+02 0.0097 23.6 24.9 205 141-370 6-231 (312)
378 3uc1_A DNA gyrase subunit A; D 27.5 3E+02 0.01 23.7 20.1 166 200-369 94-278 (327)
379 1zi0_A DNA gyrase subunit A; b 23.1 3.5E+02 0.012 23.0 23.1 166 200-370 94-277 (307)
380 3q6k_A 43.2 kDa salivary prote 22.9 4E+02 0.014 23.6 16.3 126 287-415 152-306 (381)
381 3no0_A DNA gyrase subunit A; D 22.0 3.5E+02 0.012 22.6 20.5 207 201-415 24-246 (276)
382 2zuy_A YESX protein; beta-prop 21.9 5.2E+02 0.018 24.6 24.2 180 198-396 180-430 (620)
383 3no0_A DNA gyrase subunit A; D 21.2 3.6E+02 0.012 22.5 17.5 163 200-370 67-246 (276)
No 1
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-47 Score=349.14 Aligned_cols=303 Identities=20% Similarity=0.229 Sum_probs=241.3
Q ss_pred CCccccccceeccCCceEEEEEecCCcc--eeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEE
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVS--HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV 148 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 148 (436)
.++..|.+++|+|||++|++++ ++..+ ...++.|+....................+.+++| +|++ .|++
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------s~d~-~l~~ 98 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTW-------VGER-GILV 98 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEE-------ETTT-EEEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEE-------eCCC-eEEE
Confidence 4567799999999999998876 43332 2345555433221111000011111223457777 7775 6889
Q ss_pred eeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEE
Q 013827 149 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 228 (436)
Q Consensus 149 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vw 228 (436)
|+.||+|+|||+.+++..... ...+.+|.+.|++++|+|+| .+|++|+.|++|++|
T Consensus 99 ~s~dg~v~lWd~~~~~~~~~~-----------------------~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iw 154 (344)
T 4gqb_B 99 ASDSGAVELWELDENETLIVS-----------------------KFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVW 154 (344)
T ss_dssp EETTSEEEEEEECTTSSCEEE-----------------------EEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEE
T ss_pred EECCCEEEEEeccCCCceeEe-----------------------eccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEE
Confidence 999999999999876654332 12244799999999999997 599999999999999
Q ss_pred eCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccce--EeeeCCeeEEEeCCCCCcEEEEEe
Q 013827 229 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--WAVAADVESLAWDPHAEHSFVVSL 306 (436)
Q Consensus 229 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~ 306 (436)
|+++++++..+.+|...|.+++|++++..+|++++.|++|++||+++.+..... ..+...+.+++|+|++.+++++|+
T Consensus 155 d~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~ 234 (344)
T 4gqb_B 155 DLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD 234 (344)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE
T ss_pred ECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec
Confidence 999999999999999999999999998778999999999999999988766533 244567899999998888999999
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcE
Q 013827 307 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAV 386 (436)
Q Consensus 307 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 386 (436)
.||.|++||+++. +++..+.+|...|++++|+|++..+|++|+.|++|+|||+++++ +....+|.+.|
T Consensus 235 ~dg~v~~wd~~~~---------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~---~~~~~~H~~~V 302 (344)
T 4gqb_B 235 ENGTVSLVDTKST---------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE---LFRSQAHRDFV 302 (344)
T ss_dssp TTSEEEEEESCC-----------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE---EEEECCCSSCE
T ss_pred cCCcEEEEECCCC---------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc---EEEEcCCCCCE
Confidence 9999999999987 66889999999999999999986789999999999999999876 44568899999
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 387 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 387 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
++++|+|+++++|++++.||+|++|++.+...
T Consensus 303 ~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 303 RDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 99999999988889999999999999987543
No 2
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.1e-47 Score=346.80 Aligned_cols=308 Identities=19% Similarity=0.233 Sum_probs=238.3
Q ss_pred CCccccccceeccCCceEEEEEecCC-cceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDD-VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
.|+..|.+++|||||++||+++.+.. .....+++|+.........+..........+.+++| +|++.+ +++
T Consensus 40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-------s~d~~~-l~~ 111 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAW-------VSEKGI-LVA 111 (357)
T ss_dssp CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEE-------ETTTEE-EEE
T ss_pred cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEE-------cCCCCE-EEE
Confidence 58889999999999999999986431 112478888876653222211111112233567777 788764 567
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+.||+|+|||+.+++.... ......+|...|++++|+|++ .+|++|+.|+.|++||
T Consensus 112 s~dg~v~lWd~~~~~~~~~-----------------------~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd 167 (357)
T 4g56_B 112 SDSGAVELWEILEKESLLV-----------------------NKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWD 167 (357)
T ss_dssp ETTSCEEEC--------CC-----------------------CCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEE
T ss_pred ECCCEEEEeeccccceeEE-----------------------EeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEE
Confidence 7899999999987654332 112244799999999999997 5999999999999999
Q ss_pred CCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE--eeeCCeeEEEeCCCCCcEEEEEeC
Q 013827 230 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--AVAADVESLAWDPHAEHSFVVSLE 307 (436)
Q Consensus 230 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~ 307 (436)
+++++.+..+.+|...|++++|++++..++++++.|+.|++||+++.+...... .+...+.+++|+|++..++++|+.
T Consensus 168 ~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~ 247 (357)
T 4g56_B 168 LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE 247 (357)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES
T ss_pred CCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec
Confidence 999999999999999999999999986789999999999999999877654332 456779999999998889999999
Q ss_pred CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEE
Q 013827 308 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF 387 (436)
Q Consensus 308 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 387 (436)
|+.|++||+++. ..+..+..|...|++++|+|++..+|++|+.|++|+|||+++++ .....+|.+.|+
T Consensus 248 d~~i~~wd~~~~---------~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~---~~~~~~H~~~V~ 315 (357)
T 4g56_B 248 TGNVSLVNIKNP---------DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE---VFRDLSHRDFVT 315 (357)
T ss_dssp SSCEEEEESSCG---------GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE---EEEECCCSSCEE
T ss_pred ccceeEEECCCC---------cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc---EeEECCCCCCEE
Confidence 999999999987 66888999999999999999986789999999999999999886 234457999999
Q ss_pred EEEEcC-CCCcEEEEEeCCCcEEEEeCCCCccccccc
Q 013827 388 SVAFSE-DSPFVLAIGGSKGKLEIWDTLSDAGISNRF 423 (436)
Q Consensus 388 ~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (436)
+++|+| ++. +|++++.||+|++|++.+.......+
T Consensus 316 ~vafsP~d~~-~l~s~s~Dg~v~iW~~~~~~~~~~~i 351 (357)
T 4g56_B 316 GVAWSPLDHS-KFTTVGWDHKVLHHHLPSEGRTENLI 351 (357)
T ss_dssp EEEECSSSTT-EEEEEETTSCEEEEECC---------
T ss_pred EEEEeCCCCC-EEEEEcCCCeEEEEECCCCCcccccc
Confidence 999999 677 69999999999999998765554443
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.9e-45 Score=341.76 Aligned_cols=286 Identities=21% Similarity=0.365 Sum_probs=250.6
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEee
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 150 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 150 (436)
+|.+.|.+++|+|++++|++|+.++ .|.+|+...+.....+..|.. .+.+++| +|++++|++|+
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg-----~i~vwd~~~~~~~~~l~~h~~----~V~~v~~-------~~~~~~l~sgs 169 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDA-----TIKVWDYETGDFERTLKGHTD----SVQDISF-------DHSGKLLASCS 169 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSS-----CEEEEETTTCCCCEEECCCSS----CEEEEEE-------CTTSSEEEEEE
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEeccCC----cEEEEEE-------cCCCCEEEEEe
Confidence 6889999999999999999999887 777777766644444444543 3356777 89999999999
Q ss_pred CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 013827 151 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 230 (436)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~ 230 (436)
.||+|+|||+.+.+.+. .+.+|...|.+++|+|++ .+|++|+.|++|++||+
T Consensus 170 ~D~~i~iwd~~~~~~~~---------------------------~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~ 221 (410)
T 1vyh_C 170 ADMTIKLWDFQGFECIR---------------------------TMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEV 221 (410)
T ss_dssp TTSCCCEEETTSSCEEE---------------------------CCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEET
T ss_pred CCCeEEEEeCCCCceeE---------------------------EEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEEC
Confidence 99999999997654332 256899999999999996 59999999999999999
Q ss_pred CCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCC------------
Q 013827 231 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA------------ 298 (436)
Q Consensus 231 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~------------ 298 (436)
.+++++..+.+|...|.++.|+|++ .++++++.|+.|++||+++.........|...+.+++|+|++
T Consensus 222 ~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 300 (410)
T 1vyh_C 222 QTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 300 (410)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred CCCcEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccc
Confidence 9999999999999999999999999 899999999999999999888777677889999999999963
Q ss_pred -------CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 013827 299 -------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 371 (436)
Q Consensus 299 -------~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~ 371 (436)
+.++++|+.|+.|++||++++ ..+..+.+|...|.+++|+|++ .+|++|+.|+.|++||+.++
T Consensus 301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~~---------~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~~ 370 (410)
T 1vyh_C 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTG---------MCLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNK 370 (410)
T ss_dssp -------CCEEEEEETTSEEEEEETTTT---------EEEEEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTS
T ss_pred ccccCCCCCEEEEEeCCCeEEEEECCCC---------ceEEEEECCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC
Confidence 358999999999999999987 6688889999999999999998 89999999999999999887
Q ss_pred CceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 372 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 372 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
+ .+..+.+|...|++++|+|++.+ |++|+.||.|+||+++
T Consensus 371 ~--~~~~~~~h~~~v~~l~~~~~~~~-l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 371 R--CMKTLNAHEHFVTSLDFHKTAPY-VVTGSVDQTVKVWECR 410 (410)
T ss_dssp C--CCEEEECCSSCEEEEEECSSSSC-EEEEETTSEEEEEC--
T ss_pred c--eEEEEcCCCCcEEEEEEcCCCCE-EEEEeCCCcEEEEeCC
Confidence 7 45567789999999999999995 9999999999999863
No 4
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.9e-44 Score=331.15 Aligned_cols=299 Identities=20% Similarity=0.313 Sum_probs=244.2
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
.+|.+.|.+++|+|++++|++|+.|+ .|.+|+.........+..|.. .+.+++| +|++++||+|
T Consensus 63 ~gH~~~V~~~~~sp~~~~l~s~s~D~-----~v~iWd~~~~~~~~~~~~h~~----~v~~~~~-------s~~g~~las~ 126 (380)
T 3iz6_a 63 QGHSGKVYSLDWTPEKNWIVSASQDG-----RLIVWNALTSQKTHAIKLHCP----WVMECAF-------APNGQSVACG 126 (380)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTS-----EEEEEETTTTEEEEEEECCCT----TCCCCEE-------CTTSSEEEEC
T ss_pred cccccEEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCccceEEecCCC----CEEEEEE-------CCCCCEEEEe
Confidence 47899999999999999999999887 888888766532223333322 2344555 9999999999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+.|+.|++|++.+..... ........+.+|...|.++.|+|++...|++|+.|++|++||
T Consensus 127 ~~d~~v~iw~~~~~~~~~--------------------~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd 186 (380)
T 3iz6_a 127 GLDSACSIFNLSSQADRD--------------------GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWD 186 (380)
T ss_dssp CSSSCCEEEECCCCSSCC--------------------CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEEC
T ss_pred eCCCcEEEEECCCCcccc--------------------CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEE
Confidence 999999999997533211 112334456789999999999998667899999999999999
Q ss_pred CCCCeEEEEE-----cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC-CCccceEeeeCCeeEEEeCCCCCcEEE
Q 013827 230 VAAGKCNLTL-----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-THSGFKWAVAADVESLAWDPHAEHSFV 303 (436)
Q Consensus 230 ~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 303 (436)
+.+++.+..+ .+|...|.++.|++.+..+|++|+.|+.|++||++.. ........|...|.+++|+|++ .+++
T Consensus 187 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~ 265 (380)
T 3iz6_a 187 VTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG-QRFG 265 (380)
T ss_dssp TTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS-SEEE
T ss_pred cCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC-CeEE
Confidence 9999988877 6789999999998844489999999999999999854 4555566789999999999987 6899
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccC-------CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeE
Q 013827 304 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 376 (436)
Q Consensus 304 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 376 (436)
+++.|++|++||++++ ..+..+..+. ..+++++|+|++ .+|++|+.||.|++||+..++. .
T Consensus 266 s~s~D~~i~lwd~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~--~ 333 (380)
T 3iz6_a 266 TGSDDGTCRLFDMRTG---------HQLQVYNREPDRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLLAEM--V 333 (380)
T ss_dssp EECSSSCEEEEETTTT---------EEEEEECCCCSSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTTCCE--E
T ss_pred EEcCCCeEEEEECCCC---------cEEEEecccccccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCCCce--E
Confidence 9999999999999987 3344444332 348999999999 8999999999999999988773 3
Q ss_pred Eee----CCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 377 ASR----NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 377 ~~~----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
..+ .+|.+.|++++|+|+|. +|++|+.|+.|+||++...+.
T Consensus 334 ~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 334 LNLGTLQNSHEGRISCLGLSSDGS-ALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp EEECCSCSSCCCCCCEEEECSSSS-EEEEECTTSCEEEEECCSSSS
T ss_pred EEEecccCCCCCceEEEEECCCCC-EEEEeeCCCCEEEEecCCCcc
Confidence 333 57899999999999999 599999999999999987643
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.4e-43 Score=321.56 Aligned_cols=287 Identities=18% Similarity=0.314 Sum_probs=243.4
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
.+|.+.|.+++|+|++++|++++.++ .|.+|+.........+..| ...+.+++| +|++++|++|
T Consensus 52 ~gH~~~v~~~~~s~d~~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~~----~~~v~~~~~-------s~~~~~l~s~ 115 (340)
T 1got_B 52 RGHLAKIYAMHWGTDSRLLLSASQDG-----KLIIWDSYTTNKVHAIPLR----SSWVMTCAY-------APSGNYVACG 115 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTT-----EEEEEETTTCCEEEEEECS----SSCEEEEEE-------CTTSSEEEEE
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCC-----cEEEEECCCCCcceEeecC----CccEEEEEE-------CCCCCEEEEE
Confidence 47889999999999999999999887 8888887665322222222 223456666 8999999999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+.|+.|++|++.+.+.. ......+.+|...|.++.|++++ .+++++.|++|++||
T Consensus 116 ~~d~~v~iw~~~~~~~~-----------------------~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd 170 (340)
T 1got_B 116 GLDNICSIYNLKTREGN-----------------------VRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWD 170 (340)
T ss_dssp ETTCEEEEEETTTCSBS-----------------------CEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEE
T ss_pred eCCCeEEEEECccCCCc-----------------------ceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEE
Confidence 99999999999764321 11223356899999999999984 589999999999999
Q ss_pred CCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCC
Q 013827 230 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG 309 (436)
Q Consensus 230 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg 309 (436)
+.+++.+..+.+|...|.+++|+|++ .++++|+.|+.|++||+++.........|...|.+++|+|++ .++++|+.||
T Consensus 171 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~d~ 248 (340)
T 1got_B 171 IETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG-NAFATGSDDA 248 (340)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS-SEEEEEETTS
T ss_pred CCCCcEEEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCC-CEEEEEcCCC
Confidence 99999999999999999999999999 899999999999999999988777677889999999999987 6899999999
Q ss_pred cEEEEeCCCCCCCCCCCCCcccEEEe--ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEE
Q 013827 310 TIKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF 387 (436)
Q Consensus 310 ~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 387 (436)
.|++||++.. ..+..+. .+...|.+++|+|++ .+|++|+.|+.|++||+.+.+ ....+.+|.+.|.
T Consensus 249 ~v~iwd~~~~---------~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~--~~~~~~~h~~~v~ 316 (340)
T 1got_B 249 TCRLFDLRAD---------QELMTYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKAD--RAGVLAGHDNRVS 316 (340)
T ss_dssp CEEEEETTTT---------EEEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEE
T ss_pred cEEEEECCCC---------cEEEEEccCCcccceEEEEECCCC-CEEEEECCCCeEEEEEcccCc--EeeEeecCCCcEE
Confidence 9999999876 3344443 233579999999999 899999999999999999877 4566789999999
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEe
Q 013827 388 SVAFSEDSPFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 388 ~~~~~~~~~~~l~s~~~dg~i~iwd 412 (436)
+++|+|++.+ |++|+.|+.|+|||
T Consensus 317 ~~~~s~dg~~-l~s~s~D~~i~iWd 340 (340)
T 1got_B 317 CLGVTDDGMA-VATGSWDSFLKIWN 340 (340)
T ss_dssp EEEECTTSSC-EEEEETTSCEEEEC
T ss_pred EEEEcCCCCE-EEEEcCCccEEecC
Confidence 9999999995 99999999999997
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.4e-44 Score=322.76 Aligned_cols=290 Identities=19% Similarity=0.309 Sum_probs=242.9
Q ss_pred CCCCCccccccceeccC----CceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCC
Q 013827 68 KDDEDSEDLEDMTINPN----DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKG 143 (436)
Q Consensus 68 ~~~~~~~~v~~~~~sp~----~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 143 (436)
....|.+.|.+++|+|+ +.+|++|+.|+. ++||.++.........+..|. ..+.+++| ++++
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~---v~vW~~~~~~~~~~~~l~gh~----~~v~~~~~-------~~~~ 92 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDL---VKVWKWRDERLDLQWSLEGHQ----LGVVSVDI-------SHTL 92 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSC---EEEEEEETTEEEEEEEECCCS----SCEEEEEE-------CSSS
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCC---EEEEECCCCCeeeeeeeccCC----CCEEEEEE-------CCCC
Confidence 34589999999999985 568999988863 255554432210001122232 22356666 8999
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCC
Q 013827 144 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK 223 (436)
Q Consensus 144 ~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 223 (436)
.++++|+.|++|++||+.+++.... +..|...+.+++|+|++ .+|++++.||
T Consensus 93 ~~l~s~s~D~~i~lWd~~~~~~~~~---------------------------~~~~~~~~~~~~~spdg-~~l~~g~~dg 144 (321)
T 3ow8_A 93 PIAASSSLDAHIRLWDLENGKQIKS---------------------------IDAGPVDAWTLAFSPDS-QYLATGTHVG 144 (321)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEE---------------------------EECCTTCCCCEEECTTS-SEEEEECTTS
T ss_pred CEEEEEeCCCcEEEEECCCCCEEEE---------------------------EeCCCccEEEEEECCCC-CEEEEEcCCC
Confidence 9999999999999999986544332 34678889999999997 5999999999
Q ss_pred cEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEE
Q 013827 224 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFV 303 (436)
Q Consensus 224 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 303 (436)
.|++||+++++....+..|...|.+++|+|++ .+|++++.|+.|++||+++.+.......|...|.+++|+|++ .+++
T Consensus 145 ~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~-~~l~ 222 (321)
T 3ow8_A 145 KVNIFGVESGKKEYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS-QLLV 222 (321)
T ss_dssp EEEEEETTTCSEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTS-CEEE
T ss_pred cEEEEEcCCCceeEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCC-CEEE
Confidence 99999999999999998899999999999999 899999999999999999888777667788999999999987 6899
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCC
Q 013827 304 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA 383 (436)
Q Consensus 304 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 383 (436)
+++.|+.|++||++.. .....+.+|...|.+++|+|++ .+|++++.|++|++||+++++ .+..+.+|.
T Consensus 223 s~s~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~~~--~~~~~~~h~ 290 (321)
T 3ow8_A 223 TASDDGYIKIYDVQHA---------NLAGTLSGHASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGTRT--CVHTFFDHQ 290 (321)
T ss_dssp EECTTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--EEEEECCCS
T ss_pred EEcCCCeEEEEECCCc---------ceeEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCE--EEEEEcCCC
Confidence 9999999999999877 5677889999999999999998 899999999999999999887 567788899
Q ss_pred CcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 384 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 384 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
+.|.+++|+|++. .|++++.||.|+|||..
T Consensus 291 ~~v~~v~~s~~g~-~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 291 DQVWGVKYNGNGS-KIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SCEEEEEECTTSS-EEEEEETTCCEEEEECC
T ss_pred CcEEEEEECCCCC-EEEEEeCCCeEEEEeCC
Confidence 9999999999999 58999999999999963
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.1e-43 Score=314.24 Aligned_cols=289 Identities=20% Similarity=0.250 Sum_probs=238.1
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEee
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 150 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 150 (436)
.|.+.|.+++|+|++++|++++.++ .|.+|+.........+..|. ....++.| +|++++|++|+
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg-----~v~lWd~~~~~~~~~~~~~~----~~v~~~~~-------~~~~~~l~s~s 74 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSG-----RVELWNYETQVEVRSIQVTE----TPVRAGKF-------IARKNWIIVGS 74 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTS-----EEEEEETTTTEEEEEEECCS----SCEEEEEE-------EGGGTEEEEEE
T ss_pred CCCCceEEEEECCCCCEEEEEcCCC-----cEEEEECCCCceeEEeeccC----CcEEEEEE-------eCCCCEEEEEC
Confidence 6788999999999999999999887 78888877653222233332 22345666 78999999999
Q ss_pred CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 013827 151 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 230 (436)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~ 230 (436)
.|++|++||+.+++... .+.+|...|.+++|+|++ .+|++|+.|++|++||+
T Consensus 75 ~d~~i~vwd~~~~~~~~---------------------------~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~ 126 (304)
T 2ynn_A 75 DDFRIRVFNYNTGEKVV---------------------------DFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNW 126 (304)
T ss_dssp TTSEEEEEETTTCCEEE---------------------------EEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEG
T ss_pred CCCEEEEEECCCCcEEE---------------------------EEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEEC
Confidence 99999999998755433 255899999999999996 59999999999999999
Q ss_pred CCC-eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE-eeeCCeeEEEeCCC-CCcEEEEEeC
Q 013827 231 AAG-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPH-AEHSFVVSLE 307 (436)
Q Consensus 231 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~i~~~~~~~~-~~~~~~~~~~ 307 (436)
+++ .....+.+|...|.+++|+|.++..|++|+.|++|++||++......... .+...+..+.|.|. ...++++++.
T Consensus 127 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~ 206 (304)
T 2ynn_A 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206 (304)
T ss_dssp GGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET
T ss_pred CCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC
Confidence 877 55677889999999999999654899999999999999998776554333 34577899999874 2368999999
Q ss_pred CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEE
Q 013827 308 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF 387 (436)
Q Consensus 308 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 387 (436)
|+.|++||+++. ..+..+.+|...|.+++|+|++ .+|++|+.|++|++||+.+.+ ....+..|...+.
T Consensus 207 D~~i~iWd~~~~---------~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iWd~~~~~--~~~~~~~~~~~~~ 274 (304)
T 2ynn_A 207 DLTIKIWDYQTK---------SCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYK--VEKTLNVGLERSW 274 (304)
T ss_dssp TSEEEEEETTTT---------EEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCC--EEEEECCSSSSEE
T ss_pred CCeEEEEeCCCC---------ccceeeCCCCCCEEEEEECCCC-CEEEEEcCCCeEEEEECCCCc--eeeeccCCCccEE
Confidence 999999999987 6788999999999999999998 899999999999999999887 5667778888999
Q ss_pred EEEEcCCCCcE-EEEEeCCCcEEEEeCCCC
Q 013827 388 SVAFSEDSPFV-LAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 388 ~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~ 416 (436)
+++|+|++... +++|+ +..+.+|++.+.
T Consensus 275 ~~~~~~~~~~~~~asg~-~~g~~~~~~~~~ 303 (304)
T 2ynn_A 275 CIATHPTGRKNYIASGF-DNGFTVLSLGND 303 (304)
T ss_dssp EEEECTTCGGGCEEEEE-TTEEEEEECC--
T ss_pred EEEECCCCCceEEEEec-CCceEEEEeccC
Confidence 99999988533 66555 555888888654
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.8e-42 Score=317.25 Aligned_cols=291 Identities=16% Similarity=0.251 Sum_probs=242.4
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
.+|.+.|.+++|+|++++|++|+.|+ .|.+|+............+ ...+.+++| +|++.+||+|
T Consensus 61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg-----~v~vWd~~~~~~~~~~~~~----~~~v~~~~~-------sp~g~~lasg 124 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKDKRRIVSSSQDG-----KVIVWDSFTTNKEHAVTMP----CTWVMACAY-------APSGCAIACG 124 (354)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTCCEEEEEECS----SSCCCEEEE-------CTTSSEEEEE
T ss_pred cCCCCeEEEEEECCCCCEEEEEeCCC-----eEEEEECCCCCcceEEecC----CCCEEEEEE-------CCCCCEEEEe
Confidence 47899999999999999999999887 8888887655222222222 223455666 9999999999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+.|+.+++|++....... .......+.+|...|.+++|+|++ ..|++++.|++|++||
T Consensus 125 ~~d~~i~v~~~~~~~~~~---------------------~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd 182 (354)
T 2pbi_B 125 GLDNKCSVYPLTFDKNEN---------------------MAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWD 182 (354)
T ss_dssp STTSEEEEEECCCCTTCC---------------------SGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEE
T ss_pred eCCCCEEEEEEecccccc---------------------ccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEe
Confidence 999999999986432211 112223355799999999999996 5899999999999999
Q ss_pred CCCCeEEEEEcccCCCeEEEEEcCCC-CCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCC
Q 013827 230 VAAGKCNLTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED 308 (436)
Q Consensus 230 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d 308 (436)
+++++.+..+.+|...|.+++|+|.. +.+|++|+.|+.|++||+++.........|...|.+++|+|++ .++++++.|
T Consensus 183 ~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D 261 (354)
T 2pbi_B 183 VESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG-DAFASGSDD 261 (354)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETT
T ss_pred CCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCC-CEEEEEeCC
Confidence 99999999999999999999998852 2799999999999999999988777677889999999999987 689999999
Q ss_pred CcEEEEeCCCCCCCCCCCCCcccEEEec--cCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcE
Q 013827 309 GTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAV 386 (436)
Q Consensus 309 g~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 386 (436)
++|++||++.. ..+..+.. +...+.+++|+|++ .+|++|+.|+.|++||+.+++ .+..+.+|.+.|
T Consensus 262 ~~v~lwd~~~~---------~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~--~~~~l~~h~~~v 329 (354)
T 2pbi_B 262 ATCRLYDLRAD---------REVAIYSKESIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLKGS--RVSILFGHENRV 329 (354)
T ss_dssp SCEEEEETTTT---------EEEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCS--EEEEECCCSSCE
T ss_pred CeEEEEECCCC---------cEEEEEcCCCcccceeEEEEeCCC-CEEEEEECCCcEEEEECCCCc--eEEEEECCCCcE
Confidence 99999999876 33334432 33578999999998 899999999999999998887 456678999999
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEe
Q 013827 387 FSVAFSEDSPFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 387 ~~~~~~~~~~~~l~s~~~dg~i~iwd 412 (436)
++++|+|++++ |++|+.||.|+||+
T Consensus 330 ~~l~~spdg~~-l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 330 STLRVSPDGTA-FCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEECTTSSC-EEEEETTSEEEEEC
T ss_pred EEEEECCCCCE-EEEEcCCCCEEecC
Confidence 99999999995 99999999999996
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.1e-42 Score=312.37 Aligned_cols=309 Identities=21% Similarity=0.323 Sum_probs=234.3
Q ss_pred CCcc-ccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 71 EDSE-DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 71 ~~~~-~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
.|.+ .|..++|+|+|++||+++.++ .|.+|+........... ........+.+++| +|++++||+|
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~-----~i~iw~~~~~~~~~~~~-~~~~h~~~v~~~~~-------sp~g~~l~s~ 79 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDR-----RIRIWGTEGDSWICKSV-LSEGHQRTVRKVAW-------SPCGNYLASA 79 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTS-----CEEEEEEETTEEEEEEE-ECSSCSSCEEEEEE-------CTTSSEEEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCC-----eEEEEEcCCCcceeeee-eccccCCcEEEEEE-------CCCCCEEEEE
Confidence 4555 899999999999999999887 55555554431000000 00112233467777 8999999999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+.|++|++|++..... .....+.+|...|.+++|+|++ .+|++|+.|++|++||
T Consensus 80 s~D~~v~iw~~~~~~~-------------------------~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd 133 (345)
T 3fm0_A 80 SFDATTCIWKKNQDDF-------------------------ECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWE 133 (345)
T ss_dssp ETTSCEEEEEECCC-E-------------------------EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEE
T ss_pred ECCCcEEEEEccCCCe-------------------------EEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEE
Confidence 9999999999864321 1223466899999999999996 6999999999999999
Q ss_pred CCCC---eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc--cceEeeeCCeeEEEeCCCCCcEEEE
Q 013827 230 VAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS--GFKWAVAADVESLAWDPHAEHSFVV 304 (436)
Q Consensus 230 ~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~ 304 (436)
+.++ +++..+.+|...|.+++|+|++ .+|++++.|+.|++||.+..... .....|...|.+++|+|++ .+|++
T Consensus 134 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~l~s 211 (345)
T 3fm0_A 134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSG-QRLAS 211 (345)
T ss_dssp ECTTSCEEEEEEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTS-SEEEE
T ss_pred CCCCCCeEEEEEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCC-CEEEE
Confidence 9875 4466788899999999999999 89999999999999999876432 3455688999999999987 68999
Q ss_pred EeCCCcEEEEeCCCCCCCCCC------CCCcccEEEec-cCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc----
Q 013827 305 SLEDGTIKGFDIRTAKSDPDS------TSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP---- 373 (436)
Q Consensus 305 ~~~dg~i~i~d~~~~~~~~~~------~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~---- 373 (436)
++.|++|++||.......... .....+..+.+ |...|.+++|+|++ ..|++++.|+.|++|+......
T Consensus 212 ~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~ 290 (345)
T 3fm0_A 212 CSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT-GALATACGDDAIRVFQEDPNSDPQQP 290 (345)
T ss_dssp EETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT-CCEEEEETTSCEEEEEECTTSCTTSC
T ss_pred EeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC-CEEEEEeCCCeEEEEEeCCCCCccee
Confidence 999999999997543221110 01122334444 88899999999998 8999999999999999875421
Q ss_pred e---eEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 374 S---CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 374 ~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
. ......+|...|++++|+|++..+|++|+.||.|++|++.+++.+..
T Consensus 291 ~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 291 TFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp CEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred eEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 1 12234578999999999999865799999999999999998876543
No 10
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-42 Score=323.66 Aligned_cols=341 Identities=17% Similarity=0.228 Sum_probs=263.2
Q ss_pred Hhhcccceeeec----------------cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceec
Q 013827 19 LYHSCFRCHKIS----------------NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTIN 82 (436)
Q Consensus 19 ~~~~~~~~~~~~----------------~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 82 (436)
.+.++.|+|+.. +.|++++||++...... .+.. ...|.+.|.+++|+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--------------~~~~---~~~~~~~v~~~~~s 76 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--------------KPIA---SLQVDSKFNDLDWS 76 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--------------SCSC---CCCCSSCEEEEEEC
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC--------------cEEE---EEecCCceEEEEEC
Confidence 356788998865 57899999988755421 1111 22467889999999
Q ss_pred cCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCC-CcEEEEeeCCCcEEEEeCC
Q 013827 83 PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLD 161 (436)
Q Consensus 83 p~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~vw~~~ 161 (436)
|++++|++++.++ .|.+|+.............-......+.+++| +|+ +++|++|+.||.|++||+.
T Consensus 77 ~~~~~l~~~~~dg-----~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~-------~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 77 HNNKIIAGALDNG-----SLELYSTNEANNAINSMARFSNHSSSVKTVKF-------NAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp SSSSCEEEEESSS-----CEEEECCSSTTSCCCEEEECCCSSSCCCEEEE-------CSSSTTBEEEECSSSCEEBCBTT
T ss_pred CCCCeEEEEccCC-----eEEEeecccccccccchhhccCCccceEEEEE-------cCCCCCEEEEEcCCCeEEEEECC
Confidence 9999999998886 66666665511101011111112234467777 787 8999999999999999998
Q ss_pred CCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcc
Q 013827 162 VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH 241 (436)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 241 (436)
+.+..... ........+.+|...|.+++|+|++..+|++++.||.|++||+++++.+..+..
T Consensus 145 ~~~~~~~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 206 (416)
T 2pm9_A 145 KCTESPSN------------------YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSY 206 (416)
T ss_dssp TTSSCTTT------------------CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECC
T ss_pred CCcccccc------------------ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEec
Confidence 76521100 000111224579999999999999667999999999999999999999988877
Q ss_pred c------CCCeEEEEEcCCCCCEEEEEECCC---cEEEEecCCCC-CccceE-eeeCCeeEEEeCCCCCcEEEEEeCCCc
Q 013827 242 H------TDKVQAVAWNHHSPQILLSGSFDR---SVVMKDARIST-HSGFKW-AVAADVESLAWDPHAEHSFVVSLEDGT 310 (436)
Q Consensus 242 ~------~~~v~~~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~-~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~dg~ 310 (436)
+ ...|.+++|+|++..++++++.|+ .|++||+++.. ...... .|...+.+++|+|+++.++++++.|+.
T Consensus 207 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~ 286 (416)
T 2pm9_A 207 TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT 286 (416)
T ss_dssp CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE
T ss_pred cccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC
Confidence 6 789999999999867999999999 99999999864 444444 688999999999944478999999999
Q ss_pred EEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEE-------------
Q 013827 311 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA------------- 377 (436)
Q Consensus 311 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------- 377 (436)
|++||+++. +.+..+..|...|.+++|+|+++.+|++++.|+.|++||+.+.......
T Consensus 287 v~~wd~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 357 (416)
T 2pm9_A 287 VLLWNPESA---------EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETD 357 (416)
T ss_dssp EEEECSSSC---------CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------
T ss_pred EEEeeCCCC---------ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccc
Confidence 999999987 6688889999999999999998789999999999999999875421110
Q ss_pred --ee------------------CCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 378 --SR------------------NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 378 --~~------------------~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
.. ..|..++.+++|+|+|+ +|++++.|+.|+||++.+.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 358 FWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK-LVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ---------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE-EECBCTTSSCBCCBCCCCC
T ss_pred ccccccccccccccccccccCCccccCCccceEEeeCCe-EEEEeCCCCeEEEEEeccC
Confidence 00 11566788999999999 5999999999999999865
No 11
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.8e-41 Score=314.11 Aligned_cols=298 Identities=22% Similarity=0.333 Sum_probs=233.7
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccc--------------cCcCcceeecccCC
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHII--------------IPAFPLCMAWLDCP 136 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 136 (436)
+|.+.|.+++|+|||++||++.. + .+.+|+...+.....+..+... ......+++|
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~~-~-----~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~---- 131 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGCN-K-----TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF---- 131 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEECB-S-----CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE----
T ss_pred CCCCEEEEEEECCCCCEEEEEcC-C-----cEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEE----
Confidence 58889999999999999999863 3 5566666554222112111100 0112345666
Q ss_pred CCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEE
Q 013827 137 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 216 (436)
Q Consensus 137 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 216 (436)
+|++++||+|+.|+.|+|||+.+++.. ..+.+|...|.+++|+|++ .+|
T Consensus 132 ---s~dg~~l~s~~~d~~i~iwd~~~~~~~---------------------------~~~~~h~~~v~~~~~~p~~-~~l 180 (393)
T 1erj_A 132 ---SPDGKFLATGAEDRLIRIWDIENRKIV---------------------------MILQGHEQDIYSLDYFPSG-DKL 180 (393)
T ss_dssp ---CTTSSEEEEEETTSCEEEEETTTTEEE---------------------------EEECCCSSCEEEEEECTTS-SEE
T ss_pred ---CCCCCEEEEEcCCCeEEEEECCCCcEE---------------------------EEEccCCCCEEEEEEcCCC-CEE
Confidence 999999999999999999999764332 2356899999999999997 599
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcC-CCCCEEEEEECCCcEEEEecCCCCCccce-------EeeeCC
Q 013827 217 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH-HSPQILLSGSFDRSVVMKDARISTHSGFK-------WAVAAD 288 (436)
Q Consensus 217 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-------~~~~~~ 288 (436)
++++.|++|++||+.++++...+. +...+.+++|+| ++ .++++++.|+.|++||+++....... ..|...
T Consensus 181 ~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~ 258 (393)
T 1erj_A 181 VSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS 258 (393)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTC-CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSC
T ss_pred EEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCC-CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCC
Confidence 999999999999999999887776 567899999999 56 89999999999999999887654433 357788
Q ss_pred eeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCC---CCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 013827 289 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS---TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL 365 (436)
Q Consensus 289 i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~i 365 (436)
|.+++|+|++ .++++++.|+.|++||++........ ........+.+|...|.+++|+|++ .+|++|+.|+.|++
T Consensus 259 v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~i 336 (393)
T 1erj_A 259 VYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLF 336 (393)
T ss_dssp EEEEEECTTS-SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEE
T ss_pred EEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC-CEEEEEeCCCeEEE
Confidence 9999999987 68999999999999999875321110 0123456778899999999999998 89999999999999
Q ss_pred EECCCCCceeEEeeCCCCCcEEEEEEcC------CCCcEEEEEeCCCcEEEEeCCCC
Q 013827 366 WDLSNNQPSCIASRNPKAGAVFSVAFSE------DSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 366 wd~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
||+.+++ .+..+.+|...|.+++|++ ++. +|++|+.||.|+||++...
T Consensus 337 wd~~~~~--~~~~l~~h~~~v~~v~~~~~~~~~p~~~-~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 337 WDKKSGN--PLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EETTTCC--EEEEEECCSSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEEEEEEEC
T ss_pred EECCCCe--EEEEECCCCCCEEEEEecCCcCcCCCCC-EEEEECCCCcEEECccccc
Confidence 9999987 4567788999999999986 566 6999999999999998653
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8e-41 Score=328.54 Aligned_cols=327 Identities=14% Similarity=0.117 Sum_probs=256.1
Q ss_pred hcccceeeec----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEEecCC
Q 013827 21 HSCFRCHKIS----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDD 96 (436)
Q Consensus 21 ~~~~~~~~~~----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~ 96 (436)
.+..|+|+++ ..++++++|++...... ....+|.+.|.+++|+|+|++||+|+.++
T Consensus 22 ~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~-------------------~~~~~h~~~v~~~~~spdg~~lasg~~d~- 81 (611)
T 1nr0_A 22 VVLGNTPAGDKIQYCNGTSVYTVPVGSLTDT-------------------EIYTEHSHQTTVAKTSPSGYYCASGDVHG- 81 (611)
T ss_dssp CCCEECTTSSEEEEEETTEEEEEETTCSSCC-------------------EEECCCSSCEEEEEECTTSSEEEEEETTS-
T ss_pred eEEeeCCCCCEEEeCCCCEEEEecCCCcccC-------------------eEecCCCCceEEEEECCCCcEEEEEeCCC-
Confidence 3455777765 55789999987543321 01136788999999999999999999887
Q ss_pred cceeEEEEEecCCCCCCc--eeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCC----CcEEEEeCCCCCCCccee
Q 013827 97 VSHLEVYILEESDGGDPN--LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME----PAIEIWDLDVIDEVQPHV 170 (436)
Q Consensus 97 ~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d----g~i~vw~~~~~~~~~~~~ 170 (436)
.|.+|+........ .+..|. ..+.+++| +|++++||+++.+ +.|++||.. +..
T Consensus 82 ----~v~lWd~~~~~~~~~~~~~~~~----~~v~~v~f-------s~dg~~l~~~~~~~~~~~~v~~wd~~--~~~---- 140 (611)
T 1nr0_A 82 ----NVRIWDTTQTTHILKTTIPVFS----GPVKDISW-------DSESKRIAAVGEGRERFGHVFLFDTG--TSN---- 140 (611)
T ss_dssp ----EEEEEESSSTTCCEEEEEECSS----SCEEEEEE-------CTTSCEEEEEECCSSCSEEEEETTTC--CBC----
T ss_pred ----CEEEeECCCCcceeeEeecccC----CceEEEEE-------CCCCCEEEEEECCCCceeEEEEeeCC--CCc----
Confidence 77777765432211 122222 33456777 9999999998865 468888743 221
Q ss_pred eecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEE
Q 013827 171 ILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVA 250 (436)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~ 250 (436)
..+.+|...|++++|+|++...|++|+.|++|++||..+++....+.+|...|.+++
T Consensus 141 -----------------------~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~ 197 (611)
T 1nr0_A 141 -----------------------GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVR 197 (611)
T ss_dssp -----------------------BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEE
T ss_pred -----------------------ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEE
Confidence 125689999999999999766799999999999999999999999999999999999
Q ss_pred EcCCCCCEEEEEECCCcEEEEecCCCCCccceE-------eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCC
Q 013827 251 WNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP 323 (436)
Q Consensus 251 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~ 323 (436)
|+|++ .+|++++.|++|++||+.+++...... .|...|.+++|+|++ .++++++.|++|++||+++++...
T Consensus 198 fspdg-~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~ 275 (611)
T 1nr0_A 198 YNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEK 275 (611)
T ss_dssp ECTTS-SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE
T ss_pred ECCCC-CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceee
Confidence 99999 899999999999999998876554332 688899999999987 689999999999999998753211
Q ss_pred CC----------------------------------CCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 013827 324 DS----------------------------------TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 369 (436)
Q Consensus 324 ~~----------------------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~ 369 (436)
.. ........+.+|...|++++|+|++ .+|++++.|++|++||+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 276 TIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDIS 354 (611)
T ss_dssp EEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETT
T ss_pred eecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECC
Confidence 00 0011234567899999999999998 899999999999999999
Q ss_pred CCCceeEEee-CCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 370 NNQPSCIASR-NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 370 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
+++. ...+ ..|...|.+++|++++. +++++.|+.+++|++..+..
T Consensus 355 ~~~~--~~~~~~~h~~~v~~~~~s~~~~--l~s~s~d~~v~~w~~~~~~~ 400 (611)
T 1nr0_A 355 TGIS--NRVFPDVHATMITGIKTTSKGD--LFTVSWDDHLKVVPAGGSGV 400 (611)
T ss_dssp TCCE--EECSSCSCSSCEEEEEECTTSC--EEEEETTTEEEEECSSSSSS
T ss_pred CCce--eeecccCCcceEEEEEECCCCc--EEEEEcCCceEEeecCCccc
Confidence 8873 3333 56888999999998874 78899999999999877543
No 13
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.5e-41 Score=307.56 Aligned_cols=294 Identities=17% Similarity=0.171 Sum_probs=226.1
Q ss_pred Hhhcccceeeec----cCCCCcceeeecceeeccccccceeccCCCCCCcc--cCCCCCCccccccceeccCCceEEEEE
Q 013827 19 LYHSCFRCHKIS----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYL--KDKDDEDSEDLEDMTINPNDAVIVCAR 92 (436)
Q Consensus 19 ~~~~~~~~~~~~----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~~~~ 92 (436)
.+.++.|+++++ ++|.|+|+|+...... ......+.. ......++..|.+++|+|++ .|++|+
T Consensus 32 ~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s 100 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGASSLSGRCWAGSLWLF----------KDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVAS 100 (344)
T ss_dssp EEEEEEECTTSCEEEEEECCSSSCCCEEEEEE----------SSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCceEEeeceeeee----------ccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEE
Confidence 356778888877 6689999997432221 110001111 01112345679999999996 466777
Q ss_pred ecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeee
Q 013827 93 NEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVIL 172 (436)
Q Consensus 93 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~ 172 (436)
.++ .|.+|+...++...............+.|++| +|++++|++|+.||+|++||+.+++.+.
T Consensus 101 ~dg-----~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~-------spdg~~l~sgs~d~~i~iwd~~~~~~~~----- 163 (344)
T 4gqb_B 101 DSG-----AVELWELDENETLIVSKFCKYEHDDIVSTVSV-------LSSGTQAVSGSKDICIKVWDLAQQVVLS----- 163 (344)
T ss_dssp TTS-----EEEEEEECTTSSCEEEEEEEECCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEETTTTEEEE-----
T ss_pred CCC-----EEEEEeccCCCceeEeeccccCCCCCEEEEEE-------CCCCCEEEEEeCCCeEEEEECCCCcEEE-----
Confidence 776 66677666553333222111112234467777 8999999999999999999998654433
Q ss_pred cccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEc--ccCCCeEEEE
Q 013827 173 GGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE--HHTDKVQAVA 250 (436)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~~ 250 (436)
.+.+|...|++++|+|++..+|++|+.|++|++||+++++....+. .+...+.+++
T Consensus 164 ----------------------~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 221 (344)
T 4gqb_B 164 ----------------------SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA 221 (344)
T ss_dssp ----------------------EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEE
T ss_pred ----------------------EEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeee
Confidence 3668999999999999987799999999999999999998887774 4566799999
Q ss_pred EcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcc
Q 013827 251 WNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQS 330 (436)
Q Consensus 251 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 330 (436)
|+|++..+|++|+.|+.|++||+++.+....+..|...|++++|+|++..++++|+.|++|++||++++ +
T Consensus 222 ~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---------~- 291 (344)
T 4gqb_B 222 WHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---------E- 291 (344)
T ss_dssp ECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC---------E-
T ss_pred ecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---------c-
Confidence 999876899999999999999999998888788899999999999998788999999999999999876 3
Q ss_pred cEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 013827 331 SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 331 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
+..+.+|...|++++|+|++..+|++++.|++|++|++.+..
T Consensus 292 ~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 292 LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 456789999999999999987789999999999999998754
No 14
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-40 Score=299.28 Aligned_cols=287 Identities=21% Similarity=0.358 Sum_probs=238.0
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
.+|.+.|.+++|+|++++|++++.++ .|.+|+....+....+..|.. ...+++| +|++++|++|
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~h~~----~v~~~~~-------~~~~~~l~s~ 83 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADK-----LIKIWGAYDGKFEKTISGHKL----GISDVAW-------SSDSNLLVSA 83 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEEECCCSS----CEEEEEE-------CTTSSEEEEE
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCC-----eEEEEeCCCcccchhhccCCC----ceEEEEE-------cCCCCEEEEE
Confidence 47889999999999999999999887 677777766533333333332 2356777 8999999999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+.||.|++||+.+++... .+.+|...|.+++|+|++ .+|++|+.|+.|++||
T Consensus 84 ~~d~~i~vwd~~~~~~~~---------------------------~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd 135 (312)
T 4ery_A 84 SDDKTLKIWDVSSGKCLK---------------------------TLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWD 135 (312)
T ss_dssp ETTSEEEEEETTTCCEEE---------------------------EEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEE
T ss_pred CCCCEEEEEECCCCcEEE---------------------------EEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEE
Confidence 999999999998654432 255799999999999996 6999999999999999
Q ss_pred CCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE-eeeCCeeEEEeCCCCCcEEEEEeCC
Q 013827 230 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLED 308 (436)
Q Consensus 230 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~d 308 (436)
+++++.+..+..|..+|.+++|+|++ .++++++.|+.|++||+++.+...... .+...+..++|+|++ .++++++.|
T Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d 213 (312)
T 4ery_A 136 VKTGKCLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLD 213 (312)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTS-SEEEEEETT
T ss_pred CCCCEEEEEecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCC-CEEEEEcCC
Confidence 99999999999999999999999999 899999999999999999877654332 345679999999987 689999999
Q ss_pred CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeE--EEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcE
Q 013827 309 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC--TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAV 386 (436)
Q Consensus 309 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 386 (436)
+.|++||+++. ..+..+.+|..... ...+++.++.+|++|+.||.|++||+.+.+ .+..+.+|...|
T Consensus 214 ~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v 282 (312)
T 4ery_A 214 NTLKLWDYSKG---------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE--IVQKLQGHTDVV 282 (312)
T ss_dssp TEEEEEETTTT---------EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC--EEEEECCCSSCE
T ss_pred CeEEEEECCCC---------cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch--hhhhhhccCCcE
Confidence 99999999987 55677777765433 234454334899999999999999999887 566788999999
Q ss_pred EEEEEcCCCCcEEEEEe--CCCcEEEEeCC
Q 013827 387 FSVAFSEDSPFVLAIGG--SKGKLEIWDTL 414 (436)
Q Consensus 387 ~~~~~~~~~~~~l~s~~--~dg~i~iwd~~ 414 (436)
.+++|+|+++ ++++++ .|+.|++|+..
T Consensus 283 ~~~~~~p~~~-~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 283 ISTACHPTEN-IIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEEECSSSS-EEEEEECTTTCCEEEEECC
T ss_pred EEEeecCcCC-ceEEEEccCCccEEEecCC
Confidence 9999999999 588776 69999999864
No 15
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-40 Score=300.67 Aligned_cols=305 Identities=18% Similarity=0.290 Sum_probs=221.4
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEee
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 150 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 150 (436)
.|.+.|.+++|+|+ +|++++.++ .|.+|+...+................+.+++| +|++++||+|+
T Consensus 12 ~h~~~v~~~~~s~~--~las~~~D~-----~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~-------sp~~~~las~s 77 (330)
T 2hes_X 12 LYKEKIWSFDFSQG--ILATGSTDR-----KIKLVSVKYDDFTLIDVLDETAHKKAIRSVAW-------RPHTSLLAAGS 77 (330)
T ss_dssp CCSSCEEEEEEETT--EEEEEESSS-----CEEEEECSSSCCEEEEEECTTCCCSCEEEEEE-------CTTSSEEEEEE
T ss_pred cCCCceeeeccCCC--EEEEEcCCC-----EEEEEEecCCCeEEEEEEecCCccCCEEEEEE-------CCCCCEEEEEe
Confidence 68889999999998 888888886 66666655431111111101112233467777 89999999999
Q ss_pred CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 013827 151 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 230 (436)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~ 230 (436)
.|++|+||++....... ........+.+|...|.+++|+|++ .+|++|+.|++|++||+
T Consensus 78 ~D~~v~iw~~~~~~~~~--------------------~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~ 136 (330)
T 2hes_X 78 FDSTVSIWAKEESADRT--------------------FEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWET 136 (330)
T ss_dssp TTSCEEEEEC---------------------------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEEC
T ss_pred CCCcEEEEEcccCcCcc--------------------ccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEec
Confidence 99999999986321100 0122334467899999999999997 59999999999999999
Q ss_pred CC----CeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC--CCccceEeeeCCeeEEEeCCCC-CcEEE
Q 013827 231 AA----GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--THSGFKWAVAADVESLAWDPHA-EHSFV 303 (436)
Q Consensus 231 ~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~i~~~~~~~~~-~~~~~ 303 (436)
.. .+++..+.+|...|.+++|+|++ .+|++++.|++|++||.+.. ........|...|.+++|+|++ ...++
T Consensus 137 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 215 (330)
T 2hes_X 137 DESGEEYECISVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC 215 (330)
T ss_dssp CTTCCCCEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred cCCCCCeEEEEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence 43 25677889999999999999999 89999999999999998765 3444455788999999999973 35799
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec-cCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEE-eeCC
Q 013827 304 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA-SRNP 381 (436)
Q Consensus 304 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~ 381 (436)
+++.|++|++||++....... ........+.. |...|.+++|+++ .+|++++.|+.|++||..+++..... ...+
T Consensus 216 s~s~D~~v~iw~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~v~~s~~--~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~ 292 (330)
T 2hes_X 216 SGSDDSTVRVWKYMGDDEDDQ-QEWVCEAILPDVHKRQVYNVAWGFN--GLIASVGADGVLAVYEEVDGEWKVFAKRALC 292 (330)
T ss_dssp EEETTSCEEEEEEEEECTTSC-EEEEEEEECCSCCSSCEEEEEECTT--SCEEEEETTSCEEEEEEETTEEEEEEEESCT
T ss_pred EEeCCCeEEEEEecCCCcccc-ceeEEeeecccccccceEEEEEcCC--CEEEEEeCCCEEEEEEcCCCceEEEeccccc
Confidence 999999999999976421100 00012233333 8899999999974 48999999999999999876432332 3356
Q ss_pred CCC-cEEEEEEcC--CCCcEEEEEeCCCcEEEEeCCC
Q 013827 382 KAG-AVFSVAFSE--DSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 382 ~~~-~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
|.. .|.+++|+| ++. +|++|+.||.|+|||+..
T Consensus 293 h~~~~v~~v~~~~~~~~~-~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 293 HGVYEINVVKWLELNGKT-ILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTTSCEEEEEEC-----C-CEEEEETTSEEEEEEC--
T ss_pred cccceEEEEEEecCCCce-EEEEecCCCcEEEEEecc
Confidence 776 899999999 677 599999999999999865
No 16
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.7e-40 Score=296.50 Aligned_cols=249 Identities=19% Similarity=0.300 Sum_probs=216.0
Q ss_pred cceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEE
Q 013827 127 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 206 (436)
Q Consensus 127 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 206 (436)
+.+++| +|++++|++|+.||+|++||+.++.... .+..|...|.++
T Consensus 16 V~~~~f-------sp~~~~l~s~~~dg~v~lWd~~~~~~~~---------------------------~~~~~~~~v~~~ 61 (304)
T 2ynn_A 16 VKGIDF-------HPTEPWVLTTLYSGRVELWNYETQVEVR---------------------------SIQVTETPVRAG 61 (304)
T ss_dssp EEEEEE-------CSSSSEEEEEETTSEEEEEETTTTEEEE---------------------------EEECCSSCEEEE
T ss_pred eEEEEE-------CCCCCEEEEEcCCCcEEEEECCCCceeE---------------------------EeeccCCcEEEE
Confidence 356666 9999999999999999999998654332 245789999999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc-cceEee
Q 013827 207 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAV 285 (436)
Q Consensus 207 ~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~ 285 (436)
+|+|++ ++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++ .+|++|+.|++|++||+++.... .....|
T Consensus 62 ~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h 139 (304)
T 2ynn_A 62 KFIARK-NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGH 139 (304)
T ss_dssp EEEGGG-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEECCC
T ss_pred EEeCCC-CEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhhccc
Confidence 999996 699999999999999999999999999999999999999999 89999999999999999876443 345578
Q ss_pred eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE-eccCCCeEEEEecC--CCCCEEEEEeCCCc
Q 013827 286 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNP--LVPNLLATGSTDKM 362 (436)
Q Consensus 286 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p--~~~~~l~~~~~d~~ 362 (436)
...|.+++|+|.++..+++|+.|+.|++||++.. .+...+ ..|...+..+.|+| ++ .+|++|+.|++
T Consensus 140 ~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~D~~ 209 (304)
T 2ynn_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS---------TPNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLT 209 (304)
T ss_dssp CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCS---------SCSEEEECCCTTCEEEEEECCSTTC-CEEEEEETTSE
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC---------CccceeccCCcCcEEEEEEEEcCCC-CEEEEEcCCCe
Confidence 8999999999976689999999999999999876 333333 45668899999987 44 79999999999
Q ss_pred EEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccccc
Q 013827 363 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 424 (436)
Q Consensus 363 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (436)
|++||+++++ .+..+.+|...|.+++|+|+++ +|++|+.||.|++||+.+++.+...-.
T Consensus 210 i~iWd~~~~~--~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~ 268 (304)
T 2ynn_A 210 IKIWDYQTKS--CVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTLNV 268 (304)
T ss_dssp EEEEETTTTE--EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred EEEEeCCCCc--cceeeCCCCCCEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeeccC
Confidence 9999999876 5677889999999999999999 699999999999999999887766543
No 17
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.8e-40 Score=296.92 Aligned_cols=288 Identities=17% Similarity=0.285 Sum_probs=230.1
Q ss_pred CCCccccccceeccCC-ceEEEEEecCCcceeEEEEEecCCCCC-----CceeeecccccCcCcceeecccCCCCCCCCC
Q 013827 70 DEDSEDLEDMTINPND-AVIVCARNEDDVSHLEVYILEESDGGD-----PNLYVHHHIIIPAFPLCMAWLDCPLKDREKG 143 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~-~~l~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 143 (436)
.+|.+.|.+++|+|++ ++|++++.|+ .|.+|+...... ...+..|. ..+.++.| +|++
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~-----~v~~W~~~~~~~~~~~~~~~~~~h~----~~v~~~~~-------s~dg 77 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDK-----TLISWKLTGDDQKFGVPVRSFKGHS----HIVQDCTL-------TADG 77 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTS-----EEEEEEEEEETTEEEEEEEEEECCS----SCEEEEEE-------CTTS
T ss_pred ccccceEEEEEccCCCccEEEEecCCc-----cEEEecCCCCCccccccceEEeCCc----ccEEEEEE-------CCCC
Confidence 4799999999999976 7899998886 555555432211 11222332 23345666 8999
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCC
Q 013827 144 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK 223 (436)
Q Consensus 144 ~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 223 (436)
++|++|+.|++|+|||+.+++... .+.+|...|.+++|+|++ .+|++|+.|+
T Consensus 78 ~~l~s~s~D~~v~~wd~~~~~~~~---------------------------~~~~h~~~v~~~~~~~~~-~~l~s~s~D~ 129 (319)
T 3frx_A 78 AYALSASWDKTLRLWDVATGETYQ---------------------------RFVGHKSDVMSVDIDKKA-SMIISGSRDK 129 (319)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEE---------------------------EEECCSSCEEEEEECTTS-CEEEEEETTS
T ss_pred CEEEEEeCCCEEEEEECCCCCeeE---------------------------EEccCCCcEEEEEEcCCC-CEEEEEeCCC
Confidence 999999999999999998654432 255899999999999996 5999999999
Q ss_pred cEEEEeCCCCeEEEEEcccCCCeEEEEEcCCC-----CCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCC
Q 013827 224 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHS-----PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA 298 (436)
Q Consensus 224 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~ 298 (436)
+|++||++ ++++..+.+|...|.++.|.|.. ...+++++.|+.|++||+++.........|...|.+++|+|++
T Consensus 130 ~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g 208 (319)
T 3frx_A 130 TIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208 (319)
T ss_dssp CEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTS
T ss_pred eEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCC
Confidence 99999986 56678888999999999999854 2489999999999999999887766677889999999999987
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEe
Q 013827 299 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 378 (436)
Q Consensus 299 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 378 (436)
.++++++.||.|++||+++. +.+..+.. ...|.+++|+|++ .+|++++.+ .+++|++..........
T Consensus 209 -~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~-~~~v~~~~~sp~~-~~la~~~~~-~i~v~~~~~~~~~~~~~ 275 (319)
T 3frx_A 209 -TLIASAGKDGEIMLWNLAAK---------KAMYTLSA-QDEVFSLAFSPNR-YWLAAATAT-GIKVFSLDPQYLVDDLR 275 (319)
T ss_dssp -SEEEEEETTCEEEEEETTTT---------EEEEEEEC-CSCEEEEEECSSS-SEEEEEETT-EEEEEEETTEEEEEEEC
T ss_pred -CEEEEEeCCCeEEEEECCCC---------cEEEEecC-CCcEEEEEEcCCC-CEEEEEcCC-CcEEEEeCcCeeeeccC
Confidence 68999999999999999987 55666654 5689999999998 888887755 59999998765222111
Q ss_pred e------CCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 379 R------NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 379 ~------~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
. ..|...+.+++|+|+|+ +|++|+.||.|+|||+.++
T Consensus 276 ~~~~~~~~~~~~~v~~~~~spdg~-~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 276 PEFAGYSKAAEPHAVSLAWSADGQ-TLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCCTTCCGGGCCCEEEEEECTTSS-EEEEEETTSCEEEEEEEEC
T ss_pred ccccccccCcCcceeEEEECCCCC-EEEEeecCceEEEEEEeec
Confidence 1 12456799999999999 4899999999999999764
No 18
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.5e-40 Score=323.24 Aligned_cols=293 Identities=19% Similarity=0.284 Sum_probs=239.1
Q ss_pred CccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeC
Q 013827 72 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 151 (436)
Q Consensus 72 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 151 (436)
+.+.+.+++|+|||++|+++.. + .+.+|+.........+..|... +.+++| +|+|++||+|+.
T Consensus 17 ~~g~~~~~~~spdg~~l~~~~~-~-----~v~l~~~~~~~~~~~~~~h~~~----v~~~~~-------spdg~~lasg~~ 79 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDKIQYCNG-T-----SVYTVPVGSLTDTEIYTEHSHQ----TTVAKT-------SPSGYYCASGDV 79 (611)
T ss_dssp CTTCCCCCEECTTSSEEEEEET-T-----EEEEEETTCSSCCEEECCCSSC----EEEEEE-------CTTSSEEEEEET
T ss_pred ccCceeEEeeCCCCCEEEeCCC-C-----EEEEecCCCcccCeEecCCCCc----eEEEEE-------CCCCcEEEEEeC
Confidence 3567889999999999999863 3 7778887665555555555543 356666 999999999999
Q ss_pred CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCC----CcEEE
Q 013827 152 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD----KQVKI 227 (436)
Q Consensus 152 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----g~v~v 227 (436)
||+|+|||+.+++... ...+.+|...|.+++|+|++ .+|++++.+ +.|++
T Consensus 80 d~~v~lWd~~~~~~~~-------------------------~~~~~~~~~~v~~v~fs~dg-~~l~~~~~~~~~~~~v~~ 133 (611)
T 1nr0_A 80 HGNVRIWDTTQTTHIL-------------------------KTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFL 133 (611)
T ss_dssp TSEEEEEESSSTTCCE-------------------------EEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEE
T ss_pred CCCEEEeECCCCccee-------------------------eEeecccCCceEEEEECCCC-CEEEEEECCCCceeEEEE
Confidence 9999999986543221 12245799999999999997 478887765 36777
Q ss_pred EeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeC
Q 013827 228 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE 307 (436)
Q Consensus 228 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 307 (436)
|| .++....+.+|...|.+++|+|+++..|++++.|++|++||..+.+....+..|...|.+++|+|++ .++++++.
T Consensus 134 wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg-~~las~s~ 210 (611)
T 1nr0_A 134 FD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG-SLFASTGG 210 (611)
T ss_dssp TT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS-SEEEEEET
T ss_pred ee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC-CEEEEEEC
Confidence 77 4566677899999999999999985579999999999999988776666666789999999999987 68999999
Q ss_pred CCcEEEEeCCCCCCCCCCCCCcccEEEe-------ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCcee-----
Q 013827 308 DGTIKGFDIRTAKSDPDSTSQQSSFTLH-------AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC----- 375 (436)
Q Consensus 308 dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~----- 375 (436)
|++|++||+.++ .....+. +|...|.+++|+|++ .+|++++.|++|++||+.+++...
T Consensus 211 D~~i~lwd~~~g---------~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~ 280 (611)
T 1nr0_A 211 DGTIVLYNGVDG---------TKTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVG 280 (611)
T ss_dssp TSCEEEEETTTC---------CEEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCcEEEEECCCC---------cEeeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence 999999999876 3344442 799999999999998 899999999999999998764321
Q ss_pred ------------------------------------EEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccc
Q 013827 376 ------------------------------------IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 419 (436)
Q Consensus 376 ------------------------------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (436)
...+.+|...|++++|+|+|+ .|++++.|+.|++||+.+++..
T Consensus 281 ~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~ 359 (611)
T 1nr0_A 281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISN 359 (611)
T ss_dssp SSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEE
T ss_pred CCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCcee
Confidence 223457889999999999999 5999999999999999988765
Q ss_pred cc
Q 013827 420 SN 421 (436)
Q Consensus 420 ~~ 421 (436)
..
T Consensus 360 ~~ 361 (611)
T 1nr0_A 360 RV 361 (611)
T ss_dssp EC
T ss_pred ee
Confidence 43
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.9e-40 Score=324.45 Aligned_cols=308 Identities=23% Similarity=0.346 Sum_probs=249.6
Q ss_pred hhcccceeeec-----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEEec
Q 013827 20 YHSCFRCHKIS-----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNE 94 (436)
Q Consensus 20 ~~~~~~~~~~~-----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~ 94 (436)
+.++.|+|+.+ +.|+++++|+.+...+. ....|...|.+++|+|++++|++++.+
T Consensus 265 v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~--------------------~~~~h~~~v~~~~~~~~~~~l~t~~~d 324 (577)
T 2ymu_A 265 VNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQ--------------------TLTGHSSSVWGVAFSPDGQTIASASDD 324 (577)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTSCEEE--------------------EECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEE--------------------EEecCCCCeEEEEECCCCCEEEEEeCC
Confidence 34556666654 78899999975432210 113577889999999999999999888
Q ss_pred CCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecc
Q 013827 95 DDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG 174 (436)
Q Consensus 95 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~ 174 (436)
+ .+.+|+...... .....| ...+.++++ +|++++|++|+.||.|++|+... +
T Consensus 325 ~-----~i~~w~~~~~~~-~~~~~~----~~~v~~~~~-------s~~g~~l~~~~~dg~v~~~~~~~-~---------- 376 (577)
T 2ymu_A 325 K-----TVKLWNRNGQHL-QTLTGH----SSSVWGVAF-------SPDGQTIASASDDKTVKLWNRNG-Q---------- 376 (577)
T ss_dssp S-----CEEEEETTSCEE-EEECCC----SSCEEEEEE-------CTTSSEEEEEETTSEEEEEETTC-C----------
T ss_pred C-----eEEEEeCCCCee-EEEeCC----CCCEEEEEE-------CCCCCEEEEEeCCCEEEEEcCCC-C----------
Confidence 6 566676554311 111112 223355666 89999999999999999999642 2
Q ss_pred cchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCC
Q 013827 175 IDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH 254 (436)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 254 (436)
....+.+|...|.+++|+|++ .+|++++.|+.|++||. +++.+..+.+|...|++++|+|+
T Consensus 377 -----------------~~~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d 437 (577)
T 2ymu_A 377 -----------------LLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD 437 (577)
T ss_dssp -----------------EEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTT
T ss_pred -----------------EEEEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCC
Confidence 122355799999999999997 58999999999999995 56778889999999999999999
Q ss_pred CCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE
Q 013827 255 SPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL 334 (436)
Q Consensus 255 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 334 (436)
+ .+|++++.|+.|++||.. .+.......|...+.+++|+|++ .++++++.|+.|++||.. + +.+..+
T Consensus 438 ~-~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~-~~las~~~d~~i~iw~~~-~---------~~~~~~ 504 (577)
T 2ymu_A 438 D-QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-G---------QLLQTL 504 (577)
T ss_dssp S-SEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTS-CEEEEEETTSEEEEEETT-S---------CEEEEE
T ss_pred C-CEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEcCC-C---------CEEEEE
Confidence 9 899999999999999964 44445566788999999999987 689999999999999953 3 557888
Q ss_pred eccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 013827 335 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 335 ~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 412 (436)
.+|...|++++|+|++ .+|++++.|+.|++||.. ++ .+..+.+|.+.|++++|+||+++ |++++.|+.|++||
T Consensus 505 ~~h~~~v~~l~~s~dg-~~l~s~~~dg~v~lwd~~-~~--~~~~~~~h~~~v~~~~fs~dg~~-l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 505 TGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQ--LLQTLTGHSSSVWGVAFSPDGQT-IASASSDKTVKLWN 577 (577)
T ss_dssp ECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTT-SC--EEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEEC
T ss_pred eCCCCCEEEEEEcCCC-CEEEEEECcCEEEEEeCC-CC--EEEEEcCCCCCEEEEEEcCCCCE-EEEEeCCCEEEEeC
Confidence 9999999999999999 899999999999999964 44 56677899999999999999995 88999999999997
No 20
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2e-39 Score=296.12 Aligned_cols=289 Identities=18% Similarity=0.284 Sum_probs=224.2
Q ss_pred CCCcccccccee-----cc-CCceEEEEEecCCcceeEEEEEecCCCCCC-------ceeeecccccCcCcceeecccCC
Q 013827 70 DEDSEDLEDMTI-----NP-NDAVIVCARNEDDVSHLEVYILEESDGGDP-------NLYVHHHIIIPAFPLCMAWLDCP 136 (436)
Q Consensus 70 ~~~~~~v~~~~~-----sp-~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 136 (436)
.+|.+.|.+++| +| ++++|++|+.++ .|.+|+....... ..+..|. ..+.+++|
T Consensus 18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~-----~v~iWd~~~~~~~~~~~~~~~~l~~h~----~~V~~~~~---- 84 (343)
T 2xzm_R 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDK-----TVMIWKLYEEEQNGYFGIPHKALTGHN----HFVSDLAL---- 84 (343)
T ss_dssp ECCSSCEEEEEECCCSSTTCCCCEEEEEETTS-----CEEEEEECSSCCSSBSEEEEEEECCCS----SCEEEEEE----
T ss_pred ccchhhhhheeeEEEeecCCCCCEEEEEcCCC-----EEEEEECCcCCcccccccccchhccCC----CceEEEEE----
Confidence 378899999999 77 999999999887 5555554432111 1112222 23456666
Q ss_pred CCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEE
Q 013827 137 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 216 (436)
Q Consensus 137 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 216 (436)
+|++.+|++|+.|++|++||+.+++... .+.+|...|.+++|+|++ .+|
T Consensus 85 ---~~~~~~l~s~s~D~~v~lwd~~~~~~~~---------------------------~~~~h~~~v~~v~~sp~~-~~l 133 (343)
T 2xzm_R 85 ---SQENCFAISSSWDKTLRLWDLRTGTTYK---------------------------RFVGHQSEVYSVAFSPDN-RQI 133 (343)
T ss_dssp ---CSSTTEEEEEETTSEEEEEETTSSCEEE---------------------------EEECCCSCEEEEEECSST-TEE
T ss_pred ---CCCCCEEEEEcCCCcEEEEECCCCcEEE---------------------------EEcCCCCcEEEEEECCCC-CEE
Confidence 8999999999999999999998654432 255899999999999997 599
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEEc---ccCCCeEEEEEcCCCC---------CEEEEEECCCcEEEEecCCCCCccceEe
Q 013827 217 ASASADKQVKIWDVAAGKCNLTLE---HHTDKVQAVAWNHHSP---------QILLSGSFDRSVVMKDARISTHSGFKWA 284 (436)
Q Consensus 217 ~s~~~dg~v~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~---------~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 284 (436)
++++.|++|++||+... ...... .|...|.+++|+|++. .++++++.|+.|++||.. .........
T Consensus 134 ~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~ 211 (343)
T 2xzm_R 134 LSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKA 211 (343)
T ss_dssp EEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEEC
T ss_pred EEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcC
Confidence 99999999999999843 333333 6889999999999862 589999999999999943 333344567
Q ss_pred eeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEE
Q 013827 285 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK 364 (436)
Q Consensus 285 ~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~ 364 (436)
|...|.+++|+|++ .++++|+.|+.|++||++... .....+ .+...|.+++|+|++ .+++++ .|+.|+
T Consensus 212 h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~--------~~~~~~-~~~~~v~~v~~sp~~-~~la~~-~d~~v~ 279 (343)
T 2xzm_R 212 HESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLT--------YPQREF-DAGSTINQIAFNPKL-QWVAVG-TDQGVK 279 (343)
T ss_dssp CSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCS--------SCSEEE-ECSSCEEEEEECSSS-CEEEEE-ESSCEE
T ss_pred ccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCc--------ccceee-cCCCcEEEEEECCCC-CEEEEE-CCCCEE
Confidence 88899999999987 689999999999999996541 223333 355679999999998 677654 578899
Q ss_pred EEECCCCCceeEEeeC-----------CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 365 LWDLSNNQPSCIASRN-----------PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 365 iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
+||+.+.+......+. +|...|.+++|+|+|++ |++|+.||.|++|++.+++
T Consensus 280 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 280 IFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK-LFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp EEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCC-EEEEETTSEEEEEEEEEEE
T ss_pred EEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCe-EEEecCCceEEEEEEEccC
Confidence 9999887644433333 67788999999999995 8999999999999987653
No 21
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=9.3e-40 Score=305.37 Aligned_cols=251 Identities=22% Similarity=0.320 Sum_probs=224.8
Q ss_pred CcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeE
Q 013827 126 FPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG 205 (436)
Q Consensus 126 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 205 (436)
.+.|++| +|++++|++|+.||+|+|||+.+++... .+.+|...|.+
T Consensus 110 ~V~~~~~-------~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---------------------------~l~~h~~~V~~ 155 (410)
T 1vyh_C 110 PVTRVIF-------HPVFSVMVSASEDATIKVWDYETGDFER---------------------------TLKGHTDSVQD 155 (410)
T ss_dssp CEEEEEE-------CSSSSEEEEEESSSCEEEEETTTCCCCE---------------------------EECCCSSCEEE
T ss_pred cEEEEEE-------cCCCCEEEEEeCCCeEEEEECCCCcEEE---------------------------EEeccCCcEEE
Confidence 3457777 8999999999999999999998755443 25689999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEee
Q 013827 206 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV 285 (436)
Q Consensus 206 ~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 285 (436)
++|+|++ .+|++|+.|++|++||+.+++++..+.+|...|.+++|+|++ .++++|+.|++|++||++++........|
T Consensus 156 v~~~~~~-~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~h 233 (410)
T 1vyh_C 156 ISFDHSG-KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGH 233 (410)
T ss_dssp EEECTTS-SEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeCC
Confidence 9999996 599999999999999999999999999999999999999999 89999999999999999998887777788
Q ss_pred eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC---------------
Q 013827 286 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV--------------- 350 (436)
Q Consensus 286 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--------------- 350 (436)
...+.++.++|++ .++++|+.|+.|++||+++. .....+..|...|.+++|+|++
T Consensus 234 ~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 303 (410)
T 1vyh_C 234 REWVRMVRPNQDG-TLIASCSNDQTVRVWVVATK---------ECKAELREHRHVVECISWAPESSYSSISEATGSETKK 303 (410)
T ss_dssp SSCEEEEEECTTS-SEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC---
T ss_pred CccEEEEEECCCC-CEEEEEcCCCeEEEEECCCC---------ceeeEecCCCceEEEEEEcCcccccchhhhccccccc
Confidence 9999999999987 68999999999999999887 5677888999999999999962
Q ss_pred ----CCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccC
Q 013827 351 ----PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 425 (436)
Q Consensus 351 ----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (436)
+.+|++|+.|+.|++||+++++ .+..+.+|...|++++|+|++++ |++++.||.|++||+.+++++.....+
T Consensus 304 ~~~~g~~l~sgs~D~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~D~~i~vwd~~~~~~~~~~~~h 379 (410)
T 1vyh_C 304 SGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRVWDYKNKRCMKTLNAH 379 (410)
T ss_dssp ----CCEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSSC-EEEEETTTEEEEECCTTSCCCEEEECC
T ss_pred cCCCCCEEEEEeCCCeEEEEECCCCc--eEEEEECCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCceEEEEcCC
Confidence 2689999999999999999887 56677889999999999999995 889999999999999998887665443
No 22
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-39 Score=293.11 Aligned_cols=258 Identities=21% Similarity=0.340 Sum_probs=222.5
Q ss_pred cCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCccccee
Q 013827 125 AFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL 204 (436)
Q Consensus 125 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 204 (436)
..+.+++|.+. -.+++.+|++|+.|++|+||++..... .....+.+|...|.
T Consensus 33 ~~V~~v~~~~~---~~~~~~~l~tgs~D~~v~vW~~~~~~~-------------------------~~~~~l~gh~~~v~ 84 (321)
T 3ow8_A 33 DAIWSVAWGTN---KKENSETVVTGSLDDLVKVWKWRDERL-------------------------DLQWSLEGHQLGVV 84 (321)
T ss_dssp SCEEEEEEC----------CEEEEEETTSCEEEEEEETTEE-------------------------EEEEEECCCSSCEE
T ss_pred CcEEEEEEecC---CCCCCCEEEEEcCCCCEEEEECCCCCe-------------------------eeeeeeccCCCCEE
Confidence 34467888311 013578999999999999999864321 12233668999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEe
Q 013827 205 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA 284 (436)
Q Consensus 205 ~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 284 (436)
+++|++++ .++++++.|++|++||+.+++.+..+..|...+.+++|+|++ .+|++++.|+.|++||+++.........
T Consensus 85 ~~~~~~~~-~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~~~ 162 (321)
T 3ow8_A 85 SVDISHTL-PIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLDT 162 (321)
T ss_dssp EEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEEEC
T ss_pred EEEECCCC-CEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEecC
Confidence 99999996 599999999999999999999999999899999999999999 8999999999999999998887766667
Q ss_pred eeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEE
Q 013827 285 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK 364 (436)
Q Consensus 285 ~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~ 364 (436)
+...+.+++|+|++ .++++++.|+.|++||++++ +.+..+.+|..+|.+++|+|++ .+|++|+.|+.|+
T Consensus 163 ~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~l~~spd~-~~l~s~s~dg~i~ 231 (321)
T 3ow8_A 163 RGKFILSIAYSPDG-KYLASGAIDGIINIFDIATG---------KLLHTLEGHAMPIRSLTFSPDS-QLLVTASDDGYIK 231 (321)
T ss_dssp SSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCCCEEEECTTS-CEEEEECTTSCEE
T ss_pred CCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCC---------cEEEEEcccCCceeEEEEcCCC-CEEEEEcCCCeEE
Confidence 78889999999987 68999999999999999987 6678889999999999999998 8999999999999
Q ss_pred EEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccCC
Q 013827 365 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 426 (436)
Q Consensus 365 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 426 (436)
+||+++.+ ....+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++++.....+.
T Consensus 232 iwd~~~~~--~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~h~ 290 (321)
T 3ow8_A 232 IYDVQHAN--LAGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGTRTCVHTFFDHQ 290 (321)
T ss_dssp EEETTTCC--EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred EEECCCcc--eeEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCEEEEEEcCCC
Confidence 99999887 5667789999999999999999 59999999999999999999887765543
No 23
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.6e-39 Score=314.66 Aligned_cols=320 Identities=22% Similarity=0.318 Sum_probs=256.8
Q ss_pred hhcccceeeec-----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEEec
Q 013827 20 YHSCFRCHKIS-----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNE 94 (436)
Q Consensus 20 ~~~~~~~~~~~-----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~ 94 (436)
+.+..|+|+.. +.|+++++|+.+...+. ....|...|.+++|+|+++.|++++.+
T Consensus 224 v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~--------------------~~~~~~~~v~~v~~~~d~~~l~~~~~d 283 (577)
T 2ymu_A 224 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ--------------------TLTGHSSSVNGVAFRPDGQTIASASDD 283 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTSCEEE--------------------EECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEE--------------------EEecCCCCEEEEEEcCCCCEEEEEeCC
Confidence 45566777655 78999999975432221 112567789999999999999999888
Q ss_pred CCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecc
Q 013827 95 DDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG 174 (436)
Q Consensus 95 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~ 174 (436)
+ .+.+|+.... .......|. ..+.++++ +|++++|++++.||.|++||......
T Consensus 284 ~-----~i~~w~~~~~-~~~~~~~h~----~~v~~~~~-------~~~~~~l~t~~~d~~i~~w~~~~~~~--------- 337 (577)
T 2ymu_A 284 K-----TVKLWNRNGQ-LLQTLTGHS----SSVWGVAF-------SPDGQTIASASDDKTVKLWNRNGQHL--------- 337 (577)
T ss_dssp S-----CEEEEETTSC-EEEEECCCS----SCEEEEEE-------CTTSSEEEEEETTSCEEEEETTSCEE---------
T ss_pred C-----EEEEEeCCCc-EEEEEecCC----CCeEEEEE-------CCCCCEEEEEeCCCeEEEEeCCCCee---------
Confidence 6 6667765432 111222222 22345555 89999999999999999999864221
Q ss_pred cchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCC
Q 013827 175 IDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH 254 (436)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 254 (436)
..+.+|...|.+++|+|++ .+|++++.|+.|++||. +++.+..+.+|...|.+++|+|+
T Consensus 338 -------------------~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d 396 (577)
T 2ymu_A 338 -------------------QTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD 396 (577)
T ss_dssp -------------------EEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTT
T ss_pred -------------------EEEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCC
Confidence 1245799999999999997 59999999999999995 56778889999999999999999
Q ss_pred CCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE
Q 013827 255 SPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL 334 (436)
Q Consensus 255 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 334 (436)
+ .+|++++.|+.|++||.. .+.......|...+.+++|+|++ .++++++.|+.|++||... +.+..+
T Consensus 397 g-~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~~----------~~~~~~ 463 (577)
T 2ymu_A 397 G-QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNRNG----------QLLQTL 463 (577)
T ss_dssp S-SCEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTS----------CEEEEE
T ss_pred C-CEEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCC-CEEEEEcCCCEEEEEECCC----------CEEEEE
Confidence 9 889999999999999964 44445566788999999999987 6899999999999999643 457788
Q ss_pred eccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 335 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 335 ~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
.+|...|.+++|+|++ .+|++++.|+.|++||.. ++ .+..+.+|...|++++|+|++++ |++++.||.|+|||.
T Consensus 464 ~~~~~~v~~~~~spd~-~~las~~~d~~i~iw~~~-~~--~~~~~~~h~~~v~~l~~s~dg~~-l~s~~~dg~v~lwd~- 537 (577)
T 2ymu_A 464 TGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQ--LLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR- 537 (577)
T ss_dssp ECCSSCEEEEEECTTS-CEEEEEETTSEEEEEETT-SC--EEEEEECCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-
T ss_pred cCCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEcCC-CC--EEEEEeCCCCCEEEEEEcCCCCE-EEEEECcCEEEEEeC-
Confidence 8999999999999998 899999999999999964 44 46677889999999999999995 899999999999996
Q ss_pred CCccccccccC
Q 013827 415 SDAGISNRFSK 425 (436)
Q Consensus 415 ~~~~~~~~~~~ 425 (436)
+++.+.....+
T Consensus 538 ~~~~~~~~~~h 548 (577)
T 2ymu_A 538 NGQLLQTLTGH 548 (577)
T ss_dssp TSCEEEEEECC
T ss_pred CCCEEEEEcCC
Confidence 56666655443
No 24
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.5e-38 Score=286.12 Aligned_cols=287 Identities=17% Similarity=0.285 Sum_probs=237.8
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceee-ecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYV-HHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
.|.+.|.+++|+|++++|++++ ++ .|.+|+........... ...........+++| +|++++|+++
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~ 115 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG-KG-----CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL-------LPDGCTLIVG 115 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BS-----EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEE-------CTTSSEEEEE
T ss_pred cCCCceEEEEEecCCcEEEEcC-CC-----eEEEEECCCCCceeeeecccccCCCCcEEEEEE-------cCCCCEEEEE
Confidence 6788999999999999999997 65 77777766543222211 111112334567777 8999999999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+.||.|++||+.+.+.. ....+..|...|.+++|+|++ .+|++++.||.|++||
T Consensus 116 ~~d~~i~~~d~~~~~~~-------------------------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d 169 (337)
T 1gxr_A 116 GEASTLSIWDLAAPTPR-------------------------IKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWD 169 (337)
T ss_dssp ESSSEEEEEECCCC--E-------------------------EEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEE
T ss_pred cCCCcEEEEECCCCCcc-------------------------eeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEe
Confidence 99999999999864421 122345788999999999996 5999999999999999
Q ss_pred CCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCC
Q 013827 230 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG 309 (436)
Q Consensus 230 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg 309 (436)
+++++.+..+..|...|.+++|+|++ .++++++.|+.|++||+++.+... ...+...+.+++|+|++ ..+++++.++
T Consensus 170 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~v~~~~~s~~~-~~l~~~~~~~ 246 (337)
T 1gxr_A 170 LHNQTLVRQFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQLQ-QHDFTSQIFSLGYCPTG-EWLAVGMESS 246 (337)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEECTTS-SEEEEEETTS
T ss_pred CCCCceeeeeecccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCceEe-eecCCCceEEEEECCCC-CEEEEEcCCC
Confidence 99999999999999999999999999 899999999999999999876654 34678889999999987 6899999999
Q ss_pred cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEE
Q 013827 310 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV 389 (436)
Q Consensus 310 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 389 (436)
.|++||+++. . ...+..|...+.+++|+|++ .+|++++.||.|++||+.+++.. . ...|...+.++
T Consensus 247 ~i~~~~~~~~---------~-~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~~--~-~~~~~~~v~~~ 312 (337)
T 1gxr_A 247 NVEVLHVNKP---------D-KYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASI--F-QSKESSSVLSC 312 (337)
T ss_dssp CEEEEETTSS---------C-EEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE--E-EEECSSCEEEE
T ss_pred cEEEEECCCC---------C-eEEEcCCccceeEEEECCCC-CEEEEecCCCcEEEEECCCCeEE--E-EecCCCcEEEE
Confidence 9999999876 2 45678899999999999998 89999999999999999998743 2 23467789999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 390 AFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 390 ~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
+|+|+++ +|++++.||.|++|++.
T Consensus 313 ~~s~~~~-~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 313 DISVDDK-YIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EECTTSC-EEEEEETTSCEEEEEEE
T ss_pred EECCCCC-EEEEecCCCeEEEEEEe
Confidence 9999999 58899999999999973
No 25
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.1e-39 Score=297.25 Aligned_cols=301 Identities=16% Similarity=0.228 Sum_probs=235.8
Q ss_pred CCCccccccceeccC----CceEEEEEecCCcceeEEEEEecCCCCCCceeeecc-cccCcCcceeecccCCCCCCCC--
Q 013827 70 DEDSEDLEDMTINPN----DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHH-IIIPAFPLCMAWLDCPLKDREK-- 142 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~----~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~-- 142 (436)
.+|.+.|.+++|+|+ ...+++++.++ .|.+|+.........+..+. ........+++| +|+
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~-----~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~ 82 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSN-----RVTLYECHSQGEIRLLQSYVDADADENFYTCAW-------TYDSN 82 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETT-----EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEE-------EECTT
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCC-----EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEe-------ccCCC
Confidence 378899999999994 45566666665 56666665443323333222 123344567878 555
Q ss_pred --CcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEe
Q 013827 143 --GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 220 (436)
Q Consensus 143 --~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 220 (436)
+++|++|+.||.|++||+.+++... .+.+|...|.+++|+|++..+|++++
T Consensus 83 ~~~~~l~~~~~dg~i~v~d~~~~~~~~---------------------------~~~~~~~~i~~~~~~~~~~~~l~s~~ 135 (366)
T 3k26_A 83 TSHPLLAVAGSRGIIRIINPITMQCIK---------------------------HYVGHGNAINELKFHPRDPNLLLSVS 135 (366)
T ss_dssp TCCEEEEEEETTCEEEEECTTTCCEEE---------------------------EEESCCSCEEEEEECSSCTTEEEEEE
T ss_pred CCCCEEEEecCCCEEEEEEchhceEee---------------------------eecCCCCcEEEEEECCCCCCEEEEEe
Confidence 7899999999999999998654432 24579999999999993246999999
Q ss_pred CCCcEEEEeCCCCeEEEEE---cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE--------------
Q 013827 221 ADKQVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-------------- 283 (436)
Q Consensus 221 ~dg~v~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-------------- 283 (436)
.||.|++||+.+++.+..+ ..|...|.+++|+|++ .+|++++.|+.|++||+++........
T Consensus 136 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (366)
T 3k26_A 136 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPF 214 (366)
T ss_dssp TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCC
T ss_pred CCCeEEEEEeecCeEEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccc
Confidence 9999999999999998888 6899999999999998 899999999999999998764432221
Q ss_pred --------------eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCC-----CCCCcccEEEeccCCCeEEE
Q 013827 284 --------------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD-----STSQQSSFTLHAHDKAVCTI 344 (436)
Q Consensus 284 --------------~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~ 344 (436)
.+...+.+++|+ + .++++++.|+.|++||+++...... ......+..+..|...|+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 291 (366)
T 3k26_A 215 ISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYM 291 (366)
T ss_dssp CCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCC
T ss_pred cceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEE
Confidence 177889999998 3 5899999999999999987643111 11123467778899999999
Q ss_pred EecCC--CCCEEEEEeCCCcEEEEECCCCCce--eEEeeCCC--CCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 345 SYNPL--VPNLLATGSTDKMVKLWDLSNNQPS--CIASRNPK--AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 345 ~~~p~--~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
+|+|+ + .+|++|+.||.|++||+.+++.. ....+..| ...|++++|+|+++ +|++++.||.|++||+.+
T Consensus 292 ~~s~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 292 RFSMDFWQ-KMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS-ILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CCEECTTS-SEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEEC--
T ss_pred EEcCCCCC-cEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC-eEEEEeCCCEEEEEEecC
Confidence 99999 7 89999999999999999987642 33455666 78999999999999 599999999999999863
No 26
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-39 Score=302.47 Aligned_cols=348 Identities=11% Similarity=0.109 Sum_probs=258.1
Q ss_pred HHhhcccceeeec------cCCCCcceeee----cceeeccccccceeccCCCCCCccc-CCCCCCccccccceeccCCc
Q 013827 18 RLYHSCFRCHKIS------NASNTSSIWLI----SGVEIFGKGLGDLYYASNQMDPYLK-DKDDEDSEDLEDMTINPNDA 86 (436)
Q Consensus 18 ~~~~~~~~~~~~~------~~~~t~~~w~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~ 86 (436)
..+.++.|+|+.+ +.|+++++|++ ................ .++.. .....|.+.|.+++|+|+++
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELR----HPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEE----CCCCCC------CBCEEEEEECTTSS
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccc----ccccccccccCCCCceEEEEEcCCCC
Confidence 3467788888766 78999999999 5544210000000000 00000 01124677999999999999
Q ss_pred eEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCC
Q 013827 87 VIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEV 166 (436)
Q Consensus 87 ~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~ 166 (436)
+|++++.++ .|.+|+.... ....+..| ...+.+++| +|++++|++++.||.|++||+.+++..
T Consensus 122 ~l~~~~~dg-----~i~i~~~~~~-~~~~~~~~----~~~v~~~~~-------~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 122 SIVTGVENG-----ELRLWNKTGA-LLNVLNFH----RAPIVSVKW-------NKDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp EEEEEETTS-----CEEEEETTSC-EEEEECCC----CSCEEEEEE-------CTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred EEEEEeCCC-----eEEEEeCCCC-eeeeccCC----CccEEEEEE-------CCCCCEEEEEecCCeEEEEECCCCcEE
Confidence 999998886 6777763322 11222222 234467777 899999999999999999999876544
Q ss_pred cceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCe
Q 013827 167 QPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKV 246 (436)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v 246 (436)
......... ..........+....+.+++|+|++ .+++++.||.|++||+.+++.+..+..|...|
T Consensus 185 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i 250 (425)
T 1r5m_A 185 QHFELKETG------------GSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPI 250 (425)
T ss_dssp EEECCC---------------------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECCCSSCE
T ss_pred EEeeccccC------------ccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeeccCCCce
Confidence 322110000 0000000011222339999999983 68999999999999999999999999999999
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCC
Q 013827 247 QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST 326 (436)
Q Consensus 247 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~ 326 (436)
.+++|+|++ .+|++++.|+.|++||+++.........+...+.+++|+|++ .+++++.|+.|++||+++.
T Consensus 251 ~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~------- 320 (425)
T 1r5m_A 251 SVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQN------- 320 (425)
T ss_dssp EEEEEETTT-TEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTT-------
T ss_pred EEEEECCCC-CEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCC-------
Confidence 999999999 899999999999999999888777666788999999999977 8999999999999999887
Q ss_pred CCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc------------------eeEEeeCCCCC--cE
Q 013827 327 SQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP------------------SCIASRNPKAG--AV 386 (436)
Q Consensus 327 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~------------------~~~~~~~~~~~--~v 386 (436)
..+..+..|...+.+++|+|++ .+|++++.||.|++||+++.+. ..+..+..|.. .|
T Consensus 321 --~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 397 (425)
T 1r5m_A 321 --TLLALSIVDGVPIFAGRISQDG-QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYI 397 (425)
T ss_dssp --EEEEEEECTTCCEEEEEECTTS-SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCE
T ss_pred --cEeEecccCCccEEEEEEcCCC-CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCce
Confidence 6678888899999999999998 8999999999999999986540 14566777766 99
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 387 FSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 387 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
.+++|+|+++ +|++++.||.|++||+.
T Consensus 398 ~~~~~s~~~~-~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 398 FDLSWNCAGN-KISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEECTTSS-EEEEEESSSCCEEEECC
T ss_pred EEEEccCCCc-eEEEEecCceEEEEeec
Confidence 9999999999 58899999999999985
No 27
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-38 Score=295.07 Aligned_cols=299 Identities=21% Similarity=0.306 Sum_probs=237.0
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEee
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 150 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 150 (436)
++.+.+....+++++..+++++.++ .|++|+...+........ .....+.+++| +|++++|++|+
T Consensus 89 ~~~~~~~~~~~~~s~~~l~~~~~d~-----~v~lw~~~~~~~~~~~~~---~~~~~v~~v~~-------s~~~~~l~~~~ 153 (401)
T 4aez_A 89 GIIDDYYLNLLDWSNLNVVAVALER-----NVYVWNADSGSVSALAET---DESTYVASVKW-------SHDGSFLSVGL 153 (401)
T ss_dssp TCCCCTTCBCEEECTTSEEEEEETT-----EEEEEETTTCCEEEEEEC---CTTCCEEEEEE-------CTTSSEEEEEE
T ss_pred CCcCCceEEEEeecCCCEEEEECCC-----eEEEeeCCCCcEeEeeec---CCCCCEEEEEE-------CCCCCEEEEEC
Confidence 4555555555555556677787777 888888877632222222 12344567888 89999999999
Q ss_pred CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 013827 151 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 230 (436)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~ 230 (436)
.||.|++||+.+++... .+.+|...|.+++|++ .+|++++.||.|++||+
T Consensus 154 ~dg~i~iwd~~~~~~~~---------------------------~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~ 203 (401)
T 4aez_A 154 GNGLVDIYDVESQTKLR---------------------------TMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDV 203 (401)
T ss_dssp TTSCEEEEETTTCCEEE---------------------------EECCCSSCEEEEEEET---TEEEEEETTSEEEEEET
T ss_pred CCCeEEEEECcCCeEEE---------------------------EecCCCCceEEEEECC---CEEEEEcCCCCEEEEec
Confidence 99999999998654332 2457999999999954 48999999999999999
Q ss_pred C-CCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEe--C
Q 013827 231 A-AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL--E 307 (436)
Q Consensus 231 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~ 307 (436)
. .......+.+|...|.+++|+|++ .+|++++.|+.|++||+++.........+...+.+++|+|++..++++++ .
T Consensus 204 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~ 282 (401)
T 4aez_A 204 RIANHQIGTLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTM 282 (401)
T ss_dssp TSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTT
T ss_pred ccCcceeeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCC
Confidence 8 566788888999999999999998 89999999999999999988777666678899999999999888888876 7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEE--eCCCcEEEEECCCCCceeEEeeCCCCCc
Q 013827 308 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG--STDKMVKLWDLSNNQPSCIASRNPKAGA 385 (436)
Q Consensus 308 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 385 (436)
|+.|++||++++ ..+..+. +...+.+++|+|++ .+|+++ +.||.|++||+.+++......+.+|.+.
T Consensus 283 d~~i~i~d~~~~---------~~~~~~~-~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~ 351 (401)
T 4aez_A 283 DKQIHFWNAATG---------ARVNTVD-AGSQVTSLIWSPHS-KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTR 351 (401)
T ss_dssp TCEEEEEETTTC---------CEEEEEE-CSSCEEEEEECSSS-SEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSC
T ss_pred CCEEEEEECCCC---------CEEEEEe-CCCcEEEEEECCCC-CeEEEEeecCCCcEEEEecCCccceeEEEecCCCCC
Confidence 999999999987 4455554 67789999999999 788874 4899999999998776666677889999
Q ss_pred EEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccCCC
Q 013827 386 VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 427 (436)
Q Consensus 386 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 427 (436)
|.+++|+|+++ +|++++.||.|++|++.+++.+........
T Consensus 352 v~~~~~s~dg~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 392 (401)
T 4aez_A 352 VLYSALSPDGR-ILSTAASDENLKFWRVYDGDHVKRPIPITK 392 (401)
T ss_dssp CCEEEECTTSS-EEEEECTTSEEEEEECCC------------
T ss_pred EEEEEECCCCC-EEEEEeCCCcEEEEECCCCccccccccccC
Confidence 99999999999 599999999999999999998876554443
No 28
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=292.79 Aligned_cols=299 Identities=17% Similarity=0.213 Sum_probs=229.7
Q ss_pred CCCccccccceeccCCceEEEEE-e---cCCcceeEEEEEecCCCCCCcee-eecccccCcCcceeecccCCCCCCCC--
Q 013827 70 DEDSEDLEDMTINPNDAVIVCAR-N---EDDVSHLEVYILEESDGGDPNLY-VHHHIIIPAFPLCMAWLDCPLKDREK-- 142 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~-~---~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~-- 142 (436)
..|.+.|.+++|+|+++.+++++ . ++ .|.+|+.......... ..| .....|++| +|+
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~-----~v~iw~~~~~~~~~~~~~~~----~~~v~~~~~-------~~~~~ 78 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTG-----VIQLYEIQHGDLKLLREIEK----AKPIKCGTF-------GATSL 78 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCE-----EEEEEEECSSSEEEEEEEEE----SSCEEEEEC-------TTCCT
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCc-----EEEEEeCCCCcccceeeecc----cCcEEEEEE-------cCCCC
Confidence 45889999999999997665544 3 33 6666766654222121 123 334467777 666
Q ss_pred -CcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEE------ecCCCCcE
Q 013827 143 -GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA------WNKEFRNI 215 (436)
Q Consensus 143 -~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~------~~~~~~~~ 215 (436)
+++|++|+.||.|++||+.+.+. ....+.+|...|.+++ |+|++ .+
T Consensus 79 ~~~~l~~~~~dg~i~iwd~~~~~~--------------------------~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~ 131 (357)
T 3i2n_A 79 QQRYLATGDFGGNLHIWNLEAPEM--------------------------PVYSVKGHKEIINAIDGIGGLGIGEGA-PE 131 (357)
T ss_dssp TTCCEEEEETTSCEEEECTTSCSS--------------------------CSEEECCCSSCEEEEEEESGGGCC-CC-CE
T ss_pred CCceEEEecCCCeEEEEeCCCCCc--------------------------cEEEEEecccceEEEeeccccccCCCc-cE
Confidence 79999999999999999986541 1222558999999995 56775 59
Q ss_pred EEEEeCCCcEEEEeCCCCe-EEEEEcccCC----CeEEEE----EcCCCCCEEEEEECCCcEEEEecCCCCCccceEeee
Q 013827 216 LASASADKQVKIWDVAAGK-CNLTLEHHTD----KVQAVA----WNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA 286 (436)
Q Consensus 216 l~s~~~dg~v~vwd~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 286 (436)
|++++.||.|++||+.+++ .+..+..|.. .+.++. |+|++ .++++++.|+.|++||+++..... ...+.
T Consensus 132 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~ 209 (357)
T 3i2n_A 132 IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALRW-ETNIK 209 (357)
T ss_dssp EEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEEE-EEECS
T ss_pred EEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCceee-ecCCC
Confidence 9999999999999999886 6777765554 899998 67888 899999999999999999877643 56778
Q ss_pred CCeeEEEeCC---CCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcE
Q 013827 287 ADVESLAWDP---HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 363 (436)
Q Consensus 287 ~~i~~~~~~~---~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i 363 (436)
..+.+++|+| ++ ..+++++.||.|++||+++...... .....+..|...|++++|+|++..+|++++.||.|
T Consensus 210 ~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 284 (357)
T 3i2n_A 210 NGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPTKG----FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGL 284 (357)
T ss_dssp SCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEETTTE----EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred CceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcccc----eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcE
Confidence 8999999999 66 6899999999999999987632110 01113348999999999999983489999999999
Q ss_pred EEEECCCCCc-----------------eeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 364 KLWDLSNNQP-----------------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 364 ~iwd~~~~~~-----------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
++||++.... ..+..+..|...|++++|+|++++++++++.||.|++||+.+.+.
T Consensus 285 ~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 285 HLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred EEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 9999986432 246677889999999999999997444899999999999987654
No 29
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6.9e-40 Score=300.39 Aligned_cols=296 Identities=15% Similarity=0.149 Sum_probs=217.7
Q ss_pred HHHhhcccceeeec----cCCCCcceeeecceeeccccccceeccCCCCCCccc--CCCCCCccccccceeccCCceEEE
Q 013827 17 LRLYHSCFRCHKIS----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLK--DKDDEDSEDLEDMTINPNDAVIVC 90 (436)
Q Consensus 17 ~~~~~~~~~~~~~~----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~ 90 (436)
.+.+.++.|+|+++ +++.++|+|+-.- .+++.....+... ....+|...|.+++|+|++.+++
T Consensus 42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v----------~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~- 110 (357)
T 4g56_B 42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSI----------WVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILV- 110 (357)
T ss_dssp CSEEEEEEECSSSCEEEEEECSSSSSCCEEE----------EEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEE-
T ss_pred cCCEEEEEECCCCCEEEEEcCCCCccccCeE----------EEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEE-
Confidence 34577888999987 3333456675321 1111111112111 12235778899999999997765
Q ss_pred EEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCccee
Q 013827 91 ARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHV 170 (436)
Q Consensus 91 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~ 170 (436)
++.++ .|.+|+...++...............+.|++| +|++++|++|+.||.|++||+.+++...
T Consensus 111 ~s~dg-----~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~-------spdg~~l~sgs~dg~v~iwd~~~~~~~~--- 175 (357)
T 4g56_B 111 ASDSG-----AVELWEILEKESLLVNKFAKYEHDDIVKTLSV-------FSDGTQAVSGGKDFSVKVWDLSQKAVLK--- 175 (357)
T ss_dssp EETTS-----CEEEC--------CCCCEEECCCSSCEEEEEE-------CSSSSEEEEEETTSCEEEEETTTTEEEE---
T ss_pred EECCC-----EEEEeeccccceeEEEeeccCCCCCCEEEEEE-------CCCCCEEEEEeCCCeEEEEECCCCcEEE---
Confidence 44555 56666655442221111111112234567777 8999999999999999999998654332
Q ss_pred eecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEE--cccCCCeEE
Q 013827 171 ILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL--EHHTDKVQA 248 (436)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~--~~~~~~v~~ 248 (436)
.+.+|...|++++|+|++..++++++.|+.|++||+++++....+ ..|...+.+
T Consensus 176 ------------------------~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~ 231 (357)
T 4g56_B 176 ------------------------SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTS 231 (357)
T ss_dssp ------------------------EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEE
T ss_pred ------------------------EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccc
Confidence 356899999999999997778999999999999999998876654 356778999
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 013827 249 VAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQ 328 (436)
Q Consensus 249 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~ 328 (436)
++|+|++..+|++|+.|+.|++||+++.+.......+...|++++|+|++..++++|+.|++|++||++++
T Consensus 232 v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~--------- 302 (357)
T 4g56_B 232 VTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS--------- 302 (357)
T ss_dssp EEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---------
T ss_pred hhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---------
Confidence 99999876899999999999999999988887777889999999999998788999999999999999876
Q ss_pred cccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 013827 329 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 329 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
+.+ ...+|...|++++|+|..+.+|++++.|++|++|++....
T Consensus 303 ~~~-~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 303 EVF-RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred cEe-EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 333 4557999999999999433899999999999999997643
No 30
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-39 Score=304.56 Aligned_cols=299 Identities=16% Similarity=0.260 Sum_probs=239.3
Q ss_pred CccccccceeccCCc-eEEEE----------EecCCcceeEEEEEecCCCCC--CceeeecccccCcCcceeecccCCCC
Q 013827 72 DSEDLEDMTINPNDA-VIVCA----------RNEDDVSHLEVYILEESDGGD--PNLYVHHHIIIPAFPLCMAWLDCPLK 138 (436)
Q Consensus 72 ~~~~v~~~~~sp~~~-~l~~~----------~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
+.+.|.+++|+|+++ +|+++ +.++ .|.+|+...... ......| .....|++|
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~-----~v~iw~~~~~~~~~~~~~~~~----~~~v~~~~~------ 75 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDS-----SLELWSLLAADSEKPIASLQV----DSKFNDLDW------ 75 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCC-----CCEEEESSSGGGCSCSCCCCC----SSCEEEEEE------
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCC-----eEEEEEccCCCCCcEEEEEec----CCceEEEEE------
Confidence 345799999999997 88887 4444 555555544321 1111122 234567777
Q ss_pred CCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 139 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 139 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
+|++++|++|+.||.|++|++.+.... ......+.+|...|.+++|+|++..+|++
T Consensus 76 -s~~~~~l~~~~~dg~v~vw~~~~~~~~-----------------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 131 (416)
T 2pm9_A 76 -SHNNKIIAGALDNGSLELYSTNEANNA-----------------------INSMARFSNHSSSVKTVKFNAKQDNVLAS 131 (416)
T ss_dssp -CSSSSCEEEEESSSCEEEECCSSTTSC-----------------------CCEEEECCCSSSCCCEEEECSSSTTBEEE
T ss_pred -CCCCCeEEEEccCCeEEEeeccccccc-----------------------ccchhhccCCccceEEEEEcCCCCCEEEE
Confidence 899999999999999999999752211 11233456899999999999985579999
Q ss_pred EeCCCcEEEEeCCCCe------EEEE---EcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEee----
Q 013827 219 ASADKQVKIWDVAAGK------CNLT---LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---- 285 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~------~~~~---~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---- 285 (436)
++.|+.|++||+.+++ .... +..|...|.+++|+|++..++++++.|+.|++||+++.+.......+
T Consensus 132 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 211 (416)
T 2pm9_A 132 GGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNS 211 (416)
T ss_dssp ECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSS
T ss_pred EcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccccc
Confidence 9999999999999876 3333 36789999999999995589999999999999999987766544444
Q ss_pred --eCCeeEEEeCCCCCcEEEEEeCCC---cEEEEeCCCCCCCCCCCCCcccEEEe-ccCCCeEEEEecC-CCCCEEEEEe
Q 013827 286 --AADVESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCTISYNP-LVPNLLATGS 358 (436)
Q Consensus 286 --~~~i~~~~~~~~~~~~~~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p-~~~~~l~~~~ 358 (436)
...+.+++|+|++..++++++.|+ .|++||+++.. .+...+. .|...|.+++|+| ++ .+|++++
T Consensus 212 ~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~ 282 (416)
T 2pm9_A 212 GIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN--------TPLQTLNQGHQKGILSLDWCHQDE-HLLLSSG 282 (416)
T ss_dssp CCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT--------SCSBCCCSCCSSCEEEEEECSSCS-SCEEEEE
T ss_pred ccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC--------CCcEEeecCccCceeEEEeCCCCC-CeEEEEe
Confidence 688999999999878999999999 99999999862 3455666 8999999999999 66 8999999
Q ss_pred CCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccc
Q 013827 359 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 420 (436)
Q Consensus 359 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (436)
.|+.|++||+++++ .+..+..|...|.+++|+|+++.+|++++.||.|++||+.+.....
T Consensus 283 ~dg~v~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 283 RDNTVLLWNPESAE--QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp SSSEEEEECSSSCC--EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred CCCCEEEeeCCCCc--cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 99999999999887 5666778899999999999994479999999999999998876543
No 31
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.6e-39 Score=291.97 Aligned_cols=296 Identities=21% Similarity=0.284 Sum_probs=221.9
Q ss_pred Hhhcccceeeec-----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEEe
Q 013827 19 LYHSCFRCHKIS-----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARN 93 (436)
Q Consensus 19 ~~~~~~~~~~~~-----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 93 (436)
.+.++.|+|+++ +.|++++||+++...... ......+|.+.|.+++|+|++++|++++.
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~----------------~~~~~~~h~~~v~~~~~sp~g~~l~s~s~ 81 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC----------------KSVLSEGHQRTVRKVAWSPCGNYLASASF 81 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEE----------------EEEECSSCSSCEEEEEECTTSSEEEEEET
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCccee----------------eeeeccccCCcEEEEEECCCCCEEEEEEC
Confidence 466788999877 889999999987543210 00012368889999999999999999998
Q ss_pred cCCcceeEEEEEecCCCC--CCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceee
Q 013827 94 EDDVSHLEVYILEESDGG--DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVI 171 (436)
Q Consensus 94 ~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~ 171 (436)
++ .+.+|+..... ....+..|. ..+.+++| +|++++|++|+.|++|++||+.+.....
T Consensus 82 D~-----~v~iw~~~~~~~~~~~~~~~h~----~~v~~v~~-------sp~~~~l~s~s~D~~v~iwd~~~~~~~~---- 141 (345)
T 3fm0_A 82 DA-----TTCIWKKNQDDFECVTTLEGHE----NEVKSVAW-------APSGNLLATCSRDKSVWVWEVDEEDEYE---- 141 (345)
T ss_dssp TS-----CEEEEEECCC-EEEEEEECCCS----SCEEEEEE-------CTTSSEEEEEETTSCEEEEEECTTSCEE----
T ss_pred CC-----cEEEEEccCCCeEEEEEccCCC----CCceEEEE-------eCCCCEEEEEECCCeEEEEECCCCCCeE----
Confidence 87 55555544331 111222232 33467777 8999999999999999999997543322
Q ss_pred ecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCe--EEEEEcccCCCeEEE
Q 013827 172 LGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK--CNLTLEHHTDKVQAV 249 (436)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~ 249 (436)
....+.+|...|.+++|+|++ .+|++|+.|++|++||+.+++ +...+.+|...|.++
T Consensus 142 --------------------~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l 200 (345)
T 3fm0_A 142 --------------------CVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSL 200 (345)
T ss_dssp --------------------EEEEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred --------------------EEEEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEE
Confidence 122355799999999999996 599999999999999998875 456788999999999
Q ss_pred EEcCCCCCEEEEEECCCcEEEEecCCCCCcc---------------ceE-eeeCCeeEEEeCCCCCcEEEEEeCCCcEEE
Q 013827 250 AWNHHSPQILLSGSFDRSVVMKDARISTHSG---------------FKW-AVAADVESLAWDPHAEHSFVVSLEDGTIKG 313 (436)
Q Consensus 250 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---------------~~~-~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i 313 (436)
+|+|++ .+|++++.|++|++||........ ... .|...|.+++|+|++ ..+++++.|+.|++
T Consensus 201 ~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~v 278 (345)
T 3fm0_A 201 AFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT-GALATACGDDAIRV 278 (345)
T ss_dssp EECTTS-SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT-CCEEEEETTSCEEE
T ss_pred EECCCC-CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC-CEEEEEeCCCeEEE
Confidence 999999 899999999999999975432211 011 156789999999987 57999999999999
Q ss_pred EeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc
Q 013827 314 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 373 (436)
Q Consensus 314 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~ 373 (436)
|+....................+|...|++++|+|+++.+|++|+.||+|++|++.+.+.
T Consensus 279 w~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 279 FQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp EEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred EEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 998765322110000111223578999999999999867999999999999999988763
No 32
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.3e-38 Score=285.27 Aligned_cols=250 Identities=22% Similarity=0.305 Sum_probs=216.0
Q ss_pred cceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEE
Q 013827 127 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 206 (436)
Q Consensus 127 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 206 (436)
+.+++| +|++++|++|+.||+|+|||+.+++.... +..|...|.++
T Consensus 58 v~~~~~-------s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~---------------------------~~~~~~~v~~~ 103 (340)
T 1got_B 58 IYAMHW-------GTDSRLLLSASQDGKLIIWDSYTTNKVHA---------------------------IPLRSSWVMTC 103 (340)
T ss_dssp EEEEEE-------CTTSSEEEEEETTTEEEEEETTTCCEEEE---------------------------EECSSSCEEEE
T ss_pred eEEEEE-------CCCCCEEEEEeCCCcEEEEECCCCCcceE---------------------------eecCCccEEEE
Confidence 356777 89999999999999999999876544322 44688999999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCC----eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccce
Q 013827 207 AWNKEFRNILASASADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK 282 (436)
Q Consensus 207 ~~~~~~~~~l~s~~~dg~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 282 (436)
+|+|++ .+|++|+.|+.|++|++.++ +....+.+|...|.++.|++++ .+++++.|+.|++||+++.......
T Consensus 104 ~~s~~~-~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~ 180 (340)
T 1got_B 104 AYAPSG-NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTF 180 (340)
T ss_dssp EECTTS-SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EECCCC-CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEE
Confidence 999997 59999999999999999875 4566788999999999999887 4899999999999999998877767
Q ss_pred EeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCc
Q 013827 283 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM 362 (436)
Q Consensus 283 ~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~ 362 (436)
..|...|.+++|+|++ .++++|+.|+.|++||+++. .....+.+|...|++++|+|++ .+|++|+.|+.
T Consensus 181 ~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~---------~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~d~~ 249 (340)
T 1got_B 181 TGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREG---------MCRQTFTGHESDINAICFFPNG-NAFATGSDDAT 249 (340)
T ss_dssp CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTC---------SEEEEECCCSSCEEEEEECTTS-SEEEEEETTSC
T ss_pred cCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCC---------eeEEEEcCCcCCEEEEEEcCCC-CEEEEEcCCCc
Confidence 7889999999999987 68999999999999999987 6678889999999999999998 89999999999
Q ss_pred EEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccC
Q 013827 363 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 425 (436)
Q Consensus 363 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (436)
|++||+++.+.........+...|.+++|+|+++ +|++|+.||.|++||+.+++.+.....+
T Consensus 250 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~~~~h 311 (340)
T 1got_B 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGH 311 (340)
T ss_dssp EEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEEECCCCcEEEEEccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEcccCcEeeEeecC
Confidence 9999999877444433344456899999999999 5999999999999999988877655443
No 33
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.5e-38 Score=297.04 Aligned_cols=287 Identities=15% Similarity=0.162 Sum_probs=226.4
Q ss_pred ccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCC
Q 013827 73 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME 152 (436)
Q Consensus 73 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 152 (436)
.+.+..++|+|++++|++++.++ .+++|+............+ ....+..| ++++++||+|+.|
T Consensus 56 ~~~~~~~~~s~~g~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~-----~~~~~~~~-------~~~~~~l~~~~~d 118 (420)
T 3vl1_A 56 VDAGKGNTFEKVGSHLYKARLDG-----HDFLFNTIIRDGSKMLKRA-----DYTAVDTA-------KLQMRRFILGTTE 118 (420)
T ss_dssp CBCCTTCEEEEEETTEEEEEETT-----EEEEEECCSEETTTTSCSC-----CEEEEEEE-------CSSSCEEEEEETT
T ss_pred cccccceeeeecCCeEEEEEcCC-----cEEEEEecccceeeEEecC-----CceEEEEE-------ecCCCEEEEEECC
Confidence 34567899999999999999987 7788877654322222222 11122233 8999999999999
Q ss_pred CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 153 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 232 (436)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~ 232 (436)
|.|++||+.+++.. ..+.+|...|++++|+|++ .+|++|+.|+.|++||+.+
T Consensus 119 g~i~iwd~~~~~~~---------------------------~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~ 170 (420)
T 3vl1_A 119 GDIKVLDSNFNLQR---------------------------EIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKD 170 (420)
T ss_dssp SCEEEECTTSCEEE---------------------------EETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT
T ss_pred CCEEEEeCCCccee---------------------------eecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCC
Confidence 99999998754322 2245899999999999996 5999999999999999999
Q ss_pred CeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEe---ee---------------------CC
Q 013827 233 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---VA---------------------AD 288 (436)
Q Consensus 233 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~---------------------~~ 288 (436)
++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+++.+....... +. ..
T Consensus 171 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 249 (420)
T 3vl1_A 171 GSNPRTLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK 249 (420)
T ss_dssp CCCCEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred CcCceEEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence 99999999999999999999999 8999999999999999998765543332 22 44
Q ss_pred eeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE-eccCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 013827 289 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 367 (436)
Q Consensus 289 i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd 367 (436)
+.+++|+|++ .++++++.||.|++||+++. .....+ ..|...|.+++|+|++..+|++|+.||.|++||
T Consensus 250 v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd 319 (420)
T 3vl1_A 250 KNNLEFGTYG-KYVIAGHVSGVITVHNVFSK---------EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWD 319 (420)
T ss_dssp CCTTCSSCTT-EEEEEEETTSCEEEEETTTC---------CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred ccceEEcCCC-CEEEEEcCCCeEEEEECCCC---------ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 5555667866 68999999999999999987 334444 458899999999999944999999999999999
Q ss_pred CCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 368 LSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
+++++.........|...|.++.+. ++. +|++++.||.|++|++...+
T Consensus 320 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 320 LRSPECPVGEFLINEGTPINNVYFA-AGA-LFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp TTCTTSCSEEEEESTTSCEEEEEEE-TTE-EEEEETTTEEEEEEEECCTT
T ss_pred cCCCcCchhhhhccCCCCceEEEeC-CCC-EEEEecCCccEEEEeccCCC
Confidence 9987532222223367788888665 666 59999999999999998753
No 34
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.9e-38 Score=292.87 Aligned_cols=294 Identities=16% Similarity=0.142 Sum_probs=233.4
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCC--CCceeeecccccCcCcceeecccCCCCCCCCCcEEEE
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG--DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV 148 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 148 (436)
.|.+.|.+++|+|++++|++++.++ .|.+|+..... ....+..| ...+.+++| +|++++|++
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~-----~v~i~~~~~~~~~~~~~~~~h----~~~v~~~~~-------~~~~~~l~~ 69 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNH-----EVHIYEKSGNKWVQVHELKEH----NGQVTGVDW-------APDSNRIVT 69 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSS-----EEEEEEEETTEEEEEEEEECC----SSCEEEEEE-------ETTTTEEEE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCC-----EEEEEeCCCCcEEeeeeecCC----CCcccEEEE-------eCCCCEEEE
Confidence 3678899999999999999998776 67777665542 12222223 233467777 889999999
Q ss_pred eeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEE
Q 013827 149 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 228 (436)
Q Consensus 149 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vw 228 (436)
++.||.|++||+.+++... ...+..|...|.+++|+|++ .+|++++.|+.|++|
T Consensus 70 ~~~dg~i~vwd~~~~~~~~-------------------------~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~ 123 (372)
T 1k8k_C 70 CGTDRNAYVWTLKGRTWKP-------------------------TLVILRINRAARCVRWAPNE-KKFAVGSGSRVISIC 123 (372)
T ss_dssp EETTSCEEEEEEETTEEEE-------------------------EEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEE
T ss_pred EcCCCeEEEEECCCCeeee-------------------------eEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEE
Confidence 9999999999997543221 11234688999999999996 699999999999999
Q ss_pred eCCCCeE---EEE-EcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC------------------CCCCccceEeee
Q 013827 229 DVAAGKC---NLT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR------------------ISTHSGFKWAVA 286 (436)
Q Consensus 229 d~~~~~~---~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~------------------~~~~~~~~~~~~ 286 (436)
|+..++. ... ...|...|.+++|+|++ .+|++++.|+.|++||++ ..........+.
T Consensus 124 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (372)
T 1k8k_C 124 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC 202 (372)
T ss_dssp EEETTTTEEEEEEECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS
T ss_pred EecCCCcceeeeeeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC
Confidence 9988752 333 36789999999999998 899999999999999965 233333344677
Q ss_pred CCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEE
Q 013827 287 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 366 (436)
Q Consensus 287 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iw 366 (436)
..+.+++|+|++ .++++++.|+.|++||+++. ..+..+..|..++.+++|+|++ .+|+++ .|+.|++|
T Consensus 203 ~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~ 270 (372)
T 1k8k_C 203 GWVHGVCFSANG-SRVAWVSHDSTVCLADADKK---------MAVATLASETLPLLAVTFITES-SLVAAG-HDCFPVLF 270 (372)
T ss_dssp SCEEEEEECSSS-SEEEEEETTTEEEEEEGGGT---------TEEEEEECSSCCEEEEEEEETT-EEEEEE-TTSSCEEE
T ss_pred CeEEEEEECCCC-CEEEEEeCCCEEEEEECCCC---------ceeEEEccCCCCeEEEEEecCC-CEEEEE-eCCeEEEE
Confidence 889999999987 68999999999999999987 6678888999999999999998 777777 99999999
Q ss_pred ECCC--CCceeE------------------------------------Eee-CCCCCcEEEEEEc-CCC---CcEEEEEe
Q 013827 367 DLSN--NQPSCI------------------------------------ASR-NPKAGAVFSVAFS-EDS---PFVLAIGG 403 (436)
Q Consensus 367 d~~~--~~~~~~------------------------------------~~~-~~~~~~v~~~~~~-~~~---~~~l~s~~ 403 (436)
+++. ++.... ..+ .+|...|++++|+ ++| . +|++++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~-~l~s~~ 349 (372)
T 1k8k_C 271 TYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS-QFCTTG 349 (372)
T ss_dssp EEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS-EEEEEE
T ss_pred EccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee-eEEEec
Confidence 9987 321000 222 4789999999977 565 6 699999
Q ss_pred CCCcEEEEeCCCCcccc
Q 013827 404 SKGKLEIWDTLSDAGIS 420 (436)
Q Consensus 404 ~dg~i~iwd~~~~~~~~ 420 (436)
.||.|++||+.+++.+.
T Consensus 350 ~Dg~i~~W~~~~~~~~~ 366 (372)
T 1k8k_C 350 MDGGMSIWDVRSLESAL 366 (372)
T ss_dssp TTSEEEEEEHHHHHHHC
T ss_pred CCCceEEEEecChhHhh
Confidence 99999999998876654
No 35
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.5e-38 Score=293.07 Aligned_cols=291 Identities=13% Similarity=0.180 Sum_probs=235.3
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCC------CCceeeecccccCcCcceeecccCCCCCCCC-
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG------DPNLYVHHHIIIPAFPLCMAWLDCPLKDREK- 142 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~- 142 (436)
..|.+.|.+++|+| ++|++++.++ .|.+|+..... ....+..|. ..+.|++| +|+
T Consensus 13 ~~h~~~i~~~~~~~--~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~h~----~~v~~~~~-------~~~~ 74 (397)
T 1sq9_A 13 KAHDADIFSVSACN--SFTVSCSGDG-----YLKVWDNKLLDNENPKDKSYSHFVHK----SGLHHVDV-------LQAI 74 (397)
T ss_dssp SCSSSCEEEEEECS--SEEEEEETTS-----EEEEEESBCCTTCCGGGGEEEEECCT----TCEEEEEE-------EEEE
T ss_pred hhhhcCeEEEEecC--CeEEEEcCCC-----EEEEEECCCcccccCCCcceEEecCC----CcEEEEEE-------eccc
Confidence 47889999999999 7999998887 77777776653 112222232 33467777 778
Q ss_pred ---C---cEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCc-----ccceeEEEec--
Q 013827 143 ---G---NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH-----TDSVLGLAWN-- 209 (436)
Q Consensus 143 ---~---~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~-- 209 (436)
+ ++|++++.||.|++|++.+.+... ......+..| ...|.+++|+
T Consensus 75 ~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~ 132 (397)
T 1sq9_A 75 ERDAFELCLVATTSFSGDLLFYRITREDETK----------------------KVIFEKLDLLDSDMKKHSFWALKWGAS 132 (397)
T ss_dssp ETTTEEEEEEEEEETTSCEEEEEEEECTTTC----------------------CEEEEEECCSCTTGGGSCEEEEEEECC
T ss_pred ccCCccccEEEEEcCCCCEEEEEccCCcccc----------------------cccceeecccccccCCCcEEEEEEeec
Confidence 9 999999999999999997654311 0112234456 5899999999
Q ss_pred --CCCCcE-EEEEeCCCcEEEEeCCC------CeEEE-----EE-------cccCCCeEEEEEcCCCCCEEEEEECCCcE
Q 013827 210 --KEFRNI-LASASADKQVKIWDVAA------GKCNL-----TL-------EHHTDKVQAVAWNHHSPQILLSGSFDRSV 268 (436)
Q Consensus 210 --~~~~~~-l~s~~~dg~v~vwd~~~------~~~~~-----~~-------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 268 (436)
|++ .+ |++++.||.|++||+.+ ++.+. .+ ..|...|.+++|+|++ ++++++.|+.|
T Consensus 133 ~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i 209 (397)
T 1sq9_A 133 NDRLL-SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTV 209 (397)
T ss_dssp C-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEE
T ss_pred cCCCC-ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcE
Confidence 986 47 99999999999999988 65555 66 4488999999999998 89999999999
Q ss_pred EEEecCCCCCccceEe---e---eCCeeEEEeCCCCCcEEEEEeCC---CcEEEEeCCCCCCCCCCCCCcccEEEec---
Q 013827 269 VMKDARISTHSGFKWA---V---AADVESLAWDPHAEHSFVVSLED---GTIKGFDIRTAKSDPDSTSQQSSFTLHA--- 336 (436)
Q Consensus 269 ~~wd~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~~~~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~--- 336 (436)
++||+++......... | ...+.+++|+|++ .++++++.| +.|++||+++. ..+..+..
T Consensus 210 ~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~---------~~~~~~~~~~~ 279 (397)
T 1sq9_A 210 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFG---------ERIGSLSVPTH 279 (397)
T ss_dssp EEEETTTTEEEEEEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTC---------CEEEEECBC--
T ss_pred EEEECCCCceeEEEeccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCC---------cccceeccCcc
Confidence 9999998877665666 7 8899999999987 689999999 99999999987 56777887
Q ss_pred ----------cCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeC------CC---------------CCc
Q 013827 337 ----------HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN------PK---------------AGA 385 (436)
Q Consensus 337 ----------~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------~~---------------~~~ 385 (436)
|...|.+++|+|++ .+|++++.|+.|++||+++.+. +..+. .| ...
T Consensus 280 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 356 (397)
T 1sq9_A 280 SSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKER--ITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 356 (397)
T ss_dssp ------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEE--EEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred cccccccccccCCcEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCce--eEEEecccCcccchhhhhccccccccccCCc
Confidence 99999999999998 8999999999999999998874 44455 56 889
Q ss_pred EEEEEEcCCC----------CcEEEEEeCCCcEEEEeCCCCc
Q 013827 386 VFSVAFSEDS----------PFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 386 v~~~~~~~~~----------~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
|++++|+|++ + +|++++.||.|++|++.+++
T Consensus 357 v~~~~~~~~g~~~~~~~~~~~-~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 357 VFDVKFLKKGWRSGMGADLNE-SLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEEEEEECTTTSBSTTCTTSC-EEEEEETTTEEEEEEEEC--
T ss_pred eeEEEeccccccccccccccc-eEEEecCCCcEEEEEcCCCC
Confidence 9999999998 5 69999999999999998764
No 36
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.8e-37 Score=275.04 Aligned_cols=250 Identities=23% Similarity=0.335 Sum_probs=203.3
Q ss_pred cceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEE
Q 013827 127 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 206 (436)
Q Consensus 127 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 206 (436)
+.+++| +|+|++||+|+.|++|+|||+.... ......+.+|.+.|+++
T Consensus 12 V~~~~~-------s~~g~~las~s~D~~v~iw~~~~~~-------------------------~~~~~~l~gH~~~V~~v 59 (297)
T 2pm7_B 12 IHDAVM-------DYYGKRMATCSSDKTIKIFEVEGET-------------------------HKLIDTLTGHEGPVWRV 59 (297)
T ss_dssp EEEEEE-------CTTSSEEEEEETTSCEEEEEBCSSC-------------------------BCCCEEECCCSSCEEEE
T ss_pred eEEEEE-------CCCCCEEEEEeCCCEEEEEecCCCC-------------------------cEEEEEEccccCCeEEE
Confidence 346666 8999999999999999999986421 12233466899999999
Q ss_pred EecCC-CCcEEEEEeCCCcEEEEeCCCCe--EEEEEcccCCCeEEEEEcCC--CCCEEEEEECCCcEEEEecCCCCC--c
Q 013827 207 AWNKE-FRNILASASADKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTH--S 279 (436)
Q Consensus 207 ~~~~~-~~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~--~ 279 (436)
+|+|+ ...+|++|+.|++|++||+++++ .+..+.+|...|.+++|+|+ + .+|++++.|+.|++||++.... .
T Consensus 60 ~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 60 DWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp EECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBCC
T ss_pred EecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCceee
Confidence 99864 13699999999999999998874 56677889999999999997 6 8999999999999999987642 2
Q ss_pred cceEeeeCCeeEEEeCCCC------------CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEec
Q 013827 280 GFKWAVAADVESLAWDPHA------------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN 347 (436)
Q Consensus 280 ~~~~~~~~~i~~~~~~~~~------------~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 347 (436)
.....|...+.+++|+|++ ..++++|+.|+.|++||+++... .......+.+|...|.+++|+
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~-----~~~~~~~l~~H~~~V~~v~~s 213 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-----TYVLESTLEGHSDWVRDVAWS 213 (297)
T ss_dssp EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT-----EEEEEEEECCCSSCEEEEEEC
T ss_pred eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc-----eEEEEEEecCCCCceEEEEEC
Confidence 3345688899999999963 35899999999999999987521 012456788999999999999
Q ss_pred CCC--CCEEEEEeCCCcEEEEECCCCCce-eEEee--CCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 348 PLV--PNLLATGSTDKMVKLWDLSNNQPS-CIASR--NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 348 p~~--~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
|++ +.+|++++.|++|++||++..... ....+ ..|...|.+++|+|++++ |++++.||.|+||+...
T Consensus 214 p~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 214 PTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-LALSGGDNKVTLWKENL 285 (297)
T ss_dssp CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC-EEEEETTSCEEEEEECT
T ss_pred CCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCE-EEEEcCCCcEEEEEECC
Confidence 984 479999999999999999874321 11222 467789999999999995 99999999999999863
No 37
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-37 Score=284.58 Aligned_cols=290 Identities=13% Similarity=0.161 Sum_probs=240.2
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
.+|.+.|.+++|+|++++|++++.++ .|.+|+.........+..|. ..+.+++| +|++++|+++
T Consensus 29 ~~h~~~v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~h~----~~v~~~~~-------~~~~~~l~s~ 92 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEGDLLFSCSKDS-----SASVWYSLNGERLGTLDGHT----GTIWSIDV-------DCFTKYCVTG 92 (369)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEESSS-----CEEEEETTTCCEEEEECCCS----SCEEEEEE-------CTTSSEEEEE
T ss_pred EEeeceEEEEEEcCCCCEEEEEeCCC-----EEEEEeCCCchhhhhhhhcC----CcEEEEEE-------cCCCCEEEEE
Confidence 47889999999999999999998887 77778776653333333333 23456777 8999999999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCC-----Cc
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD-----KQ 224 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~ 224 (436)
+.||.|++||+.+++.... + .|...|.+++|+|++ .++++++.+ +.
T Consensus 93 ~~dg~i~iwd~~~~~~~~~---------------------------~-~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~ 143 (369)
T 3zwl_B 93 SADYSIKLWDVSNGQCVAT---------------------------W-KSPVPVKRVEFSPCG-NYFLAILDNVMKNPGS 143 (369)
T ss_dssp ETTTEEEEEETTTCCEEEE---------------------------E-ECSSCEEEEEECTTS-SEEEEEECCBTTBCCE
T ss_pred eCCCeEEEEECCCCcEEEE---------------------------e-ecCCCeEEEEEccCC-CEEEEecCCccCCCCE
Confidence 9999999999987554432 2 277889999999997 589999998 99
Q ss_pred EEEEeCCCCe-----------EEEEEcccCC--CeEEEEEcCCCCCEEEEEECCCcEEEEecCC-CCCccceEeeeCCee
Q 013827 225 VKIWDVAAGK-----------CNLTLEHHTD--KVQAVAWNHHSPQILLSGSFDRSVVMKDARI-STHSGFKWAVAADVE 290 (436)
Q Consensus 225 v~vwd~~~~~-----------~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~i~ 290 (436)
|++||+.... ....+..|.. .+.+++|+|++ .++++++.||.|++||+++ .........+...+.
T Consensus 144 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 222 (369)
T 3zwl_B 144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSIS 222 (369)
T ss_dssp EEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEE
T ss_pred EEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCcee
Confidence 9999987552 3344555665 99999999999 8999999999999999998 455555566888999
Q ss_pred EEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCC---------
Q 013827 291 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK--------- 361 (436)
Q Consensus 291 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~--------- 361 (436)
+++|+|++ .++++++.|+.|++||+++. .....+. +...+..++|+|++ .++++++.++
T Consensus 223 ~~~~~~~~-~~l~~~~~d~~i~v~d~~~~---------~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~ 290 (369)
T 3zwl_B 223 DMQFSPDL-TYFITSSRDTNSFLVDVSTL---------QVLKKYE-TDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSA 290 (369)
T ss_dssp EEEECTTS-SEEEEEETTSEEEEEETTTC---------CEEEEEE-CSSCEEEEEECSSS-SEEEEEECCC---------
T ss_pred EEEECCCC-CEEEEecCCceEEEEECCCC---------ceeeeec-CCCCceeEEecCCC-ceEEEeecCCCceEEEEec
Confidence 99999987 68999999999999999987 4455555 78889999999999 8999999888
Q ss_pred -----cEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccc
Q 013827 362 -----MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 420 (436)
Q Consensus 362 -----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (436)
.+++||+.+.+ .+..+.+|...|.+++|+|+++ +|++++.||.|++|++.++....
T Consensus 291 ~~~~~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 291 NEGKFEARFYHKIFEE--EIGRVQGHFGPLNTVAISPQGT-SYASGGEDGFIRLHHFEKSYFDF 351 (369)
T ss_dssp ----CEEEEEETTTCC--EEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEEECHHHHTC
T ss_pred CCCcceeEEEecCCCc--chhheecccCcEEEEEECCCCC-EEEEEcCCCeEEEEECccccchh
Confidence 89999999987 5566778999999999999999 59999999999999998766543
No 38
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=8.3e-38 Score=293.55 Aligned_cols=318 Identities=12% Similarity=0.109 Sum_probs=244.3
Q ss_pred cccceeeec-----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEEecCC
Q 013827 22 SCFRCHKIS-----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDD 96 (436)
Q Consensus 22 ~~~~~~~~~-----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~ 96 (436)
...|+|+.+ +.|+++++|++...+.... . .. ...+....|+|++++|++++.++
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~-----------------~--~~-~~~~~~~~~~~~~~~l~~~~~dg- 119 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM-----------------L--KR-ADYTAVDTAKLQMRRFILGTTEG- 119 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEETTTT-----------------S--CS-CCEEEEEEECSSSCEEEEEETTS-
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecccceeeE-----------------E--ec-CCceEEEEEecCCCEEEEEECCC-
Confidence 456777776 7789999998766554210 0 11 13455567899999999998887
Q ss_pred cceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccc
Q 013827 97 VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGID 176 (436)
Q Consensus 97 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~ 176 (436)
.|.+|+.........+.. ....+.+++| +|++++|++|+.||.|++||+.+++....
T Consensus 120 ----~i~iwd~~~~~~~~~~~~----h~~~v~~~~~-------~~~~~~l~s~s~d~~i~iwd~~~~~~~~~-------- 176 (420)
T 3vl1_A 120 ----DIKVLDSNFNLQREIDQA----HVSEITKLKF-------FPSGEALISSSQDMQLKIWSVKDGSNPRT-------- 176 (420)
T ss_dssp ----CEEEECTTSCEEEEETTS----SSSCEEEEEE-------CTTSSEEEEEETTSEEEEEETTTCCCCEE--------
T ss_pred ----CEEEEeCCCcceeeeccc----ccCccEEEEE-------CCCCCEEEEEeCCCeEEEEeCCCCcCceE--------
Confidence 777777665422111112 2344567777 89999999999999999999987554432
Q ss_pred hhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcc---cCCCeEEE----
Q 013827 177 EEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH---HTDKVQAV---- 249 (436)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~---~~~~v~~~---- 249 (436)
+.+|...|.+++|+|++ .+|++++.|+.|++||+.+++.+..+.. +...+.++
T Consensus 177 -------------------~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 236 (420)
T 3vl1_A 177 -------------------LIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFV 236 (420)
T ss_dssp -------------------EECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEE
T ss_pred -------------------EcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEec
Confidence 45799999999999996 5999999999999999999999888864 34444444
Q ss_pred -----------------EEcCCCCCEEEEEECCCcEEEEecCCCCCccceE-eeeCCeeEEEeCCCCCcEEEEEeCCCcE
Q 013827 250 -----------------AWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDGTI 311 (436)
Q Consensus 250 -----------------~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~dg~i 311 (436)
+|+|++ .++++++.||.|++||+++........ .+...+.+++|+|++..++++++.||.|
T Consensus 237 ~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i 315 (420)
T 3vl1_A 237 GTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGML 315 (420)
T ss_dssp CCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred CCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeE
Confidence 457888 899999999999999999887655443 3678899999999986699999999999
Q ss_pred EEEeCCCCCCCCCCCCCcccEEEec-cCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCce-------eEEeeCCCC
Q 013827 312 KGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS-------CIASRNPKA 383 (436)
Q Consensus 312 ~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~-------~~~~~~~~~ 383 (436)
++||+++.. .++..+.. |...+.++.+. ++ .+|++++.|+.|++|++...... .......|.
T Consensus 316 ~vwd~~~~~--------~~~~~~~~~~~~~v~~~~~~-~~-~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 385 (420)
T 3vl1_A 316 AQWDLRSPE--------CPVGEFLINEGTPINNVYFA-AG-ALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSND 385 (420)
T ss_dssp EEEETTCTT--------SCSEEEEESTTSCEEEEEEE-TT-EEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSS
T ss_pred EEEEcCCCc--------CchhhhhccCCCCceEEEeC-CC-CEEEEecCCccEEEEeccCCCCCccceeccCccEEccCC
Confidence 999999862 34566666 67778888655 56 79999999999999998773210 122345678
Q ss_pred CcEEEEEEcCCCC---cEEEEEeCCCcEEEEeCCC
Q 013827 384 GAVFSVAFSEDSP---FVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 384 ~~v~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~ 415 (436)
+.|.+++|+|+++ . +++.+.+|.+.+|++.+
T Consensus 386 ~~v~~~~~s~~~~~~g~-l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 386 DAVSQFCYVSDDESNGE-VLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCCCEEEEECCSSSSCE-EEEEETTTEEEEEESCC
T ss_pred cceEEEEEccCCCCcce-EEEEcCCceEEEEeccC
Confidence 8999999999998 6 45577889999999875
No 39
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.9e-37 Score=286.30 Aligned_cols=290 Identities=13% Similarity=0.135 Sum_probs=222.8
Q ss_pred CCCccccccceeccCC-ceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCC-CCcEEE
Q 013827 70 DEDSEDLEDMTINPND-AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE-KGNFMA 147 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~-~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~ 147 (436)
..|.+.|.+++|+|++ ++|++++.++ .|.+|+............ ......+.+++| +| ++++|+
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~--~~h~~~v~~~~~-------~~~~~~~l~ 135 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGG-----DIILWDYDVQNKTSFIQG--MGPGDAITGMKF-------NQFNTNQLF 135 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTS-----CEEEEETTSTTCEEEECC--CSTTCBEEEEEE-------ETTEEEEEE
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCC-----eEEEEeCCCcccceeeec--CCcCCceeEEEe-------CCCCCCEEE
Confidence 4688999999999999 8999999887 677777765532222211 112234467777 77 789999
Q ss_pred EeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEE
Q 013827 148 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 227 (436)
Q Consensus 148 ~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~v 227 (436)
+++.|+.|++||+.+ ..... .....+|...|.+++|+|++ .+|++|+.|+.|++
T Consensus 136 s~~~d~~i~iwd~~~-~~~~~------------------------~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i 189 (383)
T 3ei3_B 136 VSSIRGATTLRDFSG-SVIQV------------------------FAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLL 189 (383)
T ss_dssp EEETTTEEEEEETTS-CEEEE------------------------EECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEE
T ss_pred EEeCCCEEEEEECCC-CceEE------------------------EeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEE
Confidence 999999999999974 11111 11123466889999999996 59999999999999
Q ss_pred EeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCC---ccceEeeeCCeeEEEeCC-CCCcEEE
Q 013827 228 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH---SGFKWAVAADVESLAWDP-HAEHSFV 303 (436)
Q Consensus 228 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~i~~~~~~~-~~~~~~~ 303 (436)
||+ +++.+..+..|...|.+++|+|++..++++++.|+.|++||+++... ......+...+.+++|+| ++ .+++
T Consensus 190 ~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~~l~ 267 (383)
T 3ei3_B 190 LGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDS-TKLL 267 (383)
T ss_dssp EET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTS-CEEE
T ss_pred EEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCC-CEEE
Confidence 999 57788889999999999999999944999999999999999998432 222347889999999999 76 6899
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccC-----------------CCeEEEEecCCCCCEEEEEeCCCcEEEE
Q 013827 304 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-----------------KAVCTISYNPLVPNLLATGSTDKMVKLW 366 (436)
Q Consensus 304 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-----------------~~v~~~~~~p~~~~~l~~~~~d~~i~iw 366 (436)
+++.|+.|++||+++... ...+..|. ..+..++|+|++ .+ +++.|+.|++|
T Consensus 268 ~~~~d~~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg-~~--s~s~d~~i~iw 335 (383)
T 3ei3_B 268 TTDQRNEIRVYSSYDWSK---------PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD-QL--LLNDKRTIDIY 335 (383)
T ss_dssp EEESSSEEEEEETTBTTS---------CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCT-TT--CTTCCCCEEEE
T ss_pred EEcCCCcEEEEECCCCcc---------ccccccccccccccccceEEeccCCCCceEEEecCCc-cc--ccCCCCeEEEE
Confidence 999999999999998732 33333222 344556677766 44 77789999999
Q ss_pred ECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 367 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 367 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
|+.+++.........|.+.+..++|+|+++ +|++++ ||.|+|||+.+
T Consensus 336 d~~~~~~~~~l~~~~~~~~~~~~~~s~~g~-~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 336 DANSGGLVHQLRDPNAAGIISLNKFSPTGD-VLASGM-GFNILIWNRED 382 (383)
T ss_dssp ETTTCCEEEEECBTTBCSCCCEEEECTTSS-EEEEEE-TTEEEEEECC-
T ss_pred ecCCCceeeeecCCCCCceEEEEEEecCcc-EEEEec-CCcEEEEecCC
Confidence 999988433333233567788889999999 588886 99999999875
No 40
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.5e-37 Score=278.43 Aligned_cols=292 Identities=14% Similarity=0.151 Sum_probs=235.3
Q ss_pred CccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeC
Q 013827 72 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 151 (436)
Q Consensus 72 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 151 (436)
+.+.|.+++|+|||++++++...+. +..|.............| ...+.+++| +|++++|++++
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~h----~~~v~~~~~-------~~~~~~l~~~~- 70 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDA-----LIGPGIPRHARQINTLNH----GEVVCAVTI-------SNPTRHVYTGG- 70 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTS-----SSSTTCCSEEEEEEEECC----SSCCCEEEE-------CSSSSEEEEEC-
T ss_pred cCCceeEEEECCCCCEEEeecCCCc-----EeccccCCccccceeccC----CCceEEEEE-------ecCCcEEEEcC-
Confidence 3567999999999999998876552 222211111000111122 334467777 89999999999
Q ss_pred CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCC
Q 013827 152 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 231 (436)
Q Consensus 152 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~ 231 (436)
||.|++|++.+.+....... ....+|...|.+++|+|++ .+|++++.|+.|++||+.
T Consensus 71 dg~i~iw~~~~~~~~~~~~~----------------------~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~ 127 (337)
T 1gxr_A 71 KGCVKVWDISHPGNKSPVSQ----------------------LDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp BSEEEEEETTSTTCCSCSEE----------------------EECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECC
T ss_pred CCeEEEEECCCCCceeeeec----------------------ccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECC
Confidence 99999999987554332211 1122688999999999996 599999999999999999
Q ss_pred CCe--EEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCC
Q 013827 232 AGK--CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG 309 (436)
Q Consensus 232 ~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg 309 (436)
+++ ....+..|...|.+++|+|++ .++++++.|+.|++||+++.+.......+...+.+++|+|++ ..+++++.||
T Consensus 128 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg 205 (337)
T 1gxr_A 128 APTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG-TKLWTGGLDN 205 (337)
T ss_dssp CC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTS
T ss_pred CCCcceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC-CEEEEEecCC
Confidence 877 566778899999999999998 899999999999999999887776666788999999999987 6899999999
Q ss_pred cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEE
Q 013827 310 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV 389 (436)
Q Consensus 310 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 389 (436)
.|++||+++. .....+ .+...+.+++|+|++ .+|++++.++.|++||+++.+ ......|...|.++
T Consensus 206 ~i~~~d~~~~---------~~~~~~-~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~~~v~~~ 271 (337)
T 1gxr_A 206 TVRSWDLREG---------RQLQQH-DFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPD---KYQLHLHESCVLSL 271 (337)
T ss_dssp EEEEEETTTT---------EEEEEE-ECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSC---EEEECCCSSCEEEE
T ss_pred cEEEEECCCC---------ceEeee-cCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCC---eEEEcCCccceeEE
Confidence 9999999986 434444 478889999999998 899999999999999999876 34567888999999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCCCcccc
Q 013827 390 AFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 420 (436)
Q Consensus 390 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (436)
+|+|+++ +|++++.||.|++||+.+++.+.
T Consensus 272 ~~~~~~~-~l~~~~~dg~i~~~~~~~~~~~~ 301 (337)
T 1gxr_A 272 KFAYCGK-WFVSTGKDNLLNAWRTPYGASIF 301 (337)
T ss_dssp EECTTSS-EEEEEETTSEEEEEETTTCCEEE
T ss_pred EECCCCC-EEEEecCCCcEEEEECCCCeEEE
Confidence 9999999 58999999999999999988763
No 41
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.3e-36 Score=277.03 Aligned_cols=294 Identities=17% Similarity=0.260 Sum_probs=227.7
Q ss_pred CCCccccccceeccC-CceEEEEEecCCcceeEEEEEecCCCCCCce-eeecccccCcCcceeecccCCCCCCCCCcEEE
Q 013827 70 DEDSEDLEDMTINPN-DAVIVCARNEDDVSHLEVYILEESDGGDPNL-YVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA 147 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~-~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 147 (436)
.+|.+.|++++|+|+ +++|++|+.|+ .|.+|+......... ....-......+.++.| +|++++|+
T Consensus 35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~-----~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~-------s~dg~~l~ 102 (340)
T 4aow_A 35 KGHNGWVTQIATTPQFPDMILSASRDK-----TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI-------SSDGQFAL 102 (340)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTS-----CEEEEEECCSSSCSEEEEEEECCCSSCEEEEEE-------CTTSSEEE
T ss_pred CCccCCEEEEEEeCCCCCEEEEEcCCC-----eEEEEECCCCCcccceeeEEEeCCCCCEEEEEE-------CCCCCEEE
Confidence 479999999999998 57899998886 455555443321111 11110111234467777 89999999
Q ss_pred EeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEE
Q 013827 148 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 227 (436)
Q Consensus 148 ~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~v 227 (436)
+|+.|+.|++|+......... ...+...+..+.+++++ .+|++++.|+.+++
T Consensus 103 s~~~d~~i~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~ 154 (340)
T 4aow_A 103 SGSWDGTLRLWDLTTGTTTRR---------------------------FVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKL 154 (340)
T ss_dssp EEETTSEEEEEETTTTEEEEE---------------------------EECCSSCEEEEEECTTS-SCEEEEETTSCEEE
T ss_pred EEcccccceEEeecccceeee---------------------------ecCCCCceeEEEEeecC-ccceeecCCCeEEE
Confidence 999999999999875433222 33577788899999996 58999999999999
Q ss_pred EeCCCCeEE-EEEcccCCCeEEEEEcCCCC-CEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEE
Q 013827 228 WDVAAGKCN-LTLEHHTDKVQAVAWNHHSP-QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS 305 (436)
Q Consensus 228 wd~~~~~~~-~~~~~~~~~v~~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 305 (436)
||+...... ....+|...+..++|++++. .++++++.|+.|++||+++.........|...|++++|+|++ .++++|
T Consensus 155 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~ 233 (340)
T 4aow_A 155 WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG-SLCASG 233 (340)
T ss_dssp ECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEE
T ss_pred EEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCC-CEEEEE
Confidence 999866543 34467899999999998753 467899999999999999988877777889999999999987 689999
Q ss_pred eCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeE-------Ee
Q 013827 306 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI-------AS 378 (436)
Q Consensus 306 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~-------~~ 378 (436)
+.|+.|++||+++. ..+..+. +...+.++.|+|++ . +++++.|+.|++||+++...... ..
T Consensus 234 s~Dg~i~iwd~~~~---------~~~~~~~-~~~~v~~~~~~~~~-~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 301 (340)
T 4aow_A 234 GKDGQAMLWDLNEG---------KHLYTLD-GGDIINALCFSPNR-Y-WLCAATGPSIKIWDLEGKIIVDELKQEVISTS 301 (340)
T ss_dssp ETTCEEEEEETTTT---------EEEEEEE-CSSCEEEEEECSSS-S-EEEEEETTEEEEEETTTTEEEEEECCC-----
T ss_pred eCCCeEEEEEeccC---------ceeeeec-CCceEEeeecCCCC-c-eeeccCCCEEEEEECCCCeEEEeccccceeee
Confidence 99999999999987 5555555 45689999999976 4 55666799999999987653211 12
Q ss_pred eCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 379 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 379 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
...|...|++++|+|+++ +|++|+.||.|+|||+.+|+
T Consensus 302 ~~~h~~~v~~l~~s~dg~-~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 302 SKAEPPQCTSLAWSADGQ-TLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp --CCCCCEEEEEECTTSS-EEEEEETTSCEEEEEEEC--
T ss_pred ccCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEeCCCcC
Confidence 346888999999999999 58999999999999999885
No 42
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-37 Score=289.71 Aligned_cols=290 Identities=16% Similarity=0.273 Sum_probs=237.4
Q ss_pred CCCccccccceeccCCc-eEEEEEecCCcceeEEEEEec----CCCCC-----Cceeeecccc-------cCcCcceeec
Q 013827 70 DEDSEDLEDMTINPNDA-VIVCARNEDDVSHLEVYILEE----SDGGD-----PNLYVHHHII-------IPAFPLCMAW 132 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~-~l~~~~~~~~~~~~~v~~~~~----~~~~~-----~~~~~~~~~~-------~~~~~~~~~~ 132 (436)
..|.+.|.+++|+|+++ +|++++.++ .|.+|+. ..+.. ......+... ....+.|++|
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNS-----VARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAW 116 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBT-----EEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEE
T ss_pred eeccCceEEEEECCCCCcEEEEecCCc-----eEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEE
Confidence 35568999999999999 999998876 6666666 44421 1111111111 1224567777
Q ss_pred ccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCC
Q 013827 133 LDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF 212 (436)
Q Consensus 133 ~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 212 (436)
+|++++|++|+.||.|++||.. ++ ....+.+|...|.+++|+|++
T Consensus 117 -------s~~~~~l~~~~~dg~i~i~~~~-~~---------------------------~~~~~~~~~~~v~~~~~~~~~ 161 (425)
T 1r5m_A 117 -------SHDGNSIVTGVENGELRLWNKT-GA---------------------------LLNVLNFHRAPIVSVKWNKDG 161 (425)
T ss_dssp -------CTTSSEEEEEETTSCEEEEETT-SC---------------------------EEEEECCCCSCEEEEEECTTS
T ss_pred -------cCCCCEEEEEeCCCeEEEEeCC-CC---------------------------eeeeccCCCccEEEEEECCCC
Confidence 8999999999999999999933 22 222355799999999999996
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCC---------------eEEEEEcCCCCCEEEEEECCCcEEEEecCCCC
Q 013827 213 RNILASASADKQVKIWDVAAGKCNLTLEHHTDK---------------VQAVAWNHHSPQILLSGSFDRSVVMKDARIST 277 (436)
Q Consensus 213 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 277 (436)
.+|++++.|+.|++||+.+++.+..+..+... +.++.|++++ .+++++.++.|++||+++..
T Consensus 162 -~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~ 238 (425)
T 1r5m_A 162 -THIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKT 238 (425)
T ss_dssp -SEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSS
T ss_pred -CEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCc
Confidence 59999999999999999999999988877776 9999999976 58899999999999999988
Q ss_pred CccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEE
Q 013827 278 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG 357 (436)
Q Consensus 278 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 357 (436)
.......+...+.+++|+|++ .++++++.|+.|++||+++. .....+..|...|.+++|+|++ +++++
T Consensus 239 ~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~--~l~~~ 306 (425)
T 1r5m_A 239 PTGKLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNG---------NSQNCFYGHSQSIVSASWVGDD--KVISC 306 (425)
T ss_dssp CSEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSB---------SCSEEECCCSSCEEEEEEETTT--EEEEE
T ss_pred eeeeeccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCC---------ccceEecCCCccEEEEEECCCC--EEEEE
Confidence 777677888999999999987 58999999999999999986 5677888899999999999986 99999
Q ss_pred eCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 358 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 358 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
+.|+.|++||+++++ .+..+..|...|.+++|+|+++ +|++++.||.|++||+.+++
T Consensus 307 ~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 307 SMDGSVRLWSLKQNT--LLALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp ETTSEEEEEETTTTE--EEEEEECTTCCEEEEEECTTSS-EEEEEETTSCEEEEECHHHH
T ss_pred eCCCcEEEEECCCCc--EeEecccCCccEEEEEEcCCCC-EEEEEECCCeEEEEECCCCc
Confidence 999999999999877 4556677888999999999999 58999999999999998877
No 43
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-38 Score=294.15 Aligned_cols=293 Identities=17% Similarity=0.220 Sum_probs=223.0
Q ss_pred HHHHHHHhhcccceeeec-----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCce
Q 013827 13 LEEILRLYHSCFRCHKIS-----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAV 87 (436)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~-----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 87 (436)
|+.|...+.++.|+|+.+ +.|++++||++......... ..|...|.+++|+|++++
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~-------------------~~h~~~v~~~~~s~~g~~ 122 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-------------------KLHCPWVMECAFAPNGQS 122 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE-------------------ECCCTTCCCCEECTTSSE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE-------------------ecCCCCEEEEEECCCCCE
Confidence 444556678888999876 89999999988654432111 246678999999999999
Q ss_pred EEEEEecCCcceeEEEEEecCCCC-----CCceeeecccccCcCcceeecccCCCCCCCC-CcEEEEeeCCCcEEEEeCC
Q 013827 88 IVCARNEDDVSHLEVYILEESDGG-----DPNLYVHHHIIIPAFPLCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLD 161 (436)
Q Consensus 88 l~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~vw~~~ 161 (436)
|++++.++.+ .+|.+...... ....+..|... +.++.| +|+ +.+|++|+.|++|++||+.
T Consensus 123 las~~~d~~v---~iw~~~~~~~~~~~~~~~~~~~gh~~~----v~~~~~-------~~~~~~~l~s~s~D~~i~~wd~~ 188 (380)
T 3iz6_a 123 VACGGLDSAC---SIFNLSSQADRDGNMPVSRVLTGHKGY----ASSCQY-------VPDQETRLITGSGDQTCVLWDVT 188 (380)
T ss_dssp EEECCSSSCC---EEEECCCCSSCCCSSTTCCBCCCCSSC----CCCCBC-------CSSSSSCEEEECTTSCEEEECTT
T ss_pred EEEeeCCCcE---EEEECCCCccccCCccceeeccCCCcc----eEEEEE-------ecCCCCEEEEECCCCcEEEEEcC
Confidence 9999988733 44444322111 11122233222 233444 565 5679999999999999998
Q ss_pred CCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCC-CCeEEEEEc
Q 013827 162 VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA-AGKCNLTLE 240 (436)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~-~~~~~~~~~ 240 (436)
+++...... .....+|...|.+++|++.+..+|++|+.|++|++||++ .++.+..+.
T Consensus 189 ~~~~~~~~~----------------------~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~ 246 (380)
T 3iz6_a 189 TGQRISIFG----------------------SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH 246 (380)
T ss_dssp TCCEEEEEC----------------------CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC
T ss_pred CCcEEEEee----------------------cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC
Confidence 765443210 011247999999999988445799999999999999997 457788899
Q ss_pred ccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEee-------eCCeeEEEeCCCCCcEEEEEeCCCcEEE
Q 013827 241 HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-------AADVESLAWDPHAEHSFVVSLEDGTIKG 313 (436)
Q Consensus 241 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~dg~i~i 313 (436)
+|...|.+++|+|++ .+|++++.|++|++||++++........+ ...+.+++|+|++ .++++|+.||.|++
T Consensus 247 ~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~v 324 (380)
T 3iz6_a 247 GHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYV 324 (380)
T ss_dssp CCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEE
T ss_pred CcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCC-CEEEEEECCCCEEE
Confidence 999999999999999 89999999999999999987655433222 2348999999987 68999999999999
Q ss_pred EeCCCCCCCCCCCCCcccEEE----eccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 013827 314 FDIRTAKSDPDSTSQQSSFTL----HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 314 ~d~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
||+... .....+ .+|...|++++|+|++ .+|++|+.|++|++|++...+
T Consensus 325 wd~~~~---------~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 325 WDTLLA---------EMVLNLGTLQNSHEGRISCLGLSSDG-SALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EETTTC---------CEEEEECCSCSSCCCCCCEEEECSSS-SEEEEECTTSCEEEEECCSSS
T ss_pred EECCCC---------ceEEEEecccCCCCCceEEEEECCCC-CEEEEeeCCCCEEEEecCCCc
Confidence 999876 444444 5799999999999999 899999999999999998654
No 44
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7e-37 Score=280.14 Aligned_cols=252 Identities=21% Similarity=0.310 Sum_probs=216.0
Q ss_pred cceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEE
Q 013827 127 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 206 (436)
Q Consensus 127 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 206 (436)
+.|++| +|++++||+|+.||+|+|||..+.+.... +..|...|.++
T Consensus 67 V~~~~~-------s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~---------------------------~~~~~~~v~~~ 112 (354)
T 2pbi_B 67 VLCMDW-------CKDKRRIVSSSQDGKVIVWDSFTTNKEHA---------------------------VTMPCTWVMAC 112 (354)
T ss_dssp EEEEEE-------CTTSSEEEEEETTSEEEEEETTTCCEEEE---------------------------EECSSSCCCEE
T ss_pred EEEEEE-------CCCCCEEEEEeCCCeEEEEECCCCCcceE---------------------------EecCCCCEEEE
Confidence 367877 89999999999999999999876443322 33578899999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCC------eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc
Q 013827 207 AWNKEFRNILASASADKQVKIWDVAAG------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG 280 (436)
Q Consensus 207 ~~~~~~~~~l~s~~~dg~v~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 280 (436)
+|+|+| .+|++|+.|+.+++|++... .....+.+|...|.+++|+|++ ..|++++.|++|++||+++.+...
T Consensus 113 ~~sp~g-~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~~ 190 (354)
T 2pbi_B 113 AYAPSG-CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLLQ 190 (354)
T ss_dssp EECTTS-SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEE
T ss_pred EECCCC-CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEEE
Confidence 999997 59999999999999998643 3456677899999999999998 899999999999999999988877
Q ss_pred ceEeeeCCeeEEEeCCCC-CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeC
Q 013827 281 FKWAVAADVESLAWDPHA-EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 359 (436)
Q Consensus 281 ~~~~~~~~i~~~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 359 (436)
....|...+.+++|+|.. +.++++|+.||.|++||++++ ..+..+..|...|++++|+|++ .+|++++.
T Consensus 191 ~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~---------~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~ 260 (354)
T 2pbi_B 191 SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG---------QCVQAFETHESDVNSVRYYPSG-DAFASGSD 260 (354)
T ss_dssp EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTS-SEEEEEET
T ss_pred EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC---------cEEEEecCCCCCeEEEEEeCCC-CEEEEEeC
Confidence 777889999999998853 369999999999999999987 6678889999999999999998 89999999
Q ss_pred CCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccC
Q 013827 360 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 425 (436)
Q Consensus 360 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (436)
|++|++||++..+.........+...+.+++|+|+++ +|++|+.|+.|++||+.+++.+.....+
T Consensus 261 D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~l~~h 325 (354)
T 2pbi_B 261 DATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKGSRVSILFGH 325 (354)
T ss_dssp TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred CCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCCCceEEEEECC
Confidence 9999999999876444433334455789999999999 5899999999999999998877665443
No 45
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-36 Score=271.91 Aligned_cols=286 Identities=18% Similarity=0.223 Sum_probs=235.0
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
..|.+.|.+++| |++++|++++.++ .|.+|+............| .....+++| +|++++|++|
T Consensus 15 ~~h~~~v~~~~~-~~~~~l~s~~~dg-----~v~vw~~~~~~~~~~~~~~----~~~v~~~~~-------~~~~~~l~~~ 77 (313)
T 3odt_A 15 KGHDQDVRDVVA-VDDSKVASVSRDG-----TVRLWSKDDQWLGTVVYTG----QGFLNSVCY-------DSEKELLLFG 77 (313)
T ss_dssp CCCSSCEEEEEE-EETTEEEEEETTS-----EEEEEEESSSEEEEEEEEC----SSCEEEEEE-------ETTTTEEEEE
T ss_pred hCCCCCcEEEEe-cCCCEEEEEEcCC-----cEEEEECCCCEEEEEeecC----CccEEEEEE-------CCCCCEEEEe
Confidence 478899999999 9999999999887 7777777654333333333 334467777 8999999999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+.||.|++|++...... .....+.+|...|.+++|. + .++++++.||.|++||
T Consensus 78 ~~dg~i~~~~~~~~~~~------------------------~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d 130 (313)
T 3odt_A 78 GKDTMINGVPLFATSGE------------------------DPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWK 130 (313)
T ss_dssp ETTSCEEEEETTCCTTS------------------------CC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEE
T ss_pred cCCCeEEEEEeeecCCC------------------------CcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEc
Confidence 99999999999754322 2223356899999999994 3 4899999999999999
Q ss_pred CCCCeEEEEEcccCCCeEEEEEcC-CCCCEEEEEECCCcEEEEecCCCCCccceEe-eeCCeeEEEeCCCCCcEEEEEeC
Q 013827 230 VAAGKCNLTLEHHTDKVQAVAWNH-HSPQILLSGSFDRSVVMKDARISTHSGFKWA-VAADVESLAWDPHAEHSFVVSLE 307 (436)
Q Consensus 230 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~ 307 (436)
.++....+..|...+.++.|.| ++ ..+++++.|+.|++||.. ........ +...+.+++|+|++. +++++.
T Consensus 131 --~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~ 203 (313)
T 3odt_A 131 --EGSLVYNLQAHNASVWDAKVVSFSE-NKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGH--FISCSN 203 (313)
T ss_dssp --TTEEEEEEECCSSCEEEEEEEETTT-TEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEETTE--EEEEET
T ss_pred --CCcEEEecccCCCceeEEEEccCCC-CEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCCCe--EEEccC
Confidence 6778888889999999999998 55 899999999999999933 22222233 778899999999873 999999
Q ss_pred CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEE
Q 013827 308 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF 387 (436)
Q Consensus 308 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 387 (436)
||.|++||+++. ..+..+..|...|++++|+|++ .|++++.|+.|++||+++++ ....+..|...|.
T Consensus 204 dg~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~i~ 270 (313)
T 3odt_A 204 DGLIKLVDMHTG---------DVLRTYEGHESFVYCIKLLPNG--DIVSCGEDRTVRIWSKENGS--LKQVITLPAISIW 270 (313)
T ss_dssp TSEEEEEETTTC---------CEEEEEECCSSCEEEEEECTTS--CEEEEETTSEEEEECTTTCC--EEEEEECSSSCEE
T ss_pred CCeEEEEECCch---------hhhhhhhcCCceEEEEEEecCC--CEEEEecCCEEEEEECCCCc--eeEEEeccCceEE
Confidence 999999999987 6688889999999999999987 48899999999999999987 4556677888999
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 388 SVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 388 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
+++|+|+++ +++++.||.|++||+.+++.+..
T Consensus 271 ~~~~~~~~~--~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 271 SVDCMSNGD--IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp EEEECTTSC--EEEEETTSCEEEEESCGGGCCC-
T ss_pred EEEEccCCC--EEEEeCCCcEEEEeCCCCceeeh
Confidence 999999998 45699999999999998876654
No 46
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-38 Score=292.57 Aligned_cols=291 Identities=11% Similarity=0.177 Sum_probs=212.7
Q ss_pred CccccccceeccCCceEEEEEecCCcceeEEEEEecCCC--CCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 72 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG--GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 72 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
+.+.|.+++|+|++++|++++.++ .|.+|+.... .....+..|. ..+.+++| +|++++|++|
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~-----~i~iw~~~~~~~~~~~~~~~h~----~~v~~~~~-------s~~~~~l~s~ 73 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATN-----QVELYEQDGNGWKHARTFSDHD----KIVTCVDW-------APKSNRIVTC 73 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSS-----CBCEEEEETTEEEECCCBCCCS----SCEEEEEE-------CTTTCCEEEE
T ss_pred CCCcEEEEEECCCCCEEEEecCCC-----EEEEEEccCCceEEEEEEecCC----ceEEEEEE-------eCCCCEEEEE
Confidence 456899999999999999998776 4444444432 1222233332 23467777 8999999999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+.||.|++||+.+++... ....+.+|...|.+++|+|++ .+|++++.|+.|++||
T Consensus 74 s~d~~v~vwd~~~~~~~~------------------------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd 128 (377)
T 3dwl_C 74 SQDRNAYVYEKRPDGTWK------------------------QTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCY 128 (377)
T ss_dssp ETTSSEEEC------CCC------------------------CEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECC
T ss_pred eCCCeEEEEEcCCCCcee------------------------eeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEE
Confidence 999999999998655111 122355799999999999996 5999999999999999
Q ss_pred CCCCe---EEEEEcc-cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC------------------CccceEeeeC
Q 013827 230 VAAGK---CNLTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST------------------HSGFKWAVAA 287 (436)
Q Consensus 230 ~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~------------------~~~~~~~~~~ 287 (436)
+++++ ....+.. |...|.+++|+|++ .+|++++.|+.|++||++... ..... .|..
T Consensus 129 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 206 (377)
T 3dwl_C 129 FEQENDWWVSKHLKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG 206 (377)
T ss_dssp C-----CCCCEEECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS
T ss_pred ECCcccceeeeEeecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc
Confidence 99877 4677777 99999999999999 899999999999999986322 12222 6788
Q ss_pred CeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 013827 288 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 367 (436)
Q Consensus 288 ~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd 367 (436)
.+.+++|+|++ .++++++.||.|++||+++.... ...+..+..|...|.+++|+|++ .+|++++.++.+ +|+
T Consensus 207 ~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~ 278 (377)
T 3dwl_C 207 WVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQP-----PRALITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQ 278 (377)
T ss_dssp SEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSC-----EEECCCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EEC
T ss_pred eEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCc-----ceeeEeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEE
Confidence 89999999987 58999999999999999987210 01166788899999999999998 888888766655 776
Q ss_pred CCCCCce----------------------------e---------EE-------------eeCCCCCcEEEEEEcCCCCc
Q 013827 368 LSNNQPS----------------------------C---------IA-------------SRNPKAGAVFSVAFSEDSPF 397 (436)
Q Consensus 368 ~~~~~~~----------------------------~---------~~-------------~~~~~~~~v~~~~~~~~~~~ 397 (436)
....... . .. ....|...|+++++.+....
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~ 358 (377)
T 3dwl_C 279 GNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPG 358 (377)
T ss_dssp CCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETT
T ss_pred eCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCC
Confidence 6521100 0 00 01128889999998765532
Q ss_pred ---EEEEEeCCCcEEEEeC
Q 013827 398 ---VLAIGGSKGKLEIWDT 413 (436)
Q Consensus 398 ---~l~s~~~dg~i~iwd~ 413 (436)
.|+|++.||.|+|||+
T Consensus 359 ~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 359 NITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEEEEEETTSEEEEECC
T ss_pred ceEEEEeecCCCcEEEecC
Confidence 4899999999999986
No 47
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-37 Score=293.78 Aligned_cols=311 Identities=11% Similarity=0.064 Sum_probs=222.5
Q ss_pred CccccccceeccCC---------ceEEEEEecCCc--------------ceeEEEEEecCCCCCCc----eeeecccccC
Q 013827 72 DSEDLEDMTINPND---------AVIVCARNEDDV--------------SHLEVYILEESDGGDPN----LYVHHHIIIP 124 (436)
Q Consensus 72 ~~~~v~~~~~sp~~---------~~l~~~~~~~~~--------------~~~~v~~~~~~~~~~~~----~~~~~~~~~~ 124 (436)
+.+.|.+|+|+|++ ++||+|..++.. ....|.+|+........ ...+|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~---- 207 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSF---- 207 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECC----
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecC----
Confidence 35789999999997 788887744210 01134444443332111 112222
Q ss_pred cCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCccccee
Q 013827 125 AFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL 204 (436)
Q Consensus 125 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 204 (436)
..+.+++|.+. ..+++++.+||+|+.||+|+|||+........... ........+.+|...|+
T Consensus 208 ~~V~~v~wsp~-~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~----------------~~~~p~~~l~~h~~~v~ 270 (524)
T 2j04_B 208 GEVWDLKWHEG-CHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK----------------MCEKPSLTLSLADSLIT 270 (524)
T ss_dssp CSEEEEEECSS-CCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE----------------CCCSCSEEECCTTTCEE
T ss_pred CcEEEEEECCC-CCCCCCCceEEEEecCCeEEEEEcCCCccccccce----------------eecCceEEEEcCCCCEE
Confidence 23456778321 11223478999999999999999976543210000 00122334668999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCC-eEEEEEcccCCCeEEE--EEcCCCCCEEEEEECCCcEEEEecCCCCCccc
Q 013827 205 GLAWNKEFRNILASASADKQVKIWDVAAG-KCNLTLEHHTDKVQAV--AWNHHSPQILLSGSFDRSVVMKDARISTHSGF 281 (436)
Q Consensus 205 ~~~~~~~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~~--~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 281 (436)
+++|+++ ..|++|+.||+|++||++++ .+...+.+|...|.++ .|+|++..+|++++.|++|++||+++.+....
T Consensus 271 sv~~s~~--~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~ 348 (524)
T 2j04_B 271 TFDFLSP--TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKT 348 (524)
T ss_dssp EEEESSS--SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCE
T ss_pred EEEecCC--CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccc
Confidence 9999986 38999999999999999876 3456688999999999 56776547899999999999999998776655
Q ss_pred eEeeeC--CeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeC
Q 013827 282 KWAVAA--DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 359 (436)
Q Consensus 282 ~~~~~~--~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 359 (436)
...+.. .+.+++|+|++ ..+++++.|++|++||+++. .....+.+|...|++++|+|++ .+|++|+.
T Consensus 349 ~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~---------~~~~~l~gH~~~V~sva~Sp~g-~~l~Sgs~ 417 (524)
T 2j04_B 349 TVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAA---------FAVHPLVSRETTITAIGVSRLH-PMVLAGSA 417 (524)
T ss_dssp EEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCT---------TCCEEEEECSSCEEEEECCSSC-CBCEEEET
T ss_pred cccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECccc---------ccceeeecCCCceEEEEeCCCC-CeEEEEEC
Confidence 555543 58899999987 57999999999999999987 5567788999999999999998 79999999
Q ss_pred CCcEEEEECCCCC------------------------------------------ceeEEeeCCCCCcEEEEEEcCCCC-
Q 013827 360 DKMVKLWDLSNNQ------------------------------------------PSCIASRNPKAGAVFSVAFSEDSP- 396 (436)
Q Consensus 360 d~~i~iwd~~~~~------------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~- 396 (436)
|++|++||+.... ......+.+|...|.+++|+|++.
T Consensus 418 Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~ 497 (524)
T 2j04_B 418 DGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAG 497 (524)
T ss_dssp TTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTT
T ss_pred CCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCc
Confidence 9999999853210 001223445778899999999963
Q ss_pred -cEEEEEeCCCcEEEEeCCCC
Q 013827 397 -FVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 397 -~~l~s~~~dg~i~iwd~~~~ 416 (436)
.++|+|+.||.|+||++.-.
T Consensus 498 ~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 498 GKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp TTEEEEECTTSEEEEEECSCC
T ss_pred cHHHHhhccCceEEEEEcccc
Confidence 26999999999999998754
No 48
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.6e-36 Score=278.94 Aligned_cols=270 Identities=19% Similarity=0.302 Sum_probs=210.5
Q ss_pred cCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCccccee
Q 013827 125 AFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL 204 (436)
Q Consensus 125 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 204 (436)
..+.|++| +|+|++||+|+ ++.++||++.+++............. ............+...|.
T Consensus 65 ~~V~~v~f-------spdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~v~ 127 (393)
T 1erj_A 65 SVVCCVKF-------SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK---------DPENLNTSSSPSSDLYIR 127 (393)
T ss_dssp SCCCEEEE-------CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------------------------CCCCBEE
T ss_pred CEEEEEEE-------CCCCCEEEEEc-CCcEEEEEecCCCEEEEecCcccccc---------ccccccccccCCCceeEE
Confidence 34467777 99999999987 78999999987765432211000000 000000011113445699
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEe
Q 013827 205 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA 284 (436)
Q Consensus 205 ~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 284 (436)
+++|+|+| .+|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||+++..... ...
T Consensus 128 ~v~~s~dg-~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~-~~~ 204 (393)
T 1erj_A 128 SVCFSPDG-KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSL-TLS 204 (393)
T ss_dssp EEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE-EEE
T ss_pred EEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEE-EEE
Confidence 99999997 599999999999999999999999999999999999999999 899999999999999999876544 345
Q ss_pred eeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE-------eccCCCeEEEEecCCCCCEEEEE
Q 013827 285 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-------HAHDKAVCTISYNPLVPNLLATG 357 (436)
Q Consensus 285 ~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~p~~~~~l~~~ 357 (436)
+...+.+++|+|..+.++++|+.|+.|++||++++ ..+..+ .+|...|.+++|+|++ .+|++|
T Consensus 205 ~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~---------~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~ 274 (393)
T 1erj_A 205 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG---------FLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSG 274 (393)
T ss_dssp CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC---------CEEEEEC------CCCSSCEEEEEECTTS-SEEEEE
T ss_pred cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC---------cEEEeecccccCCCCCCCCEEEEEECCCC-CEEEEE
Confidence 67789999999955579999999999999999876 333333 5789999999999998 899999
Q ss_pred eCCCcEEEEECCCCCc----------eeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccC
Q 013827 358 STDKMVKLWDLSNNQP----------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 425 (436)
Q Consensus 358 ~~d~~i~iwd~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (436)
+.|+.|++||++.... .+...+.+|...|.+++|+|++. +|++|+.|+.|++||+.+++.+...-.+
T Consensus 275 s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~iwd~~~~~~~~~l~~h 351 (393)
T 1erj_A 275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGNPLLMLQGH 351 (393)
T ss_dssp ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred eCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC-EEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence 9999999999976421 23456678999999999999999 4899999999999999999877654433
No 49
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.3e-36 Score=279.32 Aligned_cols=305 Identities=11% Similarity=0.106 Sum_probs=214.5
Q ss_pred cccccceeccCCceEEEEEecCCcc--eeEEEEEecCCCCCCc---eeeecccccC---cCcceeecccCCCCCCCCCcE
Q 013827 74 EDLEDMTINPNDAVIVCARNEDDVS--HLEVYILEESDGGDPN---LYVHHHIIIP---AFPLCMAWLDCPLKDREKGNF 145 (436)
Q Consensus 74 ~~v~~~~~sp~~~~l~~~~~~~~~~--~~~v~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~ 145 (436)
-+|++++|+||+++|++|+.+.... .-+|.+|+........ +...+...+. ..+.|+. ++++.
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~---------~~~~~ 85 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAID---------ASKGI 85 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEE---------EETTE
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEE---------eCCCE
Confidence 3699999999999999987543210 1135555443332111 1111111111 1234443 35555
Q ss_pred EEEe-----------eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCc
Q 013827 146 MAVG-----------SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN 214 (436)
Q Consensus 146 l~~g-----------~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 214 (436)
+++| +.|+.+++|++........... .........+...+.+++|+|||.
T Consensus 86 ~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~v~fSpDg~- 146 (365)
T 4h5i_A 86 ILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLT------------------SVDFDASTNADDYTKLVYISREGT- 146 (365)
T ss_dssp EEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEE------------------EECSSCCCCTTCCEEEEEECTTSS-
T ss_pred EEEEECCCccEEEEecCCCcEEEEEecCCCceEEEee------------------eeceeecCCcccCEEEEEEcCCCC-
Confidence 6554 4578899998865433211100 001111234566789999999985
Q ss_pred EEE--EEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc--ceEeeeCCee
Q 013827 215 ILA--SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVE 290 (436)
Q Consensus 215 ~l~--s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~i~ 290 (436)
+++ +++.|++|+|||+++++.+..+. |...|.+++|+|++ .++++++. +.+.+|+..++.... ....+...+.
T Consensus 147 ~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg-~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (365)
T 4h5i_A 147 VAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDG-KVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLS 223 (365)
T ss_dssp CEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTS-SEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEE
T ss_pred EEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCC-ceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEE
Confidence 554 55579999999999999988886 77889999999999 88888875 456677766655442 2234566799
Q ss_pred EEEeCCCCCcEEEEEeCCC----cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEE
Q 013827 291 SLAWDPHAEHSFVVSLEDG----TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 366 (436)
Q Consensus 291 ~~~~~~~~~~~~~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iw 366 (436)
+++|+|++ ..+++++.|+ .+++|++..... .......+..|...|++++|+|++ .+||+|+.|++|+||
T Consensus 224 ~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iw 296 (365)
T 4h5i_A 224 KINFIADD-TVLIAASLKKGKGIVLTKISIKSGNT-----SVLRSKQVTNRFKGITSMDVDMKG-ELAVLASNDNSIALV 296 (365)
T ss_dssp EEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEE-----EEEEEEEEESSCSCEEEEEECTTS-CEEEEEETTSCEEEE
T ss_pred EEEEcCCC-CEEEEEecCCcceeEEeeccccccee-----cceeeeeecCCCCCeEeEEECCCC-CceEEEcCCCEEEEE
Confidence 99999988 5777777766 688899876521 011235677899999999999999 999999999999999
Q ss_pred ECCCCCceeEEe-eCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccc
Q 013827 367 DLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 419 (436)
Q Consensus 367 d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (436)
|+++++ .+.. ..+|..+|++++|+|||+ +||+|+.|++|+|||+......
T Consensus 297 d~~~~~--~~~~~~~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip~~~~~ 347 (365)
T 4h5i_A 297 KLKDLS--MSKIFKQAHSFAITEVTISPDST-YVASVSAANTIHIIKLPLNYAN 347 (365)
T ss_dssp ETTTTE--EEEEETTSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECCTTTTC
T ss_pred ECCCCc--EEEEecCcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcCCCCcC
Confidence 999887 4444 478999999999999999 5999999999999999755443
No 50
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.7e-35 Score=277.69 Aligned_cols=287 Identities=21% Similarity=0.362 Sum_probs=230.9
Q ss_pred cccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCC
Q 013827 74 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP 153 (436)
Q Consensus 74 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 153 (436)
-....|+||++ ++||+|. ++ .|++|+..++....++..+. ....+.|++| +|+|++||+|+.||
T Consensus 106 ~y~~~l~wS~~-n~lAvgl-d~-----tV~lWd~~tg~~~~~~~~~~--~~~~V~sv~f-------spdg~~lasgs~Dg 169 (420)
T 4gga_A 106 YYLNLVDWSSG-NVLAVAL-DN-----SVYLWSASSGDILQLLQMEQ--PGEYISSVAW-------IKEGNYLAVGTSSA 169 (420)
T ss_dssp TTCBCEEECTT-SEEEEEE-TT-----EEEEEETTTCCEEEEEECCS--TTCCEEEEEE-------CTTSSEEEEEETTS
T ss_pred ccceeEEECCC-CEEEEEe-CC-----EEEEEECCCCCEEEEEEecC--CCCcEEEEEE-------CCCCCEEEEEECCC
Confidence 34667999986 4777775 55 88899888764333332221 2234578888 89999999999999
Q ss_pred cEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 154 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG 233 (436)
Q Consensus 154 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~ 233 (436)
+|+|||+.+++.+. .+.+|...+.++++++ .+|++|+.|+.+++||....
T Consensus 170 ~v~iWd~~~~~~~~---------------------------~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~ 219 (420)
T 4gga_A 170 EVQLWDVQQQKRLR---------------------------NMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVA 219 (420)
T ss_dssp CEEEEETTTTEEEE---------------------------EECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSS
T ss_pred eEEEEEcCCCcEEE---------------------------EEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeeccc
Confidence 99999998654433 2558999999998864 48999999999999998864
Q ss_pred -eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc----cceEeeeCCeeEEEeCCCCCcEEEEE--e
Q 013827 234 -KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS----GFKWAVAADVESLAWDPHAEHSFVVS--L 306 (436)
Q Consensus 234 -~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~--~ 306 (436)
..+..+.+|...+..+.|+|++ .++++++.|+.+++||....... .....+...|.+++|+|.+..+++++ +
T Consensus 220 ~~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs 298 (420)
T 4gga_A 220 EHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 298 (420)
T ss_dssp SCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECT
T ss_pred ceeeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeec
Confidence 4567788999999999999999 89999999999999999876543 23445778899999999988888765 4
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEe--CCCcEEEEECCCCCceeEEeeCCCCC
Q 013827 307 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS--TDKMVKLWDLSNNQPSCIASRNPKAG 384 (436)
Q Consensus 307 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~ 384 (436)
.|+.|++||++++ .....+. +...+.++.|+|++ ..+++++ .|+.|++||+.+++ .+..+.+|.+
T Consensus 299 ~D~~I~iwd~~t~---------~~~~~~~-~~~~v~~~~~~~~~-~~lv~~sg~~d~~I~iwd~~~~~--~v~~l~gH~~ 365 (420)
T 4gga_A 299 SDRHIRIWNVCSG---------ACLSAVD-AHSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTMA--KVAELKGHTS 365 (420)
T ss_dssp TTCEEEEEETTTT---------EEEEEEE-CSSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTCC--EEEEECCCSS
T ss_pred CCCEEEEEeCCcc---------ccceeec-cccceeeeeecCCC-CeEEEEEecCCCEEEEEECCCCc--EEEEEcCCCC
Confidence 7999999999987 5455555 44678899999998 6666554 69999999999987 5777889999
Q ss_pred cEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 385 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 385 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
.|++++|+|+|++ |++|+.|++|+|||+......++
T Consensus 366 ~V~~l~~spdg~~-l~S~s~D~tvriWdv~~~~~~~~ 401 (420)
T 4gga_A 366 RVLSLTMSPDGAT-VASAAADETLRLWRCFELDPARR 401 (420)
T ss_dssp CEEEEEECTTSSC-EEEEETTTEEEEECCSCSSCC--
T ss_pred CEEEEEEcCCCCE-EEEEecCCeEEEEECCCCCccch
Confidence 9999999999995 99999999999999987665544
No 51
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.6e-36 Score=301.25 Aligned_cols=288 Identities=18% Similarity=0.306 Sum_probs=224.6
Q ss_pred CCCccccccceeccCC-ceEEEEEecCCcceeEEEEEecCCCCCC-----ceeeecccccCcCcceeecccCCCCCCCCC
Q 013827 70 DEDSEDLEDMTINPND-AVIVCARNEDDVSHLEVYILEESDGGDP-----NLYVHHHIIIPAFPLCMAWLDCPLKDREKG 143 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~-~~l~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 143 (436)
..|.+.|.+++|+|++ .+|++|+.|+ .|.+|+....... ..+..|. ..+.|+.| +|++
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~-----~i~~W~~~~~~~~~~~~~~~~~~h~----~~v~~v~~-------s~~g 442 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIVSASRDK-----SIILWKLTKDDKAYGVAQRRLTGHS----HFVEDVVL-------SSDG 442 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEEEEETTS-----EEEEEECCCSTTCSCEEEEEEECCS----SCEEEEEE-------CTTS
T ss_pred ccCCceeEEEEecCCCCCEEEEEeCCC-----cEEEEEccCCCcccccccceecCCC----CcEEEEEE-------CCCC
Confidence 3799999999999976 6888888886 6666765543211 1122332 33456766 8999
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCC
Q 013827 144 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK 223 (436)
Q Consensus 144 ~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 223 (436)
++|++|+.||+|+|||+.++.... .+.+|...|.+++|+|++ .+|++|+.|+
T Consensus 443 ~~l~sgs~Dg~v~vwd~~~~~~~~---------------------------~~~~h~~~v~~~~~s~~~-~~l~s~s~D~ 494 (694)
T 3dm0_A 443 QFALSGSWDGELRLWDLAAGVSTR---------------------------RFVGHTKDVLSVAFSLDN-RQIVSASRDR 494 (694)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEE---------------------------EEECCSSCEEEEEECTTS-SCEEEEETTS
T ss_pred CEEEEEeCCCcEEEEECCCCccee---------------------------EEeCCCCCEEEEEEeCCC-CEEEEEeCCC
Confidence 999999999999999997644332 255899999999999996 5899999999
Q ss_pred cEEEEeCCCCeEEEEE---cccCCCeEEEEEcCCCC-CEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCC
Q 013827 224 QVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSP-QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 299 (436)
Q Consensus 224 ~v~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 299 (436)
+|++||+......... .+|...|.+++|+|++. ..+++++.|++|++||+++.........|...|.+++|+|++
T Consensus 495 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg- 573 (694)
T 3dm0_A 495 TIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG- 573 (694)
T ss_dssp CEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-
T ss_pred EEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCC-
Confidence 9999998755433332 46888999999999862 589999999999999999888777677899999999999987
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEee
Q 013827 300 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 379 (436)
Q Consensus 300 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 379 (436)
.++++++.||.|++||++++ ..+..+. +...+.+++|+|++ .+|++++ ++.|++||+++++.......
T Consensus 574 ~~l~sg~~Dg~i~iwd~~~~---------~~~~~~~-~~~~v~~~~~sp~~-~~l~~~~-~~~i~iwd~~~~~~~~~~~~ 641 (694)
T 3dm0_A 574 SLCASGGKDGVVLLWDLAEG---------KKLYSLE-ANSVIHALCFSPNR-YWLCAAT-EHGIKIWDLESKSIVEDLKV 641 (694)
T ss_dssp SEEEEEETTSBCEEEETTTT---------EEEECCB-CSSCEEEEEECSSS-SEEEEEE-TTEEEEEETTTTEEEEEECC
T ss_pred CEEEEEeCCCeEEEEECCCC---------ceEEEec-CCCcEEEEEEcCCC-cEEEEEc-CCCEEEEECCCCCChhhhcc
Confidence 68999999999999999987 3344443 45679999999987 7777665 56699999998763222211
Q ss_pred C-----------------CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 380 N-----------------PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 380 ~-----------------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
. .+...+++++|+|+|+ +|++|+.||.|+||++..
T Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~-~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 642 DLKAEAEKADNSGPAATKRKVIYCTSLNWSADGS-TLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp CCC----------------CCCCEEEEEECTTSS-EEEEEETTSEEEEEEC--
T ss_pred ccccccccccccccccCCceeEEeeeEEEcCCCC-EEEEEcCCCeEEEEeccC
Confidence 0 1112378999999999 599999999999999853
No 52
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5.7e-37 Score=289.01 Aligned_cols=291 Identities=14% Similarity=0.185 Sum_probs=214.5
Q ss_pred CCccccccceeccC-CceEEEEEecCCcceeEEEEEecCCCCCCcee--eecccccCcCcceeecccCCCCCCC-CCcEE
Q 013827 71 EDSEDLEDMTINPN-DAVIVCARNEDDVSHLEVYILEESDGGDPNLY--VHHHIIIPAFPLCMAWLDCPLKDRE-KGNFM 146 (436)
Q Consensus 71 ~~~~~v~~~~~sp~-~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l 146 (436)
.|+..|++++|+|. +++||+|+.++ .|.+|+.......... ..|. ..+.|++| +| ++++|
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~~gH~----~~V~~l~f-------~p~~~~~l 180 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKGIGAG----GSITGLKF-------NPLNTNQF 180 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTS-----CEEEECSSCCSCCEEECCCSSS----CCCCEEEE-------CSSCTTEE
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCC-----EEEEEECCCCCceeEEEccCCC----CCEEEEEE-------eCCCCCEE
Confidence 46778999999995 56898998887 6777776554322222 2233 33467877 76 78999
Q ss_pred EEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEE
Q 013827 147 AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVK 226 (436)
Q Consensus 147 ~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 226 (436)
++|+.||+|+|||+.+.... .......+...+.+++|+|++ .+|++|+.||.|+
T Consensus 181 ~s~s~D~~v~iwd~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~ 234 (435)
T 4e54_B 181 YASSMEGTTRLQDFKGNILR-------------------------VFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVI 234 (435)
T ss_dssp EEECSSSCEEEEETTSCEEE-------------------------EEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEE
T ss_pred EEEeCCCEEEEeeccCCcee-------------------------EEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEe
Confidence 99999999999999743211 111122355678899999996 6999999999999
Q ss_pred EEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc---ceEeeeCCeeEEEeCCCCCcEEE
Q 013827 227 IWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG---FKWAVAADVESLAWDPHAEHSFV 303 (436)
Q Consensus 227 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~ 303 (436)
+||++. +.+..+.+|...|.+++|+|++..++++++.|+.|++||+++..... ....|...|++++|+|++ .+|+
T Consensus 235 ~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~ 312 (435)
T 4e54_B 235 LLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG-ARLL 312 (435)
T ss_dssp EEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS-SEEE
T ss_pred eeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCC-CeeE
Confidence 999864 55677889999999999999987789999999999999998766543 234688899999999987 6899
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCC------CeEEEEecCCCCCEEEEEe------------CCCcEEE
Q 013827 304 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK------AVCTISYNPLVPNLLATGS------------TDKMVKL 365 (436)
Q Consensus 304 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~~p~~~~~l~~~~------------~d~~i~i 365 (436)
+++.||.|++||+++. .....+..|.. .+....|+|++ .++++++ .++.|++
T Consensus 313 s~~~D~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~i~i 382 (435)
T 4e54_B 313 TTDQKSEIRVYSASQW---------DCPLGLIPHPHRHFQHLTPIKAAWHPRY-NLIVVGRYPDPNFKSCTPYELRTIDV 382 (435)
T ss_dssp EEESSSCEEEEESSSS---------SSEEEECCCCCCCCSSSCCCBCEECSSS-SCEEEECCCCTTSCCSSTTCCCCEEE
T ss_pred EEcCCCEEEEEECCCC---------ccceEEecccccccccceeEEEEEcCCC-CEEEEEEcCCCCeEEEEecCCCEEEE
Confidence 9999999999999987 33334433321 12334566655 4444443 3467999
Q ss_pred EECCCCCceeEEeeCCCCCcEEEE-EEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 366 WDLSNNQPSCIASRNPKAGAVFSV-AFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 366 wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
||..+++.... ...+|...|.++ +|+|+|.+ |++|+ |+.|+||++++++.
T Consensus 383 wd~~~g~~~~~-l~~~~~~~v~s~~~fspdg~~-lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 383 FDGNSGKMMCQ-LYDPESSGISSLNEFNPMGDT-LASAM-GYHILIWSQQEART 433 (435)
T ss_dssp ECSSSCCEEEE-ECCSSCCCCCCEEEECTTSSC-EEEEC-SSEEEECCCC----
T ss_pred EECCCCcEEEE-EeCCCCCcEEEEEEECCCCCE-EEEEc-CCcEEEEECCcCee
Confidence 99999874222 234677788887 69999994 77665 88999999998765
No 53
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.1e-35 Score=279.66 Aligned_cols=262 Identities=19% Similarity=0.342 Sum_probs=216.2
Q ss_pred CcCcceeecccCCCCCCCC-CcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccc
Q 013827 124 PAFPLCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 202 (436)
Q Consensus 124 ~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 202 (436)
...+.+++| +|+ +.+||+|+.||.|++|++........ ..........+.+|...
T Consensus 128 ~~~v~~l~~-------~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----------------~~~~~~~~~~~~~h~~~ 183 (430)
T 2xyi_A 128 EGEVNRARY-------MPQNACVIATKTPSSDVLVFDYTKHPSKPE-----------------PSGECQPDLRLRGHQKE 183 (430)
T ss_dssp SSCCSEEEE-------ETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------------TTCCCCCSEEEECCSSC
T ss_pred CCcEEEEEE-------CCCCCcEEEEECCCCcEEEEECCCcccccC-----------------ccccCCCcEEecCCCCC
Confidence 344567777 676 78999999999999999975211110 00112344456689999
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeE-------EEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC
Q 013827 203 VLGLAWNKEFRNILASASADKQVKIWDVAAGKC-------NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 275 (436)
Q Consensus 203 v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 275 (436)
|.+++|+|++..+|++|+.||.|++||+.++.. ...+.+|...|.+++|+|++..+|++++.|+.|++||+++
T Consensus 184 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~ 263 (430)
T 2xyi_A 184 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRN 263 (430)
T ss_dssp CCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 999999999755999999999999999987322 4567789999999999996658999999999999999998
Q ss_pred CC---CccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCC
Q 013827 276 ST---HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 352 (436)
Q Consensus 276 ~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 352 (436)
.. .......+...+++++|+|++..++++|+.||.|++||++.. ..++..+..|...|.+++|+|++..
T Consensus 264 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~--------~~~~~~~~~h~~~v~~i~~sp~~~~ 335 (430)
T 2xyi_A 264 NNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL--------KLKLHSFESHKDEIFQVQWSPHNET 335 (430)
T ss_dssp SCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT--------TSCSEEEECCSSCEEEEEECSSCTT
T ss_pred CCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC--------CCCeEEeecCCCCEEEEEECCCCCC
Confidence 73 444455788899999999998778999999999999999985 2567888899999999999999877
Q ss_pred EEEEEeCCCcEEEEECCCCC------------ceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 353 LLATGSTDKMVKLWDLSNNQ------------PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 353 ~l~~~~~d~~i~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
+|++++.|+.|++||+.... +..+..+.+|...|++++|+|+++++|++++.||.|+||++....
T Consensus 336 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 336 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp EEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred EEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 89999999999999998722 235677788999999999999999779999999999999997643
No 54
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5e-36 Score=279.95 Aligned_cols=302 Identities=12% Similarity=0.203 Sum_probs=227.0
Q ss_pred CCccccccceecc-CCceEEEEEecCCcceeEEEEEecCCCCCCceeeecc---------cccCcCcceeecccCCCCCC
Q 013827 71 EDSEDLEDMTINP-NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHH---------IIIPAFPLCMAWLDCPLKDR 140 (436)
Q Consensus 71 ~~~~~v~~~~~sp-~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~s 140 (436)
.|.+.|.+++|+| ++++|++++.++ .|.+|+.........+.... ......+.+++| +
T Consensus 41 ~h~~~v~~~~~s~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~ 108 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGRYMLSGGSDG-----VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQW-------Y 108 (408)
T ss_dssp CCSSCEEEEEECTTTCCEEEEEETTS-----CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEE-------C
T ss_pred ccCCcEEEEEEecCCCCEEEEEcCCC-----eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEE-------c
Confidence 5889999999999 999999999887 66677666553333332110 012234467777 6
Q ss_pred C-CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCC--cEEE
Q 013827 141 E-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR--NILA 217 (436)
Q Consensus 141 ~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~ 217 (436)
| ++++|++++.||.|++||+.+++..... .+...+.++.|+|.+. .+++
T Consensus 109 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~ 160 (408)
T 4a11_B 109 PHDTGMFTSSSFDKTLKVWDTNTLQTADVF----------------------------NFEETVYSHHMSPVSTKHCLVA 160 (408)
T ss_dssp TTCTTCEEEEETTSEEEEEETTTTEEEEEE----------------------------ECSSCEEEEEECSSCSSCCEEE
T ss_pred cCCCcEEEEEeCCCeEEEeeCCCCccceec----------------------------cCCCceeeeEeecCCCCCcEEE
Confidence 7 7889999999999999999865443321 3677899999998632 3999
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccc----------------
Q 013827 218 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF---------------- 281 (436)
Q Consensus 218 s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~---------------- 281 (436)
+++.|+.|++||+.+++.+..+..|...|.+++|+|++..++++++.||.|++||++.......
T Consensus 161 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (408)
T 4a11_B 161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240 (408)
T ss_dssp EEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTS
T ss_pred EEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccc
Confidence 9999999999999999999999999999999999999955799999999999999987652221
Q ss_pred eEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCC
Q 013827 282 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK 361 (436)
Q Consensus 282 ~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~ 361 (436)
...+...+.+++|+|++ .++++++.||.|++||+++......... .........+......... ..+++++.++
T Consensus 241 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 314 (408)
T 4a11_B 241 NTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENTLVNYG----KVCNNSKKGLKFTVSCGCS-SEFVFVPYGS 314 (408)
T ss_dssp SCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCBCCCCCC----CCCCCCSSCCCCEECCSSS-SCEEEEEETT
T ss_pred cccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCCCccceeccc----cccccccccceeEEecCCC-ceEEEEecCC
Confidence 13577889999999987 6899999999999999998743211000 0001111122222222223 5677778899
Q ss_pred cEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 362 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 362 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
.|++||+.+++ .+..+.+|.+.|++++|+|+++ +|++++.||.|++||+.+++.+..
T Consensus 315 ~i~v~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 315 TIAVYTVYSGE--QITMLKGHYKTVDCCVFQSNFQ-ELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp EEEEEETTTCC--EEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEEECC------
T ss_pred EEEEEECcCCc--ceeeeccCCCeEEEEEEcCCCC-EEEEECCCCeEEEEeCCCCCccCC
Confidence 99999999987 5667788999999999999999 599999999999999999887754
No 55
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-37 Score=311.14 Aligned_cols=342 Identities=14% Similarity=0.147 Sum_probs=238.3
Q ss_pred HHhhcccceeeec-----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEE
Q 013827 18 RLYHSCFRCHKIS-----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCAR 92 (436)
Q Consensus 18 ~~~~~~~~~~~~~-----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 92 (436)
..+.++.|+|+.+ +.|++++||+....+.. .. ..|...|.+++|+| +++|++++
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~-----------------~~---~~~~~~V~~l~fsp-g~~L~S~s 76 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV-----------------IK---LEDRSAIKEMRFVK-GIYLVVIN 76 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE-----------------EE---CSSCCCEEEEEEET-TTEEEEEE
T ss_pred CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE-----------------EE---cCCCCCEEEEEEcC-CCEEEEEE
Confidence 3467888999877 88999999987654431 01 13466899999999 88899998
Q ss_pred ecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeee
Q 013827 93 NEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVIL 172 (436)
Q Consensus 93 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~ 172 (436)
.++ .|.+|+...++....+. .+..+.+++| +|++++|++|+.||.|++||+.+.+.. .....
T Consensus 77 ~D~-----~v~lWd~~~~~~~~~~~-----~~~~V~~v~~-------sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~ 138 (902)
T 2oaj_A 77 AKD-----TVYVLSLYSQKVLTTVF-----VPGKITSIDT-------DASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLD 138 (902)
T ss_dssp TTC-----EEEEEETTTCSEEEEEE-----CSSCEEEEEC-------CTTCSEEEEEETTSCEEEEETTTTEEE-EEEEC
T ss_pred CcC-----eEEEEECCCCcEEEEEc-----CCCCEEEEEE-------CCCCCEEEEEcCCCcEEEEECCCCccc-cceec
Confidence 886 78888877653222222 2234566666 899999999999999999999865432 10000
Q ss_pred cccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEccc----------
Q 013827 173 GGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH---------- 242 (436)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~---------- 242 (436)
........+.+|...|++++|+|++...|++|+.||.| +||+++++.+..+..|
T Consensus 139 ---------------~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~ 202 (902)
T 2oaj_A 139 ---------------NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDF 202 (902)
T ss_dssp ---------------CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTT
T ss_pred ---------------cccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccc
Confidence 00000023468999999999999755689999999999 9999999988888765
Q ss_pred --------CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccc--e-----E-----------eeeCCeeEEEeC-
Q 013827 243 --------TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF--K-----W-----------AVAADVESLAWD- 295 (436)
Q Consensus 243 --------~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~-----~-----------~~~~~i~~~~~~- 295 (436)
...|.+++|+|++ .+|++++.|+.|++||+++++.... . . .+...|.+++|+
T Consensus 203 ~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~ 281 (902)
T 2oaj_A 203 SEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMC 281 (902)
T ss_dssp CCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEE
T ss_pred ccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEe
Confidence 5789999999999 8999999999999999988664321 0 0 123468888884
Q ss_pred ---CCCCcEEEEEeCC-----CcEEEEe----------------------------------------------------
Q 013827 296 ---PHAEHSFVVSLED-----GTIKGFD---------------------------------------------------- 315 (436)
Q Consensus 296 ---~~~~~~~~~~~~d-----g~i~i~d---------------------------------------------------- 315 (436)
|++..++++|+.+ ..+.+|+
T Consensus 282 ~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~ 361 (902)
T 2oaj_A 282 ENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGC 361 (902)
T ss_dssp CSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHT
T ss_pred cCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCC
Confidence 3333456666443 2455555
Q ss_pred -------------------CCCCCCCCCC---C-----C------------------------CcccEEEeccCCCeEEE
Q 013827 316 -------------------IRTAKSDPDS---T-----S------------------------QQSSFTLHAHDKAVCTI 344 (436)
Q Consensus 316 -------------------~~~~~~~~~~---~-----~------------------------~~~~~~~~~~~~~v~~~ 344 (436)
+.++...... . . ......+.+|...+..+
T Consensus 362 ~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv 441 (902)
T 2oaj_A 362 HNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQK 441 (902)
T ss_dssp BSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCC
T ss_pred CCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcc
Confidence 2211000000 0 0 00000122333444455
Q ss_pred EecCCCCCEEEEEeCCCcEEEEECCCCCce--eEEe--e-----CCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 345 SYNPLVPNLLATGSTDKMVKLWDLSNNQPS--CIAS--R-----NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 345 ~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~--~-----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
+|+|++ .+|++|+.|++|++||+.++... .... + .+|...|++++|+|+++ +||+|+.||+|+|||+.+
T Consensus 442 ~~spdg-~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~-~LAsgs~DgtV~lwd~~~ 519 (902)
T 2oaj_A 442 LPAEYG-TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETL-ELAVSIETGDVVLFKYEV 519 (902)
T ss_dssp CCCSEE-EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTT-EEEEEETTSCEEEEEEEE
T ss_pred cccccC-cEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCC-eEEEEecCcEEEEEEecC
Confidence 667887 89999999999999999886531 1111 1 17888999999999999 599999999999999987
Q ss_pred Cc
Q 013827 416 DA 417 (436)
Q Consensus 416 ~~ 417 (436)
++
T Consensus 520 ~~ 521 (902)
T 2oaj_A 520 NQ 521 (902)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 56
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.1e-35 Score=268.32 Aligned_cols=249 Identities=19% Similarity=0.256 Sum_probs=207.6
Q ss_pred cceeecccCCCCCCCC-CcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeE
Q 013827 127 PLCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG 205 (436)
Q Consensus 127 ~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 205 (436)
+.+++| +|+ +++|++|+.|++|++|++...... .......+.+|...|.+
T Consensus 20 V~~l~~-------~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------------~~~~~~~~~~h~~~v~~ 70 (319)
T 3frx_A 20 VTSLAT-------SAGQPNLLLSASRDKTLISWKLTGDDQK----------------------FGVPVRSFKGHSHIVQD 70 (319)
T ss_dssp EEEEEE-------CSSCTTEEEEEETTSEEEEEEEEEETTE----------------------EEEEEEEEECCSSCEEE
T ss_pred EEEEEc-------cCCCccEEEEecCCccEEEecCCCCCcc----------------------ccccceEEeCCcccEEE
Confidence 356666 665 589999999999999998643221 11233446789999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEee
Q 013827 206 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV 285 (436)
Q Consensus 206 ~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 285 (436)
++|+|++ .+|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++ .++++++.|++|++||++.. .......|
T Consensus 71 ~~~s~dg-~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~-~~~~~~~h 147 (319)
T 3frx_A 71 CTLTADG-AYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQ-CLATLLGH 147 (319)
T ss_dssp EEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSC-EEEEECCC
T ss_pred EEECCCC-CEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-eEEEEecc
Confidence 9999997 599999999999999999999999999999999999999999 89999999999999999743 34445678
Q ss_pred eCCeeEEEeCCCC-----CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCC
Q 013827 286 AADVESLAWDPHA-----EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD 360 (436)
Q Consensus 286 ~~~i~~~~~~~~~-----~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 360 (436)
...+.++.|.|.. ...+++++.|+.|++||+++. .....+.+|...|.+++|+|++ .+|++++.|
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---------~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~d 217 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF---------QIEADFIGHNSNINTLTASPDG-TLIASAGKD 217 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT---------EEEEEECCCCSCEEEEEECTTS-SEEEEEETT
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc---------hhheeecCCCCcEEEEEEcCCC-CEEEEEeCC
Confidence 8899999999853 248999999999999999876 5677888999999999999998 899999999
Q ss_pred CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 361 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 361 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
+.|++||+.+.+. +..+.. ...|.+++|+|++. +|++++. +.+++|++..+..+...
T Consensus 218 g~i~iwd~~~~~~--~~~~~~-~~~v~~~~~sp~~~-~la~~~~-~~i~v~~~~~~~~~~~~ 274 (319)
T 3frx_A 218 GEIMLWNLAAKKA--MYTLSA-QDEVFSLAFSPNRY-WLAAATA-TGIKVFSLDPQYLVDDL 274 (319)
T ss_dssp CEEEEEETTTTEE--EEEEEC-CSCEEEEEECSSSS-EEEEEET-TEEEEEEETTEEEEEEE
T ss_pred CeEEEEECCCCcE--EEEecC-CCcEEEEEEcCCCC-EEEEEcC-CCcEEEEeCcCeeeecc
Confidence 9999999998873 444444 35899999999998 4776654 56999999887665443
No 57
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=8.5e-37 Score=278.18 Aligned_cols=299 Identities=16% Similarity=0.216 Sum_probs=224.7
Q ss_pred HHHHHHHhhcccceeeec------cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCc
Q 013827 13 LEEILRLYHSCFRCHKIS------NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDA 86 (436)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~------~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 86 (436)
|+.|...+.++.|+|+.+ +.|++++||++...+..... +. ....+|...|.+++|+|+++
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~------------~~--~~l~~h~~~V~~~~~s~dg~ 99 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI------------PQ--RALRGHSHFVSDVVISSDGQ 99 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE------------EE--EEECCCSSCEEEEEECTTSS
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce------------ee--EEEeCCCCCEEEEEECCCCC
Confidence 445666788889998743 88999999998754321100 11 11236788999999999999
Q ss_pred eEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCC
Q 013827 87 VIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEV 166 (436)
Q Consensus 87 ~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~ 166 (436)
+|++++.++ .|.+|+........... .......+..+ ++++++|++|+.|+.+++||+....
T Consensus 100 ~l~s~~~d~-----~i~~~~~~~~~~~~~~~----~~~~~~~~~~~-------~~~~~~l~s~s~d~~~~~~d~~~~~-- 161 (340)
T 4aow_A 100 FALSGSWDG-----TLRLWDLTTGTTTRRFV----GHTKDVLSVAF-------SSDNRQIVSGSRDKTIKLWNTLGVC-- 161 (340)
T ss_dssp EEEEEETTS-----EEEEEETTTTEEEEEEE----CCSSCEEEEEE-------CTTSSCEEEEETTSCEEEECTTSCE--
T ss_pred EEEEEcccc-----cceEEeecccceeeeec----CCCCceeEEEE-------eecCccceeecCCCeEEEEEeCCCc--
Confidence 999999887 77778776652111111 11222233444 7899999999999999999986422
Q ss_pred cceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCC-cEEEEEeCCCcEEEEeCCCCeEEEEEcccCCC
Q 013827 167 QPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR-NILASASADKQVKIWDVAAGKCNLTLEHHTDK 245 (436)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~ 245 (436)
.......+|...|..++|++++. .++++++.|+.|++||+.+++.+..+.+|...
T Consensus 162 ------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~ 217 (340)
T 4aow_A 162 ------------------------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 217 (340)
T ss_dssp ------------------------EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred ------------------------eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCc
Confidence 12223557999999999998753 47889999999999999999999999999999
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCC
Q 013827 246 VQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS 325 (436)
Q Consensus 246 v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~ 325 (436)
|++++|+|++ .+|++++.|+.|++||+++..... .......+.++.|+|++ .+++++.|+.|++||++........
T Consensus 218 v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~ 293 (340)
T 4aow_A 218 LNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKHLY-TLDGGDIINALCFSPNR--YWLCAATGPSIKIWDLEGKIIVDEL 293 (340)
T ss_dssp EEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEE-EEECSSCEEEEEECSSS--SEEEEEETTEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCC-CEEEEEeCCCeEEEEEeccCceee-eecCCceEEeeecCCCC--ceeeccCCCEEEEEECCCCeEEEec
Confidence 9999999999 899999999999999999877655 44556789999999965 4667778999999999876321111
Q ss_pred CCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 013827 326 TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 326 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
...........|...|++++|+|++ .+|++|+.||.|+|||++++.
T Consensus 294 ~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 294 KQEVISTSSKAEPPQCTSLAWSADG-QTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCC-------CCCCCEEEEEECTTS-SEEEEEETTSCEEEEEEEC--
T ss_pred cccceeeeccCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEeCCCcC
Confidence 1112223445788999999999998 899999999999999998875
No 58
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.4e-35 Score=265.49 Aligned_cols=249 Identities=25% Similarity=0.408 Sum_probs=210.4
Q ss_pred cceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEE
Q 013827 127 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 206 (436)
Q Consensus 127 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 206 (436)
+.+++| +|++++||+|+.||.|++|++.+++... .+.+|...|.++
T Consensus 26 v~~~~~-------s~~~~~l~s~~~dg~i~iw~~~~~~~~~---------------------------~~~~h~~~v~~~ 71 (312)
T 4ery_A 26 VSSVKF-------SPNGEWLASSSADKLIKIWGAYDGKFEK---------------------------TISGHKLGISDV 71 (312)
T ss_dssp EEEEEE-------CTTSSEEEEEETTSCEEEEETTTCCEEE---------------------------EECCCSSCEEEE
T ss_pred EEEEEE-------CCCCCEEEEeeCCCeEEEEeCCCcccch---------------------------hhccCCCceEEE
Confidence 456777 8999999999999999999987544322 255799999999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeee
Q 013827 207 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA 286 (436)
Q Consensus 207 ~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 286 (436)
+|+|++ .+|++++.|+.|++||+++++.+..+.+|...|.+++|+|++ .++++++.|+.|++||+++.+.......+.
T Consensus 72 ~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 149 (312)
T 4ery_A 72 AWSSDS-NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149 (312)
T ss_dssp EECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred EEcCCC-CEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecCCC
Confidence 999996 699999999999999999999999999999999999999999 899999999999999999888777666788
Q ss_pred CCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE-eccCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 013827 287 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKL 365 (436)
Q Consensus 287 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~i 365 (436)
..+.+++|+|++ .++++++.||.|++||+++. ..+..+ ..+...+..++|+|++ .+|++++.|+.|++
T Consensus 150 ~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i 218 (312)
T 4ery_A 150 DPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASG---------QCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKL 218 (312)
T ss_dssp SCEEEEEECTTS-SEEEEEETTSCEEEEETTTC---------CEEEEECCSSCCCEEEEEECTTS-SEEEEEETTTEEEE
T ss_pred CcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC---------ceeeEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEE
Confidence 899999999987 68999999999999999876 334444 4566789999999998 89999999999999
Q ss_pred EECCCCCceeEEeeCCCCCcEE--EEEEc-CCCCcEEEEEeCCCcEEEEeCCCCccccccccC
Q 013827 366 WDLSNNQPSCIASRNPKAGAVF--SVAFS-EDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 425 (436)
Q Consensus 366 wd~~~~~~~~~~~~~~~~~~v~--~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (436)
||+++++ .+..+.+|...+. ...++ +++. +|++|+.||.|++||+.+++.+.....+
T Consensus 219 wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h 278 (312)
T 4ery_A 219 WDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKLQGH 278 (312)
T ss_dssp EETTTTE--EEEEECSSCCSSSCCCEEEECSSSC-EEEECCTTSCEEEEETTTCCEEEEECCC
T ss_pred EECCCCc--EEEEEEecCCceEEEEEEEEeCCCc-EEEEECCCCEEEEEECCCchhhhhhhcc
Confidence 9999887 4555566654322 23344 5666 6999999999999999998887665443
No 59
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-36 Score=308.32 Aligned_cols=378 Identities=10% Similarity=0.044 Sum_probs=249.3
Q ss_pred Hhhcccceeeec-----cCCCCcceeeecceeeccccccceeccCCCCCCccc-CCCCCCccccccceeccCC-ceEEEE
Q 013827 19 LYHSCFRCHKIS-----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLK-DKDDEDSEDLEDMTINPND-AVIVCA 91 (436)
Q Consensus 19 ~~~~~~~~~~~~-----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~-~~l~~~ 91 (436)
.+.++.|+|+.+ +.|+++++|+++...+.. ..+ .. .... .....|.+.|.+++|+|++ ..+++|
T Consensus 100 ~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~----~~i--~~---~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g 170 (902)
T 2oaj_A 100 KITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSS----FKL--DN---LQKSSFFPAARLSPIVSIQWNPRDIGTVLIS 170 (902)
T ss_dssp CEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEE----EEE--CC---HHHHHTCSSSCCCCCCEEEEETTEEEEEEEE
T ss_pred CEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccc----cee--cc---ccccccccccCCCCeEEEEEccCCCCEEEEE
Confidence 356777887766 889999999998765420 000 00 0000 1124678899999999964 678888
Q ss_pred EecCCcceeEEEEEecCCCCCCceeeeccc--------------ccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEE
Q 013827 92 RNEDDVSHLEVYILEESDGGDPNLYVHHHI--------------IIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEI 157 (436)
Q Consensus 92 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~v 157 (436)
+.++ .| +|+....+....+..|.. .....+.+++| +|+|++||+|+.||+|++
T Consensus 171 ~~dg-----~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f-------spdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 171 YEYV-----TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY-------HPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp CSSC-----EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE-------CTTSSEEEEEETTCCEEE
T ss_pred eCCC-----cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE-------cCCCCEEEEEECCCeEEE
Confidence 7665 67 888776532222222200 00133566777 999999999999999999
Q ss_pred EeCCCCCCCcceeee---cc-------------cc------------hh-hhhhccc-CC--Cc-ccc------------
Q 013827 158 WDLDVIDEVQPHVIL---GG-------------ID------------EE-KKKKKSK-KG--KK-SSI------------ 192 (436)
Q Consensus 158 w~~~~~~~~~~~~~~---~~-------------~~------------~~-~~~~~~~-~~--~~-~~~------------ 192 (436)
||+.+++.+...... .. .. .. ......- .. .. ..+
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~ 317 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS 317 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence 999886653210000 00 00 00 0000000 00 00 000
Q ss_pred ----------------ccccc-CcccceeEEEecCC---------CCcEEEEEeCCCcEEEEeCCCCeEEEE-------E
Q 013827 193 ----------------KYKKG-SHTDSVLGLAWNKE---------FRNILASASADKQVKIWDVAAGKCNLT-------L 239 (436)
Q Consensus 193 ----------------~~~~~-~h~~~v~~~~~~~~---------~~~~l~s~~~dg~v~vwd~~~~~~~~~-------~ 239 (436)
...+. +|...|.++.+.++ +...+++++.||.|++||+.++..... +
T Consensus 318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l 397 (902)
T 2oaj_A 318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNL 397 (902)
T ss_dssp GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGG
T ss_pred ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcc
Confidence 00111 34566777777551 123788888999999999877643221 1
Q ss_pred ----------------------------------cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc--ceE
Q 013827 240 ----------------------------------EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--FKW 283 (436)
Q Consensus 240 ----------------------------------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~ 283 (436)
.+|...+.+++|+|++ .+|++|+.|++|++||+.++.... ...
T Consensus 398 ~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg-~~laSgs~DgtVrlWd~~~g~~~~~~~~~ 476 (902)
T 2oaj_A 398 SWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG-TAFITGHSNGSVRIYDASHGDIQDNASFE 476 (902)
T ss_dssp TTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE-EEEEEEETTSEEEEEESSCCTTTTTBCEE
T ss_pred cccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC-cEEEEecCCCcEEEEECCCccccCCceEE
Confidence 2333344445567888 899999999999999998874321 111
Q ss_pred ---------eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCC------------------------------
Q 013827 284 ---------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD------------------------------ 324 (436)
Q Consensus 284 ---------~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~------------------------------ 324 (436)
.|...|.+++|+|++ .++++|+.||+|++||+.+.+....
T Consensus 477 ~~l~~~~~~~h~~~V~svafspdg-~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (902)
T 2oaj_A 477 VNLSRTLNKAKELAVDKISFAAET-LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRD 555 (902)
T ss_dssp EEHHHHTTCSSSCCEEEEEEETTT-TEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGG
T ss_pred eechhhcCCCCCCceeEEEecCCC-CeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccc
Confidence 567789999999988 6899999999999999986531000
Q ss_pred ------CCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEE---eeC-CCCCcEEEEEEc--
Q 013827 325 ------STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA---SRN-PKAGAVFSVAFS-- 392 (436)
Q Consensus 325 ------~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~-~~~~~v~~~~~~-- 392 (436)
....+++..+.+|.+.|++++|+|+| +||+|+.|++|++||+++....... .+. +|.+.|++++|+
T Consensus 556 ~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG--~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~ 633 (902)
T 2oaj_A 556 RAPTGVRQGFMPSTAVHANKGKTSAINNSNIG--FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIM 633 (902)
T ss_dssp GCCTTCSEEEEEEEEECCCSCSEEEEEECBTS--EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEE
T ss_pred cCCCCCCCccceeEEEEcCCCcEEEEEecCCc--EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEE
Confidence 00012356778899999999999998 9999999999999999876532111 232 788999999999
Q ss_pred ---CCC---CcEEEEEeCCCcEEEEeC---CCCccccccc
Q 013827 393 ---EDS---PFVLAIGGSKGKLEIWDT---LSDAGISNRF 423 (436)
Q Consensus 393 ---~~~---~~~l~s~~~dg~i~iwd~---~~~~~~~~~~ 423 (436)
||| + .|++|+.|++|++||+ .+++.+....
T Consensus 634 ~~~~Dg~~~~-~l~sgs~D~tv~~wd~~p~~~g~~~~~~~ 672 (902)
T 2oaj_A 634 EYGDDGYSSI-LMVCGTDMGEVITYKILPASGGKFDVQLM 672 (902)
T ss_dssp ECTTSSSEEE-EEEEEETTSEEEEEEEEECGGGCEEEEEE
T ss_pred ecCCCCCcce-EEEEEecCCcEEEEEEecCCCCcEEEEec
Confidence 886 6 6999999999999999 6777655433
No 60
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.4e-36 Score=317.96 Aligned_cols=335 Identities=17% Similarity=0.234 Sum_probs=264.2
Q ss_pred HHHhhcccceeeec-----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEE
Q 013827 17 LRLYHSCFRCHKIS-----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCA 91 (436)
Q Consensus 17 ~~~~~~~~~~~~~~-----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 91 (436)
...+.+..|+|+++ +.|+++++|++........ ...|.+.|.+++|+|++++|+++
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~~l~s~ 675 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDDSYIATC 675 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTSSEEEEE
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCCCEEEEE
Confidence 34566777888776 8899999998876543211 12678899999999999999999
Q ss_pred EecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCC--CCcEEEEeeCCCcEEEEeCCCCCCCcce
Q 013827 92 RNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE--KGNFMAVGSMEPAIEIWDLDVIDEVQPH 169 (436)
Q Consensus 92 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~g~~dg~i~vw~~~~~~~~~~~ 169 (436)
+.++ .|.+|+...+.....+..|. ..+.|+.| +| ++.++++|+.||.|++||+.+++...
T Consensus 676 ~~d~-----~v~vwd~~~~~~~~~~~~~~----~~v~~~~~-------~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~-- 737 (1249)
T 3sfz_A 676 SADK-----KVKIWDSATGKLVHTYDEHS----EQVNCCHF-------TNKSNHLLLATGSNDFFLKLWDLNQKECRN-- 737 (1249)
T ss_dssp ETTS-----EEEEEETTTCCEEEEEECCS----SCEEEEEE-------CSSSSCCEEEEEETTSCEEEEETTSSSEEE--
T ss_pred eCCC-----eEEEEECCCCceEEEEcCCC----CcEEEEEE-------ecCCCceEEEEEeCCCeEEEEECCCcchhh--
Confidence 8887 78888887764333333333 33456777 56 66799999999999999998655433
Q ss_pred eeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEE----------
Q 013827 170 VILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL---------- 239 (436)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~---------- 239 (436)
.+.+|...|++++|+|++ .+|++++.||.|++||+.+++....+
T Consensus 738 -------------------------~~~~h~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 791 (1249)
T 3sfz_A 738 -------------------------TMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSE 791 (1249)
T ss_dssp -------------------------EECCCSSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC----
T ss_pred -------------------------eecCCCCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCcccceecccccccccC
Confidence 255799999999999997 59999999999999998776543332
Q ss_pred ---------------------------------------------cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC
Q 013827 240 ---------------------------------------------EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 274 (436)
Q Consensus 240 ---------------------------------------------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 274 (436)
.+|...|.+++|+|++ .++++++.|+.|++||+.
T Consensus 792 ~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~ 870 (1249)
T 3sfz_A 792 DPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNID 870 (1249)
T ss_dssp ----CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETT
T ss_pred CccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcC
Confidence 2577889999999999 899999999999999999
Q ss_pred CCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCC--------------------------
Q 013827 275 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQ-------------------------- 328 (436)
Q Consensus 275 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~-------------------------- 328 (436)
+.........|...|.+++|+|++ ..+++++.||.|++||+............
T Consensus 871 ~~~~~~~~~~h~~~v~~v~~spdg-~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1249)
T 3sfz_A 871 SRLKVADCRGHLSWVHGVMFSPDG-SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI 949 (1249)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEE
T ss_pred CCceeeecCCCccceEEEEECCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEE
Confidence 888777777889999999999987 68999999999999997642111000000
Q ss_pred --cccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCC
Q 013827 329 --QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG 406 (436)
Q Consensus 329 --~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 406 (436)
........+...+.+++|+|++ .++++|+.+|.|++||+.+++ ......+|...|.+++|+|++++ |++++.||
T Consensus 950 ~~~~~~~~~~~~~~i~~~~~sp~g-~~l~~g~~~g~i~i~d~~~~~--~~~~~~~h~~~v~~l~~s~dg~~-l~s~~~dg 1025 (1249)
T 3sfz_A 950 AGKTGQIDYLPEAQVSCCCLSPHL-EYVAFGDEDGAIKIIELPNNR--VFSSGVGHKKAVRHIQFTADGKT-LISSSEDS 1025 (1249)
T ss_dssp EESSCCEEEECCSCEEEEEECTTS-SEEEEEETTSCCEEEETTTTS--CEEECCCCSSCCCCEEECSSSSC-EEEECSSS
T ss_pred ecCcceEEEcccCcEEEEEEcCCC-CEEEEEcCCCCEEEEEcCCCc--eeeecccCCCceEEEEECCCCCE-EEEEcCCC
Confidence 0000112235679999999998 899999999999999999887 45667789999999999999995 89999999
Q ss_pred cEEEEeCCCCcccc
Q 013827 407 KLEIWDTLSDAGIS 420 (436)
Q Consensus 407 ~i~iwd~~~~~~~~ 420 (436)
.|++||+.+++.+.
T Consensus 1026 ~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A 1026 VIQVWNWQTGDYVF 1039 (1249)
T ss_dssp BEEEEETTTTEEEC
T ss_pred EEEEEECCCCceEE
Confidence 99999999887653
No 61
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3e-35 Score=268.44 Aligned_cols=244 Identities=21% Similarity=0.285 Sum_probs=197.5
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
.+++++||+|+.|++|++||+...+.... .......+.+|...|.+++|+|++ .++++|
T Consensus 36 ~~d~~~l~sgs~D~~v~iWd~~~~~~~~~--------------------~~~~~~~l~~h~~~V~~~~~~~~~-~~l~s~ 94 (343)
T 2xzm_R 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGY--------------------FGIPHKALTGHNHFVSDLALSQEN-CFAISS 94 (343)
T ss_dssp TCCCCEEEEEETTSCEEEEEECSSCCSSB--------------------SEEEEEEECCCSSCEEEEEECSST-TEEEEE
T ss_pred CCCCCEEEEEcCCCEEEEEECCcCCcccc--------------------cccccchhccCCCceEEEEECCCC-CEEEEE
Confidence 34899999999999999999875432210 112234467899999999999996 599999
Q ss_pred eCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc--ceEeeeCCeeEEEeCCC
Q 013827 220 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAWDPH 297 (436)
Q Consensus 220 ~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~i~~~~~~~~ 297 (436)
+.|++|++||+++++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+....... ....+...+.+++|+|+
T Consensus 95 s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 173 (343)
T 2xzm_R 95 SWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPI 173 (343)
T ss_dssp ETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCC
T ss_pred cCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccc
Confidence 999999999999999999999999999999999999 899999999999999997432211 11256778999999997
Q ss_pred CC---------cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 013827 298 AE---------HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 368 (436)
Q Consensus 298 ~~---------~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~ 368 (436)
+. .++++++.|+.|++||.. . .....+..|...|.+++|+|++ .+|++|+.|+.|++||+
T Consensus 174 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~---------~~~~~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 174 MKSANKVQPFAPYFASVGWDGRLKVWNTN-F---------QIRYTFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDI 242 (343)
T ss_dssp CCSCSCCCSSCCEEEEEETTSEEEEEETT-T---------EEEEEEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEES
T ss_pred cccccccCCCCCEEEEEcCCCEEEEEcCC-C---------ceeEEEcCccccceEEEECCCC-CEEEEEcCCCeEEEEEC
Confidence 62 589999999999999943 2 4466788999999999999998 89999999999999999
Q ss_pred CCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccc
Q 013827 369 SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 420 (436)
Q Consensus 369 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (436)
........ .+ .+...|.+++|+|++. +++ ++.|+.|++||+.+++...
T Consensus 243 ~~~~~~~~-~~-~~~~~v~~v~~sp~~~-~la-~~~d~~v~iw~~~~~~~~~ 290 (343)
T 2xzm_R 243 LNLTYPQR-EF-DAGSTINQIAFNPKLQ-WVA-VGTDQGVKIFNLMTQSKAP 290 (343)
T ss_dssp SCCSSCSE-EE-ECSSCEEEEEECSSSC-EEE-EEESSCEEEEESSSCCSCS
T ss_pred CCCcccce-ee-cCCCcEEEEEECCCCC-EEE-EECCCCEEEEEeCCCCCCc
Confidence 54332111 22 2345799999999998 455 5568889999998876543
No 62
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.6e-35 Score=301.32 Aligned_cols=290 Identities=19% Similarity=0.237 Sum_probs=243.8
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
..|.+.|.+++|+|++++|++++.++ .|.+|+...+.....+..|. ..+.++.| +|++++|++|
T Consensus 10 ~~h~~~v~~i~~sp~~~~la~~~~~g-----~v~iwd~~~~~~~~~~~~~~----~~v~~~~~-------s~~~~~l~~~ 73 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSG-----RVEIWNYETQVEVRSIQVTE----TPVRAGKF-------IARKNWIIVG 73 (814)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTS-----EEEEEETTTTEEEEEEECCS----SCEEEEEE-------EGGGTEEEEE
T ss_pred ecCCCceEEEEECCCCCEEEEEeCCC-----EEEEEECCCCceEEEEecCC----CcEEEEEE-------eCCCCEEEEE
Confidence 36788999999999999999998876 78888876653222333232 33467777 8999999999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+.||.|+|||+.+++.... +.+|...|++++|+|++ .+|++++.||.|++||
T Consensus 74 ~~dg~i~vw~~~~~~~~~~---------------------------~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~ 125 (814)
T 3mkq_A 74 SDDFRIRVFNYNTGEKVVD---------------------------FEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWN 125 (814)
T ss_dssp ETTSEEEEEETTTCCEEEE---------------------------EECCSSCEEEEEECSSS-SEEEEEETTSEEEEEE
T ss_pred eCCCeEEEEECCCCcEEEE---------------------------EecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEE
Confidence 9999999999986554332 45799999999999997 5899999999999999
Q ss_pred CCCC-eEEEEEcccCCCeEEEEEcC-CCCCEEEEEECCCcEEEEecCCCCCccceEeee-CCeeEEEeCC--CCCcEEEE
Q 013827 230 VAAG-KCNLTLEHHTDKVQAVAWNH-HSPQILLSGSFDRSVVMKDARISTHSGFKWAVA-ADVESLAWDP--HAEHSFVV 304 (436)
Q Consensus 230 ~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~i~~~~~~~--~~~~~~~~ 304 (436)
+.++ .....+.+|...|.+++|+| ++ ..+++++.||.|++||+++.........+. ..+..++|+| ++ .++++
T Consensus 126 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~ 203 (814)
T 3mkq_A 126 WENNWALEQTFEGHEHFVMCVAFNPKDP-STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK-PYMIT 203 (814)
T ss_dssp GGGTSEEEEEEECCSSCEEEEEEETTEE-EEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTC-CEEEE
T ss_pred CCCCceEEEEEcCCCCcEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCC-CEEEE
Confidence 9887 67788889999999999999 66 899999999999999998877665454444 8899999999 66 68999
Q ss_pred EeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCC
Q 013827 305 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG 384 (436)
Q Consensus 305 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 384 (436)
++.||.|++||+++. ..+..+..|...|.+++|+|++ .+|++++.||.|++||+.+++ ....+..|..
T Consensus 204 ~~~dg~i~~~d~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~--~~~~~~~~~~ 271 (814)
T 3mkq_A 204 ASDDLTIKIWDYQTK---------SCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYK--VEKTLNVGLE 271 (814)
T ss_dssp ECTTSEEEEEETTTT---------EEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCS--EEEEECCSSS
T ss_pred EeCCCEEEEEECCCC---------cEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc--EEEEeecCCC
Confidence 999999999999887 6678888999999999999998 899999999999999999887 5666777888
Q ss_pred cEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 385 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 385 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
.+.+++|+|++..++++++.++.+.+|++..+.
T Consensus 272 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 272 RSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp SEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred cEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 999999999997654556667889999987654
No 63
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.3e-35 Score=279.16 Aligned_cols=316 Identities=13% Similarity=0.220 Sum_probs=220.4
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCC-----------Cceeeecccc--------cCcCccee
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD-----------PNLYVHHHII--------IPAFPLCM 130 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~-----------~~~~~~~~~~--------~~~~~~~~ 130 (436)
..+.+.|.+++|+|+|++||+|+.++ .|.+|+...... ...+..|... +...+.++
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg-----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l 99 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGG-----RVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKI 99 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTS-----EEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEE
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCC-----eEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEE
Confidence 35678999999999999999999887 666666654421 1122233200 01335667
Q ss_pred ecccCCCCCCCCC--cEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCC---------------Cccccc
Q 013827 131 AWLDCPLKDREKG--NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKG---------------KKSSIK 193 (436)
Q Consensus 131 ~~~~~~~~~s~~~--~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 193 (436)
+| +|++ .+|++++.||.|++|++.+.........+...... ....... ......
T Consensus 100 ~~-------~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
T 3dw8_B 100 RW-------LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGR--YRDPTTVTTLRVPVFRPMDLMVEASPRR 170 (447)
T ss_dssp EE-------CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC----------CCCCCSCCCCEEEEEEEEEEEEEEE
T ss_pred EE-------cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCcccc--ccCcccccceEeccccchheeeeccceE
Confidence 77 7887 89999999999999998754321100000000000 0000000 000011
Q ss_pred ccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCC-CeEEEE-------EcccCCCeEEEEEcCCCCCEEEEEECC
Q 013827 194 YKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-GKCNLT-------LEHHTDKVQAVAWNHHSPQILLSGSFD 265 (436)
Q Consensus 194 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~-~~~~~~-------~~~~~~~v~~~~~~~~~~~~l~s~~~d 265 (436)
....+|...|++++|+|++ .+|++| .|+.|++||+.+ ++.... +.+|...|.+++|+|++..+|++++.|
T Consensus 171 ~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 248 (447)
T 3dw8_B 171 IFANAHTYHINSISINSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK 248 (447)
T ss_dssp EECSCCSSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT
T ss_pred EeccCCCcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC
Confidence 2246899999999999996 589998 799999999984 444442 557999999999999986899999999
Q ss_pred CcEEEEecCCCCC----ccceEeeeC------------CeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCc
Q 013827 266 RSVVMKDARISTH----SGFKWAVAA------------DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ 329 (436)
Q Consensus 266 ~~i~~wd~~~~~~----~~~~~~~~~------------~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~ 329 (436)
|.|++||+++... ......+.. .+.+++|+|++ .++++++. +.|++||++.. ..
T Consensus 249 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~--------~~ 318 (447)
T 3dw8_B 249 GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNME--------NR 318 (447)
T ss_dssp SCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCC--------SS
T ss_pred CeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCC--------cc
Confidence 9999999998775 333444443 89999999987 67888888 99999999873 14
Q ss_pred ccEEEeccCCC---------------eEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeC--------------
Q 013827 330 SSFTLHAHDKA---------------VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN-------------- 380 (436)
Q Consensus 330 ~~~~~~~~~~~---------------v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------------- 380 (436)
++..+..|... +..++|+|++ .+|++|+.||.|++||+.+++...+....
T Consensus 319 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (447)
T 3dw8_B 319 PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKV 397 (447)
T ss_dssp CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS-SEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCE
T ss_pred ccceeeccccccccccccccccccccceEEEECCCC-CEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccc
Confidence 56666666532 2349999998 89999999999999999988743222111
Q ss_pred ----------------CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 381 ----------------PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 381 ----------------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
.+...|..++|+|++. +||+++.++ +++|.-+
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 398 CASGKRKKDEISVDSLDFNKKILHTAWHPKEN-IIAVATTNN-LYIFQDK 445 (447)
T ss_dssp ECSSCCCTTCEEGGGCCTTSCCCEEEECSSSS-EEEEECSSC-EEEEECC
T ss_pred cccCCcccccccccccccCCceeEEEECCCCC-EEEEEecce-eeeeccc
Confidence 2344688999999999 588777665 8888643
No 64
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.7e-35 Score=276.94 Aligned_cols=298 Identities=22% Similarity=0.327 Sum_probs=241.2
Q ss_pred cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCC
Q 013827 31 NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG 110 (436)
Q Consensus 31 ~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~ 110 (436)
+.|+++++|++...+.... ...|.+.|.+++|+ +.++++++.++ .|.+|+...+
T Consensus 136 ~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~--~~~l~s~~~dg-----~i~vwd~~~~ 189 (445)
T 2ovr_B 136 SDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR--DNIIISGSTDR-----TLKVWNAETG 189 (445)
T ss_dssp ETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE--TTEEEEEETTS-----CEEEEETTTT
T ss_pred ECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec--CCEEEEEeCCC-----eEEEEECCcC
Confidence 7899999998875554311 12677889999998 56899998887 7777777665
Q ss_pred CCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcc
Q 013827 111 GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKS 190 (436)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (436)
+....+..|. ....|+.| ++++|++|+.||.|++||+.+++...
T Consensus 190 ~~~~~~~~h~----~~v~~~~~---------~~~~l~s~s~dg~i~~wd~~~~~~~~----------------------- 233 (445)
T 2ovr_B 190 ECIHTLYGHT----STVRCMHL---------HEKRVVSGSRDATLRVWDIETGQCLH----------------------- 233 (445)
T ss_dssp EEEEEECCCS----SCEEEEEE---------ETTEEEEEETTSEEEEEESSSCCEEE-----------------------
T ss_pred cEEEEECCCC----CcEEEEEe---------cCCEEEEEeCCCEEEEEECCCCcEEE-----------------------
Confidence 3222222232 23356655 47789999999999999998654432
Q ss_pred cccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 013827 191 SIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM 270 (436)
Q Consensus 191 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~ 270 (436)
.+.+|...|.+++| ++ .++++|+.||.|++||+.+++.+..+.+|...|.++.| ++ ..+++++.|+.|++
T Consensus 234 ----~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i 303 (445)
T 2ovr_B 234 ----VLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRV 303 (445)
T ss_dssp ----EEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CS-SEEEEEETTSCEEE
T ss_pred ----EEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CC-CEEEEEeCCCeEEE
Confidence 24579999999999 43 48999999999999999999999999999999999999 55 78999999999999
Q ss_pred EecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec---cCCCeEEEEec
Q 013827 271 KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA---HDKAVCTISYN 347 (436)
Q Consensus 271 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~ 347 (436)
||+++.+.......+...+.++.+++ .++++++.||.|++||++++ ..+..+.. |...|.+++|+
T Consensus 304 ~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~~~~v~~~~~~ 371 (445)
T 2ovr_B 304 WDVETGNCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTG---------QCLQTLQGPNKHQSAVTCLQFN 371 (445)
T ss_dssp EETTTCCEEEEECCCCSCEEEEEEET---TEEEEEETTSCEEEEETTTC---------CEEEEECSTTSCSSCEEEEEEC
T ss_pred EECCCCCEEEEEcCCcccEEEEEEeC---CEEEEEeCCCeEEEEECCCC---------cEEEEEccCCCCCCCEEEEEEC
Confidence 99999887776777888898888864 58999999999999999887 55667765 88899999997
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCceeEEee---CCCCCcEEEEEEcCCCCcEEEEEeCCCc----EEEEeCCCC
Q 013827 348 PLVPNLLATGSTDKMVKLWDLSNNQPSCIASR---NPKAGAVFSVAFSEDSPFVLAIGGSKGK----LEIWDTLSD 416 (436)
Q Consensus 348 p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~dg~----i~iwd~~~~ 416 (436)
+ .+|++|+.||.|++||+.+++....... ..|.+.|++++|+|++. ++++|+.||. |.+||+...
T Consensus 372 ~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 372 K---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL-VCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp S---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE-EEEEECSSSSSCCEEEEEECCCC
T ss_pred C---CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEE-EEEEcccCCCCccEEEEEECCCC
Confidence 4 7999999999999999999874333211 46778999999999998 5999999998 999999764
No 65
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-35 Score=266.03 Aligned_cols=239 Identities=22% Similarity=0.344 Sum_probs=190.2
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccc--cCcccceeEEEecCCCCcEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKK--GSHTDSVLGLAWNKEFRNILA 217 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~ 217 (436)
+|+ +||+|+.|++|++||+....... ...+ .+|...|.+++|+|++ .+|+
T Consensus 23 s~~--~las~~~D~~i~lw~~~~~~~~~-------------------------~~~~~~~~h~~~v~~v~~sp~~-~~la 74 (330)
T 2hes_X 23 SQG--ILATGSTDRKIKLVSVKYDDFTL-------------------------IDVLDETAHKKAIRSVAWRPHT-SLLA 74 (330)
T ss_dssp ETT--EEEEEESSSCEEEEECSSSCCEE-------------------------EEEECTTCCCSCEEEEEECTTS-SEEE
T ss_pred CCC--EEEEEcCCCEEEEEEecCCCeEE-------------------------EEEEecCCccCCEEEEEECCCC-CEEE
Confidence 555 99999999999999997532110 1111 2499999999999996 5999
Q ss_pred EEeCCCcEEEEeCCC-------CeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC----CccceEeee
Q 013827 218 SASADKQVKIWDVAA-------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST----HSGFKWAVA 286 (436)
Q Consensus 218 s~~~dg~v~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~ 286 (436)
+|+.|++|++||+.. .+....+.+|...|.+++|+|++ .+|++++.|++|++||++... .......|.
T Consensus 75 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~ 153 (330)
T 2hes_X 75 AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVLQEHS 153 (330)
T ss_dssp EEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCS
T ss_pred EEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCC
Confidence 999999999999853 35677889999999999999999 899999999999999995432 223345688
Q ss_pred CCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC-CCEEEEEeCCCcEEE
Q 013827 287 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV-PNLLATGSTDKMVKL 365 (436)
Q Consensus 287 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~d~~i~i 365 (436)
..|.+++|+|++ .++++++.|++|++||.+... ..++..+.+|...|.+++|+|++ ..+|++|+.|++|++
T Consensus 154 ~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~i 225 (330)
T 2hes_X 154 QDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDD-------WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV 225 (330)
T ss_dssp SCEEEEEECSSS-SEEEEEETTSCEEEEEEETTE-------EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEE
T ss_pred CceEEEEECCCC-CEEEEEcCCCeEEEEECCCCC-------eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEE
Confidence 899999999987 689999999999999987641 24577888999999999999983 268999999999999
Q ss_pred EECCCCCc------eeEEeeCC-CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 366 WDLSNNQP------SCIASRNP-KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 366 wd~~~~~~------~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
||++.... .....+.. |...|.+++|++++ +|++++.||.|+|||..+++
T Consensus 226 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~ 282 (330)
T 2hes_X 226 WKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGE 282 (330)
T ss_dssp EEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTE
T ss_pred EEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCc
Confidence 99875421 23334444 88899999999776 48899999999999998763
No 66
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8e-34 Score=255.98 Aligned_cols=281 Identities=21% Similarity=0.375 Sum_probs=223.2
Q ss_pred cccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcE
Q 013827 76 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI 155 (436)
Q Consensus 76 v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 155 (436)
...|+|||++ +||+|. ++ .|.+|+..+++....+..+. ....+.|++| +|++++||+|+.||+|
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~-----tV~iWd~~tg~~~~~~~~~~--~~~~V~~v~~-------~~~~~~l~sgs~Dg~v 91 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DN-----SVYLWSASSGDILQLLQMEQ--PGEYISSVAW-------IKEGNYLAVGTSSAEV 91 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TT-----EEEEEETTTCCEEEEEECCS--TTCCEEEEEE-------CTTSSEEEEEETTSEE
T ss_pred ceEEEECCCC-EEEEEe-CC-----EEEEEECCCCCEEEEEEecC--CCCeEEEEEE-------CCCCCEEEEEECCCcE
Confidence 5679999986 676664 55 78888887763333332221 2233567777 8999999999999999
Q ss_pred EEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC-e
Q 013827 156 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-K 234 (436)
Q Consensus 156 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~-~ 234 (436)
++|++.+++.+.. +.+|...+.++.+.+ .++++++.++.+++|+.... .
T Consensus 92 ~iw~~~~~~~~~~---------------------------~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~ 141 (318)
T 4ggc_A 92 QLWDVQQQKRLRN---------------------------MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEH 141 (318)
T ss_dssp EEEETTTTEEEEE---------------------------EECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC
T ss_pred EEeecCCceeEEE---------------------------ecCccceEEEeecCC---CEEEEEecCCceEeeecCCCce
Confidence 9999987554432 457888888877654 48999999999999998865 4
Q ss_pred EEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc----ceEeeeCCeeEEEeCCCCCcEEE--EEeCC
Q 013827 235 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG----FKWAVAADVESLAWDPHAEHSFV--VSLED 308 (436)
Q Consensus 235 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~--~~~~d 308 (436)
.+..+.+|...+..+.+.+++ .++++++.|+.|++||+++.+... ....+...+..+.+.|.+..++. +++.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 220 (318)
T 4ggc_A 142 HVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 220 (318)
T ss_dssp EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT
T ss_pred eEEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC
Confidence 567778899999999999999 899999999999999998765432 23345678999999998877654 45678
Q ss_pred CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEe--CCCcEEEEECCCCCceeEEeeCCCCCcE
Q 013827 309 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS--TDKMVKLWDLSNNQPSCIASRNPKAGAV 386 (436)
Q Consensus 309 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v 386 (436)
+.|++||.+.. . ......+...+..+.|+|++ ..+++++ .|+.|++||+++++ .+..+.+|.+.|
T Consensus 221 ~~i~lwd~~~~---------~-~~~~~~~~~~v~~~~~~~~~-~~~~~~sg~~d~~i~iwd~~~~~--~~~~l~gH~~~V 287 (318)
T 4ggc_A 221 RHIRIWNVCSG---------A-CLSAVDAHSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTMA--KVAELKGHTSRV 287 (318)
T ss_dssp CEEEEEETTTC---------C-EEEEEECSSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTCC--EEEEECCCSSCE
T ss_pred CEEEEEecccc---------c-ccccccceeeeeeeeecccc-cceEEEEEcCCCEEEEEECCCCc--EEEEEcCCCCCE
Confidence 99999999876 2 33445677889999999998 5555543 79999999999988 567788999999
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 387 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 387 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
++++|+|++++ |++|+.||+|+|||+....
T Consensus 288 ~~l~~spdg~~-l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 288 LSLTMSPDGAT-VASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEECTTSSC-EEEEETTTEEEEECCSCCC
T ss_pred EEEEEcCCCCE-EEEEecCCeEEEEECCCCC
Confidence 99999999995 9999999999999997643
No 67
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.5e-35 Score=289.15 Aligned_cols=325 Identities=14% Similarity=0.226 Sum_probs=240.8
Q ss_pred HHhhcccceeeec------cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCcc---ccccceeccC-Cce
Q 013827 18 RLYHSCFRCHKIS------NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSE---DLEDMTINPN-DAV 87 (436)
Q Consensus 18 ~~~~~~~~~~~~~------~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~-~~~ 87 (436)
..+.++.|+|+.+ +.|+++++|++...+..... ..|.. .|.+++|+|+ +++
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-------------------~~~~~~~~~v~~~~~~~~~~~~ 221 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD-------------------RTHHKQGSFVRDVEFSPDSGEF 221 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE-------------------CSSSCTTCCEEEEEECSTTCCE
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee-------------------cccCCCCceEEEEEECCCCCCE
Confidence 3456777887764 78999999987765543211 13555 8999999999 999
Q ss_pred EEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCc
Q 013827 88 IVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQ 167 (436)
Q Consensus 88 l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~ 167 (436)
|++++.++ .|.+|+....+....+............++.| + ++++|++++.||.|++||+.+++...
T Consensus 222 l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~-------~-~~~~l~~~~~d~~i~~wd~~~~~~~~ 288 (615)
T 1pgu_A 222 VITVGSDR-----KISCFDGKSGEFLKYIEDDQEPVQGGIFALSW-------L-DSQKFATVGADATIRVWDVTTSKCVQ 288 (615)
T ss_dssp EEEEETTC-----CEEEEETTTCCEEEECCBTTBCCCSCEEEEEE-------S-SSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEEEeCCC-----eEEEEECCCCCEeEEecccccccCCceEEEEE-------c-CCCEEEEEcCCCcEEEEECCCCcEEE
Confidence 99998887 77778776652222220000022233456766 7 89999999999999999998765443
Q ss_pred ceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeE
Q 013827 168 PHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ 247 (436)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~ 247 (436)
..... ...+...+.++.|. ++ .++++++.||.|++||+.+++.+..+.+|...|.
T Consensus 289 ~~~~~-----------------------~~~~~~~~~~~~~~-~~-~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~ 343 (615)
T 1pgu_A 289 KWTLD-----------------------KQQLGNQQVGVVAT-GN-GRIISLSLDGTLNFYELGHDEVLKTISGHNKGIT 343 (615)
T ss_dssp EEECC-----------------------TTCGGGCEEEEEEE-ET-TEEEEEETTSCEEEEETTEEEEEEEECCCSSCEE
T ss_pred EEcCC-----------------------CCcccCceeEEEeC-CC-CeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEE
Confidence 32110 02345778889886 54 5999999999999999998888888877766666
Q ss_pred EEEEcCC---------------------------------CCCEEEEEECCCcEEEEec---------------------
Q 013827 248 AVAWNHH---------------------------------SPQILLSGSFDRSVVMKDA--------------------- 273 (436)
Q Consensus 248 ~~~~~~~---------------------------------~~~~l~s~~~d~~i~~wd~--------------------- 273 (436)
+++| |+ + ..+++++.|+.+++||+
T Consensus 344 ~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~ 421 (615)
T 1pgu_A 344 ALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTA 421 (615)
T ss_dssp EEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCST-TCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEE
T ss_pred EEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCC-cEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEE
Confidence 6665 33 3 34555555555555544
Q ss_pred -----------------------------------------------------CCCCCc-cceEeeeCCeeEEEeCCCCC
Q 013827 274 -----------------------------------------------------RISTHS-GFKWAVAADVESLAWDPHAE 299 (436)
Q Consensus 274 -----------------------------------------------------~~~~~~-~~~~~~~~~i~~~~~~~~~~ 299 (436)
...... .....+...+.+++|+|++
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g- 500 (615)
T 1pgu_A 422 VLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE- 500 (615)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTS-
T ss_pred EEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCC-
Confidence 332221 2223467789999999987
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec-cCCCeEEEEecC----------CCCCEEEEEeCCCcEEEEEC
Q 013827 300 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNP----------LVPNLLATGSTDKMVKLWDL 368 (436)
Q Consensus 300 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p----------~~~~~l~~~~~d~~i~iwd~ 368 (436)
.++++++.||.|++||+.+. ..+..+.+ |...|++++|+| ++ .+|++++.|+.|++||+
T Consensus 501 ~~l~~~~~dg~i~iw~~~~~---------~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~ 570 (615)
T 1pgu_A 501 TYIAAGDVMGKILLYDLQSR---------EVKTSRWAFRTSKINAISWKPAEKGANEEEIEE-DLVATGSLDTNIFIYSV 570 (615)
T ss_dssp SEEEEEETTSCEEEEETTTT---------EEEECCSCCCSSCEEEEEECCCC------CCSC-CEEEEEETTSCEEEEES
T ss_pred CEEEEcCCCCeEEEeeCCCC---------cceeEeecCCCCceeEEEEcCccccccccccCC-CEEEEEcCCCcEEEEEC
Confidence 68999999999999999987 55666666 999999999999 88 89999999999999999
Q ss_pred CCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 369 SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 369 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
.++. ..+..+.+|...|++++|+|+++ |++++.||.|++|++..
T Consensus 571 ~~~~-~~~~~~~~h~~~v~~l~~s~~~~--l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 571 KRPM-KIIKALNAHKDGVNNLLWETPST--LVSSGADACIKRWNVVL 614 (615)
T ss_dssp SCTT-CCEEETTSSTTCEEEEEEEETTE--EEEEETTSCEEEEEEC-
T ss_pred CCCc-eechhhhcCccceEEEEEcCCCC--eEEecCCceEEEEeeec
Confidence 9873 25667888999999999999997 78899999999999875
No 68
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.2e-36 Score=272.47 Aligned_cols=249 Identities=22% Similarity=0.327 Sum_probs=199.6
Q ss_pred cceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEE
Q 013827 127 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 206 (436)
Q Consensus 127 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 206 (436)
+.+++| +|+|++||+|+.|++|+|||+.++.. .....+.+|...|+++
T Consensus 16 V~~v~~-------s~~g~~lasgs~D~~v~lwd~~~~~~-------------------------~~~~~l~gH~~~V~~v 63 (316)
T 3bg1_A 16 IHDAQM-------DYYGTRLATCSSDRSVKIFDVRNGGQ-------------------------ILIADLRGHEGPVWQV 63 (316)
T ss_dssp EEEEEE-------CGGGCEEEEEETTTEEEEEEEETTEE-------------------------EEEEEEECCSSCEEEE
T ss_pred EEEeeE-------cCCCCEEEEEeCCCeEEEEEecCCCc-------------------------EEEEEEcCCCccEEEE
Confidence 356766 89999999999999999999864321 1223366899999999
Q ss_pred EecCC-CCcEEEEEeCCCcEEEEeCCCC--eEEEEEcccCCCeEEEEEcCC--CCCEEEEEECCCcEEEEecCCCCC---
Q 013827 207 AWNKE-FRNILASASADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTH--- 278 (436)
Q Consensus 207 ~~~~~-~~~~l~s~~~dg~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~--- 278 (436)
+|+|+ ...+|++|+.|++|++||++++ +....+.+|...|.+++|+|+ + .+|++++.|+.|++||++....
T Consensus 64 ~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~~~ 142 (316)
T 3bg1_A 64 AWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQWEV 142 (316)
T ss_dssp EECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCEEE
T ss_pred EeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCcce
Confidence 99863 2359999999999999999887 456778889999999999998 5 7899999999999999987532
Q ss_pred ccceEeeeCCeeEEEeCCCC----------------CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeE
Q 013827 279 SGFKWAVAADVESLAWDPHA----------------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 342 (436)
Q Consensus 279 ~~~~~~~~~~i~~~~~~~~~----------------~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 342 (436)
......|...+.+++|+|+. ..++++|+.|+.|++||++.... ......+.+|...|.
T Consensus 143 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~------~~~~~~l~~h~~~V~ 216 (316)
T 3bg1_A 143 KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ------WKEEQKLEAHSDWVR 216 (316)
T ss_dssp CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC------EEEEECCBCCSSCEE
T ss_pred eeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc------cceeeecccCCCceE
Confidence 22234577789999999873 25899999999999999975310 124556788999999
Q ss_pred EEEecCCC---CCEEEEEeCCCcEEEEECCCCCc--eeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 343 TISYNPLV---PNLLATGSTDKMVKLWDLSNNQP--SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 343 ~~~~~p~~---~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
+++|+|++ ..+|++++.|++|++|++.+... .....+..|...|.+++|+|++++ |++++.|+.|+||+...
T Consensus 217 ~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~-las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 217 DVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANI-LAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCC-EEEEESSSCEEEEEECT
T ss_pred EEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCE-EEEEcCCCeEEEEEECC
Confidence 99999985 36899999999999999976311 011123457789999999999994 99999999999999863
No 69
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.8e-34 Score=263.30 Aligned_cols=255 Identities=20% Similarity=0.291 Sum_probs=212.7
Q ss_pred cceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEE
Q 013827 127 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 206 (436)
Q Consensus 127 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 206 (436)
+.|++| +|++++||+|+.||.|++||+.+.... ......+.+|...|+++
T Consensus 14 v~~~~~-------~~~~~~l~~~~~dg~i~iw~~~~~~~~-----------------------~~~~~~~~~~~~~v~~~ 63 (351)
T 3f3f_A 14 VHDVVY-------DFYGRHVATCSSDQHIKVFKLDKDTSN-----------------------WELSDSWRAHDSSIVAI 63 (351)
T ss_dssp EEEEEE-------CSSSSEEEEEETTSEEEEEEECSSSCC-----------------------EEEEEEEECCSSCEEEE
T ss_pred eeEEEE-------cCCCCEEEEeeCCCeEEEEECCCCCCc-----------------------ceecceeccCCCcEEEE
Confidence 467777 899999999999999999999854322 12233356899999999
Q ss_pred EecC--CCCcEEEEEeCCCcEEEEeCCCC---------eEEEEEcccCCCeEEEEEcCC--CCCEEEEEECCCcEEEEec
Q 013827 207 AWNK--EFRNILASASADKQVKIWDVAAG---------KCNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDA 273 (436)
Q Consensus 207 ~~~~--~~~~~l~s~~~dg~v~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~~wd~ 273 (436)
+|+| ++ .+|++++.||.|++||+.++ +.+..+..|...|.+++|+|+ + .++++++.|+.|++||+
T Consensus 64 ~~~~~~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~ 141 (351)
T 3f3f_A 64 DWASPEYG-RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDA 141 (351)
T ss_dssp EECCGGGC-SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEEC
T ss_pred EEcCCCCC-CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecC
Confidence 9999 44 69999999999999999887 567888899999999999999 7 89999999999999999
Q ss_pred CCCCCccceE-------------eeeCCeeEEEeCCC--CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccC
Q 013827 274 RISTHSGFKW-------------AVAADVESLAWDPH--AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD 338 (436)
Q Consensus 274 ~~~~~~~~~~-------------~~~~~i~~~~~~~~--~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 338 (436)
++........ .+...+.+++|+|+ ....+++++.++.+.+|+..... ......+.+|.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~h~ 214 (351)
T 3f3f_A 142 LEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK-------LHVAAKLPGHK 214 (351)
T ss_dssp SSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC-------EEEEEECCCCC
T ss_pred CChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc-------eeeeeecCCCC
Confidence 9877654322 35677999999997 34799999999999888877652 23466778899
Q ss_pred CCeEEEEecCCCC---CEEEEEeCCCcEEEEECCCCC-------------------------------------------
Q 013827 339 KAVCTISYNPLVP---NLLATGSTDKMVKLWDLSNNQ------------------------------------------- 372 (436)
Q Consensus 339 ~~v~~~~~~p~~~---~~l~~~~~d~~i~iwd~~~~~------------------------------------------- 372 (436)
..|++++|+|+++ .+|++++.||.|++||++...
T Consensus 215 ~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (351)
T 3f3f_A 215 SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNL 294 (351)
T ss_dssp SCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSE
T ss_pred cceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccc
Confidence 9999999999873 699999999999999998641
Q ss_pred -ceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 373 -PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 373 -~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
...+..+.+|...|++++|+|+++ +|++++.||.|+||++.+++.+..
T Consensus 295 ~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 295 QVELLSEHDDHNGEVWSVSWNLTGT-ILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp EEEEEEEECTTSSCEEEEEECSSSC-CEEEEETTSCEEEEEECTTSCEEE
T ss_pred cccEEEEEecccccEEEEEEcCCCC-EEEEecCCCcEEEEecCcCcchhh
Confidence 135566778999999999999999 499999999999999998876543
No 70
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.9e-35 Score=313.68 Aligned_cols=365 Identities=15% Similarity=0.167 Sum_probs=260.1
Q ss_pred HHhhcccceeeec-----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEE
Q 013827 18 RLYHSCFRCHKIS-----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCAR 92 (436)
Q Consensus 18 ~~~~~~~~~~~~~-----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 92 (436)
..+.++.|+|+.+ +.|+++++|++.............+.... ..+.......+.+++|+|+++.+++++
T Consensus 744 ~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~s~dg~~l~~~~ 817 (1249)
T 3sfz_A 744 NSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSS------EDPPEDVEVIVKCCSWSADGDKIIVAA 817 (1249)
T ss_dssp SCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------------CCCCCBCCCCBCTTSSEEEEEE
T ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccccccccc------CCccccccceEEEEEECCCCCEEEEEc
Confidence 3456777888765 88999999999766543222211111110 111223455799999999999999987
Q ss_pred ecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeee
Q 013827 93 NEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVIL 172 (436)
Q Consensus 93 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~ 172 (436)
++ .+.+|+..... ..............+++| +|+++++++|+.||.|++|++.++.........
T Consensus 818 -~~-----~v~~~d~~~~~---~~~~~~~~~~~~v~~~~~-------sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h 881 (1249)
T 3sfz_A 818 -KN-----KVLLFDIHTSG---LLAEIHTGHHSTIQYCDF-------SPYDHLAVIALSQYCVELWNIDSRLKVADCRGH 881 (1249)
T ss_dssp -TT-----EEEEEETTTCC---EEEEEECSSSSCCCEEEE-------CSSTTEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred -CC-----cEEEEEecCCC---ceeEEcCCCCCceEEEEE-------cCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC
Confidence 33 77888877652 221111122233455666 899999999999999999999875543221100
Q ss_pred cc-------cchhhhhhcccCCCccccc---------------------------------------------ccccCcc
Q 013827 173 GG-------IDEEKKKKKSKKGKKSSIK---------------------------------------------YKKGSHT 200 (436)
Q Consensus 173 ~~-------~~~~~~~~~~~~~~~~~~~---------------------------------------------~~~~~h~ 200 (436)
.. .+...............+. .....+.
T Consensus 882 ~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1249)
T 3sfz_A 882 LSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPE 961 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECC
T ss_pred ccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEccc
Confidence 00 0000000000000000000 0000112
Q ss_pred cceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc
Q 013827 201 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG 280 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 280 (436)
..+.+++|+|++ .++++|+.||.|++||+.+++....+.+|...|.+++|+|++ .++++++.||.|++||+.++....
T Consensus 962 ~~i~~~~~sp~g-~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A 962 AQVSCCCLSPHL-EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KTLISSSEDSVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp SCEEEEEECTTS-SEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS-SCEEEECSSSBEEEEETTTTEEEC
T ss_pred CcEEEEEEcCCC-CEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCceEE
Confidence 346666677765 466677777777777777777777788899999999999999 899999999999999999876654
Q ss_pred ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCC
Q 013827 281 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD 360 (436)
Q Consensus 281 ~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 360 (436)
...+...+.+++|+|++ .+++++.||.|++||+.++ .....+..|...|.+++|+|++ .+|++++.|
T Consensus 1040 -~~~~~~~v~~~~~~~~~--~l~~~~~dg~v~vwd~~~~---------~~~~~~~~~~~~v~~~~~s~d~-~~l~s~s~d 1106 (1249)
T 3sfz_A 1040 -LQAHQETVKDFRLLQDS--RLLSWSFDGTVKVWNVITG---------RIERDFTCHQGTVLSCAISSDA-TKFSSTSAD 1106 (1249)
T ss_dssp -CBCCSSCEEEEEECSSS--EEEEEESSSEEEEEETTTT---------CCCEEEECCSSCCCCEEECSSS-SSCEEECCS
T ss_pred -EecCCCcEEEEEEcCCC--cEEEEECCCcEEEEECCCC---------ceeEEEcccCCcEEEEEECCCC-CEEEEEcCC
Confidence 45788899999999954 6889999999999999987 5678889999999999999998 899999999
Q ss_pred CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 361 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 361 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
+.|++||+.+++ ....+.+|.+.|++++|+|+++ +|++++.||.|++||+.+++.+...
T Consensus 1107 ~~v~iwd~~~~~--~~~~l~~h~~~v~~~~~s~dg~-~lat~~~dg~i~vwd~~~~~~~~~~ 1165 (1249)
T 3sfz_A 1107 KTAKIWSFDLLS--PLHELKGHNGCVRCSAFSLDGI-LLATGDDNGEIRIWNVSDGQLLHSC 1165 (1249)
T ss_dssp SCCCEECSSSSS--CSBCCCCCSSCEEEEEECSSSS-EEEEEETTSCCCEEESSSSCCCCCC
T ss_pred CcEEEEECCCcc--eeeeeccCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEEe
Confidence 999999999887 4556778999999999999999 5999999999999999999877654
No 71
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-35 Score=279.63 Aligned_cols=298 Identities=13% Similarity=0.145 Sum_probs=223.0
Q ss_pred CCCccccccceecc-CCceEEEEEecCCcceeEEEEEecCC---CC--CCceeeecccccCcCcceeecccCCCCCCCCC
Q 013827 70 DEDSEDLEDMTINP-NDAVIVCARNEDDVSHLEVYILEESD---GG--DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKG 143 (436)
Q Consensus 70 ~~~~~~v~~~~~sp-~~~~l~~~~~~~~~~~~~v~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 143 (436)
..|.+.|.+++|+| ++++|++|+.++ .|.+|+... .. ...+...|. ..+.|++| +|++
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~~~~~~h~----~~v~~~~~-------~~~~ 123 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQG-----VIKIWNLKEIIVGEVYSSSLTYDCS----STVTQITM-------IPNF 123 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTS-----EEEEEEHHHHHTTCCCSCSEEEECS----SCEEEEEE-------CTTS
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCc-----eEEEeECcccccCcccceeeeccCC----CCEEEEEE-------eCCC
Confidence 46889999999999 999999999887 666666543 21 112222333 34467877 8999
Q ss_pred cEEEEeeCCCcEEEEeCC---CCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEE--ecCCCCcEEEE
Q 013827 144 NFMAVGSMEPAIEIWDLD---VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA--WNKEFRNILAS 218 (436)
Q Consensus 144 ~~l~~g~~dg~i~vw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~l~s 218 (436)
++|++|+.||.|++||+. +++........ ..........++...+.++. +++++ .+|++
T Consensus 124 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---------------~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 187 (437)
T 3gre_A 124 DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE---------------CIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVA 187 (437)
T ss_dssp SEEEEEETTSEEEEEEEEEEEETTEEEEEEEE---------------EEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEE
T ss_pred CEEEEEeCCCEEEEEEeccccCCceeeccccc---------------eeEEEEccCcccccCceEEEEEEcCCC-CEEEE
Confidence 999999999999999995 22222110000 00000000111566777777 55775 69999
Q ss_pred EeCCCcEEEEeCCCCeEEEEEcc--cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE-eeeCCeeEEEeC
Q 013827 219 ASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWD 295 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~i~~~~~~ 295 (436)
|+.|+.|++||+++++.+..+.. |...|++++|+|++ .+|++|+.||.|++||+++........ .+...|.+++|+
T Consensus 188 ~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 266 (437)
T 3gre_A 188 LTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVC 266 (437)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEEC
T ss_pred EeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEec
Confidence 99999999999999999999987 89999999999998 899999999999999999876655332 556689999776
Q ss_pred CC---CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEe------------------------c--cCCCeEEEEe
Q 013827 296 PH---AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH------------------------A--HDKAVCTISY 346 (436)
Q Consensus 296 ~~---~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~------------------------~--~~~~v~~~~~ 346 (436)
|. ...++++++.||.|++||+++++ .+..+. + |...|++++|
T Consensus 267 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~ 337 (437)
T 3gre_A 267 QFYGKNSVIVVGGSSKTFLTIWNFVKGH---------CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISV 337 (437)
T ss_dssp TTTCTTEEEEEEESTTEEEEEEETTTTE---------EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEE
T ss_pred cccCCCccEEEEEcCCCcEEEEEcCCCc---------EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEE
Confidence 53 23589999999999999998773 222222 2 6677899999
Q ss_pred cCCCCCEEEEEeCCCcEEEEECCCCCceeEEee-----------------------------------CCCCCcEEEEEE
Q 013827 347 NPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR-----------------------------------NPKAGAVFSVAF 391 (436)
Q Consensus 347 ~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----------------------------------~~~~~~v~~~~~ 391 (436)
+ ++ .+|++|+.|+.|++||+.+++....... ..|...|++++|
T Consensus 338 ~-~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~ 415 (437)
T 3gre_A 338 S-ND-KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSIST 415 (437)
T ss_dssp E-TT-EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEE
T ss_pred C-Cc-eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEee
Confidence 9 55 8999999999999999998764332221 128889999999
Q ss_pred cCC--CCcEEEEEeCCCcEEEEe
Q 013827 392 SED--SPFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 392 ~~~--~~~~l~s~~~dg~i~iwd 412 (436)
+++ +. +|++|+.||.|+||+
T Consensus 416 ~~~~~~~-~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 416 CEVDETP-LLVACDNSGLIGIFQ 437 (437)
T ss_dssp EESSSSE-EEEEEETTSCEEEEC
T ss_pred eccCCce-EEEEEcCCceEEEeC
Confidence 998 55 799999999999995
No 72
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6.7e-35 Score=272.14 Aligned_cols=294 Identities=18% Similarity=0.288 Sum_probs=226.2
Q ss_pred ccccceeccCCceEEE-EEecCCcceeEEEEEecCCCC----CCceeeecccccCcCcceeecccCCCCCCC-CCcEEEE
Q 013827 75 DLEDMTINPNDAVIVC-ARNEDDVSHLEVYILEESDGG----DPNLYVHHHIIIPAFPLCMAWLDCPLKDRE-KGNFMAV 148 (436)
Q Consensus 75 ~v~~~~~sp~~~~l~~-~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~ 148 (436)
....++++|+...+++ ++.++ .|.+|+..... ....+..|. ..+.+++| +| ++++||+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g-----~i~v~~~~~~~~~~~~~~~~~~h~----~~V~~~~~-------~p~~~~~l~s 99 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGG-----AFLVLPLGKTGRVDKNVPLVCGHT----APVLDIAW-------CPHNDNVIAS 99 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSC-----CEEEEETTCCEECCTTCCCBCCCS----SCEEEEEE-------CTTCTTEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCC-----EEEEEECccCCCCCCCCceEecCC----CCEEEEEe-------CCCCCCEEEE
Confidence 4556889998876665 44454 56666654321 112223333 23467777 88 8999999
Q ss_pred eeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEE
Q 013827 149 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 228 (436)
Q Consensus 149 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vw 228 (436)
|+.||.|+|||+.++..... .......+.+|...|.+++|+|++..+|++++.||.|++|
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~--------------------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 159 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLP--------------------LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVW 159 (402)
T ss_dssp EETTSEEEEEECCTTCCSSC--------------------BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEE
T ss_pred EeCCCeEEEEEccCCCCccc--------------------cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEE
Confidence 99999999999987643321 1123344668999999999999976799999999999999
Q ss_pred eCCCCeEEEEE--cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccce-EeeeCC-eeEEEeCCCCCcEEEE
Q 013827 229 DVAAGKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WAVAAD-VESLAWDPHAEHSFVV 304 (436)
Q Consensus 229 d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~~~~~ 304 (436)
|+.+++.+..+ ..|...|.+++|+|++ .+|++++.|+.|++||+++....... ..+... +..+.|+|++ .++++
T Consensus 160 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 237 (402)
T 2aq5_A 160 DVGTGAAVLTLGPDVHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEG-KILTT 237 (402)
T ss_dssp ETTTTEEEEEECTTTCCSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTT-EEEEE
T ss_pred ECCCCCccEEEecCCCCCceEEEEECCCC-CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCC-cEEEE
Confidence 99999999999 8899999999999998 89999999999999999988766654 455554 8999999986 68888
Q ss_pred E---eCCCcEEEEeCCCCCCCCCCCCCcccEEE-eccCCCeEEEEecCCCCCEEE-EEeCCCcEEEEECCCCCc-eeEEe
Q 013827 305 S---LEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLA-TGSTDKMVKLWDLSNNQP-SCIAS 378 (436)
Q Consensus 305 ~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~-~~~~d~~i~iwd~~~~~~-~~~~~ 378 (436)
| +.|+.|++||+++.. .+.... ..|...+.+++|+|++ .+|+ +|+.|+.|++||+.++++ .....
T Consensus 238 g~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~g~~dg~i~i~d~~~~~~~~~~l~ 308 (402)
T 2aq5_A 238 GFSRMSERQVALWDTKHLE--------EPLSLQELDTSSGVLLPFFDPDT-NIVYLCGKGDSSIRYFEITSEAPFLHYLS 308 (402)
T ss_dssp EECTTCCEEEEEEETTBCS--------SCSEEEECCCCSSCEEEEEETTT-TEEEEEETTCSCEEEEEECSSTTCEEEEE
T ss_pred eccCCCCceEEEEcCcccc--------CCceEEeccCCCceeEEEEcCCC-CEEEEEEcCCCeEEEEEecCCCcceEeec
Confidence 8 789999999998863 222222 3577889999999999 6665 566799999999998873 22222
Q ss_pred eCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 379 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 379 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
...|...|.+++|+|++.+ ++ +.++.+++|++.+++.
T Consensus 309 ~~~~~~~v~~~~~sp~~~~-~~--s~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 309 MFSSKESQRGMGYMPKRGL-EV--NKCEIARFYKLHERKC 345 (402)
T ss_dssp EECCSSCCSEEEECCGGGS-CG--GGTEEEEEEEEETTEE
T ss_pred ccccCCcccceEEeccccc-ce--ecceeEEEEEcCCCcE
Confidence 2236689999999999985 54 4577999999988764
No 73
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=267.73 Aligned_cols=249 Identities=23% Similarity=0.349 Sum_probs=206.8
Q ss_pred ceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEE
Q 013827 128 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 207 (436)
Q Consensus 128 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 207 (436)
.|++| +|++++||+|+.||.|+||++.... ......+.+|...|++++
T Consensus 15 ~~~~~-------s~~~~~l~~~~~dg~i~iw~~~~~~-------------------------~~~~~~~~~h~~~v~~~~ 62 (379)
T 3jrp_A 15 HDAVL-------DYYGKRLATCSSDKTIKIFEVEGET-------------------------HKLIDTLTGHEGPVWRVD 62 (379)
T ss_dssp EEEEE-------CSSSSEEEEEETTSCEEEEEEETTE-------------------------EEEEEEECCCSSCEEEEE
T ss_pred EEEEE-------cCCCCEEEEEECCCcEEEEecCCCc-------------------------ceeeeEecCCCCcEEEEE
Confidence 57777 8999999999999999999986311 222334668999999999
Q ss_pred ecCC--CCcEEEEEeCCCcEEEEeCCCCe--EEEEEcccCCCeEEEEEcCC--CCCEEEEEECCCcEEEEecCCCCCcc-
Q 013827 208 WNKE--FRNILASASADKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTHSG- 280 (436)
Q Consensus 208 ~~~~--~~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~- 280 (436)
|+++ + .+|++++.||.|++||+.+++ .+..+..|...|.+++|+|+ + .++++++.|+.|++||++......
T Consensus 63 ~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~ 140 (379)
T 3jrp_A 63 WAHPKFG-TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSP 140 (379)
T ss_dssp ECCGGGC-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCCE
T ss_pred eCCCCCC-CEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCceee
Confidence 9876 5 599999999999999999987 67788889999999999999 7 899999999999999999875433
Q ss_pred -ceEeeeCCeeEEEeCCC------------CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEec
Q 013827 281 -FKWAVAADVESLAWDPH------------AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN 347 (436)
Q Consensus 281 -~~~~~~~~i~~~~~~~~------------~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 347 (436)
....+...+.+++|+|. ...++++++.|+.|++||++.... .......+..|...|.+++|+
T Consensus 141 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~h~~~v~~~~~s 215 (379)
T 3jrp_A 141 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-----TYVLESTLEGHSDWVRDVAWS 215 (379)
T ss_dssp EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT-----EEEEEEEECCCSSCEEEEEEC
T ss_pred EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc-----ceeeEEEEecccCcEeEEEEC
Confidence 34467889999999994 347899999999999999987621 112456778899999999999
Q ss_pred CCC--CCEEEEEeCCCcEEEEECCCCCce---eEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 348 PLV--PNLLATGSTDKMVKLWDLSNNQPS---CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 348 p~~--~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
|++ +.+|++++.||.|++||+++.+.. .......|...|.+++|+|++++ |++++.||.|++|++..+
T Consensus 216 p~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 216 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-LALSGGDNKVTLWKENLE 288 (379)
T ss_dssp CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC-EEEEESSSSEEEEEEEET
T ss_pred CCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCE-EEEecCCCcEEEEeCCCC
Confidence 993 389999999999999999986422 22233447889999999999995 888999999999999854
No 74
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.2e-34 Score=273.82 Aligned_cols=287 Identities=16% Similarity=0.259 Sum_probs=231.0
Q ss_pred CCcccc-ccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 71 EDSEDL-EDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 71 ~~~~~v-~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
+|.+.+ .+ +.+++++|++|+.++ .|.+|+....+....+..|. ..+.+++| +|++ +|++|
T Consensus 119 ~h~~~v~~~--~~~~~~~l~sgs~dg-----~i~vwd~~~~~~~~~~~~h~----~~V~~l~~-------~~~~-~l~s~ 179 (464)
T 3v7d_B 119 GHMTSVITC--LQFEDNYVITGADDK-----MIRVYDSINKKFLLQLSGHD----GGVWALKY-------AHGG-ILVSG 179 (464)
T ss_dssp CCSSSCEEE--EEEETTEEEEEETTS-----CEEEEETTTTEEEEEECCCS----SCEEEEEE-------CSTT-EEEEE
T ss_pred CCCCCcEEE--EEECCCEEEEEcCCC-----cEEEEECCCCcEEEEEeCCC----cCEEEEEE-------cCCC-EEEEE
Confidence 455554 44 445678999999887 77888876653322333333 34467777 6777 99999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecC--CCCcEEEEEeCCCcEEE
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK--EFRNILASASADKQVKI 227 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~l~s~~~dg~v~v 227 (436)
+.||+|++||+.+++... .+.+|...|.+++|++ ++ .++++|+.||.|++
T Consensus 180 s~dg~i~vwd~~~~~~~~---------------------------~~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~v 231 (464)
T 3v7d_B 180 STDRTVRVWDIKKGCCTH---------------------------VFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHV 231 (464)
T ss_dssp ETTSCEEEEETTTTEEEE---------------------------EECCCSSCEEEEEEEESSSC-EEEEEEETTSCEEE
T ss_pred eCCCCEEEEECCCCcEEE---------------------------EECCCCCccEEEEEecCCCC-CEEEEEcCCCcEEE
Confidence 999999999998654332 2557999999999985 53 69999999999999
Q ss_pred EeCCCCeE-----------------------EEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEe
Q 013827 228 WDVAAGKC-----------------------NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA 284 (436)
Q Consensus 228 wd~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 284 (436)
||+.++.. ...+.+|...|.++ ++++ .++++++.|+.|++||+++.+.......
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 308 (464)
T 3v7d_B 232 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQMKCLYILSG 308 (464)
T ss_dssp EECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET-TEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred eeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCC-CEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence 99987642 45677888888887 4556 7899999999999999998887776777
Q ss_pred eeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEE
Q 013827 285 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK 364 (436)
Q Consensus 285 ~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~ 364 (436)
|...+.+++|+|++ ..+++|+.||.|++||++++ ..+..+.+|...|.++.|++ .+|++++.||.|+
T Consensus 309 ~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~ 375 (464)
T 3v7d_B 309 HTDRIYSTIYDHER-KRCISASMDTTIRIWDLENG---------ELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIR 375 (464)
T ss_dssp CSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEECS---SEEEEEETTSEEE
T ss_pred CCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC---------cEEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEE
Confidence 89999999999987 68999999999999999987 67888999999999999984 7999999999999
Q ss_pred EEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccC
Q 013827 365 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 425 (436)
Q Consensus 365 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (436)
+||+++... .... .+...+..++|+|++. ++++++ ||.|++||+.+++.+...+..
T Consensus 376 vwd~~~~~~--~~~~-~~~~~~~~~~~~~~~~-~l~~~~-dg~i~iwd~~~g~~~~~~~~~ 431 (464)
T 3v7d_B 376 GWDANDYSR--KFSY-HHTNLSAITTFYVSDN-ILVSGS-ENQFNIYNLRSGKLVHANILK 431 (464)
T ss_dssp EEETTTCCE--EEEE-ECTTCCCEEEEEECSS-EEEEEE-TTEEEEEETTTCCEEESCTTT
T ss_pred EEECCCCce--eeee-cCCCCccEEEEEeCCC-EEEEec-CCeEEEEECCCCcEEehhhcc
Confidence 999998763 2222 2455778889999998 577777 899999999999988764433
No 75
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.1e-34 Score=273.39 Aligned_cols=281 Identities=21% Similarity=0.370 Sum_probs=224.4
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
.+|...|.+++| +++++++|+.++ .|.+|+....+....+..|.. .+.|++| ++++|++|
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~h~~----~v~~l~~---------~~~~l~sg 189 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDN-----TIKIWDKNTLECKRILTGHTG----SVLCLQY---------DERVIITG 189 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSS-----CEEEEESSSCCEEEEECCCSS----CEEEEEC---------CSSEEEEE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCC-----eEEEEeCCCCeEEEEEcCCCC----cEEEEEE---------CCCEEEEE
Confidence 355667777766 899999999887 777777766533333333432 3356654 68899999
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
+.||.|++||+.+++... .+.+|...|.+++|+++ ++++|+.||.|++||
T Consensus 190 ~~dg~i~vwd~~~~~~~~---------------------------~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd 239 (435)
T 1p22_A 190 SSDSTVRVWDVNTGEMLN---------------------------TLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWD 239 (435)
T ss_dssp ETTSCEEEEESSSCCEEE---------------------------EECCCCSCEEEEECCTT---EEEEEETTSCEEEEE
T ss_pred cCCCeEEEEECCCCcEEE---------------------------EEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEe
Confidence 999999999998755433 24579999999999753 899999999999999
Q ss_pred CCCCeEE---EEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEe
Q 013827 230 VAAGKCN---LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL 306 (436)
Q Consensus 230 ~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 306 (436)
+.+++.. ..+.+|...|.+++| ++ .++++++.||.|++||+++.........+...+.++.+++ .++++|+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~g~ 313 (435)
T 1p22_A 240 MASPTDITLRRVLVGHRAAVNVVDF--DD-KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGS 313 (435)
T ss_dssp CSSSSCCEEEEEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET---TEEEEEE
T ss_pred CCCCCCceeeeEecCCCCcEEEEEe--CC-CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCC---CEEEEEe
Confidence 9887654 677889999999999 45 7899999999999999999888877778889999999953 6899999
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc-------eeEEee
Q 013827 307 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-------SCIASR 379 (436)
Q Consensus 307 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~-------~~~~~~ 379 (436)
.||.|++||++++ ..+..+.+|...|.+++| ++ .+|++|+.||.|++||+.+.+. ..+..+
T Consensus 314 ~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~~~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 381 (435)
T 1p22_A 314 SDNTIRLWDIECG---------ACLRVLEGHEELVRCIRF--DN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL 381 (435)
T ss_dssp TTSCEEEEETTTC---------CEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE
T ss_pred CCCeEEEEECCCC---------CEEEEEeCCcCcEEEEEe--cC-CEEEEEeCCCcEEEEECCCCCCccccccchheeec
Confidence 9999999999987 668889999999999999 34 8999999999999999865431 156677
Q ss_pred CCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 380 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 380 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
.+|.+.|.+++| ++. .|++++.||.|++||+.+......
T Consensus 382 ~~h~~~v~~l~~--~~~-~l~s~s~Dg~i~iwd~~~~~~~~~ 420 (435)
T 1p22_A 382 VEHSGRVFRLQF--DEF-QIVSSSHDDTILIWDFLNDPAAQA 420 (435)
T ss_dssp CCCSSCCCCEEE--CSS-CEEECCSSSEEEEEC---------
T ss_pred cCCCCCeEEEEe--CCC-EEEEEeCCCEEEEEECCCCCCccc
Confidence 889999999999 566 489999999999999988766544
No 76
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.9e-34 Score=257.50 Aligned_cols=252 Identities=16% Similarity=0.211 Sum_probs=197.3
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCC--CCCCceeeecccccCcCcceeecccCCCCCCC--CCcE
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESD--GGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE--KGNF 145 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~ 145 (436)
..|.+.|.+++|+|+|++||+++.++ .|.+|+... .+....+..|.. .+.+++| ++ ++++
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~-----~v~iw~~~~~~~~~~~~l~gH~~----~V~~v~~-------s~~~~g~~ 69 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDK-----TIKIFEVEGETHKLIDTLTGHEG----PVWRVDW-------AHPKFGTI 69 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEBCSSCBCCCEEECCCSS----CEEEEEE-------CCGGGCSE
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCC-----EEEEEecCCCCcEEEEEEccccC----CeEEEEe-------cCCCcCCE
Confidence 47889999999999999999999887 566665543 222333444433 3457777 54 4899
Q ss_pred EEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCC--CCcEEEEEeCCC
Q 013827 146 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE--FRNILASASADK 223 (436)
Q Consensus 146 l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~~~dg 223 (436)
||+|+.||+|+|||+.+++.. ....+.+|...|.+++|+|+ + .+|++++.|+
T Consensus 70 l~s~s~D~~v~iWd~~~~~~~-------------------------~~~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~ 123 (297)
T 2pm7_B 70 LASCSYDGKVMIWKEENGRWS-------------------------QIAVHAVHSASVNSVQWAPHEYG-PMLLVASSDG 123 (297)
T ss_dssp EEEEETTTEEEEEEBSSSCBC-------------------------CCEEECCCSSCEEEEEECCGGGC-SEEEEEETTS
T ss_pred EEEEcCCCEEEEEEcCCCceE-------------------------EEEEeecCCCceeEEEeCcCCCC-cEEEEEECCC
Confidence 999999999999999754321 11224579999999999997 4 5999999999
Q ss_pred cEEEEeCCCCe--EEEEEcccCCCeEEEEEcCCC------------CCEEEEEECCCcEEEEecCCCCC----ccceEee
Q 013827 224 QVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHHS------------PQILLSGSFDRSVVMKDARISTH----SGFKWAV 285 (436)
Q Consensus 224 ~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~------------~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~ 285 (436)
.|++||++++. ....+.+|...|.+++|+|++ ..+|++|+.|++|++||+++... ...+..|
T Consensus 124 ~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H 203 (297)
T 2pm7_B 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203 (297)
T ss_dssp EEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred cEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC
Confidence 99999998763 245677899999999999973 26899999999999999987652 2334568
Q ss_pred eCCeeEEEeCCCC--CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE--eccCCCeEEEEecCCCCCEEEEEeCCC
Q 013827 286 AADVESLAWDPHA--EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL--HAHDKAVCTISYNPLVPNLLATGSTDK 361 (436)
Q Consensus 286 ~~~i~~~~~~~~~--~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~d~ 361 (436)
...|.+++|+|++ ..++++++.|++|++||++..... .....+ ..|...|.+++|+|++ .+|++++.|+
T Consensus 204 ~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~------~~~~~~~~~~~~~~v~~~~~s~~g-~~las~~~D~ 276 (297)
T 2pm7_B 204 SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP------WKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDN 276 (297)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC------CEEEESSSSCCSSCEEEEEECSSS-CCEEEEETTS
T ss_pred CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc------cceeeeecccCCCcEEEEEECCCC-CEEEEEcCCC
Confidence 8899999999985 478999999999999999864210 011122 4678899999999998 8999999999
Q ss_pred cEEEEECCC
Q 013827 362 MVKLWDLSN 370 (436)
Q Consensus 362 ~i~iwd~~~ 370 (436)
.|++|+...
T Consensus 277 ~v~lw~~~~ 285 (297)
T 2pm7_B 277 KVTLWKENL 285 (297)
T ss_dssp CEEEEEECT
T ss_pred cEEEEEECC
Confidence 999999864
No 77
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=8.5e-35 Score=286.42 Aligned_cols=315 Identities=11% Similarity=0.155 Sum_probs=238.9
Q ss_pred HHhhcccceeeec----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccc-cccceecc--CCceEEE
Q 013827 18 RLYHSCFRCHKIS----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSED-LEDMTINP--NDAVIVC 90 (436)
Q Consensus 18 ~~~~~~~~~~~~~----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~sp--~~~~l~~ 90 (436)
..+.+..|+|+.+ +.++++++|+++...-- ..+.. ....|.+. |.+++|+| ++++|++
T Consensus 19 ~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~-------------~~~~~--~~~~h~~~~v~~~~~sp~~~~~~l~s 83 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK-------------VPPVV--QFTGHGSSVVTTVKFSPIKGSQYLCS 83 (615)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCS-------------SCSEE--EECTTTTSCEEEEEECSSTTCCEEEE
T ss_pred CceeEEEECCCCCEEEEecCCeEEEEECCCCCCc-------------cccce--EEecCCCceEEEEEECcCCCCCEEEE
Confidence 3466778888877 56889999987644000 00111 12367788 99999999 9999999
Q ss_pred EEecCCcceeEEEEEecCCC--------CCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCC----CcEEEE
Q 013827 91 ARNEDDVSHLEVYILEESDG--------GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME----PAIEIW 158 (436)
Q Consensus 91 ~~~~~~~~~~~v~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d----g~i~vw 158 (436)
++.++ .|.+|+...+ .....+..| .....+++| +|++++|++++.+ +.|++|
T Consensus 84 ~~~dg-----~v~vw~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~-------s~~~~~l~~~~~~~~~~~~v~~~ 147 (615)
T 1pgu_A 84 GDESG-----KVIVWGWTFDKESNSVEVNVKSEFQVL----AGPISDISW-------DFEGRRLCVVGEGRDNFGVFISW 147 (615)
T ss_dssp EETTS-----EEEEEEEEEEGGGTEEEEEEEEEEECC----SSCEEEEEE-------CTTSSEEEEEECCSSCSEEEEET
T ss_pred ecCCC-----EEEEEeCCCCcccccccccccchhhcc----cccEEEEEE-------eCCCCEEEEeccCCCCccEEEEE
Confidence 98876 5555555321 111111112 233456777 8999999999988 688888
Q ss_pred eCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEE
Q 013827 159 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT 238 (436)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 238 (436)
|.. + ....+.+|...|.+++|+|+++.++++++.|+.|++||+.+++.+..
T Consensus 148 d~~--~---------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~ 198 (615)
T 1pgu_A 148 DSG--N---------------------------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 198 (615)
T ss_dssp TTC--C---------------------------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE
T ss_pred ECC--C---------------------------cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee
Confidence 832 1 12225579999999999999766899999999999999999999999
Q ss_pred EcccCC---CeEEEEEcCC-CCCEEEEEECCCcEEEEecCCCCCccce-E---eeeCCeeEEEeCCCCCcEEEEEeCCCc
Q 013827 239 LEHHTD---KVQAVAWNHH-SPQILLSGSFDRSVVMKDARISTHSGFK-W---AVAADVESLAWDPHAEHSFVVSLEDGT 310 (436)
Q Consensus 239 ~~~~~~---~v~~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~~~~~~~~dg~ 310 (436)
+..|.. .|.+++|+|+ + .++++++.|+.|++||+++.+..... . .+...+.+++|+ ++ .++++++.|+.
T Consensus 199 ~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~ 275 (615)
T 1pgu_A 199 DRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DS-QKFATVGADAT 275 (615)
T ss_dssp ECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSE
T ss_pred ecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CC-CEEEEEcCCCc
Confidence 999999 9999999999 7 89999999999999999988876655 4 788999999999 65 68999999999
Q ss_pred EEEEeCCCCCCCCCCCCCcccEEEecc----CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcE
Q 013827 311 IKGFDIRTAKSDPDSTSQQSSFTLHAH----DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAV 386 (436)
Q Consensus 311 i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 386 (436)
|++||+++. +.+..+..+ ...+.++.|. ++ .++++++.|+.|++||+.+++ .+..+.+|...|
T Consensus 276 i~~wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~~~~g~i~~~d~~~~~--~~~~~~~~~~~v 342 (615)
T 1pgu_A 276 IRVWDVTTS---------KCVQKWTLDKQQLGNQQVGVVAT-GN-GRIISLSLDGTLNFYELGHDE--VLKTISGHNKGI 342 (615)
T ss_dssp EEEEETTTT---------EEEEEEECCTTCGGGCEEEEEEE-ET-TEEEEEETTSCEEEEETTEEE--EEEEECCCSSCE
T ss_pred EEEEECCCC---------cEEEEEcCCCCcccCceeEEEeC-CC-CeEEEEECCCCEEEEECCCCc--EEEEEeCCCCCE
Confidence 999999987 556666655 3677888886 55 899999999999999998765 455566676677
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 013827 387 FSVAFSEDSPFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 387 ~~~~~~~~~~~~l~s~~~dg~i~iwd~ 413 (436)
.+++| |+ +++++.||.|++|++
T Consensus 343 ~~~~~-~~----l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 343 TALTV-NP----LISGSYDGRIMEWSS 364 (615)
T ss_dssp EEEET-TT----TEEEETTSCEEETTT
T ss_pred EEEEe-cC----cEEECCCCeEEEEEc
Confidence 77766 55 344444555555544
No 78
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=8.8e-34 Score=269.70 Aligned_cols=320 Identities=18% Similarity=0.252 Sum_probs=240.9
Q ss_pred cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCC
Q 013827 31 NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG 110 (436)
Q Consensus 31 ~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~ 110 (436)
+.|+++++|++...+.... ...|.+.|.+++|+|++ +|++++.++ .|.+|+...+
T Consensus 139 s~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l~~~~~~-~l~s~s~dg-----~i~vwd~~~~ 193 (464)
T 3v7d_B 139 ADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKYAHGG-ILVSGSTDR-----TVRVWDIKKG 193 (464)
T ss_dssp ETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEEEECSTT-EEEEEETTS-----CEEEEETTTT
T ss_pred cCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEEEEcCCC-EEEEEeCCC-----CEEEEECCCC
Confidence 7889999998766554211 12688899999999998 888888887 7777777665
Q ss_pred CCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcc
Q 013827 111 GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKS 190 (436)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (436)
.....+..|. ....|++|.+ ++++++|++|+.||.|++||+.+............... .........
T Consensus 194 ~~~~~~~~h~----~~v~~l~~~~-----~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 260 (464)
T 3v7d_B 194 CCTHVFEGHN----STVRCLDIVE-----YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL----VFHTPEENP 260 (464)
T ss_dssp EEEEEECCCS----SCEEEEEEEE-----SSSCEEEEEEETTSCEEEEECCCCCCC------CCSSE----EESCGGGCT
T ss_pred cEEEEECCCC----CccEEEEEec-----CCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcce----EeeccCCCe
Confidence 3333333333 3345666632 36889999999999999999987654432111000000 000000112
Q ss_pred cccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 013827 191 SIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM 270 (436)
Q Consensus 191 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~ 270 (436)
.....+.+|...|.++. +++ .++++|+.||.|++||+.+++.+..+.+|...|.+++|+|++ ..+++++.||.|++
T Consensus 261 ~~~~~~~~~~~~v~~~~--~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~v 336 (464)
T 3v7d_B 261 YFVGVLRGHMASVRTVS--GHG-NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER-KRCISASMDTTIRI 336 (464)
T ss_dssp TEEEEECCCSSCEEEEE--EET-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEE
T ss_pred EEEEEccCccceEEEEc--CCC-CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEE
Confidence 23445678999998885 554 599999999999999999999999999999999999999999 89999999999999
Q ss_pred EecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC
Q 013827 271 KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 350 (436)
Q Consensus 271 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 350 (436)
||+++++.......|...+.+++|++ ..+++++.||.|++||+++. ...... .+...+..++|+|++
T Consensus 337 wd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~---------~~~~~~-~~~~~~~~~~~~~~~ 403 (464)
T 3v7d_B 337 WDLENGELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDY---------SRKFSY-HHTNLSAITTFYVSD 403 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTC---------CEEEEE-ECTTCCCEEEEEECS
T ss_pred EECCCCcEEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCC---------ceeeee-cCCCCccEEEEEeCC
Confidence 99999888777778899999999984 68999999999999999876 223333 366778889999998
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceeEEe-eCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 013827 351 PNLLATGSTDKMVKLWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 411 (436)
Q Consensus 351 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 411 (436)
.+|++|+ |+.|++||+++++ .+.. ...|.+.|.+++|+ +..++++++.||.+.+|
T Consensus 404 -~~l~~~~-dg~i~iwd~~~g~--~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 404 -NILVSGS-ENQFNIYNLRSGK--LVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp -SEEEEEE-TTEEEEEETTTCC--EEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEE
T ss_pred -CEEEEec-CCeEEEEECCCCc--EEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEE
Confidence 8999988 8999999999987 3433 56688899999997 44467777778766554
No 79
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.9e-35 Score=275.30 Aligned_cols=310 Identities=10% Similarity=0.100 Sum_probs=231.4
Q ss_pred CCcccchhhhhhHHHHHHHhhcccceeeec---cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccc
Q 013827 1 MSKKISHCVNSRLEEILRLYHSCFRCHKIS---NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLE 77 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 77 (436)
|+++...+ -..++.+...+.++.|+++.= +.|+++++|+++..+..... .... ....|...|.
T Consensus 1 m~~~~~~~-~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-----------~~~~--~~~~h~~~v~ 66 (397)
T 1sq9_A 1 MSKVFIAT-ANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPK-----------DKSY--SHFVHKSGLH 66 (397)
T ss_dssp --CEEEEE-EEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGG-----------GGEE--EEECCTTCEE
T ss_pred Cchhhhhh-hhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCC-----------Ccce--EEecCCCcEE
Confidence 44444344 223445556778888988322 88999999998765421000 0011 1125778899
Q ss_pred cceeccC----C---ceEEEEEecCCcceeEEEEEecCCCCC-----Cceeeecccc-cCcCcceeecccCCCCCC----
Q 013827 78 DMTINPN----D---AVIVCARNEDDVSHLEVYILEESDGGD-----PNLYVHHHII-IPAFPLCMAWLDCPLKDR---- 140 (436)
Q Consensus 78 ~~~~sp~----~---~~l~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~s---- 140 (436)
+++|+|+ + ++|++++.++ .|.+|+...... ...+..|... ....+.++.| +
T Consensus 67 ~~~~~~~~~~~g~~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~ 134 (397)
T 1sq9_A 67 HVDVLQAIERDAFELCLVATTSFSG-----DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW-------GASND 134 (397)
T ss_dssp EEEEEEEEETTTEEEEEEEEEETTS-----CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEE-------ECCC-
T ss_pred EEEEecccccCCccccEEEEEcCCC-----CEEEEEccCCcccccccceeecccccccCCCcEEEEEE-------eeccC
Confidence 9999999 9 9999998886 555555444422 1112222100 0244567777 6
Q ss_pred CCCcE-EEEeeCCCcEEEEeCCC------CCCCcceeeecccchhhhhhcccCCCcccccccc-------cCcccceeEE
Q 013827 141 EKGNF-MAVGSMEPAIEIWDLDV------IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKK-------GSHTDSVLGL 206 (436)
Q Consensus 141 ~~~~~-l~~g~~dg~i~vw~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~~ 206 (436)
|++++ |++|+.||.|++||+.+ .+.+.- .....+ ..|...|.++
T Consensus 135 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~i~~~ 192 (397)
T 1sq9_A 135 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW----------------------SPTLELQGTVESPMTPSQFATSV 192 (397)
T ss_dssp ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC----------------------CCEEEEEEEECCSSSSCCCCCEE
T ss_pred CCCceEEEEEeCCCcEEEEeCCccccccccceeec----------------------cCcceeeeeeccccCCCCCceEE
Confidence 89999 99999999999999986 333320 000012 4588999999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcc---c---CCCeEEEEEcCCCCCEEEEEECC---CcEEEEecCCCC
Q 013827 207 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH---H---TDKVQAVAWNHHSPQILLSGSFD---RSVVMKDARIST 277 (436)
Q Consensus 207 ~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~ 277 (436)
+|+|++ +|++++.||.|++||+++++.+..+.. | ...|.+++|+|++ .+|++++.| +.|++||+++.+
T Consensus 193 ~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~ 269 (397)
T 1sq9_A 193 DISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGE 269 (397)
T ss_dssp EECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCC
T ss_pred EECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCc
Confidence 999995 999999999999999999999999988 8 9999999999998 899999999 999999999887
Q ss_pred CccceEe-------------eeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEe------cc-
Q 013827 278 HSGFKWA-------------VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH------AH- 337 (436)
Q Consensus 278 ~~~~~~~-------------~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~------~~- 337 (436)
....... +...+.+++|+|++ .++++++.||.|++||+++. ..+..+. .|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~~~~ 339 (397)
T 1sq9_A 270 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTK---------ERITTLNMHCDDIEIE 339 (397)
T ss_dssp EEEEECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTT---------EEEEEEECCGGGCSSG
T ss_pred ccceeccCcccccccccccccCCcEEEEEECCCC-CEEEEEeCCCeEEEEEcCCC---------ceeEEEecccCcccch
Confidence 7766666 88999999999987 68999999999999999987 6677777 77
Q ss_pred --------------CCCeEEEEecCCCC---------CEEEEEeCCCcEEEEECCCC
Q 013827 338 --------------DKAVCTISYNPLVP---------NLLATGSTDKMVKLWDLSNN 371 (436)
Q Consensus 338 --------------~~~v~~~~~~p~~~---------~~l~~~~~d~~i~iwd~~~~ 371 (436)
...|++++|+|++. .+|++++.||.|++|++.++
T Consensus 340 ~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 340 EDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp GGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred hhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 99999999999863 59999999999999998765
No 80
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.1e-34 Score=293.06 Aligned_cols=325 Identities=16% Similarity=0.187 Sum_probs=254.4
Q ss_pred HHhhcccceeeec-----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEE
Q 013827 18 RLYHSCFRCHKIS-----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCAR 92 (436)
Q Consensus 18 ~~~~~~~~~~~~~-----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 92 (436)
..+.++.|+|+.+ +.|++++||++........ ...|...|.+++|+|++++|++++
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s~~~~~l~~~~ 74 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFIARKNWIIVGS 74 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEGGGTEEEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEeCCCCEEEEEe
Confidence 3467888999887 7799999999866544211 125677899999999999999998
Q ss_pred ecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeee
Q 013827 93 NEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVIL 172 (436)
Q Consensus 93 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~ 172 (436)
.++ .|.+|+...++....+..|. ..+.+++| +|++++|++|+.||.|++||+.+...
T Consensus 75 ~dg-----~i~vw~~~~~~~~~~~~~~~----~~v~~~~~-------s~~~~~l~~~~~dg~i~vw~~~~~~~------- 131 (814)
T 3mkq_A 75 DDF-----RIRVFNYNTGEKVVDFEAHP----DYIRSIAV-------HPTKPYVLSGSDDLTVKLWNWENNWA------- 131 (814)
T ss_dssp TTS-----EEEEEETTTCCEEEEEECCS----SCEEEEEE-------CSSSSEEEEEETTSEEEEEEGGGTSE-------
T ss_pred CCC-----eEEEEECCCCcEEEEEecCC----CCEEEEEE-------eCCCCEEEEEcCCCEEEEEECCCCce-------
Confidence 876 78888877653333333332 34567777 89999999999999999999975321
Q ss_pred cccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccC-CCeEEEEE
Q 013827 173 GGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHT-DKVQAVAW 251 (436)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-~~v~~~~~ 251 (436)
....+.+|...|.+++|+|++...|++++.||.|++||+.+++....+..+. ..+.+++|
T Consensus 132 -------------------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~ 192 (814)
T 3mkq_A 132 -------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192 (814)
T ss_dssp -------------------EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEE
T ss_pred -------------------EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEE
Confidence 2223557999999999999324699999999999999999888777775544 89999999
Q ss_pred cC--CCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCc
Q 013827 252 NH--HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ 329 (436)
Q Consensus 252 ~~--~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~ 329 (436)
+| ++ .++++++.||.|++||+++.........+...+.+++|+|++ .++++++.||.|++||+.+. .
T Consensus 193 ~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~---------~ 261 (814)
T 3mkq_A 193 YPLPDK-PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTY---------K 261 (814)
T ss_dssp CCSTTC-CEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTC---------S
T ss_pred EECCCC-CEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC---------c
Confidence 99 77 899999999999999999888777667788999999999987 58999999999999999887 6
Q ss_pred ccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCcee--------E-------------------------
Q 013827 330 SSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC--------I------------------------- 376 (436)
Q Consensus 330 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~--------~------------------------- 376 (436)
....+..|...+.+++|+|++..++++.+.++.+.+|++....... +
T Consensus 262 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (814)
T 3mkq_A 262 VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQ 341 (814)
T ss_dssp EEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCS
T ss_pred EEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeeccccccccc
Confidence 6788888999999999999985543444556778889876533211 0
Q ss_pred --------EeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 377 --------ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 377 --------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
.....+...+.+++|+|+|++ +++++ ++.+.+|++...
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~-la~~~-~~~~~i~~~~~~ 387 (814)
T 3mkq_A 342 DEPLSLQTKELGSVDVFPQSLAHSPNGRF-VTVVG-DGEYVIYTALAW 387 (814)
T ss_dssp SSCBCCCCEEECCCSSCCSEEEECTTSSE-EEEEE-TTEEEEEETTTT
T ss_pred CccceeeeecCCCCccCCceeEECCCCCE-EEEec-CCEEEEEECccc
Confidence 011223445789999999994 77666 899999997654
No 81
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.7e-34 Score=260.95 Aligned_cols=285 Identities=15% Similarity=0.184 Sum_probs=225.6
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCc-EEEEe
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAVG 149 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g 149 (436)
.|.+.|.+++|+|++++|++++.++ .|.+|+...... .............+.+++| +|+++ +|++|
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~-----~v~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~-------~~~~~~~l~~~ 75 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDG-----SLTVYKFDIQAK-NVDLLQSLRYKHPLLCCNF-------IDNTDLQIYVG 75 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTS-----EEEEEEEETTTT-EEEEEEEEECSSCEEEEEE-------EESSSEEEEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCC-----eEEEEEeCCCCc-cccceeeeecCCceEEEEE-------CCCCCcEEEEE
Confidence 6889999999999999999998886 666666555420 0111111122344567777 78999 99999
Q ss_pred eCCCcEEEEeC-CCCCCCcceeeecccchhhhhhcccCCCcccccccccC--cccceeEEEecCCCCcEEEEEeCCCcEE
Q 013827 150 SMEPAIEIWDL-DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS--HTDSVLGLAWNKEFRNILASASADKQVK 226 (436)
Q Consensus 150 ~~dg~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 226 (436)
+.||.|++||+ .+.+. ..+.+ |...|.+++|+| + .+|++++.|+.|+
T Consensus 76 ~~dg~i~~wd~~~~~~~----------------------------~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~ 125 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPSF----------------------------QALTNNEANLGICRICKYG-D-DKLIAASWDGLIE 125 (342)
T ss_dssp ETTSCEEEECSSSSSSE----------------------------EECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEE
T ss_pred cCCCeEEEEEeccCCce----------------------------EeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEE
Confidence 99999999999 75432 12446 999999999999 5 5999999999999
Q ss_pred EEeCCC---------CeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC-CCCcc--ceEeeeCCeeEEEe
Q 013827 227 IWDVAA---------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-STHSG--FKWAVAADVESLAW 294 (436)
Q Consensus 227 vwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~--~~~~~~~~i~~~~~ 294 (436)
+||+.+ ++++..+. |...|.+++|+|++ +++++.|+.|++||++. ..... ....+...+.+++|
T Consensus 126 iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~ 201 (342)
T 1yfq_A 126 VIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL 201 (342)
T ss_dssp EECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE
T ss_pred EEcccccccccccccCCeeeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEE
Confidence 999987 66666666 88999999999865 99999999999999998 54332 23356778999999
Q ss_pred CC-CCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCC---------CeEEEEecCCCCCEEEEEeCCCcEE
Q 013827 295 DP-HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK---------AVCTISYNPLVPNLLATGSTDKMVK 364 (436)
Q Consensus 295 ~~-~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~p~~~~~l~~~~~d~~i~ 364 (436)
+| ++ .++++++.||.|++|+++...... .......+..|.. .|.+++|+|++ .+|++++.||.|+
T Consensus 202 ~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~ 276 (342)
T 1yfq_A 202 LPKEQ-EGYACSSIDGRVAVEFFDDQGDDY---NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIIS 276 (342)
T ss_dssp CSGGG-CEEEEEETTSEEEEEECCTTCCST---TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEE
T ss_pred CCCCC-CEEEEEecCCcEEEEEEcCCCccc---ccccceeeecccccccccccceeEEEEEEcCCC-CEEEEecCCceEE
Confidence 99 87 689999999999999997651000 0144667777755 99999999998 8999999999999
Q ss_pred EEECCCCCceeEEeeCCC-CCcEEEEEEcCCCCcEEEEEeCCCc-EEEEe
Q 013827 365 LWDLSNNQPSCIASRNPK-AGAVFSVAFSEDSPFVLAIGGSKGK-LEIWD 412 (436)
Q Consensus 365 iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~dg~-i~iwd 412 (436)
+||+.+++ .+..+..| ...|.+++ |+++ +|++++.||. .+.|.
T Consensus 277 vwd~~~~~--~~~~~~~~h~~~v~~~~--~~~~-~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 277 CWNLQTRK--KIKNFAKFNEDSVVKIA--CSDN-ILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEETTTTE--EEEECCCCSSSEEEEEE--ECSS-EEEEEEECTHHHHCSS
T ss_pred EEcCccHh--HhhhhhcccCCCceEec--CCCC-eEEEEecCCccccccc
Confidence 99999887 46667887 99999999 9998 5999999998 44444
No 82
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.3e-34 Score=268.92 Aligned_cols=279 Identities=19% Similarity=0.293 Sum_probs=218.8
Q ss_pred cccceeeec---cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEEecCCcc
Q 013827 22 SCFRCHKIS---NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVS 98 (436)
Q Consensus 22 ~~~~~~~~~---~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~ 98 (436)
+..|+++-- +-|++++|||+...+... .....+|.+.|.+++|+|+|++||+|+.++
T Consensus 110 ~l~wS~~n~lAvgld~tV~lWd~~tg~~~~-----------------~~~~~~~~~~V~sv~fspdg~~lasgs~Dg--- 169 (420)
T 4gga_A 110 LVDWSSGNVLAVALDNSVYLWSASSGDILQ-----------------LLQMEQPGEYISSVAWIKEGNYLAVGTSSA--- 169 (420)
T ss_dssp CEEECTTSEEEEEETTEEEEEETTTCCEEE-----------------EEECCSTTCCEEEEEECTTSSEEEEEETTS---
T ss_pred eEEECCCCEEEEEeCCEEEEEECCCCCEEE-----------------EEEecCCCCcEEEEEECCCCCEEEEEECCC---
Confidence 455764311 669999999987655421 111235778899999999999999999887
Q ss_pred eeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchh
Q 013827 99 HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE 178 (436)
Q Consensus 99 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 178 (436)
.|.+|+....+....+..|. ....|+.| ++.+|++|+.|+.+++||......
T Consensus 170 --~v~iWd~~~~~~~~~~~~h~----~~v~~~s~---------~~~~l~sgs~d~~i~~~d~~~~~~------------- 221 (420)
T 4gga_A 170 --EVQLWDVQQQKRLRNMTSHS----ARVGSLSW---------NSYILSSGSRSGHIHHHDVRVAEH------------- 221 (420)
T ss_dssp --CEEEEETTTTEEEEEECCCS----SCEEEEEE---------ETTEEEEEETTSEEEEEETTSSSC-------------
T ss_pred --eEEEEEcCCCcEEEEEeCCC----CceEEEee---------CCCEEEEEeCCCceeEeeecccce-------------
Confidence 77777777653333333332 23345544 688999999999999999874332
Q ss_pred hhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCe----EEEEEcccCCCeEEEEEcCC
Q 013827 179 KKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK----CNLTLEHHTDKVQAVAWNHH 254 (436)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~ 254 (436)
....+.+|...+..+.|+|++ .++++++.|+.+++|+..+++ .+.....|...|.+++|+|.
T Consensus 222 -------------~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~ 287 (420)
T 4gga_A 222 -------------HVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 287 (420)
T ss_dssp -------------EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTT
T ss_pred -------------eeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCC
Confidence 223356899999999999997 599999999999999998764 35667789999999999998
Q ss_pred CCCEEEEE--ECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEE-eCCCcEEEEeCCCCCCCCCCCCCccc
Q 013827 255 SPQILLSG--SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSS 331 (436)
Q Consensus 255 ~~~~l~s~--~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~ 331 (436)
+..+++++ +.|++|++||++++.... .......+.++.|+|++..+++++ +.|+.|++||+++. .++
T Consensus 288 ~~~~la~~~gs~D~~I~iwd~~t~~~~~-~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~---------~~v 357 (420)
T 4gga_A 288 QSNVLATGGGTSDRHIRIWNVCSGACLS-AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---------AKV 357 (420)
T ss_dssp CTTEEEEEECTTTCEEEEEETTTTEEEE-EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---------CEE
T ss_pred cccEEEEEeecCCCEEEEEeCCccccce-eeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC---------cEE
Confidence 87787765 479999999999887665 445567899999999886544443 37999999999987 678
Q ss_pred EEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc
Q 013827 332 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 373 (436)
Q Consensus 332 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~ 373 (436)
..+.+|...|++++|+|++ .+|++|+.|++|++||+....+
T Consensus 358 ~~l~gH~~~V~~l~~spdg-~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 358 AELKGHTSRVLSLTMSPDG-ATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp EEECCCSSCEEEEEECTTS-SCEEEEETTTEEEEECCSCSSC
T ss_pred EEEcCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEECCCCCc
Confidence 8999999999999999999 8999999999999999987653
No 83
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=263.47 Aligned_cols=336 Identities=15% Similarity=0.196 Sum_probs=220.8
Q ss_pred HHHhhccccee-eec-----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceecc-CCceEE
Q 013827 17 LRLYHSCFRCH-KIS-----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINP-NDAVIV 89 (436)
Q Consensus 17 ~~~~~~~~~~~-~~~-----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~ 89 (436)
...+.++.|+| +.+ +.|+++++|+++................ .......|...|.+++|+| ++.+|+
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~ 116 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSI------GRDHPDVHRYSVETVQWYPHDTGMFT 116 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEE------CTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccc------cccccccCCCcEEEEEEccCCCcEEE
Confidence 34567788988 665 7899999999986654322211111000 0111235888999999999 778999
Q ss_pred EEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcce
Q 013827 90 CARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPH 169 (436)
Q Consensus 90 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~ 169 (436)
+++.++ .|.+|+.........+. ......++.|.+. ++++.+|++|+.||.|++||+.+++...
T Consensus 117 s~~~d~-----~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~d~~~~~~~~-- 180 (408)
T 4a11_B 117 SSSFDK-----TLKVWDTNTLQTADVFN-----FEETVYSHHMSPV----STKHCLVAVGTRGPKVQLCDLKSGSCSH-- 180 (408)
T ss_dssp EEETTS-----EEEEEETTTTEEEEEEE-----CSSCEEEEEECSS----CSSCCEEEEEESSSSEEEEESSSSCCCE--
T ss_pred EEeCCC-----eEEEeeCCCCccceecc-----CCCceeeeEeecC----CCCCcEEEEEcCCCeEEEEeCCCcceee--
Confidence 988776 78888877652222221 2333456666433 5677899999999999999998655433
Q ss_pred eeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCe-EEEEE---------
Q 013827 170 VILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-CNLTL--------- 239 (436)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~-~~~~~--------- 239 (436)
.+.+|...|.+++|+|++..+|++++.||.|++||++++. ....+
T Consensus 181 -------------------------~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 235 (408)
T 4a11_B 181 -------------------------ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ 235 (408)
T ss_dssp -------------------------EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCC
T ss_pred -------------------------eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccce
Confidence 2457999999999999986679999999999999998765 34444
Q ss_pred ------cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEee----eCCeeEEEeCCCCCcEEEEEeCCC
Q 013827 240 ------EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV----AADVESLAWDPHAEHSFVVSLEDG 309 (436)
Q Consensus 240 ------~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~dg 309 (436)
..|...|.+++|+|++ .+|++++.|+.|++||+++.......... ......+.+.......+++++.++
T Consensus 236 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (408)
T 4a11_B 236 AVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS 314 (408)
T ss_dssp CTTTSSCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT
T ss_pred eeccccccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC
Confidence 5688999999999999 89999999999999999987654432221 111122222223335677788899
Q ss_pred cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEE
Q 013827 310 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV 389 (436)
Q Consensus 310 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 389 (436)
.|++||+.+. ..+..+.+|...|++++|+|++ .+|++++.||.|++||+.+.+... ..... ....
T Consensus 315 ~i~v~d~~~~---------~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~~~--~~~~~---~~~~ 379 (408)
T 4a11_B 315 TIAVYTVYSG---------EQITMLKGHYKTVDCCVFQSNF-QELYSGSRDCNILAWVPSLYEPVP--DDDET---TTKS 379 (408)
T ss_dssp EEEEEETTTC---------CEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEEECC-------------------
T ss_pred EEEEEECcCC---------cceeeeccCCCeEEEEEEcCCC-CEEEEECCCCeEEEEeCCCCCccC--CCCce---Eecc
Confidence 9999999987 6788899999999999999998 899999999999999999887422 22221 1223
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 390 AFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 390 ~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
.+.+.....+.+.+.++.+++|+...
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 380 QLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp --------------------------
T ss_pred ccccccceeecccCccCceeecCCcc
Confidence 44454443567788899999998764
No 84
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.6e-34 Score=270.83 Aligned_cols=258 Identities=16% Similarity=0.194 Sum_probs=200.1
Q ss_pred CcceeecccCCCCCCC-CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCccccee
Q 013827 126 FPLCMAWLDCPLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL 204 (436)
Q Consensus 126 ~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 204 (436)
.+.|++| +| ++++||+|+.||.|+|||+.+.+... ...+.+|.+.|+
T Consensus 121 ~V~~l~~-------~P~~~~~lasGs~dg~i~lWd~~~~~~~~-------------------------~~~~~gH~~~V~ 168 (435)
T 4e54_B 121 RATSLAW-------HPTHPSTVAVGSKGGDIMLWNFGIKDKPT-------------------------FIKGIGAGGSIT 168 (435)
T ss_dssp CEEEEEE-------CSSCTTCEEEEETTSCEEEECSSCCSCCE-------------------------EECCCSSSCCCC
T ss_pred CEEEEEE-------eCCCCCEEEEEeCCCEEEEEECCCCCcee-------------------------EEEccCCCCCEE
Confidence 3578888 77 57899999999999999997654322 222458999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcc--cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccce
Q 013827 205 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK 282 (436)
Q Consensus 205 ~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 282 (436)
+|+|+|.+..+|++|+.||+|++||++++........ +...+.+++|+|++ .+|++|+.||.|++||++... ....
T Consensus 169 ~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~-~~~~ 246 (435)
T 4e54_B 169 GLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKE-LWNL 246 (435)
T ss_dssp EEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCB-CCCS
T ss_pred EEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcce-eEEE
Confidence 9999985457999999999999999987654443333 34467899999999 899999999999999997543 4446
Q ss_pred EeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCc
Q 013827 283 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM 362 (436)
Q Consensus 283 ~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~ 362 (436)
..|...|.+++|+|++..++++++.|+.|++||+++.... .......+|...|++++|+|++ .+|++++.|+.
T Consensus 247 ~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~------~~~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~ 319 (435)
T 4e54_B 247 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK------ASFLYSLPHRHPVNAACFSPDG-ARLLTTDQKSE 319 (435)
T ss_dssp BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS------SCCSBCCBCSSCEEECCBCTTS-SEEEEEESSSC
T ss_pred ecccceEEeeeecCCCceEEEEecCcceeeEEeccccccc------ceEEEeeeccccccceeECCCC-CeeEEEcCCCE
Confidence 6788999999999998889999999999999999886421 1233446799999999999998 89999999999
Q ss_pred EEEEECCCCCceeEEeeCCCCC------cEEEEEEcCCCCcEEEEEe------------CCCcEEEEeCCCCcccccccc
Q 013827 363 VKLWDLSNNQPSCIASRNPKAG------AVFSVAFSEDSPFVLAIGG------------SKGKLEIWDTLSDAGISNRFS 424 (436)
Q Consensus 363 i~iwd~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~ 424 (436)
|++||+.+++. ...+..|.. .+....|+|++.. ++++. .++.|++||..+++.+...+.
T Consensus 320 i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~ 396 (435)
T 4e54_B 320 IRVYSASQWDC--PLGLIPHPHRHFQHLTPIKAAWHPRYNL-IVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD 396 (435)
T ss_dssp EEEEESSSSSS--EEEECCCCCCCCSSSCCCBCEECSSSSC-EEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC
T ss_pred EEEEECCCCcc--ceEEecccccccccceeEEEEEcCCCCE-EEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC
Confidence 99999998774 233333221 2334566676664 44333 346799999999998877665
Q ss_pred CCC
Q 013827 425 KYS 427 (436)
Q Consensus 425 ~~~ 427 (436)
.+.
T Consensus 397 ~~~ 399 (435)
T 4e54_B 397 PES 399 (435)
T ss_dssp SSC
T ss_pred CCC
Confidence 443
No 85
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.9e-33 Score=263.78 Aligned_cols=280 Identities=21% Similarity=0.356 Sum_probs=230.3
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEee
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 150 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 150 (436)
+|.+.|.. ++++++++|++|+.++ .|.+|+....+....+..|. ..+.+++| ++++|++|+
T Consensus 116 ~h~~~v~~-~~~~~g~~l~sg~~dg-----~i~vwd~~~~~~~~~~~~h~----~~v~~~~~---------~~~~l~s~~ 176 (445)
T 2ovr_B 116 GHDDHVIT-CLQFCGNRIVSGSDDN-----TLKVWSAVTGKCLRTLVGHT----GGVWSSQM---------RDNIIISGS 176 (445)
T ss_dssp CSTTSCEE-EEEEETTEEEEEETTS-----CEEEEETTTCCEEEECCCCS----SCEEEEEE---------ETTEEEEEE
T ss_pred ccCCCcEE-EEEEcCCEEEEEECCC-----cEEEEECCCCcEEEEEcCCC----CCEEEEEe---------cCCEEEEEe
Confidence 56665533 4777899999999887 77777776653333333333 23356665 367999999
Q ss_pred CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 013827 151 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 230 (436)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~ 230 (436)
.||+|++||+.+++... .+.+|...|.+++|++ ..+++|+.||.|++||+
T Consensus 177 ~dg~i~vwd~~~~~~~~---------------------------~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~ 226 (445)
T 2ovr_B 177 TDRTLKVWNAETGECIH---------------------------TLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDI 226 (445)
T ss_dssp TTSCEEEEETTTTEEEE---------------------------EECCCSSCEEEEEEET---TEEEEEETTSEEEEEES
T ss_pred CCCeEEEEECCcCcEEE---------------------------EECCCCCcEEEEEecC---CEEEEEeCCCEEEEEEC
Confidence 99999999998654332 2557999999999974 37999999999999999
Q ss_pred CCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCc
Q 013827 231 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT 310 (436)
Q Consensus 231 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~ 310 (436)
.+++.+..+.+|...|.+++| ++ .++++++.|+.|++||+++.........+...+.+++|+ + ..+++++.|+.
T Consensus 227 ~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~ 300 (445)
T 2ovr_B 227 ETGQCLHVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--G-IHVVSGSLDTS 300 (445)
T ss_dssp SSCCEEEEEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC--S-SEEEEEETTSC
T ss_pred CCCcEEEEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEEC--C-CEEEEEeCCCe
Confidence 999999999999999999999 45 789999999999999999888777666788999999993 3 68999999999
Q ss_pred EEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCC---CCCcEE
Q 013827 311 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP---KAGAVF 387 (436)
Q Consensus 311 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~v~ 387 (436)
|++||++++ ..+..+..|...+.++.+++ .+|++|+.||.|++||+++++. +..+.. |...|.
T Consensus 301 i~i~d~~~~---------~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~v~ 366 (445)
T 2ovr_B 301 IRVWDVETG---------NCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQC--LQTLQGPNKHQSAVT 366 (445)
T ss_dssp EEEEETTTC---------CEEEEECCCCSCEEEEEEET---TEEEEEETTSCEEEEETTTCCE--EEEECSTTSCSSCEE
T ss_pred EEEEECCCC---------CEEEEEcCCcccEEEEEEeC---CEEEEEeCCCeEEEEECCCCcE--EEEEccCCCCCCCEE
Confidence 999999987 66788889999999998863 7999999999999999998874 444444 788999
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 388 SVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 388 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
+++|++ . +|++++.||.|++||+.+++.+...
T Consensus 367 ~~~~~~--~-~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 367 CLQFNK--N-FVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp EEEECS--S-EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEECC--C-EEEEEeCCCeEEEEECCCCceeeee
Confidence 999964 4 5999999999999999999887765
No 86
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-34 Score=266.88 Aligned_cols=270 Identities=20% Similarity=0.365 Sum_probs=215.0
Q ss_pred cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCC
Q 013827 31 NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG 110 (436)
Q Consensus 31 ~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~ 110 (436)
+.|+++++|+++...... .....|.+.|.+++|+|++++|++++.++ .|.+|+....
T Consensus 110 ~~d~~v~lw~~~~~~~~~------------------~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~ 166 (401)
T 4aez_A 110 ALERNVYVWNADSGSVSA------------------LAETDESTYVASVKWSHDGSFLSVGLGNG-----LVDIYDVESQ 166 (401)
T ss_dssp EETTEEEEEETTTCCEEE------------------EEECCTTCCEEEEEECTTSSEEEEEETTS-----CEEEEETTTC
T ss_pred ECCCeEEEeeCCCCcEeE------------------eeecCCCCCEEEEEECCCCCEEEEECCCC-----eEEEEECcCC
Confidence 778899999886554321 01123677899999999999999998887 7777777665
Q ss_pred CCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcc
Q 013827 111 GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKS 190 (436)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (436)
.....+..|. ....++.| ++++|++|+.||.|++||+.....
T Consensus 167 ~~~~~~~~~~----~~v~~~~~---------~~~~l~~~~~dg~i~i~d~~~~~~------------------------- 208 (401)
T 4aez_A 167 TKLRTMAGHQ----ARVGCLSW---------NRHVLSSGSRSGAIHHHDVRIANH------------------------- 208 (401)
T ss_dssp CEEEEECCCS----SCEEEEEE---------ETTEEEEEETTSEEEEEETTSSSC-------------------------
T ss_pred eEEEEecCCC----CceEEEEE---------CCCEEEEEcCCCCEEEEecccCcc-------------------------
Confidence 3333333332 33456766 568999999999999999974322
Q ss_pred cccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEE--CCCcE
Q 013827 191 SIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS--FDRSV 268 (436)
Q Consensus 191 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~d~~i 268 (436)
....+.+|...|.+++|+|++ .+|++|+.|+.|++||+.+++....+..|...|.+++|+|++..++++++ .|+.|
T Consensus 209 -~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i 286 (401)
T 4aez_A 209 -QIGTLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQI 286 (401)
T ss_dssp -EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEE
T ss_pred -eeeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEE
Confidence 122355799999999999996 69999999999999999999999999999999999999998878888876 79999
Q ss_pred EEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEE--EeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEe
Q 013827 269 VMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV--SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 346 (436)
Q Consensus 269 ~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 346 (436)
++||+++..... ...+...+.+++|+|++. .+++ |+.||.|++||+.+.. ......+.+|...|.+++|
T Consensus 287 ~i~d~~~~~~~~-~~~~~~~v~~~~~s~~~~-~l~~~~g~~dg~i~v~~~~~~~-------~~~~~~~~~h~~~v~~~~~ 357 (401)
T 4aez_A 287 HFWNAATGARVN-TVDAGSQVTSLIWSPHSK-EIMSTHGFPDNNLSIWSYSSSG-------LTKQVDIPAHDTRVLYSAL 357 (401)
T ss_dssp EEEETTTCCEEE-EEECSSCEEEEEECSSSS-EEEEEECTTTCEEEEEEEETTE-------EEEEEEEECCSSCCCEEEE
T ss_pred EEEECCCCCEEE-EEeCCCcEEEEEECCCCC-eEEEEeecCCCcEEEEecCCcc-------ceeEEEecCCCCCEEEEEE
Confidence 999999877665 445778899999999885 5666 4489999999998752 1334557789999999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEECCCCCc
Q 013827 347 NPLVPNLLATGSTDKMVKLWDLSNNQP 373 (436)
Q Consensus 347 ~p~~~~~l~~~~~d~~i~iwd~~~~~~ 373 (436)
+|++ .+|++++.||.|++|++.+++.
T Consensus 358 s~dg-~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 358 SPDG-RILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp CTTS-SEEEEECTTSEEEEEECCC---
T ss_pred CCCC-CEEEEEeCCCcEEEEECCCCcc
Confidence 9998 8999999999999999998763
No 87
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.7e-33 Score=280.81 Aligned_cols=250 Identities=22% Similarity=0.311 Sum_probs=207.8
Q ss_pred cceeecccCCCCCCCC-CcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeE
Q 013827 127 PLCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG 205 (436)
Q Consensus 127 ~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 205 (436)
+.|++| +|+ +++|++|+.||+|++|++....... ......+.+|...|.+
T Consensus 385 V~~v~~-------~~~~~~~l~s~s~D~~i~~W~~~~~~~~~----------------------~~~~~~~~~h~~~v~~ 435 (694)
T 3dm0_A 385 VTAIAT-------PIDNADIIVSASRDKSIILWKLTKDDKAY----------------------GVAQRRLTGHSHFVED 435 (694)
T ss_dssp EEEEEC-------CTTCCSEEEEEETTSEEEEEECCCSTTCS----------------------CEEEEEEECCSSCEEE
T ss_pred eEEEEe-------cCCCCCEEEEEeCCCcEEEEEccCCCccc----------------------ccccceecCCCCcEEE
Confidence 456666 665 5899999999999999997543221 1122346689999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccc---e
Q 013827 206 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF---K 282 (436)
Q Consensus 206 ~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~---~ 282 (436)
++|+|++ .+|++|+.||+|+|||+.+++....+.+|...|.+++|+|++ .+|++++.|++|++||+........ .
T Consensus 436 v~~s~~g-~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~ 513 (694)
T 3dm0_A 436 VVLSSDG-QFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISEGG 513 (694)
T ss_dssp EEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSST
T ss_pred EEECCCC-CEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceeeccCC
Confidence 9999997 599999999999999999999999999999999999999999 8899999999999999865432221 1
Q ss_pred EeeeCCeeEEEeCCCCC-cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCC
Q 013827 283 WAVAADVESLAWDPHAE-HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK 361 (436)
Q Consensus 283 ~~~~~~i~~~~~~~~~~-~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~ 361 (436)
..|...|.+++|+|++. ..+++++.|+.|++||+++. .....+.+|...|++++|+|++ .+|++|+.|+
T Consensus 514 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~---------~~~~~~~~h~~~v~~v~~spdg-~~l~sg~~Dg 583 (694)
T 3dm0_A 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC---------KLRSTLAGHTGYVSTVAVSPDG-SLCASGGKDG 583 (694)
T ss_dssp TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTS-SEEEEEETTS
T ss_pred CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC---------cEEEEEcCCCCCEEEEEEeCCC-CEEEEEeCCC
Confidence 24677899999999763 58999999999999999876 6677889999999999999998 8999999999
Q ss_pred cEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 362 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 362 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
.|++||+++++ .+..+.. ...|.+++|+|++. ++++ +.++.|+|||+.+++.+...
T Consensus 584 ~i~iwd~~~~~--~~~~~~~-~~~v~~~~~sp~~~-~l~~-~~~~~i~iwd~~~~~~~~~~ 639 (694)
T 3dm0_A 584 VVLLWDLAEGK--KLYSLEA-NSVIHALCFSPNRY-WLCA-ATEHGIKIWDLESKSIVEDL 639 (694)
T ss_dssp BCEEEETTTTE--EEECCBC-SSCEEEEEECSSSS-EEEE-EETTEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCc--eEEEecC-CCcEEEEEEcCCCc-EEEE-EcCCCEEEEECCCCCChhhh
Confidence 99999999887 3444443 45799999999997 4654 45677999999998877654
No 88
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.3e-35 Score=270.40 Aligned_cols=250 Identities=14% Similarity=0.164 Sum_probs=192.8
Q ss_pred cceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEE
Q 013827 127 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 206 (436)
Q Consensus 127 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 206 (436)
+.|++| +|++++||+|+.||.|+|||+.+.. ......+.+|...|.++
T Consensus 14 v~~~~~-------s~~g~~l~~~~~d~~i~iw~~~~~~-------------------------~~~~~~~~~h~~~v~~~ 61 (377)
T 3dwl_C 14 SYEHAF-------NSQRTEFVTTTATNQVELYEQDGNG-------------------------WKHARTFSDHDKIVTCV 61 (377)
T ss_dssp CSCCEE-------CSSSSEEECCCSSSCBCEEEEETTE-------------------------EEECCCBCCCSSCEEEE
T ss_pred EEEEEE-------CCCCCEEEEecCCCEEEEEEccCCc-------------------------eEEEEEEecCCceEEEE
Confidence 346666 8999999999999999999997531 02233366899999999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCe---EEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCC---cc
Q 013827 207 AWNKEFRNILASASADKQVKIWDVAAGK---CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH---SG 280 (436)
Q Consensus 207 ~~~~~~~~~l~s~~~dg~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~ 280 (436)
+|+|++ .+|++++.|+.|++||+.+++ ....+..|...|.+++|+|++ .+|++++.|+.|++||+++... ..
T Consensus 62 ~~s~~~-~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~ 139 (377)
T 3dwl_C 62 DWAPKS-NRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSK 139 (377)
T ss_dssp EECTTT-CCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCE
T ss_pred EEeCCC-CEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeee
Confidence 999996 599999999999999999877 667778899999999999998 8999999999999999998763 33
Q ss_pred ceEe-eeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCC---------CCCcccEEEeccCCCeEEEEecCCC
Q 013827 281 FKWA-VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS---------TSQQSSFTLHAHDKAVCTISYNPLV 350 (436)
Q Consensus 281 ~~~~-~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~p~~ 350 (436)
.... |...+.+++|+|++ .++++++.|+.|++||++........ .....+..+ .|...|.+++|+|++
T Consensus 140 ~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~ 217 (377)
T 3dwl_C 140 HLKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG 217 (377)
T ss_dssp EECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS
T ss_pred EeecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC
Confidence 3444 88899999999987 68999999999999999754321110 012233444 899999999999998
Q ss_pred CCEEEEEeCCCcEEEEECCCCCce--eEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 351 PNLLATGSTDKMVKLWDLSNNQPS--CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 351 ~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
.+|++++.|+.|++||+++++.. .+..+..|...|.+++|+|+++ +|++++.++.+ +|+...
T Consensus 218 -~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 218 -NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESA-IVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp -SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTE-EEEEESSSSEE-EECCCC
T ss_pred -CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCC-EEEEEcCCcEE-EEEeCC
Confidence 89999999999999999988741 1456678889999999999998 57777666555 776653
No 89
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-33 Score=255.86 Aligned_cols=291 Identities=11% Similarity=0.153 Sum_probs=235.0
Q ss_pred HHHHHhhcccceeeec-----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEE
Q 013827 15 EILRLYHSCFRCHKIS-----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIV 89 (436)
Q Consensus 15 ~~~~~~~~~~~~~~~~-----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 89 (436)
.+...+.++.|+++.+ +.|+++++|++...+.... ...|...|.+++|+|++++|+
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~l~ 90 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVDCFTKYCV 90 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEcCCCCEEE
Confidence 3445577888988776 7899999998876544311 125778899999999999999
Q ss_pred EEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCC-----CcEEEEeCCCCC
Q 013827 90 CARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME-----PAIEIWDLDVID 164 (436)
Q Consensus 90 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~vw~~~~~~ 164 (436)
+++.++ .|.+|+....+....+. ....+.++.| +|++++|++++.+ |.|++||+....
T Consensus 91 s~~~dg-----~i~iwd~~~~~~~~~~~-----~~~~v~~~~~-------~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~ 153 (369)
T 3zwl_B 91 TGSADY-----SIKLWDVSNGQCVATWK-----SPVPVKRVEF-------SPCGNYFLAILDNVMKNPGSINIYEIERDS 153 (369)
T ss_dssp EEETTT-----EEEEEETTTCCEEEEEE-----CSSCEEEEEE-------CTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred EEeCCC-----eEEEEECCCCcEEEEee-----cCCCeEEEEE-------ccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence 998887 78888877653222222 3344567777 8999999999999 999999998765
Q ss_pred CCcceeeecccchhhhhhcccCCCcccccccccCccc--ceeEEEecCCCCcEEEEEeCCCcEEEEeCCC-CeEEEEEcc
Q 013827 165 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD--SVLGLAWNKEFRNILASASADKQVKIWDVAA-GKCNLTLEH 241 (436)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~ 241 (436)
........ .......+..|.. .+.+++|+|++ .+|++++.||.|++||+.+ .+.+..+..
T Consensus 154 ~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 216 (369)
T 3zwl_B 154 ATHELTKV----------------SEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYVDSIDL 216 (369)
T ss_dssp TTCCEEEE----------------CSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEEEEEEC
T ss_pred cceeeccc----------------ccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeEEEEec
Confidence 54432211 1122223445655 99999999996 5999999999999999998 788889999
Q ss_pred cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCC------------
Q 013827 242 HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG------------ 309 (436)
Q Consensus 242 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg------------ 309 (436)
|...|.+++|+|++ .+|++++.|+.|++||+++..... ...+...+..++|+|++ ..+++++.++
T Consensus 217 ~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~ 293 (369)
T 3zwl_B 217 HEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQVLK-KYETDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSANEG 293 (369)
T ss_dssp CSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEE-EEECSSCEEEEEECSSS-SEEEEEECCC------------
T ss_pred CCCceeEEEECCCC-CEEEEecCCceEEEEECCCCceee-eecCCCCceeEEecCCC-ceEEEeecCCCceEEEEecCCC
Confidence 99999999999999 899999999999999999877665 34478889999999987 5788888777
Q ss_pred --cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 013827 310 --TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 371 (436)
Q Consensus 310 --~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~ 371 (436)
.+++||+.+. ..+..+.+|...|++++|+|++ .+|++++.||.|++|++..+
T Consensus 294 ~~~i~~~d~~~~---------~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 294 KFEARFYHKIFE---------EEIGRVQGHFGPLNTVAISPQG-TSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp -CEEEEEETTTC---------CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEEECHH
T ss_pred cceeEEEecCCC---------cchhheecccCcEEEEEECCCC-CEEEEEcCCCeEEEEECccc
Confidence 8999999887 6678889999999999999998 89999999999999999764
No 90
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.4e-33 Score=261.41 Aligned_cols=278 Identities=15% Similarity=0.176 Sum_probs=213.7
Q ss_pred HHhhcccceeee-c-----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceecc-CCceEEE
Q 013827 18 RLYHSCFRCHKI-S-----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINP-NDAVIVC 90 (436)
Q Consensus 18 ~~~~~~~~~~~~-~-----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~ 90 (436)
..+.++.|+++. + +.|++++||++...... .......|...|.+++|+| ++++|++
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------------~~~~~~~h~~~v~~~~~~~~~~~~l~s 136 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT-----------------SFIQGMGPGDAITGMKFNQFNTNQLFV 136 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE-----------------EEECCCSTTCBEEEEEEETTEEEEEEE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc-----------------eeeecCCcCCceeEEEeCCCCCCEEEE
Confidence 345677899887 3 78999999988744321 1112236788999999999 7899999
Q ss_pred EEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCccee
Q 013827 91 ARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHV 170 (436)
Q Consensus 91 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~ 170 (436)
++.++ .|.+|+.... ....+..+. .....+.+++| +|++++|++|+.||.|++||+. ++.
T Consensus 137 ~~~d~-----~i~iwd~~~~-~~~~~~~~~-~~~~~v~~~~~-------~~~~~~l~~~~~d~~i~i~d~~-~~~----- 196 (383)
T 3ei3_B 137 SSIRG-----ATTLRDFSGS-VIQVFAKTD-SWDYWYCCVDV-------SVSRQMLATGDSTGRLLLLGLD-GHE----- 196 (383)
T ss_dssp EETTT-----EEEEEETTSC-EEEEEECCC-CSSCCEEEEEE-------ETTTTEEEEEETTSEEEEEETT-SCE-----
T ss_pred EeCCC-----EEEEEECCCC-ceEEEeccC-CCCCCeEEEEE-------CCCCCEEEEECCCCCEEEEECC-CCE-----
Confidence 98887 7777877653 111111111 12234567777 8999999999999999999984 222
Q ss_pred eecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCC----CeEEEEEcccCCCe
Q 013827 171 ILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA----GKCNLTLEHHTDKV 246 (436)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~----~~~~~~~~~~~~~v 246 (436)
...+.+|...|.+++|+|++..+|++++.|+.|++||+.+ +..+..+ +|...|
T Consensus 197 ----------------------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v 253 (383)
T 3ei3_B 197 ----------------------IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPV 253 (383)
T ss_dssp ----------------------EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCE
T ss_pred ----------------------EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCce
Confidence 2224579999999999999755999999999999999987 5666666 699999
Q ss_pred EEEEEcC-CCCCEEEEEECCCcEEEEecCCCCCccceEeee-----------------CCeeEEEeCCCCCcEEEEEeCC
Q 013827 247 QAVAWNH-HSPQILLSGSFDRSVVMKDARISTHSGFKWAVA-----------------ADVESLAWDPHAEHSFVVSLED 308 (436)
Q Consensus 247 ~~~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~~~~d 308 (436)
.+++|+| ++ .+|++++.|+.|++||+++.........+. ..+..++|+|++. + +++.|
T Consensus 254 ~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~-~--s~s~d 329 (383)
T 3ei3_B 254 NAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ-L--LLNDK 329 (383)
T ss_dssp EEEEECTTTS-CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT-T--CTTCC
T ss_pred EEEEEcCCCC-CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcc-c--ccCCC
Confidence 9999999 88 899999999999999999887765444332 3444566677663 2 77799
Q ss_pred CcEEEEeCCCCCCCCCCCCCcccEEEec--cCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 013827 309 GTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 309 g~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~ 370 (436)
+.|++||+.++ ..+..+.. |...+..++|+|++ .+|++|+ |+.|++||+++
T Consensus 330 ~~i~iwd~~~~---------~~~~~l~~~~~~~~~~~~~~s~~g-~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 330 RTIDIYDANSG---------GLVHQLRDPNAAGIISLNKFSPTG-DVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCEEEEETTTC---------CEEEEECBTTBCSCCCEEEECTTS-SEEEEEE-TTEEEEEECC-
T ss_pred CeEEEEecCCC---------ceeeeecCCCCCceEEEEEEecCc-cEEEEec-CCcEEEEecCC
Confidence 99999999987 55777776 56778888999999 8999997 99999999875
No 91
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.7e-33 Score=256.70 Aligned_cols=288 Identities=16% Similarity=0.278 Sum_probs=222.2
Q ss_pred CCCCccccccceeccC---CceEEEEEecCCcceeEEEEEecCC-CCCC-ceeeecccccCcCcceeecccCCCCCCCCC
Q 013827 69 DDEDSEDLEDMTINPN---DAVIVCARNEDDVSHLEVYILEESD-GGDP-NLYVHHHIIIPAFPLCMAWLDCPLKDREKG 143 (436)
Q Consensus 69 ~~~~~~~v~~~~~sp~---~~~l~~~~~~~~~~~~~v~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 143 (436)
...|.+.|.+++|+|+ |++|++++.++ .|.+|+... .... ..+..|. ..+.+++| +|++
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~h~----~~v~~~~~-------~~~~ 98 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWAN-----DVRCWEVQDSGQTIPKAQQMHT----GPVLDVCW-------SDDG 98 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTS-----EEEEEEECTTSCEEEEEEEECS----SCEEEEEE-------CTTS
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCC-----cEEEEEcCCCCceeEEEecccc----CCEEEEEE-------CcCC
Confidence 3578999999999999 59999998886 666666654 2111 2233333 33467777 8999
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEe--cCCCCcEEEEEeC
Q 013827 144 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW--NKEFRNILASASA 221 (436)
Q Consensus 144 ~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~l~s~~~ 221 (436)
++|++|+.||.|++||+.+++... +.+|...|.+++| +|++ .+|++++.
T Consensus 99 ~~l~s~~~dg~v~iwd~~~~~~~~----------------------------~~~~~~~v~~~~~~~~~~~-~~l~~~~~ 149 (368)
T 3mmy_A 99 SKVFTASCDKTAKMWDLSSNQAIQ----------------------------IAQHDAPVKTIHWIKAPNY-SCVMTGSW 149 (368)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEE----------------------------EEECSSCEEEEEEEECSSC-EEEEEEET
T ss_pred CEEEEEcCCCcEEEEEcCCCCcee----------------------------eccccCceEEEEEEeCCCC-CEEEEccC
Confidence 999999999999999998654332 3369999999999 8885 68999999
Q ss_pred CCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE--eeeCCeeEEEeCCCCC
Q 013827 222 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--AVAADVESLAWDPHAE 299 (436)
Q Consensus 222 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~i~~~~~~~~~~ 299 (436)
||.|++||+++++.+..+..+. .+.++.+.+ ..+++++.++.+.+|+++......... ........+.+.++..
T Consensus 150 dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (368)
T 3mmy_A 150 DKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQ 225 (368)
T ss_dssp TSEEEEECSSCSSCSEEEECSS-CEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTT
T ss_pred CCcEEEEECCCCcEEEEEecCC-CceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCC
Confidence 9999999999999888888654 677777764 468889999999999998765432211 2234455555544321
Q ss_pred ---cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCC------------CeEEEEecCCCCCEEEEEeCCCcEE
Q 013827 300 ---HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK------------AVCTISYNPLVPNLLATGSTDKMVK 364 (436)
Q Consensus 300 ---~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~~p~~~~~l~~~~~d~~i~ 364 (436)
..+++++.||.|++||++.... ......+..|.. .|++++|+|++ .+|++++.||.|+
T Consensus 226 ~~~~~~~~~~~dg~i~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~ 298 (368)
T 3mmy_A 226 NKPTGFALGSIEGRVAIHYINPPNP------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFS 298 (368)
T ss_dssp SCEEEEEEEETTSEEEEEESSCSCH------HHHSEEEECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEE
T ss_pred CCCCeEEEecCCCcEEEEecCCCCc------cccceeeeeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEE
Confidence 2399999999999999987621 134566666665 79999999998 8999999999999
Q ss_pred EEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 365 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 365 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
+||+.+++ .+..+..|...|.+++|+|++++ |++++.|+..+.|++..
T Consensus 299 iwd~~~~~--~~~~~~~~~~~v~~~~~s~~g~~-l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 299 FWDKDART--KLKTSEQLDQPISACCFNHNGNI-FAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEETTTTE--EEEECCCCSSCEEEEEECTTSSC-EEEEECCCSTTCGGGCC
T ss_pred EEECCCCc--EEEEecCCCCCceEEEECCCCCe-EEEEecccccccccccC
Confidence 99999877 56677889999999999999995 88898888666555543
No 92
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-34 Score=275.00 Aligned_cols=239 Identities=12% Similarity=0.132 Sum_probs=184.6
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCC-----Cc
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-----RN 214 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----~~ 214 (436)
+|+++.||+++.|++|+||++.+++.... ....+.+|.+.|.+++|+|++ ..
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~-----------------------~~~~l~~~~~~V~~v~wsp~~~~~~~~~ 226 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCV-----------------------KVQTIVHSFGEVWDLKWHEGCHAPHLVG 226 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEE-----------------------EEEEEEECCCSEEEEEECSSCCCSSSSC
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCce-----------------------EEEEEEecCCcEEEEEECCCCCCCCCCc
Confidence 34455566677889999999876443211 111234678899999999962 25
Q ss_pred EEEEEeCCCcEEEEeCCCCeE-----------EEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc-ce
Q 013827 215 ILASASADKQVKIWDVAAGKC-----------NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FK 282 (436)
Q Consensus 215 ~l~s~~~dg~v~vwd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~ 282 (436)
+||+++.||+|++||+.+++. ...+.+|...|++++|+++ ..|++|+.||+|++||+++..... ..
T Consensus 227 ~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV~lWD~~~~~~~~~~~ 304 (524)
T 2j04_B 227 CLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TTVVCGFKNGFVAEFDLTDPEVPSFYD 304 (524)
T ss_dssp EEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--SEEEEEETTSEEEEEETTBCSSCSEEE
T ss_pred eEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEEEEEECCCCCCceEEe
Confidence 999999999999999986632 2467889999999999985 479999999999999999765443 35
Q ss_pred EeeeCCeeEE--EeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCC--CeEEEEecCCCCCEEEEEe
Q 013827 283 WAVAADVESL--AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK--AVCTISYNPLVPNLLATGS 358 (436)
Q Consensus 283 ~~~~~~i~~~--~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~ 358 (436)
..|...|.++ +|+|++.+++++++.|++|++||+++. .....+.+|.. .|.+++|+|++ ..+++++
T Consensus 305 ~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~---------~~~~~~~~~~~~~~v~~v~fsp~~-~~l~s~~ 374 (524)
T 2j04_B 305 QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI---------ATTKTTVSRFRGSNLVPVVYCPQI-YSYIYSD 374 (524)
T ss_dssp ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH---------HHHCEEEEECSCCSCCCEEEETTT-TEEEEEC
T ss_pred ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC---------CcccccccccccCcccceEeCCCc-CeEEEeC
Confidence 6788999999 567765478999999999999999976 44556666653 57899999998 7899999
Q ss_pred CCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 359 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 359 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
.|++|++||+++... ...+.+|.+.|++++|+|++++ |++|+.||+|++||+..+
T Consensus 375 ~d~tv~lwd~~~~~~--~~~l~gH~~~V~sva~Sp~g~~-l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 375 GASSLRAVPSRAAFA--VHPLVSRETTITAIGVSRLHPM-VLAGSADGSLIITNAARR 429 (524)
T ss_dssp SSSEEEEEETTCTTC--CEEEEECSSCEEEEECCSSCCB-CEEEETTTEEECCBSCSS
T ss_pred CCCcEEEEECccccc--ceeeecCCCceEEEEeCCCCCe-EEEEECCCEEEEEechHh
Confidence 999999999998773 3455679999999999999995 899999999999998654
No 93
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.2e-34 Score=258.35 Aligned_cols=255 Identities=21% Similarity=0.276 Sum_probs=193.6
Q ss_pred CCCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCC--CceeeecccccCcCcceeecccCCCCCCC--CCc
Q 013827 69 DDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD--PNLYVHHHIIIPAFPLCMAWLDCPLKDRE--KGN 144 (436)
Q Consensus 69 ~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~ 144 (436)
...|.+.|.+++|+|+|++||+++.++ .|.+|+...+.. ...+..|. ..+.+++| ++ +++
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~-----~v~lwd~~~~~~~~~~~l~gH~----~~V~~v~~-------~~~~~~~ 72 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDR-----SVKIFDVRNGGQILIADLRGHE----GPVWQVAW-------AHPMYGN 72 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTT-----EEEEEEEETTEEEEEEEEECCS----SCEEEEEE-------CCGGGSS
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCC-----eEEEEEecCCCcEEEEEEcCCC----ccEEEEEe-------CCCCCCC
Confidence 347899999999999999999999887 666666544311 11223333 33467777 44 489
Q ss_pred EEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCC-CcEEEEEeCCC
Q 013827 145 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADK 223 (436)
Q Consensus 145 ~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg 223 (436)
+||+|+.|++|++||+.++... ....+.+|...|.+++|+|++ ..+|++|+.|+
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~~-------------------------~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~ 127 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTWE-------------------------KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG 127 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCCC-------------------------EEEEECCCSSCCCEEEECCTTTCSCEEEECSSS
T ss_pred EEEEEECCCEEEEEECCCCcce-------------------------EEEEccCCCCceEEEEECCCCCCcEEEEEcCCC
Confidence 9999999999999999754321 112355799999999999972 25899999999
Q ss_pred cEEEEeCCCCeE---EEEEcccCCCeEEEEEcCCC----------------CCEEEEEECCCcEEEEecCCCC---Cccc
Q 013827 224 QVKIWDVAAGKC---NLTLEHHTDKVQAVAWNHHS----------------PQILLSGSFDRSVVMKDARIST---HSGF 281 (436)
Q Consensus 224 ~v~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~----------------~~~l~s~~~d~~i~~wd~~~~~---~~~~ 281 (436)
+|++||+..+.. ...+.+|...|.+++|+|+. ..+|++|+.|+.|++||++... ....
T Consensus 128 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~ 207 (316)
T 3bg1_A 128 AISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK 207 (316)
T ss_dssp CEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEEC
T ss_pred CEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeee
Confidence 999999987632 34457899999999999973 1589999999999999997543 3334
Q ss_pred eEeeeCCeeEEEeCCCC---CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEe
Q 013827 282 KWAVAADVESLAWDPHA---EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS 358 (436)
Q Consensus 282 ~~~~~~~i~~~~~~~~~---~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 358 (436)
+..|...|.+++|+|++ ..++++++.|++|++|++...... ......+..|...|.+++|+|++ .+|++++
T Consensus 208 l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~-----~~~~~~~~~~~~~v~~v~~sp~g-~~las~~ 281 (316)
T 3bg1_A 208 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSN-----TWSPKLLHKFNDVVWHVSWSITA-NILAVSG 281 (316)
T ss_dssp CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCC-----CCBCCEEEECSSCEEEEEECTTT-CCEEEEE
T ss_pred cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcccc-----chhhhhhhcCCCcEEEEEEcCCC-CEEEEEc
Confidence 55788899999999975 368999999999999999763110 01123456789999999999998 8999999
Q ss_pred CCCcEEEEECCC
Q 013827 359 TDKMVKLWDLSN 370 (436)
Q Consensus 359 ~d~~i~iwd~~~ 370 (436)
.|+.|++|+...
T Consensus 282 ~D~~v~lw~~~~ 293 (316)
T 3bg1_A 282 GDNKVTLWKESV 293 (316)
T ss_dssp SSSCEEEEEECT
T ss_pred CCCeEEEEEECC
Confidence 999999999763
No 94
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=8.8e-34 Score=268.29 Aligned_cols=260 Identities=16% Similarity=0.282 Sum_probs=199.8
Q ss_pred cCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcc----
Q 013827 125 AFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT---- 200 (436)
Q Consensus 125 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---- 200 (436)
..+.|++| +|+|++||+|+.||.|+||++.+.+.... ...........+.+|.
T Consensus 29 ~~V~~v~~-------s~~g~~la~g~~dg~v~iw~~~~~~~~~~----------------~~~~~~~~~~~~~~h~~~~~ 85 (447)
T 3dw8_B 29 DIISTVEF-------NHSGELLATGDKGGRVVIFQQEQENKIQS----------------HSRGEYNVYSTFQSHEPEFD 85 (447)
T ss_dssp GSEEEEEE-------CSSSSEEEEEETTSEEEEEEECC-----C----------------CCCCCEEEEEEEECCCCEEE
T ss_pred CcEEEEEE-------CCCCCEEEEEcCCCeEEEEEecCCCCCCc----------------ccccceeEeccccccccccc
Confidence 34567877 89999999999999999999986552111 0001122344566787
Q ss_pred --------cceeEEEecCCCC-cEEEEEeCCCcEEEEeCCCCeEE-----------------------------------
Q 013827 201 --------DSVLGLAWNKEFR-NILASASADKQVKIWDVAAGKCN----------------------------------- 236 (436)
Q Consensus 201 --------~~v~~~~~~~~~~-~~l~s~~~dg~v~vwd~~~~~~~----------------------------------- 236 (436)
..|++++|+|++. .+|++++.|+.|++||+.+++..
T Consensus 86 ~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 165 (447)
T 3dw8_B 86 YLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVE 165 (447)
T ss_dssp GGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEE
T ss_pred ccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeee
Confidence 8899999999963 48999999999999998764432
Q ss_pred ----EE-EcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc--------ceEeeeCCeeEEEeCCCCCcEEE
Q 013827 237 ----LT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--------FKWAVAADVESLAWDPHAEHSFV 303 (436)
Q Consensus 237 ----~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--------~~~~~~~~i~~~~~~~~~~~~~~ 303 (436)
.. ..+|...|.+++|+|++ .+|++| .|+.|++||++...... ....|...+.+++|+|++..+++
T Consensus 166 ~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 243 (447)
T 3dw8_B 166 ASPRRIFANAHTYHINSISINSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFV 243 (447)
T ss_dssp EEEEEEECSCCSSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEE
T ss_pred ccceEEeccCCCcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEE
Confidence 12 36799999999999998 889998 79999999998433222 13367888999999998767999
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCC------------CeEEEEecCCCCCEEEEEeCCCcEEEEECCC-
Q 013827 304 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK------------AVCTISYNPLVPNLLATGSTDKMVKLWDLSN- 370 (436)
Q Consensus 304 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~- 370 (436)
+++.||.|++||+++.... ......+..|.. .|.+++|+|++ .+|++++. +.|++||++.
T Consensus 244 s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~ 316 (447)
T 3dw8_B 244 YSSSKGTIRLCDMRASALC-----DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNME 316 (447)
T ss_dssp EEETTSCEEEEETTTCSSS-----CTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCC
T ss_pred EEeCCCeEEEEECcCCccc-----cceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCC
Confidence 9999999999999987321 012566777765 89999999998 89999999 9999999987
Q ss_pred CCceeEEeeCCCCCc---------------EEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccc
Q 013827 371 NQPSCIASRNPKAGA---------------VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 419 (436)
Q Consensus 371 ~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (436)
++. +..+..|... +..++|+|++++ |++++.||.|++||+.+++.+
T Consensus 317 ~~~--~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~-l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 317 NRP--VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV-VMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp SSC--SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSE-EEEECSTTEEEEEETTTCCEE
T ss_pred ccc--cceeeccccccccccccccccccccceEEEECCCCCE-EEEeccCCEEEEEEcCCCcce
Confidence 553 3344445321 334999999995 899999999999999998876
No 95
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=259.05 Aligned_cols=300 Identities=12% Similarity=0.123 Sum_probs=224.0
Q ss_pred HHhhcccceeeec------cC---CCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccC---C
Q 013827 18 RLYHSCFRCHKIS------NA---SNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPN---D 85 (436)
Q Consensus 18 ~~~~~~~~~~~~~------~~---~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~ 85 (436)
..+.++.|+|+.. +. |+++++|++...+... .. ..+|...|.+++|+|+ +
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~---------------~~---~~~~~~~v~~~~~~~~~~~~ 80 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL---------------LR---EIEKAKPIKCGTFGATSLQQ 80 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE---------------EE---EEEESSCEEEEECTTCCTTT
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc---------------ee---eecccCcEEEEEEcCCCCCC
Confidence 3567888998764 32 8999999987654321 11 1146778999999999 6
Q ss_pred ceEEEEEecCCcceeEEEEEecCCCC-CCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCC
Q 013827 86 AVIVCARNEDDVSHLEVYILEESDGG-DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVID 164 (436)
Q Consensus 86 ~~l~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~ 164 (436)
.+|++++.++ .|.+|+..... ....+..|.. ...++.|.+ .++|+|++++|++|+.||.|++||+.+.+
T Consensus 81 ~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~----~v~~~~~~~-~~~~s~~~~~l~~~~~d~~i~vwd~~~~~ 150 (357)
T 3i2n_A 81 RYLATGDFGG-----NLHIWNLEAPEMPVYSVKGHKE----IINAIDGIG-GLGIGEGAPEIVTGSRDGTVKVWDPRQKD 150 (357)
T ss_dssp CCEEEEETTS-----CEEEECTTSCSSCSEEECCCSS----CEEEEEEES-GGGCC-CCCEEEEEETTSCEEEECTTSCS
T ss_pred ceEEEecCCC-----eEEEEeCCCCCccEEEEEeccc----ceEEEeecc-ccccCCCccEEEEEeCCCeEEEEeCCCCC
Confidence 9999998887 77778777654 3333333433 335666642 23568999999999999999999998755
Q ss_pred C-CcceeeecccchhhhhhcccCCCcccccccccCcccceeEEE----ecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEE
Q 013827 165 E-VQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA----WNKEFRNILASASADKQVKIWDVAAGKCNLTL 239 (436)
Q Consensus 165 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~----~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 239 (436)
. ...... ....+...|.+++ |+|++ .+|++++.||.|++||+++++....
T Consensus 151 ~~~~~~~~-----------------------~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~- 205 (357)
T 3i2n_A 151 DPVANMEP-----------------------VQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALRWE- 205 (357)
T ss_dssp SCSEEECC-----------------------CTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEEEE-
T ss_pred Ccceeccc-----------------------cCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCceeee-
Confidence 2 221100 0111244888998 77886 5999999999999999999887544
Q ss_pred cccCCCeEEEEEcC---CCCCEEEEEECCCcEEEEecCCCCCccceE-----eeeCCeeEEEeCCCCCcEEEEEeCCCcE
Q 013827 240 EHHTDKVQAVAWNH---HSPQILLSGSFDRSVVMKDARISTHSGFKW-----AVAADVESLAWDPHAEHSFVVSLEDGTI 311 (436)
Q Consensus 240 ~~~~~~v~~~~~~~---~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~dg~i 311 (436)
..|...|.+++|+| ++ .++++++.||.|++||+++........ .+...+.+++|+|++..++++++.||.|
T Consensus 206 ~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 284 (357)
T 3i2n_A 206 TNIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGL 284 (357)
T ss_dssp EECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred cCCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcE
Confidence 55889999999999 77 899999999999999999877665444 6888999999999885589999999999
Q ss_pred EEEeCCCCCCCCCC----------CCCcccEEEeccCCCeEEEEecCCCCCEEE-EEeCCCcEEEEECCCCC
Q 013827 312 KGFDIRTAKSDPDS----------TSQQSSFTLHAHDKAVCTISYNPLVPNLLA-TGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 312 ~i~d~~~~~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~d~~i~iwd~~~~~ 372 (436)
++||++........ .....+..+..|...|++++|+|++ .+|+ +++.|+.|++||+.+.+
T Consensus 285 ~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 285 HLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDK-RGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSS-TTEEEEEETTSEEEEEEECC--
T ss_pred EEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCC-CeEEEEecCCCcEEEEECCCcc
Confidence 99999876432110 0113567788899999999999999 5555 89999999999998754
No 96
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.6e-33 Score=258.34 Aligned_cols=249 Identities=17% Similarity=0.218 Sum_probs=205.3
Q ss_pred cceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEE
Q 013827 127 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 206 (436)
Q Consensus 127 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 206 (436)
..|++| +|++++||+|+.|+.|++||+.+.+ ......+.+|...|.++
T Consensus 11 i~~~~~-------s~~~~~l~~~~~d~~v~i~~~~~~~-------------------------~~~~~~~~~h~~~v~~~ 58 (372)
T 1k8k_C 11 ISCHAW-------NKDRTQIAICPNNHEVHIYEKSGNK-------------------------WVQVHELKEHNGQVTGV 58 (372)
T ss_dssp CCEEEE-------CTTSSEEEEECSSSEEEEEEEETTE-------------------------EEEEEEEECCSSCEEEE
T ss_pred eEEEEE-------CCCCCEEEEEeCCCEEEEEeCCCCc-------------------------EEeeeeecCCCCcccEE
Confidence 356777 8999999999999999999987543 01223355799999999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEE--cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc----c
Q 013827 207 AWNKEFRNILASASADKQVKIWDVAAGKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS----G 280 (436)
Q Consensus 207 ~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~----~ 280 (436)
+|+|++ .+|++++.||.|++||+.+++....+ ..|...|.+++|+|++ .+|++++.|+.|++||++..... .
T Consensus 59 ~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 136 (372)
T 1k8k_C 59 DWAPDS-NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKH 136 (372)
T ss_dssp EEETTT-TEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEE
T ss_pred EEeCCC-CEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeee
Confidence 999996 59999999999999999888754443 6789999999999999 89999999999999999987642 1
Q ss_pred ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCC---------CCCCcccEEEeccCCCeEEEEecCCCC
Q 013827 281 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD---------STSQQSSFTLHAHDKAVCTISYNPLVP 351 (436)
Q Consensus 281 ~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~p~~~ 351 (436)
....+...+.+++|+|++ .++++++.||.|++||++....... ......+..+..|...|.+++|+|++
T Consensus 137 ~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 214 (372)
T 1k8k_C 137 IKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG- 214 (372)
T ss_dssp ECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-
T ss_pred eecccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC-
Confidence 123467889999999977 6899999999999999764321110 11235567777899999999999998
Q ss_pred CEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 352 NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 352 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
.+|++++.|+.|++||+++++ .+..+..|..+|.+++|+|++. +++++ .|+.|++|++.+
T Consensus 215 ~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 215 SRVAWVSHDSTVCLADADKKM--AVATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp SEEEEEETTTEEEEEEGGGTT--EEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEET
T ss_pred CEEEEEeCCCEEEEEECCCCc--eeEEEccCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccC
Confidence 899999999999999999887 4566678888999999999998 46656 999999999988
No 97
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2e-33 Score=262.18 Aligned_cols=244 Identities=22% Similarity=0.303 Sum_probs=202.0
Q ss_pred CCCCcEE-EEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecC-CCCcEEE
Q 013827 140 REKGNFM-AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK-EFRNILA 217 (436)
Q Consensus 140 s~~~~~l-~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~ 217 (436)
+|+...+ ++++.||.|+||++...... ......+.+|...|++++|+| + ..+|+
T Consensus 43 ~~~~~~~~~~~~~~g~i~v~~~~~~~~~-----------------------~~~~~~~~~h~~~V~~~~~~p~~-~~~l~ 98 (402)
T 2aq5_A 43 NPKFMALICEASGGGAFLVLPLGKTGRV-----------------------DKNVPLVCGHTAPVLDIAWCPHN-DNVIA 98 (402)
T ss_dssp CSSEEEEEBCCSSSCCEEEEETTCCEEC-----------------------CTTCCCBCCCSSCEEEEEECTTC-TTEEE
T ss_pred CCCeEEEEEEEcCCCEEEEEECccCCCC-----------------------CCCCceEecCCCCEEEEEeCCCC-CCEEE
Confidence 6665444 45788999999999643221 122233668999999999999 6 46999
Q ss_pred EEeCCCcEEEEeCCCC-------eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccce--EeeeCC
Q 013827 218 SASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--WAVAAD 288 (436)
Q Consensus 218 s~~~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~~~~~~ 288 (436)
+|+.||.|++||+.++ +.+..+.+|...|.+++|+|++..+|++++.|+.|++||+++.+..... ..|...
T Consensus 99 s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 99 SGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 9999999999999987 6678889999999999999998679999999999999999988776655 568899
Q ss_pred eeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE-eccCCC-eEEEEecCCCCCEEEEE---eCCCcE
Q 013827 289 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKA-VCTISYNPLVPNLLATG---STDKMV 363 (436)
Q Consensus 289 i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~-v~~~~~~p~~~~~l~~~---~~d~~i 363 (436)
+.+++|+|++ .++++++.|+.|++||+++. ..+..+ ..|... +.++.|+|++ .+|++| +.|+.|
T Consensus 179 v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i 247 (402)
T 2aq5_A 179 IYSVDWSRDG-ALICTSCRDKRVRVIEPRKG---------TVVAEKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQV 247 (402)
T ss_dssp EEEEEECTTS-SCEEEEETTSEEEEEETTTT---------EEEEEEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEE
T ss_pred eEEEEECCCC-CEEEEEecCCcEEEEeCCCC---------ceeeeeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceE
Confidence 9999999977 68999999999999999987 556666 678766 8999999998 899998 789999
Q ss_pred EEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 364 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 364 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
++||+++.+.........+...+.+++|+|++++++++++.||.|++||+.+++.
T Consensus 248 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 248 ALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp EEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred EEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 9999998764222333356678999999999996556677899999999998875
No 98
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-33 Score=265.55 Aligned_cols=287 Identities=14% Similarity=0.140 Sum_probs=214.1
Q ss_pred ceeccCCceEEEEEecCCcceeEEEEEecCCCCCCcee-eecccccCcCcceeecccCCCCCCC-CCcEEEEeeCCCcEE
Q 013827 79 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLY-VHHHIIIPAFPLCMAWLDCPLKDRE-KGNFMAVGSMEPAIE 156 (436)
Q Consensus 79 ~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~ 156 (436)
..|+|++..++++.. |+.... ....+ .+| ...+.|++| +| ++++||+|+.||+|+
T Consensus 33 ~~f~~~~~~~~~~~~-----------w~~~g~-~~~~~~~~h----~~~V~~~~~-------s~~~~~~l~s~s~dg~v~ 89 (437)
T 3gre_A 33 KEFGPIQEIVRSPNM-----------GNLRGK-LIATLMENE----PNSITSSAV-------SPGETPYLITGSDQGVIK 89 (437)
T ss_dssp GGGCCCCCCCCCCCG-----------GGCCCC-EEEEECTTT----TSCEEEEEE-------ECSSSCEEEEEETTSEEE
T ss_pred hhcCCcccccccccc-----------ccccce-EEeeeccCC----CCceEEEEE-------CCCCCCEEEEecCCceEE
Confidence 467888888877631 332221 00111 222 234467777 88 999999999999999
Q ss_pred EEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCC---CC
Q 013827 157 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA---AG 233 (436)
Q Consensus 157 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~---~~ 233 (436)
|||+.+.+... .......+ +|...|++++|+|++ .+|++|+.||.|++||++ ++
T Consensus 90 vwd~~~~~~~~---------------------~~~~~~~~-~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~ 146 (437)
T 3gre_A 90 IWNLKEIIVGE---------------------VYSSSLTY-DCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQE 146 (437)
T ss_dssp EEEHHHHHTTC---------------------CCSCSEEE-ECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEET
T ss_pred EeECcccccCc---------------------ccceeeec-cCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCC
Confidence 99986511110 00011111 589999999999986 699999999999999995 45
Q ss_pred eEEEEEcc------------cCCCeEEEE--EcCCCCCEEEEEECCCcEEEEecCCCCCccceEe--eeCCeeEEEeCCC
Q 013827 234 KCNLTLEH------------HTDKVQAVA--WNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--VAADVESLAWDPH 297 (436)
Q Consensus 234 ~~~~~~~~------------~~~~v~~~~--~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~i~~~~~~~~ 297 (436)
+....+.. +...+.++. +++++ .++++++.|+.|++||+++.+....... |...|++++|+|+
T Consensus 147 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~ 225 (437)
T 3gre_A 147 SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE 225 (437)
T ss_dssp TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTT
T ss_pred ceeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCC
Confidence 44433322 445666666 55777 8999999999999999999887776665 7889999999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEe-ccCCCeEEEEecC----CCCCEEEEEeCCCcEEEEECCCCC
Q 013827 298 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCTISYNP----LVPNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 298 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p----~~~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
+ .++++|+.||.|++||+++. .++..+. .|...|.+++|+| ++ .+|++|+.|+.|++||+++++
T Consensus 226 ~-~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~ 294 (437)
T 3gre_A 226 C-CVLILGTTRGIIDIWDIRFN---------VLIRSWSFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGH 294 (437)
T ss_dssp S-CEEEEEETTSCEEEEETTTT---------EEEEEEBCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTE
T ss_pred C-CEEEEEcCCCeEEEEEcCCc---------cEEEEEecCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCc
Confidence 6 68999999999999999986 5566665 7888999996665 45 699999999999999999876
Q ss_pred ceeEEe----------------------eCC--CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccC
Q 013827 373 PSCIAS----------------------RNP--KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 425 (436)
Q Consensus 373 ~~~~~~----------------------~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (436)
...... +.+ |...|++++|+ +++ +|++++.||.|++||+.+++.+.....+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 369 (437)
T 3gre_A 295 CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATSSIVMFSLNELSSSKAVISP 369 (437)
T ss_dssp EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGTEEEEEETTCGGGCEEEECC
T ss_pred EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCCeEEEEECCCcccceEEecc
Confidence 432222 111 56678999999 666 5999999999999999999888766543
No 99
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=7.7e-33 Score=249.52 Aligned_cols=279 Identities=18% Similarity=0.258 Sum_probs=217.8
Q ss_pred hcccceeeec---cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEEecCCc
Q 013827 21 HSCFRCHKIS---NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDV 97 (436)
Q Consensus 21 ~~~~~~~~~~---~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~ 97 (436)
.+..|+++.- +.|+|++|||++..+... ......|...|.+++|+|++++|++|+.++
T Consensus 29 ~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~-----------------~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg-- 89 (318)
T 4ggc_A 29 NLVDWSSGNVLAVALDNSVYLWSASSGDILQ-----------------LLQMEQPGEYISSVAWIKEGNYLAVGTSSA-- 89 (318)
T ss_dssp BCEEECTTSEEEEEETTEEEEEETTTCCEEE-----------------EEECCSTTCCEEEEEECTTSSEEEEEETTS--
T ss_pred eEEEECCCCEEEEEeCCEEEEEECCCCCEEE-----------------EEEecCCCCeEEEEEECCCCCEEEEEECCC--
Confidence 3567876422 679999999987665431 112246778899999999999999999887
Q ss_pred ceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccch
Q 013827 98 SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDE 177 (436)
Q Consensus 98 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 177 (436)
.|.+|+...++....+..|... ..++ ++++.+|++|+.++.+++|+.......
T Consensus 90 ---~v~iw~~~~~~~~~~~~~h~~~----~~~~---------~~~~~~l~s~~~~~~~~~~~~~~~~~~----------- 142 (318)
T 4ggc_A 90 ---EVQLWDVQQQKRLRNMTSHSAR----VGSL---------SWNSYILSSGSRSGHIHHHDVRVAEHH----------- 142 (318)
T ss_dssp ---EEEEEETTTTEEEEEEECCSSC----EEEE---------EEETTEEEEEETTSEEEEEETTSSSCE-----------
T ss_pred ---cEEEeecCCceeEEEecCccce----EEEe---------ecCCCEEEEEecCCceEeeecCCCcee-----------
Confidence 7888888776333333333221 1222 457889999999999999998753322
Q ss_pred hhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCe----EEEEEcccCCCeEEEEEcC
Q 013827 178 EKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK----CNLTLEHHTDKVQAVAWNH 253 (436)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~----~~~~~~~~~~~v~~~~~~~ 253 (436)
...+.+|...+..+.+++++ .+|++++.|+.|++||+.+++ .......+...|.++.++|
T Consensus 143 ---------------~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 206 (318)
T 4ggc_A 143 ---------------VATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 206 (318)
T ss_dssp ---------------EEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECT
T ss_pred ---------------EEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecC
Confidence 22355799999999999997 599999999999999998764 2455567888999999999
Q ss_pred CCCCEEE--EEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEE-EeCCCcEEEEeCCCCCCCCCCCCCcc
Q 013827 254 HSPQILL--SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV-SLEDGTIKGFDIRTAKSDPDSTSQQS 330 (436)
Q Consensus 254 ~~~~~l~--s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~dg~i~i~d~~~~~~~~~~~~~~~ 330 (436)
.+...+. +++.++.|++||.+...... ...+...+..+.|+|.+..++++ |+.|+.|++||++++ ++
T Consensus 207 ~~~~~~~~~~~~~~~~i~lwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~---------~~ 276 (318)
T 4ggc_A 207 WQSNVLATGGGTSDRHIRIWNVCSGACLS-AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---------AK 276 (318)
T ss_dssp TSTTEEEEEECTTTCEEEEEETTTCCEEE-EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---------CE
T ss_pred CCCcEEEEEecCCCCEEEEEecccccccc-cccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC---------cE
Confidence 8866554 55678999999998776554 45677889999999988654443 347999999999987 67
Q ss_pred cEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 013827 331 SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 331 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
+..+.+|...|++++|+|++ .+|++|+.|++|+|||+.+..
T Consensus 277 ~~~l~gH~~~V~~l~~spdg-~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 277 VAELKGHTSRVLSLTMSPDG-ATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEECCCSSCEEEEEECTTS-SCEEEEETTTEEEEECCSCCC
T ss_pred EEEEcCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEECCCCC
Confidence 88999999999999999998 899999999999999997654
No 100
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.5e-32 Score=250.50 Aligned_cols=271 Identities=13% Similarity=0.222 Sum_probs=205.7
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCC--CCcEEE
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE--KGNFMA 147 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~ 147 (436)
.+|.+.|.+++|+|++++|++++.++ .|.+|+.............-......+.|++| +| ++++|+
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~d~~~l~ 75 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQ-----HIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW-------ASPEYGRIIA 75 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTS-----EEEEEEECSSSCCEEEEEEEECCSSCEEEEEE-------CCGGGCSEEE
T ss_pred cccccceeEEEEcCCCCEEEEeeCCC-----eEEEEECCCCCCcceecceeccCCCcEEEEEE-------cCCCCCCEEE
Confidence 47899999999999999999998886 66666665432111111111112334567877 67 699999
Q ss_pred EeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCC--CCcEEEEEeCCCcE
Q 013827 148 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE--FRNILASASADKQV 225 (436)
Q Consensus 148 ~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~~~dg~v 225 (436)
+|+.||.|++||+.+++.... .........+.+|...|.+++|+|+ + .+|++++.||.|
T Consensus 76 s~~~dg~v~vwd~~~~~~~~~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v 136 (351)
T 3f3f_A 76 SASYDKTVKLWEEDPDQEECS------------------GRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGIL 136 (351)
T ss_dssp EEETTSCEEEEEECTTSCTTS------------------SCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEE
T ss_pred EEcCCCeEEEEecCCCccccc------------------ccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcE
Confidence 999999999999986543211 0112334446689999999999998 6 599999999999
Q ss_pred EEEeCCCCeEEEEEc-------------ccCCCeEEEEEcCC---CCCEEEEEECCCcEEEEecCCCCC--ccceEeeeC
Q 013827 226 KIWDVAAGKCNLTLE-------------HHTDKVQAVAWNHH---SPQILLSGSFDRSVVMKDARISTH--SGFKWAVAA 287 (436)
Q Consensus 226 ~vwd~~~~~~~~~~~-------------~~~~~v~~~~~~~~---~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~ 287 (436)
++||+.+++.+..+. .|...+.+++|+|+ + ..+++++.++.+.+|+...... ......|..
T Consensus 137 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 215 (351)
T 3f3f_A 137 RLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKS 215 (351)
T ss_dssp EEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTTSCEEEEEECCCCCS
T ss_pred EEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCCCceeeeeecCCCCc
Confidence 999998775433221 57889999999997 5 8999999999998888776654 333446788
Q ss_pred CeeEEEeCCCCC---cEEEEEeCCCcEEEEeCCCCCCCCC-------------------------------------CCC
Q 013827 288 DVESLAWDPHAE---HSFVVSLEDGTIKGFDIRTAKSDPD-------------------------------------STS 327 (436)
Q Consensus 288 ~i~~~~~~~~~~---~~~~~~~~dg~i~i~d~~~~~~~~~-------------------------------------~~~ 327 (436)
.|.+++|+|++. .++++++.||.|++||++....... ...
T Consensus 216 ~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (351)
T 3f3f_A 216 LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ 295 (351)
T ss_dssp CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEE
T ss_pred ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccc
Confidence 999999999873 6899999999999999987522110 001
Q ss_pred CcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc
Q 013827 328 QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 373 (436)
Q Consensus 328 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~ 373 (436)
...+..+.+|...|++++|+|++ .+|++++.||.|++||+.+++.
T Consensus 296 ~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 296 VELLSEHDDHNGEVWSVSWNLTG-TILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp EEEEEEECTTSSCEEEEEECSSS-CCEEEEETTSCEEEEEECTTSC
T ss_pred ccEEEEEecccccEEEEEEcCCC-CEEEEecCCCcEEEEecCcCcc
Confidence 14566678899999999999998 8999999999999999998753
No 101
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-32 Score=256.36 Aligned_cols=240 Identities=11% Similarity=0.045 Sum_probs=190.8
Q ss_pred cceeecccCCCCCCCCCcEE-EEeeCCCcEEEEeCC--CCCCCcceeeecccchhhhhhcccCCCcccccccccCcccce
Q 013827 127 PLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIWDLD--VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV 203 (436)
Q Consensus 127 ~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 203 (436)
+.|++| +|++++| ++|+.||.|+|||+. +++...... ...|...|
T Consensus 105 v~~~~~-------s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-------------------------~~~~~~~v 152 (450)
T 2vdu_B 105 IRNLRL-------TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-------------------------RFCFSKRP 152 (450)
T ss_dssp EEEEEE-------CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-------------------------EEECSSCE
T ss_pred eEEEEE-------cCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-------------------------cccCCCCc
Confidence 456666 8999996 899999999999998 544433211 11467889
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEE----EEcccCCCeEEEEEcCC---CCCEEEEEECCCcEEEEecCCC
Q 013827 204 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNL----TLEHHTDKVQAVAWNHH---SPQILLSGSFDRSVVMKDARIS 276 (436)
Q Consensus 204 ~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~~l~s~~~d~~i~~wd~~~~ 276 (436)
.+++|+|++ .+|++|+.||.|++|++.+++... .+.+|...|.+++|+|+ + .+|++++.|+.|++||+++.
T Consensus 153 ~~~~~sp~~-~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 153 NAISIAEDD-TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp EEEEECTTS-SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCT
T ss_pred eEEEEcCCC-CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCC
Confidence 999999997 599999999999999998876543 67789999999999999 7 89999999999999999988
Q ss_pred CCccc-eEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEe--------------------
Q 013827 277 THSGF-KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-------------------- 335 (436)
Q Consensus 277 ~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------------------- 335 (436)
..... ...|...|.+++|+ ++ .++++++.|+.|++||++++ +.+..+.
T Consensus 231 ~~~~~~~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (450)
T 2vdu_B 231 FIVDKWLFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTG---------KNLSTFDYNSLIKPYLNDQHLAPPRFQ 299 (450)
T ss_dssp TCEEEECCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTC---------CEEEEEECHHHHGGGCCTTSBC-----
T ss_pred ceeeeeecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCC---------cEeeeecchhhhhhhhhhccccccccc
Confidence 76654 34788999999999 66 68999999999999999987 3344443
Q ss_pred -----ccCCCeEEEEecCCCCCEEEEEe-CCCcEEEEEC--CCC-CceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeC--
Q 013827 336 -----AHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDL--SNN-QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS-- 404 (436)
Q Consensus 336 -----~~~~~v~~~~~~p~~~~~l~~~~-~d~~i~iwd~--~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-- 404 (436)
.....+..++|+|++ .+|++++ .|+.|++|++ ... ....+..+..+ +.|.+++|+|++ ++++.+.
T Consensus 300 ~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~--~~v~~~~~~ 375 (450)
T 2vdu_B 300 NENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE--FQVTLDNKE 375 (450)
T ss_dssp -----CBCCCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE--EEEEECCTT
T ss_pred ccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc--EEEEEeccc
Confidence 234578999999998 8888888 8999999999 443 22345556666 789999999964 3444433
Q ss_pred -----CCcEEEEeCCC
Q 013827 405 -----KGKLEIWDTLS 415 (436)
Q Consensus 405 -----dg~i~iwd~~~ 415 (436)
+..|.+|.+..
T Consensus 376 ~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 376 SSGVQKNFAKFIEYNL 391 (450)
T ss_dssp CCSSCCCSEEEEEEET
T ss_pred CCCCCCcceEEEEEEc
Confidence 45688887754
No 102
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.1e-32 Score=249.32 Aligned_cols=249 Identities=12% Similarity=0.151 Sum_probs=205.2
Q ss_pred CcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeE
Q 013827 126 FPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG 205 (436)
Q Consensus 126 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 205 (436)
.+.|++| +|++++|++|+.||.|+||++.+.+.... ...+.+|...|.+
T Consensus 13 ~v~~~~~-------s~~~~~l~~~~~d~~v~iw~~~~~~~~~~------------------------~~~~~~~~~~v~~ 61 (342)
T 1yfq_A 13 YISDIKI-------IPSKSLLLITSWDGSLTVYKFDIQAKNVD------------------------LLQSLRYKHPLLC 61 (342)
T ss_dssp CEEEEEE-------EGGGTEEEEEETTSEEEEEEEETTTTEEE------------------------EEEEEECSSCEEE
T ss_pred cEEEEEE-------cCCCCEEEEEcCCCeEEEEEeCCCCcccc------------------------ceeeeecCCceEE
Confidence 3457777 88999999999999999999976442111 1113379999999
Q ss_pred EEecCCCCc-EEEEEeCCCcEEEEeC-CCCeEEEEEcc--cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC------
Q 013827 206 LAWNKEFRN-ILASASADKQVKIWDV-AAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI------ 275 (436)
Q Consensus 206 ~~~~~~~~~-~l~s~~~dg~v~vwd~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~------ 275 (436)
++|+|++ . +|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| + .++++++.|+.|++||+++
T Consensus 62 ~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~ 137 (342)
T 1yfq_A 62 CNFIDNT-DLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVI 137 (342)
T ss_dssp EEEEESS-SEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCE
T ss_pred EEECCCC-CcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccc
Confidence 9999995 7 8999999999999999 87764 67788 999999999999 6 8999999999999999987
Q ss_pred ---CCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCC-CCCCCCCCCCcccEEEeccCCCeEEEEecC-CC
Q 013827 276 ---STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT-AKSDPDSTSQQSSFTLHAHDKAVCTISYNP-LV 350 (436)
Q Consensus 276 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~ 350 (436)
.+..... .+...+.+++|+|++ +++++.++.|++||++. ... ........|...+.+++|+| ++
T Consensus 138 ~~~~~~~~~~-~~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~i~~i~~~~~~~ 206 (342)
T 1yfq_A 138 AVKNLNSNNT-KVKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDD-------NGTIEESGLKYQIRDVALLPKEQ 206 (342)
T ss_dssp EEEESCSSSS-SSCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTC-------CCEEEECSCSSCEEEEEECSGGG
T ss_pred cccCCeeeEE-eeCCceEEEEecCCc---EEEEeCCCeEEEEECCccccc-------cceeeecCCCCceeEEEECCCCC
Confidence 5544433 378899999999854 99999999999999998 521 23445567888999999999 88
Q ss_pred CCEEEEEeCCCcEEEEECCCC------CceeEEeeCCCC---------CcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 351 PNLLATGSTDKMVKLWDLSNN------QPSCIASRNPKA---------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 351 ~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
.++++++.||.|++|+++.. + ....+..|. ..|.+++|+|++++ |++++.||.|++||+.+
T Consensus 207 -~~l~~~~~dg~i~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 207 -EGYACSSIDGRVAVEFFDDQGDDYNSS--KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAGSDGIISCWNLQT 282 (342)
T ss_dssp -CEEEEEETTSEEEEEECCTTCCSTTCT--TCEEEECCCCCTTCCSSCCCEEEEEECTTTCC-EEEEETTSCEEEEETTT
T ss_pred -CEEEEEecCCcEEEEEEcCCCcccccc--cceeeecccccccccccceeEEEEEEcCCCCE-EEEecCCceEEEEcCcc
Confidence 89999999999999999876 4 333445554 49999999999995 88999999999999999
Q ss_pred Ccccccccc
Q 013827 416 DAGISNRFS 424 (436)
Q Consensus 416 ~~~~~~~~~ 424 (436)
++.+.....
T Consensus 283 ~~~~~~~~~ 291 (342)
T 1yfq_A 283 RKKIKNFAK 291 (342)
T ss_dssp TEEEEECCC
T ss_pred HhHhhhhhc
Confidence 988766443
No 103
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=6.9e-33 Score=257.36 Aligned_cols=248 Identities=10% Similarity=0.121 Sum_probs=178.2
Q ss_pred CCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecC--------
Q 013827 139 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK-------- 210 (436)
Q Consensus 139 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------- 210 (436)
+++++.+||+|+.|++|+|||+.+++... ......+.+|.+.|++++|+|
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~----------------------~~~~~~~~gH~~~v~~v~~~p~~~~~~~~ 154 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIIT----------------------QHVLGGKSGHHNFVNDIDIADVYSADNRL 154 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEE----------------------EEEECTTTSCSSCEEEEEEEEEECTTCSE
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccce----------------------eeeecccCCCCCceEEEEEccccccccCC
Confidence 36778899999999999999987654322 123334779999999999998
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccce--------
Q 013827 211 EFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-------- 282 (436)
Q Consensus 211 ~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-------- 282 (436)
++ ++||+|+.|++|+|||+.++..+..+..|..+|.+++|+|++..+|++++.|++|++||+++.......
T Consensus 155 d~-~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~ 233 (393)
T 4gq1_A 155 AE-QVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN 233 (393)
T ss_dssp EE-EEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC
T ss_pred CC-CEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc
Confidence 54 699999999999999999888888888899999999999998668999999999999999876542211
Q ss_pred -----------------EeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCC----------CCcccEEEe
Q 013827 283 -----------------WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST----------SQQSSFTLH 335 (436)
Q Consensus 283 -----------------~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~----------~~~~~~~~~ 335 (436)
..+...+.++.|.+.....+++++.|+.+++||+.......... .........
T Consensus 234 ~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 313 (393)
T 4gq1_A 234 PWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGIS 313 (393)
T ss_dssp CCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEEC
T ss_pred ceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccc
Confidence 23456788898874334789999999999999998763211100 000111112
Q ss_pred ccCCCeEEEEecC-CCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 336 AHDKAVCTISYNP-LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 336 ~~~~~v~~~~~~p-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
.+...+. ..|+| .+..++++|+.||.|++||+.+++. ......|..+|.+++|+|||+ +||+++.+| +.+|.+.
T Consensus 314 ~~~~~~~-~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~--~~~~~~~~~~V~svafspdG~-~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 314 LFPSLLG-ACPHPRYMDYFATAHSQHGLIQLINTYEKDS--NSIPIQLGMPIVDFCWHQDGS-HLAIATEGS-VLLTRLM 388 (393)
T ss_dssp SSCCSSC-CEECSSCTTEEEEEETTTTEEEEEETTCTTC--CEEEEECSSCEEEEEECTTSS-EEEEEESSE-EEEEEEG
T ss_pred ccCccee-EEEccCCCCEEEEEECCCCEEEEEECCCCcE--EEEecCCCCcEEEEEEcCCCC-EEEEEeCCC-eEEEEEe
Confidence 2222222 33343 3334677788899999999998874 334456777999999999999 488887665 6666654
No 104
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=3.5e-32 Score=255.89 Aligned_cols=266 Identities=20% Similarity=0.346 Sum_probs=207.2
Q ss_pred CCCccccccceeccC-CceEEEEEecCCcceeEEEEEecCC----------CCCCceeeecccccCcCcceeecccCCCC
Q 013827 70 DEDSEDLEDMTINPN-DAVIVCARNEDDVSHLEVYILEESD----------GGDPNLYVHHHIIIPAFPLCMAWLDCPLK 138 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~-~~~l~~~~~~~~~~~~~v~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
..|.+.|.+++|+|+ +.+|++++.++ .|.+|+... ......+..|.. .+.+++|
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg-----~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~----~v~~l~~------ 189 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSS-----DVLVFDYTKHPSKPEPSGECQPDLRLRGHQK----EGYGLSW------ 189 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSS-----CEEEEEGGGSCSSCCTTCCCCCSEEEECCSS----CCCCEEE------
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCC-----cEEEEECCCcccccCccccCCCcEEecCCCC----CeEEEEe------
Confidence 467889999999998 67888887776 566665543 222222333332 3456777
Q ss_pred CCCCCc-EEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEE
Q 013827 139 DREKGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 217 (436)
Q Consensus 139 ~s~~~~-~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 217 (436)
+|++. +|++|+.||.|++|++........ .......+.+|...|.+++|+|++..+|+
T Consensus 190 -~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------------------~~~~~~~~~~h~~~v~~v~~~p~~~~~l~ 248 (430)
T 2xyi_A 190 -NPNLNGYLLSASDDHTICLWDINATPKEHR--------------------VIDAKNIFTGHTAVVEDVAWHLLHESLFG 248 (430)
T ss_dssp -CTTSTTEEEEECTTSCEEEEETTSCCBGGG--------------------EEECSEEECCCSSCEEEEEECSSCTTEEE
T ss_pred -CCCCCCeEEEEeCCCeEEEEeCCCCCCCCc--------------------eeccceeecCCCCCEeeeEEeCCCCCEEE
Confidence 88888 999999999999999986432211 01123345589999999999996567999
Q ss_pred EEeCCCcEEEEeCCCC---eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC-CccceEeeeCCeeEEE
Q 013827 218 SASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST-HSGFKWAVAADVESLA 293 (436)
Q Consensus 218 s~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~i~~~~ 293 (436)
+++.||.|++||++++ +.+..+..|...|++++|+|++..++++|+.||.|++||++... .......|...+.+++
T Consensus 249 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~ 328 (430)
T 2xyi_A 249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ 328 (430)
T ss_dssp EEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEE
T ss_pred EEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEE
Confidence 9999999999999987 56778888999999999999996689999999999999999854 4444556889999999
Q ss_pred eCCCCCcEEEEEeCCCcEEEEeCCCCCCCCC-----CCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 013827 294 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD-----STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 368 (436)
Q Consensus 294 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~ 368 (436)
|+|++..++++++.|+.|++||+........ ......+....+|...|.+++|+|+++.+|++++.||.|++|++
T Consensus 329 ~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 329 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp ECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred ECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 9999888899999999999999987421110 00114566777899999999999999559999999999999998
Q ss_pred CCC
Q 013827 369 SNN 371 (436)
Q Consensus 369 ~~~ 371 (436)
...
T Consensus 409 ~~~ 411 (430)
T 2xyi_A 409 AEN 411 (430)
T ss_dssp CHH
T ss_pred ccc
Confidence 753
No 105
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=8.2e-33 Score=254.29 Aligned_cols=260 Identities=15% Similarity=0.194 Sum_probs=207.1
Q ss_pred CcceeecccCCCCCCC----CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCccc
Q 013827 126 FPLCMAWLDCPLKDRE----KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD 201 (436)
Q Consensus 126 ~~~~~~~~~~~~~~s~----~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 201 (436)
.+.|++| +| ....+++++.++.|++|++.+++........ ....|..
T Consensus 20 ~v~~i~~-------~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~----------------------~~~~~~~ 70 (366)
T 3k26_A 20 PLFGVQF-------NWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSY----------------------VDADADE 70 (366)
T ss_dssp CEEEEEE-------CTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEE----------------------ECSCTTC
T ss_pred ceEEEEE-------ecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeec----------------------cccCCCC
Confidence 3457777 55 2455666666789999999866554332111 1123778
Q ss_pred ceeEEEecCCCC---cEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcC-CCCCEEEEEECCCcEEEEecCCCC
Q 013827 202 SVLGLAWNKEFR---NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH-HSPQILLSGSFDRSVVMKDARIST 277 (436)
Q Consensus 202 ~v~~~~~~~~~~---~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~ 277 (436)
.|++++|+|++. .+|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++ .+|++++.||.|++||+++.+
T Consensus 71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~ 149 (366)
T 3k26_A 71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDT 149 (366)
T ss_dssp CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTE
T ss_pred cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCe
Confidence 899999999832 4899999999999999999999999999999999999999 66 899999999999999999887
Q ss_pred Cccce---EeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCC-------------------CCCCcccEEEe
Q 013827 278 HSGFK---WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD-------------------STSQQSSFTLH 335 (436)
Q Consensus 278 ~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-------------------~~~~~~~~~~~ 335 (436)
..... ..+...+.+++|+|++ .++++++.||.|++||+++.+.... ...........
T Consensus 150 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 150 LVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp EEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred EEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence 66544 4688999999999977 6899999999999999987521000 00001122334
Q ss_pred ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc------------eeEEeeCCCCCcEEEEEEcCC--CCcEEEE
Q 013827 336 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP------------SCIASRNPKAGAVFSVAFSED--SPFVLAI 401 (436)
Q Consensus 336 ~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~------------~~~~~~~~~~~~v~~~~~~~~--~~~~l~s 401 (436)
.|...|.+++|+ + .+|++++.|+.|++||+++.+. ..+..+..|...|++++|+|+ ++ +|++
T Consensus 229 ~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~~ 304 (366)
T 3k26_A 229 IHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLAL 304 (366)
T ss_dssp SCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EEEE
T ss_pred CCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EEEE
Confidence 489999999999 4 7999999999999999987643 346677788889999999999 88 5999
Q ss_pred EeCCCcEEEEeCCCCcccc
Q 013827 402 GGSKGKLEIWDTLSDAGIS 420 (436)
Q Consensus 402 ~~~dg~i~iwd~~~~~~~~ 420 (436)
++.||.|++||+.+++.+.
T Consensus 305 ~~~dg~i~vwd~~~~~~~~ 323 (366)
T 3k26_A 305 GNQVGKLYVWDLEVEDPHK 323 (366)
T ss_dssp ECTTSCEEEEECCSSSGGG
T ss_pred EecCCcEEEEECCCCCCcc
Confidence 9999999999999987655
No 106
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.9e-33 Score=257.08 Aligned_cols=291 Identities=12% Similarity=0.150 Sum_probs=199.9
Q ss_pred hhcccceeeec------------cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCce
Q 013827 20 YHSCFRCHKIS------------NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAV 87 (436)
Q Consensus 20 ~~~~~~~~~~~------------~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 87 (436)
++|+.|+|+.. +.+|++++|+++......... + ..........|++.|.++ +|++..
T Consensus 17 V~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~---~------~~~~~~~l~~~~~~v~s~--~~~~~~ 85 (365)
T 4h5i_A 17 AYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQ---F------HILSEFALEDNDDSPTAI--DASKGI 85 (365)
T ss_dssp EEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHH---E------EEEEEEECCTTSCCCCEE--EEETTE
T ss_pred EEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeee---e------eeeeEEEccCCCCceEEE--EeCCCE
Confidence 56888888776 126679999886433211000 0 000001112445566555 566777
Q ss_pred EEEEEecCC--------cceeEEEEEecCCCCCCceeeeccc----ccCcCcceeecccCCCCCCCCCcEEEEe--eCCC
Q 013827 88 IVCARNEDD--------VSHLEVYILEESDGGDPNLYVHHHI----IIPAFPLCMAWLDCPLKDREKGNFMAVG--SMEP 153 (436)
Q Consensus 88 l~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~l~~g--~~dg 153 (436)
+++|..++. ...+++|.++...... ........ ....++.+++| ||||++||++ +.|+
T Consensus 86 ~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~f-------SpDg~~la~as~~~d~ 157 (365)
T 4h5i_A 86 ILVGCNENSTKITQGKGNKHLRKFKYDKVNDQL-EFLTSVDFDASTNADDYTKLVYI-------SREGTVAAIASSKVPA 157 (365)
T ss_dssp EEEECCCCHHHHHHTSCCCCEEEEEEETTTTEE-EEEEEECSSCCCCTTCCEEEEEE-------CTTSSCEEEEESCSSC
T ss_pred EEEEECCCccEEEEecCCCcEEEEEecCCCceE-EEeeeeceeecCCcccCEEEEEE-------cCCCCEEEEEECCCCC
Confidence 877754321 1234566555443310 01111100 01112334444 9999998754 4789
Q ss_pred cEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 154 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG 233 (436)
Q Consensus 154 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~ 233 (436)
+|+|||+.+++.... + .|...|.+++|+|+| .+|++++.+ .+++|+..++
T Consensus 158 ~i~iwd~~~~~~~~~---------------------------~-~~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~ 207 (365)
T 4h5i_A 158 IMRIIDPSDLTEKFE---------------------------I-ETRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTG 207 (365)
T ss_dssp EEEEEETTTTEEEEE---------------------------E-ECSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTC
T ss_pred EEEEeECCCCcEEEE---------------------------e-CCCCceEEEEEccCC-ceEEeccce-eEEEEEeccC
Confidence 999999987554332 2 477889999999997 588888855 5666766666
Q ss_pred eEEEE--EcccCCCeEEEEEcCCCCCEEEEEECCC----cEEEEecCCCCCc----cceEeeeCCeeEEEeCCCCCcEEE
Q 013827 234 KCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFDR----SVVMKDARISTHS----GFKWAVAADVESLAWDPHAEHSFV 303 (436)
Q Consensus 234 ~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d~----~i~~wd~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~ 303 (436)
+.+.. ...|...|.+++|+|++ ..+++++.|+ .+++|++...... .....+...|++++|+|++ .+|+
T Consensus 208 ~~~~~~~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg-~~la 285 (365)
T 4h5i_A 208 SCIARKTDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG-ELAV 285 (365)
T ss_dssp CEEEEECCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS-CEEE
T ss_pred cceeeeecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC-CceE
Confidence 65443 35688899999999999 8899998887 6888988765432 2234567789999999988 6999
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCcccEEE-eccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 013827 304 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 371 (436)
Q Consensus 304 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~ 371 (436)
+|+.|++|+|||++++ +++..+ .+|...|++++|+|++ .+|++|+.|++|+|||+...
T Consensus 286 sgs~D~~V~iwd~~~~---------~~~~~~~~gH~~~V~~v~fSpdg-~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 286 LASNDNSIALVKLKDL---------SMSKIFKQAHSFAITEVTISPDS-TYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEETTSCEEEEETTTT---------EEEEEETTSSSSCEEEEEECTTS-CEEEEEETTSEEEEEECCTT
T ss_pred EEcCCCEEEEEECCCC---------cEEEEecCcccCCEEEEEECCCC-CEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999987 556664 7899999999999999 99999999999999999754
No 107
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=6.9e-32 Score=247.07 Aligned_cols=283 Identities=12% Similarity=0.127 Sum_probs=204.0
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEE-EE
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM-AV 148 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~ 148 (436)
..|.+.|.+++|+|||++|++|..++ +.+|+.... ....... ... ..++.+ .++++++ ++
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~------~~iw~~~~~---~~~~~~~--~~~-~~~~~~-------~~~~~~~~~~ 76 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS------FEIYNVHPV---AHIMSQE--MRH-LSKVRM-------LHRTNYVAFV 76 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE------EEEEEETTE---EEEEEEE--CSC-CCEEEE-------CTTSSEEEEE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE------EEEEecCCc---ceeeeee--cCC-eEEEEE-------cCCCCEEEEE
Confidence 46789999999999999999887552 345554433 1111111 111 223444 5566666 56
Q ss_pred eeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEE
Q 013827 149 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 228 (436)
Q Consensus 149 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vw 228 (436)
|+.|++|+|||+.+++.+.. + .|...|.+++|+++ .++++ .|+.|++|
T Consensus 77 ~~~d~~v~iWd~~~~~~~~~---------------------------~-~~~~~v~~v~~~~~---~~~~~-~~~~i~i~ 124 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQDVSR---------------------------I-KVDAPVKDLFLSRE---FIVVS-YGDVISVF 124 (355)
T ss_dssp CSSTTEEEEEETTTTEEEEE---------------------------E-ECSSCEEEEEECSS---EEEEE-ETTEEEEE
T ss_pred ECCccEEEEEECCCCcEEEE---------------------------E-ECCCceEEEEEcCC---EEEEE-EcCEEEEE
Confidence 78889999999987654432 2 25678999999987 34444 37899999
Q ss_pred eCCCC-eEEEEEcccCCCeEEEEEcCCCCCEEEE--EECCCcEEEEecCCCC----------------CccceEeeeCCe
Q 013827 229 DVAAG-KCNLTLEHHTDKVQAVAWNHHSPQILLS--GSFDRSVVMKDARIST----------------HSGFKWAVAADV 289 (436)
Q Consensus 229 d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s--~~~d~~i~~wd~~~~~----------------~~~~~~~~~~~i 289 (436)
|+.++ +.+..+.. +...+++++ .+++. |+.||.|++||+++.. .......|...|
T Consensus 125 d~~~~~~~~~~~~~---~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v 198 (355)
T 3vu4_A 125 KFGNPWKRITDDIR---FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPI 198 (355)
T ss_dssp ESSTTCCBSSCCEE---EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCE
T ss_pred ECCCCceeeEEecc---CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCce
Confidence 99988 66555543 445566666 34444 6899999999998765 144456789999
Q ss_pred eEEEeCCCCCcEEEEEeCCCc-EEEEeCCCCCCCCCCCCCcccEEEe-c-cCCCeEEEEecCCCCCEEEEEeCCCcEEEE
Q 013827 290 ESLAWDPHAEHSFVVSLEDGT-IKGFDIRTAKSDPDSTSQQSSFTLH-A-HDKAVCTISYNPLVPNLLATGSTDKMVKLW 366 (436)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~p~~~~~l~~~~~d~~i~iw 366 (436)
.+++|+|++ .++++++.|++ |++||++++ +.+..+. + |...|.+++|+|++ .+|++++.|++|++|
T Consensus 199 ~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~---------~~~~~~~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw 267 (355)
T 3vu4_A 199 KMVRLNRKS-DMVATCSQDGTIIRVFKTEDG---------VLVREFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVF 267 (355)
T ss_dssp EEEEECTTS-SEEEEEETTCSEEEEEETTTC---------CEEEEEECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEE
T ss_pred EEEEECCCC-CEEEEEeCCCCEEEEEECCCC---------cEEEEEEcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEE
Confidence 999999987 69999999998 999999987 6677777 5 99999999999998 899999999999999
Q ss_pred ECCCCCceeEEe--------------------eC-CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 367 DLSNNQPSCIAS--------------------RN-PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 367 d~~~~~~~~~~~--------------------~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
|++......... +. ........++|++++. .+++++.||.+++|++..++....
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~-~l~~~~~dg~~~~~~~~~~~~~~~ 342 (355)
T 3vu4_A 268 EIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS-LVVVWPHTRMIETFKVVFDDEMER 342 (355)
T ss_dssp ESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE-EEEEETTTTEEEEEEEEEETTTTE
T ss_pred EccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCC-EEEEEeCCCeEEEEEEEcCCCCce
Confidence 997653211111 11 1122346789999998 488899999999999987665443
No 108
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-32 Score=242.05 Aligned_cols=275 Identities=15% Similarity=0.165 Sum_probs=217.0
Q ss_pred HHHhhcccceeeec-----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEE
Q 013827 17 LRLYHSCFRCHKIS-----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCA 91 (436)
Q Consensus 17 ~~~~~~~~~~~~~~-----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 91 (436)
...+.++.| ++.+ +.|+++++|++........ ...|...|.+++|+|++++|+++
T Consensus 18 ~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~~~~~~~~l~~~ 77 (313)
T 3odt_A 18 DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVCYDSEKELLLFG 77 (313)
T ss_dssp SSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEEEETTTTEEEEE
T ss_pred CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEEECCCCCEEEEe
Confidence 344666677 6655 8899999999866544211 11456789999999999999999
Q ss_pred EecCCcceeEEEEEecCCCC---CCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcc
Q 013827 92 RNEDDVSHLEVYILEESDGG---DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQP 168 (436)
Q Consensus 92 ~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~ 168 (436)
+.++ .+.+|+..... ....+..|. ....++.| ++++|++++.||.|++||.. +
T Consensus 78 ~~dg-----~i~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~---------~~~~l~~~~~d~~i~~~d~~--~---- 133 (313)
T 3odt_A 78 GKDT-----MINGVPLFATSGEDPLYTLIGHQ----GNVCSLSF---------QDGVVISGSWDKTAKVWKEG--S---- 133 (313)
T ss_dssp ETTS-----CEEEEETTCCTTSCC-CEECCCS----SCEEEEEE---------ETTEEEEEETTSEEEEEETT--E----
T ss_pred cCCC-----eEEEEEeeecCCCCcccchhhcc----cCEEEEEe---------cCCEEEEEeCCCCEEEEcCC--c----
Confidence 9887 55556544331 122222232 22345655 57899999999999999921 1
Q ss_pred eeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcc-cCCCeE
Q 013827 169 HVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-HTDKVQ 247 (436)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-~~~~v~ 247 (436)
....+..|...|.+++|+|....++++++.||.|++|| .++....+.. |...+.
T Consensus 134 -----------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~ 188 (313)
T 3odt_A 134 -----------------------LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVR 188 (313)
T ss_dssp -----------------------EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEE
T ss_pred -----------------------EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEE
Confidence 12224579999999999983346999999999999999 4566777776 899999
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCC
Q 013827 248 AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTS 327 (436)
Q Consensus 248 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~ 327 (436)
+++|+|++ . +++++.|+.|++||+++.+.......+...+.+++|+|++ .+++++.||.|++||+++.
T Consensus 189 ~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~~~~-------- 256 (313)
T 3odt_A 189 HLAVVDDG-H-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG--DIVSCGEDRTVRIWSKENG-------- 256 (313)
T ss_dssp EEEEEETT-E-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS--CEEEEETTSEEEEECTTTC--------
T ss_pred EEEEcCCC-e-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC--CEEEEecCCEEEEEECCCC--------
Confidence 99999998 5 9999999999999999988877777789999999999987 4889999999999999987
Q ss_pred CcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCcee
Q 013827 328 QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 375 (436)
Q Consensus 328 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~ 375 (436)
.....+..|...|.+++|+|++ . +++++.||.|++||+++++...
T Consensus 257 -~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 257 -SLKQVITLPAISIWSVDCMSNG-D-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp -CEEEEEECSSSCEEEEEECTTS-C-EEEEETTSCEEEEESCGGGCCC
T ss_pred -ceeEEEeccCceEEEEEEccCC-C-EEEEeCCCcEEEEeCCCCceee
Confidence 6678888999999999999998 5 6679999999999999876433
No 109
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-32 Score=275.38 Aligned_cols=249 Identities=22% Similarity=0.337 Sum_probs=207.7
Q ss_pred ceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEE
Q 013827 128 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 207 (436)
Q Consensus 128 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 207 (436)
.|++| +|++++|++|+.||.|+|||+.... ......+.+|...|++++
T Consensus 13 ~~l~~-------s~dg~~latg~~dg~I~vwd~~~~~-------------------------~~~~~~l~~h~~~V~~l~ 60 (753)
T 3jro_A 13 HDAVL-------DYYGKRLATCSSDKTIKIFEVEGET-------------------------HKLIDTLTGHEGPVWRVD 60 (753)
T ss_dssp EEECC-------CSSSCCEEEEETTTEEEEEEEETTE-------------------------EEEEEEECCCSSCEEEEE
T ss_pred EEEEE-------CCCCCeEEEEECCCcEEEEecCCCC-------------------------CccceeccCCcCceEEEE
Confidence 56666 8999999999999999999986321 223334668999999999
Q ss_pred ecCC--CCcEEEEEeCCCcEEEEeCCCCe--EEEEEcccCCCeEEEEEcCC--CCCEEEEEECCCcEEEEecCCCCCc--
Q 013827 208 WNKE--FRNILASASADKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTHS-- 279 (436)
Q Consensus 208 ~~~~--~~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~-- 279 (436)
|+|+ + .+|++|+.||.|++||+.+++ ....+.+|...|.+++|+|+ + ..+++|+.||.|++||++.....
T Consensus 61 ~s~~~~~-~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~ 138 (753)
T 3jro_A 61 WAHPKFG-TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSP 138 (753)
T ss_dssp ECCTTSC-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCC
T ss_pred ecCCCCC-CEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcce
Confidence 9987 5 599999999999999999987 67788889999999999999 7 89999999999999999887433
Q ss_pred cceEeeeCCeeEEEeCCC------------CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEec
Q 013827 280 GFKWAVAADVESLAWDPH------------AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN 347 (436)
Q Consensus 280 ~~~~~~~~~i~~~~~~~~------------~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 347 (436)
.....+...+.+++|+|. ++..+++|+.||.|++||+++... .......+.+|...|++++|+
T Consensus 139 ~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~-----~~~~~~~~~~h~~~V~~l~~s 213 (753)
T 3jro_A 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-----TYVLESTLEGHSDWVRDVAWS 213 (753)
T ss_dssp EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT-----EEEEEEEECCCSSCEEEEEEC
T ss_pred eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc-----cceeeeeecCCCCcEEEEEec
Confidence 334567889999999995 246899999999999999987621 113456778899999999999
Q ss_pred CC---CCCEEEEEeCCCcEEEEECCCCCce---eEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 348 PL---VPNLLATGSTDKMVKLWDLSNNQPS---CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 348 p~---~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
|+ + .+|++++.||.|++||+++++.. .......|.+.|++++|+|++++ +++++.||.|++|++..+.
T Consensus 214 p~~~~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~-l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 214 PTVLLR-SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-LALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCCSSS-EEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCC-EEEECSSSCEECCBCCSSS
T ss_pred cCCCCC-CEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCE-EEEEcCCCEEEEEecCCCC
Confidence 99 6 89999999999999999886421 22233457889999999999995 8999999999999998644
No 110
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-32 Score=254.80 Aligned_cols=265 Identities=10% Similarity=0.052 Sum_probs=201.2
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEee
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 150 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 150 (436)
+-...|.+++|+|||+++|+++.|. .|. +.... .....|. ....++++ +|+|
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~-----TV~--d~~~~---~~l~gh~----~~v~~V~F-------sPdg------- 64 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDI-----SIG--QPKYA---KDINCNS----KNLFHVKE-------FPLE------- 64 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSE-----EEE--EECCC---SCCSSBG----GGTEEEEE-------ECCC-------
T ss_pred HhhccEEEEEECCCCCEEEEEcCCc-----eee--ccccc---ceecCCC----ccEEEEEE-------CCCC-------
Confidence 4568899999999999999998885 555 33322 2122232 23345555 7888
Q ss_pred CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 013827 151 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 230 (436)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~ 230 (436)
.++.+.+|+.+...... + +|...|.+++|+|+| ..||+++.||.|++||.
T Consensus 65 ~~~~~~~~~~~~~~~~~----------------------------~-~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~ 114 (588)
T 2j04_A 65 FENKLDFELAQQNGLLN----------------------------S-QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKD 114 (588)
T ss_dssp CCCTTTTSCCCSSCSST----------------------------T-SCSCCEEEEEECSSS-SCEEEEETTSCEEEEET
T ss_pred CcceEEEEeCCCceEee----------------------------c-CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeC
Confidence 45665555543211111 1 468899999999997 59999999999999995
Q ss_pred CCCeEEEEEcccCC-----CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCC-------ccce----EeeeCCeeEEEe
Q 013827 231 AAGKCNLTLEHHTD-----KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-------SGFK----WAVAADVESLAW 294 (436)
Q Consensus 231 ~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------~~~~----~~~~~~i~~~~~ 294 (436)
+. .+..+. |.. .+.+++|+|+| ++|++|+.||+|++||+.++.. .... .+|...|.+++|
T Consensus 115 ~~--~l~~l~-~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVaw 190 (588)
T 2j04_A 115 NK--MLTNLD-SKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVW 190 (588)
T ss_dssp TE--EEEECC-CSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEE
T ss_pred Cc--eeeecc-CCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEE
Confidence 44 666667 665 49999999999 9999999999999999998753 1212 235579999999
Q ss_pred CCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE-eccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc
Q 013827 295 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 373 (436)
Q Consensus 295 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~ 373 (436)
+|++ +++++.|++|++||+..... .....++ .+|...|.+++|+ + ..||+++ +++|++||+.+++.
T Consensus 191 SPdg---Laass~D~tVrlWd~~~~~~------~~~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~ 257 (588)
T 2j04_A 191 YEDV---LVAALSNNSVFSMTVSASSH------QPVSRMIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSI 257 (588)
T ss_dssp ETTE---EEEEETTCCEEEECCCSSSS------CCCEEEEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTEE
T ss_pred cCCc---EEEEeCCCeEEEEECCCCcc------ccceeeecccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCeE
Confidence 9976 78889999999999987621 0123456 4788999999999 5 7888887 69999999998763
Q ss_pred eeEEeeCCCCCcEEEEEE--cCCCCcEEEEEeCCCcEEEEeCC
Q 013827 374 SCIASRNPKAGAVFSVAF--SEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 374 ~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
. . ...+|.+.|..++| +|++. .+++++.||+ ++|...
T Consensus 258 ~-~-~~~gh~~~V~~va~~~s~d~~-~La~a~edG~-klw~~d 296 (588)
T 2j04_A 258 S-S-LKTGSLENFHIIPLNHEKEST-ILLMSNKTSY-KVLLED 296 (588)
T ss_dssp E-E-EECSCCSCCCEEEETTCSSCE-EEEECSSCEE-EEEESS
T ss_pred E-E-EEcCCCceEEEEEeeeCCCCC-EEEEEcCCCC-EEEeec
Confidence 1 2 23379999999999 99998 5898999999 999975
No 111
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-31 Score=248.13 Aligned_cols=254 Identities=17% Similarity=0.224 Sum_probs=196.8
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecC--CCCCCceeeecccccCcCcceeecccCCCCCCCC--CcE
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEES--DGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK--GNF 145 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~ 145 (436)
..|.+.|.+++|+|++++|++++.++ .|.+|+.. .......+..| ...+.+++| +++ +++
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~h----~~~v~~~~~-------~~~~~~~~ 71 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSDK-----TIKIFEVEGETHKLIDTLTGH----EGPVWRVDW-------AHPKFGTI 71 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETTS-----CEEEEEEETTEEEEEEEECCC----SSCEEEEEE-------CCGGGCSE
T ss_pred cCCcccEEEEEEcCCCCEEEEEECCC-----cEEEEecCCCcceeeeEecCC----CCcEEEEEe-------CCCCCCCE
Confidence 36889999999999999999998876 44455443 22111122223 233467777 666 999
Q ss_pred EEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCC--CCcEEEEEeCCC
Q 013827 146 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE--FRNILASASADK 223 (436)
Q Consensus 146 l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~~~dg 223 (436)
|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ + .+|++++.|+
T Consensus 72 l~s~~~dg~v~iwd~~~~~~-------------------------~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~ 125 (379)
T 3jrp_A 72 LASCSYDGKVLIWKEENGRW-------------------------SQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDG 125 (379)
T ss_dssp EEEEETTSCEEEEEEETTEE-------------------------EEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTS
T ss_pred EEEeccCCEEEEEEcCCCce-------------------------eEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCC
Confidence 99999999999999976431 122234579999999999998 6 5999999999
Q ss_pred cEEEEeCCCCe--EEEEEcccCCCeEEEEEcC-------------CCCCEEEEEECCCcEEEEecCCCCCc----cceEe
Q 013827 224 QVKIWDVAAGK--CNLTLEHHTDKVQAVAWNH-------------HSPQILLSGSFDRSVVMKDARISTHS----GFKWA 284 (436)
Q Consensus 224 ~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~~l~s~~~d~~i~~wd~~~~~~~----~~~~~ 284 (436)
.|++||+.++. ....+..|...|.+++|+| ++ .++++++.|+.|++||+++.... .....
T Consensus 126 ~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 204 (379)
T 3jrp_A 126 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 204 (379)
T ss_dssp EEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred cEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEEec
Confidence 99999998873 3456678999999999999 46 89999999999999999876643 22335
Q ss_pred eeCCeeEEEeCCCC--CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCc
Q 013827 285 VAADVESLAWDPHA--EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM 362 (436)
Q Consensus 285 ~~~~i~~~~~~~~~--~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~ 362 (436)
|...+.+++|+|++ ..++++++.||.|++||++....... ........|...|.+++|+|++ .+|++++.||.
T Consensus 205 h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~ 279 (379)
T 3jrp_A 205 HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK----KTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNK 279 (379)
T ss_dssp CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCE----EEESSSSCCSSCEEEEEECSSS-CCEEEEESSSS
T ss_pred ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccce----eeeeccccCCCcEEEEEEcCCC-CEEEEecCCCc
Confidence 78899999999984 47999999999999999987631110 1111223478899999999999 89999999999
Q ss_pred EEEEECCCC
Q 013827 363 VKLWDLSNN 371 (436)
Q Consensus 363 i~iwd~~~~ 371 (436)
|++|++...
T Consensus 280 i~iw~~~~~ 288 (379)
T 3jrp_A 280 VTLWKENLE 288 (379)
T ss_dssp EEEEEEEET
T ss_pred EEEEeCCCC
Confidence 999998743
No 112
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=6.5e-31 Score=247.62 Aligned_cols=285 Identities=9% Similarity=0.050 Sum_probs=215.0
Q ss_pred cccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeee-cccccCcCcceeecccCCCCCCCCCcEEEEeeCC
Q 013827 74 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVH-HHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME 152 (436)
Q Consensus 74 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 152 (436)
..+.+++|+|++.+++++..++ .|++|+...++....... ........+.+++| +++++++++++.|
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~-----~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~~~s~~~d 190 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDE-----GMDVLDINSGQTVRLSPPEKYKKKLGFVETISI-------PEHNELWVSQMQA 190 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSS-----SEEEEETTTCCEEEECCCHHHHTTCCEEEEEEE-------GGGTEEEEEEGGG
T ss_pred CCceEEEEeCCCeEEEEeCCCC-----eEEEEECCCCeEeeecCcccccccCCceeEEEE-------cCCCEEEEEECCC
Confidence 4567999999777777665554 577777766522111000 00011123445666 7899999999999
Q ss_pred CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 153 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 232 (436)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~ 232 (436)
+.|++||+.+++.... +..|...+.+++|+|++..++++++.|+.|++||+.+
T Consensus 191 ~~v~~~d~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 191 NAVHVFDLKTLAYKAT---------------------------VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT 243 (433)
T ss_dssp TEEEEEETTTCCEEEE---------------------------EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred CEEEEEECCCceEEEE---------------------------EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence 9999999976544322 3368889999999999864556666899999999999
Q ss_pred CeEEEEEcccCCCeEEEEEcCCCCCEEEEEE--------CCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEE
Q 013827 233 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGS--------FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV 304 (436)
Q Consensus 233 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--------~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 304 (436)
++.+..+.. ...+.+++|+|++ ..+++++ .|+.|++||+++.+... ...+...+..++|+|++..++++
T Consensus 244 ~~~~~~~~~-~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~g~~l~~~ 320 (433)
T 3bws_A 244 KLEIRKTDK-IGLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKLID-TIGPPGNKRHIVSGNTENKIYVS 320 (433)
T ss_dssp TEEEEECCC-CSEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEEEE-EEEEEECEEEEEECSSTTEEEEE
T ss_pred CcEEEEecC-CCCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcEEe-eccCCCCcceEEECCCCCEEEEE
Confidence 998888875 4569999999999 7777777 58899999999876544 34556689999999998777888
Q ss_pred EeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeC---------------CCcEEEEECC
Q 013827 305 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST---------------DKMVKLWDLS 369 (436)
Q Consensus 305 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---------------d~~i~iwd~~ 369 (436)
++.++.|++||+.+. +....+. +...+.+++|+|++ .+|++++. ||.|++||+.
T Consensus 321 ~~~~~~v~v~d~~~~---------~~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 321 DMCCSKIEVYDLKEK---------KVQKSIP-VFDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp ETTTTEEEEEETTTT---------EEEEEEE-CSSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred ecCCCEEEEEECCCC---------cEEEEec-CCCCCCeEEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECC
Confidence 899999999999876 4444444 67789999999998 77777776 5799999999
Q ss_pred CCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEe-CCCcEEEEeCCC
Q 013827 370 NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLS 415 (436)
Q Consensus 370 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~ 415 (436)
+++. +..+.. ...+.+++|+|+|++ |++++ .|+.|++|++..
T Consensus 390 ~~~~--~~~~~~-~~~~~~~~~s~dg~~-l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 390 TDTV--KEFWEA-GNQPTGLDVSPDNRY-LVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TTEE--EEEEEC-SSSEEEEEECTTSCE-EEEEETTTTEEEEEEETT
T ss_pred CCcE--EEEecC-CCCCceEEEcCCCCE-EEEEECCCCeEEEEEecC
Confidence 8874 333333 347899999999996 55454 599999999864
No 113
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.8e-30 Score=243.44 Aligned_cols=224 Identities=26% Similarity=0.468 Sum_probs=196.3
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEe
Q 013827 141 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 220 (436)
Q Consensus 141 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 220 (436)
+++++|++|+.||.|++||+.+++... .+.+|...|.+++| ++ .+|++|+
T Consensus 141 ~d~~~l~~g~~dg~i~iwd~~~~~~~~---------------------------~~~~h~~~v~~l~~--~~-~~l~sg~ 190 (435)
T 1p22_A 141 YDDQKIVSGLRDNTIKIWDKNTLECKR---------------------------ILTGHTGSVLCLQY--DE-RVIITGS 190 (435)
T ss_dssp CCSSEEEEEESSSCEEEEESSSCCEEE---------------------------EECCCSSCEEEEEC--CS-SEEEEEE
T ss_pred ECCCEEEEEeCCCeEEEEeCCCCeEEE---------------------------EEcCCCCcEEEEEE--CC-CEEEEEc
Confidence 489999999999999999997654432 25589999999999 43 5999999
Q ss_pred CCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc---cceEeeeCCeeEEEeCCC
Q 013827 221 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS---GFKWAVAADVESLAWDPH 297 (436)
Q Consensus 221 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~~i~~~~~~~~ 297 (436)
.||.|++||+.+++.+..+.+|...|.+++|++ ..+++++.||.|++||+++.... .....|...+.+++|+
T Consensus 191 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-- 265 (435)
T 1p22_A 191 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-- 265 (435)
T ss_dssp TTSCEEEEESSSCCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--
Confidence 999999999999999999999999999999974 58999999999999999987765 3445678899999993
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEE
Q 013827 298 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 377 (436)
Q Consensus 298 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 377 (436)
+ ..+++|+.||.|++||+++. ..+..+..|...|.++.|+ + .++++|+.||.|++||+++++ .+.
T Consensus 266 ~-~~l~s~~~dg~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~--~~~ 330 (435)
T 1p22_A 266 D-KYIVSASGDRTIKVWNTSTC---------EFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGA--CLR 330 (435)
T ss_dssp T-TEEEEEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCC--EEE
T ss_pred C-CEEEEEeCCCeEEEEECCcC---------cEEEEEcCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCCCC--EEE
Confidence 3 68999999999999999987 6688889999999999995 3 799999999999999999987 566
Q ss_pred eeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 378 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 378 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
.+.+|...|.+++| ++. .|++|+.||.|++||+.+++
T Consensus 331 ~~~~h~~~v~~~~~--~~~-~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 331 VLEGHEELVRCIRF--DNK-RIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp EECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEEHHHHT
T ss_pred EEeCCcCcEEEEEe--cCC-EEEEEeCCCcEEEEECCCCC
Confidence 77889999999999 566 59999999999999997765
No 114
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-30 Score=237.87 Aligned_cols=283 Identities=8% Similarity=0.034 Sum_probs=201.8
Q ss_pred ccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEE
Q 013827 77 EDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE 156 (436)
Q Consensus 77 ~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 156 (436)
....+.+++.++++|+.++ .|.+|+...++....+. . ..+.++ .++|+ +++|+.|++|+
T Consensus 40 ~~~~~~~d~~~l~sg~~Dg-----~v~iwd~~~~~~~~~~~--~----~~v~~~-------~~~~~---~~s~s~D~~i~ 98 (343)
T 3lrv_A 40 LNKSMYYDKWVCMCRCEDG-----ALHFTQLKDSKTITTIT--T----PNPRTG-------GEHPA---IISRGPCNRLL 98 (343)
T ss_dssp ECSSSSEEEEEEEEEEETT-----EEEEEEESSSSCEEEEE--E----ECCCTT-------CCCCS---EEEECSTTEEE
T ss_pred hhhhhcCCCCEEEEECCCC-----cEEEEECCCCcEEEEEe--c----CCceee-------eeCCc---eEEecCCCeEE
Confidence 3356678999999999997 77778776653222221 1 111223 33676 99999999999
Q ss_pred EEeCCCCCCCcceeeecccchhhhhhcccCCCccc-ccccccCcccceeEEEecC--CCCcEEEEEeCCCcEEEEeCCCC
Q 013827 157 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSS-IKYKKGSHTDSVLGLAWNK--EFRNILASASADKQVKIWDVAAG 233 (436)
Q Consensus 157 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~--~~~~~l~s~~~dg~v~vwd~~~~ 233 (436)
+|+......... ..... +.....+|...|.+++|+| ++ .++++++.||+|++||++++
T Consensus 99 ~w~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~ 159 (343)
T 3lrv_A 99 LLYPGNQITILD------------------SKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDD 159 (343)
T ss_dssp EEETTTEEEEEE------------------TTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSS
T ss_pred EEEccCceEEee------------------cCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCC
Confidence 998764211000 00011 1112236778999999999 86 59999999999999999999
Q ss_pred eEEEEEc-ccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc-cceEe-eeCCeeEEEeCCCCCcEEEEEeCCCc
Q 013827 234 KCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWA-VAADVESLAWDPHAEHSFVVSLEDGT 310 (436)
Q Consensus 234 ~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~~~~~~~~dg~ 310 (436)
+...... .|...+.+++|+|++ .+|++|+.||.|++||+++.... ..... |...|.+++|+|++ .++++++ ++.
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g-~~l~s~~-~~~ 236 (343)
T 3lrv_A 160 SQYIVHSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNG-YWMVVEC-DQT 236 (343)
T ss_dssp CEEEEECCCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTS-SEEEEEE-SSB
T ss_pred cEEEEEecCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCC-CEEEEEe-CCe
Confidence 8877663 456689999999999 89999999999999999998876 43444 78999999999987 6788888 459
Q ss_pred EEEEeCCCCCCCCCCCCCcccEEEeccCCCe--EEEEecCCCCCEEEEEeC-CCcEEEEECCCCCceeEEeeCCCCCcEE
Q 013827 311 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV--CTISYNPLVPNLLATGST-DKMVKLWDLSNNQPSCIASRNPKAGAVF 387 (436)
Q Consensus 311 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~p~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 387 (436)
|++||+++...... +..+..|...+ .+++|+|++ .+|++++. |+.|++|++........ . .++.
T Consensus 237 v~iwd~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~g-~~l~~~s~~d~~i~v~~~~~~~~~~~--~----~~~~ 303 (343)
T 3lrv_A 237 VVCFDLRKDVGTLA------YPTYTIPEFKTGTVTYDIDDSG-KNMIAYSNESNSLTIYKFDKKTKNWT--K----DEES 303 (343)
T ss_dssp EEEEETTSSTTCBS------SCCCBC-----CCEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCSEE--E----EEEE
T ss_pred EEEEEcCCCCccee------ecccccccccccceEEEECCCC-CEEEEecCCCCcEEEEEEcccccceE--e----cCce
Confidence 99999998743111 11222233333 469999999 89999988 99999999976542221 1 4678
Q ss_pred EEEEcC---CCCcEEEEEeCCCcEEEEeCCCC
Q 013827 388 SVAFSE---DSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 388 ~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
.++|.+ +... +++++.||.+.++-....
T Consensus 304 ~~~~~~~~~~~~~-l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 304 ALCLQSDTADFTD-MDVVCGDGGIAAILKTND 334 (343)
T ss_dssp ECCC----CCCCE-EEEEEETTEEEEEEECSS
T ss_pred eEecCccccccce-eEEEecCCceEEEEecCC
Confidence 888988 7774 788889999988765443
No 115
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-31 Score=241.60 Aligned_cols=233 Identities=6% Similarity=0.029 Sum_probs=182.6
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
.+++.+|++|+.||+|++||+.+++..... ....|.++.|+|. ++++
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~-----------------------------~~~~v~~~~~~~~----~~s~ 91 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTITTI-----------------------------TTPNPRTGGEHPA----IISR 91 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCEEEE-----------------------------EEECCCTTCCCCS----EEEE
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEEEEE-----------------------------ecCCceeeeeCCc----eEEe
Confidence 568999999999999999999876654331 1466888888886 8999
Q ss_pred eCCCcEEEEeCC---------CCeEEEEEc-ccCCCeEEEEEcC--CCCCEEEEEECCCcEEEEecCCCCCccce-Eeee
Q 013827 220 SADKQVKIWDVA---------AGKCNLTLE-HHTDKVQAVAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFK-WAVA 286 (436)
Q Consensus 220 ~~dg~v~vwd~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~ 286 (436)
+.|++|++|+.. +++.+..+. .|..+|.+++|+| ++ .++++++.||.|++||+++.+..... ..+.
T Consensus 92 s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~ 170 (343)
T 3lrv_A 92 GPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHSAKSD 170 (343)
T ss_dssp CSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEECCCSS
T ss_pred cCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecCCC
Confidence 999999999765 445444443 6778999999999 88 89999999999999999988764433 2345
Q ss_pred CCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCccc-EEEec-cCCCeEEEEecCCCCCEEEEEeCCCcEE
Q 013827 287 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS-FTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVK 364 (436)
Q Consensus 287 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~~p~~~~~l~~~~~d~~i~ 364 (436)
..+.+++|+|++ .++++|+.||.|++||+++. ... ..+.. |..+|++++|+|++ .+|++++ |+.|+
T Consensus 171 ~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~---------~~~~~~~~~~h~~~v~~l~fs~~g-~~l~s~~-~~~v~ 238 (343)
T 3lrv_A 171 VEYSSGVLHKDS-LLLALYSPDGILDVYNLSSP---------DQASSRFPVDEEAKIKEVKFADNG-YWMVVEC-DQTVV 238 (343)
T ss_dssp CCCCEEEECTTS-CEEEEECTTSCEEEEESSCT---------TSCCEECCCCTTSCEEEEEECTTS-SEEEEEE-SSBEE
T ss_pred CceEEEEECCCC-CEEEEEcCCCEEEEEECCCC---------CCCccEEeccCCCCEEEEEEeCCC-CEEEEEe-CCeEE
Confidence 579999999987 68999999999999999987 334 56777 99999999999998 8999999 55999
Q ss_pred EEECCCCCcee-EEeeCCCCCcE--EEEEEcCCCCcEEEEEeC-CCcEEEEeCCCCccc
Q 013827 365 LWDLSNNQPSC-IASRNPKAGAV--FSVAFSEDSPFVLAIGGS-KGKLEIWDTLSDAGI 419 (436)
Q Consensus 365 iwd~~~~~~~~-~~~~~~~~~~v--~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~ 419 (436)
+||+++.+... +..+..|...+ .+++|+|++++ |++++. |+.|+||++.+....
T Consensus 239 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-l~~~s~~d~~i~v~~~~~~~~~ 296 (343)
T 3lrv_A 239 CFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN-MIAYSNESNSLTIYKFDKKTKN 296 (343)
T ss_dssp EEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE-EEEEETTTTEEEEEEECTTTCS
T ss_pred EEEcCCCCcceeecccccccccccceEEEECCCCCE-EEEecCCCCcEEEEEEcccccc
Confidence 99999876421 11112233333 46999999995 777777 999999999766543
No 116
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.3e-31 Score=247.12 Aligned_cols=285 Identities=12% Similarity=0.095 Sum_probs=207.4
Q ss_pred hhcccceeeec-----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEEec
Q 013827 20 YHSCFRCHKIS-----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNE 94 (436)
Q Consensus 20 ~~~~~~~~~~~-----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~ 94 (436)
+.+..|+||++ +.|+|++ ++..... . .+|...|.+++|+|+| .+
T Consensus 18 v~sv~~SpDG~~iASas~D~TV~--d~~~~~~--------------------l--~gh~~~v~~V~FsPdg-------~~ 66 (588)
T 2j04_A 18 KNNLTWARDGTLYLTTFPDISIG--QPKYAKD--------------------I--NCNSKNLFHVKEFPLE-------FE 66 (588)
T ss_dssp SCCEEECTTSCEEEECSSSEEEE--EECCCSC--------------------C--SSBGGGTEEEEEECCC-------CC
T ss_pred EEEEEECCCCCEEEEEcCCceee--cccccce--------------------e--cCCCccEEEEEECCCC-------Cc
Confidence 56778999887 8888888 4222211 1 3689999999999999 22
Q ss_pred CCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecc
Q 013827 95 DDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG 174 (436)
Q Consensus 95 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~ 174 (436)
+.|.++..++.. .+...+ ...+.+++| ||+|++||+++.||.|+|||.+.
T Consensus 67 ------~~~~~~~~~~~~-~~~~~~----~~~V~~vaw-------SPdG~~LAs~s~dg~V~iwd~~~------------ 116 (588)
T 2j04_A 67 ------NKLDFELAQQNG-LLNSQP----VCYPRVCKP-------SPIDDWMAVLSNNGNVSVFKDNK------------ 116 (588)
T ss_dssp ------CTTTTSCCCSSC-SSTTSC----SCCEEEEEE-------CSSSSCEEEEETTSCEEEEETTE------------
T ss_pred ------ceEEEEeCCCce-EeecCC----CCcEEEEEE-------CCCCCEEEEEeCCCcEEEEeCCc------------
Confidence 222222222111 111111 345678888 99999999999999999999643
Q ss_pred cchhhhhhcccCCCcccccccccCccc-----ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCe-------EEEEE---
Q 013827 175 IDEEKKKKKSKKGKKSSIKYKKGSHTD-----SVLGLAWNKEFRNILASASADKQVKIWDVAAGK-------CNLTL--- 239 (436)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~-------~~~~~--- 239 (436)
....+. |.. .|.+++|+|+| .+||+|+.||+|++||+.++. .+..+
T Consensus 117 -----------------~l~~l~-~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~ 177 (588)
T 2j04_A 117 -----------------MLTNLD-SKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS 177 (588)
T ss_dssp -----------------EEEECC-CSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS
T ss_pred -----------------eeeecc-CCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeecc
Confidence 111123 433 59999999997 599999999999999999875 35666
Q ss_pred -cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc---cce-EeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEE
Q 013827 240 -EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS---GFK-WAVAADVESLAWDPHAEHSFVVSLEDGTIKGF 314 (436)
Q Consensus 240 -~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~-~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~ 314 (436)
.+|...|.+++|+|+| +++++.|++|++||+...... ... ..|...|.+++|+ + ..+++++ ++.|++|
T Consensus 178 ~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLW 250 (588)
T 2j04_A 178 DAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKI 250 (588)
T ss_dssp CTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEE
T ss_pred cccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C-CEEEEEe-CCeEEEE
Confidence 6788899999999987 889999999999999887743 122 2567889999999 4 5788876 6999999
Q ss_pred eCCCCCCCCCCCCCcccEEEeccCCCeEEEEe--cCCCCCEEEEEeCCCcEEEEECCCC------Cc-------------
Q 013827 315 DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY--NPLVPNLLATGSTDKMVKLWDLSNN------QP------------- 373 (436)
Q Consensus 315 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~~~~~d~~i~iwd~~~~------~~------------- 373 (436)
|+... .......+|...+..++| +|++ ..|++++.||. ++|....- ..
T Consensus 251 d~~~~---------~~~~~~~gh~~~V~~va~~~s~d~-~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~ 319 (588)
T 2j04_A 251 DLKNY---------SISSLKTGSLENFHIIPLNHEKES-TILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWST 319 (588)
T ss_dssp ETTTT---------EEEEEECSCCSCCCEEEETTCSSC-EEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTT
T ss_pred ECCCC---------eEEEEEcCCCceEEEEEeeeCCCC-CEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEEC
Confidence 99876 332333389999999999 9998 89999999999 99987420 00
Q ss_pred --eeEEeeCCCCCcEEEEEEcCCCCcEEEEEeC
Q 013827 374 --SCIASRNPKAGAVFSVAFSEDSPFVLAIGGS 404 (436)
Q Consensus 374 --~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 404 (436)
.....+. +...|++++|+|||+ ++|+++.
T Consensus 320 ~g~~l~~~~-~~~~I~~va~SPdG~-~lA~~~~ 350 (588)
T 2j04_A 320 IWNEFNNYE-TTLVIHGISLSPDGY-SIAIVYD 350 (588)
T ss_dssp TTTSSSSSC-CEEEEEEEEECTTSS-EEEEEEE
T ss_pred CCCceeeec-cceEEEEEEECCCCC-EEEEEEe
Confidence 0011111 133589999999998 5877653
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.98 E-value=1.2e-29 Score=235.54 Aligned_cols=277 Identities=13% Similarity=0.117 Sum_probs=210.7
Q ss_pred ceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEE-EEeeCCCcEEEEeCCCCC
Q 013827 86 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIWDLDVID 164 (436)
Q Consensus 86 ~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~vw~~~~~~ 164 (436)
.++++++.++ .|.+|+....+.......+ ..+.+++| +|++++| ++++.|+.|++||+.+++
T Consensus 3 ~l~vs~~~d~-----~v~v~d~~~~~~~~~~~~~-----~~~~~~~~-------s~dg~~l~~~~~~d~~i~v~d~~~~~ 65 (391)
T 1l0q_A 3 FAYIANSESD-----NISVIDVTSNKVTATIPVG-----SNPMGAVI-------SPDGTKVYVANAHSNDVSIIDTATNN 65 (391)
T ss_dssp EEEEEETTTT-----EEEEEETTTTEEEEEEECS-----SSEEEEEE-------CTTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred EEEEEcCCCC-----EEEEEECCCCeEEEEeecC-----CCcceEEE-------CCCCCEEEEECCCCCeEEEEECCCCe
Confidence 3455565555 7888888765322222222 23567777 8999977 677789999999998655
Q ss_pred CCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCC
Q 013827 165 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTD 244 (436)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 244 (436)
.... +. +...+.+++|+|++..++++++.++.|++||+.+++.+..+.. ..
T Consensus 66 ~~~~---------------------------~~-~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~ 116 (391)
T 1l0q_A 66 VIAT---------------------------VP-AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GK 116 (391)
T ss_dssp EEEE---------------------------EE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SS
T ss_pred EEEE---------------------------EE-CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CC
Confidence 4332 11 2338999999999864556666789999999999998888874 45
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCC
Q 013827 245 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD 324 (436)
Q Consensus 245 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~ 324 (436)
.+.+++|+|++..++++++.++.|++||+++.+... .......+..++|+|++..++++++.++.|++||+++.
T Consensus 117 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~----- 190 (391)
T 1l0q_A 117 SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN-TVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN----- 190 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-----
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-EEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-----
Confidence 789999999994344788889999999998876654 33445678999999998666678889999999999876
Q ss_pred CCCCcccEEEeccCCCeEEEEecCCCCCEEEEEe---CCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEE
Q 013827 325 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS---TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAI 401 (436)
Q Consensus 325 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 401 (436)
.....+. +...+.+++|+|++ .+|++++ .++.|++||+.+++. +..+..+. .+.+++|+|++++++++
T Consensus 191 ----~~~~~~~-~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~--~~~~~~~~-~~~~~~~s~dg~~l~~s 261 (391)
T 1l0q_A 191 ----SVIDTVK-VEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKI--TARIPVGP-DPAGIAVTPDGKKVYVA 261 (391)
T ss_dssp ----EEEEEEE-CSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEE--EEEEECCS-SEEEEEECTTSSEEEEE
T ss_pred ----eEEEEEe-cCCCccceEECCCC-CEEEEEecCcCCCcEEEEECCCCeE--EEEEecCC-CccEEEEccCCCEEEEE
Confidence 3344443 56678999999998 7777776 689999999998863 44444444 57899999999976688
Q ss_pred EeCCCcEEEEeCCCCccccccc
Q 013827 402 GGSKGKLEIWDTLSDAGISNRF 423 (436)
Q Consensus 402 ~~~dg~i~iwd~~~~~~~~~~~ 423 (436)
++.|+.|++||+.+++.+....
T Consensus 262 ~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 262 LSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEE
T ss_pred cCCCCEEEEEECCCCcEEEEEE
Confidence 8899999999999988776543
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.8e-30 Score=243.57 Aligned_cols=207 Identities=15% Similarity=0.096 Sum_probs=173.2
Q ss_pred cCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCC--CCeEEEEEc--ccCCCeEEEEEcCCCCCEEEEEECCCcEEEEe
Q 013827 197 GSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA--AGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD 272 (436)
Q Consensus 197 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd 272 (436)
.+|...|++++|+|++..++++++.||.|++||+. +++.+..+. .|...|.+++|+|++ .+|++++.+|.+++|+
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD-TTVIIADKFGDVYSID 177 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEE
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC-CEEEEEeCCCcEEEEe
Confidence 46778899999999975335999999999999999 888888775 567899999999999 8999999999999999
Q ss_pred cCCCCCcc----ceEeeeCCeeEEEeCCC--CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEE-EeccCCCeEEEE
Q 013827 273 ARISTHSG----FKWAVAADVESLAWDPH--AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT-LHAHDKAVCTIS 345 (436)
Q Consensus 273 ~~~~~~~~----~~~~~~~~i~~~~~~~~--~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~ 345 (436)
+.+..... ....|...|.+++|+|+ +..++++++.|+.|++||+++. ..+.. +.+|...|.+++
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~---------~~~~~~~~~h~~~v~~~~ 248 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC---------FIVDKWLFGHKHFVSSIC 248 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT---------TCEEEECCCCSSCEEEEE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC---------ceeeeeecCCCCceEEEE
Confidence 98776543 56778899999999998 2368999999999999999876 44555 558999999999
Q ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeC-----------------------CCCCcEEEEEEcCCCCcEEEEE
Q 013827 346 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN-----------------------PKAGAVFSVAFSEDSPFVLAIG 402 (436)
Q Consensus 346 ~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~~~~~~~~~~~~l~s~ 402 (436)
|+ ++ .+|++++.|+.|++||+++++........ .....|.+++|+|++++ |+++
T Consensus 249 ~s-d~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~ 325 (450)
T 2vdu_B 249 CG-KD-YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF-VAFF 325 (450)
T ss_dssp EC-ST-TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE-EEEE
T ss_pred EC-CC-CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE-EEEE
Confidence 99 77 89999999999999999998753333211 23457999999999996 6666
Q ss_pred e-CCCcEEEEeC--CCC
Q 013827 403 G-SKGKLEIWDT--LSD 416 (436)
Q Consensus 403 ~-~dg~i~iwd~--~~~ 416 (436)
+ .|+.|++|++ ..+
T Consensus 326 ~~~d~~i~iw~~~~~~~ 342 (450)
T 2vdu_B 326 VEATKCIIILEMSEKQK 342 (450)
T ss_dssp ETTCSEEEEEEECSSST
T ss_pred ECCCCeEEEEEeccCCC
Confidence 6 8999999999 554
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.6e-31 Score=268.30 Aligned_cols=253 Identities=17% Similarity=0.224 Sum_probs=198.2
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCC--CCCceeeecccccCcCcceeecccCCCCCCCC--CcE
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG--GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK--GNF 145 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~ 145 (436)
.+|.+.|.+++|+|++++|++|+.++ .|.+|+.... .....+..| ...+.++.| +|+ +++
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg~~dg-----~I~vwd~~~~~~~~~~~l~~h----~~~V~~l~~-------s~~~~~~~ 69 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATCSSDK-----TIKIFEVEGETHKLIDTLTGH----EGPVWRVDW-------AHPKFGTI 69 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEEETTT-----EEEEEEEETTEEEEEEEECCC----SSCEEEEEE-------CCTTSCSE
T ss_pred ccCcceeEEEEECCCCCeEEEEECCC-----cEEEEecCCCCCccceeccCC----cCceEEEEe-------cCCCCCCE
Confidence 47899999999999999999998886 5666655422 111122223 234467777 666 999
Q ss_pred EEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCC--CCcEEEEEeCCC
Q 013827 146 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE--FRNILASASADK 223 (436)
Q Consensus 146 l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~~~dg 223 (436)
|++|+.||.|++||+.+++. .....+.+|...|++++|+|+ + .++++|+.||
T Consensus 70 l~s~s~Dg~I~vwd~~~~~~-------------------------~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg 123 (753)
T 3jro_A 70 LASCSYDGKVLIWKEENGRW-------------------------SQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDG 123 (753)
T ss_dssp EEEEETTSCEEEEEEETTEE-------------------------EEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTS
T ss_pred EEEEeCCCeEEEEECCCCcc-------------------------cccccccCCCCCeEEEEECCCCCC-CEEEEEeCCC
Confidence 99999999999999875431 122235579999999999998 6 5999999999
Q ss_pred cEEEEeCCCC--eEEEEEcccCCCeEEEEEcCC-------------CCCEEEEEECCCcEEEEecCCCCCc----cceEe
Q 013827 224 QVKIWDVAAG--KCNLTLEHHTDKVQAVAWNHH-------------SPQILLSGSFDRSVVMKDARISTHS----GFKWA 284 (436)
Q Consensus 224 ~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~-------------~~~~l~s~~~d~~i~~wd~~~~~~~----~~~~~ 284 (436)
.|++||+.++ .....+.+|...|.+++|+|. + .++++|+.||.|++||+++.... .....
T Consensus 124 ~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~ 202 (753)
T 3jro_A 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 202 (753)
T ss_dssp EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeeeecC
Confidence 9999999877 334566789999999999994 5 88999999999999999887533 23345
Q ss_pred eeCCeeEEEeCCCC--CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCc
Q 013827 285 VAADVESLAWDPHA--EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM 362 (436)
Q Consensus 285 ~~~~i~~~~~~~~~--~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~ 362 (436)
|...|.+++|+|++ +.++++++.||.|++||+++...... ........|...|++++|+|++ .+|++++.||.
T Consensus 203 h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~----~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~Dg~ 277 (753)
T 3jro_A 203 HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK----KTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNK 277 (753)
T ss_dssp CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCB----CCBSSSSCCSSCCCCEEECTTT-CCEEEECSSSC
T ss_pred CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcce----eEEeccCCCCCceEEEEEcCCC-CEEEEEcCCCE
Confidence 78899999999984 47999999999999999988632111 1233345688899999999998 89999999999
Q ss_pred EEEEECCC
Q 013827 363 VKLWDLSN 370 (436)
Q Consensus 363 i~iwd~~~ 370 (436)
|++|++..
T Consensus 278 I~vwd~~~ 285 (753)
T 3jro_A 278 VTLWKENL 285 (753)
T ss_dssp EECCBCCS
T ss_pred EEEEecCC
Confidence 99999974
No 120
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=8.7e-30 Score=234.17 Aligned_cols=251 Identities=19% Similarity=0.296 Sum_probs=195.7
Q ss_pred CcceeecccCCCCCCCC---CcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccc
Q 013827 126 FPLCMAWLDCPLKDREK---GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 202 (436)
Q Consensus 126 ~~~~~~~~~~~~~~s~~---~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 202 (436)
.+.|++| +|+ |++|++|+.||.|+|||+.+.... ....+.+|...
T Consensus 41 ~v~~~~~-------~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~-------------------------~~~~~~~h~~~ 88 (368)
T 3mmy_A 41 SIGCLSF-------SPPTLPGNFLIAGSWANDVRCWEVQDSGQT-------------------------IPKAQQMHTGP 88 (368)
T ss_dssp CEEEEEE-------CCTTSSSEEEEEEETTSEEEEEEECTTSCE-------------------------EEEEEEECSSC
T ss_pred ceEEEEE-------cCCCCCceEEEEECCCCcEEEEEcCCCCce-------------------------eEEEeccccCC
Confidence 3467887 788 699999999999999999752211 11235579999
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEE--cCCCCCEEEEEECCCcEEEEecCCCCCcc
Q 013827 203 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAW--NHHSPQILLSGSFDRSVVMKDARISTHSG 280 (436)
Q Consensus 203 v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 280 (436)
|++++|+|++ .+|++++.||.|++||+.+++... +..|...|.+++| ++++ .+|++++.|+.|++||+++.+...
T Consensus 89 v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~ 165 (368)
T 3mmy_A 89 VLDVCWSDDG-SKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMM 165 (368)
T ss_dssp EEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSE
T ss_pred EEEEEECcCC-CEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEE
Confidence 9999999996 599999999999999999988766 4569999999999 8888 899999999999999999887665
Q ss_pred ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEE-EeccCCCeEEEEecCCC---CCEEEE
Q 013827 281 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT-LHAHDKAVCTISYNPLV---PNLLAT 356 (436)
Q Consensus 281 ~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~---~~~l~~ 356 (436)
. ......+.++.+.+ ..+++++.++.+.+|+++... ..... ...+...+.++.+.++. +..+++
T Consensus 166 ~-~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (368)
T 3mmy_A 166 V-LQLPERCYCADVIY---PMAVVATAERGLIVYQLENQP--------SEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL 233 (368)
T ss_dssp E-EECSSCEEEEEEET---TEEEEEEGGGCEEEEECSSSC--------EEEEECCCSCSSCEEEEEEEECTTSCEEEEEE
T ss_pred E-EecCCCceEEEecC---CeeEEEeCCCcEEEEEecccc--------chhhhccccccCCCceEEEcccCCCCCCeEEE
Confidence 3 34445677777765 478889999999999998762 11111 12233455666665543 123999
Q ss_pred EeCCCcEEEEECCCCCc-eeEEeeCCCCC------------cEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccc
Q 013827 357 GSTDKMVKLWDLSNNQP-SCIASRNPKAG------------AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 423 (436)
Q Consensus 357 ~~~d~~i~iwd~~~~~~-~~~~~~~~~~~------------~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (436)
++.|+.|++||++.... .....+..|.. .|++++|+|++++ |++++.||.|++||+.+++.+....
T Consensus 234 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (368)
T 3mmy_A 234 GSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT-LATVGSDGRFSFWDKDARTKLKTSE 312 (368)
T ss_dssp EETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCC-EEEEETTSCEEEEETTTTEEEEECC
T ss_pred ecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCE-EEEEccCCeEEEEECCCCcEEEEec
Confidence 99999999999998743 23445555554 6999999999995 8999999999999999988876554
Q ss_pred c
Q 013827 424 S 424 (436)
Q Consensus 424 ~ 424 (436)
.
T Consensus 313 ~ 313 (368)
T 3mmy_A 313 Q 313 (368)
T ss_dssp C
T ss_pred C
Confidence 3
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=4.1e-29 Score=228.65 Aligned_cols=240 Identities=11% Similarity=0.162 Sum_probs=181.4
Q ss_pred CcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeE
Q 013827 126 FPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG 205 (436)
Q Consensus 126 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 205 (436)
.+.|++| +|||++||+|+.++ ++||++++.+.... .+...+..
T Consensus 21 ~V~~v~f-------s~dg~~la~g~~~~-~~iw~~~~~~~~~~-----------------------------~~~~~~~~ 63 (355)
T 3vu4_A 21 PVTDYEF-------NQDQSCLILSTLKS-FEIYNVHPVAHIMS-----------------------------QEMRHLSK 63 (355)
T ss_dssp CCCEEEE-------CTTSSEEEEECSSE-EEEEEETTEEEEEE-----------------------------EECSCCCE
T ss_pred ceEEEEE-------CCCCCEEEEEcCCE-EEEEecCCcceeee-----------------------------eecCCeEE
Confidence 3457777 99999999998775 78999875432211 12224778
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC-CCccceEe
Q 013827 206 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-THSGFKWA 284 (436)
Q Consensus 206 ~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~ 284 (436)
+++.+++..++++++.|++|++||+.+++.+..+. +...|.+++|+++. ++++ .|+.|++||+.+. +.......
T Consensus 64 ~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 64 VRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp EEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCEE
T ss_pred EEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEecc
Confidence 88888865444678888999999999999998887 67799999999764 4443 4889999999987 54443333
Q ss_pred eeCCeeEEEeCCCCCcEEEE--EeCCCcEEEEeCCCCCCCCCC------CCCcc-cEEEeccCCCeEEEEecCCCCCEEE
Q 013827 285 VAADVESLAWDPHAEHSFVV--SLEDGTIKGFDIRTAKSDPDS------TSQQS-SFTLHAHDKAVCTISYNPLVPNLLA 355 (436)
Q Consensus 285 ~~~~i~~~~~~~~~~~~~~~--~~~dg~i~i~d~~~~~~~~~~------~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~ 355 (436)
+...+++++ ..+++ |+.+|.|++||+++....... ....+ +..+.+|...|++++|+|++ .+|+
T Consensus 139 ---~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~ 211 (355)
T 3vu4_A 139 ---FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVA 211 (355)
T ss_dssp ---EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS-SEEE
T ss_pred ---CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEE
Confidence 444556666 34444 689999999999875311000 00112 67889999999999999998 9999
Q ss_pred EEeCCCc-EEEEECCCCCceeEEeeC-C-CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 356 TGSTDKM-VKLWDLSNNQPSCIASRN-P-KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 356 ~~~~d~~-i~iwd~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
+|+.|++ |++||+++++. +..+. + |.+.|.+++|+|+++ +|++++.|+.|++||+..+.
T Consensus 212 s~s~d~~~v~iwd~~~~~~--~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 212 TCSQDGTIIRVFKTEDGVL--VREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEETTCSEEEEEETTTCCE--EEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSCCS
T ss_pred EEeCCCCEEEEEECCCCcE--EEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccCCC
Confidence 9999998 99999999884 44554 4 889999999999999 59999999999999998764
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.1e-28 Score=229.20 Aligned_cols=308 Identities=14% Similarity=0.119 Sum_probs=218.4
Q ss_pred cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEE-ecCCcceeEEEEEecCC
Q 013827 31 NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCAR-NEDDVSHLEVYILEESD 109 (436)
Q Consensus 31 ~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~~~~~~~v~~~~~~~ 109 (436)
+.|+++++|++...+..... .+...+.+++|+|+++++++++ .++ .|.+|+...
T Consensus 9 ~~d~~v~v~d~~~~~~~~~~--------------------~~~~~~~~~~~s~dg~~l~~~~~~d~-----~i~v~d~~~ 63 (391)
T 1l0q_A 9 SESDNISVIDVTSNKVTATI--------------------PVGSNPMGAVISPDGTKVYVANAHSN-----DVSIIDTAT 63 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEE--------------------ECSSSEEEEEECTTSSEEEEEEGGGT-----EEEEEETTT
T ss_pred CCCCEEEEEECCCCeEEEEe--------------------ecCCCcceEEECCCCCEEEEECCCCC-----eEEEEECCC
Confidence 67899999998766553211 1123488999999999875544 555 788888766
Q ss_pred CCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe-eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCC
Q 013827 110 GGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG-SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGK 188 (436)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (436)
.+...... ....+.+++| +|++++|+++ +.++.|++||+.+++....
T Consensus 64 ~~~~~~~~-----~~~~v~~~~~-------spdg~~l~~~~~~~~~v~v~d~~~~~~~~~-------------------- 111 (391)
T 1l0q_A 64 NNVIATVP-----AGSSPQGVAV-------SPDGKQVYVTNMASSTLSVIDTTSNTVAGT-------------------- 111 (391)
T ss_dssp TEEEEEEE-----CSSSEEEEEE-------CTTSSEEEEEETTTTEEEEEETTTTEEEEE--------------------
T ss_pred CeEEEEEE-----CCCCccceEE-------CCCCCEEEEEECCCCEEEEEECCCCeEEEE--------------------
Confidence 52222222 2224567777 8999988654 5679999999986544322
Q ss_pred cccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcE
Q 013827 189 KSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV 268 (436)
Q Consensus 189 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 268 (436)
+ .+...+.+++|+|++..++++++.|+.|++||+.+++.+..+..+ ..+.+++|+|++..++++++.++.|
T Consensus 112 -------~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v 182 (391)
T 1l0q_A 112 -------V-KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSI 182 (391)
T ss_dssp -------E-ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEE
T ss_pred -------E-eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEE
Confidence 1 234568999999998645578888999999999999988888755 5679999999994444778889999
Q ss_pred EEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEe---CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEE
Q 013827 269 VMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS 345 (436)
Q Consensus 269 ~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 345 (436)
++||+++..... ...+...+.+++|+|++. .+++++ .++.|++||+++. +.+..+..+. .+.+++
T Consensus 183 ~~~d~~~~~~~~-~~~~~~~~~~~~~~~~g~-~l~~~~~~~~~~~v~~~d~~~~---------~~~~~~~~~~-~~~~~~ 250 (391)
T 1l0q_A 183 SVIDTVTNSVID-TVKVEAAPSGIAVNPEGT-KAYVTNVDKYFNTVSMIDTGTN---------KITARIPVGP-DPAGIA 250 (391)
T ss_dssp EEEETTTTEEEE-EEECSSEEEEEEECTTSS-EEEEEEECSSCCEEEEEETTTT---------EEEEEEECCS-SEEEEE
T ss_pred EEEECCCCeEEE-EEecCCCccceEECCCCC-EEEEEecCcCCCcEEEEECCCC---------eEEEEEecCC-CccEEE
Confidence 999998876554 344567789999999885 555555 7999999999876 4556666554 578999
Q ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEE---EEE------------EcCCC---------CcEEEE
Q 013827 346 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF---SVA------------FSEDS---------PFVLAI 401 (436)
Q Consensus 346 ~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~---~~~------------~~~~~---------~~~l~s 401 (436)
|+|++..++++++.|+.|++||+.+++. +..+..+..+.. .+. |+.+. ...+..
T Consensus 251 ~s~dg~~l~~s~~~d~~v~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~ 328 (391)
T 1l0q_A 251 VTPDGKKVYVALSFXNTVSVIDTATNTI--TATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTD 328 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEE
T ss_pred EccCCCEEEEEcCCCCEEEEEECCCCcE--EEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEe
Confidence 9999933447778899999999998764 333333322210 012 22111 123666
Q ss_pred EeCCCcEEEEeCCCCcc
Q 013827 402 GGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 402 ~~~dg~i~iwd~~~~~~ 418 (436)
.+.|..+++|++..+..
T Consensus 329 ~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 329 LSKDATEWKWDFGDGSS 345 (391)
T ss_dssp CCBSCSEEEEECSSSCE
T ss_pred CCCCceEEEEECCCCcc
Confidence 66788999999987764
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.2e-28 Score=232.03 Aligned_cols=301 Identities=10% Similarity=0.069 Sum_probs=220.7
Q ss_pred ccccccce---eccCCceEEEEEecCCcc-----------eeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCC
Q 013827 73 SEDLEDMT---INPNDAVIVCARNEDDVS-----------HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLK 138 (436)
Q Consensus 73 ~~~v~~~~---~sp~~~~l~~~~~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
...+..++ |+|++..+++....+... .+.+|.++.... .+...........+.+++|
T Consensus 60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~---~~~~~~~~~~~~~~~~~~~------ 130 (433)
T 3bws_A 60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGI---THRFISRFKTGFQPKSVRF------ 130 (433)
T ss_dssp TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTC---SEEEEEEEECSSCBCCCEE------
T ss_pred CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCC---cceEEEEEcCCCCceEEEE------
Confidence 45678888 999988777654432111 125666655433 2222222223334456666
Q ss_pred CCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 139 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 139 ~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
+|++.++++++.++.|++||+.+++..... ....+.+|...|.+++|+|++ .++++
T Consensus 131 -s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~----------------------~~~~~~~~~~~v~~~~~~~~~-~~~~s 186 (433)
T 3bws_A 131 -IDNTRLAIPLLEDEGMDVLDINSGQTVRLS----------------------PPEKYKKKLGFVETISIPEHN-ELWVS 186 (433)
T ss_dssp -SSSSEEEEEBTTSSSEEEEETTTCCEEEEC----------------------CCHHHHTTCCEEEEEEEGGGT-EEEEE
T ss_pred -eCCCeEEEEeCCCCeEEEEECCCCeEeeec----------------------CcccccccCCceeEEEEcCCC-EEEEE
Confidence 888888899999999999999876544211 011234788999999999986 69999
Q ss_pred EeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCC
Q 013827 219 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA 298 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~ 298 (436)
++.|+.|++||+++++.+..+..|...+.+++|+|++..++++++.|+.|++||+++.+... .......+.+++|+|++
T Consensus 187 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~g 265 (433)
T 3bws_A 187 QMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIR-KTDKIGLPRGLLLSKDG 265 (433)
T ss_dssp EGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-ECCCCSEEEEEEECTTS
T ss_pred ECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEE-EecCCCCceEEEEcCCC
Confidence 99999999999999999999988999999999999994344566689999999998776543 23334568999999988
Q ss_pred CcEEEEEe--------CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 013827 299 EHSFVVSL--------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 299 ~~~~~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~ 370 (436)
. .+++++ .|+.|++||++++ +.... ..|...+.+++|+|++..++++++.|+.|++||+.+
T Consensus 266 ~-~l~~~~~~~~~~~~~dg~i~~~d~~~~---------~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~ 334 (433)
T 3bws_A 266 K-ELYIAQFSASNQESGGGRLGIYSMDKE---------KLIDT-IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE 334 (433)
T ss_dssp S-EEEEEEEESCTTCSCCEEEEEEETTTT---------EEEEE-EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT
T ss_pred C-EEEEEECCCCccccCCCeEEEEECCCC---------cEEee-ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC
Confidence 5 566655 5889999999876 33333 345668899999999855667778999999999998
Q ss_pred CCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeC---------------CCcEEEEeCCCCcccccc
Q 013827 371 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS---------------KGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 371 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---------------dg~i~iwd~~~~~~~~~~ 422 (436)
++. ...+. +...+.+++|+|++++ +++++. ||.|++||+.+++.+...
T Consensus 335 ~~~--~~~~~-~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~ 397 (433)
T 3bws_A 335 KKV--QKSIP-VFDKPNTIALSPDGKY-LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW 397 (433)
T ss_dssp TEE--EEEEE-CSSSEEEEEECTTSSE-EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred CcE--EEEec-CCCCCCeEEEcCCCCE-EEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence 763 33333 5567999999999995 555554 579999999998876543
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=8.3e-29 Score=217.14 Aligned_cols=184 Identities=15% Similarity=0.121 Sum_probs=140.3
Q ss_pred cEEEEEe--CCCcEEEEeC-CCCeEEEEEcccCCCeEEEEEcC---CCCCEEEEEECCCcEEEEecCCCCCccceEee--
Q 013827 214 NILASAS--ADKQVKIWDV-AAGKCNLTLEHHTDKVQAVAWNH---HSPQILLSGSFDRSVVMKDARISTHSGFKWAV-- 285 (436)
Q Consensus 214 ~~l~s~~--~dg~v~vwd~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-- 285 (436)
+++.+++ .|+.|++|++ .+++.+..+..|...+..++|++ ++ .+|++++.|++|++||+++++....+..+
T Consensus 146 ~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~ 224 (356)
T 2w18_A 146 RLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTGQLLKKMHIDDS 224 (356)
T ss_dssp EEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTCCEEEEEECCC-
T ss_pred cEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCCcEEEEEcCCCc
Confidence 3455533 5889999999 45788888888999999999998 56 89999999999999999999877665543
Q ss_pred -eCCeeEEEeCCCCCcE-----------EEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE-----eccCCCeEEEEecC
Q 013827 286 -AADVESLAWDPHAEHS-----------FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-----HAHDKAVCTISYNP 348 (436)
Q Consensus 286 -~~~i~~~~~~~~~~~~-----------~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~p 348 (436)
...+.+++|+|++..+ +++|+.|++|++||..++ ..+..+ .+|...+.+..++
T Consensus 225 ~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg---------k~l~v~~~~~p~Gh~~~~lsg~~s- 294 (356)
T 2w18_A 225 YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT---------LSVGVMLYCLPPGQAGRFLEGDVK- 294 (356)
T ss_dssp --CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT---------EEEEEEEECCCTTCCCCEEEEEEE-
T ss_pred ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC---------EEEEEEEeeccCCCcceeEccccC-
Confidence 3467788999987432 366888999999999877 333333 3555555544544
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEE-EEEEcCCCCcEEEEEeCCCcEEEEeC
Q 013827 349 LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF-SVAFSEDSPFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 349 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~dg~i~iwd~ 413 (436)
+ .++++++.|++|+|||+.+++ .+..+.+|...+. .++|+|||+ +|++|+.|++|+|||+
T Consensus 295 -g-~~lASgS~DgTIkIWDl~tGk--~l~tL~gH~~~vvs~vafSPDG~-~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 295 -D-HCAAAILTSGTIAIWDLLLGQ--CTALLPPVSDQHWSFVKWSGTDS-HLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -T-TEEEEEETTSCEEEEETTTCS--EEEEECCC--CCCCEEEECSSSS-EEEEECTTSCEEEEEE
T ss_pred -C-CEEEEEcCCCcEEEEECCCCc--EEEEecCCCCCeEEEEEECCCCC-EEEEEECCCcEEEecC
Confidence 4 789999999999999999998 5667778876555 689999999 5999999999999995
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=2e-29 Score=234.01 Aligned_cols=298 Identities=10% Similarity=0.039 Sum_probs=183.1
Q ss_pred cccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchh-h-hhhcccCCCcccccccc
Q 013827 119 HHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE-K-KKKKSKKGKKSSIKYKK 196 (436)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 196 (436)
+..++...|.++.|... ++++..|++++.++.|.+|+................... . .................
T Consensus 10 ~~lpl~~~p~~~~w~~~----~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (393)
T 4gq1_A 10 YQLPLNVRPYTTTWCSQ----SPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSE 85 (393)
T ss_dssp EECCTTCCEEEEEECTT----SGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEEC
T ss_pred eEecCCCCCeEEEEeCC----CCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccc
Confidence 45567778888998533 455544555556888999986432221100000000000 0 00000000000111112
Q ss_pred cCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEE-----EEcccCCCeEEEEEcC--------CCCCEEEEEE
Q 013827 197 GSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-----TLEHHTDKVQAVAWNH--------HSPQILLSGS 263 (436)
Q Consensus 197 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~-----~~~~~~~~v~~~~~~~--------~~~~~l~s~~ 263 (436)
..|...+....+.++ ..+|++++.|++|+|||+++++... .+.+|.+.|++++|+| ++ ++|++++
T Consensus 86 ~~~~~~~~~~~~~~~-~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s 163 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVY-SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVG 163 (393)
T ss_dssp C----------CCEE-EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEE
T ss_pred cccCCCcceeecCCC-CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-CEEEEEE
Confidence 234444444444455 4689999999999999999886543 3578999999999997 66 8999999
Q ss_pred CCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCC----------------C
Q 013827 264 FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST----------------S 327 (436)
Q Consensus 264 ~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~----------------~ 327 (436)
.|++|++||+++.........+...+.+++|+|++..++++++.|++|++||+++........ .
T Consensus 164 ~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~ 243 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP 243 (393)
T ss_dssp TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence 999999999998887777888999999999999887789999999999999998875422110 0
Q ss_pred CcccEEEeccCCCeEEEEec-CCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEE-----------------
Q 013827 328 QQSSFTLHAHDKAVCTISYN-PLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV----------------- 389 (436)
Q Consensus 328 ~~~~~~~~~~~~~v~~~~~~-p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~----------------- 389 (436)
........+|...+.++.|+ |++ ..|++++.|+++++||+...+. ...+..|...+..+
T Consensus 244 ~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (393)
T 4gq1_A 244 LVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANND--YNEISDSTMKLGPKNLLPNVQGISLFPSLLG 320 (393)
T ss_dssp GC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC---------------------CCSCSEEEECSSCCSSC
T ss_pred ceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCC--CceEeeecCccccEEEccccccccccCccee
Confidence 01112234677889999987 676 8999999999999999987652 22222332222222
Q ss_pred -EEcC-CCCcEEEEEeCCCcEEEEeCCCCccccccccC
Q 013827 390 -AFSE-DSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 425 (436)
Q Consensus 390 -~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 425 (436)
.|+| .+..++++|+.||.|+|||+.+++.+.....+
T Consensus 321 ~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~ 358 (393)
T 4gq1_A 321 ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQL 358 (393)
T ss_dssp CEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEEC
T ss_pred EEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCC
Confidence 2333 34445778889999999999999887665544
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=3.3e-27 Score=227.07 Aligned_cols=334 Identities=10% Similarity=0.065 Sum_probs=232.4
Q ss_pred cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEEecCCcceeEEEEEec--C
Q 013827 31 NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEE--S 108 (436)
Q Consensus 31 ~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~--~ 108 (436)
+.|+++++||....++...+. .++. +..++|+|||++|++++.++ .|.+|+. .
T Consensus 156 ~~d~~V~v~D~~t~~~~~~i~------------------~g~~--~~~v~~spdg~~l~v~~~d~-----~V~v~D~~~~ 210 (543)
T 1nir_A 156 RDAGQIALVDGDSKKIVKVID------------------TGYA--VHISRMSASGRYLLVIGRDA-----RIDMIDLWAK 210 (543)
T ss_dssp GGGTEEEEEETTTCCEEEEEE------------------CSTT--EEEEEECTTSCEEEEEETTS-----EEEEEETTSS
T ss_pred cCCCeEEEEECCCceEEEEEe------------------cCcc--cceEEECCCCCEEEEECCCC-----eEEEEECcCC
Confidence 567777777766555432111 1112 77899999999999998775 7888887 4
Q ss_pred CCCCCceeeecccccCcCcceeecccCCCCCCC----CCcEEEEeeC-CCcEEEEeCCCCCCCcceeeecccchhhhhhc
Q 013827 109 DGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE----KGNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKK 183 (436)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----~~~~l~~g~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (436)
.. .. .........+..+++ +| ||++|++++. +++|.|||..+.+.+..+...+..
T Consensus 211 t~---~~--~~~i~~g~~p~~va~-------sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~-------- 270 (543)
T 1nir_A 211 EP---TK--VAEIKIGIEARSVES-------SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT-------- 270 (543)
T ss_dssp SC---EE--EEEEECCSEEEEEEE-------CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC--------
T ss_pred CC---cE--EEEEecCCCcceEEe-------CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcc--------
Confidence 33 11 112222333445555 89 9999999984 899999999877665443211100
Q ss_pred ccCCCcccccccccCccc-ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEE--EEcccCCCeEEEEEcCCCCCEEE
Q 013827 184 SKKGKKSSIKYKKGSHTD-SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILL 260 (436)
Q Consensus 184 ~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~ 260 (436)
.....-|.. .+.++.++|+++.++++...++.|.+||+.+.+.+. .+. +...+..+.|+|++..+++
T Consensus 271 ---------~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~v 340 (543)
T 1nir_A 271 ---------VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMT 340 (543)
T ss_dssp ---------SSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEE
T ss_pred ---------cCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEE
Confidence 000001333 789999999888888899999999999998765443 443 5667889999999933445
Q ss_pred EEECCCcEEEEecCCCCCccceEe----eeCCeeEEEeCCCCCcEEEEEe-CCCcEEEEeCCCCCCCCCCCCCcccEEEe
Q 013827 261 SGSFDRSVVMKDARISTHSGFKWA----VAADVESLAWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLH 335 (436)
Q Consensus 261 s~~~d~~i~~wd~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 335 (436)
++..+++|.+||+.+++....... |.+....+ ++|++..+++++. .|++|.+||+.+..... ...+.+.++.
T Consensus 341 a~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~--~~~~~v~~l~ 417 (543)
T 1nir_A 341 AANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ--YAWKKVAELQ 417 (543)
T ss_dssp EEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT--TBTSEEEEEE
T ss_pred EecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch--hcCeEEEEEE
Confidence 556689999999998876553332 33333333 4677556777775 68999999998732110 1136788899
Q ss_pred ccCCCeEEEEecCCCCCEEEEEe-------CCCcEEEEECCCCCce-eEEe------eCCCCCcEEEEEEcCCCCcEEEE
Q 013827 336 AHDKAVCTISYNPLVPNLLATGS-------TDKMVKLWDLSNNQPS-CIAS------RNPKAGAVFSVAFSEDSPFVLAI 401 (436)
Q Consensus 336 ~~~~~v~~~~~~p~~~~~l~~~~-------~d~~i~iwd~~~~~~~-~~~~------~~~~~~~v~~~~~~~~~~~~l~s 401 (436)
.|...+..++++|++ .+|++++ .+++|.+||+.+.+.. .... +..+...+..+.|+|+|++++++
T Consensus 418 ~~g~~~~~v~~~pdg-~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s 496 (543)
T 1nir_A 418 GQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS 496 (543)
T ss_dssp CSCSCCCCEECCTTC-CEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEE
T ss_pred cCCCCceEEEcCCCC-CcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEE
Confidence 998888999999999 8888877 2679999999988753 2221 13456789999999999986665
Q ss_pred Ee----CCCcEEEEeCCCCccccccc
Q 013827 402 GG----SKGKLEIWDTLSDAGISNRF 423 (436)
Q Consensus 402 ~~----~dg~i~iwd~~~~~~~~~~~ 423 (436)
.. .++.|.|||..+++++...-
T Consensus 497 ~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 497 VWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp EECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred eecCCCCCCeEEEEECCCceEEEeec
Confidence 43 47999999999999876543
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=8.7e-28 Score=210.69 Aligned_cols=215 Identities=12% Similarity=0.128 Sum_probs=156.2
Q ss_pred CccccccceeccC----CceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEE
Q 013827 72 DSEDLEDMTINPN----DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA 147 (436)
Q Consensus 72 ~~~~v~~~~~sp~----~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 147 (436)
+...|.+++|+|| ++.++.++.+ +.++ .. ++++++.
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~-----~~v~--~l---------------------------------~~g~lv~ 149 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI-----KAVL--GL---------------------------------TKRRLVS 149 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE-----EEEE--EE---------------------------------TTTEEEE
T ss_pred cccceEEEEECCCccccccEEEeCCCe-----EEEE--ec---------------------------------CCCcEEE
Confidence 4567888888888 7787776533 1332 11 2466666
Q ss_pred Eee--CCCcEEEEeCCC-CCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecC---CCCcEEEEEeC
Q 013827 148 VGS--MEPAIEIWDLDV-IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK---EFRNILASASA 221 (436)
Q Consensus 148 ~g~--~dg~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~l~s~~~ 221 (436)
+++ .|+.|++|++.. ++.. ..+.+|...+..++|+| ++ .+|++++.
T Consensus 150 ss~~g~d~~V~~~~~s~dG~~~---------------------------~s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~ 201 (356)
T 2w18_A 150 SSGTLSDQQVEVMTFAEDGGGK---------------------------ENQFLMPPEETILTFAEVQGMQ-EALLGTTI 201 (356)
T ss_dssp EESSSTTCEEEEEEECTTSCEE---------------------------EEEEECCCSSCEEEEEEEETST-TEEEEEET
T ss_pred ecccCCCCcEEEEEECCCCcee---------------------------eeeccCCCceeeEEeeccCCCC-ceEEEecC
Confidence 643 699999999953 2222 22447888999999998 54 69999999
Q ss_pred CCcEEEEeCCCCeEEEEEcccC---CCeEEEEEcCCCCCEE------------EEEECCCcEEEEecCCCCCccceE---
Q 013827 222 DKQVKIWDVAAGKCNLTLEHHT---DKVQAVAWNHHSPQIL------------LSGSFDRSVVMKDARISTHSGFKW--- 283 (436)
Q Consensus 222 dg~v~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l------------~s~~~d~~i~~wd~~~~~~~~~~~--- 283 (436)
|++|+|||++++++++++.+|. ..+.+++|+|++ .++ ++|+.|++|++||..+++......
T Consensus 202 D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~ 280 (356)
T 2w18_A 202 MNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL 280 (356)
T ss_dssp TSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTEEEEEEEECC
T ss_pred CCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec
Confidence 9999999999999999997654 367788999998 655 678899999999998876543221
Q ss_pred --eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeE-EEEecCCCCCEEEEEeCC
Q 013827 284 --AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC-TISYNPLVPNLLATGSTD 360 (436)
Q Consensus 284 --~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~~~~~d 360 (436)
++...+.+..++ + .++++++.|++|+|||+.++ +.+.++.+|...+. .++|+|++ .+|++|+.|
T Consensus 281 p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tG---------k~l~tL~gH~~~vvs~vafSPDG-~~LaSGS~D 347 (356)
T 2w18_A 281 PPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLG---------QCTALLPPVSDQHWSFVKWSGTD-SHLLAGQKD 347 (356)
T ss_dssp CTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTC---------SEEEEECCC--CCCCEEEECSSS-SEEEEECTT
T ss_pred cCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCC---------cEEEEecCCCCCeEEEEEECCCC-CEEEEEECC
Confidence 223334333433 2 57899999999999999988 67888988887655 68999999 899999999
Q ss_pred CcEEEEEC
Q 013827 361 KMVKLWDL 368 (436)
Q Consensus 361 ~~i~iwd~ 368 (436)
++|+|||+
T Consensus 348 ~TIklWd~ 355 (356)
T 2w18_A 348 GNIFVYHY 355 (356)
T ss_dssp SCEEEEEE
T ss_pred CcEEEecC
Confidence 99999985
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=6.8e-25 Score=204.76 Aligned_cols=267 Identities=15% Similarity=0.036 Sum_probs=190.3
Q ss_pred CCccccccceecc--------------CCceEEEEEecC-CcceeEEEEEecCCCCCCceeeecccccCcCcceeecccC
Q 013827 71 EDSEDLEDMTINP--------------NDAVIVCARNED-DVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC 135 (436)
Q Consensus 71 ~~~~~v~~~~~sp--------------~~~~l~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (436)
.|...+..+++++ .+..++.++.++ +.....|++|+..... ...+..|. ....+++|
T Consensus 115 ~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~~~----~~v~~~~~--- 186 (415)
T 2hqs_A 115 VNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHRSP----QPLMSPAW--- 186 (415)
T ss_dssp ECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEEES----SCEEEEEE---
T ss_pred cChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeCCC----CcceeeEE---
Confidence 3455677777765 255565555442 1111378888876542 23333332 23456777
Q ss_pred CCCCCCCCcEEEEeeCCC---cEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCC
Q 013827 136 PLKDREKGNFMAVGSMEP---AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF 212 (436)
Q Consensus 136 ~~~~s~~~~~l~~g~~dg---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 212 (436)
+|||++||+++.++ .|++||+.+++... +..|...+.+++|+|+|
T Consensus 187 ----Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~----------------------------l~~~~~~~~~~~~spdg 234 (415)
T 2hqs_A 187 ----SPDGSKLAYVTFESGRSALVIQTLANGAVRQ----------------------------VASFPRHNGAPAFSPDG 234 (415)
T ss_dssp ----CTTSSEEEEEECTTSSCEEEEEETTTCCEEE----------------------------EECCSSCEEEEEECTTS
T ss_pred ----cCCCCEEEEEEecCCCcEEEEEECCCCcEEE----------------------------eecCCCcccCEEEcCCC
Confidence 99999999999875 99999998654321 33577889999999998
Q ss_pred CcEEEEEeCCCc--EEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEEC-CC--cEEEEecCCCCCccceEeeeC
Q 013827 213 RNILASASADKQ--VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-DR--SVVMKDARISTHSGFKWAVAA 287 (436)
Q Consensus 213 ~~~l~s~~~dg~--v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~ 287 (436)
..++++++.|+. |++||+.+++. ..+..|...+.+++|+|+| ..|++++. ++ .|.+||+.+..... ...+..
T Consensus 235 ~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~~~~~ 311 (415)
T 2hqs_A 235 SKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGS 311 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSS
T ss_pred CEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCCEEE-EecCCC
Confidence 644447777665 99999998775 5677788899999999999 77777765 45 67777887765332 233456
Q ss_pred CeeEEEeCCCCCcEEEEEe-C--CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCC---
Q 013827 288 DVESLAWDPHAEHSFVVSL-E--DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK--- 361 (436)
Q Consensus 288 ~i~~~~~~~~~~~~~~~~~-~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~--- 361 (436)
.+..++|+|++. ++++++ . +..|.+||+.++ . ...+..+. .+.+++|+|++ .+|++++.++
T Consensus 312 ~~~~~~~spdG~-~l~~~~~~~g~~~i~~~d~~~~---------~-~~~l~~~~-~~~~~~~spdg-~~l~~~s~~~~~~ 378 (415)
T 2hqs_A 312 QNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLATG---------G-VQVLSSTF-LDETPSLAPNG-TMVIYSSSQGMGS 378 (415)
T ss_dssp EEEEEEECTTSS-EEEEEEECSSCEEEEEEETTTC---------C-EEECCCSS-SCEEEEECTTS-SEEEEEEEETTEE
T ss_pred cccCeEECCCCC-EEEEEECcCCceEEEEEECCCC---------C-EEEecCCC-CcCCeEEcCCC-CEEEEEEcCCCcc
Confidence 788999999985 455544 3 358999999876 2 23444444 78999999999 7888877766
Q ss_pred cEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCC
Q 013827 362 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP 396 (436)
Q Consensus 362 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 396 (436)
.|++||+.... ...+..|.+.|.+++|+|...
T Consensus 379 ~l~~~d~~g~~---~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 379 VLNLVSTDGRF---KARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEEETTSCC---EEECCCSSSEEEEEEECCCCC
T ss_pred EEEEEECCCCc---EEEeeCCCCCCcCCccccccc
Confidence 79999998654 556778889999999999754
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=5.4e-25 Score=211.67 Aligned_cols=287 Identities=12% Similarity=0.097 Sum_probs=212.0
Q ss_pred ceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEE
Q 013827 79 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 158 (436)
Q Consensus 79 ~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 158 (436)
..|+|++.+++++..++ .|.+|+....+....+. ....+.++++ +|||++|++++.|++|++|
T Consensus 143 ~~~~p~~~~~vs~~~d~-----~V~v~D~~t~~~~~~i~-----~g~~~~~v~~-------spdg~~l~v~~~d~~V~v~ 205 (543)
T 1nir_A 143 NDLDLPNLFSVTLRDAG-----QIALVDGDSKKIVKVID-----TGYAVHISRM-------SASGRYLLVIGRDARIDMI 205 (543)
T ss_dssp SCCCGGGEEEEEEGGGT-----EEEEEETTTCCEEEEEE-----CSTTEEEEEE-------CTTSCEEEEEETTSEEEEE
T ss_pred cccCCCCEEEEEEcCCC-----eEEEEECCCceEEEEEe-----cCcccceEEE-------CCCCCEEEEECCCCeEEEE
Confidence 35899998888887776 78888877653222111 1111334444 9999999999999999999
Q ss_pred eC--CCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecC----CCCcEEEEEe-CCCcEEEEeCC
Q 013827 159 DL--DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK----EFRNILASAS-ADKQVKIWDVA 231 (436)
Q Consensus 159 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~l~s~~-~dg~v~vwd~~ 231 (436)
|+ .+++.+.. +. +...+..++|+| +|+ +|++++ .+++|.+||..
T Consensus 206 D~~~~t~~~~~~---------------------------i~-~g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~~ 256 (543)
T 1nir_A 206 DLWAKEPTKVAE---------------------------IK-IGIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDGE 256 (543)
T ss_dssp ETTSSSCEEEEE---------------------------EE-CCSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEETT
T ss_pred ECcCCCCcEEEE---------------------------Ee-cCCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEecc
Confidence 99 54333221 22 345679999999 975 777776 58999999999
Q ss_pred CCeEEEEEcc----------cC-CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc-ceEeeeCCeeEEEeCCCCC
Q 013827 232 AGKCNLTLEH----------HT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAE 299 (436)
Q Consensus 232 ~~~~~~~~~~----------~~-~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~i~~~~~~~~~~ 299 (436)
+++++..+.. |. ..+..+.++|+++.++++...++.|.+||..+.+... ....+...+..+.|+|++.
T Consensus 257 t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~ 336 (543)
T 1nir_A 257 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHR 336 (543)
T ss_dssp TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSC
T ss_pred ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCC
Confidence 9999888754 22 3789999999887788888899999999998765443 1234556788999999986
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec----cCCCeEEEEecCCCCCEEEEEe-CCCcEEEEECCCCC--
Q 013827 300 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA----HDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLSNNQ-- 372 (436)
Q Consensus 300 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~~l~~~~-~d~~i~iwd~~~~~-- 372 (436)
.+++++..+++|.+||+.++ +.+..+.. |.+....+ ++|++..+++++. .|++|.+||+.+..
T Consensus 337 ~l~va~~~~~~v~v~D~~tg---------~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~ 406 (543)
T 1nir_A 337 YFMTAANNSNKVAVIDSKDR---------RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHP 406 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTT---------EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred EEEEEecCCCeEEEEECCCC---------eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCc
Confidence 56667778999999999987 44555553 54433333 5787546777776 58999999998711
Q ss_pred ---ceeEEeeCCCCCcEEEEEEcCCCCcEEEEEe-------CCCcEEEEeCCCCcccccc
Q 013827 373 ---PSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-------SKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 373 ---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~ 422 (436)
...+..+..|.+.+..++++|++++ |++++ .+++|.|||+.+++.+.+.
T Consensus 407 ~~~~~~v~~l~~~g~~~~~v~~~pdg~~-l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~ 465 (543)
T 1nir_A 407 QYAWKKVAELQGQGGGSLFIKTHPKSSH-LYVDTTFNPDARISQSVAVFDLKNLDAKYQV 465 (543)
T ss_dssp TTBTSEEEEEECSCSCCCCEECCTTCCE-EEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred hhcCeEEEEEEcCCCCceEEEcCCCCCc-EEEecCCCCCcccCceEEEEECCCCCCCeEE
Confidence 2367777888778889999999996 66555 2679999999999877443
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1.6e-24 Score=202.25 Aligned_cols=293 Identities=11% Similarity=0.074 Sum_probs=200.0
Q ss_pred CccccccceeccCCceEE-EEEec---CCcceeEEEEEec--CCCCCC--ceeeecccccCcCcceeecccC-------C
Q 013827 72 DSEDLEDMTINPNDAVIV-CARNE---DDVSHLEVYILEE--SDGGDP--NLYVHHHIIIPAFPLCMAWLDC-------P 136 (436)
Q Consensus 72 ~~~~v~~~~~sp~~~~l~-~~~~~---~~~~~~~v~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~ 136 (436)
....+...+|++.|..++ +|+.. ++...+.+.+|+. ..++.. ..+..|...+. ++++... .
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~d~~~~~~~ 136 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLR----YAGHTASDEVFEKLT 136 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHH----HHHHHHHHHHHHHHH
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHH----HHHHHHHHHHHHHHc
Confidence 346788999999997555 55432 2212346788887 655321 11222322221 1111000 0
Q ss_pred CCCCCCCcEEEEeeCC------CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecC
Q 013827 137 LKDREKGNFMAVGSME------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK 210 (436)
Q Consensus 137 ~~~s~~~~~l~~g~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 210 (436)
-...+.+..++.++.+ +.|++||++... .. .+.+|...|.+++|+|
T Consensus 137 g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---------------------------~l~~~~~~v~~~~~Sp 188 (415)
T 2hqs_A 137 GIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---------------------------VVHRSPQPLMSPAWSP 188 (415)
T ss_dssp SSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---------------------------EEEEESSCEEEEEECT
T ss_pred CCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---------------------------EEeCCCCcceeeEEcC
Confidence 0002236667766654 799999997422 11 1346888999999999
Q ss_pred CCCcEEEEEeCCC---cEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEE-EEECCCc--EEEEecCCCCCccceEe
Q 013827 211 EFRNILASASADK---QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILL-SGSFDRS--VVMKDARISTHSGFKWA 284 (436)
Q Consensus 211 ~~~~~l~s~~~dg---~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~d~~--i~~wd~~~~~~~~~~~~ 284 (436)
+| ..|++++.++ .|++||+.+++.. .+..|...+.+++|+|+| ..|+ +++.++. |.+||+.+.+.. ....
T Consensus 189 dg-~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg-~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~ 264 (415)
T 2hqs_A 189 DG-SKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDG-SKLAFALSKTGSLNLYVMDLASGQIR-QVTD 264 (415)
T ss_dssp TS-SEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCEE-ECCC
T ss_pred CC-CEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCC-CEEEEEEecCCCceEEEEECCCCCEE-eCcC
Confidence 97 5888888875 9999999998865 466688899999999999 6555 7776665 999999876653 3445
Q ss_pred eeCCeeEEEeCCCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCC--
Q 013827 285 VAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD-- 360 (436)
Q Consensus 285 ~~~~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-- 360 (436)
+...+.+++|+|++..+++++..++ .|.+||+.+++ ...+..+...+..++|+|++ .+|++++.+
T Consensus 265 ~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~----------~~~l~~~~~~~~~~~~spdG-~~l~~~~~~~g 333 (415)
T 2hqs_A 265 GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA----------PQRITWEGSQNQDADVSSDG-KFMVMVSSNGG 333 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC----------CEECCCSSSEEEEEEECTTS-SEEEEEEECSS
T ss_pred CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC----------EEEEecCCCcccCeEECCCC-CEEEEEECcCC
Confidence 6778999999999854444444455 67777887652 33445567788999999999 777777654
Q ss_pred -CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCC---cEEEEeCCCC
Q 013827 361 -KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG---KLEIWDTLSD 416 (436)
Q Consensus 361 -~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~ 416 (436)
..|++||+.+++. ..+..+. .+.+++|+|+|++ |++++.++ .|++||+..+
T Consensus 334 ~~~i~~~d~~~~~~---~~l~~~~-~~~~~~~spdg~~-l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 334 QQHIAKQDLATGGV---QVLSSTF-LDETPSLAPNGTM-VIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp CEEEEEEETTTCCE---EECCCSS-SCEEEEECTTSSE-EEEEEEETTEEEEEEEETTSC
T ss_pred ceEEEEEECCCCCE---EEecCCC-CcCCeEEcCCCCE-EEEEEcCCCccEEEEEECCCC
Confidence 5899999998873 3344444 7999999999995 66666665 7999998744
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=8.2e-24 Score=191.62 Aligned_cols=286 Identities=8% Similarity=-0.000 Sum_probs=192.5
Q ss_pred ceeccCCceEEEEE-ecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeC-CCcEE
Q 013827 79 MTINPNDAVIVCAR-NEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM-EPAIE 156 (436)
Q Consensus 79 ~~~sp~~~~l~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~ 156 (436)
..|.+++..+.++. .++ .|.+|+...++ +....... ...+ +++| +|++++|++++. ++.|.
T Consensus 3 ~~~~~~~~~~~v~~~~~~-----~v~~~d~~~~~---~~~~~~~~-~~~~-~~~~-------s~dg~~l~~~~~~~~~i~ 65 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLR-----RISFFSTDTLE---ILNQITLG-YDFV-DTAI-------TSDCSNVVVTSDFCQTLV 65 (331)
T ss_dssp ----CCCCEEEEEEGGGT-----EEEEEETTTCC---EEEEEECC-CCEE-EEEE-------CSSSCEEEEEESTTCEEE
T ss_pred eeEcCCCCEEEEEecCCC-----eEEEEeCcccc---eeeeEEcc-CCcc-eEEE-------cCCCCEEEEEeCCCCeEE
Confidence 35667666655544 444 78888877652 22111111 1122 5555 899997766655 89999
Q ss_pred EEeCCCCCC-CcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCC---cEEEEeCCC
Q 013827 157 IWDLDVIDE-VQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK---QVKIWDVAA 232 (436)
Q Consensus 157 vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg---~v~vwd~~~ 232 (436)
+||..+++. ... +..+..+..+++|+|+|. +|+++..++ .|.+||+.+
T Consensus 66 ~~d~~~~~~~~~~---------------------------~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~v~d~~~ 117 (331)
T 3u4y_A 66 QIETQLEPPKVVA---------------------------IQEGQSSMADVDITPDDQ-FAVTVTGLNHPFNMQSYSFLK 117 (331)
T ss_dssp EEECSSSSCEEEE---------------------------EEECSSCCCCEEECTTSS-EEEECCCSSSSCEEEEEETTT
T ss_pred EEECCCCceeEEe---------------------------cccCCCCccceEECCCCC-EEEEecCCCCcccEEEEECCC
Confidence 999987654 221 223445555599999975 676555553 899999999
Q ss_pred CeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCc-EEEEecCCCCCcc----ceEeeeCCeeEEEeCCCCCcEEEEEeC
Q 013827 233 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS-VVMKDARISTHSG----FKWAVAADVESLAWDPHAEHSFVVSLE 307 (436)
Q Consensus 233 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~ 307 (436)
++.+..+.. ...+.+++|+|++..++++...++. |.+|++....... ........+..++|+|++..+++++..
T Consensus 118 ~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 196 (331)
T 3u4y_A 118 NKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLI 196 (331)
T ss_dssp TEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETT
T ss_pred CCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCC
Confidence 998887764 4457899999999556666677788 9999998654331 122334568999999998656777778
Q ss_pred CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEE-eCCCcEEEEECCCCCceeEEeeCCC----
Q 013827 308 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG-STDKMVKLWDLSNNQPSCIASRNPK---- 382 (436)
Q Consensus 308 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~---- 382 (436)
++.|.+||+.+.+. ...+..+. ....+..++|+|++ ++|+++ ..++.|.+||+.+++...+.....+
T Consensus 197 ~~~v~v~d~~~~~~------~~~~~~~~-~~~~~~~~~~spdg-~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 268 (331)
T 3u4y_A 197 GNSIGILETQNPEN------ITLLNAVG-TNNLPGTIVVSRDG-STVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLID 268 (331)
T ss_dssp TTEEEEEECSSTTS------CEEEEEEE-CSSCCCCEEECTTS-SEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCC
T ss_pred CCeEEEEECCCCcc------cceeeecc-CCCCCceEEECCCC-CEEEEEEcCCCEEEEEECCCCceeeecccccccccC
Confidence 99999999987621 01144444 34667889999999 655544 4578899999998875333333222
Q ss_pred CC---cEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 383 AG---AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 383 ~~---~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
.. ....++|+|+++++++++..++.|.+||+.....
T Consensus 269 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 269 PRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred CCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 11 2355899999997667677778999999987553
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=2.4e-24 Score=216.65 Aligned_cols=292 Identities=9% Similarity=0.097 Sum_probs=205.2
Q ss_pred ccccccceeccCCceEEEEEe-cCCcceeEEEEEecCCCCCCceeeeccccc---------------C-----cCcceee
Q 013827 73 SEDLEDMTINPNDAVIVCARN-EDDVSHLEVYILEESDGGDPNLYVHHHIII---------------P-----AFPLCMA 131 (436)
Q Consensus 73 ~~~v~~~~~sp~~~~l~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---------------~-----~~~~~~~ 131 (436)
...+.+++|||||++|++++. +++.....|++|+...++...+...+...- . ....+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-- 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD-- 113 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC--
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce--
Confidence 456889999999999999987 543334588999887764333332221110 0 01123
Q ss_pred cccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCC--CCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEec
Q 013827 132 WLDCPLKDREKGNFMAVGSMEPAIEIWDLDVID--EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN 209 (436)
Q Consensus 132 ~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 209 (436)
+.|||||++|++++. +.|++||+.++. ... .+..|...+..++|+
T Consensus 114 -----~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---------------------------~l~~~~~~~~~~~~S 160 (741)
T 2ecf_A 114 -----YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---------------------------QLTHGEGFATDAKLS 160 (741)
T ss_dssp -----CEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---------------------------BCCCSSSCEEEEEEC
T ss_pred -----eEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---------------------------EcccCCcccccccCC
Confidence 344999999999986 999999998652 111 134577889999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCC----------------eEEEEEcCCCCCEEEEEECCC-------
Q 013827 210 KEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDK----------------VQAVAWNHHSPQILLSGSFDR------- 266 (436)
Q Consensus 210 ~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~----------------v~~~~~~~~~~~~l~s~~~d~------- 266 (436)
|+|+ +|+.++ ++.|++||+.+++.......+... +..+.|+|+| +.|++++.|+
T Consensus 161 PDG~-~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~ 237 (741)
T 2ecf_A 161 PKGG-FVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQK 237 (741)
T ss_dssp TTSS-EEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEE
T ss_pred CCCC-EEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEe
Confidence 9974 787777 468999999988766554444332 4789999999 7777777665
Q ss_pred --------------------------cEEEEecCC-CCCccceE--eeeCCeeEEEeCCCCCcEEEEEe----CCCcEEE
Q 013827 267 --------------------------SVVMKDARI-STHSGFKW--AVAADVESLAWDPHAEHSFVVSL----EDGTIKG 313 (436)
Q Consensus 267 --------------------------~i~~wd~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~----~dg~i~i 313 (436)
.|.+||+.+ ++...... .+...+..++| |++..+++++. .+..|.+
T Consensus 238 ~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~ 316 (741)
T 2ecf_A 238 RYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVE 316 (741)
T ss_dssp EEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEE
T ss_pred cCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEE
Confidence 788999987 65433222 24567899999 99864444443 3568999
Q ss_pred EeCCCCCCCCCCCCCcccEEEeccCC----CeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEE
Q 013827 314 FDIRTAKSDPDSTSQQSSFTLHAHDK----AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV 389 (436)
Q Consensus 314 ~d~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 389 (436)
||+.++ .....+..+.. .+..++|+|++ +++++++.|+.++||.+..... ...+..+...+..+
T Consensus 317 ~d~~~g---------~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~~~~~~--~~~l~~~~~~v~~~ 384 (741)
T 2ecf_A 317 VTLASN---------QQRVLAHETSPTWVPLHNSLRFLDDG-SILWSSERTGFQHLYRIDSKGK--AAALTHGNWSVDEL 384 (741)
T ss_dssp EETTTC---------CEEEEEEEECSSCCCCCSCCEECTTS-CEEEEECTTSSCEEEEECSSSC--EEESCCSSSCEEEE
T ss_pred EECCCC---------ceEEEEEcCCCCcCCcCCceEECCCC-eEEEEecCCCccEEEEEcCCCC--eeeeeecceEEEeE
Confidence 999887 33444444443 45689999999 6899999999888887763222 44566667778887
Q ss_pred -EEcCCCCcEEEEEeCCC--cEEEEeCCC
Q 013827 390 -AFSEDSPFVLAIGGSKG--KLEIWDTLS 415 (436)
Q Consensus 390 -~~~~~~~~~l~s~~~dg--~i~iwd~~~ 415 (436)
.|+|+++.++++++.++ .++||++..
T Consensus 385 ~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 385 LAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp EEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred eEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 59999997666676666 899999864
No 133
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=1.1e-23 Score=211.37 Aligned_cols=344 Identities=13% Similarity=0.083 Sum_probs=210.4
Q ss_pred hhcccceeeec----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEEecC
Q 013827 20 YHSCFRCHKIS----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNED 95 (436)
Q Consensus 20 ~~~~~~~~~~~----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~ 95 (436)
...+.|+|++. +.|+++++|++...+... .... .......|.+++|||||++|+++..+.
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~------~~~~----------~~~~~~~v~~~~~SpDg~~l~~~~~~~ 82 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVETNTSTV------LIEG----------KKIESLRAIRYEISPDREYALFSYNVE 82 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEE------EECT----------TTTTTTTCSEEEECTTSSEEEEEESCC
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCCCcEEE------Eecc----------ccccccccceEEECCCCCEEEEEecCc
Confidence 45677999876 678999999887654311 0000 001112489999999999999987653
Q ss_pred Ccc----eeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceee
Q 013827 96 DVS----HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVI 171 (436)
Q Consensus 96 ~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~ 171 (436)
... ...+++|+...+....+. ... .....+.++ .|||||++||.++. +.|++|++.+++.......
T Consensus 83 ~~~~~~~~~~i~~~d~~~~~~~~l~-~~~-~~~~~~~~~-------~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 83 PIYQHSYTGYYVLSKIPHGDPQSLD-PPE-VSNAKLQYA-------GWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp CCSSSCCCSEEEEEESSSCCCEECC-CTT-CCSCCCSBC-------CBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred cceeecceeeEEEEECCCCceEecc-CCc-ccccccccc-------EECCCCCEEEEEEC-CeEEEEECCCCceEEEecC
Confidence 321 147888887765321111 110 001112233 44999999999986 7999999987654321100
Q ss_pred ecccchhhhhhcccCCCcccccccccCcc---------cceeEEEecCCCCcEEEEEeCCC-------------------
Q 013827 172 LGGIDEEKKKKKSKKGKKSSIKYKKGSHT---------DSVLGLAWNKEFRNILASASADK------------------- 223 (436)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~l~s~~~dg------------------- 223 (436)
+ .....+.++. ..+.+++|+|+|. .|++++.|+
T Consensus 153 --~----------------~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~-~la~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (723)
T 1xfd_A 153 --G----------------KEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTGSIYPTV 213 (723)
T ss_dssp --C----------------BTTTEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSSSSSCCC
T ss_pred --C----------------CCCceECcccceeEEEEeccCcceEEECCCCC-EEEEEEECCCccceEEeeccCCcCCCcc
Confidence 0 0000001111 1347899999974 777776543
Q ss_pred ---------------cEEEEeCCCCeEEEEEccc------CCCeEEEEEcCCCCCEEEEEEC----CCcEEEEecCCCCC
Q 013827 224 ---------------QVKIWDVAAGKCNLTLEHH------TDKVQAVAWNHHSPQILLSGSF----DRSVVMKDARISTH 278 (436)
Q Consensus 224 ---------------~v~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~~~----d~~i~~wd~~~~~~ 278 (436)
.|++||+.+++....+..+ ...+..++|+|+| +++++... +..|.+||+.+++.
T Consensus 214 ~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~g~~ 292 (723)
T 1xfd_A 214 KPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGVC 292 (723)
T ss_dssp EEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred eeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeCCCCcc
Confidence 7999999988765666544 5678999999999 67766643 35799999988775
Q ss_pred ccceEee-eCCe----eEEEeCCCCCcEEEE-EeCCC------cEEEEeC-CCCCCCCCCCCCcccEEEeccCCCeEE-E
Q 013827 279 SGFKWAV-AADV----ESLAWDPHAEHSFVV-SLEDG------TIKGFDI-RTAKSDPDSTSQQSSFTLHAHDKAVCT-I 344 (436)
Q Consensus 279 ~~~~~~~-~~~i----~~~~~~~~~~~~~~~-~~~dg------~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~v~~-~ 344 (436)
......+ ...+ ..++|+|+|..+++. +..++ .|.+||+ ..... .....+..+...+.. +
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-------~~~~~l~~~~~~~~~~~ 365 (723)
T 1xfd_A 293 TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN-------DNIQSITSGDWDVTKIL 365 (723)
T ss_dssp EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS-------CCCCBSCCSSSCEEEEE
T ss_pred eEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc-------cceeEeecCCeEEEeee
Confidence 5433332 2333 378999999766665 56677 5667773 33310 002222223334444 6
Q ss_pred EecCCCCCEEEEEeC-C--CcEEEEECCCCCceeEEeeCC---CCCcEEEEEEcCCCCcEEEEEeCCC--cEEEEeCCCC
Q 013827 345 SYNPLVPNLLATGST-D--KMVKLWDLSNNQPSCIASRNP---KAGAVFSVAFSEDSPFVLAIGGSKG--KLEIWDTLSD 416 (436)
Q Consensus 345 ~~~p~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~ 416 (436)
+|+|++ +.|+..+. + +.+++|++..........+.. |...+..++|+|+|+++++..+..+ ...+++..++
T Consensus 366 ~~spdg-~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~ 444 (723)
T 1xfd_A 366 AYDEKG-NKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDK 444 (723)
T ss_dssp EEETTT-TEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTC
T ss_pred EEcCCC-CEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCC
Confidence 999999 66665554 4 789999986532111222332 5567889999999997555554443 2344555444
Q ss_pred c
Q 013827 417 A 417 (436)
Q Consensus 417 ~ 417 (436)
+
T Consensus 445 ~ 445 (723)
T 1xfd_A 445 K 445 (723)
T ss_dssp C
T ss_pred C
Confidence 4
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=2e-23 Score=189.86 Aligned_cols=248 Identities=9% Similarity=0.100 Sum_probs=166.7
Q ss_pred cCcceeecccCCCCCCCCCcEEEEeeCC-CcEEEEeCC--CCCCCcceeeecccchhhhhhcccCCCcccccccccCccc
Q 013827 125 AFPLCMAWLDCPLKDREKGNFMAVGSME-PAIEIWDLD--VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD 201 (436)
Q Consensus 125 ~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 201 (436)
..+.+++| +|++++|++++.+ +.|.+|+++ ++.... ...+..+ .
T Consensus 38 ~~~~~~~~-------spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~-------------------------~~~~~~~-~ 84 (343)
T 1ri6_A 38 GQVQPMVV-------SPDKRYLYVGVRPEFRVLAYRIAPDDGALTF-------------------------AAESALP-G 84 (343)
T ss_dssp SCCCCEEE-------CTTSSEEEEEETTTTEEEEEEECTTTCCEEE-------------------------EEEEECS-S
T ss_pred CCCceEEE-------CCCCCEEEEeecCCCeEEEEEecCCCCceee-------------------------ccccccC-C
Confidence 34456666 8999999988876 999999997 222111 0111122 3
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCC---CCeEEEEEcccCCCeEEEEEcCCCCCEEEEEE-CCCcEEEEecCCCC
Q 013827 202 SVLGLAWNKEFRNILASASADKQVKIWDVA---AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-FDRSVVMKDARIST 277 (436)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~ 277 (436)
.+..++|+|+|..+++++..++.|.+||+. ..+....+.. ...+.+++|+|++ ..+++++ .++.|.+||+.+..
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~ 162 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDN-RTLWVPALKQDRICLFTVSDDG 162 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTS
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCC-CEEEEecCCCCEEEEEEecCCC
Confidence 788999999975344444558899999994 3344555553 3468899999999 6666666 89999999998733
Q ss_pred Cccce-----E-eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec------cCCCeEEEE
Q 013827 278 HSGFK-----W-AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA------HDKAVCTIS 345 (436)
Q Consensus 278 ~~~~~-----~-~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~ 345 (436)
..... . .....+..++|+|++..+++++..++.|.+|++...... ......... ....+..++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~i~ 237 (343)
T 1ri6_A 163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN-----IECVQTLDMMPENFSDTRWAADIH 237 (343)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC-----CEEEEEEECSCTTCCSCCCEEEEE
T ss_pred ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc-----EEEEeeccccCccccccCCccceE
Confidence 22211 1 123468899999998656666678999999999642110 011122221 123566899
Q ss_pred ecCCCCCEEE-EEeCCCcEEEEECC--CCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 346 YNPLVPNLLA-TGSTDKMVKLWDLS--NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 346 ~~p~~~~~l~-~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
|+|++ .+|+ ++..++.|.+||+. ++....+.....+.. +..++|+|+|+++++++..++.|.+|++.
T Consensus 238 ~s~dg-~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 238 ITPDG-RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp ECTTS-SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred ECCCC-CEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 99999 5555 55579999999998 333334444444443 88999999999655544478999999554
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=9.6e-24 Score=212.30 Aligned_cols=351 Identities=11% Similarity=0.074 Sum_probs=218.5
Q ss_pred Hhhcccceeeec-----cC-CC-----Ccceeeecceeeccccccce------eccCCCCCCcccCCCCCCcccccccee
Q 013827 19 LYHSCFRCHKIS-----NA-SN-----TSSIWLISGVEIFGKGLGDL------YYASNQMDPYLKDKDDEDSEDLEDMTI 81 (436)
Q Consensus 19 ~~~~~~~~~~~~-----~~-~~-----t~~~w~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~ 81 (436)
.+....|+|+++ +. |+ ++.+|+++..+......... .....+ ..............|.+++|
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEE-KARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCCCEE
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchh-hhhhhhhhhccccCcceeEE
Confidence 355678999887 44 66 89999987654321111000 000000 00000000011245899999
Q ss_pred ccCCceEEEEEecCCcceeEEEEEecCCC---CCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEE
Q 013827 82 NPNDAVIVCARNEDDVSHLEVYILEESDG---GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 158 (436)
Q Consensus 82 sp~~~~l~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw 158 (436)
||||++|+++.. + .|++|+...+ ....+.. + ...+.++.| ||||++||.++ ++.|++|
T Consensus 117 SpDg~~l~~~~~-~-----~i~~~d~~~~~~~~~~~l~~-~----~~~~~~~~~-------SPDG~~la~~~-~~~i~~~ 177 (741)
T 2ecf_A 117 SPDAQRLLFPLG-G-----ELYLYDLKQEGKAAVRQLTH-G----EGFATDAKL-------SPKGGFVSFIR-GRNLWVI 177 (741)
T ss_dssp CTTSSEEEEEET-T-----EEEEEESSSCSTTSCCBCCC-S----SSCEEEEEE-------CTTSSEEEEEE-TTEEEEE
T ss_pred CCCCCEEEEEeC-C-----cEEEEECCCCCcceEEEccc-C----CcccccccC-------CCCCCEEEEEe-CCcEEEE
Confidence 999999999875 3 8888887765 2222221 1 122345666 99999999988 5699999
Q ss_pred eCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCC---------------
Q 013827 159 DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK--------------- 223 (436)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg--------------- 223 (436)
|+.+++....... +. .. . ...............+.+++|+|+|. .|++++.|+
T Consensus 178 d~~~g~~~~~~~~-~~-~~---~------~~g~~~~v~~~~~~~~~~~~~SpDg~-~l~~~~~d~~~~~~~~~~~~~p~~ 245 (741)
T 2ecf_A 178 DLASGRQMQLTAD-GS-TT---I------GNGIAEFVADEEMDRHTGYWWAPDDS-AIAYARIDESPVPVQKRYEVYADR 245 (741)
T ss_dssp ETTTTEEEECCCC-CC-SS---E------EESCCCHHHHHHSCCCCSEEECTTSS-CEEEEEEECTTSCEEEEEEECSSC
T ss_pred ecCCCCEEEeccC-Cc-cc---e------eccccceeeeeccccccceEECCCCC-EEEEEEEcCCCCceEecCCCCCCc
Confidence 9986543211000 00 00 0 00000000000112358899999985 777776665
Q ss_pred ------------------cEEEEeCCC-CeEEEEEc--ccCCCeEEEEEcCCCCCEEEEEEC-----CCcEEEEecCCCC
Q 013827 224 ------------------QVKIWDVAA-GKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSF-----DRSVVMKDARIST 277 (436)
Q Consensus 224 ------------------~v~vwd~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~-----d~~i~~wd~~~~~ 277 (436)
.|++||+.+ ++...... .|...+..++| |+| ..|++++. +..|.+||+.++.
T Consensus 246 ~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g~ 323 (741)
T 2ecf_A 246 TDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASNQ 323 (741)
T ss_dssp EEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTCC
T ss_pred ccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCCc
Confidence 789999988 77554432 47778999999 999 66666553 5679999999877
Q ss_pred CccceEeeeC----CeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEE-EecCCCCC
Q 013827 278 HSGFKWAVAA----DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI-SYNPLVPN 352 (436)
Q Consensus 278 ~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~ 352 (436)
.......+.. .+..++|+|++. +++++..+|.+++|.+... .. ...+..+...+..+ .|+|++..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~--------~~-~~~l~~~~~~v~~~~~~s~dg~~ 393 (741)
T 2ecf_A 324 QRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSK--------GK-AAALTHGNWSVDELLAVDEKAGL 393 (741)
T ss_dssp EEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSS--------SC-EEESCCSSSCEEEEEEEETTTTE
T ss_pred eEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCC--------CC-eeeeeecceEEEeEeEEeCCCCE
Confidence 6554433332 456899999985 8888999998888877633 13 55666777788887 59999943
Q ss_pred EEEEEeCCC--cEEEEECCC-CCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCC---CcEEEEeCCCC
Q 013827 353 LLATGSTDK--MVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK---GKLEIWDTLSD 416 (436)
Q Consensus 353 ~l~~~~~d~--~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~ 416 (436)
++++++.++ .++||++.. +. ....+.. ...+..++|+|||++++++.+.. ..+.+|+...+
T Consensus 394 l~~~~~~~~~~~~~l~~~~~~g~--~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 394 AYFRAGIESARESQIYAVPLQGG--QPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EEEEECSSCTTCBEEEEEETTCC--CCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred EEEEEeCCCCceEEEEEEEcCCC--Ceeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 445566565 899998864 32 1223333 45688999999999755554443 46889987543
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=1.7e-22 Score=183.68 Aligned_cols=298 Identities=10% Similarity=0.101 Sum_probs=186.4
Q ss_pred cCCCCcceeeecc-eeeccccccceeccCCCCCCcccCCCCCCccccccceeccCCceEEEEEecCCcceeEEEEEecC-
Q 013827 31 NASNTSSIWLISG-VEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEES- 108 (436)
Q Consensus 31 ~~~~t~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~- 108 (436)
+.|+++++|+++. ..+ ..... ..+...+..++|+|++++|+++..++ . .|.+|+..
T Consensus 12 ~~~~~v~~~~~~~~~~~---------------~~~~~---~~~~~~~~~~~~spdg~~l~~~~~~~--~--~v~~~~~~~ 69 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGAL---------------TLTQV---VDVPGQVQPMVVSPDKRYLYVGVRPE--F--RVLAYRIAP 69 (343)
T ss_dssp GGGTEEEEEEECTTSCE---------------EEEEE---EECSSCCCCEEECTTSSEEEEEETTT--T--EEEEEEECT
T ss_pred CCCCeEEEEEECCCCcE---------------EEeee---EecCCCCceEEECCCCCEEEEeecCC--C--eEEEEEecC
Confidence 5689999998852 111 00000 12345688899999999988887753 1 55555543
Q ss_pred -CCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeC-CCcEEEEeCCCCCCCcceeeecccchhhhhhcccC
Q 013827 109 -DGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKK 186 (436)
Q Consensus 109 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (436)
.+ .+...........+.+++| +|++++|++++. ++.|.+||+..+....
T Consensus 70 ~~~---~~~~~~~~~~~~~~~~~~~-------s~dg~~l~~~~~~~~~i~~~d~~~~~~~~------------------- 120 (343)
T 1ri6_A 70 DDG---ALTFAAESALPGSLTHIST-------DHQGQFVFVGSYNAGNVSVTRLEDGLPVG------------------- 120 (343)
T ss_dssp TTC---CEEEEEEEECSSCCSEEEE-------CTTSSEEEEEETTTTEEEEEEEETTEEEE-------------------
T ss_pred CCC---ceeeccccccCCCCcEEEE-------cCCCCEEEEEecCCCeEEEEECCCCcccc-------------------
Confidence 33 2211112222234556666 899998877664 7899999985211111
Q ss_pred CCcccccccccCcccceeEEEecCCCCcEEEEEe-CCCcEEEEeCCC-CeEEE----EEcc-cCCCeEEEEEcCCCCCEE
Q 013827 187 GKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-ADKQVKIWDVAA-GKCNL----TLEH-HTDKVQAVAWNHHSPQIL 259 (436)
Q Consensus 187 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~v~vwd~~~-~~~~~----~~~~-~~~~v~~~~~~~~~~~~l 259 (436)
....+. ....+.+++|+|+|. ++++++ .++.|.+||+.+ ++... .+.. ....+..++|+|++ .++
T Consensus 121 -----~~~~~~-~~~~~~~~~~s~dg~-~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg-~~l 192 (343)
T 1ri6_A 121 -----VVDVVE-GLDGCHSANISPDNR-TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE-QYA 192 (343)
T ss_dssp -----EEEEEC-CCTTBCCCEECTTSS-EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS-SEE
T ss_pred -----cccccc-CCCCceEEEECCCCC-EEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCC-CEE
Confidence 111111 234588999999975 555555 899999999987 64432 2222 34578899999999 555
Q ss_pred -EEEECCCcEEEEecCCCCCccc-eEe---e------eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 013827 260 -LSGSFDRSVVMKDARISTHSGF-KWA---V------AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQ 328 (436)
Q Consensus 260 -~s~~~d~~i~~wd~~~~~~~~~-~~~---~------~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~ 328 (436)
+++..++.|.+||+........ ... . ...+..++|+|++..+++++..++.|.+||+..... ..
T Consensus 193 ~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~-----~~ 267 (343)
T 1ri6_A 193 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS-----VL 267 (343)
T ss_dssp EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC-----CE
T ss_pred EEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC-----ce
Confidence 5555889999999964221110 111 1 224668999999866666777899999999983210 01
Q ss_pred cccEEEeccCCCeEEEEecCCCCCEEEEEe-CCCcEEEEEC--CCCCceeEEeeCCCCCcEEEEEEcCCC
Q 013827 329 QSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDL--SNNQPSCIASRNPKAGAVFSVAFSEDS 395 (436)
Q Consensus 329 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~d~~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~ 395 (436)
..+..+..+.. +..++|+|++ .+|++++ .++.|.+|++ .+++...+..+... ....+++|.|+.
T Consensus 268 ~~~~~~~~~~~-~~~~~~s~dg-~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~ 334 (343)
T 1ri6_A 268 SKEGFQPTETQ-PRGFNVDHSG-KYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHE 334 (343)
T ss_dssp EEEEEEECSSS-CCCEEECTTS-SEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC
T ss_pred EEeeeecCCCc-cceEEECCCC-CEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEccc
Confidence 33344444444 8899999999 7777766 6899999954 45554444444432 345567777654
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=3.8e-22 Score=182.19 Aligned_cols=286 Identities=11% Similarity=0.049 Sum_probs=196.1
Q ss_pred ccccccceeccCCceEEEEEecCC--cceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEE-Ee
Q 013827 73 SEDLEDMTINPNDAVIVCARNEDD--VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA-VG 149 (436)
Q Consensus 73 ~~~v~~~~~sp~~~~l~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~g 149 (436)
...+..++|+|+++.++++...+. .....|++|+....+...... ....+..+.| +|++++++ +.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-----~~~~~~~~~~-------s~dg~~l~v~~ 107 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH-----NDLKPFGATI-------NNTTQTLWFGN 107 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE-----ESSCCCSEEE-------ETTTTEEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe-----cCCCcceEEE-------CCCCCEEEEEe
Confidence 345788999999999888875421 012478889887652221111 2223445555 89998555 45
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEe--CCCcEEE
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS--ADKQVKI 227 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~--~dg~v~v 227 (436)
..++.|.+||..+++.......... ..........+.+++|+|+|. .+++++ .++.|.+
T Consensus 108 ~~~~~v~~~d~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 108 TVNSAVTAIDAKTGEVKGRLVLDDR------------------KRTEEVRPLQPRELVADDATN-TVYISGIGKESVIWV 168 (353)
T ss_dssp TTTTEEEEEETTTCCEEEEEESCCC------------------CCCSSCCCCEEEEEEEETTTT-EEEEEEESSSCEEEE
T ss_pred cCCCEEEEEeCCCCeeEEEEecCCC------------------ccccccCCCCCceEEECCCCC-EEEEEecCCCceEEE
Confidence 5579999999987665433211000 000000112378899999976 455444 5789999
Q ss_pred EeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEe----eeCCeeEEEeCCCCCcEEE
Q 013827 228 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA----VAADVESLAWDPHAEHSFV 303 (436)
Q Consensus 228 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~ 303 (436)
||+.+++.+..+..+...+.+++|+|++ ..+++++.++.|.+||+.+.+....... +...+..++|+|++..+++
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 247 (353)
T 3vgz_A 169 VDGGNIKLKTAIQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFI 247 (353)
T ss_dssp EETTTTEEEEEECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEE
T ss_pred EcCCCCceEEEecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEE
Confidence 9999999988887666678899999999 7888888999999999988766543332 3445788999999866666
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCC
Q 013827 304 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA 383 (436)
Q Consensus 304 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 383 (436)
+...++.|.+||+.++ +.+..+.... ...++|+|++..++++...++.|.+||..+++.. ..+.. .
T Consensus 248 ~~~~~~~v~~~d~~~~---------~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~--~~~~~-~ 313 (353)
T 3vgz_A 248 TDSKAAEVLVVDTRNG---------NILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV--KTFDT-P 313 (353)
T ss_dssp EESSSSEEEEEETTTC---------CEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEE--EEEEC-C
T ss_pred EeCCCCEEEEEECCCC---------cEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEE--EEEec-C
Confidence 6667799999999877 4344444332 2579999999334555557999999999988743 33333 3
Q ss_pred CcEEEEEEcCCCCcEEEEEeC
Q 013827 384 GAVFSVAFSEDSPFVLAIGGS 404 (436)
Q Consensus 384 ~~v~~~~~~~~~~~~l~s~~~ 404 (436)
..+.+++|+|+|++++++...
T Consensus 314 ~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 314 THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp SEEEEEEECTTSCEEEEEEEC
T ss_pred CCCCeEEEcCCCCEEEEEEcc
Confidence 368999999999965555443
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=1.3e-22 Score=202.93 Aligned_cols=296 Identities=13% Similarity=0.088 Sum_probs=196.4
Q ss_pred cccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCC
Q 013827 74 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP 153 (436)
Q Consensus 74 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 153 (436)
..|.+++|||| ..++++. ++ .+++|+...++...+. .+ .....+++| ||||++||++ .++
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~-----~i~~~d~~~~~~~~l~-~~----~~~~~~~~~-------SpdG~~la~~-~~~ 141 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QG-----GLVGFDMLARKVTYLF-DT----NEETASLDF-------SPVGDRVAYV-RNH 141 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TT-----EEEEEETTTTEEEEEE-CC----TTCCTTCEE-------CTTSSEEEEE-ETT
T ss_pred cCceeEEECCC-CeEEEEE-CC-----EEEEEECCCCceEEcc-CC----cccccCCcC-------CCCCCEEEEE-ECC
Confidence 46999999999 6665553 34 8888988765221111 11 122234445 9999999995 689
Q ss_pred cEEEEeCCC-----CCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEe--------
Q 013827 154 AIEIWDLDV-----IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-------- 220 (436)
Q Consensus 154 ~i~vw~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-------- 220 (436)
.|++|++.+ ++....... +. .. ... ... ....+...+.+++|+|+|. +|++++
T Consensus 142 ~i~v~~~~~~~~~~g~~~~~~~~-~~-~~------~~~---g~~--~~~ee~~~~~~~~~SpDg~-~la~~~~d~~~~~~ 207 (706)
T 2z3z_A 142 NLYIARGGKLGEGMSRAIAVTID-GT-ET------LVY---GQA--VHQREFGIEKGTFWSPKGS-CLAFYRMDQSMVKP 207 (706)
T ss_dssp EEEEEECBCTTSCCCCCEESCSC-CB-TT------EEE---SSC--CGGGCTTCCCSEEECTTSS-EEEEEEEECTTSCC
T ss_pred eEEEEecCcccccCCCcEEeccC-CC-CC------eEc---ccc--hhhhhcCCCceEEECCCCC-EEEEEEECCCCCce
Confidence 999999986 443221000 00 00 000 000 1112233468999999974 777776
Q ss_pred -------------------------CCCcEEEEeCCCCeEEEEEc--ccCCCeEEEEEcCCCCCEEEEEECCC-----cE
Q 013827 221 -------------------------ADKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDR-----SV 268 (436)
Q Consensus 221 -------------------------~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i 268 (436)
.+..|++||+.+++...... .|...+.+++|+|+| +.|++++.++ .|
T Consensus 208 ~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v 286 (706)
T 2z3z_A 208 TPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKV 286 (706)
T ss_dssp EEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEE
T ss_pred EEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEE
Confidence 44679999999887654442 466789999999999 7788877775 89
Q ss_pred EEEecCCCCCccceEeeeC-----CeeEEEeCC--CCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCe
Q 013827 269 VMKDARISTHSGFKWAVAA-----DVESLAWDP--HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 341 (436)
Q Consensus 269 ~~wd~~~~~~~~~~~~~~~-----~i~~~~~~~--~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 341 (436)
.+||+.++........... .+..++|+| ++ .+++++..++.+++|++... ......+..+...+
T Consensus 287 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~--------~~~~~~l~~~~~~v 357 (706)
T 2z3z_A 287 NAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTT--------GRLIRQVTKGEWEV 357 (706)
T ss_dssp EEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETT--------SCEEEECCCSSSCE
T ss_pred EEEECCCCceeeEEEEccCCCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECC--------CCEEEecCCCCeEE
Confidence 9999988733332322211 246789999 88 58888889999999987632 13455666677778
Q ss_pred EE-EEecCCCCCEEEEEeCCC----cEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCC---CcEEEEeC
Q 013827 342 CT-ISYNPLVPNLLATGSTDK----MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK---GKLEIWDT 413 (436)
Q Consensus 342 ~~-~~~~p~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~ 413 (436)
.. ++|+|++..++++++.++ .|+.||+.+++. ..+. +...+.+++|+|||++++++++.+ +.|++||+
T Consensus 358 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~---~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 358 TNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT---KDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp EEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC---EESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred EeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc---eecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence 76 799999943444555554 677778777652 2222 556799999999999755544444 56999999
Q ss_pred CCCc
Q 013827 414 LSDA 417 (436)
Q Consensus 414 ~~~~ 417 (436)
.+++
T Consensus 434 ~~~~ 437 (706)
T 2z3z_A 434 GKGS 437 (706)
T ss_dssp SSCE
T ss_pred CCCe
Confidence 8876
No 139
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=6.3e-22 Score=180.47 Aligned_cols=277 Identities=11% Similarity=0.107 Sum_probs=178.7
Q ss_pred eeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeC---CCcEEEEeCCCCCCCcceeeeccc
Q 013827 99 HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM---EPAIEIWDLDVIDEVQPHVILGGI 175 (436)
Q Consensus 99 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i~vw~~~~~~~~~~~~~~~~~ 175 (436)
.+.+|.++...+ .+...........+..++| +|||+ |++++. ++.|.+|++.+++...
T Consensus 17 ~i~v~~~d~~tg---~~~~~~~~~~~~~p~~~a~-------spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~-------- 77 (347)
T 3hfq_A 17 GIYQGTLDTTAK---TLTNDGLLAATQNPTYLAL-------SAKDC-LYSVDKEDDEGGIAAWQIDGQTAHK-------- 77 (347)
T ss_dssp EEEEEEEETTTT---EEEEEEEEEECSCCCCEEE-------CTTCE-EEEEEEETTEEEEEEEEEETTEEEE--------
T ss_pred CEEEEEEcCCCC---eEEEeeeeeccCCcceEEE-------ccCCe-EEEEEecCCCceEEEEEecCCcEEE--------
Confidence 457777777654 2221111111223344555 99999 554443 6899999996433211
Q ss_pred chhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEe-CCCcEEEEeCCC-C--eEEEEEcc---------c
Q 013827 176 DEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-ADKQVKIWDVAA-G--KCNLTLEH---------H 242 (436)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~v~vwd~~~-~--~~~~~~~~---------~ 242 (436)
...+..+...+..++|+|+|. +|++++ .++.|.+|++.. + +.+..+.. +
T Consensus 78 -----------------~~~~~~~~~~p~~~a~spdg~-~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~ 139 (347)
T 3hfq_A 78 -----------------LNTVVAPGTPPAYVAVDEARQ-LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQD 139 (347)
T ss_dssp -----------------EEEEEEESCCCSEEEEETTTT-EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCS
T ss_pred -----------------eeeeecCCCCCEEEEECCCCC-EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCcccc
Confidence 111224667889999999975 666666 789999999963 2 23333321 1
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE----eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 243 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 318 (436)
Q Consensus 243 ~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 318 (436)
...+.+++|+|++ +++++...++.|.+||+.......... .....+..++|+|++..+++++..++.+.+|++..
T Consensus 140 ~~~~~~~~~spdg-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 140 GSHIHYTDLTPDN-RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT 218 (347)
T ss_dssp SCCEEEEEECTTS-CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCceEEEECCCC-cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 2248899999999 577777778899999998333222111 12236788999999865667778899999999875
Q ss_pred CCCCCCCCCCcccEEEeccC------CCeEEEEecCCCCCEE-EEEeCCCcEEEEECCC-CCceeEEeeCCCCCcEEEEE
Q 013827 319 AKSDPDSTSQQSSFTLHAHD------KAVCTISYNPLVPNLL-ATGSTDKMVKLWDLSN-NQPSCIASRNPKAGAVFSVA 390 (436)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~------~~v~~~~~~p~~~~~l-~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~ 390 (436)
... .......+.... ..+..++|+|++ ++| ++...++.|.+|++.. +....+.....+...+..++
T Consensus 219 ~~g-----~~~~~~~~~~~~~~~~~~~~~~~i~~spdG-~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~ 292 (347)
T 3hfq_A 219 QTG-----AFTQLGIVKTIPADYTAHNGAAAIRLSHDG-HFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFD 292 (347)
T ss_dssp TTT-----EEEEEEEEESSCTTCCSCCEEEEEEECTTS-CEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEE
T ss_pred CCC-----ceEEeeeeeecCCCCCCCCcceeEEECCCC-CEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEE
Confidence 210 011122232222 348889999999 655 6667789999999973 23334455555556688999
Q ss_pred EcCCCCcEEEEEeCCCcEEEE--eCCCCccc
Q 013827 391 FSEDSPFVLAIGGSKGKLEIW--DTLSDAGI 419 (436)
Q Consensus 391 ~~~~~~~~l~s~~~dg~i~iw--d~~~~~~~ 419 (436)
|+|+|++++++...++.|.+| |..+++..
T Consensus 293 ~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 293 LDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred ECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 999999655544456899999 54555543
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=6.9e-23 Score=181.96 Aligned_cols=253 Identities=12% Similarity=0.068 Sum_probs=178.4
Q ss_pred eEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCC-CCCCcceeeecccchh
Q 013827 100 LEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDV-IDEVQPHVILGGIDEE 178 (436)
Q Consensus 100 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~ 178 (436)
..|++|+........+. .| ...+.+++| +|++++|++++ ++.|++||+.+ ++....
T Consensus 22 ~~i~~~d~~~~~~~~~~-~~----~~~v~~~~~-------spdg~~l~~~~-~~~i~~~d~~~~~~~~~~---------- 78 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVW-QT----PELFEAPNW-------SPDGKYLLLNS-EGLLYRLSLAGDPSPEKV---------- 78 (297)
T ss_dssp EEEEEEETTTTEEEEEE-EE----SSCCEEEEE-------CTTSSEEEEEE-TTEEEEEESSSCCSCEEC----------
T ss_pred eeEEEEeCCCCceeeec-cC----CcceEeeEE-------CCCCCEEEEEc-CCeEEEEeCCCCCCceEe----------
Confidence 37888887765322222 22 233456777 99999999987 88999999986 443221
Q ss_pred hhhhcccCCCcccccccccCc-ccceeEEEecCCCCcEEEEEe--CCCcEEE--EeCCCCeEEEEEcccCCCeEEEEEcC
Q 013827 179 KKKKKSKKGKKSSIKYKKGSH-TDSVLGLAWNKEFRNILASAS--ADKQVKI--WDVAAGKCNLTLEHHTDKVQAVAWNH 253 (436)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~--~dg~v~v--wd~~~~~~~~~~~~~~~~v~~~~~~~ 253 (436)
...| ...+.+++|+|+| .+|++++ .++...| +++.+++ ...+..+ ..+..++|+|
T Consensus 79 -----------------~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~sp 138 (297)
T 2ojh_A 79 -----------------DTGFATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSP 138 (297)
T ss_dssp -----------------CCTTCCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECT
T ss_pred -----------------ccccccccccceEECCCC-CEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECC
Confidence 1133 4678999999997 4788887 3344455 4555554 4445433 3589999999
Q ss_pred CCCCEEEEEECCCcEEEEecCCCC-CccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccE
Q 013827 254 HSPQILLSGSFDRSVVMKDARIST-HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF 332 (436)
Q Consensus 254 ~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 332 (436)
++..++++++.++.+.+|++.... .......+...+.+++|+|++..+++++..++.+++|++... .....
T Consensus 139 dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~--------~~~~~ 210 (297)
T 2ojh_A 139 DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD--------GSSVE 210 (297)
T ss_dssp TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT--------SSCEE
T ss_pred CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCC--------CCCcE
Confidence 994444488899999999975432 223334566789999999998655555557999999998633 13356
Q ss_pred EEeccCCCeEEEEecCCCCCEEEEEeCC-----------CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEE
Q 013827 333 TLHAHDKAVCTISYNPLVPNLLATGSTD-----------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAI 401 (436)
Q Consensus 333 ~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 401 (436)
.+..|...+..++|+|++ .+|++++.+ +.|++||+.+++...+.....|...+..++|+|++++ |++
T Consensus 211 ~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-l~~ 288 (297)
T 2ojh_A 211 RITDSAYGDWFPHPSPSG-DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDE-FAY 288 (297)
T ss_dssp ECCCCSEEEEEEEECTTS-SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSE-EEE
T ss_pred EEecCCcccCCeEECCCC-CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCE-EEE
Confidence 667777889999999999 777777665 5699999998876566666667778999999999996 544
Q ss_pred EeCC
Q 013827 402 GGSK 405 (436)
Q Consensus 402 ~~~d 405 (436)
++.+
T Consensus 289 ~~~~ 292 (297)
T 2ojh_A 289 VRYF 292 (297)
T ss_dssp EEEC
T ss_pred EEec
Confidence 4443
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=1.7e-22 Score=202.71 Aligned_cols=290 Identities=9% Similarity=0.015 Sum_probs=190.7
Q ss_pred ccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCC--
Q 013827 75 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME-- 152 (436)
Q Consensus 75 ~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-- 152 (436)
.+.+++|+|||+++++ +.++ .|++|+...+....+..++... ...+.+++| ||||++||+++.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg-----~i~~~d~~~g~~~~~~~~~~~~-~~~v~~~~~-------SpDg~~l~~~~~~~~ 83 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKG-----TVRLWNVETNTSTVLIEGKKIE-SLRAIRYEI-------SPDREYALFSYNVEP 83 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSS-----CEEEBCGGGCCCEEEECTTTTT-TTTCSEEEE-------CTTSSEEEEEESCCC
T ss_pred cccccEEcCCCcEEEE-eCCC-----CEEEEECCCCcEEEEecccccc-ccccceEEE-------CCCCCEEEEEecCcc
Confidence 4788999999997765 4444 7888887766443343333211 011334555 9999999999874
Q ss_pred -------CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcE
Q 013827 153 -------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV 225 (436)
Q Consensus 153 -------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 225 (436)
+.|.+||+.+++... .....+|...+..++|+|+|. .||.++. +.|
T Consensus 84 ~~~~~~~~~i~~~d~~~~~~~~-------------------------l~~~~~~~~~~~~~~~SPdG~-~la~~~~-~~i 136 (723)
T 1xfd_A 84 IYQHSYTGYYVLSKIPHGDPQS-------------------------LDPPEVSNAKLQYAGWGPKGQ-QLIFIFE-NNI 136 (723)
T ss_dssp CSSSCCCSEEEEEESSSCCCEE-------------------------CCCTTCCSCCCSBCCBCSSTT-CEEEEET-TEE
T ss_pred ceeecceeeEEEEECCCCceEe-------------------------ccCCccccccccccEECCCCC-EEEEEEC-CeE
Confidence 778899998765411 011224666689999999985 7777775 799
Q ss_pred EEEeCCCCeEEEEEcccCCCe------------------EEEEEcCCCCCEEEEEECCC---------------------
Q 013827 226 KIWDVAAGKCNLTLEHHTDKV------------------QAVAWNHHSPQILLSGSFDR--------------------- 266 (436)
Q Consensus 226 ~vwd~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~~~l~s~~~d~--------------------- 266 (436)
++||+.+++.......+...+ .+++|+|+| +.|++++.++
T Consensus 137 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (723)
T 1xfd_A 137 YYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKP 215 (723)
T ss_dssp EEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEE
T ss_pred EEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCccee
Confidence 999999888766655444333 789999999 7888777553
Q ss_pred -------------cEEEEecCCCCCccceEee------eCCeeEEEeCCCCCcEEEEEeC----CCcEEEEeCCCCCCCC
Q 013827 267 -------------SVVMKDARISTHSGFKWAV------AADVESLAWDPHAEHSFVVSLE----DGTIKGFDIRTAKSDP 323 (436)
Q Consensus 267 -------------~i~~wd~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~----dg~i~i~d~~~~~~~~ 323 (436)
.|.+||+.+.........+ ...+..++|+|+|. ++++... +..|.+||+.++
T Consensus 216 ~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~i~~~d~~~g---- 290 (723)
T 1xfd_A 216 YHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRAQNVSILTLCDATTG---- 290 (723)
T ss_dssp EECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETTSCEEEEEEEETTTC----
T ss_pred ccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCe-EEEEEEcCCCCeEEEEEEeCCCC----
Confidence 7999999877643222222 45688999999985 5655432 357999999876
Q ss_pred CCCCCcccEEEec-cCCCe----EEEEecCCCCCEEEE-EeCCC------cEEEEE-CCCCCceeEEeeCCCCCcEEE-E
Q 013827 324 DSTSQQSSFTLHA-HDKAV----CTISYNPLVPNLLAT-GSTDK------MVKLWD-LSNNQPSCIASRNPKAGAVFS-V 389 (436)
Q Consensus 324 ~~~~~~~~~~~~~-~~~~v----~~~~~~p~~~~~l~~-~~~d~------~i~iwd-~~~~~~~~~~~~~~~~~~v~~-~ 389 (436)
+....+.. +...+ ..++|+|+|..++++ +..++ .|++|| ...++......+..+...+.. +
T Consensus 291 -----~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~ 365 (723)
T 1xfd_A 291 -----VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKIL 365 (723)
T ss_dssp -----CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEE
T ss_pred -----cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeee
Confidence 33333332 33333 378999999444444 55677 577777 344330001222322334544 6
Q ss_pred EEcCCCCcEEEEEeCC--CcEEEEeCCCC
Q 013827 390 AFSEDSPFVLAIGGSK--GKLEIWDTLSD 416 (436)
Q Consensus 390 ~~~~~~~~~l~s~~~d--g~i~iwd~~~~ 416 (436)
+|+|||+.+++++..+ +.++||++...
T Consensus 366 ~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 366 AYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp EEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred EEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 9999999644455554 78999998643
No 142
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=2.1e-22 Score=209.45 Aligned_cols=286 Identities=9% Similarity=-0.002 Sum_probs=206.4
Q ss_pred Cccccccceec-cCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCc-CcceeecccCCCCCCCCCcEEEEe
Q 013827 72 DSEDLEDMTIN-PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPA-FPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 72 ~~~~v~~~~~s-p~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
+...+.+++|| |||+.|+++. ++ .+++|+........+. .+ +. ...++.| + ||+.|+++
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~-----~i~~~~~~~~~~~~~~-~~----~~~~~~~~~~-------s-dg~~l~~~ 354 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RG-----QAFIQDVSGTYVLKVP-EP----LRIRYVRRGG-------D-TKVAFIHG 354 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TT-----EEEEECTTSSBEEECS-CC----SCEEEEEECS-------S-SEEEEEEE
T ss_pred cccccceeeecCCCCCEEEEEE-cC-----EEEEEcCCCCceEEcc-CC----CcceEEeeeE-------c-CCCeEEEE
Confidence 45679999999 9999999887 33 7888887654211111 11 11 2233444 8 99999999
Q ss_pred eCCCcEE-EEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEE
Q 013827 150 SMEPAIE-IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 228 (436)
Q Consensus 150 ~~dg~i~-vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vw 228 (436)
+.++.+. +|++.+++.. .+.+|...+..++|+|+| .+|++++.++.|++|
T Consensus 355 s~~~~l~~~~d~~~~~~~----------------------------~l~~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~ 405 (1045)
T 1k32_A 355 TREGDFLGIYDYRTGKAE----------------------------KFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTV 405 (1045)
T ss_dssp ETTEEEEEEEETTTCCEE----------------------------ECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEE
T ss_pred ECCCceEEEEECCCCCce----------------------------EecCCccceeeeEECCCC-CEEEEECCCCeEEEE
Confidence 9888888 8898653221 122677889999999997 589999999999999
Q ss_pred eCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCC----------cEEEEecCCCCCccceEeeeCCeeEEEeCCCC
Q 013827 229 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR----------SVVMKDARISTHSGFKWAVAADVESLAWDPHA 298 (436)
Q Consensus 229 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~----------~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~ 298 (436)
|+.+++....+..|...+.+++|+|+| ++|++++.++ .|++||+.+++ ......+...+..++|+|+|
T Consensus 406 d~~tg~~~~~~~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG 483 (1045)
T 1k32_A 406 DLETGKPTVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADS 483 (1045)
T ss_dssp ETTTCCEEEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTS
T ss_pred ECCCCceEEeccCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCC
Confidence 999998887777899999999999999 7777776644 89999998765 33344566678889999998
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCC---------------------------------CC-CCCcccEEEeccCCCeEEE
Q 013827 299 EHSFVVSLEDGTIKGFDIRTAKSDP---------------------------------DS-TSQQSSFTLHAHDKAVCTI 344 (436)
Q Consensus 299 ~~~~~~~~~dg~i~i~d~~~~~~~~---------------------------------~~-~~~~~~~~~~~~~~~v~~~ 344 (436)
. .++.++.++....|+........ .. .....+..+..|...+..+
T Consensus 484 ~-~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~ 562 (1045)
T 1k32_A 484 K-NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI 562 (1045)
T ss_dssp C-EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEE
T ss_pred C-EEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhhe
Confidence 4 67777777777777654321100 00 0011234455577889999
Q ss_pred EecCCCCCEEEE-------------EeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 013827 345 SYNPLVPNLLAT-------------GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 411 (436)
Q Consensus 345 ~~~p~~~~~l~~-------------~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 411 (436)
.++|++ .++++ ......|++||+.+++...+. ..+..++|+|||++ |++++.+ .|++|
T Consensus 563 ~~s~dg-~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~-l~~~~~~-~i~~~ 633 (1045)
T 1k32_A 563 IPLESS-ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKT-VMVRKDD-GKIYT 633 (1045)
T ss_dssp EECSSE-EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCE-EEEEETT-SCEEE
T ss_pred EEcCCC-eEEEEecccCcccccccccCCCceEEEEECCCCcEEEee------cCcceEEECCCCCE-EEEEcCC-cEEEE
Confidence 999998 66664 123457889999888743222 46889999999996 6666655 89999
Q ss_pred eCCCCc
Q 013827 412 DTLSDA 417 (436)
Q Consensus 412 d~~~~~ 417 (436)
|+.+++
T Consensus 634 d~~~~~ 639 (1045)
T 1k32_A 634 FPLEKP 639 (1045)
T ss_dssp EESSCT
T ss_pred eCccCc
Confidence 998876
No 143
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=6.7e-22 Score=185.13 Aligned_cols=216 Identities=12% Similarity=0.108 Sum_probs=148.9
Q ss_pred ccccccceeccCCceEEEEEecCCcceeEEEEEecCCC--------CCCceeee---cccccCcCcceeecccCCCCCCC
Q 013827 73 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG--------GDPNLYVH---HHIIIPAFPLCMAWLDCPLKDRE 141 (436)
Q Consensus 73 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~--------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~ 141 (436)
...+..++++|++.++++++.++ +.+|..... ....+... .....+..+.+++| +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg------v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-------sp 102 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG------LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLAL-------SC 102 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE------EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEE-------CT
T ss_pred CCCccEEEEecCCCEEEEECCCE------EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEE-------cC
Confidence 34689999999999999987653 344332110 00011100 01122334567777 89
Q ss_pred CCcEEE----EeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEE
Q 013827 142 KGNFMA----VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 217 (436)
Q Consensus 142 ~~~~l~----~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 217 (436)
++++|| +|+.|+.|+|||+.+...... ...+.......+.+|...|.+++|+|++..+|+
T Consensus 103 dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~----------------~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~la 166 (434)
T 2oit_A 103 DNLTLSACMMSSEYGSIIAFFDVRTFSNEAK----------------QQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVA 166 (434)
T ss_dssp TSCEEEEEEEETTTEEEEEEEEHHHHHCTTC----------------SSCCCSEEEECCCSGGGSEEEEEECSSCTTEEE
T ss_pred CCCEEEEEEeccCCCceEEEEEccccccCCc----------------CCcceeeeeeccCCCCCceEEEEECCCCCCEEE
Confidence 999999 788999999999864310000 000011123345689999999999998557999
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEe-------eeCCee
Q 013827 218 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-------VAADVE 290 (436)
Q Consensus 218 s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-------~~~~i~ 290 (436)
+++.||+|++||++++.......+|...|.+++|+|+| .+|++|+.||.|++||++ ......... +...+.
T Consensus 167 s~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~ 244 (434)
T 2oit_A 167 VCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVL 244 (434)
T ss_dssp EEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEE
T ss_pred EEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEE
Confidence 99999999999999987776677788999999999998 899999999999999998 322221111 123789
Q ss_pred EEEeCCCCCcEEEEEeCCC------cEEEEeCCCC
Q 013827 291 SLAWDPHAEHSFVVSLEDG------TIKGFDIRTA 319 (436)
Q Consensus 291 ~~~~~~~~~~~~~~~~~dg------~i~i~d~~~~ 319 (436)
+++|++++..+++.+..+| .+++|++++.
T Consensus 245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 9999997633333344453 3899999875
No 144
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=8e-22 Score=178.51 Aligned_cols=243 Identities=9% Similarity=0.077 Sum_probs=174.4
Q ss_pred CCC-CcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 140 REK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 140 s~~-~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
.++ +..+++++.++.|.+||..+++..... ..+...+ .++|+|+|..++++
T Consensus 6 ~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~---------------------------~~~~~~~-~~~~s~dg~~l~~~ 57 (331)
T 3u4y_A 6 QTTSNFGIVVEQHLRRISFFSTDTLEILNQI---------------------------TLGYDFV-DTAITSDCSNVVVT 57 (331)
T ss_dssp -CCCCEEEEEEGGGTEEEEEETTTCCEEEEE---------------------------ECCCCEE-EEEECSSSCEEEEE
T ss_pred cCCCCEEEEEecCCCeEEEEeCcccceeeeE---------------------------EccCCcc-eEEEcCCCCEEEEE
Confidence 444 455778888999999999876554321 1234455 99999998644555
Q ss_pred EeCCCcEEEEeCCCCeE-EEEEcccCCCeEEEEEcCCCCCEEEEEECCC---cEEEEecCCCCCccceEeeeCCeeEEEe
Q 013827 219 ASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDR---SVVMKDARISTHSGFKWAVAADVESLAW 294 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~i~~~~~ 294 (436)
+..++.|.+||+.+++. ...+..+..+..+++|+|++ .+++++..++ .|.+||+.+.+... .......+..++|
T Consensus 58 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~ 135 (331)
T 3u4y_A 58 SDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFIS-TIPIPYDAVGIAI 135 (331)
T ss_dssp ESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEEE-EEECCTTEEEEEE
T ss_pred eCCCCeEEEEECCCCceeEEecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCCeEE-EEECCCCccceEE
Confidence 55589999999999887 77777666666669999999 7777555553 89999998876554 3445566899999
Q ss_pred CCCCCcEEEEEeCCCc-EEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc
Q 013827 295 DPHAEHSFVVSLEDGT-IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 373 (436)
Q Consensus 295 ~~~~~~~~~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~ 373 (436)
+|++..++++...++. |.+|++....... ............+..++|+|++..+++++..++.|.+||+.+++.
T Consensus 136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 136 SPNGNGLILIDRSSANTVRRFKIDADGVLF-----DTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp CTTSSCEEEEEETTTTEEEEEEECTTCCEE-----EEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred CCCCCEEEEEecCCCceEEEEEECCCCcEe-----ecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 9999767777777788 9999998542100 000122234456789999999933455555689999999998874
Q ss_pred -eeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 374 -SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 374 -~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
..+..+.. ...+..++|+|+|++++++...++.|.+||+.+++.
T Consensus 211 ~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 211 ITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp CEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred cceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 11333333 346788999999997666666688999999998876
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=1.4e-21 Score=178.43 Aligned_cols=239 Identities=12% Similarity=0.069 Sum_probs=178.9
Q ss_pred CCCCcEEEEeeC-------CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCC
Q 013827 140 REKGNFMAVGSM-------EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF 212 (436)
Q Consensus 140 s~~~~~l~~g~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 212 (436)
+|++++|++++. ++.|.+||..+++..... .....+..++|+|+|
T Consensus 49 s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~----------------------------~~~~~~~~~~~s~dg 100 (353)
T 3vgz_A 49 SQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI----------------------------HNDLKPFGATINNTT 100 (353)
T ss_dssp ETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEE----------------------------EESSCCCSEEEETTT
T ss_pred CCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEE----------------------------ecCCCcceEEECCCC
Confidence 899998888774 568999999876544322 123457889999998
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCC---------eEEEEEcCCCCCEEEEEE--CCCcEEEEecCCCCCccc
Q 013827 213 RNILASASADKQVKIWDVAAGKCNLTLEHHTDK---------VQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHSGF 281 (436)
Q Consensus 213 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~ 281 (436)
..++++...++.|.+||+.+++.+..+..+... +.++.|+|++ ..+++++ .++.|.+||+.+.+....
T Consensus 101 ~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~i~~~d~~~~~~~~~ 179 (353)
T 3vgz_A 101 QTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT-NTVYISGIGKESVIWVVDGGNIKLKTA 179 (353)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTT-TEEEEEEESSSCEEEEEETTTTEEEEE
T ss_pred CEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCC-CEEEEEecCCCceEEEEcCCCCceEEE
Confidence 656667777899999999999988887654322 7889999999 5555554 478899999988776553
Q ss_pred eEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec----cCCCeEEEEecCCCCCEEEEE
Q 013827 282 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA----HDKAVCTISYNPLVPNLLATG 357 (436)
Q Consensus 282 ~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~~l~~~ 357 (436)
.......+..++|+|++ ..++++..++.|.+||+.+. +....+.. +...+..++|+|++ ..++++
T Consensus 180 ~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~ 248 (353)
T 3vgz_A 180 IQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADN---------KILSRKKLLDDGKEHFFINISLDTAR-QRAFIT 248 (353)
T ss_dssp ECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTT---------EEEEEEECCCSSSCCCEEEEEEETTT-TEEEEE
T ss_pred ecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCC---------eEEEEEEcCCCCCCcccceEEECCCC-CEEEEE
Confidence 33345568899999988 46777888999999999887 43444443 45567889999999 555555
Q ss_pred e-CCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 358 S-TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 358 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
+ .++.|.+||..+++....... .. ...++|+|++++++++...++.|.+||+.+++.+...
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~~--~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVAA--PE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEEC--SS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eCCCCEEEEEECCCCcEEEEEEc--CC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 4 569999999998875333332 22 2569999999976776668999999999988876543
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=4.1e-22 Score=176.95 Aligned_cols=228 Identities=10% Similarity=0.024 Sum_probs=167.7
Q ss_pred EeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEE
Q 013827 148 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 227 (436)
Q Consensus 148 ~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~v 227 (436)
.++.++.|++||+.+++... +..|...|.+++|+|+| .+|++++ ++.|++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~----------------------------~~~~~~~v~~~~~spdg-~~l~~~~-~~~i~~ 66 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV----------------------------VWQTPELFEAPNWSPDG-KYLLLNS-EGLLYR 66 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE----------------------------EEEESSCCEEEEECTTS-SEEEEEE-TTEEEE
T ss_pred CCCcceeEEEEeCCCCceee----------------------------eccCCcceEeeEECCCC-CEEEEEc-CCeEEE
Confidence 34678999999997644321 33578899999999997 4787776 789999
Q ss_pred EeCCC-CeEEEEEccc-CCCeEEEEEcCCCCCEEEEEE--CCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEE
Q 013827 228 WDVAA-GKCNLTLEHH-TDKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFV 303 (436)
Q Consensus 228 wd~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 303 (436)
||+.+ ++.......+ ...+.+++|+|++ .+|++++ .++...+|.+...............+..++|+|++..+++
T Consensus 67 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 145 (297)
T 2ojh_A 67 LSLAGDPSPEKVDTGFATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTY 145 (297)
T ss_dssp EESSSCCSCEECCCTTCCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEE
T ss_pred EeCCCCCCceEeccccccccccceEECCCC-CEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEE
Confidence 99998 8776666555 4678999999999 7888888 3455666655432222223333445889999999866666
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEe-CCCcEEEEECC-CCCceeEEeeCC
Q 013827 304 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLS-NNQPSCIASRNP 381 (436)
Q Consensus 304 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~d~~i~iwd~~-~~~~~~~~~~~~ 381 (436)
++..++.+++|++.... .....+..+...+.+++|+|++ .+|+.++ .++.+++|++. ... ....+..
T Consensus 146 ~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~--~~~~~~~ 214 (297)
T 2ojh_A 146 CGIRDQVFDIYSMDIDS--------GVETRLTHGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGS--SVERITD 214 (297)
T ss_dssp EEEETTEEEEEEEETTT--------CCEEECCCSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSS--CEEECCC
T ss_pred EECCCCceEEEEEECCC--------CcceEcccCCCccccceECCCC-CEEEEEecCCCCccEEEECCCCC--CcEEEec
Confidence 88899999999975431 2245566777889999999999 6666555 58999999886 333 3445666
Q ss_pred CCCcEEEEEEcCCCCcEEEEEeCC-----------CcEEEEeCCCCcc
Q 013827 382 KAGAVFSVAFSEDSPFVLAIGGSK-----------GKLEIWDTLSDAG 418 (436)
Q Consensus 382 ~~~~v~~~~~~~~~~~~l~s~~~d-----------g~i~iwd~~~~~~ 418 (436)
+...+..++|+|++++ |++++.+ +.|++||+.+++.
T Consensus 215 ~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 215 SAYGDWFPHPSPSGDK-VVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp CSEEEEEEEECTTSSE-EEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred CCcccCCeEECCCCCE-EEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 7778999999999996 5555554 5699999988765
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=2.2e-21 Score=175.85 Aligned_cols=277 Identities=16% Similarity=0.157 Sum_probs=189.3
Q ss_pred ceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCc---CcceeecccCCCCCCCCCcEE-EEeeCCCcEEEEeCC
Q 013827 86 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPA---FPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIWDLD 161 (436)
Q Consensus 86 ~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~vw~~~ 161 (436)
.+++++..++ .|++|+.... ..... ...+. .+.+++| +|+++++ +++..++.|.+||+.
T Consensus 2 ~~~v~~~~~~-----~v~~~d~~~~---~~~~~--~~~~~~~~~~~~~~~-------s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 2 DYILAPARPD-----KLVVIDTEKM---AVDKV--ITIADAGPTPMVPMV-------APGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEEETTT-----EEEEEETTTT---EEEEE--EECTTCTTCCCCEEE-------CTTSSEEEEEETTTTEEEEEETT
T ss_pred cEEEEcCCCC-----eEEEEECCCC---cEEEE--EEcCCCCCCccceEE-------cCCCCEEEEEeCCCCeEEEEECC
Confidence 4677777666 8888887765 22111 11222 2445555 8999766 555667899999998
Q ss_pred CCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEe------------CCCcEEEEe
Q 013827 162 VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS------------ADKQVKIWD 229 (436)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~------------~dg~v~vwd 229 (436)
+++......... ...|...+.+++|+|+|. +|++++ .++.|.+||
T Consensus 65 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d 121 (337)
T 1pby_B 65 TGETLGRIDLST----------------------PEERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYD 121 (337)
T ss_dssp TCCEEEEEECCB----------------------TTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEE
T ss_pred CCCeEeeEEcCC----------------------cccccccccceEECCCCC-EEEEEecccccccccccccCceEEEEE
Confidence 765443211100 001334678899999974 677765 579999999
Q ss_pred CCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCC
Q 013827 230 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG 309 (436)
Q Consensus 230 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg 309 (436)
+.+++....+.. ...+.+++|+|++ .+++++ ++.|.+||+.+.+...... .......+.|+|++..+++++..++
T Consensus 122 ~~~~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~--~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~ 196 (337)
T 1pby_B 122 AETLSRRKAFEA-PRQITMLAWARDG-SKLYGL--GRDLHVMDPEAGTLVEDKP-IQSWEAETYAQPDVLAVWNQHESSG 196 (337)
T ss_dssp TTTTEEEEEEEC-CSSCCCEEECTTS-SCEEEE--SSSEEEEETTTTEEEEEEC-STTTTTTTBCCCBCCCCCCCCTTTT
T ss_pred CCCCcEEEEEeC-CCCcceeEECCCC-CEEEEe--CCeEEEEECCCCcEeeeee-ccccCCCceeCCCccEEeeeccCCC
Confidence 999988877764 4567889999999 656666 6899999998776543221 1111123377888765544443333
Q ss_pred -----------------------cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEE
Q 013827 310 -----------------------TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 366 (436)
Q Consensus 310 -----------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iw 366 (436)
.|.+||+.+.+ .....+..+...+..++|+|++ .+++++ ++.|.+|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--------~~~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~ 265 (337)
T 1pby_B 197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--------MAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESF 265 (337)
T ss_dssp EEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC--------EEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEE
T ss_pred ceeeeeeccccccccccccccccceEEEeCCCCC--------ceEeecCCCCCceeeEEECCCC-CEEEEe--CCeEEEE
Confidence 46899998762 1133455566778899999998 777777 7899999
Q ss_pred ECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 367 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 367 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
|+.+++... .... ...+.+++|+|+|++ |++++.++.|.+||+.+++.+...
T Consensus 266 d~~~~~~~~--~~~~-~~~~~~~~~s~dg~~-l~~~~~~~~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 266 DLEKNASIK--RVPL-PHSYYSVNVSTDGST-VWLGGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp ETTTTEEEE--EEEC-SSCCCEEEECTTSCE-EEEESBSSEEEEEETTTCCEEEEE
T ss_pred ECCCCcCcc--eecC-CCceeeEEECCCCCE-EEEEcCCCcEEEEECcCCcEEEEE
Confidence 999876433 3322 235789999999995 666788999999999999877654
No 148
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=1.2e-20 Score=173.07 Aligned_cols=294 Identities=10% Similarity=0.125 Sum_probs=182.2
Q ss_pred cceeccCCceEEEEEecC-CcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCC----
Q 013827 78 DMTINPNDAVIVCARNED-DVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME---- 152 (436)
Q Consensus 78 ~~~~sp~~~~l~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---- 152 (436)
+.+..+...++.+|+... .-..+.+|.++...+ .+...... ....+..++| +|||++|++++.+
T Consensus 6 ~~~~~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g---~~~~~~~~-~~~~p~~l~~-------spdg~~l~~~~~~~~~~ 74 (361)
T 3scy_A 6 DPSTTDSELTMLVGTYTSGNSKGIYTFRFNEETG---ESLPLSDA-EVANPSYLIP-------SADGKFVYSVNEFSKDQ 74 (361)
T ss_dssp CCCGGGGEEEEEEEECCSSSCCEEEEEEEETTTC---CEEEEEEE-ECSCCCSEEE-------CTTSSEEEEEECCSSTT
T ss_pred ChhhCCCceEEEEEeccCCCCCCEEEEEEeCCCC---CEEEeecc-cCCCCceEEE-------CCCCCEEEEEEccCCCC
Confidence 444566666777775532 223456666666555 22211111 2223344555 9999999999876
Q ss_pred CcEEEEeCCCCC-CCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEe-CCCcEEEEeC
Q 013827 153 PAIEIWDLDVID-EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-ADKQVKIWDV 230 (436)
Q Consensus 153 g~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~v~vwd~ 230 (436)
+.|.+|+++... .... ......+......+++ ++. +|++++ .++.|.+|++
T Consensus 75 ~~v~~~~~~~~~g~~~~------------------------~~~~~~~~~~p~~~~~--dg~-~l~~~~~~~~~v~~~~~ 127 (361)
T 3scy_A 75 AAVSAFAFDKEKGTLHL------------------------LNTQKTMGADPCYLTT--NGK-NIVTANYSGGSITVFPI 127 (361)
T ss_dssp CEEEEEEEETTTTEEEE------------------------EEEEECSSSCEEEEEE--CSS-EEEEEETTTTEEEEEEB
T ss_pred CcEEEEEEeCCCCcEEE------------------------eeEeccCCCCcEEEEE--CCC-EEEEEECCCCEEEEEEe
Confidence 799999986531 1111 1111224456677777 654 555554 6889999999
Q ss_pred CCCeEEEE----E--cc--------cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCC------c-------cceE
Q 013827 231 AAGKCNLT----L--EH--------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH------S-------GFKW 283 (436)
Q Consensus 231 ~~~~~~~~----~--~~--------~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------~-------~~~~ 283 (436)
.....+.. + .+ +...+.+++|+|++..++++...++.|.+|++..... . ....
T Consensus 128 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~ 207 (361)
T 3scy_A 128 GQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV 207 (361)
T ss_dssp CTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC
T ss_pred CCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec
Confidence 75432211 1 11 1234588999999933445555589999999876542 1 1112
Q ss_pred eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEe---ccCCCeEEEEecCCCCCEEEEEeC-
Q 013827 284 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLVPNLLATGST- 359 (436)
Q Consensus 284 ~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~- 359 (436)
.....+..++|+|++..++++...++.|.+||+.++. ...+..+. .+......++|+|++ ++|+++..
T Consensus 208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~-------~~~~~~~~~~~~~~~~~~~i~~spdg-~~l~v~~~~ 279 (361)
T 3scy_A 208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM-------LDEIQTVAADTVNAQGSGDIHLSPDG-KYLYASNRL 279 (361)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE-------EEEEEEEESCSSCCCCEEEEEECTTS-SEEEEEECS
T ss_pred CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc-------eEEeEEEecCCCCCCCcccEEECCCC-CEEEEECCC
Confidence 2345678999999985445555579999999998551 11122222 223456799999999 77766555
Q ss_pred -CCcEEEEECC--CCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeC--CCCcc
Q 013827 360 -DKMVKLWDLS--NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT--LSDAG 418 (436)
Q Consensus 360 -d~~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~ 418 (436)
++.|.+|++. +++...+..... ...+..++|+|+|+++++++..++.|.+|++ .+++.
T Consensus 280 ~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 280 KADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLL 342 (361)
T ss_dssp SSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred CCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcE
Confidence 4899999996 445434444443 4567899999999975554447899999655 45544
No 149
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=1.2e-21 Score=196.27 Aligned_cols=334 Identities=12% Similarity=0.066 Sum_probs=210.1
Q ss_pred hcccceeeec----cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCc---cccccceeccCCceEEEEEe
Q 013827 21 HSCFRCHKIS----NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDS---EDLEDMTINPNDAVIVCARN 93 (436)
Q Consensus 21 ~~~~~~~~~~----~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~ 93 (436)
..+.|++++. +.|+++++|++...+...... .+. ..+.+++|||||++|+.+..
T Consensus 19 ~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~-------------------~~~~~~~~~~~~~~SpDg~~la~~~~ 79 (719)
T 1z68_A 19 FFPNWISGQEYLHQSADNNIVLYNIETGQSYTILS-------------------NRTMKSVNASNYGLSPDRQFVYLESD 79 (719)
T ss_dssp CCCEESSSSEEEEECTTSCEEEEESSSCCEEEEEC-------------------HHHHHTTTCSEEEECTTSSEEEEEEE
T ss_pred CccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEc-------------------cccccccceeeEEECCCCCeEEEEec
Confidence 3456887765 568999999886554311000 111 13889999999999998876
Q ss_pred cCCc----ceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcce
Q 013827 94 EDDV----SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPH 169 (436)
Q Consensus 94 ~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~ 169 (436)
.+.. ....+++|+...++.. . ...+.......+| ||||++||.+. ++.|++|++.+++.....
T Consensus 80 ~~~~~~~s~~~~i~~~d~~~g~~~---~--~~~l~~~~~~~~~-------SPDG~~la~~~-~~~i~~~~~~~g~~~~l~ 146 (719)
T 1z68_A 80 YSKLWRYSYTATYYIYDLSNGEFV---R--GNELPRPIQYLCW-------SPVGSKLAYVY-QNNIYLKQRPGDPPFQIT 146 (719)
T ss_dssp EEECSSSCEEEEEEEEETTTTEEC---C--SSCCCSSBCCEEE-------CSSTTCEEEEE-TTEEEEESSTTSCCEECC
T ss_pred CceeEEeecceEEEEEECCCCccc---c--ceecCcccccceE-------CCCCCEEEEEE-CCeEEEEeCCCCCcEEEe
Confidence 2110 0138889988765220 0 0011122334555 99999999986 789999999876543210
Q ss_pred eeecccchhhhhhcccCCCcccccccccCcccce---------eEEEecCCCCcEEEEEeCCC-----------------
Q 013827 170 VILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV---------LGLAWNKEFRNILASASADK----------------- 223 (436)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------~~~~~~~~~~~~l~s~~~dg----------------- 223 (436)
.. ......+.+|...| .+++|+|||. .|++++.|.
T Consensus 147 --~~----------------~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~-~la~~~~d~~~~~~~~~~~~~~~~~~ 207 (719)
T 1z68_A 147 --FN----------------GRENKIFNGIPDWVYEEEMLATKYALWWSPNGK-FLAYAEFNDTDIPVIAYSYYGDEQYP 207 (719)
T ss_dssp --CC----------------CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSS-EEEEEEEECTTSCEEEEEECCSSSSC
T ss_pred --cC----------------CCcCCeEcccccceeeeecccCcccEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCc
Confidence 00 00001112333222 5899999984 788777552
Q ss_pred -----------------cEEEEeCCCCeEE--EE------EcccCCCeEEEEEcCCCCCEEEEEECCC----cEEEEe--
Q 013827 224 -----------------QVKIWDVAAGKCN--LT------LEHHTDKVQAVAWNHHSPQILLSGSFDR----SVVMKD-- 272 (436)
Q Consensus 224 -----------------~v~vwd~~~~~~~--~~------~~~~~~~v~~~~~~~~~~~~l~s~~~d~----~i~~wd-- 272 (436)
.|++||+.+++.. .. +.+|...+..++|+|++ .++++....+ .|.+||
T Consensus 208 ~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~ 286 (719)
T 1z68_A 208 RTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFR 286 (719)
T ss_dssp EEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEEC
T ss_pred cceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEccc
Confidence 7889999887642 12 23577889999999997 7777654332 488899
Q ss_pred --cCCCCCccce----EeeeCCee-----EEEeCCCCCcEEE-EEeCCC--cEEEEeCCCCCCCCCCCCCcccEEEeccC
Q 013827 273 --ARISTHSGFK----WAVAADVE-----SLAWDPHAEHSFV-VSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHD 338 (436)
Q Consensus 273 --~~~~~~~~~~----~~~~~~i~-----~~~~~~~~~~~~~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 338 (436)
+.+++..... ..+...+. .+.|+|+|..+++ ++..+| .|.+||+..+ . ...+..+.
T Consensus 287 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~---------~-~~~lt~~~ 356 (719)
T 1z68_A 287 EDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE---------N-AIQITSGK 356 (719)
T ss_dssp SSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST---------T-CEECSCSS
T ss_pred CCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC---------c-eEecccCc
Confidence 7766555444 34555565 7899999876555 344555 4666676554 2 34455555
Q ss_pred CCeEEEEecCCCCCEEEEEeC-----CCcEEEEECCC--CCceeEEeeC----CCCCcEEEEEEcCCCCcEEEEEeCC--
Q 013827 339 KAVCTISYNPLVPNLLATGST-----DKMVKLWDLSN--NQPSCIASRN----PKAGAVFSVAFSEDSPFVLAIGGSK-- 405 (436)
Q Consensus 339 ~~v~~~~~~p~~~~~l~~~~~-----d~~i~iwd~~~--~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~d-- 405 (436)
..+..+.+. ++ ..|+..+. ++.+++|.+.. +.. ....+. ++...+..+.|+|++++++++++..
T Consensus 357 ~~v~~~~~~-d~-~~i~~~~~~~~~~~~~~~l~~~~~~~g~~-~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~ 433 (719)
T 1z68_A 357 WEAINIFRV-TQ-DSLFYSSNEFEEYPGRRNIYRISIGSYPP-SKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGI 433 (719)
T ss_dssp SCEEEEEEE-CS-SEEEEEESCGGGCTTCBEEEEEECSSSSC-CEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSS
T ss_pred eEEEEEEEE-eC-CEEEEEEecCCCCCceEEEEEEeCCCCCC-CceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCC
Confidence 667777777 77 45554444 47888888754 321 112222 2556788999999999766555544
Q ss_pred CcEEEEeCCCCccc
Q 013827 406 GKLEIWDTLSDAGI 419 (436)
Q Consensus 406 g~i~iwd~~~~~~~ 419 (436)
..+.+||+.+++.+
T Consensus 434 p~~~l~d~~~g~~~ 447 (719)
T 1z68_A 434 PISTLHDGRTDQEI 447 (719)
T ss_dssp CEEEEECSSSCCEE
T ss_pred CeEEEEECCCCCEE
Confidence 46889999887754
No 150
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=7.7e-21 Score=173.17 Aligned_cols=248 Identities=11% Similarity=0.056 Sum_probs=172.6
Q ss_pred CCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEE
Q 013827 137 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 216 (436)
Q Consensus 137 ~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 216 (436)
+++++++.++++++.++.|++||+.+++....... +....+..++|+|+|..++
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~--------------------------~~~~~~~~~~~s~dg~~~~ 58 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--------------------------PDKFGPGTAMMAPDNRTAY 58 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--------------------------SSCCSSCEEEECTTSSEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec--------------------------CCCCCCceeEECCCCCEEE
Confidence 34588999999999999999999987554332110 1112577899999986456
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEEcccC------CCeEEEEEcCCCCCEEEEEECC------------CcEEEEecCCCCC
Q 013827 217 ASASADKQVKIWDVAAGKCNLTLEHHT------DKVQAVAWNHHSPQILLSGSFD------------RSVVMKDARISTH 278 (436)
Q Consensus 217 ~s~~~dg~v~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~s~~~d------------~~i~~wd~~~~~~ 278 (436)
+++..++.|.+||+.+++....+.... ..+..++|+|++ +++++++.+ +.|.+||+.+.+.
T Consensus 59 v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 137 (349)
T 1jmx_B 59 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE 137 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred EEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccc
Confidence 666778999999999998877775332 237889999999 777777755 8999999987543
Q ss_pred cc--ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCc-------------------------c-
Q 013827 279 SG--FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ-------------------------S- 330 (436)
Q Consensus 279 ~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------------------~- 330 (436)
.. ........+.+++|+|++. +++ ++ +.|.+||+.+++......... .
T Consensus 138 ~~~~~~~~~~~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (349)
T 1jmx_B 138 AKPVRTFPMPRQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 213 (349)
T ss_dssp BCCSEEEECCSSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred cceeeeccCCCcccceeECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence 32 2234455688999999985 444 43 349999998764211000000 0
Q ss_pred ---------------------------------cEEEeccCCCeEEEEecC-CCCCEEEEEeCCCcEEEEECCCCCceeE
Q 013827 331 ---------------------------------SFTLHAHDKAVCTISYNP-LVPNLLATGSTDKMVKLWDLSNNQPSCI 376 (436)
Q Consensus 331 ---------------------------------~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 376 (436)
...+..+...+..++|+| ++ .+++++ ++.|.+||+.+++....
T Consensus 214 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~~~~~~~ 290 (349)
T 1jmx_B 214 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQRKLIKA 290 (349)
T ss_dssp EEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE--ESEEEEEETTTTEEEEE
T ss_pred eeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEEEE--cCeEEEEECccCeEEEE
Confidence 000001123456788899 88 777777 88999999998874333
Q ss_pred EeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 377 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 377 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
+.. ...+.+++|+|++++ |++++.++.|++||+.+++.+.+.
T Consensus 291 --~~~-~~~~~~~~~s~dg~~-l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 291 --ANL-DHTYYCVAFDKKGDK-LYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp --EEC-SSCCCEEEECSSSSC-EEEESBSSEEEEEETTTTEEEEEE
T ss_pred --EcC-CCCccceEECCCCCE-EEEecCCCeEEEEeccccceeeee
Confidence 222 234678999999986 555788899999999998877654
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=1e-21 Score=183.82 Aligned_cols=203 Identities=15% Similarity=0.189 Sum_probs=153.2
Q ss_pred ccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC-----------eE-----EEEEcccCCCeEEEEEcCCCCCEEE---
Q 013827 200 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-----------KC-----NLTLEHHTDKVQAVAWNHHSPQILL--- 260 (436)
Q Consensus 200 ~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~-----------~~-----~~~~~~~~~~v~~~~~~~~~~~~l~--- 260 (436)
...++.+++++++ .++++++.|+ +++|+.... .. ...+ .+...|.+++|+|++ .+|+
T Consensus 36 ~~~~n~lavs~~~-~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg-~~lav~~ 111 (434)
T 2oit_A 36 KERSSLLAVSNKY-GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDN-LTLSACM 111 (434)
T ss_dssp CSCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTS-CEEEEEE
T ss_pred CCCccEEEEecCC-CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCC-CEEEEEE
Confidence 3468899999986 5899999887 888875311 10 1122 256789999999999 7777
Q ss_pred -EEECCCcEEEEecCCC-----C---C---ccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 013827 261 -SGSFDRSVVMKDARIS-----T---H---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQ 328 (436)
Q Consensus 261 -s~~~d~~i~~wd~~~~-----~---~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~ 328 (436)
+++.|+.|++||+++. . . ......|...|.+++|+|+...++++++.||+|++||+++.
T Consensus 112 ~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~--------- 182 (434)
T 2oit_A 112 MSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET--------- 182 (434)
T ss_dssp EETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS---------
T ss_pred eccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC---------
Confidence 7888999999998754 1 1 12223468899999999986689999999999999999976
Q ss_pred cccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeC-----CCCCcEEEEEEcCCCCcEEEEEe
Q 013827 329 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN-----PKAGAVFSVAFSEDSPFVLAIGG 403 (436)
Q Consensus 329 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~ 403 (436)
........|...|.+++|+|++ .+|++|+.||.|++||++ ++........ .|...|.+++|++++.++++.+.
T Consensus 183 ~~~~~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~ 260 (434)
T 2oit_A 183 VKVCATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAA 260 (434)
T ss_dssp EEEEEEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEE
T ss_pred cceeeccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEcc
Confidence 3455566788999999999998 899999999999999998 4422222111 12337999999999886555555
Q ss_pred CCCc------EEEEeCCCCc
Q 013827 404 SKGK------LEIWDTLSDA 417 (436)
Q Consensus 404 ~dg~------i~iwd~~~~~ 417 (436)
.+|. +++|++.+.+
T Consensus 261 ~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 261 ADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp TTCCSSSCCEEEEEECCCTT
T ss_pred CCCccCCCCceEEEEeccCC
Confidence 6543 8999998653
No 152
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.88 E-value=6.7e-21 Score=198.23 Aligned_cols=291 Identities=12% Similarity=0.094 Sum_probs=210.8
Q ss_pred CCCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 70 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 70 ~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
.+|...+.++.|+|+ .+++++..++ ...||.++...... .....+. . ..+..| +|||++|+.+
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg---~~~l~~~~~~g~~~-~~l~~~~----~-~~~~~~-------SpDG~~la~~ 262 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDG---FGQIYSTDLDGKDL-RKHTSFT----D-YYPRHL-------NTDGRRILFS 262 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTS---SCEEEEEETTSCSC-EECCCCC----S-SCEEEE-------EESSSCEEEE
T ss_pred cCCCCcccceEEeCC-EEEEEEeccC---ceEEEEEeCCCCcc-eEecCCC----C-cceeeE-------cCCCCEEEEE
Confidence 357788999999998 5555554443 34788887654321 1122221 1 123344 8999999988
Q ss_pred eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEec-CCCCcEEEEEeCCCcEEEE
Q 013827 150 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-KEFRNILASASADKQVKIW 228 (436)
Q Consensus 150 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~s~~~dg~v~vw 228 (436)
. ++.|.+|++... .+.. +.. ...........|...+.+++|+ |+| ..|++++ ++.|.+|
T Consensus 263 ~-~~~i~~~d~~~~-~l~~---l~~-------------~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~ 322 (1045)
T 1k32_A 263 K-GGSIYIFNPDTE-KIEK---IEI-------------GDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQ 322 (1045)
T ss_dssp E-TTEEEEECTTTC-CEEE---CCC-------------CCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE-TTEEEEE
T ss_pred e-CCEEEEecCCce-Eeee---ecc-------------CcccccccccccccccceeeecCCCC-CEEEEEE-cCEEEEE
Confidence 5 899999998422 1111 000 0000011122366789999999 997 4677776 7899999
Q ss_pred eCCCCeEEEEEcccCC-CeEEEEEcCCCCCEEEEEECCCcEE-EEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEe
Q 013827 229 DVAAGKCNLTLEHHTD-KVQAVAWNHHSPQILLSGSFDRSVV-MKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL 306 (436)
Q Consensus 229 d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~d~~i~-~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 306 (436)
++.+++.. .+..|.. .+..++|+ ++ ..+++++.++.+. +||+.+....... .+...+..++|+|++ ..+++++
T Consensus 323 ~~~~~~~~-~~~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG-~~la~~~ 397 (1045)
T 1k32_A 323 DVSGTYVL-KVPEPLRIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNG-KFAVVAN 397 (1045)
T ss_dssp CTTSSBEE-ECSCCSCEEEEEECSS-SE-EEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTS-SEEEEEE
T ss_pred cCCCCceE-EccCCCcceEEeeeEc-CC-CeEEEEECCCceEEEEECCCCCceEec-CCccceeeeEECCCC-CEEEEEC
Confidence 99887644 4666777 89999999 88 7888888888888 8998876544433 666789999999988 5788899
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCC----------cEEEEECCCCCceeE
Q 013827 307 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK----------MVKLWDLSNNQPSCI 376 (436)
Q Consensus 307 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~----------~i~iwd~~~~~~~~~ 376 (436)
.++.|++||+.++ ........|...+..++|+|++ ++|++++.++ .|++||+.+++ .
T Consensus 398 ~~~~v~~~d~~tg---------~~~~~~~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~---~ 464 (1045)
T 1k32_A 398 DRFEIMTVDLETG---------KPTVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---I 464 (1045)
T ss_dssp TTSEEEEEETTTC---------CEEEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTE---E
T ss_pred CCCeEEEEECCCC---------ceEEeccCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCc---E
Confidence 9999999999877 4455555788899999999999 7887776643 89999999875 4
Q ss_pred EeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 377 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 377 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
..+..|...+..++|+|||++ |+.++.++...+|+....
T Consensus 465 ~~l~~~~~~~~~~~~spdG~~-l~~~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 465 FAATTENSHDYAPAFDADSKN-LYYLSYRSLDPSPDRVVL 503 (1045)
T ss_dssp EECSCSSSBEEEEEECTTSCE-EEEEESCCCCCEECSSSS
T ss_pred EEeeCCCcccCCceEcCCCCE-EEEEecccCCcCcchhcc
Confidence 556677778999999999995 777888888888886543
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=3.1e-21 Score=188.44 Aligned_cols=273 Identities=9% Similarity=0.033 Sum_probs=184.4
Q ss_pred ccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeC-
Q 013827 73 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM- 151 (436)
Q Consensus 73 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~- 151 (436)
...|.+++|+|||+.||.++..+ +.++||..+ .+....+..++. .......| +|| +++++++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~--g~~~lw~~~--~g~~~~lt~~~~----~~~~~~~~-------spd-~~l~~~~~~ 84 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSE--GSVNAYLYD--GGETVKLNREPI----NSVLDPHY-------GVG-RVILVRDVS 84 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEET--TEEEEEEEE--TTEEEECCSSCC----SEECEECT-------TCS-EEEEEEECS
T ss_pred ccchheeecCCCCCeEEEEEccC--CceeEEEEc--CCCcEeeecccc----cccccccC-------CCC-eEEEEeccC
Confidence 34689999999999999987633 234666653 221111111110 11223444 899 77777765
Q ss_pred --CCcEEEEeCCC--CCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEE
Q 013827 152 --EPAIEIWDLDV--IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 227 (436)
Q Consensus 152 --dg~i~vw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~v 227 (436)
+...++|.++. ...... +. ....+...+|+|+|...+++.+.++.+.+
T Consensus 85 ~g~~~~~l~~~~~~~~g~~~~---------------------------l~-~~~~~~~~~~s~dg~~~~~~s~~~~~~~l 136 (582)
T 3o4h_A 85 KGAEQHALFKVNTSRPGEEQR---------------------------LE-AVKPMRILSGVDTGEAVVFTGATEDRVAL 136 (582)
T ss_dssp TTSCCEEEEEEETTSTTCCEE---------------------------CT-TSCSBEEEEEEECSSCEEEEEECSSCEEE
T ss_pred CCCcceEEEEEeccCCCcccc---------------------------cc-CCCCceeeeeCCCCCeEEEEecCCCCceE
Confidence 45667766543 111110 11 11123356888887655555555556669
Q ss_pred EeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECC----CcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEE
Q 013827 228 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD----RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFV 303 (436)
Q Consensus 228 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 303 (436)
||+.+++.......+ . .+++|+|+| +.+++++.+ +.|++||+.+++... +..+...+..++|+|+|. .++
T Consensus 137 ~d~~~g~~~~l~~~~-~--~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~~~-l~~~~~~~~~~~~SpDG~-~l~ 210 (582)
T 3o4h_A 137 YALDGGGLRELARLP-G--FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGLRV-FDSGEGSFSSASISPGMK-VTA 210 (582)
T ss_dssp EEEETTEEEEEEEES-S--CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCCEE-ECCSSCEEEEEEECTTSC-EEE
T ss_pred EEccCCcEEEeecCC-C--ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCceE-eecCCCccccceECCCCC-EEE
Confidence 999988765555433 3 789999999 888877777 789999998776543 456667789999999984 666
Q ss_pred EEeCCC--cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEE--------ecCCCCCEEEEEeCCCcEEEEECCCCCc
Q 013827 304 VSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS--------YNPLVPNLLATGSTDKMVKLWDLSNNQP 373 (436)
Q Consensus 304 ~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~p~~~~~l~~~~~d~~i~iwd~~~~~~ 373 (436)
++..++ .|++||+.++ ... .+..|...+..++ |+|++ .++++++.++.+++|++ ++.
T Consensus 211 ~~~~~~~~~i~~~d~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~ 277 (582)
T 3o4h_A 211 GLETAREARLVTVDPRDG---------SVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GER 277 (582)
T ss_dssp EEECSSCEEEEEECTTTC---------CEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEE
T ss_pred EccCCCeeEEEEEcCCCC---------cEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCe
Confidence 888888 8999999876 333 5566666666667 99999 99999999999999999 442
Q ss_pred eeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCc---EEEEeCCC
Q 013827 374 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK---LEIWDTLS 415 (436)
Q Consensus 374 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~---i~iwd~~~ 415 (436)
.. ...+.+.+++|+ +++ ++++++.+.. +.+||..+
T Consensus 278 --~~---~~~~~v~~~~~s-dg~-~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 278 --VE---APQGNHGRVVLW-RGK-LVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp --EC---CCSSEEEEEEEE-TTE-EEEEEEETTEEEEEEEETTCC
T ss_pred --ec---cCCCceEEEEec-CCE-EEEEEcCCCCCCeEEEEcCCC
Confidence 21 234678999999 888 4677776643 66676653
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=1.1e-19 Score=165.69 Aligned_cols=266 Identities=9% Similarity=0.106 Sum_probs=166.9
Q ss_pred cccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEee-CC
Q 013827 74 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS-ME 152 (436)
Q Consensus 74 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~d 152 (436)
..+..++|+|||+ |+++...+. ...|++|+...+.. ... .........+..++| +|+|++|++++ .+
T Consensus 40 ~~p~~~a~spdg~-l~~~~~~~~--~~~v~~~~~~~g~~-~~~-~~~~~~~~~p~~~a~-------spdg~~l~~~~~~~ 107 (347)
T 3hfq_A 40 QNPTYLALSAKDC-LYSVDKEDD--EGGIAAWQIDGQTA-HKL-NTVVAPGTPPAYVAV-------DEARQLVYSANYHK 107 (347)
T ss_dssp SCCCCEEECTTCE-EEEEEEETT--EEEEEEEEEETTEE-EEE-EEEEEESCCCSEEEE-------ETTTTEEEEEETTT
T ss_pred CCcceEEEccCCe-EEEEEecCC--CceEEEEEecCCcE-EEe-eeeecCCCCCEEEEE-------CCCCCEEEEEeCCC
Confidence 4577899999999 555544211 12677776644311 111 110111233445555 89999988887 67
Q ss_pred CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCC-
Q 013827 153 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA- 231 (436)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~- 231 (436)
+.|.+|++.............. ...... ...+...+.+++|+|+|. ++++...++.|.+|++.
T Consensus 108 ~~v~v~~~~~~g~~~~~~~~~~-------------~~~~p~--~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 108 GTAEVMKIAADGALTLTDTVQH-------------SGHGPR--PEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp TEEEEEEECTTSCEEEEEEEEC-------------CCCCSS--TTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECT
T ss_pred CEEEEEEeCCCCCeeecceeec-------------CCCCCC--ccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECC
Confidence 9999999964322221111100 000000 112344688999999986 77777788999999998
Q ss_pred CCeEE--EEEcc-cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc-cceE---eee------CCeeEEEeCCCC
Q 013827 232 AGKCN--LTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKW---AVA------ADVESLAWDPHA 298 (436)
Q Consensus 232 ~~~~~--~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~---~~~------~~i~~~~~~~~~ 298 (436)
+++.. ..+.. ....+..++|+|+|..++++...++.|.+|++...... .... ... ..+..++|+|++
T Consensus 172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG 251 (347)
T 3hfq_A 172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG 251 (347)
T ss_dssp TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS
T ss_pred CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC
Confidence 45432 22222 23467889999999335555667899999998752211 1111 111 347889999998
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeC-CCcEEEE--ECCCCCce
Q 013827 299 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKMVKLW--DLSNNQPS 374 (436)
Q Consensus 299 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d~~i~iw--d~~~~~~~ 374 (436)
..++++...++.|.+|++.... ....+..+..+...+..++|+|++ ++|++++. ++.|.+| |..+++..
T Consensus 252 ~~l~v~~~~~~~v~v~~~~~~g------~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 252 HFLYVSNRGYNTLAVFAVTADG------HLTLIQQISTEGDFPRDFDLDPTE-AFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp CEEEEEEETTTEEEEEEECGGG------CEEEEEEEECSSSCCCEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CEEEEEeCCCCEEEEEEECCCC------cEEEeEEEecCCCCcCeEEECCCC-CEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 6566777789999999987321 013345555666678999999999 77777765 5899999 55556543
No 155
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=1.2e-20 Score=188.58 Aligned_cols=281 Identities=9% Similarity=0.084 Sum_probs=186.3
Q ss_pred ccccceeccCCceEEEEEecCCcceeEEEEEecCCCCC--Cceeeeccccc------------CcCcceeecccCCCCCC
Q 013827 75 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD--PNLYVHHHIII------------PAFPLCMAWLDCPLKDR 140 (436)
Q Consensus 75 ~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~------------~~~~~~~~~~~~~~~~s 140 (436)
.+..+.|. |..++.+..+ .| +|+..++.. ..+..++.... ...+.+++| |
T Consensus 27 ~~~~~~w~--g~~~~~~~~~------~i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~-------s 90 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGD------DL-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLD-------A 90 (706)
T ss_dssp -CTTCEEE--TTEEEEEETT------EE-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEE-------T
T ss_pred cCCCCcCc--CCeEEEEeCC------cE-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEE-------C
Confidence 46778999 5556665543 25 777776655 34433332100 012345555 8
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEe
Q 013827 141 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 220 (436)
Q Consensus 141 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 220 (436)
|| ++++.+. ++.|++||+.+++... +..+...+.+++|+|+|. .|+++
T Consensus 91 pd-~~~~~~~-~~~i~~~d~~~~~~~~----------------------------l~~~~~~~~~~~~SpdG~-~la~~- 138 (706)
T 2z3z_A 91 GR-GLVVLFT-QGGLVGFDMLARKVTY----------------------------LFDTNEETASLDFSPVGD-RVAYV- 138 (706)
T ss_dssp TT-TEEEEEE-TTEEEEEETTTTEEEE----------------------------EECCTTCCTTCEECTTSS-EEEEE-
T ss_pred CC-CeEEEEE-CCEEEEEECCCCceEE----------------------------ccCCcccccCCcCCCCCC-EEEEE-
Confidence 99 6666554 5999999997643321 224566788999999974 77774
Q ss_pred CCCcEEEEeCCC-----CeEEEEEcccCCC--------------eEEEEEcCCCCCEEEEEE------------------
Q 013827 221 ADKQVKIWDVAA-----GKCNLTLEHHTDK--------------VQAVAWNHHSPQILLSGS------------------ 263 (436)
Q Consensus 221 ~dg~v~vwd~~~-----~~~~~~~~~~~~~--------------v~~~~~~~~~~~~l~s~~------------------ 263 (436)
.|+.|++||+.+ ++.......+... +.++.|+|+| +.|++++
T Consensus 139 ~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~ 217 (706)
T 2z3z_A 139 RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLE 217 (706)
T ss_dssp ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSS
T ss_pred ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCC
Confidence 679999999998 7765544433332 4889999999 7888877
Q ss_pred ---------------CCCcEEEEecCCCCCccceE--eeeCCeeEEEeCCCCCcEEEEEeCCC-----cEEEEeCCCCCC
Q 013827 264 ---------------FDRSVVMKDARISTHSGFKW--AVAADVESLAWDPHAEHSFVVSLEDG-----TIKGFDIRTAKS 321 (436)
Q Consensus 264 ---------------~d~~i~~wd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~dg-----~i~i~d~~~~~~ 321 (436)
.+..|.+||+.+++...... .+...+..++|+|++. .+++++.++ .|.+||+.+++
T Consensus 218 ~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~- 295 (706)
T 2z3z_A 218 AESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGR- 295 (706)
T ss_dssp CEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTTCC-
T ss_pred CceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCc-
Confidence 44679999998766433222 3445689999999984 566665554 89999998761
Q ss_pred CCCCCCCcccEEEe--ccCC---CeEEEEecC--CCCCEEEEEeCCCcEEEEECC-CCCceeEEeeCCCCCcEEE-EEEc
Q 013827 322 DPDSTSQQSSFTLH--AHDK---AVCTISYNP--LVPNLLATGSTDKMVKLWDLS-NNQPSCIASRNPKAGAVFS-VAFS 392 (436)
Q Consensus 322 ~~~~~~~~~~~~~~--~~~~---~v~~~~~~p--~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~-~~~~ 392 (436)
....+. .+.. .+..++|+| ++ .++++++.|+.++||++. +++ ....+..+...+.. ++|+
T Consensus 296 --------~~~~~~~~~~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~--~~~~l~~~~~~v~~~~~~s 364 (706)
T 2z3z_A 296 --------FVRTLFVETDKHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGR--LIRQVTKGEWEVTNFAGFD 364 (706)
T ss_dssp --------EEEEEEEEECSSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSC--EEEECCCSSSCEEEEEEEC
T ss_pred --------eeeEEEEccCCCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCC--EEEecCCCCeEEEeeeEEc
Confidence 122221 2222 246789999 98 799999999999999876 333 34455666667876 7999
Q ss_pred CCCCcEEEEEeCCC----cEEEEeCCCCc
Q 013827 393 EDSPFVLAIGGSKG----KLEIWDTLSDA 417 (436)
Q Consensus 393 ~~~~~~l~s~~~dg----~i~iwd~~~~~ 417 (436)
|+++.+++++..++ .|..||+.+++
T Consensus 365 pdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 365 PKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp TTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred CCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 99997666666665 67777776654
No 156
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.85 E-value=1.4e-19 Score=167.45 Aligned_cols=285 Identities=11% Similarity=0.023 Sum_probs=180.2
Q ss_pred cccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcE
Q 013827 76 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI 155 (436)
Q Consensus 76 v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 155 (436)
+...+|||||+.|+.+...+ +..+||+++...++...+...+... .....| +|||+.|+.++.++.|
T Consensus 38 ~~~~~~SpDg~~l~~~~~~~--g~~~l~~~d~~~g~~~~lt~~~~~~----~~~~~~-------spdg~~l~~~~~~~~l 104 (388)
T 3pe7_A 38 FYQKCFTRDGSKLLFGGAFD--GPWNYYLLDLNTQVATQLTEGRGDN----TFGGFL-------SPDDDALFYVKDGRNL 104 (388)
T ss_dssp TTSCCBCTTSCEEEEEECTT--SSCEEEEEETTTCEEEECCCSSCBC----SSSCEE-------CTTSSEEEEEETTTEE
T ss_pred hcCccCCCCCCEEEEEEcCC--CCceEEEEeCCCCceEEeeeCCCCC----ccceEE-------cCCCCEEEEEeCCCeE
Confidence 34489999999999988733 2247899988765322222211111 112334 9999999999999999
Q ss_pred EEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEE--EecCCCCcEEEEE--------------
Q 013827 156 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL--AWNKEFRNILASA-------------- 219 (436)
Q Consensus 156 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~l~s~-------------- 219 (436)
++||+.+++.... ...+...+... .++|++. +++..
T Consensus 105 ~~~d~~~g~~~~~---------------------------~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~ 156 (388)
T 3pe7_A 105 MRVDLATLEENVV---------------------------YQVPAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWK 156 (388)
T ss_dssp EEEETTTCCEEEE---------------------------EECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHH
T ss_pred EEEECCCCcceee---------------------------eechhhcccccceeECCCCC-eeccccccCcccccccccc
Confidence 9999987543221 11233334333 3488874 55532
Q ss_pred --------eCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcC-CCCCEEEEEECC------CcEEEEecCCCCCccceEe
Q 013827 220 --------SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH-HSPQILLSGSFD------RSVVMKDARISTHSGFKWA 284 (436)
Q Consensus 220 --------~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~ 284 (436)
..+..|.+||+.+++.. .+..+...+..+.|+| ++ ..|+....+ ..|.++|+....... ...
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~ 233 (388)
T 3pe7_A 157 KFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNMRK-VKT 233 (388)
T ss_dssp HHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCC
T ss_pred hhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCceEE-eee
Confidence 24467999999988754 4444667889999999 88 777766653 378888876554333 222
Q ss_pred ee--CCeeEEEeCCCCCcEEEEEeCCC----cEEEEeCCCCCCCCCCCCCcccEEEeccCCC---eEEEEecCCCCCEEE
Q 013827 285 VA--ADVESLAWDPHAEHSFVVSLEDG----TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA---VCTISYNPLVPNLLA 355 (436)
Q Consensus 285 ~~--~~i~~~~~~~~~~~~~~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~p~~~~~l~ 355 (436)
.. ..+..++|+|+|..+++++..++ .|.+||+.+++. ..+..+..+... ...+.|+|+| ..|+
T Consensus 234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-------~~l~~~~~~~~~~~~~~~~~~spdg-~~l~ 305 (388)
T 3pe7_A 234 HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN-------RQLTSMPACSHLMSNYDGSLMVGDG-SDAP 305 (388)
T ss_dssp CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE-------EEEEEECCEEEEEECTTSSEEEEEE-CCC-
T ss_pred CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce-------EEEEcCCCceeeeecCCCCeEccCC-Ccce
Confidence 22 24778899999976656555433 399999988721 222222221000 1123789998 4444
Q ss_pred EE---------eCCCcEEEEECCCCCceeEEeeCCCCC-----------cEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 356 TG---------STDKMVKLWDLSNNQPSCIASRNPKAG-----------AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 356 ~~---------~~d~~i~iwd~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
.. ..+..|++||+.+++...+. .+.. .+..++|+|||+.++.++..+|...||.+.-
T Consensus 306 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 306 VDVQDDSGYKIENDPFLYVFNMKNGTQHRVA---RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp -----------CCCCEEEEEETTTTEEEEEE---ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred eEeeeccccccCCCCEEEEEeccCCceEEec---cccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 32 45678999999987643332 2333 4678899999997666666788877776543
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=1.8e-20 Score=183.14 Aligned_cols=227 Identities=11% Similarity=0.094 Sum_probs=165.5
Q ss_pred CCCCcEEEEeeC-CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcc-cceeEEEecCCCCcEEE
Q 013827 140 REKGNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT-DSVLGLAWNKEFRNILA 217 (436)
Q Consensus 140 s~~~~~l~~g~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~ 217 (436)
+|||++||+++. ||+++||++++++... +..|. ..+..++|+|+ .+++
T Consensus 30 ~~DG~~la~~s~~~g~~~lw~~~~g~~~~----------------------------lt~~~~~~~~~~~~spd--~~l~ 79 (582)
T 3o4h_A 30 VVDGDKLLVVGFSEGSVNAYLYDGGETVK----------------------------LNREPINSVLDPHYGVG--RVIL 79 (582)
T ss_dssp EETTTEEEEEEEETTEEEEEEEETTEEEE----------------------------CCSSCCSEECEECTTCS--EEEE
T ss_pred CCCCCeEEEEEccCCceeEEEEcCCCcEe----------------------------eecccccccccccCCCC--eEEE
Confidence 899999999887 9999999985432211 22344 68999999998 4788
Q ss_pred EEeC---CCcEEEEeCCC---CeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeE
Q 013827 218 SASA---DKQVKIWDVAA---GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVES 291 (436)
Q Consensus 218 s~~~---dg~v~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~ 291 (436)
+++. +....+|.+.. +... .+... ..+...+|+|++...+++.+.++.+.+||+.+++... ...+.. .+
T Consensus 80 ~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~-l~~~~~--~~ 154 (582)
T 3o4h_A 80 VRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE-LARLPG--FG 154 (582)
T ss_dssp EEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE-EEEESS--CE
T ss_pred EeccCCCCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEE-eecCCC--ce
Confidence 7775 45556655432 2222 44322 2345678888885556666666666799998775443 223333 89
Q ss_pred EEeCCCCCcEEEEEeCC----CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCC--cEEE
Q 013827 292 LAWDPHAEHSFVVSLED----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK--MVKL 365 (436)
Q Consensus 292 ~~~~~~~~~~~~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~--~i~i 365 (436)
++|+|+| +.++.++.+ +.|++||+.++ . ...+..|...+..++|+||| +.|+++..++ .|++
T Consensus 155 ~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g---------~-~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~ 222 (582)
T 3o4h_A 155 FVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSG---------G-LRVFDSGEGSFSSASISPGM-KVTAGLETAREARLVT 222 (582)
T ss_dssp EEEEEET-TEEEEEEEEETTEEEEEEEETTTC---------C-CEEECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEE
T ss_pred EEECCCC-CEEEEEEEcCCCCeEEEEEcCCCC---------C-ceEeecCCCccccceECCCC-CEEEEccCCCeeEEEE
Confidence 9999998 466666555 67999999876 2 34677788889999999999 8888888888 8999
Q ss_pred EECCCCCceeEEeeCCCCCcEEEEE--------EcCCCCcEEEEEeCCCcEEEEeCCCCccc
Q 013827 366 WDLSNNQPSCIASRNPKAGAVFSVA--------FSEDSPFVLAIGGSKGKLEIWDTLSDAGI 419 (436)
Q Consensus 366 wd~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (436)
||+.+++.. ....|...+..++ |+|||. ++++++.++.+++|++ ++.+
T Consensus 223 ~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~--g~~~ 278 (582)
T 3o4h_A 223 VDPRDGSVE---DLELPSKDFSSYRPTAITWLGYLPDGR-LAVVARREGRSAVFID--GERV 278 (582)
T ss_dssp ECTTTCCEE---ECCCSCSHHHHHCCSEEEEEEECTTSC-EEEEEEETTEEEEEET--TEEE
T ss_pred EcCCCCcEE---EccCCCcChhhhhhccccceeEcCCCc-EEEEEEcCCcEEEEEE--CCee
Confidence 999988743 4556666666666 999995 7999999999999999 5544
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=5.9e-19 Score=161.88 Aligned_cols=240 Identities=12% Similarity=0.089 Sum_probs=156.6
Q ss_pred CCCCcEEEEeeCCCcEEEEeCC-CCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCc-EEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLD-VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN-ILA 217 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~ 217 (436)
+|+|++|++++.+ .|.+|++. +++...... ...+ +.+..++|+|+|+. +++
T Consensus 48 spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~-------------------------~~~~-g~~~~~~~spdg~~l~~~ 100 (365)
T 1jof_A 48 DHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS-------------------------HPIG-GHPRANDADTNTRAIFLL 100 (365)
T ss_dssp CTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE-------------------------EECC-SSGGGGCTTSCCEEEEEE
T ss_pred CCCCCEEEEEccc-eEEEEEECCCCCEEEeeE-------------------------eecC-CCCccEEECCCCCEEEEE
Confidence 9999999999887 99999986 432211000 0001 22556899999743 345
Q ss_pred EEe-------------CCCcEEEEeCC-CCeEEEEEc----ccCCCeEEEEEcCCCCCEEEEEE-CCCcEEEEecC-CCC
Q 013827 218 SAS-------------ADKQVKIWDVA-AGKCNLTLE----HHTDKVQAVAWNHHSPQILLSGS-FDRSVVMKDAR-IST 277 (436)
Q Consensus 218 s~~-------------~dg~v~vwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~~wd~~-~~~ 277 (436)
++. .++.+.+|++. +++....+. .+...+.+++|+|+| ++++++. .++.|.+||+. +++
T Consensus 101 ~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~ 179 (365)
T 1jof_A 101 AAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGE 179 (365)
T ss_dssp ECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSC
T ss_pred EecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCC
Confidence 553 68999999997 465544443 245679999999999 6666665 46899999998 554
Q ss_pred Cccc-eEe---eeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCccc---EEEe-------ccCC----
Q 013827 278 HSGF-KWA---VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS---FTLH-------AHDK---- 339 (436)
Q Consensus 278 ~~~~-~~~---~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~-------~~~~---- 339 (436)
.... ... +...+..++|+|++..++++...++.|.+|++.... .... ..+. +|..
T Consensus 180 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~-------g~~~~~~~~~~~~~~~~~g~~~~~~~ 252 (365)
T 1jof_A 180 VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT-------HMPVYTHHSFPLIPPGIPDRDPETGK 252 (365)
T ss_dssp EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT-------CCEEEEEEEEESSCTTCCCBCTTTSS
T ss_pred EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCC-------CcEEEccceEEcCCCCcCCccccccc
Confidence 3211 111 245689999999985444444557899999875321 0111 1111 1222
Q ss_pred --CeEEEE-ecCCCCCEEEEEeCC-C-----cEEEEECC-CCCceeEEe-eCCCCCcEEEEEEcC---CCCcEEEEEeC-
Q 013827 340 --AVCTIS-YNPLVPNLLATGSTD-K-----MVKLWDLS-NNQPSCIAS-RNPKAGAVFSVAFSE---DSPFVLAIGGS- 404 (436)
Q Consensus 340 --~v~~~~-~~p~~~~~l~~~~~d-~-----~i~iwd~~-~~~~~~~~~-~~~~~~~v~~~~~~~---~~~~~l~s~~~- 404 (436)
.+..++ |+|++ ++|+++..+ + .|.+|++. +++...+.. ...+...+..++|+| +|++ |++++.
T Consensus 253 ~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~-l~v~~~~ 330 (365)
T 1jof_A 253 GLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW-MAITDDQ 330 (365)
T ss_dssp BSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE-EEEECSS
T ss_pred ccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCE-EEEEEcC
Confidence 478999 99999 777666543 3 89999996 455322221 223334466789999 8996 555655
Q ss_pred CCcEEEEeCCCC
Q 013827 405 KGKLEIWDTLSD 416 (436)
Q Consensus 405 dg~i~iwd~~~~ 416 (436)
++.|.+|++...
T Consensus 331 ~~~v~v~~~~~~ 342 (365)
T 1jof_A 331 EGWLEIYRWKDE 342 (365)
T ss_dssp SCEEEEEEEETT
T ss_pred CCeEEEEEEchh
Confidence 589999999766
No 159
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=1.4e-19 Score=163.85 Aligned_cols=234 Identities=11% Similarity=0.050 Sum_probs=166.2
Q ss_pred cEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCccc-ceeEEEecCCCCcEEEEEeCC
Q 013827 144 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD-SVLGLAWNKEFRNILASASAD 222 (436)
Q Consensus 144 ~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~d 222 (436)
++|++++.++.|.+||+.+++...... .++.. .+..++|+|+|..+++++..+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~--------------------------~~~~~~~~~~~~~s~dg~~l~v~~~~~ 55 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVIT--------------------------IADAGPTPMVPMVAPGGRIAYATVNKS 55 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEE--------------------------CTTCTTCCCCEEECTTSSEEEEEETTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEE--------------------------cCCCCCCccceEEcCCCCEEEEEeCCC
Confidence 478999999999999998755433211 01221 478899999986566777778
Q ss_pred CcEEEEeCCCCeEEEEEcc-c----CCCeEEEEEcCCCCCEEEEEE------------CCCcEEEEecCCCCCccceEee
Q 013827 223 KQVKIWDVAAGKCNLTLEH-H----TDKVQAVAWNHHSPQILLSGS------------FDRSVVMKDARISTHSGFKWAV 285 (436)
Q Consensus 223 g~v~vwd~~~~~~~~~~~~-~----~~~v~~~~~~~~~~~~l~s~~------------~d~~i~~wd~~~~~~~~~~~~~ 285 (436)
+.|.+||+.+++.+..+.. + ...+..++|+|++ ..+++++ .++.|.+||+.+.+... ....
T Consensus 56 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-~~~~ 133 (337)
T 1pby_B 56 ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK-AFEA 133 (337)
T ss_dssp TEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE-EEEC
T ss_pred CeEEEEECCCCCeEeeEEcCCcccccccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCCCcEEE-EEeC
Confidence 9999999999988776652 2 1257789999999 7777775 57999999998766543 3334
Q ss_pred eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCC----
Q 013827 286 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK---- 361 (436)
Q Consensus 286 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~---- 361 (436)
...+..++|+|++.. ++++ ++.|.+||+.++ +....+..+.. ...+.|+|++..+++++..++
T Consensus 134 ~~~~~~~~~s~dg~~-l~~~--~~~i~~~d~~~~---------~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~ 200 (337)
T 1pby_B 134 PRQITMLAWARDGSK-LYGL--GRDLHVMDPEAG---------TLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMAT 200 (337)
T ss_dssp CSSCCCEEECTTSSC-EEEE--SSSEEEEETTTT---------EEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEE
T ss_pred CCCcceeEECCCCCE-EEEe--CCeEEEEECCCC---------cEeeeeecccc-CCCceeCCCccEEeeeccCCCceee
Confidence 566888999999854 4544 688999999876 33444443331 112378898833333332333
Q ss_pred -------------------cEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 362 -------------------MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 362 -------------------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
.|.+||+.+++.. ......+...+.+++|+|++++ ++++ ++.|.+||+.+++.+...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~-l~~~--~~~v~~~d~~~~~~~~~~ 276 (337)
T 1pby_B 201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTR-AFGA--YNVLESFDLEKNASIKRV 276 (337)
T ss_dssp EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSE-EEEE--ESEEEEEETTTTEEEEEE
T ss_pred eeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCE-EEEe--CCeEEEEECCCCcCccee
Confidence 4689999998754 4445556667889999999996 5545 689999999988776543
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=6.9e-18 Score=154.54 Aligned_cols=285 Identities=8% Similarity=0.074 Sum_probs=169.7
Q ss_pred ccccccceeccCCceEEEEEecC-CcceeEEEEEecCCCCCCceeeecccc-cCcCcceeecccCCCCCCCCCcEEEEee
Q 013827 73 SEDLEDMTINPNDAVIVCARNED-DVSHLEVYILEESDGGDPNLYVHHHII-IPAFPLCMAWLDCPLKDREKGNFMAVGS 150 (436)
Q Consensus 73 ~~~v~~~~~sp~~~~l~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 150 (436)
...+..++|+|||++|+++..++ ..+.+.+|.++...+ .+....... ....+..+++ ++++|++++
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g---~~~~~~~~~~~~~~p~~~~~---------dg~~l~~~~ 116 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG---TLHLLNTQKTMGADPCYLTT---------NGKNIVTAN 116 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT---EEEEEEEEECSSSCEEEEEE---------CSSEEEEEE
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC---cEEEeeEeccCCCCcEEEEE---------CCCEEEEEE
Confidence 45678899999999998887642 122345566665433 221111111 1122223322 778777766
Q ss_pred -CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEe
Q 013827 151 -MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 229 (436)
Q Consensus 151 -~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd 229 (436)
.++.|.+|++.....+........ ....-......+...+.+++|+|+|..++++...++.|.+|+
T Consensus 117 ~~~~~v~~~~~~~~g~~~~~~~~~~-------------~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~ 183 (361)
T 3scy_A 117 YSGGSITVFPIGQDGALLPASDVIE-------------FKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFN 183 (361)
T ss_dssp TTTTEEEEEEBCTTSCBCSCSEEEE-------------CCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEEeCCCCcCcccceeEE-------------ccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 578999999975443322110000 000000001123445788999999864555555688999998
Q ss_pred CCCCe-------E------EEEEcccCCCeEEEEEcCCCCCEEEEEE-CCCcEEEEecCCCCCccceE-----eeeCCee
Q 013827 230 VAAGK-------C------NLTLEHHTDKVQAVAWNHHSPQILLSGS-FDRSVVMKDARISTHSGFKW-----AVAADVE 290 (436)
Q Consensus 230 ~~~~~-------~------~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~-----~~~~~i~ 290 (436)
+.... . ......+...+..++|+|++ +++++++ .++.|.+||+.++....... .....+.
T Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~ 262 (361)
T 3scy_A 184 INPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSG 262 (361)
T ss_dssp ECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEE
T ss_pred EcCCCCcccccceeecccccceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcc
Confidence 87543 1 11122345667899999999 6666665 68999999998554321111 1123467
Q ss_pred EEEeCCCCCcEEEEEeC-CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEe-CCCcEEEEEC
Q 013827 291 SLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDL 368 (436)
Q Consensus 291 ~~~~~~~~~~~~~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~d~~i~iwd~ 368 (436)
.++|+|++..++++... ++.|.+|++..... ....+..+.. ...+..++|+|++ ++|++++ .++.|.+|++
T Consensus 263 ~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g-----~~~~~~~~~~-g~~~~~~~~spdg-~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 263 DIHLSPDGKYLYASNRLKADGVAIFKVDETNG-----TLTKVGYQLT-GIHPRNFIITPNG-KYLLVACRDTNVIQIFER 335 (361)
T ss_dssp EEEECTTSSEEEEEECSSSCEEEEEEECTTTC-----CEEEEEEEEC-SSCCCEEEECTTS-CEEEEEETTTTEEEEEEE
T ss_pred cEEECCCCCEEEEECCCCCCEEEEEEEcCCCC-----cEEEeeEecC-CCCCceEEECCCC-CEEEEEECCCCCEEEEEE
Confidence 99999998544455555 68999999963210 0123333443 4567899999999 7777776 6789999655
Q ss_pred --CCCCceeEEee-CCCCCcEEEEEEc
Q 013827 369 --SNNQPSCIASR-NPKAGAVFSVAFS 392 (436)
Q Consensus 369 --~~~~~~~~~~~-~~~~~~v~~~~~~ 392 (436)
.+++. .... ..+...+.|+.|.
T Consensus 336 d~~~g~~--~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 336 DQATGLL--TDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CTTTCCE--EECSCCEECSSEEEEEEE
T ss_pred ECCCCcE--eecceeeeCCCCeEEEEc
Confidence 45552 2211 2234468888885
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=4.5e-20 Score=184.86 Aligned_cols=282 Identities=9% Similarity=0.058 Sum_probs=183.5
Q ss_pred ccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeC-----
Q 013827 77 EDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM----- 151 (436)
Q Consensus 77 ~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~----- 151 (436)
.+++|+|||++++.+ .++ .|++|+...+....+..++... .....+++| ||||++||+++.
T Consensus 19 ~~~~~s~dg~~~~~~-~d~-----~i~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~-------SpDg~~la~~~~~~~~~ 84 (719)
T 1z68_A 19 FFPNWISGQEYLHQS-ADN-----NIVLYNIETGQSYTILSNRTMK-SVNASNYGL-------SPDRQFVYLESDYSKLW 84 (719)
T ss_dssp CCCEESSSSEEEEEC-TTS-----CEEEEESSSCCEEEEECHHHHH-TTTCSEEEE-------CTTSSEEEEEEEEEECS
T ss_pred CccEECCCCeEEEEc-CCC-----CEEEEEcCCCcEEEEEcccccc-ccceeeEEE-------CCCCCeEEEEecCceeE
Confidence 378999999766554 344 7888888776443343333221 001234555 999999999876
Q ss_pred ----CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEE
Q 013827 152 ----EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 227 (436)
Q Consensus 152 ----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~v 227 (436)
++.|++||+.+++..... .....+..++|+|+|. .||.+. ++.|++
T Consensus 85 ~~s~~~~i~~~d~~~g~~~~~~----------------------------~l~~~~~~~~~SPDG~-~la~~~-~~~i~~ 134 (719)
T 1z68_A 85 RYSYTATYYIYDLSNGEFVRGN----------------------------ELPRPIQYLCWSPVGS-KLAYVY-QNNIYL 134 (719)
T ss_dssp SSCEEEEEEEEETTTTEECCSS----------------------------CCCSSBCCEEECSSTT-CEEEEE-TTEEEE
T ss_pred EeecceEEEEEECCCCccccce----------------------------ecCcccccceECCCCC-EEEEEE-CCeEEE
Confidence 789999999876542110 0124588999999985 677765 789999
Q ss_pred EeCCCCeEEEEE-cccCCCe-----------------EEEEEcCCCCCEEEEEECCC-----------------------
Q 013827 228 WDVAAGKCNLTL-EHHTDKV-----------------QAVAWNHHSPQILLSGSFDR----------------------- 266 (436)
Q Consensus 228 wd~~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~~l~s~~~d~----------------------- 266 (436)
||+.+++..... .++...| .+++|+|+| +.|++++.|.
T Consensus 135 ~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 213 (719)
T 1z68_A 135 KQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP 213 (719)
T ss_dssp ESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred EeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence 999888765432 2333222 489999999 7888877652
Q ss_pred -----------cEEEEecCCCCCc---c-----ceEeeeCCeeEEEeCCCCCcEEEEEeCC----CcEEEEe----CCCC
Q 013827 267 -----------SVVMKDARISTHS---G-----FKWAVAADVESLAWDPHAEHSFVVSLED----GTIKGFD----IRTA 319 (436)
Q Consensus 267 -----------~i~~wd~~~~~~~---~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~d----g~i~i~d----~~~~ 319 (436)
.|.+||+.++... . ....+...+..++|+|++ .++++.... ..|.+|| +.++
T Consensus 214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g 292 (719)
T 1z68_A 214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTW 292 (719)
T ss_dssp CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSE
T ss_pred CCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCC
Confidence 7889999876532 1 011345568999999995 566664332 2488889 6655
Q ss_pred CCCCCCCCCcccEE--EeccCCCeE-----EEEecCCCCCEEE-EEeCCC--cEEEEECCCCCceeEEeeCCCCCcEEEE
Q 013827 320 KSDPDSTSQQSSFT--LHAHDKAVC-----TISYNPLVPNLLA-TGSTDK--MVKLWDLSNNQPSCIASRNPKAGAVFSV 389 (436)
Q Consensus 320 ~~~~~~~~~~~~~~--~~~~~~~v~-----~~~~~p~~~~~l~-~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 389 (436)
+. ..+.. ...|...+. .+.|+|++..+++ +...++ .|.+||+.+++. ..+..+...+..+
T Consensus 293 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~---~~lt~~~~~v~~~ 362 (719)
T 1z68_A 293 DC-------PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA---IQITSGKWEAINI 362 (719)
T ss_dssp EC-------CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC---EECSCSSSCEEEE
T ss_pred ce-------EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce---EecccCceEEEEE
Confidence 21 11111 135666666 7899999944444 344555 577778777652 2344455567787
Q ss_pred EEcCCCCcEEEEEeC----CCcEEEEeCCC
Q 013827 390 AFSEDSPFVLAIGGS----KGKLEIWDTLS 415 (436)
Q Consensus 390 ~~~~~~~~~l~s~~~----dg~i~iwd~~~ 415 (436)
.++ +++.+++++.. ++..++|.+..
T Consensus 363 ~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 363 FRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 777 88765655544 48889998754
No 162
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.81 E-value=3.1e-18 Score=158.81 Aligned_cols=302 Identities=10% Similarity=0.006 Sum_probs=175.5
Q ss_pred cccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCC
Q 013827 74 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP 153 (436)
Q Consensus 74 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 153 (436)
..+.+++|||||+.|+.+...+. ...+++++...++...+..... ....+..| +|||++|+.++.++
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g--~~~l~~~d~~~~~~~~l~~~~~----~~~~~~~~-------spdg~~l~~~~~~~ 102 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDG--NRNYYLLNLETQQAVQLTEGKG----DNTFGGFI-------STDERAFFYVKNEL 102 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTS--SCEEEEEETTTTEEEECCCSSC----BCTTTCEE-------CTTSSEEEEEETTT
T ss_pred eeeecCcCCCCCCEEEEEEecCC--CceEEEEECCCCcEEEeecCCC----CccccceE-------CCCCCEEEEEEcCC
Confidence 34788999999999988866532 2377888876652111111110 01111334 99999999999999
Q ss_pred cEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcc--cceeEEEecCCCCcEEEEE-----eCCCcEE
Q 013827 154 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT--DSVLGLAWNKEFRNILASA-----SADKQVK 226 (436)
Q Consensus 154 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s~-----~~dg~v~ 226 (436)
.|++|++.+++............. . ...+........ .....+.|+|++. .++.+ ..+..|.
T Consensus 103 ~l~~~d~~~~~~~~~~~~~~~~~~--------~--g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~~~l~ 171 (396)
T 3c5m_A 103 NLMKVDLETLEEQVIYTVDEEWKG--------Y--GTWVANSDCTKLVGIEILKRDWQPLTS-WEKFAEFYHTNPTCRLI 171 (396)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEE--------E--EEEEECTTSSEEEEEEEEGGGCCCCCS-HHHHHHHHHTCCCEEEE
T ss_pred cEEEEECCCCCcEEEEecccccCC--------C--CCEEEeccCCccccccccccccCCCCc-ceeeeeeccCCCcceEE
Confidence 999999986543221100000000 0 000000000000 0001145788864 44433 4567899
Q ss_pred EEeCCCCeEEEEEcccCCCeEEEEEcC-CCCCEEEEEECC------CcEEEEecCCCCCccceEee-eCCeeEEEeCCCC
Q 013827 227 IWDVAAGKCNLTLEHHTDKVQAVAWNH-HSPQILLSGSFD------RSVVMKDARISTHSGFKWAV-AADVESLAWDPHA 298 (436)
Q Consensus 227 vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~-~~~i~~~~~~~~~ 298 (436)
+||+.+++..... .+...+..+.|+| ++ ..|+..+.+ ..|.+||+............ ...+..++|+|++
T Consensus 172 ~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg 249 (396)
T 3c5m_A 172 KVDIETGELEVIH-QDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDG 249 (396)
T ss_dssp EEETTTCCEEEEE-EESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTS
T ss_pred EEECCCCcEEeec-cCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCC
Confidence 9999988765444 4677899999999 67 656655543 36888888665433222211 2247788999998
Q ss_pred CcEEEEEeCC----CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecC-CCCCEEEEEe---------------
Q 013827 299 EHSFVVSLED----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP-LVPNLLATGS--------------- 358 (436)
Q Consensus 299 ~~~~~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~--------------- 358 (436)
..+++++..+ +.|.+||+.+++ . ..+.... ... +.|+| ++ .+++.++
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~---------~-~~l~~~~-~~~-~~~s~~dg-~~l~~~~~~~p~~~~~~~~~~~ 316 (396)
T 3c5m_A 250 SAMAYVSYFKGQTDRVIYKANPETLE---------N-EEVMVMP-PCS-HLMSNFDG-SLMVGDGCDAPVDVADADSYNI 316 (396)
T ss_dssp SCEEEEEEETTTCCEEEEEECTTTCC---------E-EEEEECC-SEE-EEEECSSS-SEEEEEECCC----------CC
T ss_pred CEEEEEecCCCCccceEEEEECCCCC---------e-EEeeeCC-CCC-CCccCCCC-ceEEEecCCcceeecccccccc
Confidence 6555554432 349999998762 1 1122112 233 89999 98 6777654
Q ss_pred -CCCcEEEEECCCCCceeEEeeCCCC--------CcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 359 -TDKMVKLWDLSNNQPSCIASRNPKA--------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 359 -~d~~i~iwd~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
.+..|++||+.+++...+......- ..+..++|+|+|++++.++..++...||.+.
T Consensus 317 ~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 317 ENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 3478999999887643333221100 0255678999999755555556666666543
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=4.7e-18 Score=154.68 Aligned_cols=239 Identities=9% Similarity=0.081 Sum_probs=159.5
Q ss_pred cceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCc--CcceeecccCCCCCCCCCcEEE-EeeCCCc
Q 013827 78 DMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPA--FPLCMAWLDCPLKDREKGNFMA-VGSMEPA 154 (436)
Q Consensus 78 ~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~l~-~g~~dg~ 154 (436)
.+++++++.+++++..++ .|++|+.... ..... ...+. .+..++| +|++++++ ++..++.
T Consensus 4 g~~~~~~~~~~v~~~~~~-----~v~~~d~~~~---~~~~~--~~~~~~~~~~~~~~-------s~dg~~~~v~~~~~~~ 66 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPN-----NLHVVDVASD---TVYKS--CVMPDKFGPGTAMM-------APDNRTAYVLNNHYGD 66 (349)
T ss_dssp CCCCCTTCEEEEEEETTT-----EEEEEETTTT---EEEEE--EECSSCCSSCEEEE-------CTTSSEEEEEETTTTE
T ss_pred cccccCCCEEEEEeCCCC-----eEEEEECCCC---cEEEE--EecCCCCCCceeEE-------CCCCCEEEEEeCCCCc
Confidence 568899999999988776 8889988765 22111 11122 3445555 89998664 5557899
Q ss_pred EEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCC------------
Q 013827 155 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD------------ 222 (436)
Q Consensus 155 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------------ 222 (436)
|.+||+.+++......... ....+...+.+++|+|+|+ +|++++.+
T Consensus 67 i~~~d~~t~~~~~~~~~~~---------------------~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~ 124 (349)
T 1jmx_B 67 IYGIDLDTCKNTFHANLSS---------------------VPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKP 124 (349)
T ss_dssp EEEEETTTTEEEEEEESCC---------------------STTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECC
T ss_pred EEEEeCCCCcEEEEEEccc---------------------ccccccccccceEECCCCC-EEEEEcccccccccccccCC
Confidence 9999998655432211000 0000134578999999975 77777755
Q ss_pred CcEEEEeCCCCe---EEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEe---------------
Q 013827 223 KQVKIWDVAAGK---CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--------------- 284 (436)
Q Consensus 223 g~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--------------- 284 (436)
+.|.+||+.+++ .+..+. +...+.+++|+|++ . +++++ +.|.+||+.+.+.......
T Consensus 125 ~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg-~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (349)
T 1jmx_B 125 PRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDG-S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY 199 (349)
T ss_dssp CEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTS-C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred CeEEEEECCCccccceeeecc-CCCcccceeECCCC-c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCcccee
Confidence 899999998843 334444 34468899999999 5 44443 4499999877653321100
Q ss_pred -----------------------------------------------------eeCCeeEEEeCC-CCCcEEEEEeCCCc
Q 013827 285 -----------------------------------------------------VAADVESLAWDP-HAEHSFVVSLEDGT 310 (436)
Q Consensus 285 -----------------------------------------------------~~~~i~~~~~~~-~~~~~~~~~~~dg~ 310 (436)
....+..++|+| ++. .++++ ++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~-~l~~~--~~~ 276 (349)
T 1jmx_B 200 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN-QIYGV--LNR 276 (349)
T ss_dssp CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT-EEEEE--ESE
T ss_pred eecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCC-EEEEE--cCe
Confidence 011345677889 874 56666 889
Q ss_pred EEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCce
Q 013827 311 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS 374 (436)
Q Consensus 311 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~ 374 (436)
|.+||+.+. +.+..+. ....+.+++|+|++ .+|++++.++.|++||+.+.+..
T Consensus 277 v~~~d~~~~---------~~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 277 LAKYDLKQR---------KLIKAAN-LDHTYYCVAFDKKG-DKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp EEEEETTTT---------EEEEEEE-CSSCCCEEEECSSS-SCEEEESBSSEEEEEETTTTEEE
T ss_pred EEEEECccC---------eEEEEEc-CCCCccceEECCCC-CEEEEecCCCeEEEEecccccee
Confidence 999999876 4344444 33457799999998 66667788899999999987743
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=1.5e-17 Score=166.74 Aligned_cols=347 Identities=14% Similarity=0.109 Sum_probs=201.5
Q ss_pred HHHHHHH-----hhcccceeeec---cCCCCcceeeecceeeccccccceeccCCCCCCcccCCCCCCccccccceeccC
Q 013827 13 LEEILRL-----YHSCFRCHKIS---NASNTSSIWLISGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPN 84 (436)
Q Consensus 13 ~~~~~~~-----~~~~~~~~~~~---~~~~t~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 84 (436)
|++++.. .....|.+++. +.|+++++|++...... ........ ........+++||||
T Consensus 7 l~~~~~~~~~~~~~~~~w~~dg~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~--------~~~~~~~~~~~~Spd 72 (740)
T 4a5s_A 7 LTDYLKNTYRLKLYSLRWISDHEYLYKQENNILVFNAEYGNSS------VFLENSTF--------DEFGHSINDYSISPD 72 (740)
T ss_dssp HHHHHHTCSCCCCCCEEECSSSEEEEEETTEEEEEETTTCCEE------EEECTTTT--------TTCCSCCCEEEECTT
T ss_pred HHHHhcCcccccccccEECCCCcEEEEcCCcEEEEECCCCceE------EEEechhh--------hhhcccccceEECCC
Confidence 5555553 44667888765 44899999988655421 11111100 011112345889999
Q ss_pred CceEEEEEecCCcc----eeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeC
Q 013827 85 DAVIVCARNEDDVS----HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDL 160 (436)
Q Consensus 85 ~~~l~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~ 160 (436)
|+.|+.+..+..+. ...+++|+...+....+..+ +......+| ||||+.||.+. ++.|++|++
T Consensus 73 g~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~-----~~~~~~~~~-------SPdG~~la~~~-~~~i~~~~~ 139 (740)
T 4a5s_A 73 GQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERI-----PNNTQWVTW-------SPVGHKLAYVW-NNDIYVKIE 139 (740)
T ss_dssp SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-----CTTEEEEEE-------CSSTTCEEEEE-TTEEEEESS
T ss_pred CCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccC-----CCcceeeEE-------CCCCCEEEEEE-CCeEEEEEC
Confidence 99999988753221 24778999887633222211 122234445 99999999985 789999999
Q ss_pred CCCCCCcceeeecccchhhhhhcccCCCcccccccccCccc---------ceeEEEecCCCCcEEEEEeCCC--------
Q 013827 161 DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD---------SVLGLAWNKEFRNILASASADK-------- 223 (436)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~~l~s~~~dg-------- 223 (436)
.+++...-. .. ......+.++.+ ....+.|+|||. .||.++.|.
T Consensus 140 ~~~~~~~lt--~~----------------g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~-~la~~~~d~~~v~~~~~ 200 (740)
T 4a5s_A 140 PNLPSYRIT--WT----------------GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQFNDTEVPLIEY 200 (740)
T ss_dssp TTSCCEECC--SC----------------CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEEECTTCCEEEE
T ss_pred CCCceEEEc--CC----------------CCccceecCcccccccchhcCCCcceEECCCCC-EEEEEEEcccCCceEEE
Confidence 876532210 00 000011222322 234589999985 777664321
Q ss_pred ----------------------------cEEEEeCCC---Ce--EEEEEc------ccCCCeEEEEEcCCCCCEEEEEEC
Q 013827 224 ----------------------------QVKIWDVAA---GK--CNLTLE------HHTDKVQAVAWNHHSPQILLSGSF 264 (436)
Q Consensus 224 ----------------------------~v~vwd~~~---~~--~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~ 264 (436)
.|++||+.+ ++ ....+. +|...+..++|+|+| +.++....
T Consensus 201 ~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~ 279 (740)
T 4a5s_A 201 SFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLR 279 (740)
T ss_dssp EECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEE
T ss_pred EeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeC
Confidence 488899988 73 233343 377789999999999 65555433
Q ss_pred ----CCcEEEEecCCCC----Cc--cce--EeeeCCee-----EEEeCCCCCcEE-EEEeCCC--cEEEEeCCCCCCCCC
Q 013827 265 ----DRSVVMKDARIST----HS--GFK--WAVAADVE-----SLAWDPHAEHSF-VVSLEDG--TIKGFDIRTAKSDPD 324 (436)
Q Consensus 265 ----d~~i~~wd~~~~~----~~--~~~--~~~~~~i~-----~~~~~~~~~~~~-~~~~~dg--~i~i~d~~~~~~~~~ 324 (436)
+..|.+||+.+++ +. ... ..+...+. ...|+|+|..++ ..+..+| .|.+||+..+.
T Consensus 280 r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~---- 355 (740)
T 4a5s_A 280 RIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD---- 355 (740)
T ss_dssp SSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS----
T ss_pred CCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc----
Confidence 2379999998876 22 212 22333333 788999986555 3443444 57778877552
Q ss_pred CCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeC----CCcEEEE--ECCCCCceeEEeeC----CCCCcEEEEEEcCC
Q 013827 325 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST----DKMVKLW--DLSNNQPSCIASRN----PKAGAVFSVAFSED 394 (436)
Q Consensus 325 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~----d~~i~iw--d~~~~~~~~~~~~~----~~~~~v~~~~~~~~ 394 (436)
...+......+..+.. +++..+++++.. .+...|| ++.... ....+. ........+.|+|+
T Consensus 356 ------~~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~--~~~~lt~~~~~~~~~~~~~~~S~d 426 (740)
T 4a5s_A 356 ------CTFITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYT--KVTCLSCELNPERCQYYSVSFSKE 426 (740)
T ss_dssp ------CEESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEE--EEEESSTTTSTTTBCBEEEEECTT
T ss_pred ------eEecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCC--cceeeccccCCCCCceEEEEECCC
Confidence 2333334445555432 445345555554 2334444 544433 111222 12356889999999
Q ss_pred CCcEEEEEeCC--CcEEEEeCCCCccc
Q 013827 395 SPFVLAIGGSK--GKLEIWDTLSDAGI 419 (436)
Q Consensus 395 ~~~~l~s~~~d--g~i~iwd~~~~~~~ 419 (436)
+++++.+.+.. ..+.+++..+++.+
T Consensus 427 g~~~~~~~s~~~~p~~~l~~~~~~~~~ 453 (740)
T 4a5s_A 427 AKYYQLRCSGPGLPLYTLHSSVNDKGL 453 (740)
T ss_dssp SSEEEEEECSBSSCEEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 99766555442 36788888766543
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=1.2e-16 Score=146.47 Aligned_cols=248 Identities=10% Similarity=0.024 Sum_probs=155.1
Q ss_pred cccccceeccCCceEEEEEecCCcceeEEEEEecC-CCCCCceeeecccccCcCcceeecccCCCCCCCCCcE--EEEee
Q 013827 74 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEES-DGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF--MAVGS 150 (436)
Q Consensus 74 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~--l~~g~ 150 (436)
..+..++|+|+|++|+++..+ .+.+|+.. .+.. .....+. ....+.++ .++|+|++ ++++.
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~------~v~~~~~~~~g~~-~~~~~~~--~~g~~~~~-------~~spdg~~l~~~~~~ 103 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK------KWSSFAVKSPTEI-VHEASHP--IGGHPRAN-------DADTNTRAIFLLAAK 103 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT------EEEEEEEEETTEE-EEEEEEE--CCSSGGGG-------CTTSCCEEEEEEECS
T ss_pred CCCcEEEECCCCCEEEEEccc------eEEEEEECCCCCE-EEeeEee--cCCCCccE-------EECCCCCEEEEEEec
Confidence 457889999999988887654 45555443 3311 1111111 11123333 44999994 55553
Q ss_pred -------------CCCcEEEEeCCC-CCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEE
Q 013827 151 -------------MEPAIEIWDLDV-IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 216 (436)
Q Consensus 151 -------------~dg~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 216 (436)
.+|.+.+|+++. ++........ ...+...+.+++|+|+|+ +|
T Consensus 104 ~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~-----------------------~~~~~~~~~~~~~spdG~-~l 159 (365)
T 1jof_A 104 QPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY-----------------------EYQENTGIHGMVFDPTET-YL 159 (365)
T ss_dssp STTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE-----------------------ECCTTCCEEEEEECTTSS-EE
T ss_pred CCcceeccceeecCCceEEEEccCCCCcCcceEeeE-----------------------EeCCCCcceEEEECCCCC-EE
Confidence 689999999974 2221111000 012456789999999985 66
Q ss_pred EEEe-CCCcEEEEeCC-CCeEE--EEEc--ccCCCeEEEEEcCCCCCEEEEEEC-CCcEEEEecCC--CCCcc---ceEe
Q 013827 217 ASAS-ADKQVKIWDVA-AGKCN--LTLE--HHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDARI--STHSG---FKWA 284 (436)
Q Consensus 217 ~s~~-~dg~v~vwd~~-~~~~~--~~~~--~~~~~v~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~--~~~~~---~~~~ 284 (436)
+++. .++.|++|++. +++.. ..+. .|...+..++|+|+| +++++++. ++.|.+|++.. ++... ....
T Consensus 160 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~ 238 (365)
T 1jof_A 160 YSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL 238 (365)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred EEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEc
Confidence 6655 46799999998 67543 3333 245678999999999 67766664 78999998753 33211 0111
Q ss_pred e-------eC------CeeEEE-eCCCCCcEEEEEeCCC-----cEEEEeCCC-CCCCCCCCCCcccE---EEeccCCCe
Q 013827 285 V-------AA------DVESLA-WDPHAEHSFVVSLEDG-----TIKGFDIRT-AKSDPDSTSQQSSF---TLHAHDKAV 341 (436)
Q Consensus 285 ~-------~~------~i~~~~-~~~~~~~~~~~~~~dg-----~i~i~d~~~-~~~~~~~~~~~~~~---~~~~~~~~v 341 (436)
. .. .+..++ |+|++..++++...+. .|.+|++.. + .... ....+...+
T Consensus 239 ~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g---------~~~~~~~~~~~~~~~~ 309 (365)
T 1jof_A 239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG---------SIEKQLFLSPTPTSGG 309 (365)
T ss_dssp SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS---------CEEEEEEEEECSSCCT
T ss_pred CCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCC---------CEEEeeeeeecCCCCc
Confidence 1 11 478899 9999854443333333 899999963 3 2121 133345556
Q ss_pred EEEEecC---CCCCEEEEEeC-CCcEEEEECCCCC
Q 013827 342 CTISYNP---LVPNLLATGST-DKMVKLWDLSNNQ 372 (436)
Q Consensus 342 ~~~~~~p---~~~~~l~~~~~-d~~i~iwd~~~~~ 372 (436)
..++|+| ++ ++|++++. ++.|.+|++....
T Consensus 310 ~~~a~sp~~~dg-~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 310 HSNAVSPCPWSD-EWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp TCCCEEECTTCT-TEEEEECSSSCEEEEEEEETTE
T ss_pred ccceecCCCcCC-CEEEEEEcCCCeEEEEEEchhh
Confidence 7899999 78 78888876 4899999987653
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=1.7e-16 Score=144.90 Aligned_cols=268 Identities=13% Similarity=0.103 Sum_probs=171.9
Q ss_pred cceeccCCceEEEEEecC-----CcceeEEEEEecCCCCCCceeeec-c-cccCcCcceeecccCCCCCCCCCcEEEEee
Q 013827 78 DMTINPNDAVIVCARNED-----DVSHLEVYILEESDGGDPNLYVHH-H-IIIPAFPLCMAWLDCPLKDREKGNFMAVGS 150 (436)
Q Consensus 78 ~~~~sp~~~~l~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 150 (436)
.++|+||++++.++.... +...-.|.+|+....+........ . ......|..+++ +|||++|+++.
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~-------spdg~~l~v~n 126 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQ-------TTDGKFIVLQN 126 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEE-------CTTSSEEEEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEE-------CCCCCEEEEEC
Confidence 789999999999886310 001125778877654211111000 0 000122334444 99999999887
Q ss_pred C--CCcEEEEeCCCCCCCcc-eeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEE
Q 013827 151 M--EPAIEIWDLDVIDEVQP-HVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 227 (436)
Q Consensus 151 ~--dg~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~v 227 (436)
. ++.|.+||+.+.+.+.. + .+. ....+.+.|++...+++.+.||.+.+
T Consensus 127 ~~~~~~v~v~d~~~~~~~~~~i----------------------------~~~-~~~~v~~~p~~~~~~~~~~~dg~~~~ 177 (361)
T 2oiz_A 127 ASPATSIGIVDVAKGDYVEDVT----------------------------AAA-GCWSVIPQPNRPRSFMTICGDGGLLT 177 (361)
T ss_dssp ESSSEEEEEEETTTTEEEEEEG----------------------------GGT-TEEEEEECTTSSSEEEEEETTSSEEE
T ss_pred CCCCCeEEEEECCCCcEEEEEe----------------------------cCC-CcceeEEcCCCCeeEEEECCCCcEEE
Confidence 4 58999999986543321 1 111 12335677876668889999999999
Q ss_pred EeCCC-CeEEEE------EcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccce-Ee-----------eeCC
Q 013827 228 WDVAA-GKCNLT------LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WA-----------VAAD 288 (436)
Q Consensus 228 wd~~~-~~~~~~------~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~-----------~~~~ 288 (436)
|++.. ++.... +.....++ .+.+++++ ..++..+.++.+.++|+......... .. ....
T Consensus 178 v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g 255 (361)
T 2oiz_A 178 INLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGG 255 (361)
T ss_dssp EEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECC
T ss_pred EEECCCCcEeeeccccceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCC
Confidence 99865 554422 11222222 23345666 56666778899999998754422110 00 0122
Q ss_pred eeEEEeCCCCCcEEEEEe----------CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEe
Q 013827 289 VESLAWDPHAEHSFVVSL----------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS 358 (436)
Q Consensus 289 i~~~~~~~~~~~~~~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 358 (436)
...++++|++..++++.. ..+.|.+||+.+. +.+..+..+. +..++|+|++ ++|++++
T Consensus 256 ~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---------~~v~~i~~~~--p~~ia~spdg-~~l~v~n 323 (361)
T 2oiz_A 256 YNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---------QRVARIPGRD--ALSMTIDQQR-NLMLTLD 323 (361)
T ss_dssp SSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---------EEEEEEECTT--CCEEEEETTT-TEEEEEC
T ss_pred eeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---------cEEEEEecCC--eeEEEECCCC-CEEEEeC
Confidence 234789998865555544 1358999999987 6677777776 8999999999 7888877
Q ss_pred CCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCC
Q 013827 359 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP 396 (436)
Q Consensus 359 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 396 (436)
. +.|.+||..++++..+..+.........++++|+|+
T Consensus 324 ~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 324 G-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp S-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred C-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 6 999999999984335666555666788999999986
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=7.4e-17 Score=149.14 Aligned_cols=241 Identities=10% Similarity=0.005 Sum_probs=160.4
Q ss_pred CCCCCCCcEEEEeeC-CCc--EEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCC
Q 013827 137 LKDREKGNFMAVGSM-EPA--IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR 213 (436)
Q Consensus 137 ~~~s~~~~~l~~g~~-dg~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 213 (436)
+.|||||++|+.++. +|. |.+||+.+++... ...++...+..+.|+|+|
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---------------------------lt~~~~~~~~~~~~spdg- 92 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---------------------------LTEGRGDNTFGGFLSPDD- 92 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---------------------------CCCSSCBCSSSCEECTTS-
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---------------------------eeeCCCCCccceEEcCCC-
Confidence 556999999999987 664 7888887644322 123455556678899997
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEE--EcCCCCCEEEEE----------------------ECCCcEE
Q 013827 214 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVA--WNHHSPQILLSG----------------------SFDRSVV 269 (436)
Q Consensus 214 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~s~----------------------~~d~~i~ 269 (436)
..|+.++.++.|++||+.+++....+..+...+.... +++++ .+++.. ..+..|.
T Consensus 93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (388)
T 3pe7_A 93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLM 171 (388)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEE
Confidence 5888898889999999999987766665665554444 48888 666532 2346799
Q ss_pred EEecCCCCCccceEeeeCCeeEEEeCC-CCCcEEEEEeC------CCcEEEEeCCCCCCCCCCCCCcccEEEeccC--CC
Q 013827 270 MKDARISTHSGFKWAVAADVESLAWDP-HAEHSFVVSLE------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD--KA 340 (436)
Q Consensus 270 ~wd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~ 340 (436)
+||+.+++... .......+..++|+| ++. .++.... ...|.++|+.... ...+..+. ..
T Consensus 172 ~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~----------~~~l~~~~~~~~ 239 (388)
T 3pe7_A 172 RVDLKTGESTV-ILQENQWLGHPIYRPYDDS-TVAFCHEGPHDLVDARMWLINEDGTN----------MRKVKTHAEGES 239 (388)
T ss_dssp EEETTTCCEEE-EEEESSCEEEEEEETTEEE-EEEEEECSCTTTSSCSEEEEETTSCC----------CEESCCCCTTEE
T ss_pred EEECCCCceEE-eecCCccccccEECCCCCC-EEEEEEecCCCCCcceEEEEeCCCCc----------eEEeeeCCCCcc
Confidence 99998875433 445667789999999 885 4544443 3378888876541 23333333 35
Q ss_pred eEEEEecCCCCCEEEEEeCCC----cEEEEECCCCCceeEEeeCCCCCc---EEEEEEcCCCCcEEEEE--------eCC
Q 013827 341 VCTISYNPLVPNLLATGSTDK----MVKLWDLSNNQPSCIASRNPKAGA---VFSVAFSEDSPFVLAIG--------GSK 405 (436)
Q Consensus 341 v~~~~~~p~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~s~--------~~d 405 (436)
+..+.|+|+|..++++...++ .|++||+.+++...+.....+... ...++|+|||+.++++. ..+
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 319 (388)
T 3pe7_A 240 CTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEND 319 (388)
T ss_dssp EEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCC
T ss_pred cccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCC
Confidence 778899999943434443322 399999999875555444431100 11237999999754433 456
Q ss_pred CcEEEEeCCCCcc
Q 013827 406 GKLEIWDTLSDAG 418 (436)
Q Consensus 406 g~i~iwd~~~~~~ 418 (436)
..|++||+.+++.
T Consensus 320 ~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 320 PFLYVFNMKNGTQ 332 (388)
T ss_dssp CEEEEEETTTTEE
T ss_pred CEEEEEeccCCce
Confidence 7899999988764
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.78 E-value=6.4e-17 Score=162.22 Aligned_cols=286 Identities=10% Similarity=0.078 Sum_probs=176.0
Q ss_pred ccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCC--
Q 013827 75 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME-- 152 (436)
Q Consensus 75 ~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-- 152 (436)
...+++|+|||.+++++ ++ .|++|+..++....++..+.... . ...+ ..+.|||||++|+.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~-----~i~~~~~~~~~~~~~~~~~~~~~--~--~~~~--~~~~~Spdg~~l~~~~~~~~ 84 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--EN-----NILVFNAEYGNSSVFLENSTFDE--F--GHSI--NDYSISPDGQFILLEYNYVK 84 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TT-----EEEEEETTTCCEEEEECTTTTTT--C--CSCC--CEEEECTTSSEEEEEEEEEE
T ss_pred cccccEECCCCcEEEEc--CC-----cEEEEECCCCceEEEEechhhhh--h--cccc--cceEECCCCCEEEEEECCee
Confidence 36689999999988886 54 88888887764434433333211 0 0000 012339999999999876
Q ss_pred -------CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcE
Q 013827 153 -------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV 225 (436)
Q Consensus 153 -------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 225 (436)
+.+.+||+.+++... +..|...+...+|||||. .||.+. |+.|
T Consensus 85 ~~r~~~~~~~~~~d~~~~~~~~----------------------------l~~~~~~~~~~~~SPdG~-~la~~~-~~~i 134 (740)
T 4a5s_A 85 QWRHSYTASYDIYDLNKRQLIT----------------------------EERIPNNTQWVTWSPVGH-KLAYVW-NNDI 134 (740)
T ss_dssp CSSSCEEEEEEEEETTTTEECC----------------------------SSCCCTTEEEEEECSSTT-CEEEEE-TTEE
T ss_pred eEEEccceEEEEEECCCCcEEE----------------------------cccCCCcceeeEECCCCC-EEEEEE-CCeE
Confidence 567799998755332 335777899999999985 677664 6899
Q ss_pred EEEeCCCCeEEEEE-cccCCCe-----------------EEEEEcCCCCCEEEEEECCC---------------------
Q 013827 226 KIWDVAAGKCNLTL-EHHTDKV-----------------QAVAWNHHSPQILLSGSFDR--------------------- 266 (436)
Q Consensus 226 ~vwd~~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~~l~s~~~d~--------------------- 266 (436)
++|++.+++..+.. .++...+ ..+.|+||| +.|+.++.|.
T Consensus 135 ~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~ 213 (740)
T 4a5s_A 135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKT 213 (740)
T ss_dssp EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEE
T ss_pred EEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcc
Confidence 99999887754321 2332222 348999999 7777765332
Q ss_pred ---------------cEEEEecCC---CCC--ccceE------eeeCCeeEEEeCCCCCcEEEEE-eC---CCcEEEEeC
Q 013827 267 ---------------SVVMKDARI---STH--SGFKW------AVAADVESLAWDPHAEHSFVVS-LE---DGTIKGFDI 316 (436)
Q Consensus 267 ---------------~i~~wd~~~---~~~--~~~~~------~~~~~i~~~~~~~~~~~~~~~~-~~---dg~i~i~d~ 316 (436)
.|.+||+.+ +.. ..... .+...+..++|+|++. +++.. .. +..|.+||+
T Consensus 214 ~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~-~~~~~~~r~~~~~~i~~~d~ 292 (740)
T 4a5s_A 214 VRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQER-ISLQWLRRIQNYSVMDICDY 292 (740)
T ss_dssp EEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTE-EEEEEEESSTTEEEEEEEEE
T ss_pred eeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCe-EEEEEeCCCCCEEEEEEEEC
Confidence 478888887 532 11111 1445588999999985 44443 22 337999999
Q ss_pred CCCCCCCCCCCCcccEEE--eccCCCeE-----EEEecCCCCCEEE-EEeC-C--CcEEEEECCCCCceeEEeeCCCCCc
Q 013827 317 RTAKSDPDSTSQQSSFTL--HAHDKAVC-----TISYNPLVPNLLA-TGST-D--KMVKLWDLSNNQPSCIASRNPKAGA 385 (436)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~--~~~~~~v~-----~~~~~p~~~~~l~-~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~~ 385 (436)
.+++.... ......+ ..|...+. .+.|+||| ..|+ ..+. + ..|++||+.+++.. .+......
T Consensus 293 ~tg~~~~~---~~~~~~l~~~~~~~~v~~~~~~~p~fspDG-~~l~~~~s~~~G~~~l~~~~~~~~~~~---~lT~g~~~ 365 (740)
T 4a5s_A 293 DESSGRWN---CLVARQHIEMSTTGWVGRFRPSEPHFTLDG-NSFYKIISNEEGYRHICYFQIDKKDCT---FITKGTWE 365 (740)
T ss_dssp ETTTTEEE---ECGGGCEEEECSSSCSSSSSCCCCEECTTS-SEEEEEEECTTSCEEEEEEETTCSSCE---ESCCSSSC
T ss_pred CCCccccc---eeEEEEeeeccCCceEccCcCCCceEcCCC-CEEEEEEEcCCCceEEEEEECCCCceE---ecccCCEE
Confidence 88730000 0011112 44555544 78899999 6555 5554 3 35888999877632 23333445
Q ss_pred EEEEEEcCCCCcEEEEEeC----CCcEEEEeC
Q 013827 386 VFSVAFSEDSPFVLAIGGS----KGKLEIWDT 413 (436)
Q Consensus 386 v~~~~~~~~~~~~l~s~~~----dg~i~iwd~ 413 (436)
+..+.. +|++.++.++.. .+...||.+
T Consensus 366 v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v 396 (740)
T 4a5s_A 366 VIGIEA-LTSDYLYYISNEYKGMPGGRNLYKI 396 (740)
T ss_dssp EEEEEE-ECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred EEEEEE-EeCCEEEEEEecCCCCCceeEEEEE
Confidence 555442 446656666654 234445544
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.78 E-value=2.2e-16 Score=142.51 Aligned_cols=234 Identities=18% Similarity=0.124 Sum_probs=169.8
Q ss_pred CCCCcEEEEeeCC------------------------CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCccccccc
Q 013827 140 REKGNFMAVGSME------------------------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYK 195 (436)
Q Consensus 140 s~~~~~l~~g~~d------------------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (436)
+|+|+++++...+ +.|.+||..+++.....
T Consensus 32 d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-------------------------- 85 (329)
T 3fvz_A 32 DSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS-------------------------- 85 (329)
T ss_dssp CTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE--------------------------
T ss_pred CCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc--------------------------
Confidence 8999999888877 46888887655433210
Q ss_pred ccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCe-EEEEE---------cccCCCeEEEEEcC-CCCCEEEEEE-
Q 013827 196 KGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-CNLTL---------EHHTDKVQAVAWNH-HSPQILLSGS- 263 (436)
Q Consensus 196 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~~l~s~~- 263 (436)
-.++-.....++++|+|. ++++...++.|++||..... .+..+ ..+-..+..++++| ++ .++++.+
T Consensus 86 ~~~~~~~p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~ 163 (329)
T 3fvz_A 86 GKNLFYLPHGLSIDTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGY 163 (329)
T ss_dssp CTTTCSSEEEEEECTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECS
T ss_pred CCCccCCceEEEECCCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCC
Confidence 113445788999999975 88888888999999986542 45555 23445789999999 66 7888876
Q ss_pred CCCcEEEEecCCCCCccceEee----------eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEE
Q 013827 264 FDRSVVMKDARISTHSGFKWAV----------AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 333 (436)
Q Consensus 264 ~d~~i~~wd~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 333 (436)
.++.|++||.. +......... -..+..++++|++..++++...++.|++||..++ +.+..
T Consensus 164 ~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---------~~~~~ 233 (329)
T 3fvz_A 164 CNSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---------EFVRE 233 (329)
T ss_dssp SCCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---------CEEEE
T ss_pred CCCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---------cEEEE
Confidence 69999999943 3333222111 1238899999985578888889999999999865 33444
Q ss_pred E--eccCCCeEEEEecCCCCCEEEEEe-------CCCcEEEEECCCCCceeEEee---CCCCCcEEEEEEcCCCCcEEEE
Q 013827 334 L--HAHDKAVCTISYNPLVPNLLATGS-------TDKMVKLWDLSNNQPSCIASR---NPKAGAVFSVAFSEDSPFVLAI 401 (436)
Q Consensus 334 ~--~~~~~~v~~~~~~p~~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s 401 (436)
+ ..+...+..++|+| + ..+++.+ .+..|++|+..+++. +..+ ..+...+..++++|+|. ++++
T Consensus 234 ~~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~--~~~~~~~~~~~~~p~~ia~~~dG~-lyva 308 (329)
T 3fvz_A 234 IKHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEI--IDVFKPVRKHFDMPHDIVASEDGT-VYIG 308 (329)
T ss_dssp ECCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCE--EEEECCSSSCCSSEEEEEECTTSE-EEEE
T ss_pred EeccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeE--EEEEcCCCCccCCeeEEEECCCCC-EEEE
Confidence 4 34556788999999 3 4444433 345899999998874 3333 35666799999999995 7888
Q ss_pred EeCCCcEEEEeCCCC
Q 013827 402 GGSKGKLEIWDTLSD 416 (436)
Q Consensus 402 ~~~dg~i~iwd~~~~ 416 (436)
...++.|++|++...
T Consensus 309 d~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 309 DAHTNTVWKFTLTEK 323 (329)
T ss_dssp ESSSCCEEEEEEEEC
T ss_pred ECCCCEEEEEeCCcc
Confidence 889999999998653
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.77 E-value=8.2e-16 Score=135.87 Aligned_cols=238 Identities=13% Similarity=0.090 Sum_probs=164.6
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEec-CCCCcEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-KEFRNILAS 218 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~s 218 (436)
+++++++++...++.|.+||.+ ++....... .....+|...+.++++. +++ .++++
T Consensus 38 ~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~---------------------~~~~~~~~~~p~~i~~~~~~g-~l~v~ 94 (286)
T 1q7f_A 38 NAQNDIIVADTNNHRIQIFDKE-GRFKFQFGE---------------------CGKRDSQLLYPNRVAVVRNSG-DIIVT 94 (286)
T ss_dssp CTTCCEEEEEGGGTEEEEECTT-SCEEEEECC---------------------BSSSTTCBSSEEEEEEETTTT-EEEEE
T ss_pred CCCCCEEEEECCCCEEEEECCC-CcEEEEecc---------------------cCCCcccccCceEEEEEcCCC-eEEEE
Confidence 7899988888889999999976 222211100 00012355678999994 664 45555
Q ss_pred EeC-CCcEEEEeCCCCeEEEEEc-ccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE--eeeCCeeEEEe
Q 013827 219 ASA-DKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--AVAADVESLAW 294 (436)
Q Consensus 219 ~~~-dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~i~~~~~ 294 (436)
... ++.|.+|| .+++.+..+. .+...+.++++++++ .++++...++.|.+||.... ...... .....+..+++
T Consensus 95 ~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~p~~i~~ 171 (286)
T 1q7f_A 95 ERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNGN-VLHKFGCSKHLEFPNGVVV 171 (286)
T ss_dssp ECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTTSC-EEEEEECTTTCSSEEEEEE
T ss_pred cCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCCCC-EEEEeCCCCccCCcEEEEE
Confidence 533 78999999 5677666664 344578999999999 78887778899999996532 222111 12245889999
Q ss_pred CCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEecc--CCCeEEEEecCCCCCEEEEEeCCC-cEEEEECCCC
Q 013827 295 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGSTDK-MVKLWDLSNN 371 (436)
Q Consensus 295 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~d~-~i~iwd~~~~ 371 (436)
++++ +++++...++.|++||... ..+..+..+ ...+..++++|++ +++++...++ .|.+||...
T Consensus 172 ~~~g-~l~v~~~~~~~i~~~~~~g----------~~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~g- 238 (286)
T 1q7f_A 172 NDKQ-EIFISDNRAHCVKVFNYEG----------QYLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQDG- 238 (286)
T ss_dssp CSSS-EEEEEEGGGTEEEEEETTC----------CEEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTTS-
T ss_pred CCCC-CEEEEECCCCEEEEEcCCC----------CEEEEEccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCCC-
Confidence 9987 5777777899999999743 223344332 3578899999998 7888887776 999999653
Q ss_pred CceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 372 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 372 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
+.............+.+++++|+|+ ++++ +.++.|++|++.....
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 239 QLISALESKVKHAQCFDVALMDDGS-VVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp CEEEEEEESSCCSCEEEEEEETTTE-EEEE-ETTTEEEEEECSCCCC
T ss_pred CEEEEEcccCCCCcceeEEECCCCc-EEEE-CCCCeEEEEEcccccc
Confidence 3222222222333578999999997 5776 6799999999876543
No 171
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.75 E-value=1.8e-15 Score=151.13 Aligned_cols=287 Identities=11% Similarity=0.042 Sum_probs=185.2
Q ss_pred ccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCc---CcceeecccCCCCCCCCCcEEEEeeCCC-----
Q 013827 82 NPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPA---FPLCMAWLDCPLKDREKGNFMAVGSMEP----- 153 (436)
Q Consensus 82 sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~l~~g~~dg----- 153 (436)
+|+|++++....++......+|..+...+.. ..+......... ......| ||||++||.+..++
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~lld~~~l~~~~~~~~~~~~~-------SPDg~~la~~~~~~G~~~~ 151 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEA-RVFLDPNILSDDGTVALRGYAF-------SEDGEYFAYGLSASGSDWV 151 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTTSCC-EEEECGGGGCTTSCEEEEEEEE-------CTTSSEEEEEEEETTCSCE
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCCCCc-EEEECHHHhccCCCEEEEEEEE-------CCCCCEEEEEEcCCCCceE
Confidence 4999999888766544334667776543322 222211111111 1123344 99999999876543
Q ss_pred cEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCc---------
Q 013827 154 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ--------- 224 (436)
Q Consensus 154 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~--------- 224 (436)
.|++||+.+++..... .....+..++|+|||. .|+.++.++.
T Consensus 152 ~i~v~d~~tg~~~~~~----------------------------~~~~~~~~~~wspDg~-~l~~~~~~~~~~~~~~~~~ 202 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDV----------------------------LERVKFSCMAWTHDGK-GMFYNAYPQQDGKSDGTET 202 (710)
T ss_dssp EEEEEETTTTEEEEEE----------------------------EEEECSCCEEECTTSS-EEEEEECCCCSSCCSSSCC
T ss_pred EEEEEECCCCCCCccc----------------------------ccCcccceEEEEeCCC-EEEEEEECCcccccccccc
Confidence 8999999876543210 1122367899999975 7777777665
Q ss_pred -------EEEEeCCCCeE--EEEEc--ccCCCeEEEEEcCCCCCEEEEEEC-----CCcEEEEecCC------CC-Cccc
Q 013827 225 -------VKIWDVAAGKC--NLTLE--HHTDKVQAVAWNHHSPQILLSGSF-----DRSVVMKDARI------ST-HSGF 281 (436)
Q Consensus 225 -------v~vwd~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~-----d~~i~~wd~~~------~~-~~~~ 281 (436)
|++|++.+++. ...+. .+...+..+.|+|+| .+|+.++. +..|.+||+.+ +. ....
T Consensus 203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 99999988752 22223 345568899999999 66666554 56899999986 32 2333
Q ss_pred eEeeeCCeeEEEeCCCCCcEEEEEeCC---CcEEEEeCCCCCCCCCCCCCcccEEEeccCC--CeEEEEecCCCCCEEEE
Q 013827 282 KWAVAADVESLAWDPHAEHSFVVSLED---GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK--AVCTISYNPLVPNLLAT 356 (436)
Q Consensus 282 ~~~~~~~i~~~~~~~~~~~~~~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~ 356 (436)
+..+...+.. .|+|++..+++.+..+ +.|.+||+.+.. ......+..|.. .+..+.|++++ .++++
T Consensus 282 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~ 352 (710)
T 2xdw_A 282 LIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE-------ESKWKVLVPEHEKDVLEWVACVRSN-FLVLC 352 (710)
T ss_dssp EECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC-------GGGCEEEECCCSSCEEEEEEEETTT-EEEEE
T ss_pred eeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC-------cccceeccCCCCCCeEEEEEEEcCC-EEEEE
Confidence 3333444443 4788886666665543 369999987651 012345555544 67889998765 78888
Q ss_pred EeCCCc--EEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeC---CCcEEEEeCCCCc
Q 013827 357 GSTDKM--VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS---KGKLEIWDTLSDA 417 (436)
Q Consensus 357 ~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~ 417 (436)
...++. |++|++.+++ ....+..+.+.+..+.++|++..++++.++ .+.|++||+.+++
T Consensus 353 ~~~~g~~~l~~~~~~~g~--~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 353 YLHDVKNTLQLHDLATGA--LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEETTEEEEEEEETTTCC--EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEECCEEEEEEEECCCCC--EEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 888885 5667776665 334455567788999999999765555443 4789999998876
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=9.4e-16 Score=139.98 Aligned_cols=289 Identities=10% Similarity=0.060 Sum_probs=179.1
Q ss_pred cCCceEEEEEecC-CcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeC----------
Q 013827 83 PNDAVIVCARNED-DVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM---------- 151 (436)
Q Consensus 83 p~~~~l~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---------- 151 (436)
|+++++.+..... ....-.|++|+.... .+.. .......+ .+++ +||+++|+++..
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~---~~~~--~i~~g~~p-~i~~-------spdg~~lyv~~~~~~~~~~g~~ 79 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNG---KFLG--MVPTAFNG-HVQV-------SNDGKKIYTMTTYHERITRGKR 79 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTC---CEEE--EEECCEEE-EEEE-------CTTSSEEEEEEEEETTSSSSCE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCC---eEEE--EecCCCCC-ceEE-------CCCCCEEEEEEecccccccCCC
Confidence 4566666554211 111127888887665 2221 22222333 4444 999999998863
Q ss_pred CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC--CCcEEEEe
Q 013827 152 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--DKQVKIWD 229 (436)
Q Consensus 152 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--dg~v~vwd 229 (436)
++.|.+||..+.+....+..... ...+......++++|+|+ +|+++.. +++|.+||
T Consensus 80 ~~~v~v~d~~t~~~~~~i~~~~~---------------------~~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d 137 (361)
T 2oiz_A 80 SDVVEVWDADKLTFEKEISLPPK---------------------RVQGLNYDGLFRQTTDGK-FIVLQNASPATSIGIVD 137 (361)
T ss_dssp EEEEEEEETTTCCEEEEEEECTT---------------------BCCBCCCGGGEEECTTSS-EEEEEEESSSEEEEEEE
T ss_pred CCEEEEEECcCCcEEEEEEcCcc---------------------ccccCCCcceEEECCCCC-EEEEECCCCCCeEEEEE
Confidence 67899999987665543322100 001334577899999985 6766653 68999999
Q ss_pred CCCCeEEEE-EcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE------eeeCCeeEEEeCCCCCcEE
Q 013827 230 VAAGKCNLT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW------AVAADVESLAWDPHAEHSF 302 (436)
Q Consensus 230 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~ 302 (436)
+.+++.+.. +.. . ....+.+.|++...+++.+.||.+.+|+........... ........+.+.+++. .+
T Consensus 138 ~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~ 214 (361)
T 2oiz_A 138 VAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKD-KA 214 (361)
T ss_dssp TTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSS-EE
T ss_pred CCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCC-EE
Confidence 999998887 652 2 223466788776788999999999999986533221000 0011112223345553 45
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec------c----CCCeEEEEecCCCCCEEEEEe----------CCCc
Q 013827 303 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA------H----DKAVCTISYNPLVPNLLATGS----------TDKM 362 (436)
Q Consensus 303 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------~----~~~v~~~~~~p~~~~~l~~~~----------~d~~ 362 (436)
+..+.++.+.++|+..... .....+.. + ......++|+|++..++++.. ..+.
T Consensus 215 ~~~~~~~~v~v~d~~~~~~-------~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~ 287 (361)
T 2oiz_A 215 HFVSYYGNVYSADFSGDEV-------KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAE 287 (361)
T ss_dssp EEEBTTSEEEEEECSSSSC-------EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSE
T ss_pred EEEeCCCeEEEEEecCCCc-------eecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCce
Confidence 5566788999999875421 11111110 0 011223789999844444433 1347
Q ss_pred EEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC--cccccc
Q 013827 363 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD--AGISNR 422 (436)
Q Consensus 363 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~ 422 (436)
|.+||+.+.+ .+..+..+. +.+++|+|||++ |++++. +.|.+||..++ +.+.+.
T Consensus 288 v~viD~~t~~--~v~~i~~~~--p~~ia~spdg~~-l~v~n~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 288 IWVMDTKTKQ--RVARIPGRD--ALSMTIDQQRNL-MLTLDG-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp EEEEETTTTE--EEEEEECTT--CCEEEEETTTTE-EEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred EEEEECCCCc--EEEEEecCC--eeEEEECCCCCE-EEEeCC-CeEEEEECCCCcceeeEEe
Confidence 9999999987 455555555 899999999995 665665 99999999999 877664
No 173
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.75 E-value=1.9e-15 Score=145.07 Aligned_cols=309 Identities=10% Similarity=0.053 Sum_probs=200.0
Q ss_pred ccccceeccCCceEEEEEecCCcceeEEEEEecC--CCCCCceeeecccccCcCcceeecccCCCCCC----CCCcEEEE
Q 013827 75 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEES--DGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDR----EKGNFMAV 148 (436)
Q Consensus 75 ~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~l~~ 148 (436)
.+..+.|+|||+++.+++.++ .|.+++.. .. ... ........+..+++ + |||+++++
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg-----~V~viD~~~~t~---~~v--~~i~~G~~P~~ia~-------s~~~~pDGk~l~v 260 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDG-----KVNMIDLWMKEP---TTV--AEIKIGSEARSIET-------SKMEGWEDKYAIA 260 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTS-----EEEEEETTSSSC---CEE--EEEECCSEEEEEEE-------CCSTTCTTTEEEE
T ss_pred CccceEECCCCCEEEEEcCCC-----eEEEEECCCCCC---cEe--EEEecCCCCceeEE-------ccccCCCCCEEEE
Confidence 456899999999999887655 78888874 32 221 22333333445555 7 69999888
Q ss_pred eeC-CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCccc-ceeEEEecCCCCcEEEEEeCCCcEE
Q 013827 149 GSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD-SVLGLAWNKEFRNILASASADKQVK 226 (436)
Q Consensus 149 g~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~v~ 226 (436)
+.. +++|.|+|..+.+.+..+.+.+.. ......|.. .+..+..+++++.++++...+|.|.
T Consensus 261 ~n~~~~~v~ViD~~t~~~~~~i~~~~~~-----------------~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~ 323 (567)
T 1qks_A 261 GAYWPPQYVIMDGETLEPKKIQSTRGMT-----------------YDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL 323 (567)
T ss_dssp EEEETTEEEEEETTTCCEEEEEECCEEC-----------------TTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred EEccCCeEEEEECCCCcEEEEEeccccc-----------------cccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence 775 499999998876665543221100 000011323 6788889998776777777889999
Q ss_pred EEeCCCCeE--EEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEe-----eeCCeeEEEeCCCCC
Q 013827 227 IWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-----VAADVESLAWDPHAE 299 (436)
Q Consensus 227 vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-----~~~~i~~~~~~~~~~ 299 (436)
++|..+.+. +..+. .......+.|+|++..++++...++.|.++|+.+.+....... |.+.-..+ ++|++.
T Consensus 324 ~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g 401 (567)
T 1qks_A 324 LVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFG 401 (567)
T ss_dssp EEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTE
T ss_pred EEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCC
Confidence 999987543 22332 3456778999999944455555789999999998765432221 22111122 577755
Q ss_pred cEEEEEe-CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeC-------CCcEEEEECCCC
Q 013827 300 HSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-------DKMVKLWDLSNN 371 (436)
Q Consensus 300 ~~~~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-------d~~i~iwd~~~~ 371 (436)
.+++++. .++.|.++|....+... ...+.+..+......-..+..+|++ .+|.+... .++|.++|+.+.
T Consensus 402 ~v~~t~~~g~~~Vsvid~~~~~~~~--~~~kvv~~i~~~g~g~~~i~~~p~~-~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 402 PVWATSHMGDDSVALIGTDPEGHPD--NAWKILDSFPALGGGSLFIKTHPNS-QYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEEEEBSSSSEEEEEECCTTTCTT--TBTSEEEEEECSCSCCCCEECCTTC-SEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred cEEEeCCCCCCeEEEecCCCCCCcc--ccCEEEEEEecCCCCCEEEEeCCCC-CeEEEecCCCCCcccCceEEEEECCcc
Confidence 5666654 56899999988742211 0124566666554444568899998 66666553 358999999876
Q ss_pred -----Cce-eEEe------eCCCCCcEEEEEEcCCCCcEEEEEe----CCCcEEEEeCCCCcccccc
Q 013827 372 -----QPS-CIAS------RNPKAGAVFSVAFSEDSPFVLAIGG----SKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 372 -----~~~-~~~~------~~~~~~~v~~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~ 422 (436)
... .+.. +......+..+.|+|+|++++++.. .++.|.|+|..+.+.+...
T Consensus 479 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i 545 (567)
T 1qks_A 479 TGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVI 545 (567)
T ss_dssp CCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred cccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEe
Confidence 211 1111 1112346899999999998777754 3799999999998876543
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.75 E-value=3e-16 Score=155.68 Aligned_cols=292 Identities=9% Similarity=0.022 Sum_probs=177.3
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcC-----cceeecccCCCCCCCCCcE
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAF-----PLCMAWLDCPLKDREKGNF 145 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~ 145 (436)
.|...+..++|+|++-+++....+. .+...||.+. ..+ ....+..+...+... .....|. .||||++
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~l~~~~-~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~SPDg~~ 92 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAE-AGRATLVRRR-ADG-AEESALPAPWNVRNRVFEYSGFPWAGV-----PRPAGGP 92 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTT-TTEEEEEEEC-TTS-CEEESSCTTCCBCCCGGGTCCCCEEEE-----CCSSSSC
T ss_pred hcCCccceeEEcCCeEEEEecCccc-CCcEEEEEEC-CCC-CcceeCCCCccccccccccCCccceee-----eecCCCe
Confidence 3567899999998865555542121 1234666652 222 111111121111100 0012221 1499998
Q ss_pred -EEEeeC-CCcEEEEeCC--C-CCCCcceeeecccchhhhhhcccCCCcccccccccC-----cccceeEEEecCCCCcE
Q 013827 146 -MAVGSM-EPAIEIWDLD--V-IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS-----HTDSVLGLAWNKEFRNI 215 (436)
Q Consensus 146 -l~~g~~-dg~i~vw~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~ 215 (436)
|+..+. +..|.+|++. . ++. .. +.. |...+..++|+|+|+ .
T Consensus 93 ~la~~~~~~~~l~~~~~~~~g~~~~-~~---------------------------l~~~~~~~~~~~~~~~~~spDg~-~ 143 (662)
T 3azo_A 93 LLVFTHFGDQRLYAFEPDAPGGAVP-RP---------------------------LTPVSAVGGGLRWADPVLLPERG-E 143 (662)
T ss_dssp EEEEEBTTTCCEEEECTTSTTCCCC-EE---------------------------CSCCCCSTTCEEEEEEEEETTTT-E
T ss_pred EEEEEECCCCeEEEEcCCCCCCCCC-Ee---------------------------ccCCccCCCCccccCcEECCCCC-E
Confidence 776654 4566666654 1 221 11 112 667889999999985 7
Q ss_pred EEEEeCC----------CcEEEEeCCC------CeEEEEEc-ccCCCeEEEEEcCCCCCEEEEEECC--------CcEEE
Q 013827 216 LASASAD----------KQVKIWDVAA------GKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFD--------RSVVM 270 (436)
Q Consensus 216 l~s~~~d----------g~v~vwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d--------~~i~~ 270 (436)
|++++.+ ..|++||+.+ ++. ..+. .+...+..++|+|+| +.|+.++.+ ..|.+
T Consensus 144 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~ 221 (662)
T 3azo_A 144 VWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKT 221 (662)
T ss_dssp EEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEE
T ss_pred EEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEE
Confidence 7777766 5899999987 553 4555 566788889999999 778777654 37999
Q ss_pred EecC-CCC--CccceEe-eeCCeeEEEeCCCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCcccEEEeccC-CC---
Q 013827 271 KDAR-IST--HSGFKWA-VAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KA--- 340 (436)
Q Consensus 271 wd~~-~~~--~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~--- 340 (436)
||+. ++. ....... +...+..+.|+|+|. +++++..++ .|.+||+.+++ ...+..+. ..
T Consensus 222 ~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~----------~~~l~~~~~~~~~p 290 (662)
T 3azo_A 222 ARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGA----------ATQLCRREEEFAGP 290 (662)
T ss_dssp EEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCC----------EEESSCCSSBSSCC
T ss_pred EEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCc----------eeecccccccccCc
Confidence 9998 441 2222333 357899999999986 888888888 56666654441 11221121 11
Q ss_pred -----eEEEEecCCCCCEEEEEeCCCcEEEE--ECCCCCceeEEeeCCCCCcEEEE-EEcCCCCcEEEEEeCCC--cEEE
Q 013827 341 -----VCTISYNPLVPNLLATGSTDKMVKLW--DLSNNQPSCIASRNPKAGAVFSV-AFSEDSPFVLAIGGSKG--KLEI 410 (436)
Q Consensus 341 -----v~~~~~~p~~~~~l~~~~~d~~i~iw--d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~s~~~dg--~i~i 410 (436)
+..++|+|++ .++++++. +.++|| |+.+++ ...+..+.+.+..+ +++++.- ++++++.+. .|.+
T Consensus 291 ~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~s~~~~~~-~~~~~~~~~~~~i~~ 364 (662)
T 3azo_A 291 LWTPGMRWFAPLANG-LIAVVHGK-GAAVLGILDPESGE---LVDAAGPWTEWAATLTVSGTRA-VGVAASPRTAYEVVE 364 (662)
T ss_dssp CCSTTCCSEEECTTS-CEEEEEBS-SSCEEEEEETTTTE---EEECCSSCCEEEEEEEEETTEE-EEEEEETTEEEEEEE
T ss_pred cccccCceEeEeCCC-EEEEEEEc-CccEEEEEECCCCc---EEEecCCCCeEEEEEecCCCEE-EEEEcCCCCCCEEEE
Confidence 4578899988 89999988 999999 555554 44556666677766 4443332 344445554 4555
Q ss_pred EeCCCCcc
Q 013827 411 WDTLSDAG 418 (436)
Q Consensus 411 wd~~~~~~ 418 (436)
||+.+++.
T Consensus 365 ~d~~~g~~ 372 (662)
T 3azo_A 365 LDTVTGRA 372 (662)
T ss_dssp EETTTCCE
T ss_pred EECCCCce
Confidence 66666654
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.73 E-value=2.2e-15 Score=136.96 Aligned_cols=264 Identities=12% Similarity=0.103 Sum_probs=166.7
Q ss_pred cccccceeccCCceEEEEEecC----CcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEe
Q 013827 74 EDLEDMTINPNDAVIVCARNED----DVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 74 ~~v~~~~~sp~~~~l~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 149 (436)
..+.+.++ ||+.++...... ......||+++...+....+ .......| ||||++||..
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l---------~~~~~~~~-------SpDg~~la~~ 76 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI---------ENATMPRI-------SPDGKKIAFM 76 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE---------ESCEEEEE-------CTTSSEEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc---------ccCCCeEE-------CCCCCEEEEE
Confidence 45677788 899888764321 11235788988876522111 12234555 9999999988
Q ss_pred eCC---C--cEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC---
Q 013827 150 SME---P--AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--- 221 (436)
Q Consensus 150 ~~d---g--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--- 221 (436)
+.+ + .|.+|++.+++... +..+.. +..++|+|+|. .|+.++.
T Consensus 77 ~~~~~~~~~~l~~~~~~~g~~~~----------------------------l~~~~~-~~~~~wspdg~-~l~~~~~~~~ 126 (347)
T 2gop_A 77 RANEEKKVSEIWVADLETLSSKK----------------------------ILEAKN-IRSLEWNEDSR-KLLIVGFKRR 126 (347)
T ss_dssp EEETTTTEEEEEEEETTTTEEEE----------------------------EEEESE-EEEEEECTTSS-EEEEEEECCC
T ss_pred EeccCCCcceEEEEECCCCceEE----------------------------EEcCCC-ccceeECCCCC-EEEEEEccCC
Confidence 754 3 37777876543221 112233 89999999985 5665543
Q ss_pred ------------------------CCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCC-------cEEE
Q 013827 222 ------------------------DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-------SVVM 270 (436)
Q Consensus 222 ------------------------dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~-------~i~~ 270 (436)
...|.+||+.+++.+..+.. . .+..+.|+|++ +++++..++ ...+
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l 202 (347)
T 2gop_A 127 EDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDI 202 (347)
T ss_dssp C---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEE
T ss_pred CcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccE
Confidence 25799999998887455554 3 78899999998 666665542 3455
Q ss_pred EecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCC-------CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEE
Q 013827 271 KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED-------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT 343 (436)
Q Consensus 271 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 343 (436)
|.+.++. ....... ..+..+ +|+|..+++.+..+ ..|.+|| ++ ........+...+..
T Consensus 203 ~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~---------~~~~l~~~~~~~~~~ 267 (347)
T 2gop_A 203 YIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK---------EVMGILDEVDRGVGQ 267 (347)
T ss_dssp EEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS---------CEEESSTTCCSEEEE
T ss_pred EEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC---------ceEeccccCCcccCC
Confidence 5544332 2223333 444443 89886554444332 4688888 33 222222345667776
Q ss_pred -EEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcE-EEEeCC
Q 013827 344 -ISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKL-EIWDTL 414 (436)
Q Consensus 344 -~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i-~iwd~~ 414 (436)
+.|+ ++ ++++++.++.++|| +.+++. ..+..+.+.|.+++|+| . ++++++.++.. .||.+.
T Consensus 268 ~~~~s-dg--~~~~~~~~~~~~l~-~~~g~~---~~~~~~~~~v~~~~~s~--~-~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 268 AKIKD-GK--VYFTLFEEGSVNLY-IWDGEI---KPIAKGRHWIMGFDVDE--I-VVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEET-TE--EEEEEEETTEEEEE-EESSSE---EEEECSSSEEEEEEESS--S-EEEEEECSSSCCEEEEES
T ss_pred ccEEc-Cc--EEEEEecCCcEEEE-EcCCce---EEEecCCCeEEeeeeeC--c-EEEEEcCCCChHHheEeC
Confidence 8998 65 88889999999999 875542 22233467899999999 4 56777776664 777776
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.73 E-value=4.1e-15 Score=134.42 Aligned_cols=281 Identities=9% Similarity=0.018 Sum_probs=177.2
Q ss_pred cccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCC
Q 013827 74 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP 153 (436)
Q Consensus 74 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 153 (436)
..|.++.|+|++..++....+... +.+ ....- ..... ....+.++.| ++++++++++..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~---~~~~~----~~~~~~~~~~-------~~~g~l~~~~~~~~ 66 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESEL---QTI--TAEPW---LEISK----KGLQLEGLNF-------DRQGQLFLLDVFEG 66 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGS---CEE--ECEEE---EEEES----SCCCEEEEEE-------CTTSCEEEEETTTC
T ss_pred cccceeeecCCccceeEEeecccC---ccc--cccee---EEEec----cCccccCcEE-------CCCCCEEEEECCCC
Confidence 357888999998877766555432 333 11100 00110 1122345566 78999888888899
Q ss_pred cEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCC----CcEEEEe
Q 013827 154 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD----KQVKIWD 229 (436)
Q Consensus 154 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----g~v~vwd 229 (436)
.|.+||.++++.... ...+...+.+++++|+| .++++...+ +.|.+||
T Consensus 67 ~i~~~d~~~~~~~~~---------------------------~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d 118 (333)
T 2dg1_A 67 NIFKINPETKEIKRP---------------------------FVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAAT 118 (333)
T ss_dssp EEEEECTTTCCEEEE---------------------------EECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEEC
T ss_pred EEEEEeCCCCcEEEE---------------------------eeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEe
Confidence 999999875432210 11345679999999997 477766665 6899999
Q ss_pred CCCCeEEEEEc--ccCCCeEEEEEcCCCCCEEEEEEC------CCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcE
Q 013827 230 VAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSF------DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS 301 (436)
Q Consensus 230 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 301 (436)
.++++....+. .+...+.++.++|++ .++++... .+.|..+|..+..... .......+..++|+|++..+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l 196 (333)
T 2dg1_A 119 ENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVL 196 (333)
T ss_dssp TTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEE
T ss_pred CCCCEEEEEEccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEE
Confidence 98876543443 244678999999998 77766553 2456666655433322 23344568899999988556
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCCCcccE--------EEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc
Q 013827 302 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF--------TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 373 (436)
Q Consensus 302 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~ 373 (436)
+++...++.|.+||+.+.. .... .+..+ ..+..+++++++ +++++...++.|.+||.. ++.
T Consensus 197 ~v~~~~~~~i~~~d~~~~g--------~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~-g~~ 265 (333)
T 2dg1_A 197 WVTETTANRLHRIALEDDG--------VTIQPFGATIPYYFTGH-EGPDSCCIDSDD-NLYVAMYGQGRVLVFNKR-GYP 265 (333)
T ss_dssp EEEEGGGTEEEEEEECTTS--------SSEEEEEEEEEEECCSS-SEEEEEEEBTTC-CEEEEEETTTEEEEECTT-SCE
T ss_pred EEEeCCCCeEEEEEecCCC--------cCcccccceEEEecCCC-CCCCceEECCCC-CEEEEEcCCCEEEEECCC-CCE
Confidence 6666778899999986421 1111 11111 367889999998 787777778999999984 442
Q ss_pred eeEEeeCC----CCCcEEEEEEcCCCCcEEEEEeCC-----CcEEEEeCC
Q 013827 374 SCIASRNP----KAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTL 414 (436)
Q Consensus 374 ~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~ 414 (436)
........ +...+.+++|+|++..+++++..+ +.|...++.
T Consensus 266 ~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 266 IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred EEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 22222221 112588999999987555544432 245545554
No 177
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.72 E-value=2.3e-15 Score=149.93 Aligned_cols=285 Identities=9% Similarity=-0.019 Sum_probs=180.2
Q ss_pred eccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCc---CcceeecccCCCCCCCCCcEEE-----EeeCC
Q 013827 81 INPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPA---FPLCMAWLDCPLKDREKGNFMA-----VGSME 152 (436)
Q Consensus 81 ~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~l~-----~g~~d 152 (436)
.+|+|.+++....+++.....+|..+...+.. ..+......... ......| ||||++|| .|+.+
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~l~d~~~~a~~~~~~~~~~~~-------SPDG~~la~~~~~~G~~~ 146 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQE-KVLLDPNGWSKDGTVSLGTWAV-------SWDGKKVAFAQKPNAADE 146 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCC-EEEECGGGSSSSSCEEEEEEEE-------CTTSSEEEEEEEETTCSC
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCc-EEEEchHHhccCCCEEEEEEEE-------CCCCCEEEEEECCCCCce
Confidence 45999999988776643345778777544322 222221111000 1123344 99999999 45556
Q ss_pred CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccce--eEEEecCCCCcEEEEEeCCCc------
Q 013827 153 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV--LGLAWNKEFRNILASASADKQ------ 224 (436)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~l~s~~~dg~------ 224 (436)
..|++||+.+++.... .+...+ ..++|+|+|. .|+.++.|..
T Consensus 147 ~~i~v~dl~tg~~~~~-----------------------------~~~~~~~~~~~~wspDg~-~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSKV-----------------------------DVIEGGKYATPKWTPDSK-GFYYEWLPTDPSIKVD 196 (695)
T ss_dssp CEEEEEETTTCCBCSS-----------------------------CCBSCCTTCCCEECTTSS-EEEEEECCCCTTSCGG
T ss_pred EEEEEEECCCCCCcCC-----------------------------cccCcccccceEEecCCC-EEEEEEecCCCCCccc
Confidence 7899999988765411 111122 6789999974 7888877766
Q ss_pred -------EEEEeCCCCe----EEEEEcccCCCeEEEEEcCCCCCEEEEEECCC----cEEEEecCCCCCccceEeeeCCe
Q 013827 225 -------VKIWDVAAGK----CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR----SVVMKDARISTHSGFKWAVAADV 289 (436)
Q Consensus 225 -------v~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~----~i~~wd~~~~~~~~~~~~~~~~i 289 (436)
|++|++.+++ .+.....+...+..+.|+|+| ++|+.++.++ .|.+||..+.. ...+.......
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~ 274 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAK 274 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCC
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCce
Confidence 9999998875 222333455678999999999 6666555554 56666654443 23234444555
Q ss_pred eEEEeCCCCCcEEEEEe---CCCcEEEEeCCCCCCCCCCCCCcccEEEecc--CCCeEEEEecCCCCCEEEEEeCCCcEE
Q 013827 290 ESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGSTDKMVK 364 (436)
Q Consensus 290 ~~~~~~~~~~~~~~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~d~~i~ 364 (436)
....+ +++. +++.+. .++.|.+||+.++.. .....+..+ ...+..++|+ ++ .++++...|+..+
T Consensus 275 ~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 275 YEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPAR-------ASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSE 343 (695)
T ss_dssp EEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSG-------GGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEE
T ss_pred EEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCc-------cCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEE
Confidence 66666 5665 555554 358899999876520 112334333 4457788888 44 7888899999888
Q ss_pred EEECC-CCCceeEEeeCCC-CCcEEEEEEcCCCCcEEEEEeC---CCcEEEEeCCCCcc
Q 013827 365 LWDLS-NNQPSCIASRNPK-AGAVFSVAFSEDSPFVLAIGGS---KGKLEIWDTLSDAG 418 (436)
Q Consensus 365 iwd~~-~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~ 418 (436)
||.+. .++ ....+..+ .+.+..++++|++..++++.++ .+.|++||+.+++.
T Consensus 344 l~~~~~~g~--~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 344 VRVATLKGK--PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEETTCC--EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEeCCCC--eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 87654 233 23334433 5577888999999865554443 46799999988763
No 178
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.71 E-value=2.7e-15 Score=135.35 Aligned_cols=256 Identities=9% Similarity=0.077 Sum_probs=171.2
Q ss_pred ccccccceeccCCceEEEEEecCCcc-------------------eeEEEEEecCCCCCCceeeecccccCcCcceeecc
Q 013827 73 SEDLEDMTINPNDAVIVCARNEDDVS-------------------HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWL 133 (436)
Q Consensus 73 ~~~v~~~~~sp~~~~l~~~~~~~~~~-------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (436)
-..+..++++|+|+++++...+..+. .-.|.+|+...+ .+........-..|..+++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~p~gia~- 98 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA---EILQSSGKNLFYLPHGLSI- 98 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC---CEEEEECTTTCSSEEEEEE-
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC---eEEeccCCCccCCceEEEE-
Confidence 35689999999999998776552110 015778877655 2221111111123444544
Q ss_pred cCCCCCCCCCcEEEEeeCCCcEEEEeCCCCC-CCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecC-C
Q 013827 134 DCPLKDREKGNFMAVGSMEPAIEIWDLDVID-EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK-E 211 (436)
Q Consensus 134 ~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~ 211 (436)
+++|+++++...++.|++|+.+... .+... +... ..-.-.++......++++| +
T Consensus 99 ------d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~---~~~~---------------~~g~~~~~~~~P~~ia~~~~~ 154 (329)
T 3fvz_A 99 ------DTDGNYWVTDVALHQVFKLDPHSKEGPLLIL---GRSM---------------QPGSDQNHFCQPTDVAVEPST 154 (329)
T ss_dssp ------CTTSCEEEEETTTTEEEEECTTCSSCCSEEE---SBTT---------------BCCCSTTCCSSEEEEEECTTT
T ss_pred ------CCCCCEEEEECCCCEEEEEeCCCCeEEEEEe---cccC---------------CCCCCccccCCCcEEEEeCCC
Confidence 8999999999889999999986432 11111 0000 0000023555789999999 5
Q ss_pred CCcEEEEEe-CCCcEEEEeCCCCeEEEEEcccC----------CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc
Q 013827 212 FRNILASAS-ADKQVKIWDVAAGKCNLTLEHHT----------DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG 280 (436)
Q Consensus 212 ~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 280 (436)
+ .++++.+ .++.|++|+ .+++.+..+.... .....++++|++..++++...++.|++||..+++...
T Consensus 155 g-~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~ 232 (329)
T 3fvz_A 155 G-AVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR 232 (329)
T ss_dssp C-CEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE
T ss_pred C-eEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE
Confidence 4 5777776 689999999 5677777664322 3489999999843888888889999999998665543
Q ss_pred ceE--eeeCCeeEEEeCCCCCcEEEEE-------eCCCcEEEEeCCCCCCCCCCCCCcccEEE---eccCCCeEEEEecC
Q 013827 281 FKW--AVAADVESLAWDPHAEHSFVVS-------LEDGTIKGFDIRTAKSDPDSTSQQSSFTL---HAHDKAVCTISYNP 348 (436)
Q Consensus 281 ~~~--~~~~~i~~~~~~~~~~~~~~~~-------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p 348 (436)
... .....+..++++| + ..+.+. ..+..|++||..++ ..+..+ ..+...+..++++|
T Consensus 233 ~~~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g---------~~~~~~~~~~~~~~~p~~ia~~~ 301 (329)
T 3fvz_A 233 EIKHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSG---------EIIDVFKPVRKHFDMPHDIVASE 301 (329)
T ss_dssp EECCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTC---------CEEEEECCSSSCCSSEEEEEECT
T ss_pred EEeccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCC---------eEEEEEcCCCCccCCeeEEEECC
Confidence 221 2345688899998 3 333333 23458999999877 445554 35667789999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCC
Q 013827 349 LVPNLLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 349 ~~~~~l~~~~~d~~i~iwd~~~ 370 (436)
++ .++++...++.|++|++..
T Consensus 302 dG-~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 302 DG-TVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp TS-EEEEEESSSCCEEEEEEEE
T ss_pred CC-CEEEEECCCCEEEEEeCCc
Confidence 99 8889988999999998764
No 179
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.71 E-value=6.2e-15 Score=128.96 Aligned_cols=235 Identities=11% Similarity=0.067 Sum_probs=163.6
Q ss_pred CCCCcEEE-EeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 140 REKGNFMA-VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 140 s~~~~~l~-~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
++++++++ +...++.|.+|+..+..... ....+...+.++++.++|. ++++
T Consensus 32 ~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---------------------------~~~~~~~~p~~i~~~~~g~-l~v~ 83 (270)
T 1rwi_B 32 DSAGNVYVTSEGMYGRVVKLATGSTGTTV---------------------------LPFNGLYQPQGLAVDGAGT-VYVT 83 (270)
T ss_dssp CTTCCEEEEECSSSCEEEEECC-----EE---------------------------CCCCSCCSCCCEEECTTCC-EEEE
T ss_pred CCCCCEEEEccCCCCcEEEecCCCcccce---------------------------EeeCCcCCcceeEECCCCC-EEEE
Confidence 78999777 55778999999875422110 0112335678899999974 5555
Q ss_pred EeCCCcEEEEeCCCCeEEEEEc-ccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCC
Q 013827 219 ASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 297 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~ 297 (436)
.. ++.|.+||...... ..+. .....+..+++++++ .++++...++.|.+|+..+.............+..++++++
T Consensus 84 ~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~ 160 (270)
T 1rwi_B 84 DF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS 160 (270)
T ss_dssp ET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTT
T ss_pred cC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCC
Confidence 55 88999999876543 3332 233578999999998 77777777889999976554332211222346788999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEE
Q 013827 298 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 377 (436)
Q Consensus 298 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 377 (436)
+ +++++...++.|.+||..... .......+...+..+++++++ .++++...++.|.+|+...... ..
T Consensus 161 g-~l~v~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~--~~ 227 (270)
T 1rwi_B 161 G-NVYVTDTDNNRVVKLEAESNN---------QVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTS--TV 227 (270)
T ss_dssp C-CEEEEEGGGTEEEEECTTTCC---------EEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCC--EE
T ss_pred C-CEEEEECCCCEEEEEecCCCc---------eEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCcc--ee
Confidence 7 577777778899999987651 111112233568899999998 7888877789999999876542 22
Q ss_pred eeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccc
Q 013827 378 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 419 (436)
Q Consensus 378 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (436)
....+...+.+++++++|. ++++...++.|+++++...+..
T Consensus 228 ~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 228 LPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLEHHHH 268 (270)
T ss_dssp CCCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCGGGSC
T ss_pred eccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCCcccc
Confidence 2223335689999999998 7888889999999999876654
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.71 E-value=6.9e-16 Score=153.03 Aligned_cols=242 Identities=11% Similarity=-0.021 Sum_probs=151.0
Q ss_pred cceec--cCCce-EEEEEecCCcceeEEEEEecC--C-CCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeC
Q 013827 78 DMTIN--PNDAV-IVCARNEDDVSHLEVYILEES--D-GGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 151 (436)
Q Consensus 78 ~~~~s--p~~~~-l~~~~~~~~~~~~~v~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 151 (436)
.+.|+ |||+. |+.+... . .+||+++.. . +....+..............++| ||||+.|++++.
T Consensus 81 ~~~~~~SPDg~~~la~~~~~-~---~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~-------spDg~~l~~~~~ 149 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFG-D---QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVL-------LPERGEVWCMAE 149 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTT-T---CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEE-------ETTTTEEEEEEE
T ss_pred cceeeeecCCCeEEEEEECC-C---CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEE-------CCCCCEEEEEEe
Confidence 45565 99999 7766433 2 478888876 2 32111111000000112234555 999999999887
Q ss_pred C----------CcEEEEeCCC------CCCCcceeeecccchhhhhhcccCCCccccccccc-CcccceeEEEecCCCCc
Q 013827 152 E----------PAIEIWDLDV------IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKG-SHTDSVLGLAWNKEFRN 214 (436)
Q Consensus 152 d----------g~i~vw~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~ 214 (436)
+ ..|++||+.+ ++.. .+. .+...+..++|+|||+
T Consensus 150 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------------------------~l~~~~~~~~~~~~~SpDG~- 200 (662)
T 3azo_A 150 EFTGEGPSDVRRFLAAVPLDGSAAADRSAVR----------------------------ELSDDAHRFVTGPRLSPDGR- 200 (662)
T ss_dssp EECSSSTTCEEEEEEEEETTSTTTTCGGGSE----------------------------ESSCSCSSEECCCEECTTSS-
T ss_pred cccCCCCCCceeEEEEEECCCCccccCCcee----------------------------EEEecCCCcccCceECCCCC-
Confidence 7 5899999875 2211 122 3456788899999985
Q ss_pred EEEEEeCC--------CcEEEEeCC-CC---eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCC--cEEEEecCCCCCcc
Q 013827 215 ILASASAD--------KQVKIWDVA-AG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSG 280 (436)
Q Consensus 215 ~l~s~~~d--------g~v~vwd~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~ 280 (436)
.|+.++.+ ..|++||+. ++ +......++...+..+.|+|+| .++++++.++ .|.+||+.+++...
T Consensus 201 ~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg-~l~~~~~~~~~~~l~~~~~~~~~~~~ 279 (662)
T 3azo_A 201 QAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG-SLIVATDRTGWWNLHRVDPATGAATQ 279 (662)
T ss_dssp EEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS-CEEEEECTTSSCEEEEECTTTCCEEE
T ss_pred EEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC-eEEEEECCCCCeEEEEEECCCCceee
Confidence 77766644 379999998 56 4444445567889999999999 5888888888 56666664544322
Q ss_pred ceEeeeC--------CeeEEEeCCCCCcEEEEEeCCCcEEEE--eCCCCCCCCCCCCCcccEEEeccCCCeEEE-EecCC
Q 013827 281 FKWAVAA--------DVESLAWDPHAEHSFVVSLEDGTIKGF--DIRTAKSDPDSTSQQSSFTLHAHDKAVCTI-SYNPL 349 (436)
Q Consensus 281 ~~~~~~~--------~i~~~~~~~~~~~~~~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~p~ 349 (436)
....+.. .+..++|+|++ .+++++.. +.+++| |+..+ . ...+..+...+..+ .++++
T Consensus 280 l~~~~~~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~d~~~~---------~-~~~l~~~~~~~~~~~s~~~~ 347 (662)
T 3azo_A 280 LCRREEEFAGPLWTPGMRWFAPLANG-LIAVVHGK-GAAVLGILDPESG---------E-LVDAAGPWTEWAATLTVSGT 347 (662)
T ss_dssp SSCCSSBSSCCCCSTTCCSEEECTTS-CEEEEEBS-SSCEEEEEETTTT---------E-EEECCSSCCEEEEEEEEETT
T ss_pred cccccccccCccccccCceEeEeCCC-EEEEEEEc-CccEEEEEECCCC---------c-EEEecCCCCeEEEEEecCCC
Confidence 1111111 14578888876 68888888 999999 44433 2 45566676777766 55433
Q ss_pred CCCEEEEEeCCC--cEEEEECCCCCc
Q 013827 350 VPNLLATGSTDK--MVKLWDLSNNQP 373 (436)
Q Consensus 350 ~~~~l~~~~~d~--~i~iwd~~~~~~ 373 (436)
. .++++++.+. .|.++|+.+++.
T Consensus 348 ~-~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 348 R-AVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp E-EEEEEEETTEEEEEEEEETTTCCE
T ss_pred E-EEEEEcCCCCCCEEEEEECCCCce
Confidence 2 2334445454 466667777763
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.69 E-value=3.8e-14 Score=125.08 Aligned_cols=244 Identities=12% Similarity=0.120 Sum_probs=162.3
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeccc----ccCcCcceeecccCCCCCCCCCcEE
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHI----IIPAFPLCMAWLDCPLKDREKGNFM 146 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~l 146 (436)
.+-..+.+++++|+++++++...++ .|..|+.... .+...... .....+..+++. .++++++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~-----~i~~~d~~g~---~~~~~~~~~~~~~~~~~p~~i~~~------~~~g~l~ 92 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNH-----RIQIFDKEGR---FKFQFGECGKRDSQLLYPNRVAVV------RNSGDII 92 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGT-----EEEEECTTSC---EEEEECCBSSSTTCBSSEEEEEEE------TTTTEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCC-----EEEEECCCCc---EEEEecccCCCcccccCceEEEEE------cCCCeEE
Confidence 3445688999999999888776555 7888876532 11111100 001123344431 3677777
Q ss_pred EEeeC-CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcE
Q 013827 147 AVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV 225 (436)
Q Consensus 147 ~~g~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 225 (436)
++... ++.|++|+.+ ++..... ...+...+.++++.|+| .++++...++.|
T Consensus 93 v~~~~~~~~i~~~d~~-g~~~~~~--------------------------~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i 144 (286)
T 1q7f_A 93 VTERSPTHQIQIYNQY-GQFVRKF--------------------------GATILQHPRGVTVDNKG-RIIVVECKVMRV 144 (286)
T ss_dssp EEECGGGCEEEEECTT-SCEEEEE--------------------------CTTTCSCEEEEEECTTS-CEEEEETTTTEE
T ss_pred EEcCCCCCEEEEECCC-CcEEEEe--------------------------cCccCCCceEEEEeCCC-CEEEEECCCCEE
Confidence 77643 8899999943 3322110 01244568899999997 477777778999
Q ss_pred EEEeCCCCeEEEEEc--ccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEee--eCCeeEEEeCCCCCcE
Q 013827 226 KIWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV--AADVESLAWDPHAEHS 301 (436)
Q Consensus 226 ~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~ 301 (436)
.+||.. ++.+..+. .+...+..+++++++ .++++...++.|.+||.... ........ ...+..+++++++ ++
T Consensus 145 ~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~-~~~~~~~~g~~~~p~~i~~d~~G-~l 220 (286)
T 1q7f_A 145 IIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQ-YLRQIGGEGITNYPIGVGINSNG-EI 220 (286)
T ss_dssp EEECTT-SCEEEEEECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCC-EEEEESCTTTSCSEEEEEECTTC-CE
T ss_pred EEEcCC-CCEEEEeCCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCCC-EEEEEccCCccCCCcEEEECCCC-CE
Confidence 999964 55555553 344578999999998 77787788999999997532 22211111 2468899999987 67
Q ss_pred EEEEeCCC-cEEEEeCCCCCCCCCCCCCcccEEEeccC--CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 013827 302 FVVSLEDG-TIKGFDIRTAKSDPDSTSQQSSFTLHAHD--KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 302 ~~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
+++...++ .|.+||... ..+..+..+. ..+..++++|++ .++++ +.++.|++|++....
T Consensus 221 ~v~~~~~~~~i~~~~~~g----------~~~~~~~~~~~~~~~~~i~~~~~g-~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 221 LIADNHNNFNLTIFTQDG----------QLISALESKVKHAQCFDVALMDDG-SVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEEECSSSCEEEEECTTS----------CEEEEEEESSCCSCEEEEEEETTT-EEEEE-ETTTEEEEEECSCCC
T ss_pred EEEeCCCCEEEEEECCCC----------CEEEEEcccCCCCcceeEEECCCC-cEEEE-CCCCeEEEEEccccc
Confidence 77777775 999999542 3344444433 347799999998 66666 679999999986543
No 182
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.69 E-value=5.1e-16 Score=143.76 Aligned_cols=235 Identities=9% Similarity=0.013 Sum_probs=151.4
Q ss_pred CCCCCCCCcEEEEeeCC---CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCC
Q 013827 136 PLKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF 212 (436)
Q Consensus 136 ~~~~s~~~~~l~~g~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 212 (436)
.+.|+|||++|+..... ..|.+||+.+++.... ..++......+.|+|+|
T Consensus 40 ~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l---------------------------~~~~~~~~~~~~~spdg 92 (396)
T 3c5m_A 40 QKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL---------------------------TEGKGDNTFGGFISTDE 92 (396)
T ss_dssp SCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC---------------------------CCSSCBCTTTCEECTTS
T ss_pred cCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe---------------------------ecCCCCccccceECCCC
Confidence 34559999998877543 4688888875432110 11222223347899997
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEE-------------------EEEcCCCCCEEEEE-----ECCCcE
Q 013827 213 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQA-------------------VAWNHHSPQILLSG-----SFDRSV 268 (436)
Q Consensus 213 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~s~-----~~d~~i 268 (436)
..|+.++.++.|++||+.+++.......+...... +.|+|++ ..++.. ..+..|
T Consensus 93 -~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~l 170 (396)
T 3c5m_A 93 -RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHTNPTCRL 170 (396)
T ss_dssp -SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHTCCCEEE
T ss_pred -CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCC-cceeeeeeccCCCcceE
Confidence 58888888889999999988765555544432222 3456766 444333 456689
Q ss_pred EEEecCCCCCccceEeeeCCeeEEEeCC-CCCcEEEEEeCC------CcEEEEeCCCCCCCCCCCCCcccEEEecc--CC
Q 013827 269 VMKDARISTHSGFKWAVAADVESLAWDP-HAEHSFVVSLED------GTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DK 339 (436)
Q Consensus 269 ~~wd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~ 339 (436)
.+||+.+++... .......+..+.|+| ++. .++..+.+ ..|.+||+.... ...+..+ ..
T Consensus 171 ~~~d~~~g~~~~-~~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~----------~~~l~~~~~~~ 238 (396)
T 3c5m_A 171 IKVDIETGELEV-IHQDTAWLGHPIYRPFDDS-TVGFCHEGPHDLVDARMWLVNEDGSN----------VRKIKEHAEGE 238 (396)
T ss_dssp EEEETTTCCEEE-EEEESSCEEEEEEETTEEE-EEEEEECSCSSSCSCCCEEEETTSCC----------CEESSCCCTTE
T ss_pred EEEECCCCcEEe-eccCCcccccceECCCCCC-EEEEEecCCCCCCCceEEEEECCCCc----------eeEeeccCCCc
Confidence 999998766543 345667789999999 664 44443333 468888886541 1222222 23
Q ss_pred CeEEEEecCCCCCEEEEEeCC-----CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcC-CCCcEEEEEe----------
Q 013827 340 AVCTISYNPLVPNLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE-DSPFVLAIGG---------- 403 (436)
Q Consensus 340 ~v~~~~~~p~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~---------- 403 (436)
.+..+.|+|++ ..|+.++.+ +.|++||+.+++...+..... .. +.|+| +|+. ++.++
T Consensus 239 ~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~-l~~~~~~~p~~~~~~ 311 (396)
T 3c5m_A 239 SCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGSL-MVGDGCDAPVDVADA 311 (396)
T ss_dssp EEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSSE-EEEEECCC-------
T ss_pred cccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCce-EEEecCCcceeeccc
Confidence 57789999999 555554433 349999999887544433322 33 89999 9994 66544
Q ss_pred ------CCCcEEEEeCCCCcc
Q 013827 404 ------SKGKLEIWDTLSDAG 418 (436)
Q Consensus 404 ------~dg~i~iwd~~~~~~ 418 (436)
.++.|++||+.+++.
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 312 DSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp ---CCCCCCEEEEEETTTTBC
T ss_pred cccccCCCCcEEEEecccCce
Confidence 347899999987764
No 183
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.68 E-value=4.9e-13 Score=118.50 Aligned_cols=281 Identities=9% Similarity=0.061 Sum_probs=184.3
Q ss_pred ccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCC
Q 013827 73 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME 152 (436)
Q Consensus 73 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 152 (436)
...+.++++.|+|+++++....+ .|..|+.. + .............+.++++ ++++.++++...+
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~-----~v~~~d~~-~---~~~~~~~~~~~~~~~~i~~-------~~~g~l~v~~~~~ 77 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKAN-----MISCINLD-G---KITEYPLPTPDAKVMCLTI-------SSDGEVWFTENAA 77 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTT-----EEEEECTT-C---CEEEEECSSTTCCEEEEEE-------CTTSCEEEEETTT
T ss_pred CCCccceEECCCCCEEEEecCCC-----cEEEEcCC-C---CeEEecCCcccCceeeEEE-------CCCCCEEEeCCCC
Confidence 45689999999999887765444 78888766 3 2211110011133444544 7889988887778
Q ss_pred CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 153 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 232 (436)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~ 232 (436)
+.|..|+.+ ++ .... .+......+.++++.++| .++++...++.|.+||. +
T Consensus 78 ~~i~~~~~~-g~-~~~~-------------------------~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~ 128 (299)
T 2z2n_A 78 NKIGRITKK-GI-IKEY-------------------------TLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-D 128 (299)
T ss_dssp TEEEEECTT-SC-EEEE-------------------------ECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-T
T ss_pred CeEEEECCC-Cc-EEEE-------------------------eCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-C
Confidence 889999875 11 1110 011234568899999986 47777767889999998 5
Q ss_pred CeEEEE-EcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE-eeeCCeeEEEeCCCCCcEEEEEeCCCc
Q 013827 233 GKCNLT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDGT 310 (436)
Q Consensus 233 ~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~dg~ 310 (436)
++.... .......+..+++.+++ .++++...++.|..||. +.+...... .....+..+++++++ .++++...++.
T Consensus 129 g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~ 205 (299)
T 2z2n_A 129 GKIREYELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDD-ALWFVEIIGNK 205 (299)
T ss_dssp CCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTE
T ss_pred CCEEEecCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCC-CEEEEccCCce
Confidence 544332 23345678999999998 77777767789999998 443322111 123457899999987 56666667889
Q ss_pred EEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEE
Q 013827 311 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA 390 (436)
Q Consensus 311 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 390 (436)
|..||. ++. ........+...+..+++++++ .++++...++.|..||.. ++ ........+...+.+++
T Consensus 206 i~~~~~-~g~--------~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~~-g~-~~~~~~~~~~~~~~~i~ 273 (299)
T 2z2n_A 206 IGRITT-SGE--------ITEFKIPTPNARPHAITAGAGI-DLWFTEWGANKIGRLTSN-NI-IEEYPIQIKSAEPHGIC 273 (299)
T ss_dssp EEEECT-TCC--------EEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEEETT-TE-EEEEECSSSSCCEEEEE
T ss_pred EEEECC-CCc--------EEEEECCCCCCCceeEEECCCC-CEEEeccCCceEEEECCC-Cc-eEEEeCCCCCCccceEE
Confidence 999998 541 1111223345678999999998 666666578899999983 43 22333344456789999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 391 FSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 391 ~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
+ +++. ++++. ..+.|..++..++
T Consensus 274 ~-~~g~-l~v~~-~~~~l~~~~~~~~ 296 (299)
T 2z2n_A 274 F-DGET-IWFAM-ECDKIGKLTLIKD 296 (299)
T ss_dssp E-CSSC-EEEEE-TTTEEEEEEEC--
T ss_pred e-cCCC-EEEEe-cCCcEEEEEcCcc
Confidence 9 8887 45544 4677888887664
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.65 E-value=1.9e-13 Score=136.42 Aligned_cols=254 Identities=9% Similarity=0.020 Sum_probs=167.3
Q ss_pred CccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeC
Q 013827 72 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 151 (436)
Q Consensus 72 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 151 (436)
+...+..++|||||++||.+...++.....|++++...++.......+. ....+.| +|||+.|+.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-----~~~~~~w-------spDg~~l~~~~~ 190 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-----KFSCMAW-------THDGKGMFYNAY 190 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-----CSCCEEE-------CTTSSEEEEEEC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-----ccceEEE-------EeCCCEEEEEEE
Confidence 4446889999999999999877654434588899887763222111110 0124556 999999999988
Q ss_pred CCc----------------EEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcE
Q 013827 152 EPA----------------IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 215 (436)
Q Consensus 152 dg~----------------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 215 (436)
++. |++|++.++..... .......|...+..+.|+|+|+ +
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~-----------------------~v~~~~~~~~~~~~~~~SpDg~-~ 246 (710)
T 2xdw_A 191 PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI-----------------------LCAEFPDEPKWMGGAELSDDGR-Y 246 (710)
T ss_dssp CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE-----------------------EEECCTTCTTCEEEEEECTTSC-E
T ss_pred CCccccccccccccCCCCEEEEEECCCCcccce-----------------------EEeccCCCCeEEEEEEEcCCCC-E
Confidence 766 99999976442111 1111223556688999999986 5
Q ss_pred EEEEeC-----CCcEEEEeCCC------Ce-EEEEEcccCCCeEEEEEcCCCCCEEEEEECC---CcEEEEecCCCCC--
Q 013827 216 LASASA-----DKQVKIWDVAA------GK-CNLTLEHHTDKVQAVAWNHHSPQILLSGSFD---RSVVMKDARISTH-- 278 (436)
Q Consensus 216 l~s~~~-----dg~v~vwd~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~-- 278 (436)
|+.++. +..|++||+.+ +. ....+..+...+.. .|+++|..+++.+..+ ..|.+||+.+...
T Consensus 247 l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~ 325 (710)
T 2xdw_A 247 VLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK 325 (710)
T ss_dssp EEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGG
T ss_pred EEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccc
Confidence 555543 56899999976 43 35566556666655 4888884444444333 3699999987642
Q ss_pred ccceEeeeC--CeeEEEeCCCCCcEEEEEeCCCc--EEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEE
Q 013827 279 SGFKWAVAA--DVESLAWDPHAEHSFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 354 (436)
Q Consensus 279 ~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 354 (436)
...+..+.. .+..++|++++ .++++...++. |.+||+.++ .....+..+...+..+.++|++..++
T Consensus 326 ~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~g---------~~~~~l~~~~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 326 WKVLVPEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLATG---------ALLKIFPLEVGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp CEEEECCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTTC---------CEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred ceeccCCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCCC---------CEEEecCCCCceEEEEecCCCCCEEE
Confidence 222333333 57788888644 68888888885 556676554 33556666777888999999884455
Q ss_pred EEEeC---CCcEEEEECCCCC
Q 013827 355 ATGST---DKMVKLWDLSNNQ 372 (436)
Q Consensus 355 ~~~~~---d~~i~iwd~~~~~ 372 (436)
++.+. .++|++||+.+++
T Consensus 396 ~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEECSSCCCEEEEEETTSSS
T ss_pred EEEeCCCCCCEEEEEECCCCc
Confidence 44443 4789999998876
No 185
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.65 E-value=3.8e-14 Score=127.64 Aligned_cols=234 Identities=9% Similarity=0.021 Sum_probs=161.7
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 221 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 221 (436)
+++++++...++.|.+||..+++.+..+ ........+++++++ .++++...
T Consensus 53 ~~~lyv~~~~~~~v~viD~~t~~~~~~i----------------------------~~~~~p~~i~~~~~g-~lyv~~~~ 103 (328)
T 3dsm_A 53 DGIGWIVVNNSHVIFAIDINTFKEVGRI----------------------------TGFTSPRYIHFLSDE-KAYVTQIW 103 (328)
T ss_dssp TTEEEEEEGGGTEEEEEETTTCCEEEEE----------------------------ECCSSEEEEEEEETT-EEEEEEBS
T ss_pred CCEEEEEEcCCCEEEEEECcccEEEEEc----------------------------CCCCCCcEEEEeCCC-eEEEEECC
Confidence 4556666667899999999876654332 123567889998886 45555548
Q ss_pred CCcEEEEeCCCCeEEEEEcccC-----CCeEEEEEcCCCCCEEEEEE-CCCcEEEEecCCCCCccceEeeeCCeeEEEeC
Q 013827 222 DKQVKIWDVAAGKCNLTLEHHT-----DKVQAVAWNHHSPQILLSGS-FDRSVVMKDARISTHSGFKWAVAADVESLAWD 295 (436)
Q Consensus 222 dg~v~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~ 295 (436)
++.|.+||+.+++....+.... .....+++ .++ .++++.. .++.|.++|+.+.+... ..........++++
T Consensus 104 ~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD~~t~~~~~-~i~~g~~p~~i~~~ 180 (328)
T 3dsm_A 104 DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKIDTETDKVVD-ELTIGIQPTSLVMD 180 (328)
T ss_dssp CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEETTTTEEEE-EEECSSCBCCCEEC
T ss_pred CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEECCCCeEEE-EEEcCCCccceEEc
Confidence 8999999999998877775332 14556777 333 4455443 48999999999876554 23334557789999
Q ss_pred CCCCcEEEEEeCC----------CcEEEEeCCCCCCCCCCCCCcccEEEecc-CCCeEEEEecCCCCCEEEEEeCCCcEE
Q 013827 296 PHAEHSFVVSLED----------GTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVK 364 (436)
Q Consensus 296 ~~~~~~~~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~d~~i~ 364 (436)
|++ ++++++..+ +.|.++|..+. +....+... ......++|+|++ ..|+++.. .|.
T Consensus 181 ~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---------~v~~~~~~~~g~~p~~la~~~d~-~~lyv~~~--~v~ 247 (328)
T 3dsm_A 181 KYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETF---------TVEKQFKFKLGDWPSEVQLNGTR-DTLYWINN--DIW 247 (328)
T ss_dssp TTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTT---------EEEEEEECCTTCCCEEEEECTTS-CEEEEESS--SEE
T ss_pred CCC-CEEEEECCCccCCccccCCceEEEEECCCC---------eEEEEEecCCCCCceeEEEecCC-CEEEEEcc--EEE
Confidence 987 456655544 78999999876 333344322 2367899999998 67766654 899
Q ss_pred EEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEE----eCCCcEEEEeCCCCccccc
Q 013827 365 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG----GSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 365 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~~~ 421 (436)
+||..+++................++++|++..++++. ..++.|.+||.. ++.+.+
T Consensus 248 ~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~ 307 (328)
T 3dsm_A 248 RMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDE 307 (328)
T ss_dssp EEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEE
T ss_pred EEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEE
Confidence 99998876321111122235688999999655577776 678999999998 776654
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.63 E-value=6.7e-14 Score=124.20 Aligned_cols=228 Identities=10% Similarity=0.053 Sum_probs=154.5
Q ss_pred CCCCc-EEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 140 REKGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 140 s~~~~-~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
+|+++ +++++..++.|..|+..++ ... +..+...+.+++++|+|. ++++
T Consensus 36 d~~g~~l~~~~~~~~~i~~~~~~~~--~~~---------------------------~~~~~~~~~~l~~~~dg~-l~v~ 85 (296)
T 3e5z_A 36 VPARSAVIFSDVRQNRTWAWSDDGQ--LSP---------------------------EMHPSHHQNGHCLNKQGH-LIAC 85 (296)
T ss_dssp EGGGTEEEEEEGGGTEEEEEETTSC--EEE---------------------------EESSCSSEEEEEECTTCC-EEEE
T ss_pred eCCCCEEEEEeCCCCEEEEEECCCC--eEE---------------------------EECCCCCcceeeECCCCc-EEEE
Confidence 78898 7888888999999998754 111 223556789999999974 7777
Q ss_pred EeCCCcEEEEeCCCCeEEEEEccc----CCCeEEEEEcCCCCCEEEEE----E-------------CCCcEEEEecCCCC
Q 013827 219 ASADKQVKIWDVAAGKCNLTLEHH----TDKVQAVAWNHHSPQILLSG----S-------------FDRSVVMKDARIST 277 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~----~-------------~d~~i~~wd~~~~~ 277 (436)
...++.|.+||..+++........ ...+..++++|+| +++++. + ..+.|..++.. .
T Consensus 86 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g 162 (296)
T 3e5z_A 86 SHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--G 162 (296)
T ss_dssp ETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--S
T ss_pred ecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC--C
Confidence 766789999999888754443221 2346789999999 777763 2 12355555544 2
Q ss_pred CccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcc---cEEEeccCCCeEEEEecCCCCCEE
Q 013827 278 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQS---SFTLHAHDKAVCTISYNPLVPNLL 354 (436)
Q Consensus 278 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l 354 (436)
...........+..++|+|++. .+++.+.++.|.+|++.... .. ...+..+...+..++++++| +++
T Consensus 163 ~~~~~~~~~~~~~gi~~s~dg~-~lv~~~~~~~i~~~~~~~~g--------~~~~~~~~~~~~~~~p~~i~~d~~G-~l~ 232 (296)
T 3e5z_A 163 TLSAPIRDRVKPNGLAFLPSGN-LLVSDTGDNATHRYCLNARG--------ETEYQGVHFTVEPGKTDGLRVDAGG-LIW 232 (296)
T ss_dssp CEEEEECCCSSEEEEEECTTSC-EEEEETTTTEEEEEEECSSS--------CEEEEEEEECCSSSCCCSEEEBTTS-CEE
T ss_pred CEEEeecCCCCCccEEECCCCC-EEEEeCCCCeEEEEEECCCC--------cCcCCCeEeeCCCCCCCeEEECCCC-CEE
Confidence 2332334455678999999985 45888888999999987221 11 12223345567789999998 666
Q ss_pred EEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEE-cCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 355 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF-SEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 355 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
++. ++.|.+||.. ++ .+..+..+.. +.+++| .|+++. |.+++.+ .+.-++..+.+.
T Consensus 233 v~~--~~~v~~~~~~-g~--~~~~~~~~~~-~~~~~f~~~d~~~-L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 233 ASA--GDGVHVLTPD-GD--ELGRVLTPQT-TSNLCFGGPEGRT-LYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp EEE--TTEEEEECTT-SC--EEEEEECSSC-CCEEEEESTTSCE-EEEEETT-EEEEEECSCCBC
T ss_pred EEc--CCeEEEECCC-CC--EEEEEECCCC-ceeEEEECCCCCE-EEEEcCC-eEEEEEcccccc
Confidence 555 7899999987 44 3344444555 889999 588885 5556555 455566655443
No 187
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.63 E-value=3.3e-13 Score=120.71 Aligned_cols=242 Identities=10% Similarity=0.075 Sum_probs=159.8
Q ss_pred CCCCcEEEE-------eeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCC-
Q 013827 140 REKGNFMAV-------GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE- 211 (436)
Q Consensus 140 s~~~~~l~~-------g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~- 211 (436)
+++++++++ +..++.|.+||..+++.... .. ....++...+.+++++++
T Consensus 26 ~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~----------------------~~~~~~~~~~~~i~~~~~~ 82 (314)
T 1pjx_A 26 DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CK----------------------PEVNGYGGIPAGCQCDRDA 82 (314)
T ss_dssp CTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE-EC----------------------CEETTEECCEEEEEECSSS
T ss_pred CCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEE-Ee----------------------cccCCCCCCCceEEEecCC
Confidence 788988888 67789999999765443110 00 001135567899999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEE-Ecc----cCCCeEEEEEcCCCCCEEEEEECC---------------CcEEEE
Q 013827 212 FRNILASASADKQVKIWDVAAGKCNLT-LEH----HTDKVQAVAWNHHSPQILLSGSFD---------------RSVVMK 271 (436)
Q Consensus 212 ~~~~l~s~~~dg~v~vwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~l~s~~~d---------------~~i~~w 271 (436)
| .++++ +..+.|.+||.. ++.... ... ....+.++++++++ .++++...+ +.|..+
T Consensus 83 g-~l~v~-~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (314)
T 1pjx_A 83 N-QLFVA-DMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCF 158 (314)
T ss_dssp S-EEEEE-ETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred C-cEEEE-ECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEE
Confidence 5 34444 444579999988 665433 221 12357899999998 777766554 567777
Q ss_pred ecCCCCCccceEeeeCCeeEEEeC----CCCCcEEEEEeCCCcEEEEeCC-CCCCCCCCCCCcccEEEeccC-CCeEEEE
Q 013827 272 DARISTHSGFKWAVAADVESLAWD----PHAEHSFVVSLEDGTIKGFDIR-TAKSDPDSTSQQSSFTLHAHD-KAVCTIS 345 (436)
Q Consensus 272 d~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~-~~v~~~~ 345 (436)
|.. .+ .............++++ |++..++++...++.|.+||+. .+... .......+..+. ..+..++
T Consensus 159 ~~~-g~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~----~~~~~~~~~~~~~~~p~~i~ 232 (314)
T 1pjx_A 159 TTD-GQ-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE----NKKVWGHIPGTHEGGADGMD 232 (314)
T ss_dssp CTT-SC-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE----EEEEEEECCCCSSCEEEEEE
T ss_pred CCC-CC-EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccc----cceEEEECCCCCCCCCCceE
Confidence 654 32 22233444567889999 9875455666678999999976 22100 000112222333 5578899
Q ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 346 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 346 ~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
+++++ +++++...++.|.+||..+++.... ...+...+.+++|+|+++.++++...++.|..|++....
T Consensus 233 ~d~~G-~l~v~~~~~~~i~~~d~~~g~~~~~--~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 233 FDEDN-NLLVANWGSSHIEVFGPDGGQPKMR--IRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EBTTC-CEEEEEETTTEEEEECTTCBSCSEE--EECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred ECCCC-CEEEEEcCCCEEEEEcCCCCcEeEE--EeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 99998 7888877889999999986653332 333446799999999998656666677899999987543
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.63 E-value=5.9e-13 Score=127.74 Aligned_cols=266 Identities=12% Similarity=0.059 Sum_probs=176.1
Q ss_pred EEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCC--CCCCCcceeeecccchh
Q 013827 101 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLD--VIDEVQPHVILGGIDEE 178 (436)
Q Consensus 101 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~ 178 (436)
.|.+++.... .+.. .......+.++.+ +|||+++++++.|+.|.+||+. +.+.+..+
T Consensus 178 ~V~viD~~t~---~v~~--~i~~g~~p~~v~~-------SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i--------- 236 (567)
T 1qks_A 178 QIALIDGSTY---EIKT--VLDTGYAVHISRL-------SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI--------- 236 (567)
T ss_dssp EEEEEETTTC---CEEE--EEECSSCEEEEEE-------CTTSCEEEEEETTSEEEEEETTSSSCCEEEEE---------
T ss_pred eEEEEECCCC---eEEE--EEeCCCCccceEE-------CCCCCEEEEEcCCCeEEEEECCCCCCcEeEEE---------
Confidence 8888888765 2221 1122223334444 9999999999999999999995 43332221
Q ss_pred hhhhcccCCCcccccccccCcccceeEEEec----CCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcc----------cCC
Q 013827 179 KKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN----KEFRNILASASADKQVKIWDVAAGKCNLTLEH----------HTD 244 (436)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~----------~~~ 244 (436)
.. ......++|+ |+|+.++++...+++|.++|..+.+.+..+.. |..
T Consensus 237 ------------------~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~ 297 (567)
T 1qks_A 237 ------------------KI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE 297 (567)
T ss_dssp ------------------EC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC
T ss_pred ------------------ec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCC
Confidence 11 2235789999 69865555556679999999999988877642 212
Q ss_pred -CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc-ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 013827 245 -KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD 322 (436)
Q Consensus 245 -~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~ 322 (436)
.+..+..+++++.+++....+|.|.++|........ ...........+.|+|++..++++...++.|.++|+.+.
T Consensus 298 ~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~--- 374 (567)
T 1qks_A 298 PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG--- 374 (567)
T ss_dssp CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---
T ss_pred CceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC---
Confidence 678889999886677777778999999987654222 122334457788999999766777778899999999987
Q ss_pred CCCCCCcccEEEec-----cCCCeEEEEecCCCCCEEEEEe-CCCcEEEEECCCCC-----ceeEEeeCCCCCcEEEEEE
Q 013827 323 PDSTSQQSSFTLHA-----HDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLSNNQ-----PSCIASRNPKAGAVFSVAF 391 (436)
Q Consensus 323 ~~~~~~~~~~~~~~-----~~~~v~~~~~~p~~~~~l~~~~-~d~~i~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~ 391 (436)
+.+..+.. |.+.-.. -++|++..+++++. .++.|.++|....+ ...+..+......-..+..
T Consensus 375 ------kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~ 447 (567)
T 1qks_A 375 ------KLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKT 447 (567)
T ss_dssp ------EEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC
T ss_pred ------cEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEe
Confidence 33333332 3221112 25887535555654 46899999998722 2234444433223344779
Q ss_pred cCCCCcEEEEEeC------CCcEEEEeCCCC
Q 013827 392 SEDSPFVLAIGGS------KGKLEIWDTLSD 416 (436)
Q Consensus 392 ~~~~~~~l~s~~~------dg~i~iwd~~~~ 416 (436)
+|+++++++.... .+.|.++|+.+.
T Consensus 448 ~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 448 HPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp CTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 9999975553311 358999999876
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.63 E-value=6.3e-14 Score=126.59 Aligned_cols=236 Identities=8% Similarity=0.034 Sum_probs=160.4
Q ss_pred CCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEE
Q 013827 138 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 217 (436)
Q Consensus 138 ~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 217 (436)
.|++++..++..+.++.++.|.-. .. ..+..+...+.+++|+|+| .+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~---~~---------------------------~~~~~~~~~~~~~~~~~~g-~l~~ 60 (333)
T 2dg1_A 12 FYSGKSNSAVPIISESELQTITAE---PW---------------------------LEISKKGLQLEGLNFDRQG-QLFL 60 (333)
T ss_dssp CSCGGGGCSSCCCCGGGSCEEECE---EE---------------------------EEEESSCCCEEEEEECTTS-CEEE
T ss_pred eecCCccceeEEeecccCcccccc---ee---------------------------EEEeccCccccCcEECCCC-CEEE
Confidence 347777777777778888888321 11 1122455677899999997 4777
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECC----CcEEEEecCCCCCccceE--eeeCCeeE
Q 013827 218 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD----RSVVMKDARISTHSGFKW--AVAADVES 291 (436)
Q Consensus 218 s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~~~~~--~~~~~i~~ 291 (436)
++..++.|.+||..+++.......+...+.++++++++ .++++...+ +.|.+||..+........ .....+..
T Consensus 61 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 139 (333)
T 2dg1_A 61 LDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDD 139 (333)
T ss_dssp EETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEE
T ss_pred EECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccc
Confidence 88889999999998887655544466789999999999 777776666 689999988765432111 13456889
Q ss_pred EEeCCCCCcEEEEEeC------CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEE-EEEeCCCcEE
Q 013827 292 LAWDPHAEHSFVVSLE------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL-ATGSTDKMVK 364 (436)
Q Consensus 292 ~~~~~~~~~~~~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~d~~i~ 364 (436)
++++|++ .++++... .+.|..+|.... . ...+......+..++|+|++ ..| ++.+.++.|.
T Consensus 140 i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~---------~-~~~~~~~~~~~~~i~~~~dg-~~l~v~~~~~~~i~ 207 (333)
T 2dg1_A 140 MVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFR---------T-VTPIIQNISVANGIALSTDE-KVLWVTETTANRLH 207 (333)
T ss_dssp EEECTTS-CEEEEECCCBTTBCCEEEEEECTTSC---------C-EEEEEEEESSEEEEEECTTS-SEEEEEEGGGTEEE
T ss_pred eEECCCC-CEEEEeccccccCCCceEEEEeCCCC---------E-EEEeecCCCcccceEECCCC-CEEEEEeCCCCeEE
Confidence 9999987 45555543 345666665443 1 22232333457899999998 644 5555688999
Q ss_pred EEECCC-CCceeE------EeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccc
Q 013827 365 LWDLSN-NQPSCI------ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 420 (436)
Q Consensus 365 iwd~~~-~~~~~~------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (436)
+||+.+ +..... ....++ ..+..++++++|. ++++...++.|.+||. +++.+.
T Consensus 208 ~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~-~g~~~~ 267 (333)
T 2dg1_A 208 RIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNK-RGYPIG 267 (333)
T ss_dssp EEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECT-TSCEEE
T ss_pred EEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECC-CCCEEE
Confidence 999964 222111 112222 4678899999998 5776777889999998 454443
No 190
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.62 E-value=2.2e-13 Score=136.56 Aligned_cols=286 Identities=8% Similarity=0.033 Sum_probs=174.0
Q ss_pred eccCCceEEEEEecCCcceeEEEEEecC---CCCCCceeeecccccCc---CcceeecccCCCCCCCCCcEEEEeeCC--
Q 013827 81 INPNDAVIVCARNEDDVSHLEVYILEES---DGGDPNLYVHHHIIIPA---FPLCMAWLDCPLKDREKGNFMAVGSME-- 152 (436)
Q Consensus 81 ~sp~~~~l~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~l~~g~~d-- 152 (436)
.+|+|++++....++......+|..+.. .+. ...+......... ......| ||||++||.+..+
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~lld~~~l~~~~~~~~~~~~~-------SPDG~~la~~~~~~G 185 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTK-GRVLLDPNTWAKDGATALDAWAA-------SDDGRLLAYSVQDGG 185 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCC-CEEEECGGGCC----EEEEEEEE-------CTTSSEEEEEEEETT
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCC-CEEEECHHHhccCCCEEEEeEEE-------CCCCCEEEEEEcCCC
Confidence 3599999998877665334577877754 322 2222211111100 1123344 9999999987654
Q ss_pred ---CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCc-----
Q 013827 153 ---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ----- 224 (436)
Q Consensus 153 ---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~----- 224 (436)
..|++||+.+++..... .+...+..++|+|+ . .|+.++.++.
T Consensus 186 ~e~~~i~v~dl~tg~~~~~~----------------------------~~~~~~~~~~wspD-~-~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 186 SDWRTVKFVGVADGKPLADE----------------------------LKWVKFSGLAWLGN-D-ALLYSRFAEPKEGQA 235 (741)
T ss_dssp CSEEEEEEEETTTCCEEEEE----------------------------EEEEESCCCEESTT-S-EEEEEECCCC-----
T ss_pred CceEEEEEEECCCCCCCCcc----------------------------CCCceeccEEEECC-C-EEEEEEecCcccccc
Confidence 46999999876653210 12222467899999 6 5555555543
Q ss_pred ---------EEEEeCCCCeE--EEEEc--ccCCCeEEEEEcCCCCCEEEEEECCC-----cEEEEecCCC--CCccceEe
Q 013827 225 ---------VKIWDVAAGKC--NLTLE--HHTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARIS--THSGFKWA 284 (436)
Q Consensus 225 ---------v~vwd~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~--~~~~~~~~ 284 (436)
|++|++.++.. ...+. .+...+..+.|+|+| ++|+..+.++ .|.+||+.++ .....+..
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~ 314 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP 314 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC
T ss_pred cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCCCCcccEEecC
Confidence 89999977652 22333 233458899999999 6666666443 8999999876 31222333
Q ss_pred eeCCeeEEEeCCCCCcEEEEEeC---CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCC
Q 013827 285 VAADVESLAWDPHAEHSFVVSLE---DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK 361 (436)
Q Consensus 285 ~~~~i~~~~~~~~~~~~~~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~ 361 (436)
......... .|++..+++.... ++.|.+||+.+.. ......+..+...+..+.+. .+ .++++...|+
T Consensus 315 ~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-------~~~~~l~~~~~~~l~~~~~~-~~-~lv~~~~~dg 384 (741)
T 1yr2_A 315 DLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST-------PRFDTVVPESKDNLESVGIA-GN-RLFASYIHDA 384 (741)
T ss_dssp SSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS-------CEEEEEECCCSSEEEEEEEE-BT-EEEEEEEETT
T ss_pred CCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc-------cccEEEecCCCCeEEEEEEE-CC-EEEEEEEECC
Confidence 333444443 4777554444432 4559999987631 01122333444556677777 33 7888888898
Q ss_pred cEEEEECC-CCCceeEEeeCC-CCCcEEEEEEcCCCCcEEEEEeC---CCcEEEEeCCCCc
Q 013827 362 MVKLWDLS-NNQPSCIASRNP-KAGAVFSVAFSEDSPFVLAIGGS---KGKLEIWDTLSDA 417 (436)
Q Consensus 362 ~i~iwd~~-~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~ 417 (436)
..+||.+. +++ ....+.. +.+.+..+.++|++..++++.++ .+.|++||+.+++
T Consensus 385 ~~~l~~~~~~g~--~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 385 KSQVLAFDLDGK--PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEEETTSC--EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEEeCCCC--ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 87777554 233 2333332 35678999999998865554443 4789999998876
No 191
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.61 E-value=6.5e-14 Score=127.23 Aligned_cols=228 Identities=12% Similarity=0.157 Sum_probs=145.8
Q ss_pred cccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCC-
Q 013827 74 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME- 152 (436)
Q Consensus 74 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d- 152 (436)
..+..++|||||+.|+.+..++......||+++...++...+.... . ...+.| +|||+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-----~-~~~~~w-------spdg~~l~~~~~~~ 125 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-----N-IRSLEW-------NEDSRKLLIVGFKR 125 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-----E-EEEEEE-------CTTSSEEEEEEECC
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-----C-ccceeE-------CCCCCEEEEEEccC
Confidence 3577899999999999887654223457899887765322222222 1 345666 9999999988642
Q ss_pred --------------------------CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEE
Q 013827 153 --------------------------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 206 (436)
Q Consensus 153 --------------------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 206 (436)
..|.+||+.+++.... +.. . .+..+
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~---------------------------l~~-~-~~~~~ 176 (347)
T 2gop_A 126 REDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEE---------------------------FEK-P-RFSSG 176 (347)
T ss_dssp CC---------CCCC---------CEEEEEEEETTTTEEEEE---------------------------EEE-E-TTCEE
T ss_pred CCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEee---------------------------ecC-C-Ccccc
Confidence 5688888875432111 112 2 67889
Q ss_pred EecCCCCcEEEEEeCCC-------cEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECC--------CcEEEE
Q 013827 207 AWNKEFRNILASASADK-------QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD--------RSVVMK 271 (436)
Q Consensus 207 ~~~~~~~~~l~s~~~dg-------~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--------~~i~~w 271 (436)
+|+|+| +++++..++ ...||.+.+++. ..+..+ ..+..+ +|+| ..|+.++.+ ..|.+|
T Consensus 177 ~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~ 249 (347)
T 2gop_A 177 IWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIY 249 (347)
T ss_dssp EEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEE
T ss_pred cCCCCe--EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCC-CEEEEEEccccCCccccceEEEE
Confidence 999996 777776542 344444445553 344334 455544 9999 666665543 368888
Q ss_pred ecCCCCCccceEeeeCCeeE-EEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC
Q 013827 272 DARISTHSGFKWAVAADVES-LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 350 (436)
Q Consensus 272 d~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 350 (436)
| ++........+...+.. +.|+ ++ ++++++.++.+++| +.++ . ...+..+...+.+++|+|
T Consensus 250 d--~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g---------~-~~~~~~~~~~v~~~~~s~-- 311 (347)
T 2gop_A 250 D--GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDG---------E-IKPIAKGRHWIMGFDVDE-- 311 (347)
T ss_dssp C--SSCEEESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESS---------S-EEEEECSSSEEEEEEESS--
T ss_pred C--CCceEeccccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCC---------c-eEEEecCCCeEEeeeeeC--
Confidence 8 33322222234556775 8898 65 88889999999999 8733 2 234444577899999998
Q ss_pred CCEEEEEeCCCcE-EEEECC
Q 013827 351 PNLLATGSTDKMV-KLWDLS 369 (436)
Q Consensus 351 ~~~l~~~~~d~~i-~iwd~~ 369 (436)
.++++++.++.. .+|.+.
T Consensus 312 -~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 312 -IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp -SEEEEEECSSSCCEEEEES
T ss_pred -cEEEEEcCCCChHHheEeC
Confidence 467777766654 677665
No 192
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.61 E-value=2e-13 Score=119.27 Aligned_cols=241 Identities=10% Similarity=0.034 Sum_probs=159.5
Q ss_pred ccccceeccCCceEE-EEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCC
Q 013827 75 DLEDMTINPNDAVIV-CARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP 153 (436)
Q Consensus 75 ~v~~~~~sp~~~~l~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 153 (436)
...+++++|+|++++ +...++ .|..|+..... ..... ......+.++++ +++++++++.. ++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~-----~i~~~~~~~~~---~~~~~-~~~~~~p~~i~~-------~~~g~l~v~~~-~~ 87 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYG-----RVVKLATGSTG---TTVLP-FNGLYQPQGLAV-------DGAGTVYVTDF-NN 87 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSC-----EEEEECC--------EECC-CCSCCSCCCEEE-------CTTCCEEEEET-TT
T ss_pred CccceEECCCCCEEEEccCCCC-----cEEEecCCCcc---cceEe-eCCcCCcceeEE-------CCCCCEEEEcC-CC
Confidence 678899999999776 433333 67777765431 11100 001122344444 78898766666 88
Q ss_pred cEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 154 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG 233 (436)
Q Consensus 154 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~ 233 (436)
.|.+||......... .......+.++++.++| .++++...++.|.+|+..+.
T Consensus 88 ~i~~~d~~~~~~~~~---------------------------~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~ 139 (270)
T 1rwi_B 88 RVVTLAAGSNNQTVL---------------------------PFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSK 139 (270)
T ss_dssp EEEEECTTCSCCEEC---------------------------CCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCC
T ss_pred EEEEEeCCCceEeee---------------------------ecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCc
Confidence 999999764322100 01223568899999997 47777777889999986655
Q ss_pred eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEE
Q 013827 234 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 313 (436)
Q Consensus 234 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i 313 (436)
............+.++++++++ +++++...++.|.+||................+..+++++++ .++++...++.|.+
T Consensus 140 ~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~ 217 (270)
T 1rwi_B 140 TQTVLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVK 217 (270)
T ss_dssp SCEECCCCSCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEE
T ss_pred eeEeeccccCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCC-CEEEEECCCCcEEE
Confidence 4333222233467889999998 777777778899999987654332222222568899999987 67777778899999
Q ss_pred EeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 013827 314 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 314 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
||..... .......+...+.+++++|++ .++++...++.|+++++...+
T Consensus 218 ~~~~~~~---------~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 218 LLAGSTT---------STVLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp ECTTCSC---------CEECCCCSCSCEEEEEECTTC-CEEEEEGGGTEEEEECCCGGG
T ss_pred EcCCCCc---------ceeeccCCCCCceeEEECCCC-CEEEEECCCCEEEEEcCCCcc
Confidence 9986541 111111233568999999998 788888889999999987654
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.60 E-value=4.4e-13 Score=117.19 Aligned_cols=231 Identities=10% Similarity=-0.014 Sum_probs=162.4
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcc-cceeEEEecCCCCcEEEEE
Q 013827 141 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT-DSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 141 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~ 219 (436)
..+++|++++.++.|.+||.++++.+.. +..+. ..+.++.+.|+| ++++
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~---------------------------~~~~~~~~~~~~~~~pdG-~ilv-- 52 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWE---------------------------YPLEKGWECNSVAATKAG-EILF-- 52 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEE---------------------------EECCTTCCCCEEEECTTS-CEEE--
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEE---------------------------eCCCccCCCcCeEECCCC-CEEE--
Confidence 3578899999999999999977665533 22233 467889999997 4777
Q ss_pred eCCCcEEEEeCCCCeEEEEEccc-CCCeEEEEEcCCCCCEEEEEEC-CCcEEEEecCCCCCccceEe------eeCCeeE
Q 013827 220 SADKQVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSGFKWA------VAADVES 291 (436)
Q Consensus 220 ~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~------~~~~i~~ 291 (436)
+.++.|..||. +++.+..+..+ ...+.++.+.++| +++++.+. ++.+..+|. +++....... .......
T Consensus 53 s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~ 129 (276)
T 3no2_A 53 SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQ 129 (276)
T ss_dssp ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSC
T ss_pred eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccC
Confidence 44678999998 88888888754 3578899999999 88888777 777777775 3332221110 1123445
Q ss_pred EEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 013827 292 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 371 (436)
Q Consensus 292 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~ 371 (436)
+++.+++ +++++...++.|..||.. + +.+..+... ..+..+.+.+++ ++++++..++.|..+|..++
T Consensus 130 v~~~~~G-~~lv~~~~~~~v~~~d~~-G---------~~~w~~~~~-~~~~~~~~~~~g-~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 130 INKNKKG-NYLVPLFATSEVREIAPN-G---------QLLNSVKLS-GTPFSSAFLDNG-DCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp CEECTTS-CEEEEETTTTEEEEECTT-S---------CEEEEEECS-SCCCEEEECTTS-CEEEECBTTSEEEEECTTTC
T ss_pred ceECCCC-CEEEEecCCCEEEEECCC-C---------CEEEEEECC-CCccceeEcCCC-CEEEEeCCCCeEEEEeCcCC
Confidence 6778877 688889999999999987 6 446666544 345667888888 88888888889999999988
Q ss_pred CceeEEeeCCC------CCcEEEEEEcCCCCcEEEEEeCC--------CcEEEEeC-CCCcccc
Q 013827 372 QPSCIASRNPK------AGAVFSVAFSEDSPFVLAIGGSK--------GKLEIWDT-LSDAGIS 420 (436)
Q Consensus 372 ~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~~~d--------g~i~iwd~-~~~~~~~ 420 (436)
+. +..+..+ ...+..++..++|. ++++.... +..+++.+ .+++.+.
T Consensus 197 ~~--~w~~~~~~~~~~~l~~~~~~~~~~~G~-i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W 257 (276)
T 3no2_A 197 RI--VRRVNANDIEGVQLFFVAQLFPLQNGG-LYICNWQGHDREAGKGKHPQLVEIDSEGKVVW 257 (276)
T ss_dssp CE--EEEEEGGGSBSCCCSEEEEEEECTTSC-EEEEEECTTCTTGGGSCCCSEEEECTTSBEEE
T ss_pred cE--EEEecCCCCCCccccccccceEcCCCC-EEEEeccCccccccccCCceEEEECCCCCEEE
Confidence 84 3333221 23478899999998 56655311 23456666 3455443
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.59 E-value=7.8e-12 Score=114.13 Aligned_cols=291 Identities=12% Similarity=0.034 Sum_probs=177.5
Q ss_pred eeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEee---------
Q 013827 80 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS--------- 150 (436)
Q Consensus 80 ~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~--------- 150 (436)
...|+++++.+....+.-....|.+++.... .+. ...+....+ .+.++|||++|+++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~---~~~--~~i~~g~~p--------~i~~spDg~~lyv~n~~~~~~~rg 93 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSG---SIL--GHVNGGFLP--------NPVAAHSGSEFALASTSFSRIAKG 93 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCC---eEE--EEecCCCCC--------CeEECCCCCEEEEEeccccccccC
Confidence 4458888777764311101116778877665 222 112222222 334499999999886
Q ss_pred -CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC--CCcEEE
Q 013827 151 -MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--DKQVKI 227 (436)
Q Consensus 151 -~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--dg~v~v 227 (436)
.++.|.+||..+.+....+...+. .. . .+......++|+|+|+ +|+.+.. ++.|.+
T Consensus 94 ~~~~~v~viD~~t~~~~~~i~~~~~------------------~~-~-~~g~~p~~~~~spDG~-~l~v~n~~~~~~v~v 152 (373)
T 2mad_H 94 KRTDYVEVFDPVTFLPIADIELPDA------------------PR-F-DVGPYSWMNANTPNNA-DLLFFQFAAGPAVGL 152 (373)
T ss_pred CCCCeEEEEECCCCcEEEEEECCCc------------------cc-c-ccCCCccceEECCCCC-EEEEEecCCCCeEEE
Confidence 367899999987665443321100 00 0 0112345899999985 6666653 578999
Q ss_pred EeCCCCeEEEE-EcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE-----eeeCC-eeEEEeCCCCCc
Q 013827 228 WDVAAGKCNLT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-----AVAAD-VESLAWDPHAEH 300 (436)
Q Consensus 228 wd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-----~~~~~-i~~~~~~~~~~~ 300 (436)
+| .+++.+.. +... . ++.+.|++...+++.+.||.+.++|. +.+...... ....+ .....+.+++..
T Consensus 153 iD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 226 (373)
T 2mad_H 153 VV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR 226 (373)
T ss_pred EE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCE
Confidence 99 99988877 6422 2 24566777677788889999999999 655442111 11111 123445665544
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec----------cCCCeEEEEecCCCCCEEEEEeC----------C
Q 013827 301 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA----------HDKAVCTISYNPLVPNLLATGST----------D 360 (436)
Q Consensus 301 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~p~~~~~l~~~~~----------d 360 (436)
++++. ..+.+.+.|+..... ..+..+.. .......+.++|++ ..++++.. .
T Consensus 227 ~~~~~-~~~~v~vid~~~~~~-------~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~-~~lyV~~~~~~~~~~~~~~ 297 (373)
T 2mad_H 227 IVWPV-YSGKILQADISAAGA-------TNKAPIDALSGGRKADTWRPGGWQQVAYLKSS-DGIYLLTSEQSAWKLHAAA 297 (373)
T ss_pred EEEEc-CCceEEEEeccCCcc-------eEeeeeeecCCcccccceecCceEeEEECCCC-CEEEEEeccCCcccccCCC
Confidence 45444 678899999875421 11111110 12334457899998 55555432 3
Q ss_pred CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEe-CCCcEEEEeCCCCcccccc
Q 013827 361 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 361 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~ 422 (436)
+.|.++|..+.+.. ..+.. .....+++|+|||+++++++. .++.|.+||+.+++.+.+.
T Consensus 298 ~~V~VID~~t~~vv--~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 298 KEVTSVTGLVGQTS--SQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CeEEEEECCCCEEE--EEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 57999999988743 33332 225789999999994466565 5899999999999988763
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.58 E-value=2.3e-13 Score=135.40 Aligned_cols=254 Identities=9% Similarity=-0.001 Sum_probs=163.3
Q ss_pred CCccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCc-ceeecccCCCCCCCCCcEEEEe
Q 013827 71 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFP-LCMAWLDCPLKDREKGNFMAVG 149 (436)
Q Consensus 71 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~g 149 (436)
+|...+..++|||||++||.+...++.....|++++...++... .. .++... ..+.| +|||+.|+.+
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~---~~~~~~~~~~~w-------spDg~~l~~~ 185 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VD---VIEGGKYATPKW-------TPDSKGFYYE 185 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SC---CBSCCTTCCCEE-------CTTSSEEEEE
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--Cc---ccCcccccceEE-------ecCCCEEEEE
Confidence 44567899999999999998766543223588888887763210 10 111111 23444 9999999999
Q ss_pred eCCCc-------------EEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEE
Q 013827 150 SMEPA-------------IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 216 (436)
Q Consensus 150 ~~dg~-------------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 216 (436)
+.|.. |++|++.++..... +......|...+..+.|+|+|+ +|
T Consensus 186 ~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~-----------------------lv~~~~~~~~~~~~~~~SpDG~-~l 241 (695)
T 2bkl_A 186 WLPTDPSIKVDERPGYTTIRYHTLGTEPSKDT-----------------------VVHERTGDPTTFLQSDLSRDGK-YL 241 (695)
T ss_dssp ECCCCTTSCGGGGGGGCEEEEEETTSCGGGCE-----------------------EEECCCCCTTCEEEEEECTTSC-CE
T ss_pred EecCCCCCccccCCCCCEEEEEECCCCchhce-----------------------EEEecCCCCEEEEEEEECCCCC-EE
Confidence 98776 99999976542211 1112234566789999999986 55
Q ss_pred EEEeCCC----cEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEE---CCCcEEEEecCCCCC--ccceEee--
Q 013827 217 ASASADK----QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS---FDRSVVMKDARISTH--SGFKWAV-- 285 (436)
Q Consensus 217 ~s~~~dg----~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~--~~~~~~~-- 285 (436)
+.++.++ .|.+|+..+++ ...+..+...+....+ +++ .+++.+. .++.|.+||+.+... ...+..+
T Consensus 242 ~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 318 (695)
T 2bkl_A 242 FVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS 318 (695)
T ss_dssp EEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS
T ss_pred EEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC
Confidence 5555444 67777765554 3444445556666666 677 4555544 257899999987653 1222322
Q ss_pred eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEecc-CCCeEEEEecCCCCCEEEEEeC---CC
Q 013827 286 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGST---DK 361 (436)
Q Consensus 286 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~---d~ 361 (436)
...+..++|+ +..++++...|+..++|.+... ......+..+ ...+..+.++|++..++++.+. .+
T Consensus 319 ~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~--------g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~ 388 (695)
T 2bkl_A 319 SASLLSVSIV--GGHLSLEYLKDATSEVRVATLK--------GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPR 388 (695)
T ss_dssp SCEEEEEEEE--TTEEEEEEEETTEEEEEEEETT--------CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEE
T ss_pred CCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCC--------CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence 3447778887 3468888899999888866521 0223344444 5667888899988444444433 46
Q ss_pred cEEEEECCCCCc
Q 013827 362 MVKLWDLSNNQP 373 (436)
Q Consensus 362 ~i~iwd~~~~~~ 373 (436)
+|++||+.+++.
T Consensus 389 ~v~~~d~~~g~~ 400 (695)
T 2bkl_A 389 QIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEETTTCCE
T ss_pred EEEEEECCCCcE
Confidence 799999988774
No 196
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.58 E-value=1.1e-11 Score=109.88 Aligned_cols=279 Identities=10% Similarity=0.039 Sum_probs=180.2
Q ss_pred ccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCC
Q 013827 73 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME 152 (436)
Q Consensus 73 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 152 (436)
...+.++++.|+|+++++...++ .|..++.. . .............+..+.+ +++++++++...+
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~-----~v~~~~~~-~---~~~~~~~~~~~~~~~~i~~-------~~~g~l~v~~~~~ 82 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKAN-----KISSLDQS-G---RIKEFEVPTPDAKVMCLIV-------SSLGDIWFTENGA 82 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTT-----EEEEECTT-S---CEEEEECSSTTCCEEEEEE-------CTTSCEEEEETTT
T ss_pred CCCcceeeECCCCCEEEEcCCCC-----eEEEECCC-C---ceEEEECCCCCCcceeEEE-------CCCCCEEEEecCC
Confidence 35678999999999888765444 77778766 3 1111110001123444444 7889888877777
Q ss_pred CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 153 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 232 (436)
Q Consensus 153 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~ 232 (436)
+.|..||.. ++. ... ........+.++++.++| .++++...++.|..+|..
T Consensus 83 ~~v~~~d~~-g~~-~~~-------------------------~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~- 133 (300)
T 2qc5_A 83 NKIGKLSKK-GGF-TEY-------------------------PLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD- 133 (300)
T ss_dssp TEEEEECTT-SCE-EEE-------------------------ECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-
T ss_pred CeEEEECCC-CCe-EEe-------------------------cCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-
Confidence 889999876 322 110 011233568899999986 477666667899999987
Q ss_pred CeEEEE-EcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE-eeeCCeeEEEeCCCCCcEEEEEeCCCc
Q 013827 233 GKCNLT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDGT 310 (436)
Q Consensus 233 ~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~dg~ 310 (436)
++.... +......+..+++.+++ .++++...++.|..+|. +........ .....+..+++++++ .++++....+.
T Consensus 134 g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~ 210 (300)
T 2qc5_A 134 GTIYEYDLPNKGSYPAFITLGSDN-ALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNK 210 (300)
T ss_dssp SCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTE
T ss_pred CCEEEccCCCCCCCceeEEECCCC-CEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCC-CEEEEccCCCE
Confidence 554422 33345678999999998 76666666788999998 333222111 122458899999977 56666667788
Q ss_pred EEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEE
Q 013827 311 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA 390 (436)
Q Consensus 311 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 390 (436)
|..||. ++. ........+...+.++++.+++ .++++...++.|..||.. ++. ...........+.+++
T Consensus 211 i~~~~~-~g~--------~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~ 278 (300)
T 2qc5_A 211 IGRITT-TGE--------ISEYDIPTPNARPHAITAGKNS-EIWFTEWGANQIGRITND-NTI-QEYQLQTENAEPHGIT 278 (300)
T ss_dssp EEEECT-TCC--------EEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCE-EEEECCSTTCCCCCEE
T ss_pred EEEEcC-CCc--------EEEEECCCCCCCceEEEECCCC-CEEEeccCCCeEEEECCC-CcE-EEEECCccCCccceeE
Confidence 999998 331 1111222345668899999998 666666667899999983 442 2333333445688999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 391 FSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 391 ~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
+.++|. ++++ +.. .|..+|..
T Consensus 279 ~~~~g~-l~v~-~~~-~i~~~~p~ 299 (300)
T 2qc5_A 279 FGKDGS-VWFA-LKC-KIGKLNLN 299 (300)
T ss_dssp ECTTSC-EEEE-CSS-EEEEEEEC
T ss_pred eCCCCC-EEEE-ccC-ceEEeCCC
Confidence 999998 4554 434 67777653
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.57 E-value=1.6e-12 Score=117.13 Aligned_cols=294 Identities=12% Similarity=0.075 Sum_probs=181.4
Q ss_pred cceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEee-------
Q 013827 78 DMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS------- 150 (436)
Q Consensus 78 ~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~------- 150 (436)
.....|+++.+.++.....-..-.|++++.... .+. ........|- +.. +|||++|.++.
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~---~v~--~~I~vG~~P~-va~-------spDG~~lyVan~~~~r~~ 103 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG---RVI--GMIDGGFLPN-PVV-------ADDGSFIAHASTVFSRIA 103 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTT---EEE--EEEEECSSCE-EEE-------CTTSSCEEEEEEEEEETT
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCC---eEE--EEEECCCCCc-EEE-------CCCCCEEEEEcccccccc
Confidence 356689999988886631000138888888765 222 1222222232 433 99999988775
Q ss_pred ---CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC--CCcE
Q 013827 151 ---MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--DKQV 225 (436)
Q Consensus 151 ---~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--dg~v 225 (436)
.++.|.+||..+.+....+.+..+. ..........++|+|+|+ +++.+.. ++.|
T Consensus 104 ~G~~~~~VsviD~~t~~v~~~I~v~~g~--------------------r~~~g~~P~~~a~spDGk-~lyVan~~~~~~V 162 (386)
T 3sjl_D 104 RGERTDYVEVFDPVTLLPTADIELPDAP--------------------RFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAV 162 (386)
T ss_dssp EEEEEEEEEEECTTTCCEEEEEEETTCC--------------------CCCBSCCGGGEEECTTSS-EEEEEECSSSCEE
T ss_pred cCCCCCEEEEEECCCCeEEEEEECCCcc--------------------ccccCCCCceEEEcCCCC-EEEEEEcCCCCeE
Confidence 3678999999887665543221000 000122456789999986 5555543 6899
Q ss_pred EEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE-ee----eCCe-eEEEeC-CCC
Q 013827 226 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AV----AADV-ESLAWD-PHA 298 (436)
Q Consensus 226 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~----~~~i-~~~~~~-~~~ 298 (436)
.++|+.+++.+.++... + +....|.+...+++.+.||.+.+.++.......... .. ..++ ....|. ++|
T Consensus 163 sVID~~t~~vv~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG 238 (386)
T 3sjl_D 163 GVVDLEGKAFKRMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG 238 (386)
T ss_dssp EEEETTTTEEEEEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred EEEECCCCcEEEEEECC-C---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence 99999999999888532 1 122335554678888899999999987633221111 00 1111 123554 444
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEe----------ccCCCeEEEEecCCCCCEEEEEeC---------
Q 013827 299 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH----------AHDKAVCTISYNPLVPNLLATGST--------- 359 (436)
Q Consensus 299 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~p~~~~~l~~~~~--------- 359 (436)
.+++ .+.+|.|.+.|+..... .....+. ........++++|++ ..++....
T Consensus 239 -~~~~-vs~~g~V~v~d~~~~~~-------~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~-~~lyV~~~~~~~~~hk~ 308 (386)
T 3sjl_D 239 -RLVW-PTYTGKIHQIDLSSGDA-------KFLPAVEALTEAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRDEWRHKT 308 (386)
T ss_dssp -EEEE-EBTTSEEEEEECTTSSC-------EECCCEESSCHHHHHTTEEECSSSCEEEETTT-TEEEEEEEECCTTCTTS
T ss_pred -cEEE-EeCCCEEEEEECCCCcc-------eeecceeccccccccccccCCCcceeeECCCC-CeEEEEeccccccccCC
Confidence 3444 55689999999976521 1111111 012234457778988 55554432
Q ss_pred -CCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCC-cEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 360 -DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 360 -d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
.+.|.++|+.+.+........ ..++++++++|++ .++++...++.|.++|..+++.+.+.
T Consensus 309 ~~~~V~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i 370 (386)
T 3sjl_D 309 ASRFVVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV 370 (386)
T ss_dssp CEEEEEEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEe
Confidence 257999999999854443333 2688999999996 44554566899999999999987664
No 198
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.56 E-value=1.1e-12 Score=116.22 Aligned_cols=203 Identities=7% Similarity=0.027 Sum_probs=144.6
Q ss_pred CcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC
Q 013827 198 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 277 (436)
Q Consensus 198 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 277 (436)
.+.....+++|+|+|..+++++..++.|..||..++ ...+..+...+.++++++++ .++++...++.|.+||..+++
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~ 101 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGE 101 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCC
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCc
Confidence 455667899999997548888888999999999877 56666677889999999999 777776667899999997765
Q ss_pred CccceEe----eeCCeeEEEeCCCCCcEEEE----Ee-------------CCCcEEEEeCCCCCCCCCCCCCcccEEEec
Q 013827 278 HSGFKWA----VAADVESLAWDPHAEHSFVV----SL-------------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHA 336 (436)
Q Consensus 278 ~~~~~~~----~~~~i~~~~~~~~~~~~~~~----~~-------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 336 (436)
....... ....+..++++|+| .++++ |+ ..+.|..++.. + . ...+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g---------~-~~~~~~ 169 (296)
T 3e5z_A 102 WESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G---------T-LSAPIR 169 (296)
T ss_dssp EEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S---------C-EEEEEC
T ss_pred EEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-C---------C-EEEeec
Confidence 4332211 12346789999988 56665 22 13455555544 2 1 334455
Q ss_pred cCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC-CCCc-eeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 337 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS-NNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 337 ~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~-~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
+......++|+|++ ..+++.+.++.|.+|++. +++. .....+..+.+.+.+++++++|. ++++. ++.|.+||..
T Consensus 170 ~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 170 DRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPD 245 (296)
T ss_dssp CCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTT
T ss_pred CCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCC
Confidence 66678899999999 666777788999999997 4442 11222233455677899999998 56544 7889999986
Q ss_pred CCcccc
Q 013827 415 SDAGIS 420 (436)
Q Consensus 415 ~~~~~~ 420 (436)
++.+.
T Consensus 246 -g~~~~ 250 (296)
T 3e5z_A 246 -GDELG 250 (296)
T ss_dssp -SCEEE
T ss_pred -CCEEE
Confidence 55443
No 199
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.55 E-value=4.7e-12 Score=112.23 Aligned_cols=226 Identities=9% Similarity=0.066 Sum_probs=150.1
Q ss_pred CC-CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 140 RE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 140 s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
++ ++.++++...++.|..||..++.... + .....+.+++++++|. ++++
T Consensus 21 ~~~~~~l~~~d~~~~~i~~~d~~~~~~~~----------------------------~-~~~~~~~~i~~~~dG~-l~v~ 70 (297)
T 3g4e_A 21 EEVSNSLLFVDIPAKKVCRWDSFTKQVQR----------------------------V-TMDAPVSSVALRQSGG-YVAT 70 (297)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEE----------------------------E-ECSSCEEEEEEBTTSS-EEEE
T ss_pred ECCCCEEEEEECCCCEEEEEECCCCcEEE----------------------------E-eCCCceEEEEECCCCC-EEEE
Confidence 56 46667777788999999987543210 0 2345789999999975 5544
Q ss_pred EeCCCcEEEEeCCCCeEEEEEcc----cCCCeEEEEEcCCCCCEEEEEECC---------CcEEEEecCCCCCccceEee
Q 013827 219 ASADKQVKIWDVAAGKCNLTLEH----HTDKVQAVAWNHHSPQILLSGSFD---------RSVVMKDARISTHSGFKWAV 285 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~~~~~~~~~ 285 (436)
. ++.|.+||.++++....... ....+..++++|+| +++++.... ..-.+|.+............
T Consensus 71 -~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~ 147 (297)
T 3g4e_A 71 -I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ 147 (297)
T ss_dssp -E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE
T ss_pred -E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec
Confidence 3 56899999988765433321 12357889999999 666654322 23455555433333333444
Q ss_pred eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCC--CCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcE
Q 013827 286 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIR--TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 363 (436)
Q Consensus 286 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i 363 (436)
....+.++|+|++..++++.+.++.|..||+. ++... .......+..+...+..+++.++| ++.++....+.|
T Consensus 148 ~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~----~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v 222 (297)
T 3g4e_A 148 VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS----NRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRV 222 (297)
T ss_dssp ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE----EEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEE
T ss_pred cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc----CcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEE
Confidence 56678999999986677777888999999974 33100 001112223334567899999998 788887788899
Q ss_pred EEEECCCCCceeEEeeCCCCCcEEEEEEc-CCCCcEEEEEeCC
Q 013827 364 KLWDLSNNQPSCIASRNPKAGAVFSVAFS-EDSPFVLAIGGSK 405 (436)
Q Consensus 364 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~d 405 (436)
..||..+++. +..+..+...+++++|. |+++.++++...+
T Consensus 223 ~~~d~~tG~~--~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 223 IRLDPVTGKR--LQTVKLPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EEECTTTCCE--EEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred EEEcCCCceE--EEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 9999988774 33444445679999998 8888767766544
No 200
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.53 E-value=1.8e-11 Score=108.27 Aligned_cols=229 Identities=7% Similarity=0.006 Sum_probs=158.7
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
+++|+++++...++.|.+||.. +.. .... ...+...+.++++.++| .++++.
T Consensus 23 d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~-------------------------~~~~~~~~~~i~~~~~g-~l~v~~ 74 (299)
T 2z2n_A 23 SDKGKVWITQHKANMISCINLD-GKI-TEYP-------------------------LPTPDAKVMCLTISSDG-EVWFTE 74 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECTT-CCE-EEEE-------------------------CSSTTCCEEEEEECTTS-CEEEEE
T ss_pred CCCCCEEEEecCCCcEEEEcCC-CCe-EEec-------------------------CCcccCceeeEEECCCC-CEEEeC
Confidence 7889988777668899999976 221 1100 11234678999999997 477766
Q ss_pred eCCCcEEEEeCCCCeEE-EEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE-eeeCCeeEEEeCCC
Q 013827 220 SADKQVKIWDVAAGKCN-LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPH 297 (436)
Q Consensus 220 ~~dg~v~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~i~~~~~~~~ 297 (436)
..++.|..||.. ++.. ..+......+..+++.+++ .++++...++.|..||. ++....... .....+..++++++
T Consensus 75 ~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~ 151 (299)
T 2z2n_A 75 NAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSD 151 (299)
T ss_dssp TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred CCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCC
Confidence 667889999986 4322 2222345678999999988 77777777889999998 433222111 12346889999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEE
Q 013827 298 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 377 (436)
Q Consensus 298 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 377 (436)
+ .++++...++.|..||. ++. ............+..+++.+++ .++++...++.|.+||. +++. ...
T Consensus 152 g-~l~v~~~~~~~i~~~~~-~g~--------~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~-~~~ 218 (299)
T 2z2n_A 152 N-ALWFTENQNNAIGRITE-SGD--------ITEFKIPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITT-SGEI-TEF 218 (299)
T ss_dssp S-CEEEEETTTTEEEEECT-TCC--------EEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCE-EEE
T ss_pred C-CEEEEeCCCCEEEEEcC-CCc--------EEEeeCCCCCCcceeEEECCCC-CEEEEccCCceEEEECC-CCcE-EEE
Confidence 7 56776767789999998 441 1111123344568899999988 77776666889999999 6553 223
Q ss_pred eeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 013827 378 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 378 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 413 (436)
....+...+.+++++++|. ++++...++.|.+||.
T Consensus 219 ~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 219 KIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTS 253 (299)
T ss_dssp ECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEET
T ss_pred ECCCCCCCceeEEECCCCC-EEEeccCCceEEEECC
Confidence 3344456789999999998 6776657789999998
No 201
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.51 E-value=4.3e-12 Score=117.50 Aligned_cols=230 Identities=8% Similarity=0.016 Sum_probs=155.9
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
+++++++++...++.|++||.+++..... ... ..... ++|++++. .|+++
T Consensus 139 d~~g~lyv~d~~~~~I~~id~~~g~~~~~---------------------------~~~-~~~~~-ia~~~~g~-~l~~~ 188 (409)
T 3hrp_A 139 VGNNTVLAYQRDDPRVRLISVDDNKVTTV---------------------------HPG-FKGGK-PAVTKDKQ-RVYSI 188 (409)
T ss_dssp CSTTEEEEEETTTTEEEEEETTTTEEEEE---------------------------EET-CCBCB-CEECTTSS-EEEEE
T ss_pred eCCCCEEEEecCCCcEEEEECCCCEEEEe---------------------------ecc-CCCCc-eeEecCCC-cEEEE
Confidence 88999888888889999999875432211 111 12233 89999974 77777
Q ss_pred eCCC--cEEEEeCCCCeEEEEE----cccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccc----eEeeeCC-
Q 013827 220 SADK--QVKIWDVAAGKCNLTL----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF----KWAVAAD- 288 (436)
Q Consensus 220 ~~dg--~v~vwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~----~~~~~~~- 288 (436)
..++ .|.+++...+.....+ ......+.+++++|++.. |+.+..++.|+.||..+...... .......
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~ 267 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTN 267 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCS
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCEEEEecccccCCCCCC
Confidence 7765 7999988765544444 224566789999995524 44477788999999886653221 1111111
Q ss_pred ee-EEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEecc---------------CCCeEEEEecCCCCC
Q 013827 289 VE-SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH---------------DKAVCTISYNPLVPN 352 (436)
Q Consensus 289 i~-~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~p~~~~ 352 (436)
.. .++|+|++..++++...++.|+.|+.... ...+.++ -.....++++|++ .
T Consensus 268 P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-----------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~ 335 (409)
T 3hrp_A 268 PGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-----------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-N 335 (409)
T ss_dssp SCCEEEEETTTTEEEEEETTTTEEEEECTTCC-----------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-C
T ss_pred ccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-----------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-C
Confidence 23 99999976677888788899999987643 2222222 1347899999998 7
Q ss_pred EEEEEe-CCCcEEEEECCCCCceeEEeeCC------------CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 013827 353 LLATGS-TDKMVKLWDLSNNQPSCIASRNP------------KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 353 ~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 413 (436)
++++-. .++.|+.|++.++....+..... .-.....++++++|. ++++-..++.|+.+++
T Consensus 336 lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~-lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 336 FYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG-YWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE-EEEEESTTCEEEEEEE
T ss_pred EEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC-EEEEECCCCeEEEEEe
Confidence 777777 78999999987775332222100 123588999999986 6887778888988875
No 202
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.51 E-value=3.1e-12 Score=115.12 Aligned_cols=227 Identities=7% Similarity=-0.032 Sum_probs=154.6
Q ss_pred CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 013827 151 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 230 (436)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~ 230 (436)
.++.|.++|.++++........ ..-.........+.+..+ .++++...++.|.+||.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~---------------------~n~~~lg~~~~~i~~~~~--~lyv~~~~~~~v~viD~ 71 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYR---------------------ANGFKLGDVAQSMVIRDG--IGWIVVNNSHVIFAIDI 71 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHH---------------------HHSSCCBSCEEEEEEETT--EEEEEEGGGTEEEEEET
T ss_pred CCceEEEEECCCCEEhhhhHhh---------------------hcCcccCccceEEEEECC--EEEEEEcCCCEEEEEEC
Confidence 4789999999876543321000 000012244677777543 56777777899999999
Q ss_pred CCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeC------CeeEEEeCCCCCcEEEE
Q 013827 231 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA------DVESLAWDPHAEHSFVV 304 (436)
Q Consensus 231 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~------~i~~~~~~~~~~~~~~~ 304 (436)
.+++.+..+. .......+++++++ .++++...++.|.+||+.+.+.... ..... .+..+++ ++..++++
T Consensus 72 ~t~~~~~~i~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~-i~~g~~~~~~~~p~~i~~--~~~~lyv~ 146 (328)
T 3dsm_A 72 NTFKEVGRIT-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGY-IECPDMDMESGSTEQMVQ--YGKYVYVN 146 (328)
T ss_dssp TTCCEEEEEE-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEE-EECTTCCTTTCBCCCEEE--ETTEEEEE
T ss_pred cccEEEEEcC-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEE-EEcCCccccCCCcceEEE--ECCEEEEE
Confidence 9999988885 35678899999888 6666665899999999988765432 22233 5566777 34455555
Q ss_pred Ee-CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCC----------CcEEEEECCCCCc
Q 013827 305 SL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD----------KMVKLWDLSNNQP 373 (436)
Q Consensus 305 ~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----------~~i~iwd~~~~~~ 373 (436)
.. .++.|.++|+.+. +....+.. ......++++|++ ++++++..+ +.|.++|..+.+.
T Consensus 147 ~~~~~~~v~viD~~t~---------~~~~~i~~-g~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v 215 (328)
T 3dsm_A 147 CWSYQNRILKIDTETD---------KVVDELTI-GIQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTV 215 (328)
T ss_dssp ECTTCCEEEEEETTTT---------EEEEEEEC-SSCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE
T ss_pred cCCCCCEEEEEECCCC---------eEEEEEEc-CCCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeE
Confidence 54 4889999999887 33444443 2345788999998 666666554 7899999998874
Q ss_pred eeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccc
Q 013827 374 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 420 (436)
Q Consensus 374 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (436)
........ ......++|+|+++. |..+.. .|.+||..+++...
T Consensus 216 ~~~~~~~~-g~~p~~la~~~d~~~-lyv~~~--~v~~~d~~t~~~~~ 258 (328)
T 3dsm_A 216 EKQFKFKL-GDWPSEVQLNGTRDT-LYWINN--DIWRMPVEADRVPV 258 (328)
T ss_dssp EEEEECCT-TCCCEEEEECTTSCE-EEEESS--SEEEEETTCSSCCS
T ss_pred EEEEecCC-CCCceeEEEecCCCE-EEEEcc--EEEEEECCCCceee
Confidence 33333221 236889999999986 444443 89999998887643
No 203
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.48 E-value=5e-12 Score=110.50 Aligned_cols=189 Identities=15% Similarity=0.090 Sum_probs=140.0
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEcccC-CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEee-eCCeeE
Q 013827 214 NILASASADKQVKIWDVAAGKCNLTLEHHT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-AADVES 291 (436)
Q Consensus 214 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~i~~ 291 (436)
++|++++.|+.|.+||.++++.+..+..+. ..+.++.++|+| ++++ +.++.|..||. +++........ ...+.+
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 589999999999999999999999998765 478999999999 7777 45788999998 55544322222 246788
Q ss_pred EEeCCCCCcEEEEEeC-CCcEEEEeCCCCCCCCCCCCCcccEEEe------ccCCCeEEEEecCCCCCEEEEEeCCCcEE
Q 013827 292 LAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLH------AHDKAVCTISYNPLVPNLLATGSTDKMVK 364 (436)
Q Consensus 292 ~~~~~~~~~~~~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~p~~~~~l~~~~~d~~i~ 364 (436)
+.+.+++ +++++.+. ++.+..+|. ++ +.+..+. .+......+++.+++ +++++...++.|.
T Consensus 82 ~~~~~dG-~~lv~~~~~~~~v~~vd~-~G---------k~l~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~ 149 (276)
T 3no2_A 82 ARILPDG-NALVAWCGHPSTILEVNM-KG---------EVLSKTEFETGIERPHAQFRQINKNKKG-NYLVPLFATSEVR 149 (276)
T ss_dssp EEECTTS-CEEEEEESTTEEEEEECT-TS---------CEEEEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTTEEE
T ss_pred cEECCCC-CEEEEecCCCCEEEEEeC-CC---------CEEEEEeccCCCCcccccccCceECCCC-CEEEEecCCCEEE
Confidence 8999988 56776666 777777775 33 2233332 122234566788888 8999999999999
Q ss_pred EEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccc
Q 013827 365 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 423 (436)
Q Consensus 365 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (436)
.||.. ++. +..+... ..+.++...++|. +++++..++.|..+|..+++.+.+.-
T Consensus 150 ~~d~~-G~~--~w~~~~~-~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 150 EIAPN-GQL--LNSVKLS-GTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp EECTT-SCE--EEEEECS-SCCCEEEECTTSC-EEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred EECCC-CCE--EEEEECC-CCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 99998 763 4444433 3455678889998 57777778899999999898876643
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.47 E-value=1.4e-11 Score=123.48 Aligned_cols=250 Identities=12% Similarity=0.076 Sum_probs=156.9
Q ss_pred ccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcC-cceeecccCCCCCCCCCcEEEEeeC
Q 013827 73 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAF-PLCMAWLDCPLKDREKGNFMAVGSM 151 (436)
Q Consensus 73 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~ 151 (436)
...+..++|||||++||.+...++.....|++++...++. ...+ ++.. ...+.| +|| +.|+.++.
T Consensus 162 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~---~~~~---~~~~~~~~~~w-------spD-~~l~~~~~ 227 (741)
T 1yr2_A 162 ATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKP---LADE---LKWVKFSGLAW-------LGN-DALLYSRF 227 (741)
T ss_dssp -EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCE---EEEE---EEEEESCCCEE-------STT-SEEEEEEC
T ss_pred CEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC---CCcc---CCCceeccEEE-------ECC-CEEEEEEe
Confidence 3468889999999999998776543345899999887632 2111 1111 123444 999 99998887
Q ss_pred CCc--------------EEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEE
Q 013827 152 EPA--------------IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 217 (436)
Q Consensus 152 dg~--------------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 217 (436)
++. |++|++.++..... .......+...+..+.|+|+|+ +|+
T Consensus 228 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~-----------------------lv~~~~~~~~~~~~~~~SpDG~-~l~ 283 (741)
T 1yr2_A 228 AEPKEGQAFQALNYNQTVWLHRLGTPQSADQ-----------------------PVFATPELPKRGHGASVSSDGR-WVV 283 (741)
T ss_dssp CCC--------CCCCCEEEEEETTSCGGGCE-----------------------EEECCTTCTTCEEEEEECTTSC-EEE
T ss_pred cCcccccccccCCCCCEEEEEECCCCchhCE-----------------------EEeccCCCCeEEEEEEECCCCC-EEE
Confidence 654 88888865432111 1111223444688999999985 565
Q ss_pred EEeCC-----CcEEEEeCCCC--eEEEEEcccCCCeEEEEEcCCCCCEEEEEECC----CcEEEEecCCCC-CccceEe-
Q 013827 218 SASAD-----KQVKIWDVAAG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD----RSVVMKDARIST-HSGFKWA- 284 (436)
Q Consensus 218 s~~~d-----g~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~-~~~~~~~- 284 (436)
..+.+ ..|++||+.++ +....+..+...+.... +|++ ..|+..+.+ +.|.+||+.+.. .......
T Consensus 284 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~ 361 (741)
T 1yr2_A 284 ITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE 361 (741)
T ss_dssp EEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEET-TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC
T ss_pred EEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccC-CEEEEEECCCCCCCEEEEEeCCCCccccEEEecC
Confidence 55543 38999999877 31445544555555553 4788 556655543 459999987742 2222222
Q ss_pred eeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec-cCCCeEEEEecCCCCCEEEEEeC---C
Q 013827 285 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGST---D 360 (436)
Q Consensus 285 ~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~---d 360 (436)
....+..+.+. +..++++...++..++|.+... ......+.. ....+..+.++|++..++++.+. .
T Consensus 362 ~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~--------g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P 431 (741)
T 1yr2_A 362 SKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLD--------GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQP 431 (741)
T ss_dssp CSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETT--------SCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEE
T ss_pred CCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCC--------CCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCC
Confidence 23345667776 3468888889998877765421 022333433 35678889999988555555443 4
Q ss_pred CcEEEEECCCCC
Q 013827 361 KMVKLWDLSNNQ 372 (436)
Q Consensus 361 ~~i~iwd~~~~~ 372 (436)
++|++||+.+++
T Consensus 432 ~~i~~~d~~tg~ 443 (741)
T 1yr2_A 432 ATVLALDPATAK 443 (741)
T ss_dssp EEEEEEETTTTE
T ss_pred CEEEEEECCCCc
Confidence 789999998765
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.47 E-value=2.9e-11 Score=107.97 Aligned_cols=248 Identities=10% Similarity=0.113 Sum_probs=152.9
Q ss_pred cccccceeccCCceEEE-------EEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCC-CcE
Q 013827 74 EDLEDMTINPNDAVIVC-------ARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK-GNF 145 (436)
Q Consensus 74 ~~v~~~~~sp~~~~l~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~ 145 (436)
....+++|+|++.++++ ...++ .|+.|+...++...+...........+.++.+ +++ +++
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~-----~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~-------~~~~g~l 85 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAG-----EILRIDLKTGKKTVICKPEVNGYGGIPAGCQC-------DRDANQL 85 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECC-----EEEEECTTTCCEEEEECCEETTEECCEEEEEE-------CSSSSEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCC-----EEEEEeCCCCcEEEEEecccCCCCCCCceEEE-------ecCCCcE
Confidence 34678999999988887 44444 78888765542111111000001123445555 788 765
Q ss_pred EEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCC---
Q 013827 146 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD--- 222 (436)
Q Consensus 146 l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--- 222 (436)
+++.. .+.|.+||.+ ++.... . . ..........+.++++.++|. ++++...+
T Consensus 86 ~v~~~-~~~l~~~d~~-g~~~~~-~-~--------------------~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~ 140 (314)
T 1pjx_A 86 FVADM-RLGLLVVQTD-GTFEEI-A-K--------------------KDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVA 140 (314)
T ss_dssp EEEET-TTEEEEEETT-SCEEEC-C-S--------------------BCTTSCBCBCCCEEEECTTSC-EEEEECBCBCT
T ss_pred EEEEC-CCCEEEEeCC-CCEEEE-E-e--------------------ccCCCccccCCcCEEECCCCC-EEEEecCcccc
Confidence 55544 4478889976 332110 0 0 000011234688999999974 66666544
Q ss_pred ------------CcEEEEeCCCCeEEEEEcccCCCeEEEEEc----CCCCCEEEEEECCCcEEEEecCC-CCCcc--ceE
Q 013827 223 ------------KQVKIWDVAAGKCNLTLEHHTDKVQAVAWN----HHSPQILLSGSFDRSVVMKDARI-STHSG--FKW 283 (436)
Q Consensus 223 ------------g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~s~~~d~~i~~wd~~~-~~~~~--~~~ 283 (436)
+.|..+|.. ++..... .+......++|+ +++..++++...++.|.+||+.. +.... ...
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~ 218 (314)
T 1pjx_A 141 PADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG 218 (314)
T ss_dssp TSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE
T ss_pred cccccccccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEE
Confidence 567777765 5543333 234456889999 98833444555688999999862 22111 111
Q ss_pred eee----CCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCC-EEEEEe
Q 013827 284 AVA----ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN-LLATGS 358 (436)
Q Consensus 284 ~~~----~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~ 358 (436)
... ..+..+++++++ +++++...++.|..||..++ .....+..+...+.+++|+|++ . ++++..
T Consensus 219 ~~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g---------~~~~~~~~~~~~~~~i~~~~dg-~~l~v~~~ 287 (314)
T 1pjx_A 219 HIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGG---------QPKMRIRCPFEKPSNLHFKPQT-KTIFVTEH 287 (314)
T ss_dssp ECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCB---------SCSEEEECSSSCEEEEEECTTS-SEEEEEET
T ss_pred ECCCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCC---------cEeEEEeCCCCCceeEEECCCC-CEEEEEeC
Confidence 111 457889999987 67777777889999998755 3345555566789999999998 6 555555
Q ss_pred CCCcEEEEECCCC
Q 013827 359 TDKMVKLWDLSNN 371 (436)
Q Consensus 359 ~d~~i~iwd~~~~ 371 (436)
.++.|..|++...
T Consensus 288 ~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 288 ENNAVWKFEWQRN 300 (314)
T ss_dssp TTTEEEEEECSSC
T ss_pred CCCeEEEEeCCCC
Confidence 6788999998753
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.45 E-value=2.6e-11 Score=111.34 Aligned_cols=293 Identities=12% Similarity=0.066 Sum_probs=176.6
Q ss_pred ccCCceEEEEEecC-CcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEee----------
Q 013827 82 NPNDAVIVCARNED-DVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS---------- 150 (436)
Q Consensus 82 sp~~~~l~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~---------- 150 (436)
.|+++.+.++.... ... -.|.+++.... .+. ........| .+.+ +||+++|+++.
T Consensus 81 ~~~~~~vyV~n~~~~~~~-~~VsVID~~t~---~vv--~~I~vG~~P-gia~-------SpDgk~lyVan~~~~~~~~G~ 146 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAI-TQQFVIDGSTG---RIL--GMTDGGFLP-HPVA-------AEDGSFFAQASTVFERIARGK 146 (426)
T ss_dssp CCCTTEEEEEECTTTCSS-EEEEEEETTTT---EEE--EEEEECSSC-EEEE-------CTTSSCEEEEEEEEEETTEEE
T ss_pred CCCCCEEEEECCCcCCCC-CeEEEEECCCC---EEE--EEEECCCCC-ceEE-------CCCCCEEEEEeccccccccCC
Confidence 36777666665421 000 37888888765 222 222333334 4444 99999998876
Q ss_pred CCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC--CCcEEEE
Q 013827 151 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--DKQVKIW 228 (436)
Q Consensus 151 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--dg~v~vw 228 (436)
.++.|.++|..+.+....+.+.+. . .+ ........+.|+|+|+ +|+.+.. ++.|.+.
T Consensus 147 ~~~~VsviD~~t~~vv~~I~v~g~---------------~----r~-~~g~~P~~~~~spDGk-~lyV~n~~~~~~VsVI 205 (426)
T 3c75_H 147 RTDYVEVFDPVTFLPIADIELPDA---------------P----RF-LVGTYQWMNALTPDNK-NLLFYQFSPAPAVGVV 205 (426)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTC---------------C----CC-CBSCCGGGSEECTTSS-EEEEEECSSSCEEEEE
T ss_pred CCCEEEEEECCCCcEEEEEECCCc---------------c----cc-ccCCCcceEEEcCCCC-EEEEEecCCCCeEEEE
Confidence 367899999988766544322100 0 00 0112345789999985 6666653 5789999
Q ss_pred eCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccc---eEee-eCC-eeEEEeCCCCCcEEE
Q 013827 229 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF---KWAV-AAD-VESLAWDPHAEHSFV 303 (436)
Q Consensus 229 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~---~~~~-~~~-i~~~~~~~~~~~~~~ 303 (436)
|+.+++.+..+.... +....|++...+++.+.||.+.+.+..+.+.... .... ..+ ...+.+.+++..+++
T Consensus 206 D~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~ 281 (426)
T 3c75_H 206 DLEGKTFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW 281 (426)
T ss_dssp ETTTTEEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE
T ss_pred ECCCCeEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE
Confidence 999999988886321 1334555556777788888888888844433210 0000 011 123466887754444
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCcccEEEe--------ccCCCeEEEEecCCCCCEEEEEe---------CCCcEEEE
Q 013827 304 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--------AHDKAVCTISYNPLVPNLLATGS---------TDKMVKLW 366 (436)
Q Consensus 304 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~p~~~~~l~~~~---------~d~~i~iw 366 (436)
....+.+.+.|......... . ...+. ........++++|++.+++++.. .++.|.++
T Consensus 282 -~s~~g~V~ViD~~~~~~~v~----~-~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVI 355 (426)
T 3c75_H 282 -PTYTGKIFQADLTAEGATFR----A-PIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVL 355 (426)
T ss_dssp -EBTTSEEEEEEECSSCEEEC----C-CEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred -EeCCCcEEEEeccCCceEEe----e-eeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEE
Confidence 45678999999865421000 0 00000 00112223689999844444432 13579999
Q ss_pred ECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEe-CCCcEEEEeCCCCcccccc
Q 013827 367 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 367 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~ 422 (436)
|..+.+......... ...++.|+|||+.++++.. .++.|.++|+.+++.+.+.
T Consensus 356 D~~T~kvv~~I~vg~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 356 NAETGERINKIELGH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ETTTCCEEEEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ECCCCeEEEEEECCC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 999988543333322 4789999999983355555 6999999999999998774
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.44 E-value=2.6e-10 Score=100.92 Aligned_cols=230 Identities=9% Similarity=-0.001 Sum_probs=157.9
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
+++|+++++...++.|.+|+.. ++.. .. .+..+...+.++++.++| .++++.
T Consensus 28 d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~-------------------------~~~~~~~~~~~i~~~~~g-~l~v~~ 79 (300)
T 2qc5_A 28 SEDGKVWFTQHKANKISSLDQS-GRIK-EF-------------------------EVPTPDAKVMCLIVSSLG-DIWFTE 79 (300)
T ss_dssp CTTSCEEEEETTTTEEEEECTT-SCEE-EE-------------------------ECSSTTCCEEEEEECTTS-CEEEEE
T ss_pred CCCCCEEEEcCCCCeEEEECCC-CceE-EE-------------------------ECCCCCCcceeEEECCCC-CEEEEe
Confidence 7889988877778999999976 2211 10 011234578899999987 466666
Q ss_pred eCCCcEEEEeCCCCeEEE-EEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEe-eeCCeeEEEeCCC
Q 013827 220 SADKQVKIWDVAAGKCNL-TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-VAADVESLAWDPH 297 (436)
Q Consensus 220 ~~dg~v~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~i~~~~~~~~ 297 (436)
..++.|..+|.. ++... .+......+.++++.+++ .++++...++.|..+|.. ......... ....+..++++++
T Consensus 80 ~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~ 156 (300)
T 2qc5_A 80 NGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSD 156 (300)
T ss_dssp TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT
T ss_pred cCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCC
Confidence 667889999987 55432 222234678999999988 777777668899999886 332211111 2356889999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEE
Q 013827 298 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 377 (436)
Q Consensus 298 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 377 (436)
+ +++++...++.|..||. .+. ........+...+..+++.+++ .++++....+.|.+|+. +++. ...
T Consensus 157 g-~l~v~~~~~~~i~~~~~-~g~--------~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~-~~~ 223 (300)
T 2qc5_A 157 N-ALWFTENQNNSIGRITN-TGK--------LEEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITT-TGEI-SEY 223 (300)
T ss_dssp S-SEEEEETTTTEEEEECT-TCC--------EEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCE-EEE
T ss_pred C-CEEEEecCCCeEEEECC-CCc--------EEEeeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcC-CCcE-EEE
Confidence 7 46666666888999998 331 1111222334568899999988 77777666778999998 4442 222
Q ss_pred eeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 378 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 378 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
........+.+++++++|. ++++...++.|..||..
T Consensus 224 ~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 224 DIPTPNARPHAITAGKNSE-IWFTEWGANQIGRITND 259 (300)
T ss_dssp ECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT
T ss_pred ECCCCCCCceEEEECCCCC-EEEeccCCCeEEEECCC
Confidence 2334455789999999998 67766667899999983
No 208
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.44 E-value=1.9e-10 Score=103.33 Aligned_cols=223 Identities=12% Similarity=0.062 Sum_probs=141.8
Q ss_pred CCC-CcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 140 REK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 140 s~~-~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
+|+ +.++++...++.|..||..+++... + .....+.+++|+++|. ++++
T Consensus 57 ~~~~~~l~~~d~~~~~i~~~d~~~~~~~~----------------------------~-~~~~~v~~i~~~~dg~-l~v~ 106 (326)
T 2ghs_A 57 DPASGTAWWFNILERELHELHLASGRKTV----------------------------H-ALPFMGSALAKISDSK-QLIA 106 (326)
T ss_dssp ETTTTEEEEEEGGGTEEEEEETTTTEEEE----------------------------E-ECSSCEEEEEEEETTE-EEEE
T ss_pred eCCCCEEEEEECCCCEEEEEECCCCcEEE----------------------------E-ECCCcceEEEEeCCCe-EEEE
Confidence 675 5566777778999999987532110 0 1235789999999963 5554
Q ss_pred EeCCCcEEEEeCCCCeEEEEEcc----cCCCeEEEEEcCCCCCEEEEEEC------CCcEEEEecCCCCCccceEeeeCC
Q 013827 219 ASADKQVKIWDVAAGKCNLTLEH----HTDKVQAVAWNHHSPQILLSGSF------DRSVVMKDARISTHSGFKWAVAAD 288 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~~~ 288 (436)
+.+ .|.+||..+++....... ....+..+.++|+| +++++... .+.|..++ +++ ..........
T Consensus 107 -~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~-~~~~~~~~~~ 180 (326)
T 2ghs_A 107 -SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGK-VTKLFADISI 180 (326)
T ss_dssp -ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTE-EEEEEEEESS
T ss_pred -ECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCc-EEEeeCCCcc
Confidence 444 499999988775433221 12358899999999 66655432 24455555 322 2222333456
Q ss_pred eeEEEeCCCCCcEEEEEeCCCcEEEEeCC--CC-CCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 013827 289 VESLAWDPHAEHSFVVSLEDGTIKGFDIR--TA-KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL 365 (436)
Q Consensus 289 i~~~~~~~~~~~~~~~~~~dg~i~i~d~~--~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~i 365 (436)
...++|+|++..++++...++.|.+||+. ++ .... ......+......+..+++.+++ .+.++...++.|.+
T Consensus 181 ~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~----~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~ 255 (326)
T 2ghs_A 181 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK----AEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDR 255 (326)
T ss_dssp EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC----CEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEE
T ss_pred cCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC----ceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEE
Confidence 78999999986566666778899999986 32 1100 01111222234557789999998 77777667788999
Q ss_pred EECCCCCceeEEeeCCCCCcEEEEEEc-CCCCcEEEEEeCCC
Q 013827 366 WDLSNNQPSCIASRNPKAGAVFSVAFS-EDSPFVLAIGGSKG 406 (436)
Q Consensus 366 wd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~dg 406 (436)
||. +++. +..+..+...+.+++|+ +++..++++...++
T Consensus 256 ~d~-~g~~--~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 256 YDT-DGNH--IARYEVPGKQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp ECT-TCCE--EEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred ECC-CCCE--EEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence 998 4442 33344445579999998 88876666555543
No 209
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.44 E-value=6.6e-11 Score=117.55 Aligned_cols=252 Identities=12% Similarity=0.103 Sum_probs=160.3
Q ss_pred CccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcC-cceeecccCCCCCCCCCcEEEEee
Q 013827 72 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAF-PLCMAWLDCPLKDREKGNFMAVGS 150 (436)
Q Consensus 72 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~ 150 (436)
+...+..++|||||++||.+...++.....|++++..+++ ....+ ++.. ...+.| + |++.|+.++
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~---~~~~~---~~~~k~~~~~W-------s-Dg~~l~y~~ 192 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ---PLETP---LKDVKFSGISW-------L-GNEGFFYSS 192 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS---EEEEE---EEEEESCCCEE-------E-TTTEEEEEE
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC---CCccc---cCCceeccEEE-------e-CCCEEEEEE
Confidence 4456888999999999998776554334688999888763 22111 1111 123344 9 999999988
Q ss_pred CCCc-------------EEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccC-cccceeEEEecCCCCcEE
Q 013827 151 MEPA-------------IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS-HTDSVLGLAWNKEFRNIL 216 (436)
Q Consensus 151 ~dg~-------------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l 216 (436)
.+.. |++|++.+...... .+..... |...+..+.|+|+|+.++
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~-----------------------~v~~~~~~~~~~~~~~~~SpDg~~l~ 249 (693)
T 3iuj_A 193 YDKPDGSELSARTDQHKVYFHRLGTAQEDDR-----------------------LVFGAIPAQHHRYVGATVTEDDRFLL 249 (693)
T ss_dssp SSCCC-------CCCCEEEEEETTSCGGGCE-----------------------EEESCSGGGCCSEEEEEECTTSCEEE
T ss_pred ecCcccccccccCCCcEEEEEECCCCcccce-----------------------EEEecCCCCCeEEEEEEEcCCCCEEE
Confidence 7743 89999875432211 1111223 445578899999987555
Q ss_pred EEEeCC---CcEEEEeCCCCe-EEEEEcccCCCeEEEEEcCCCCCEEEEEECC---CcEEEEecCCCCCc--cceEeeeC
Q 013827 217 ASASAD---KQVKIWDVAAGK-CNLTLEHHTDKVQAVAWNHHSPQILLSGSFD---RSVVMKDARISTHS--GFKWAVAA 287 (436)
Q Consensus 217 ~s~~~d---g~v~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~--~~~~~~~~ 287 (436)
++.+.+ ..|+++|+.++. ....+..+....... |++++..+++....+ +.|..+|+.+.... ..+..+..
T Consensus 250 ~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 328 (693)
T 3iuj_A 250 ISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ 328 (693)
T ss_dssp EEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred EEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC
Confidence 555433 589999997763 345555555555554 666664666666554 57999999876541 22344444
Q ss_pred CeeEEEeCCCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCcccEEEe-ccCCCeEEEEecCCCCCEEEEEeC---CC
Q 013827 288 DVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCTISYNPLVPNLLATGST---DK 361 (436)
Q Consensus 288 ~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~---d~ 361 (436)
.+. .|++++..++++...++ .|++||+... . ...+. .....+..+.++|++..++++.+. -+
T Consensus 329 ~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~---------~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~ 396 (693)
T 3iuj_A 329 QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK---------R-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPP 396 (693)
T ss_dssp SCE--EEEEETTEEEEEEEETTEEEEEEECTTSC---------E-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCC
T ss_pred CEE--EEEEECCEEEEEEEECCeeEEEEEECCCC---------e-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCC
Confidence 444 78888766666666666 5888888743 1 22332 234567778888888555555543 27
Q ss_pred cEEEEECCCCCc
Q 013827 362 MVKLWDLSNNQP 373 (436)
Q Consensus 362 ~i~iwd~~~~~~ 373 (436)
.++.||+.+++.
T Consensus 397 ~l~~~d~~~g~~ 408 (693)
T 3iuj_A 397 TLYRFEPKSGAI 408 (693)
T ss_dssp EEEEECTTTCCE
T ss_pred EEEEEECCCCeE
Confidence 899999987764
No 210
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.43 E-value=5.4e-12 Score=114.26 Aligned_cols=172 Identities=16% Similarity=0.122 Sum_probs=129.3
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCe-----------EEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 013827 202 SVLGLAWNKEFRNILASASADKQVKIWDVAAGK-----------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM 270 (436)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~ 270 (436)
.++.+++++.. .++++|+.++ +++|++++.+ ..... .+.. |+.++| ++ ..|+++ .++.|++
T Consensus 39 ~~nlLais~~~-gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~-~~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HG-DQVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ET-TEEEEE-ESSEEEE
T ss_pred cccEEEEcCCC-CEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CC-CEEEEE-cCCcEEE
Confidence 68999999996 5899999875 6669865432 11223 3556 999999 66 788888 8899999
Q ss_pred EecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC
Q 013827 271 KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 350 (436)
Q Consensus 271 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 350 (436)
||+++.........+...+.++.+.+. .+++++.||.|.+||+... ... .+...|++++|+|+|
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~---------~~~----~~~~~Vs~v~WSpkG 174 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTK---------STK----QLAQNVTSFDVTNSQ 174 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTC---------CEE----EEEESEEEEEECSSE
T ss_pred EEchhhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCC---------ccc----cccCCceEEEEcCCc
Confidence 999887755555566777888877763 2888899999999999976 222 145689999999987
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceeEEee------C---CCCCcEEEEEEcCCCCcEEEE
Q 013827 351 PNLLATGSTDKMVKLWDLSNNQPSCIASR------N---PKAGAVFSVAFSEDSPFVLAI 401 (436)
Q Consensus 351 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~---~~~~~v~~~~~~~~~~~~l~s 401 (436)
++.|..||++++|+....+......+ . +|...|.++.|.+++.+ +++
T Consensus 175 ---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~f-lv~ 230 (388)
T 1xip_A 175 ---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDF-LAV 230 (388)
T ss_dssp ---EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEE-EEE
T ss_pred ---eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeE-EEE
Confidence 67899999999998877652112223 2 36778999999999986 444
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.42 E-value=2e-11 Score=121.26 Aligned_cols=235 Identities=15% Similarity=0.108 Sum_probs=149.2
Q ss_pred CCCCCcEEEEe-----eCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccc--eeEEEecCC
Q 013827 139 DREKGNFMAVG-----SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS--VLGLAWNKE 211 (436)
Q Consensus 139 ~s~~~~~l~~g-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~ 211 (436)
|||||++||.+ +....|++||+.+++.+.. +... ...++|+ |
T Consensus 136 ~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~------------------------------~~~~~k~~~~~Ws-D 184 (693)
T 3iuj_A 136 FSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET------------------------------PLKDVKFSGISWL-G 184 (693)
T ss_dssp ECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE------------------------------EEEEEESCCCEEE-T
T ss_pred ECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc------------------------------ccCCceeccEEEe-C
Confidence 49999999953 3336799999998664321 1122 3578899 8
Q ss_pred CCcEEEEEeCCC-------------cEEEEeCCCCeE--EEEE--cc-cCCCeEEEEEcCCCCCEEEEEEC---CCcEEE
Q 013827 212 FRNILASASADK-------------QVKIWDVAAGKC--NLTL--EH-HTDKVQAVAWNHHSPQILLSGSF---DRSVVM 270 (436)
Q Consensus 212 ~~~~l~s~~~dg-------------~v~vwd~~~~~~--~~~~--~~-~~~~v~~~~~~~~~~~~l~s~~~---d~~i~~ 270 (436)
|. .|+.++.+. .|++|++.++.. ...+ .. |...+.++.|+|+|..++++.+. .+.|.+
T Consensus 185 g~-~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~ 263 (693)
T 3iuj_A 185 NE-GFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYV 263 (693)
T ss_dssp TT-EEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEE
T ss_pred CC-EEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEE
Confidence 75 666666663 399999987642 2233 33 45567889999999444444443 258999
Q ss_pred EecCCCCC-ccceEeeeCCeeEEEeCCCCCcEEEEEeCC---CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEe
Q 013827 271 KDARISTH-SGFKWAVAADVESLAWDPHAEHSFVVSLED---GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 346 (436)
Q Consensus 271 wd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 346 (436)
+|+.++.. ...+.......... +++++..+++....+ +.|..+|+.+.. ......+..|...+. .|
T Consensus 264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~-------~~~~~~l~~~~~~~~--~~ 333 (693)
T 3iuj_A 264 KDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG-------PAHWRDLIPERQQVL--TV 333 (693)
T ss_dssp EETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC-------GGGCEEEECCCSSCE--EE
T ss_pred EECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC-------ccccEEEecCCCCEE--EE
Confidence 99987642 22233333444443 666676677766554 678999988752 112345666666655 88
Q ss_pred cCCCCCEEEEEeCCC--cEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCC---CcEEEEeCCCCc
Q 013827 347 NPLVPNLLATGSTDK--MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK---GKLEIWDTLSDA 417 (436)
Q Consensus 347 ~p~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~ 417 (436)
++++..++++...++ .|++|++..... ....+ ...+.+..+.+++++..++++.+.. +.|..||+.+++
T Consensus 334 s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~-p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 334 HSGSGYLFAEYMVDATARVEQFDYEGKRV-REVAL-PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEETTEEEEEEEETTEEEEEEECTTSCEE-EEECC-SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEECCEEEEEEEECCeeEEEEEECCCCee-EEeec-CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 898843444444454 688999885532 22222 2345677888899988655544432 789999998765
No 212
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.41 E-value=8.6e-10 Score=100.61 Aligned_cols=240 Identities=10% Similarity=0.027 Sum_probs=148.9
Q ss_pred cceeccCCceEEEEEecCC-----cceeEEEEEecCCCCCCceeeecccccC--------cCcceeecccCCCCCCCCCc
Q 013827 78 DMTINPNDAVIVCARNEDD-----VSHLEVYILEESDGGDPNLYVHHHIIIP--------AFPLCMAWLDCPLKDREKGN 144 (436)
Q Consensus 78 ~~~~sp~~~~l~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~s~~~~ 144 (436)
.++|||||+.+.++..... ...-.|.+++.... .... ...++ ..|..+. ++|||+
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~---~~~~--~i~~~~~~~~~~g~~p~~~~-------~spDG~ 137 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF---LPIA--DIELPDAPRFDVGPYSWMNA-------NTPNNA 137 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC---cEEE--EEECCCccccccCCCccceE-------ECCCCC
Confidence 8999999999998863100 00015777777543 1111 11111 1222333 499999
Q ss_pred EEEEeeC--CCcEEEEeCCCCCCCcc-eeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC
Q 013827 145 FMAVGSM--EPAIEIWDLDVIDEVQP-HVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 221 (436)
Q Consensus 145 ~l~~g~~--dg~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 221 (436)
+|+++.. ++.|.++| .+++.... . .... ++.+.|++...+++.+.
T Consensus 138 ~l~v~n~~~~~~v~viD-~t~~~~~~~i----------------------------~~~~---~~~~~~~~~~~~~~~~~ 185 (373)
T 2mad_H 138 DLLFFQFAAGPAVGLVV-QGGSSDDQLL----------------------------SSPT---CYHIHPGAPSTFYLLCA 185 (373)
T ss_pred EEEEEecCCCCeEEEEE-CCCCEEeEEc----------------------------CCCc---eEEEEeCCCceEEEEcC
Confidence 9999874 47899999 87654332 1 1111 24556766667778888
Q ss_pred CCcEEEEeCCCCeEEEEEc-----ccCCCe-EEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc-ceEe----------
Q 013827 222 DKQVKIWDVAAGKCNLTLE-----HHTDKV-QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWA---------- 284 (436)
Q Consensus 222 dg~v~vwd~~~~~~~~~~~-----~~~~~v-~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~---------- 284 (436)
||.+.++|. +++...... ....++ ....+.+++..++++ +..+.+.+.|+....... ....
T Consensus 186 dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~ 263 (373)
T 2mad_H 186 QGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADT 263 (373)
T ss_pred CCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccc
Confidence 999999999 777653321 112222 234566666344444 478899999987543211 0111
Q ss_pred -eeCCeeEEEeCCCCCcEEEEEe---------CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEE
Q 013827 285 -VAADVESLAWDPHAEHSFVVSL---------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 354 (436)
Q Consensus 285 -~~~~i~~~~~~~~~~~~~~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 354 (436)
.......+.++|++..++++.. .++.|.++|+.+. +.+..+.. ......++|+|++..++
T Consensus 264 ~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---------~vv~~i~~-g~~p~~i~~s~Dg~~~l 333 (373)
T 2mad_H 264 WRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---------QTSSQISL-GHDVDAISVAQDGGPDL 333 (373)
T ss_pred eecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC---------EEEEEEEC-CCCcCeEEECCCCCeEE
Confidence 1233445788998865555443 2457999999887 44555543 33578999999993277
Q ss_pred EEEe-CCCcEEEEECCCCCc
Q 013827 355 ATGS-TDKMVKLWDLSNNQP 373 (436)
Q Consensus 355 ~~~~-~d~~i~iwd~~~~~~ 373 (436)
+++. .++.|.++|+.+.+.
T Consensus 334 ~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 334 YALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred EEEcCCCCeEEEEECCCCCE
Confidence 7776 589999999999884
No 213
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.38 E-value=1.3e-11 Score=111.69 Aligned_cols=177 Identities=12% Similarity=0.124 Sum_probs=125.9
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
++...+|++|+.+ .+.+|+++....... ......... ....+.. |+.++| ++ .+|+++
T Consensus 46 s~~~gll~a~~~~-~l~v~~~~~l~~~~~----------------~~~~~~~~~-~~~~lp~-V~~l~f--d~-~~L~v~ 103 (388)
T 1xip_A 46 SNSKSLFVAASGS-KAVVGELQLLRDHIT----------------SDSTPLTFK-WEKEIPD-VIFVCF--HG-DQVLVS 103 (388)
T ss_dssp ETTTTEEEEEETT-EEEEEEHHHHHHHHH----------------SSSCCCCCS-EEEECTT-EEEEEE--ET-TEEEEE
T ss_pred cCCCCEEEEeCCC-EEEEEEhhHhhhhhc----------------cccccccce-EEeeCCC-eeEEEE--CC-CEEEEE
Confidence 7889999999987 455698764321000 000001111 1223556 999999 65 588888
Q ss_pred eCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCC
Q 013827 220 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 299 (436)
Q Consensus 220 ~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 299 (436)
.++.|++||+.+.........|...+.++.+.+. .+++++.||.|.+||+.+.... .+...|++++|+|.|
T Consensus 104 -~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~----~~~~~Vs~v~WSpkG- 174 (388)
T 1xip_A 104 -TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTK----QLAQNVTSFDVTNSQ- 174 (388)
T ss_dssp -ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEE----EEEESEEEEEECSSE-
T ss_pred -cCCcEEEEEchhhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCccc----cccCCceEEEEcCCc-
Confidence 8899999999877666666677888988887754 3888999999999999876643 256689999999987
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE------e---ccCCCeEEEEecCCCCCEEEEE
Q 013827 300 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL------H---AHDKAVCTISYNPLVPNLLATG 357 (436)
Q Consensus 300 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------~---~~~~~v~~~~~~p~~~~~l~~~ 357 (436)
++.|..||.+++|+...... .....+ . +|...|.++.|.+++ .++++-
T Consensus 175 --~~vg~~dg~i~~~~~~~~~~-------~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~y 231 (388)
T 1xip_A 175 --LAVLLKDRSFQSFAWRNGEM-------EKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAVF 231 (388)
T ss_dssp --EEEEETTSCEEEEEEETTEE-------EEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEEE
T ss_pred --eEEEEcCCcEEEEcCCCccc-------cccceecCCcccccccCCCeeEEEEEEecCC-eEEEEE
Confidence 67899999999998876510 002233 2 377889999999987 677663
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.38 E-value=3e-10 Score=105.10 Aligned_cols=239 Identities=11% Similarity=0.039 Sum_probs=153.5
Q ss_pred cccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCC
Q 013827 74 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP 153 (436)
Q Consensus 74 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 153 (436)
.....|+|+|+++++++....+ .|+.++.... .+...... ...+. ++| +++++.|+++..++
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~-----~I~~id~~~g---~~~~~~~~--~~~~~-ia~-------~~~g~~l~~~d~~~ 192 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDP-----RVRLISVDDN---KVTTVHPG--FKGGK-PAV-------TKDKQRVYSIGWEG 192 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTT-----EEEEEETTTT---EEEEEEET--CCBCB-CEE-------CTTSSEEEEEBSST
T ss_pred CCceEEEEeCCCCEEEEecCCC-----cEEEEECCCC---EEEEeecc--CCCCc-eeE-------ecCCCcEEEEecCC
Confidence 3577899999999777765444 7888887654 22111111 11112 444 89999998888766
Q ss_pred --cEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCC
Q 013827 154 --AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 231 (436)
Q Consensus 154 --~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~ 231 (436)
.|.+|+........... .........+.+++++|++. .|+.+..++.|+.||..
T Consensus 193 ~~~I~~~d~~~~~~~~~~g-----------------------~~~~~~~~~p~~iav~p~~g-~lyv~d~~~~I~~~d~~ 248 (409)
T 3hrp_A 193 THTVYVYMKASGWAPTRIG-----------------------QLGSTFSGKIGAVALDETEE-WLYFVDSNKNFGRFNVK 248 (409)
T ss_dssp TCEEEEEEGGGTTCEEEEE-----------------------ECCTTSCSCCCBCEECTTSS-EEEEECTTCEEEEEETT
T ss_pred CceEEEEEcCCCceeEEee-----------------------eccchhcCCcEEEEEeCCCC-eEEEEECCCcEEEEECC
Confidence 68888765332211100 00011345678899999534 45557778899999998
Q ss_pred CCeEEEE----EcccCCCe-E-EEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEee---------------eCCee
Q 013827 232 AGKCNLT----LEHHTDKV-Q-AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---------------AADVE 290 (436)
Q Consensus 232 ~~~~~~~----~~~~~~~v-~-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---------------~~~i~ 290 (436)
++..... ..++...- . .++|+|++..++++-..++.|+.|+.... ....... -....
T Consensus 249 ~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~ 326 (409)
T 3hrp_A 249 TQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPN 326 (409)
T ss_dssp TCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEE
T ss_pred CCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCe
Confidence 7754322 22222222 3 89999965377777777889999987643 1112221 13478
Q ss_pred EEEeCCCCCcEEEEEe-CCCcEEEEeCCCCCCCCCCCCCcccEEEecc---------------CCCeEEEEecCCCCCEE
Q 013827 291 SLAWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH---------------DKAVCTISYNPLVPNLL 354 (436)
Q Consensus 291 ~~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~p~~~~~l 354 (436)
.++++|++ +++++-. .++.|+.|++..+. +..+.++ -.....++++|++ .++
T Consensus 327 gia~d~dG-~lyvad~~~~~~I~~~~~~~G~----------v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-~ly 394 (409)
T 3hrp_A 327 GMTVDEDG-NFYIVDGFKGYCLRKLDILDGY----------VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEG-GYW 394 (409)
T ss_dssp EEEECTTC-CEEEEETTTTCEEEEEETTTTE----------EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS-EEE
T ss_pred EEEEeCCC-CEEEEeCCCCCEEEEEECCCCE----------EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC-CEE
Confidence 99999987 4777777 88999999976551 2333333 2457899999997 788
Q ss_pred EEEeCCCcEEEEEC
Q 013827 355 ATGSTDKMVKLWDL 368 (436)
Q Consensus 355 ~~~~~d~~i~iwd~ 368 (436)
++-..++.|+.+++
T Consensus 395 Vad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 395 IAEAWGKAIRKYAV 408 (409)
T ss_dssp EEESTTCEEEEEEE
T ss_pred EEECCCCeEEEEEe
Confidence 88778888887765
No 215
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.36 E-value=2.6e-11 Score=109.82 Aligned_cols=282 Identities=12% Similarity=0.048 Sum_probs=164.7
Q ss_pred cccccceeccCCceEEEEEec-CCcceeEEEEEecCCCCCCceeee-----cccccCcCcceeecccCCCCCCCCCcEEE
Q 013827 74 EDLEDMTINPNDAVIVCARNE-DDVSHLEVYILEESDGGDPNLYVH-----HHIIIPAFPLCMAWLDCPLKDREKGNFMA 147 (436)
Q Consensus 74 ~~v~~~~~sp~~~~l~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 147 (436)
..+..++++|+|+++++.... ++. .+|+.++ .+ .+... .....-..+..+++ ++++++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~--~~l~~~~--~g---~~~~~p~~~~~~~~~~~~p~gv~~-------d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPE--MQVAELT--QD---GLIPFPPQSGNAIITFDTVLGIKS-------DGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCS--CSEEEEE--TT---EEEESCCCCSSCCCCCSCEEEEEE-------CSSSEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCc--eEEEEEC--CC---CeecCCCcccCcccceeEeeEEEE-------cCCCcEEE
Confidence 457889999999998886422 211 3566655 22 11100 00000112334444 88888777
Q ss_pred EeeC-----CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEe--
Q 013827 148 VGSM-----EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-- 220 (436)
Q Consensus 148 ~g~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-- 220 (436)
+-.. ++.|.+||+.+++........ .....+...+..+++.+++...+++-.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~---------------------~~~~~~~~~~~~v~vd~~~g~~yvtd~~~ 141 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVIYLP---------------------PPITLSNSFVNDLAVDLIHNFVYISDPAP 141 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEEECC---------------------TTTSCTTCCCCEEEEETTTTEEEEEECCS
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEEECC---------------------hhhcccccccceEEEecCCCEEEEEcCcc
Confidence 6544 578999999876543321110 001123456789999986544556655
Q ss_pred -CCCcEEEEeCCCCeEEEEEcccCCCeE-EEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCC
Q 013827 221 -ADKQVKIWDVAAGKCNLTLEHHTDKVQ-AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA 298 (436)
Q Consensus 221 -~dg~v~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~ 298 (436)
.++.|.+||+.+++..+.+.+|..... ...+.+++ ..+.+.+.++.+..|. ..+..++|+|++
T Consensus 142 ~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g-~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg 206 (343)
T 2qe8_A 142 DDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDG-VPVQIGQPDGTVIRPH--------------LGVNGIVLDAEN 206 (343)
T ss_dssp GGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETT-EECBEECTTSCEECCC--------------CCEEEEEECTTS
T ss_pred CCCCeEEEEECCCCCEEEEecCCCcccccccceeECC-EEEEeccCCCceecee--------------cccceeEeccCC
Confidence 678999999998887776665432110 13344455 5666677777776553 236789999988
Q ss_pred CcEEEEEeCC-CcEEEEeCCCCCCCCCCCCCc--ccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCcee
Q 013827 299 EHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQ--SSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 375 (436)
Q Consensus 299 ~~~~~~~~~d-g~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~ 375 (436)
. .++++..+ ..+..++......... .... ......++......+++++++ .++++...++.|.+||..+++...
T Consensus 207 ~-~ly~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~~~ 283 (343)
T 2qe8_A 207 E-WLYLSPMHSTSMYRIKSADLSNLQL-TDAELGSKIERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRAYKL 283 (343)
T ss_dssp C-EEEEEESSCSEEEEEEHHHHTCTTC-CHHHHHTTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEEEE
T ss_pred C-EEEEEeCCCCeEEEEEHHHhcCCCC-ChhhhhcceEecccCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCCEEE
Confidence 5 45555444 4555555321100000 0000 011222344566789999998 888888889999999985555323
Q ss_pred EEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEE
Q 013827 376 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI 410 (436)
Q Consensus 376 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 410 (436)
+.. ..+...+.+++|.+++. ++++.+..+.+.+
T Consensus 284 ~~~-~~~~~~p~~va~~~~g~-l~v~~~~~~~~~~ 316 (343)
T 2qe8_A 284 LVT-DEKLSWTDSFNFGSDGY-LYFDCNQLHHSAP 316 (343)
T ss_dssp EEE-CGGGSCEEEEEECTTSC-EEEEECCGGGSGG
T ss_pred EEE-CCceecCCeeEECCCCc-EEEEeCccccccc
Confidence 322 22344689999999987 6776665444433
No 216
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.33 E-value=1.8e-09 Score=97.32 Aligned_cols=258 Identities=10% Similarity=0.061 Sum_probs=156.0
Q ss_pred ceeccCCceEEEEEecC-----CcceeEEEEEecCCCCCCceeeecccccC--------cCcceeecccCCCCCCCCCcE
Q 013827 79 MTINPNDAVIVCARNED-----DVSHLEVYILEESDGGDPNLYVHHHIIIP--------AFPLCMAWLDCPLKDREKGNF 145 (436)
Q Consensus 79 ~~~sp~~~~l~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~s~~~~~ 145 (436)
++++|||+.+.++.... +...-.|.+|+.... ..... ..++ ..|..+.+ +|||++
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~---~v~~~--I~v~~g~r~~~g~~P~~~a~-------spDGk~ 150 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL---LPTAD--IELPDAPRFLVGTYPWMTSL-------TPDGKT 150 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC---CEEEE--EEETTCCCCCBSCCGGGEEE-------CTTSSE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC---eEEEE--EECCCccccccCCCCceEEE-------cCCCCE
Confidence 99999999888875310 000126888888765 22111 1111 13334444 999999
Q ss_pred EEEeeC--CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCC
Q 013827 146 MAVGSM--EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK 223 (436)
Q Consensus 146 l~~g~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg 223 (436)
|.++.. ++.|.|+|+.+.+.+..+... + +....|.+...+++.+.||
T Consensus 151 lyVan~~~~~~VsVID~~t~~vv~tI~v~-------------------------g------~~~~~P~g~~~~~~~~~DG 199 (386)
T 3sjl_D 151 LLFYQFSPAPAVGVVDLEGKAFKRMLDVP-------------------------D------CYHIFPTAPDTFFMHCRDG 199 (386)
T ss_dssp EEEEECSSSCEEEEEETTTTEEEEEEECC-------------------------S------EEEEEEEETTEEEEEETTS
T ss_pred EEEEEcCCCCeEEEEECCCCcEEEEEECC-------------------------C------cceeecCCCceeEEECCCC
Confidence 988864 689999999876655443210 1 1112344445677888899
Q ss_pred cEEEEeCCC-CeEEEEEccc----CCCeE-EEEEc-CCCCCEEEEEECCCcEEEEecCCCCCcc-ceEe-----------
Q 013827 224 QVKIWDVAA-GKCNLTLEHH----TDKVQ-AVAWN-HHSPQILLSGSFDRSVVMKDARISTHSG-FKWA----------- 284 (436)
Q Consensus 224 ~v~vwd~~~-~~~~~~~~~~----~~~v~-~~~~~-~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~----------- 284 (436)
.+.+.++.+ ++.......+ ..++. ...|. ++| ++++ .+.+|.|.+.|+.+..... ....
T Consensus 200 ~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~ 277 (386)
T 3sjl_D 200 SLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW 277 (386)
T ss_dssp CEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTE
T ss_pred CEEEEECCCCCeEEEeecceeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcceeecceeccccccccccc
Confidence 999999876 5543222111 12222 23554 555 4444 6668999999997654211 1111
Q ss_pred eeCCeeEEEeCCCCCcEEEEEeC---------CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEE
Q 013827 285 VAADVESLAWDPHAEHSFVVSLE---------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA 355 (436)
Q Consensus 285 ~~~~i~~~~~~~~~~~~~~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 355 (436)
.......+++++++..++++-.. .+.|.++|+.+. +.+..+... ..+..++++|++..+|+
T Consensus 278 ~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~---------kv~~~i~vg-~~~~~lavs~D~~~~ly 347 (386)
T 3sjl_D 278 RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---------ERLAKFEMG-HEIDSINVSQDEKPLLY 347 (386)
T ss_dssp EECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---------CEEEEEEEE-EEECEEEECSSSSCEEE
T ss_pred cCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC---------eEEEEEECC-CCcceEEECCCCCeEEE
Confidence 23444567778887655554431 257999999987 445555432 36789999999843666
Q ss_pred EE-eCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCC
Q 013827 356 TG-STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED 394 (436)
Q Consensus 356 ~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 394 (436)
+. ..++.|.++|..+++........+| -+.|.+++|
T Consensus 348 ~tn~~~~~VsViD~~t~k~~~~i~~~~~---p~~l~~s~d 384 (386)
T 3sjl_D 348 ALSTGDKTLYIHDAESGEELRSVNQLGH---GPQVITTAD 384 (386)
T ss_dssp EEETTTTEEEEEETTTCCEEEEECCCCS---SCCEEEECC
T ss_pred EEcCCCCeEEEEECCCCcEEEEecCCCC---CceeEECCc
Confidence 64 4589999999999985444443443 334555555
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.31 E-value=1.3e-09 Score=96.52 Aligned_cols=208 Identities=9% Similarity=0.058 Sum_probs=137.5
Q ss_pred cccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCC
Q 013827 199 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 278 (436)
Q Consensus 199 h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 278 (436)
+..-..+..|+|++..++++...++.|..||..+++. ..+. ....+.++++++++ .++++ . ++.|.+||..+...
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG-~l~v~-~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSG-GYVAT-I-GTKFCALNWKEQSA 85 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTS-SEEEE-E-TTEEEEEETTTTEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCC-CEEEE-E-CCeEEEEECCCCcE
Confidence 3445668899997666777878889999999988764 3333 45679999999999 65444 4 67899999876553
Q ss_pred ccceEe----eeCCeeEEEeCCCCCcEEEEEeC---------CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEE
Q 013827 279 SGFKWA----VAADVESLAWDPHAEHSFVVSLE---------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS 345 (436)
Q Consensus 279 ~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 345 (436)
...... ....+..++++|+|. ++++... ...-.+|.+.... . ...+.......+.++
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g--------~-~~~~~~~~~~pngi~ 155 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDH--------H-VKKYFDQVDISNGLD 155 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTS--------C-EEEEEEEESBEEEEE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCC--------C-EEEEeeccccccceE
Confidence 321111 113478899999884 5554322 1233455544321 1 222333445568999
Q ss_pred ecCCCCCEEEEEeCCCcEEEEEC--CCCCce---eEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccc
Q 013827 346 YNPLVPNLLATGSTDKMVKLWDL--SNNQPS---CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 420 (436)
Q Consensus 346 ~~p~~~~~l~~~~~d~~i~iwd~--~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (436)
|+|++..++++.+.++.|.+|++ .++... ....+..+.+....++++++|. ++++....+.|.+||..+++.+.
T Consensus 156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTGKRLQ 234 (297)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTCCEEE
T ss_pred EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCceEEE
Confidence 99998334556666889999987 444421 1222333345688999999997 67777778889999998887765
Q ss_pred cc
Q 013827 421 NR 422 (436)
Q Consensus 421 ~~ 422 (436)
..
T Consensus 235 ~i 236 (297)
T 3g4e_A 235 TV 236 (297)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 218
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.24 E-value=3e-10 Score=102.58 Aligned_cols=238 Identities=12% Similarity=-0.060 Sum_probs=139.7
Q ss_pred cEEEEeeCCC----cEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 144 NFMAVGSMEP----AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 144 ~~l~~g~~dg----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
..+++-..++ +|.++|..+.+.+..+.. +. .+ .+.++|+++ .++.+
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~v--------------------------G~-~P--~i~~spDg~-~lyVa 82 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLG--------------------------AF-LS--LAVAGHSGS-DFALA 82 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEE--------------------------CT-TC--EEEECTTSS-CEEEE
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEeC--------------------------CC-CC--ceEECCCCC-EEEEE
Confidence 3444444444 788999988776654322 22 23 799999986 45555
Q ss_pred e----------CCCcEEEEeCCCCeEEEEEccc-------CCCeEEEEEcCCCCCEEEEEEC--CCcEEE--EecCCCCC
Q 013827 220 S----------ADKQVKIWDVAAGKCNLTLEHH-------TDKVQAVAWNHHSPQILLSGSF--DRSVVM--KDARISTH 278 (436)
Q Consensus 220 ~----------~dg~v~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s~~~--d~~i~~--wd~~~~~~ 278 (436)
. .++.|.+||+.+++.+.++... ......+.++|+| ++++++.. +..+.+ +|+.+
T Consensus 83 n~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDG-k~lyVan~~~~~~v~V~~iD~~t--- 158 (368)
T 1mda_H 83 STSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS-ACLLFFLFGSSAAAGLSVPGASD--- 158 (368)
T ss_dssp EEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTS-SCEEEEECSSSCEEEEEETTTEE---
T ss_pred cccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCC-CEEEEEccCCCCeEEEEEEchhh---
Confidence 4 4689999999999999888643 1345689999999 66666664 467888 89876
Q ss_pred ccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCC-----CCCCCC----CC-CC----------------cccE
Q 013827 279 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT-----AKSDPD----ST-SQ----------------QSSF 332 (436)
Q Consensus 279 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~-----~~~~~~----~~-~~----------------~~~~ 332 (436)
.. .....+. ..+.|++...+++.+.|+.+.+.|+.+ ++.... .. .. ..+.
T Consensus 159 v~-~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~ 234 (368)
T 1mda_H 159 DQ-LTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSIL 234 (368)
T ss_dssp EE-EEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCE
T ss_pred ce-EEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEE
Confidence 11 1111111 111233333333334444444444433 100000 00 00 0000
Q ss_pred EEec--------------------c---CCCeEEEEecCCCCCEEEEE-e---C-----CCcEEEEECCCCCceeEEeeC
Q 013827 333 TLHA--------------------H---DKAVCTISYNPLVPNLLATG-S---T-----DKMVKLWDLSNNQPSCIASRN 380 (436)
Q Consensus 333 ~~~~--------------------~---~~~v~~~~~~p~~~~~l~~~-~---~-----d~~i~iwd~~~~~~~~~~~~~ 380 (436)
.+.. + ......++++|++ ..++++ . . ++.+.++|+.+.+. +..+.
T Consensus 235 viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg-~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v--v~~i~ 311 (368)
T 1mda_H 235 QGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQT--SGPIS 311 (368)
T ss_dssp EEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCE--EECCE
T ss_pred EEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCC-CEEEEEeccccCcccccCCCEEEEECCCCeE--EEEEE
Confidence 0000 0 0111226899998 455543 3 2 23566999999874 33332
Q ss_pred CCCCcEEEEEEcCCCCcEEEEEe-CCCcEEEEeCCCCccccccc
Q 013827 381 PKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSDAGISNRF 423 (436)
Q Consensus 381 ~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~ 423 (436)
... ...+++|+|||++++++.. .++.|.++|+.+++.+.+..
T Consensus 312 vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 312 NGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp EEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred CCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 211 5789999999987788887 69999999999999887654
No 219
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.24 E-value=4.4e-09 Score=96.58 Aligned_cols=242 Identities=10% Similarity=0.064 Sum_probs=150.8
Q ss_pred cceeccCCceEEEEEecCC-----cceeEEEEEecCCCCCCceeeecccccC--------cCcceeecccCCCCCCCCCc
Q 013827 78 DMTINPNDAVIVCARNEDD-----VSHLEVYILEESDGGDPNLYVHHHIIIP--------AFPLCMAWLDCPLKDREKGN 144 (436)
Q Consensus 78 ~~~~sp~~~~l~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~s~~~~ 144 (436)
.++++||++.|.++..... ...-.|.+++.... .... ...++ ..|..+ .++|||+
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~---~vv~--~I~v~g~~r~~~g~~P~~~-------~~spDGk 189 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF---LPIA--DIELPDAPRFLVGTYQWMN-------ALTPDNK 189 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC---CEEE--EEEETTCCCCCBSCCGGGS-------EECTTSS
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC---cEEE--EEECCCccccccCCCcceE-------EEcCCCC
Confidence 7999999999988863100 00127888888765 2211 11111 122233 3499999
Q ss_pred EEEEeeC--CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCC
Q 013827 145 FMAVGSM--EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 222 (436)
Q Consensus 145 ~l~~g~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 222 (436)
+|.++.. ++.|.+.|+.+.+.+..+.+ +. +....|++...+++.+.|
T Consensus 190 ~lyV~n~~~~~~VsVID~~t~kvv~~I~v--------------------------~g-----~~~~~p~g~~~~v~~~~d 238 (426)
T 3c75_H 190 NLLFYQFSPAPAVGVVDLEGKTFDRMLDV--------------------------PD-----CYHIFPASPTVFYMNCRD 238 (426)
T ss_dssp EEEEEECSSSCEEEEEETTTTEEEEEEEC--------------------------CS-----EEEEEEEETTEEEEEETT
T ss_pred EEEEEecCCCCeEEEEECCCCeEEEEEEc--------------------------CC-----ceeeccCCCcEEEEEcCC
Confidence 9999874 57899999987665443211 11 123345544566777788
Q ss_pred CcEEEEeCCCCeEEEE----EcccCCCe-EEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccc-eE-----------ee
Q 013827 223 KQVKIWDVAAGKCNLT----LEHHTDKV-QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-KW-----------AV 285 (436)
Q Consensus 223 g~v~vwd~~~~~~~~~----~~~~~~~v-~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~-----------~~ 285 (436)
|.+.+.+..+++.... +.....++ ..+.+.+++ ..++..+..+.+.+.|+........ .. ..
T Consensus 239 G~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~ 317 (426)
T 3c75_H 239 GSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS-GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWR 317 (426)
T ss_dssp SSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT-CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEE
T ss_pred CCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC-CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccc
Confidence 8888888866654432 21111221 235678888 5555556788999999865432110 00 11
Q ss_pred eCCeeEEEeCCCCCcEEEEEe---------CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEE
Q 013827 286 AADVESLAWDPHAEHSFVVSL---------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT 356 (436)
Q Consensus 286 ~~~i~~~~~~~~~~~~~~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 356 (436)
......++++|++..++++.. .++.|.++|..+. +.+..+... .....+.|+|++..++++
T Consensus 318 p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~---------kvv~~I~vg-~~P~gia~spDg~~~lyv 387 (426)
T 3c75_H 318 PGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG---------ERINKIELG-HEIDSINVSQDAEPLLYA 387 (426)
T ss_dssp ECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC---------CEEEEEEEE-EEECEEEECCSSSCEEEE
T ss_pred cCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC---------eEEEEEECC-CCcCeEEEccCCCEEEEE
Confidence 233334688998866555543 1357999999987 445555432 247899999999327777
Q ss_pred Ee-CCCcEEEEECCCCCc
Q 013827 357 GS-TDKMVKLWDLSNNQP 373 (436)
Q Consensus 357 ~~-~d~~i~iwd~~~~~~ 373 (436)
.. .++.|.++|+.+.+.
T Consensus 388 ~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 388 LSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp EETTTTEEEEEETTTCCE
T ss_pred EcCCCCeEEEEECCCCCE
Confidence 77 599999999999984
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.22 E-value=9.5e-09 Score=92.14 Aligned_cols=227 Identities=11% Similarity=0.075 Sum_probs=136.4
Q ss_pred cccceeccCCceEEEEE-ecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCCc
Q 013827 76 LEDMTINPNDAVIVCAR-NEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA 154 (436)
Q Consensus 76 v~~~~~sp~~~~l~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 154 (436)
.....|+|++..++... ..+ .|+.|+...+ ..... ..+..+.++.| +++|+++++. .+ .
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~-----~i~~~d~~~~---~~~~~---~~~~~v~~i~~-------~~dg~l~v~~-~~-g 110 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILER-----ELHELHLASG---RKTVH---ALPFMGSALAK-------ISDSKQLIAS-DD-G 110 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGT-----EEEEEETTTT---EEEEE---ECSSCEEEEEE-------EETTEEEEEE-TT-E
T ss_pred CcCCeEeCCCCEEEEEECCCC-----EEEEEECCCC---cEEEE---ECCCcceEEEE-------eCCCeEEEEE-CC-C
Confidence 46689999855444443 333 7888887654 22111 12344566666 7889877764 34 4
Q ss_pred EEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC------CCcEEEE
Q 013827 155 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA------DKQVKIW 228 (436)
Q Consensus 155 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~------dg~v~vw 228 (436)
|.+||..+++.... .. . ........+.+++++|+|. ++++... .+.|..+
T Consensus 111 l~~~d~~~g~~~~~-~~--------------------~--~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~ 166 (326)
T 2ghs_A 111 LFLRDTATGVLTLH-AE--------------------L--ESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHV 166 (326)
T ss_dssp EEEEETTTCCEEEE-EC--------------------S--STTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEE
T ss_pred EEEEECCCCcEEEE-ee--------------------C--CCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEE
Confidence 99999876442110 00 0 0001234688999999985 5554432 2455555
Q ss_pred eCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC--CC-CCc--cceEe---eeCCeeEEEeCCCCCc
Q 013827 229 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR--IS-THS--GFKWA---VAADVESLAWDPHAEH 300 (436)
Q Consensus 229 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~--~~-~~~--~~~~~---~~~~i~~~~~~~~~~~ 300 (436)
+ +++... +..+......++|+|++..++++.+.++.|.+||+. ++ ... ..... ....+..+++++++ +
T Consensus 167 ~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~ 242 (326)
T 2ghs_A 167 A--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-H 242 (326)
T ss_dssp E--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-C
T ss_pred e--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-C
Confidence 5 455433 322334578999999993344555567899999986 43 221 11111 12446788999987 5
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEec-CCCCCEEEEEeCC
Q 013827 301 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN-PLVPNLLATGSTD 360 (436)
Q Consensus 301 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~~~~~d 360 (436)
++++...++.|..||.. + ..+..+..+...+++++|. |++..++++...+
T Consensus 243 lwva~~~~~~v~~~d~~-g---------~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 243 IWNARWGEGAVDRYDTD-G---------NHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEEEEETTTEEEEECTT-C---------CEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred EEEEEeCCCEEEEECCC-C---------CEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 66666667889999983 3 3345555666679999998 8873344444444
No 221
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.21 E-value=2.3e-08 Score=86.85 Aligned_cols=207 Identities=8% Similarity=0.065 Sum_probs=136.7
Q ss_pred cceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc
Q 013827 201 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG 280 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 280 (436)
..+.+++|++++..++++-..++.|..+++........+.........+++++++..++++-...+.|.++++.......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 45789999997655666666678999999876654444433335778999999764666666667899999987543222
Q ss_pred ceEee-eCCeeEEEeCCCCCcEEEEEeC--CCcEEEEeCCCCCCCCCCCCCcccEEE-eccCCCeEEEEecCCCCCEEEE
Q 013827 281 FKWAV-AADVESLAWDPHAEHSFVVSLE--DGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLAT 356 (436)
Q Consensus 281 ~~~~~-~~~i~~~~~~~~~~~~~~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~ 356 (436)
.... ......++++|++..++++... .+.|..+++... . ...+ .........++++|++..++++
T Consensus 116 -~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~---------~-~~~~~~~~~~~P~gia~d~~~~~lyv~ 184 (267)
T 1npe_A 116 -LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT---------N-RRILAQDNLGLPNGLTFDAFSSQLCWV 184 (267)
T ss_dssp -EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC---------C-CEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred -EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC---------C-cEEEEECCCCCCcEEEEcCCCCEEEEE
Confidence 2221 2467899999976555555544 468888887543 1 1222 1233467899999987445555
Q ss_pred EeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccc
Q 013827 357 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 423 (436)
Q Consensus 357 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (436)
-...+.|.++|.......... .. ......++.. +.+++++....+.|.++|..+++.+....
T Consensus 185 d~~~~~I~~~~~~g~~~~~~~--~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 185 DAGTHRAECLNPAQPGRRKVL--EG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp ETTTTEEEEEETTEEEEEEEE--EC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred ECCCCEEEEEecCCCceEEEe--cC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 556789999999765422222 22 2334677764 44467766677899999999888776643
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.19 E-value=2.5e-09 Score=94.96 Aligned_cols=224 Identities=15% Similarity=0.106 Sum_probs=136.8
Q ss_pred CCCCc-EEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 140 REKGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 140 s~~~~-~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
+|+++ +++++..++.|..|+.. ++ ... +..+...+..++++++|. ++++
T Consensus 53 ~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~---------------------------~~~~~~~~~gl~~d~dG~-l~v~ 102 (305)
T 3dr2_A 53 WEAQRTLVWSDLVGRRVLGWRED-GT-VDV---------------------------LLDATAFTNGNAVDAQQR-LVHC 102 (305)
T ss_dssp EGGGTEEEEEETTTTEEEEEETT-SC-EEE---------------------------EEESCSCEEEEEECTTSC-EEEE
T ss_pred eCCCCEEEEEECCCCEEEEEeCC-CC-EEE---------------------------EeCCCCccceeeECCCCC-EEEE
Confidence 78888 66777788999999873 22 111 112455688999999974 6655
Q ss_pred EeCCCcEEEEeCCCCeEEEEEccc----CCCeEEEEEcCCCCCEEEE----EEC-------------CCcEEEEecCCCC
Q 013827 219 ASADKQVKIWDVAAGKCNLTLEHH----TDKVQAVAWNHHSPQILLS----GSF-------------DRSVVMKDARIST 277 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s----~~~-------------d~~i~~wd~~~~~ 277 (436)
...++.|.+|+.. ++........ ...+..+.++++| .++++ |.. .+.|..+|..+++
T Consensus 103 ~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~ 180 (305)
T 3dr2_A 103 EHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP 180 (305)
T ss_dssp ETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC
T ss_pred ECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc
Confidence 5556789999986 5533222211 2346789999999 77775 322 2457777776555
Q ss_pred CccceEeeeCCeeEEEeCCCCCcEEEEEeC-----CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCC
Q 013827 278 HSGFKWAVAADVESLAWDPHAEHSFVVSLE-----DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 352 (436)
Q Consensus 278 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 352 (436)
..... .......++|+|++..++++... .+.|..|++..... ................+++.++| +
T Consensus 181 ~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l------~~~~~~~~~~~~~pdgi~~d~~G-~ 251 (305)
T 3dr2_A 181 LQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL------HDRRHFASVPDGLPDGFCVDRGG-W 251 (305)
T ss_dssp CEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE------EEEEEEECCSSSCCCSEEECTTS-C
T ss_pred EEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc------cCCeEEEECCCCCCCeEEECCCC-C
Confidence 44322 44567889999988544444333 27899999875410 00001111123445678999998 6
Q ss_pred EEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 013827 353 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 353 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 412 (436)
+.++ ..+ .|.+|+.. ++. +..+.... .+.+++|+|+++. |..++.++ +..++
T Consensus 252 lwv~-~~~-gv~~~~~~-g~~--~~~~~~~~-~~~~~~f~~d~~~-L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 252 LWSS-SGT-GVCVFDSD-GQL--LGHIPTPG-TASNCTFDQAQQR-LFITGGPC-LWMLP 303 (305)
T ss_dssp EEEC-CSS-EEEEECTT-SCE--EEEEECSS-CCCEEEECTTSCE-EEEEETTE-EEEEE
T ss_pred EEEe-cCC-cEEEECCC-CCE--EEEEECCC-ceeEEEEeCCCCE-EEEEcCCe-EEEEE
Confidence 4443 444 59999985 442 22233223 4788999999885 44455554 44333
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.17 E-value=7.8e-09 Score=91.79 Aligned_cols=226 Identities=12% Similarity=-0.024 Sum_probs=136.4
Q ss_pred cccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCC
Q 013827 74 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP 153 (436)
Q Consensus 74 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 153 (436)
.......|+|+++.|+.....+ ..|+.|+.... ...+.. ....+..+.+ +++|+++++...++
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~----~~i~~~~~~g~--~~~~~~----~~~~~~gl~~-------d~dG~l~v~~~~~~ 107 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVG----RRVLGWREDGT--VDVLLD----ATAFTNGNAV-------DAQQRLVHCEHGRR 107 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTT----TEEEEEETTSC--EEEEEE----SCSCEEEEEE-------CTTSCEEEEETTTT
T ss_pred cCccCCeEeCCCCEEEEEECCC----CEEEEEeCCCC--EEEEeC----CCCccceeeE-------CCCCCEEEEECCCC
Confidence 4567789999999554443332 17777776322 111211 1223445555 88999777666668
Q ss_pred cEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccC-cccceeEEEecCCCCcEEEE----EeC-------
Q 013827 154 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS-HTDSVLGLAWNKEFRNILAS----ASA------- 221 (436)
Q Consensus 154 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s----~~~------- 221 (436)
.|.+|+.+ ++. .... ....+ ....+.++++.|+|. ++++ |..
T Consensus 108 ~v~~~~~~-g~~-~~~~-----------------------~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~ 161 (305)
T 3dr2_A 108 AITRSDAD-GQA-HLLV-----------------------GRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCP 161 (305)
T ss_dssp EEEEECTT-SCE-EEEE-----------------------CEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCC
T ss_pred EEEEECCC-CCE-EEEE-----------------------eccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccc
Confidence 89999875 221 1100 00011 124577899999974 6665 332
Q ss_pred ------CCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECC------CcEEEEecCCCCCccceEe----e
Q 013827 222 ------DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD------RSVVMKDARISTHSGFKWA----V 285 (436)
Q Consensus 222 ------dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~----~ 285 (436)
.+.|..+|..+++..... .......++|+|++ ..|+.+... +.|..|++.... ...... .
T Consensus 162 ~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~ 237 (305)
T 3dr2_A 162 ADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVP 237 (305)
T ss_dssp CCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCS
T ss_pred cccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECC
Confidence 256788887666644333 33467889999999 666666554 789999987543 110111 1
Q ss_pred eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCC
Q 013827 286 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK 361 (436)
Q Consensus 286 ~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~ 361 (436)
...+..++++++|. +.++..+ .|.+|+... ..+..+..+. .+..++|.|++ +.|..++.++
T Consensus 238 ~~~pdgi~~d~~G~--lwv~~~~-gv~~~~~~g----------~~~~~~~~~~-~~~~~~f~~d~-~~L~it~~~~ 298 (305)
T 3dr2_A 238 DGLPDGFCVDRGGW--LWSSSGT-GVCVFDSDG----------QLLGHIPTPG-TASNCTFDQAQ-QRLFITGGPC 298 (305)
T ss_dssp SSCCCSEEECTTSC--EEECCSS-EEEEECTTS----------CEEEEEECSS-CCCEEEECTTS-CEEEEEETTE
T ss_pred CCCCCeEEECCCCC--EEEecCC-cEEEECCCC----------CEEEEEECCC-ceeEEEEeCCC-CEEEEEcCCe
Confidence 23456788999874 4444444 499999743 3344454444 58899999887 6677666654
No 224
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.14 E-value=3.8e-08 Score=89.48 Aligned_cols=233 Identities=16% Similarity=0.100 Sum_probs=140.5
Q ss_pred CCCcEEEE-eeCCCcEEEEeCCCCCCCcce-eeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 141 EKGNFMAV-GSMEPAIEIWDLDVIDEVQPH-VILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 141 ~~~~~l~~-g~~dg~i~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
++.++|++ |..++.|.|+|+.+....... ..... ..+.. -.+ ...-..+...|+| ++++
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~---------------~~~~~-~~g-~s~Ph~~~~~pdG--i~Vs 153 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEP---------------EEVKK-VSG-YSRLHTVHCGPDA--IYIS 153 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECH---------------HHHHH-HHC-EEEEEEEEECSSC--EEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeech---------------hhccc-ccC-CCcccceeECCCe--EEEE
Confidence 77777765 556789999998643221110 00000 00000 001 1134566778996 6666
Q ss_pred EeCC------CcEEEEeCCCCeEEEEEcccC---CCeEEEEEcCCCCCEEEEEE-------------------CCCcEEE
Q 013827 219 ASAD------KQVKIWDVAAGKCNLTLEHHT---DKVQAVAWNHHSPQILLSGS-------------------FDRSVVM 270 (436)
Q Consensus 219 ~~~d------g~v~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~s~~-------------------~d~~i~~ 270 (436)
+..+ |.|.+.|.++.+.+..+.... ..-..+.|+|++ +.+++.. .+.+|.+
T Consensus 154 ~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v 232 (462)
T 2ece_A 154 ALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHF 232 (462)
T ss_dssp EEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEE
T ss_pred cCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEE
Confidence 6555 789999999999998886322 224568889999 7777774 4789999
Q ss_pred EecCCCCCccceEeee---CCeeEEEe--CCCCCcEEEEEe-----CCCcEEEEeCCCCCCCCCCCCCcccEEE--ec--
Q 013827 271 KDARISTHSGFKWAVA---ADVESLAW--DPHAEHSFVVSL-----EDGTIKGFDIRTAKSDPDSTSQQSSFTL--HA-- 336 (436)
Q Consensus 271 wd~~~~~~~~~~~~~~---~~i~~~~~--~~~~~~~~~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~-- 336 (436)
||+.+.+... ..... .....+.| +|++...++++- .+++|.+|....+. ......+ ..
T Consensus 233 ~D~~~~k~~~-tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-------~~~~~vIdi~~~~ 304 (462)
T 2ece_A 233 WDLRKRKRIH-SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-------WNAEKVIEIPAEP 304 (462)
T ss_dssp EETTTTEEEE-EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-------EEEEEEEEECCEE
T ss_pred EECCCCcEee-EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-------eeEEEEEeCCCcc
Confidence 9999764433 22222 23445555 998866666666 77788776654321 0111111 00
Q ss_pred --------------cCCCeEEEEecCCCCCEEEEEeC-CCcEEEEECCCC-CceeEEeeCCC--------------CCcE
Q 013827 337 --------------HDKAVCTISYNPLVPNLLATGST-DKMVKLWDLSNN-QPSCIASRNPK--------------AGAV 386 (436)
Q Consensus 337 --------------~~~~v~~~~~~p~~~~~l~~~~~-d~~i~iwd~~~~-~~~~~~~~~~~--------------~~~v 386 (436)
-......+.++|++ ++|+++.. .+.|.+||+... ++..+...... .+.-
T Consensus 305 v~~~lp~~~~~f~~~~~~pa~I~lS~DG-rfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggP 383 (462)
T 2ece_A 305 LEGNLPEILKPFKAVPPLVTDIDISLDD-KFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAP 383 (462)
T ss_dssp CCSSCCGGGGGGTEECCCCCCEEECTTS-CEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCC
T ss_pred ccccccccccccccCCCceeEEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCC
Confidence 02456889999999 66666655 789999998633 23233332211 0135
Q ss_pred EEEEEcCCCCcEEEEE
Q 013827 387 FSVAFSEDSPFVLAIG 402 (436)
Q Consensus 387 ~~~~~~~~~~~~l~s~ 402 (436)
..++++|||++++++.
T Consensus 384 r~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 384 QMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCEEECTTSSEEEEEC
T ss_pred CEEEEcCCCCEEEEEc
Confidence 7899999999755544
No 225
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.12 E-value=3.4e-09 Score=99.70 Aligned_cols=247 Identities=11% Similarity=0.094 Sum_probs=160.6
Q ss_pred CCCcEEEEeeC-CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEe-c-CCCCcEEE
Q 013827 141 EKGNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-N-KEFRNILA 217 (436)
Q Consensus 141 ~~~~~l~~g~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~-~~~~~~l~ 217 (436)
+||++|.+... ++.|.+.|+++.+....+.+ .....+..+++ + |++. +++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i--------------------------p~g~~phg~~~~~~p~~~-~v~ 151 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEI--------------------------PNAKGIHGLRPQKWPRSN-YVF 151 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEEC--------------------------SSCCSEEEEEECCSSBCS-EEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeC--------------------------CCCCCCcceeeeecCCCc-EEE
Confidence 47888877665 46799999998765542211 12234667887 4 8865 666
Q ss_pred EEe------------------CCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCC-------------
Q 013827 218 SAS------------------ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR------------- 266 (436)
Q Consensus 218 s~~------------------~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~------------- 266 (436)
+++ .++.+.+.|.++.+...++..-. ....++++|+| .++++.+.+.
T Consensus 152 ~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~ 229 (595)
T 1fwx_A 152 CNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAE 229 (595)
T ss_dssp EEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCS
T ss_pred EecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCC-CEEEEEecCcccCcchhhccccc
Confidence 663 34689999999999888876433 45678899999 6777766442
Q ss_pred -------------------------cEEEEecCC--CCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 267 -------------------------SVVMKDARI--STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 319 (436)
Q Consensus 267 -------------------------~i~~wd~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 319 (436)
.|.+.|.++ .+.............++.++|||..+++++..+.+|.++|+.+.
T Consensus 230 ~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 230 MDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp EEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred cceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 467777776 33323345566788999999999877888888999999999854
Q ss_pred CCC--CCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC--------CceeEEeeCCCCCcE---
Q 013827 320 KSD--PDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN--------QPSCIASRNPKAGAV--- 386 (436)
Q Consensus 320 ~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~v--- 386 (436)
+.. ........+.....-......++|+|+| ...++.-.|++|.+||+... ....+.....|..+-
T Consensus 310 ~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~ 388 (595)
T 1fwx_A 310 DAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLK 388 (595)
T ss_dssp HHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEE
T ss_pred ccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccce
Confidence 100 0000001111111223457889999999 77777778999999998761 112444555554321
Q ss_pred --EEEEEcCCCCcEEEEEeCC-CcE-----------EEEeCCCCc
Q 013827 387 --FSVAFSEDSPFVLAIGGSK-GKL-----------EIWDTLSDA 417 (436)
Q Consensus 387 --~~~~~~~~~~~~l~s~~~d-g~i-----------~iwd~~~~~ 417 (436)
.++.++|||++++++.... ..+ .++|+..++
T Consensus 389 ~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 389 TVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp ETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred eccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 1235689999855544332 334 899996544
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.06 E-value=3e-08 Score=97.96 Aligned_cols=251 Identities=12% Similarity=0.045 Sum_probs=146.3
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEe-
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS- 220 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~- 220 (436)
.+..+++++.|+.|..+|..+++.+-...... ... ........++ .. ++ .++.++
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~---------------~~~--~~~~~~~sP~----v~-~g--~v~vg~~ 175 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRA---------------DHK--RSYTITGAPR----VV-NG--KVVIGNG 175 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCS---------------CTT--SCCBCCSCCE----EE-TT--EEEECCB
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcC---------------CCC--CCccccCCcE----EE-CC--EEEEEeC
Confidence 46678888899999999999887654321100 000 0000001111 11 32 344443
Q ss_pred -----CCCcEEEEeCCCCeEEEEEcccC-------------------------------CCeEEEEEcCCCCCEEEEEEC
Q 013827 221 -----ADKQVKIWDVAAGKCNLTLEHHT-------------------------------DKVQAVAWNHHSPQILLSGSF 264 (436)
Q Consensus 221 -----~dg~v~vwd~~~~~~~~~~~~~~-------------------------------~~v~~~~~~~~~~~~l~s~~~ 264 (436)
.+|.|..||..+|+.+..+.... .....++++|+. .+++.+..
T Consensus 176 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~ 254 (689)
T 1yiq_A 176 GAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVG 254 (689)
T ss_dssp CTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECC
T ss_pred CCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCC
Confidence 36899999999999887764210 011257788887 67888877
Q ss_pred CCc-------------------EEEEecCCCCCccceEee---------eCCeeEEEeCCCCC--cEEEEEeCCCcEEEE
Q 013827 265 DRS-------------------VVMKDARISTHSGFKWAV---------AADVESLAWDPHAE--HSFVVSLEDGTIKGF 314 (436)
Q Consensus 265 d~~-------------------i~~wd~~~~~~~~~~~~~---------~~~i~~~~~~~~~~--~~~~~~~~dg~i~i~ 314 (436)
++. |..+|.++++..-..... ...+.......++. ..++.++.+|.++++
T Consensus 255 ~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~l 334 (689)
T 1yiq_A 255 NGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVI 334 (689)
T ss_dssp CEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred CCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEE
Confidence 753 999999988765432221 11122222222331 368888999999999
Q ss_pred eCCCCCCCCCCCCCc-cc-EEEe-----------------ccC-----------CCeEEEEecCCCCCEEEEEeC-----
Q 013827 315 DIRTAKSDPDSTSQQ-SS-FTLH-----------------AHD-----------KAVCTISYNPLVPNLLATGST----- 359 (436)
Q Consensus 315 d~~~~~~~~~~~~~~-~~-~~~~-----------------~~~-----------~~v~~~~~~p~~~~~l~~~~~----- 359 (436)
|.++++......... .. ..+. ... ..-..++|+|+. .++++...
T Consensus 335 D~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~-~~~yv~~~~~~~~ 413 (689)
T 1yiq_A 335 DRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT-GLVYIPAHIMSAY 413 (689)
T ss_dssp ETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEEEECCEE
T ss_pred ECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC-CEEEEecccccee
Confidence 999884310000000 00 0000 000 011237888887 56666532
Q ss_pred ----------------------------------------CCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEE
Q 013827 360 ----------------------------------------DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVL 399 (436)
Q Consensus 360 ----------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 399 (436)
+|.|..||+.+++. +.....+. ++..-.+...+. ++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~--~W~~~~~~-~~~~g~~~tagg-lv 489 (689)
T 1yiq_A 414 YEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA--AWEVPYVT-IFNGGTLSTAGN-LV 489 (689)
T ss_dssp EECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEE--EEEEEESS-SCCCCEEEETTT-EE
T ss_pred eeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCe--EeEccCCC-CccCccceECCC-EE
Confidence 37799999999984 33333222 233334555666 67
Q ss_pred EEEeCCCcEEEEeCCCCcccccc
Q 013827 400 AIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 400 ~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
+.++.||.|+.||..+++.+.+.
T Consensus 490 f~gt~dg~l~a~D~~tG~~lw~~ 512 (689)
T 1yiq_A 490 FEGSADGRVIAYAADTGEKLWEQ 512 (689)
T ss_dssp EEECTTSEEEEEETTTCCEEEEE
T ss_pred EEECCCCcEEEEECCCCccceee
Confidence 78999999999999999998654
No 227
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=99.06 E-value=7e-07 Score=79.44 Aligned_cols=211 Identities=12% Similarity=0.081 Sum_probs=134.5
Q ss_pred ccceeEEEecCCCCcEEEEEeCCCcEEEEeCCC----CeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC
Q 013827 200 TDSVLGLAWNKEFRNILASASADKQVKIWDVAA----GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 275 (436)
Q Consensus 200 ~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 275 (436)
...+.+++|.+.+..++.+-...+.|..+++.. ......+...-.....+++.+.++.++++-...+.|.+.++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 345789999987555666666678999999876 2222233322245678999876546666667788999999875
Q ss_pred CCCccceEeeeCCeeEEEeCCCCCcEEEEEeCC-CcEEEEeCCCCCCCCCCCCCcccEEE-eccCCCeEEEEecCCCCCE
Q 013827 276 STHSGFKWAVAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNL 353 (436)
Q Consensus 276 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~ 353 (436)
................++++|.+..++++.... +.|..+++... . ...+ ...-...+.++++|++..+
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~---------~-~~~~~~~~~~~P~gla~d~~~~~l 178 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---------D-IYSLVTENIQWPNGITLDLLSGRL 178 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---------C-EEEEECSSCSCEEEEEEETTTTEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC---------C-eEEEEECCCCCceEEEEeccCCEE
Confidence 433221222235678999999776666665444 78888887543 1 2222 2233567899999987455
Q ss_pred EEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 354 LATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 354 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
.++-+..+.|..+|+.......+............+++.. + .++++-...+.|..++..+++.+...
T Consensus 179 Y~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~-~-~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 179 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-T-EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEEC-C-EEEEEECCCCeEEEEeCCCCcceEEE
Confidence 5555567789999998654333333222334567888853 3 46777777889999998777765544
No 228
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.05 E-value=3.1e-11 Score=110.24 Aligned_cols=184 Identities=16% Similarity=0.081 Sum_probs=103.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEee-eCCee-E
Q 013827 214 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-AADVE-S 291 (436)
Q Consensus 214 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~i~-~ 291 (436)
..+++++.||.|+.||..+|+.+..+.. ..+.+..+..++ ..+++++.|+.|+.||..+++........ ...+. +
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 4889999999999999999999888875 455555555666 67777789999999999877654211111 10010 0
Q ss_pred EEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 013827 292 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 371 (436)
Q Consensus 292 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~ 371 (436)
..+. .+ ..+++++.++.++.||..+++ .+..+..+. ...++|++ ..+++++.|+.|+.||.+++
T Consensus 87 p~~~-~~-~~v~~g~~dg~v~a~D~~tG~---------~~w~~~~~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 87 PCRS-SD-GILYMGKKQDIWYVIDLLTGE---------KQQTLSSAF----ADSLSPST-SLLYLGRTEYTITMYDTKTR 150 (369)
T ss_dssp SCC-------CCCCEEEEEEEEECCC------------------------------------EEEEEEEEEEECCCSSSS
T ss_pred ceEe-cC-CEEEEEeCCCEEEEEECCCCc---------EEEEecCCC----cccccccC-CEEEEEecCCEEEEEECCCC
Confidence 0111 22 357778889999999999883 344443332 23456666 78888999999999999988
Q ss_pred CceeEEeeCCCCCcEEEEEEcCCC---CcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 372 QPSCIASRNPKAGAVFSVAFSEDS---PFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 372 ~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
+......... .....+.++. . .+++++.||.|+.||..+++.+.+
T Consensus 151 ~~~W~~~~~~----~~~~~~~~~~~~~~-~v~~~~~dg~v~a~d~~tG~~~W~ 198 (369)
T 2hz6_A 151 ELRWNATYFD----YAASLPEDDVDYKM-SHFVSNGDGLVVTVDSESGDVLWI 198 (369)
T ss_dssp SCCCEEEEEE----ECCBCCCCCTTCCC-CEEEEETSCEEEEECTTTCCEEEE
T ss_pred CEEEeEeccc----ccCccccCCccccc-eEEEECCCCEEEEEECCCCcEEEE
Confidence 7533322221 1122334431 3 256688999999999999987654
No 229
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.04 E-value=5.4e-08 Score=83.10 Aligned_cols=198 Identities=9% Similarity=-0.020 Sum_probs=134.5
Q ss_pred ceeEEEecCCCCcEEEEEeC--CCcEEEEeCCCCeEEEEEcccC-CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCC
Q 013827 202 SVLGLAWNKEFRNILASASA--DKQVKIWDVAAGKCNLTLEHHT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 278 (436)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 278 (436)
....++|++++ .++++.+. ++.|+++|+.+++.+..+.... .....+++. +..+.++.-.++.+.++|..+.+.
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 35799999985 45555443 5799999999999888875222 223345554 435666666789999999998776
Q ss_pred ccceEeee-CCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEecc--C---CCeEEEEecCCCCC
Q 013827 279 SGFKWAVA-ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--D---KAVCTISYNPLVPN 352 (436)
Q Consensus 279 ~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~---~~v~~~~~~p~~~~ 352 (436)
.... ... ..- ..+++++..+++ +..++.|.++|..+. +....+.-. . ..++.+.|. ++ .
T Consensus 99 ~~~i-~~g~~~g--~glt~Dg~~l~v-s~gs~~l~viD~~t~---------~v~~~I~Vg~~~~p~~~~nele~~-dg-~ 163 (266)
T 2iwa_A 99 IKNF-THQMKDG--WGLATDGKILYG-SDGTSILYEIDPHTF---------KLIKKHNVKYNGHRVIRLNELEYI-NG-E 163 (266)
T ss_dssp EEEE-ECCSSSC--CEEEECSSSEEE-ECSSSEEEEECTTTC---------CEEEEEECEETTEECCCEEEEEEE-TT-E
T ss_pred EEEE-ECCCCCe--EEEEECCCEEEE-ECCCCeEEEEECCCC---------cEEEEEEECCCCcccccceeEEEE-CC-E
Confidence 5533 222 222 334456655554 457889999999876 334443321 1 236778888 55 5
Q ss_pred EEEEEeCCCcEEEEECCCCCceeEEeeCC-----------CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 353 LLATGSTDKMVKLWDLSNNQPSCIASRNP-----------KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 353 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
+.+....++.|.+.|..+++........+ .....+.++|+|+++.+++++...+.+.+.++....
T Consensus 164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 55555568899999999998544444321 113578999999998889999899999999987643
No 230
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.03 E-value=4.6e-07 Score=78.56 Aligned_cols=216 Identities=10% Similarity=0.035 Sum_probs=131.6
Q ss_pred CCCC-cEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 140 REKG-NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 140 s~~~-~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
++++ .++++-...+.|.+++.+...... . ..........+++.+++..++++
T Consensus 44 d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~------------------------~~~~~~~p~~ia~d~~~~~lyv~ 96 (267)
T 1npe_A 44 DCVDKVVYWTDISEPSIGRASLHGGEPTT---I------------------------IRQDLGSPEGIALDHLGRTIFWT 96 (267)
T ss_dssp ETTTTEEEEEETTTTEEEEEESSSCCCEE---E------------------------ECTTCCCEEEEEEETTTTEEEEE
T ss_pred ecCCCEEEEEECCCCEEEEEecCCCCcEE---E------------------------EECCCCCccEEEEEecCCeEEEE
Confidence 6654 455555567899999986432110 0 11122457899999975556666
Q ss_pred EeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEEC--CCcEEEEecCCCCCccceEeeeCCeeEEEeCC
Q 013827 219 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF--DRSVVMKDARISTHSGFKWAVAADVESLAWDP 296 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~ 296 (436)
-...+.|.++++..................++++|+++.++++... .+.|..+++..................+++++
T Consensus 97 d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~ 176 (267)
T 1npe_A 97 DSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA 176 (267)
T ss_dssp ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEET
T ss_pred ECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcC
Confidence 6667899999987543322233222467899999976354454433 46888888764332211111224578999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeE
Q 013827 297 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 376 (436)
Q Consensus 297 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 376 (436)
++..++++....+.|..+|+... ....... .......++.. +..++++....+.|..+|..+++. +
T Consensus 177 ~~~~lyv~d~~~~~I~~~~~~g~---------~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~--~ 242 (267)
T 1npe_A 177 FSSQLCWVDAGTHRAECLNPAQP---------GRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE--M 242 (267)
T ss_dssp TTTEEEEEETTTTEEEEEETTEE---------EEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEE--E
T ss_pred CCCEEEEEECCCCEEEEEecCCC---------ceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCc--e
Confidence 87677777778899999998753 1112222 22334566654 324555555578999999988763 3
Q ss_pred EeeCCC-CCcEEEEEEcCCCC
Q 013827 377 ASRNPK-AGAVFSVAFSEDSP 396 (436)
Q Consensus 377 ~~~~~~-~~~v~~~~~~~~~~ 396 (436)
..+... ......+++.|++.
T Consensus 243 ~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 243 DTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEECCSSCCCCCCEEEECSCC
T ss_pred EEEccccccccceeeecCccC
Confidence 333322 22366788888764
No 231
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.02 E-value=1e-10 Score=106.79 Aligned_cols=204 Identities=13% Similarity=0.042 Sum_probs=108.7
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 221 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 221 (436)
++..+++++.||.|+.||..+++..-.. .. ..+.+..+..++ ..+++++.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~---------------------------~~--~~~~s~p~~~~g-~~~v~~s~ 57 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTL---------------------------KE--DPVLQVPTHVEE-PAFLPDPN 57 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEE---------------------------EC--CCSCCCC------CCEEECTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEe---------------------------cC--CCceecceEcCC-CEEEEeCC
Confidence 5788999999999999999887655321 11 233344445554 46777789
Q ss_pred CCcEEEEeCCCCeEEEEEcccCC-CeE-EEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCC
Q 013827 222 DKQVKIWDVAAGKCNLTLEHHTD-KVQ-AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 299 (436)
Q Consensus 222 dg~v~vwd~~~~~~~~~~~~~~~-~v~-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 299 (436)
||.|+.||.++++.+..+..+.. .+. +..+. .+ ..+++++.++.|+.||.++++......... ...++|++
T Consensus 58 dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~- 130 (369)
T 2hz6_A 58 DGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPST- 130 (369)
T ss_dssp TCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC-------------------------
T ss_pred CCEEEEEECCCCceeeeeeccCccccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccC-
Confidence 99999999998887666643211 010 00111 23 467788889999999999887654332222 23445644
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC--CCEEEEEeCCCcEEEEECCCCCceeEE
Q 013827 300 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV--PNLLATGSTDKMVKLWDLSNNQPSCIA 377 (436)
Q Consensus 300 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~ 377 (436)
..+++++.++.|+.||.++++ .+..+..+. .....+.++. ...+++++.||.|+.||..+++. +.
T Consensus 131 ~~v~~~~~dg~v~a~d~~tG~---------~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~--~W 197 (369)
T 2hz6_A 131 SLLYLGRTEYTITMYDTKTRE---------LRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV--LW 197 (369)
T ss_dssp --EEEEEEEEEEECCCSSSSS---------CCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE--EE
T ss_pred CEEEEEecCCEEEEEECCCCC---------EEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcE--EE
Confidence 578888899999999999873 233332111 1222333321 13567788999999999999884 33
Q ss_pred eeCCCCCcEE-EEEEcCCCC
Q 013827 378 SRNPKAGAVF-SVAFSEDSP 396 (436)
Q Consensus 378 ~~~~~~~~v~-~~~~~~~~~ 396 (436)
.... ..++. ...++++|.
T Consensus 198 ~~~~-~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 198 IQNY-ASPVVAFYVWQREGL 216 (369)
T ss_dssp EEEC-SSCEEEEEECTTSSC
T ss_pred EecC-CCceEEEEEecCCce
Confidence 3332 23443 345556663
No 232
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.00 E-value=2.6e-08 Score=98.14 Aligned_cols=243 Identities=11% Similarity=0.067 Sum_probs=149.6
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeE-EEecCCCCcEEEEEe
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASAS 220 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~ 220 (436)
++..|++++.|+.|..+|..+++.+-...... .. .....+.+ .... + . .++.++
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~---------------~~-------~~~~~~~~~p~v~-~-~-~v~v~~ 181 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFE---------------GQ-------KGSLTITGAPRVF-K-G-KVIIGN 181 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTT---------------TC-------CSSCBCCSCCEEE-T-T-EEEECC
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCc---------------Cc-------CcCcccccCcEEE-C-C-EEEEEe
Confidence 46778888899999999998877654321100 00 00011111 1111 2 2 445544
Q ss_pred C------CCcEEEEeCCCCeEEEEEcccCCC--------------------------------eEEEEEcCCCCCEEEEE
Q 013827 221 A------DKQVKIWDVAAGKCNLTLEHHTDK--------------------------------VQAVAWNHHSPQILLSG 262 (436)
Q Consensus 221 ~------dg~v~vwd~~~~~~~~~~~~~~~~--------------------------------v~~~~~~~~~~~~l~s~ 262 (436)
. ++.|+.+|..+++.+..+...... ...+++++++ ..++.+
T Consensus 182 ~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~ 260 (677)
T 1kb0_A 182 GGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVG 260 (677)
T ss_dssp BCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEE
T ss_pred cccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEE
Confidence 3 689999999999988777532211 1356788887 677777
Q ss_pred ECCC-------------------cEEEEecCCCCCccceEe--e-------eCCeeEEEeCCCCC--cEEEEEeCCCcEE
Q 013827 263 SFDR-------------------SVVMKDARISTHSGFKWA--V-------AADVESLAWDPHAE--HSFVVSLEDGTIK 312 (436)
Q Consensus 263 ~~d~-------------------~i~~wd~~~~~~~~~~~~--~-------~~~i~~~~~~~~~~--~~~~~~~~dg~i~ 312 (436)
..++ .|..+|.++++..-.... + .....-+....+|. ..++.++.+|.++
T Consensus 261 ~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~ 340 (677)
T 1kb0_A 261 TGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFF 340 (677)
T ss_dssp CCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEE
T ss_pred CCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEE
Confidence 6654 488999988876542221 1 11222233333442 5788899999999
Q ss_pred EEeCCCCCCCCCCCCCcccEEEeccC-----------CC------------------------eEEEEecCCCCCEEEEE
Q 013827 313 GFDIRTAKSDPDSTSQQSSFTLHAHD-----------KA------------------------VCTISYNPLVPNLLATG 357 (436)
Q Consensus 313 i~d~~~~~~~~~~~~~~~~~~~~~~~-----------~~------------------------v~~~~~~p~~~~~l~~~ 357 (436)
++|..+++. +....... .+ -..++|+|+. .++++.
T Consensus 341 ~lD~~tG~~---------l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~~yv~ 410 (677)
T 1kb0_A 341 VLDRTNGKF---------ISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GLVYLP 410 (677)
T ss_dssp EEETTTCCE---------EEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TEEEEE
T ss_pred EEECCCCCE---------eccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CEEEEe
Confidence 999998842 22221100 00 0256888887 666665
Q ss_pred eC-------------------------------------------CCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCC
Q 013827 358 ST-------------------------------------------DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED 394 (436)
Q Consensus 358 ~~-------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 394 (436)
.. .+.|..||+.+++. +.... +..++....+..+
T Consensus 411 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~--~W~~~-~~~~~~~g~~~~~ 487 (677)
T 1kb0_A 411 AQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA--AWSVE-HVSPWNGGTLTTA 487 (677)
T ss_dssp EEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE--EEEEE-ESSSCCCCEEEET
T ss_pred ChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE--EeecC-CCCCCcCcceEeC
Confidence 33 27799999999884 33332 2223444556667
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCcccccccc
Q 013827 395 SPFVLAIGGSKGKLEIWDTLSDAGISNRFS 424 (436)
Q Consensus 395 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (436)
+. +++.++.||.+++||..+++.+.+...
T Consensus 488 g~-~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 488 GN-VVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp TT-EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CC-EEEEECCCCcEEEEECCCCceeeeeeC
Confidence 76 577789999999999999999876543
No 233
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.00 E-value=2e-08 Score=94.58 Aligned_cols=254 Identities=12% Similarity=0.128 Sum_probs=159.3
Q ss_pred EEEeeCCCcEEEEeCCCCCCCcceeeecccchh--------hhhhcccCC---------Cccc-ccccccCcccceeEEE
Q 013827 146 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE--------KKKKKSKKG---------KKSS-IKYKKGSHTDSVLGLA 207 (436)
Q Consensus 146 l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~---------~~~~-~~~~~~~h~~~v~~~~ 207 (436)
|.+|+..|.++|+-+.+++.+..+.++...+.. .+.. .... .... ....=..|. -.++
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l-~~~~~~~~~~~~~~~g~~~~~~gd~hh---~~~s 93 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIH-ERTMSERTKKFLAANGKRIHDNGDLHH---VHMS 93 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHH-HTTCCHHHHHHHHHTTCSSCCCCCBCC---EEEE
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHH-hccCCccchhhhhccCceecccCCCCc---cccC
Confidence 678999999999999999988777666543321 1111 1000 0000 010111121 2333
Q ss_pred e---cCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcc-cCCCeEEEEE-c-CCCCCEEEEEE------------------
Q 013827 208 W---NKEFRNILASASADKQVKIWDVAAGKCNLTLEH-HTDKVQAVAW-N-HHSPQILLSGS------------------ 263 (436)
Q Consensus 208 ~---~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~~l~s~~------------------ 263 (436)
+ .+||+.++++...++.|.+.|+.+.++...+.- ....+..+++ + |++ .++++++
T Consensus 94 ~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~~~ 172 (595)
T 1fwx_A 94 FTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVAN 172 (595)
T ss_dssp EETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGGG
T ss_pred CCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCC-cEEEEecccccccCCCCcccccccc
Confidence 3 337765555555667899999999998885532 2346788888 4 888 6666664
Q ss_pred CCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCC-----------------------------------
Q 013827 264 FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED----------------------------------- 308 (436)
Q Consensus 264 ~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d----------------------------------- 308 (436)
.++.+.+.|..+.+... .....+....++++|++...++++..+
T Consensus 173 ~~~~vtvID~~t~~v~~-qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~ 251 (595)
T 1fwx_A 173 YVNVFTAVDADKWEVAW-QVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ 251 (595)
T ss_dssp EEEEEEEEETTTTEEEE-EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred cCceEEEEECCCCeEEE-EEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence 34678999998765443 333334667888999885444444332
Q ss_pred --CcEEEEeCCCCCCCCCCCCCcc-cEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc----------ee
Q 013827 309 --GTIKGFDIRTAKSDPDSTSQQS-SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----------SC 375 (436)
Q Consensus 309 --g~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~----------~~ 375 (436)
+.|.+.|.++.+ ... +..+.. .....++.++|||..+++++..+.+|.++|+.+.+. ..
T Consensus 252 ~i~~V~VID~~~~~-------~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v 323 (595)
T 1fwx_A 252 ELNGVKVVDGRKEA-------SSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV 323 (595)
T ss_dssp EETTEEEEECSGGG-------CCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred EECcEEEEeCcccC-------CceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence 136666666520 012 223332 234578999999944555555689999999986421 12
Q ss_pred EEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 376 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 376 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
...... ......++|+|+| +++++...|+.|.+||+..
T Consensus 324 ~~~v~v-G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 324 VAEPEL-GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EECCBC-CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred EEEcCC-CCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 223332 3357899999999 6788888999999999977
No 234
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.98 E-value=2e-08 Score=90.66 Aligned_cols=251 Identities=10% Similarity=-0.028 Sum_probs=148.8
Q ss_pred cceeccCCceEEEEEecC-----CcceeEEEEEecCCCCCCceeeecccccC--------cCcceeecccCCCCCCCCCc
Q 013827 78 DMTINPNDAVIVCARNED-----DVSHLEVYILEESDGGDPNLYVHHHIIIP--------AFPLCMAWLDCPLKDREKGN 144 (436)
Q Consensus 78 ~~~~sp~~~~l~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~s~~~~ 144 (436)
.+.|+||++.+.++.... +...-.|.+++....+ .. ....++ ..|..+.+ +|||+
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~---vv--~~I~v~~~~~~~~g~~P~~ia~-------SpDGk 136 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL---PI--ADIELPDAPRFSVGPRVHIIGN-------CASSA 136 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC---EE--EEEEETTSCSCCBSCCTTSEEE-------CTTSS
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC---EE--EEEECCCccccccCCCcceEEE-------cCCCC
Confidence 699999999999886310 0011278889888752 21 111121 12333433 99999
Q ss_pred EEEEeeC--CCcEEE--EeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEe
Q 013827 145 FMAVGSM--EPAIEI--WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 220 (436)
Q Consensus 145 ~l~~g~~--dg~i~v--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 220 (436)
+|+++.. +..|.+ +|..+ +..+. . + + +..+.|++...+++.+
T Consensus 137 ~lyVan~~~~~~v~V~~iD~~t---v~~i~-------------------------v-~--~---~~~~~p~g~~~~~~~~ 182 (368)
T 1mda_H 137 CLLFFLFGSSAAAGLSVPGASD---DQLTK-------------------------S-A--S---CFHIHPGAAATHYLGS 182 (368)
T ss_dssp CEEEEECSSSCEEEEEETTTEE---EEEEE-------------------------C-S--S---CCCCEEEETTEEECCC
T ss_pred EEEEEccCCCCeEEEEEEchhh---ceEEE-------------------------C-C--C---ceEEccCCCeEEEEEc
Confidence 9999875 467888 88864 11110 0 0 0 1223455556677777
Q ss_pred CCCcEEEEeCCC-----CeEEE----EEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc-ceE-------
Q 013827 221 ADKQVKIWDVAA-----GKCNL----TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKW------- 283 (436)
Q Consensus 221 ~dg~v~vwd~~~-----~~~~~----~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~------- 283 (436)
.||.+.+.|+++ ++... .+.....+. . .+++ ..++..+. +.+.+.|+....... ...
T Consensus 183 ~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~-~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~ 256 (368)
T 1mda_H 183 CPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYP-GMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGR 256 (368)
T ss_dssp CTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTT-TEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHH
T ss_pred CCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccC-CEEEEEcC-CEEEEEECCCCcceEEEEEEeccccc
Confidence 888888888876 43321 111122333 3 5555 44555555 999999986532110 000
Q ss_pred ----eeeCCeeEEEeCCCCCcEEEEEe---C-----CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCC
Q 013827 284 ----AVAADVESLAWDPHAEHSFVVSL---E-----DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP 351 (436)
Q Consensus 284 ----~~~~~i~~~~~~~~~~~~~~~~~---~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 351 (436)
........++++|++..++++.. . ++.+.++|+.+. +.+..+.... ....++|+|++.
T Consensus 257 ~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~---------~vv~~i~vg~-~p~gi~~s~Dg~ 326 (368)
T 1mda_H 257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG---------QTSGPISNGH-DSDAIIAAQDGA 326 (368)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC---------CEEECCEEEE-EECEEEECCSSS
T ss_pred cccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC---------eEEEEEECCC-CcceEEECCCCC
Confidence 11222233689999866555544 2 235669999987 3344443332 578999999995
Q ss_pred CEEEEEe-CCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcC
Q 013827 352 NLLATGS-TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 393 (436)
Q Consensus 352 ~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 393 (436)
.++++.. .++.|.++|+.+.+ .+..+.... ....+++.+
T Consensus 327 ~l~va~~~~~~~VsVID~~t~k--vv~~I~vg~-~P~~i~~~~ 366 (368)
T 1mda_H 327 SDNYANSAGTEVLDIYDAASDQ--DQSSVELDK-GPESLSVQN 366 (368)
T ss_dssp CEEEEEETTTTEEEEEESSSCE--EEEECCCCS-CCCEEECCC
T ss_pred EEEEEccCCCCeEEEEECCCCc--EEEEEECCC-CCCEEEeec
Confidence 5777877 69999999999987 444444333 344555543
No 235
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.98 E-value=8.3e-07 Score=81.29 Aligned_cols=210 Identities=5% Similarity=0.041 Sum_probs=137.5
Q ss_pred cceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc
Q 013827 201 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG 280 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 280 (436)
..+..++|.+.+..++.+-...+.|..+++........+.........+++.+.++.++++-...+.|.+.++.......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 45789999986555566666678899999887654444433334557788988664666666677888888887544322
Q ss_pred ceEeeeCCeeEEEeCCCCCcEEEEEeCC-CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeC
Q 013827 281 FKWAVAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 359 (436)
Q Consensus 281 ~~~~~~~~i~~~~~~~~~~~~~~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 359 (436)
.....-.....++++|.+..++++-... +.|..+++... .........-...+.|+++|++..+.++-+.
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~---------~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~ 266 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS---------GRRIIADTHLFWPNGLTIDYAGRRMYWVDAK 266 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---------SCEEEECSSCSCEEEEEEEGGGTEEEEEETT
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC---------CcEEEEECCCCCeeeEEEeCCCCEEEEEECC
Confidence 2222235678999999776666666555 78888887653 1122222334457899999877455555556
Q ss_pred CCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccc
Q 013827 360 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 423 (436)
Q Consensus 360 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (436)
.+.|..+|+.......+ ..........+++. .+ .++.+-...+.|..++..+++.+....
T Consensus 267 ~~~I~~~d~dG~~~~~~--~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 267 HHVIERANLDGSHRKAV--ISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TTEEEEECTTSCSCEEE--ECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEeCCCCeeEEE--EECCCCCceEEEEE-CC-EEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 78899999876543222 22234457788883 33 367777778899999976776655443
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.96 E-value=2.6e-08 Score=90.58 Aligned_cols=197 Identities=14% Similarity=0.102 Sum_probs=130.4
Q ss_pred EEec--CCCCcEEEEEeCCCcEEEEeCCCC----eEEEEEc------ccC-CCeEEEEEcCCCCCEEEEEECC------C
Q 013827 206 LAWN--KEFRNILASASADKQVKIWDVAAG----KCNLTLE------HHT-DKVQAVAWNHHSPQILLSGSFD------R 266 (436)
Q Consensus 206 ~~~~--~~~~~~l~s~~~dg~v~vwd~~~~----~~~~~~~------~~~-~~v~~~~~~~~~~~~l~s~~~d------~ 266 (436)
..++ ++.+.+++++..++.|.++|+.+. +..+.+. ... .....+...|+| +++++..+ +
T Consensus 87 ~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g 164 (462)
T 2ece_A 87 PNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPG 164 (462)
T ss_dssp TTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCC
T ss_pred cccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCC
Confidence 3446 777777788888999999999755 6666663 111 245667888998 56666555 7
Q ss_pred cEEEEecCCCCCccceEeee---CCeeEEEeCCCCCcEEEEEe-------------------CCCcEEEEeCCCCCCCCC
Q 013827 267 SVVMKDARISTHSGFKWAVA---ADVESLAWDPHAEHSFVVSL-------------------EDGTIKGFDIRTAKSDPD 324 (436)
Q Consensus 267 ~i~~wd~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~-------------------~dg~i~i~d~~~~~~~~~ 324 (436)
.|.++|..+.+......... .-...+.|+|++ +.+++.. ...+|.+||+.+.
T Consensus 165 ~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~----- 238 (462)
T 2ece_A 165 GILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR----- 238 (462)
T ss_dssp EEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-----
T ss_pred eEEEEECCCCeEEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-----
Confidence 89999999887665332111 224458889987 4666663 3789999999876
Q ss_pred CCCCcccEEEecc-C-CCeEEEEe--cCCCCCEEEEEe------CCCcEEEEECCCCCceeEEe--eCCC----------
Q 013827 325 STSQQSSFTLHAH-D-KAVCTISY--NPLVPNLLATGS------TDKMVKLWDLSNNQPSCIAS--RNPK---------- 382 (436)
Q Consensus 325 ~~~~~~~~~~~~~-~-~~v~~~~~--~p~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~--~~~~---------- 382 (436)
+.+.++... . .....+.| +|++ .++++++ .+++|.+|....++...... ....
T Consensus 239 ----k~~~tI~vg~~g~~P~~i~f~~~Pdg-~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~ 313 (462)
T 2ece_A 239 ----KRIHSLTLGEENRMALELRPLHDPTK-LMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEIL 313 (462)
T ss_dssp ----EEEEEEESCTTEEEEEEEEECSSTTC-CEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGG
T ss_pred ----cEeeEEecCCCCCccceeEeeECCCC-CEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccc
Confidence 444455432 1 23445555 9998 5555554 56788877665543222211 1110
Q ss_pred ------CCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 383 ------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 383 ------~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
......+.+++||++++++.-..+.|.+||+..
T Consensus 314 ~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 314 KPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp GGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred cccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 134678999999999888887889999999863
No 237
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.94 E-value=1.7e-08 Score=91.21 Aligned_cols=212 Identities=10% Similarity=0.059 Sum_probs=128.0
Q ss_pred cceeEEEecCCCCcEEEEEe--CCCcEEEEeCCCCeEEEEEc-------ccCCCeEEEEEcCCCCCEEEEEEC-----CC
Q 013827 201 DSVLGLAWNKEFRNILASAS--ADKQVKIWDVAAGKCNLTLE-------HHTDKVQAVAWNHHSPQILLSGSF-----DR 266 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~-----d~ 266 (436)
..+..++++|+|+ ++++.. .++.++||.+.+++. ..+. .+-..+..+++++++ +++++-.. ++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCC
Confidence 5789999999974 777753 234355555545543 3221 244678999999998 66665443 57
Q ss_pred cEEEEecCCCCCccceEe------eeCCeeEEEeCCCCCcEEEEEe---CCCcEEEEeCCCCCCCCCCCC-----C-ccc
Q 013827 267 SVVMKDARISTHSGFKWA------VAADVESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTS-----Q-QSS 331 (436)
Q Consensus 267 ~i~~wd~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~---~dg~i~i~d~~~~~~~~~~~~-----~-~~~ 331 (436)
.|.+||+.+++....... ....+..+++++++...+++.. .++.|.+||+.+++....... . ...
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 899999987764332211 1234689999986655566655 678999999876532110000 0 000
Q ss_pred EEEec--------------cCCCeEEEEecCCCCCEEEEEeCCC-cEEEEECC---CCCc-----eeEEeeCCCCCcEEE
Q 013827 332 FTLHA--------------HDKAVCTISYNPLVPNLLATGSTDK-MVKLWDLS---NNQP-----SCIASRNPKAGAVFS 388 (436)
Q Consensus 332 ~~~~~--------------~~~~v~~~~~~p~~~~~l~~~~~d~-~i~iwd~~---~~~~-----~~~~~~~~~~~~v~~ 388 (436)
....+ ....+..++|+|++ +.|+.+..++ .+..++.. .... .......++.+....
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg 252 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG 252 (343)
T ss_dssp CEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred eeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence 00000 01246889999998 7777777665 45444432 1110 000011122334567
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 389 VAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 389 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
++++++|. ++++...++.|.+||..+++
T Consensus 253 ia~d~~G~-l~va~~~~~~V~~~d~~~G~ 280 (343)
T 2qe8_A 253 ISIDKDHN-IYVGDLAHSAIGVITSADRA 280 (343)
T ss_dssp EEECTTCC-EEEEEGGGTEEEEEETTTTE
T ss_pred EEECCCCC-EEEEccCCCeEEEEECCCCC
Confidence 99999998 68888888999999985554
No 238
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.93 E-value=3.8e-06 Score=77.23 Aligned_cols=214 Identities=12% Similarity=0.052 Sum_probs=137.8
Q ss_pred cccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC----eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC
Q 013827 199 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 274 (436)
Q Consensus 199 h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 274 (436)
....+.+++|++.+..++.+-...+.|+.+++... .....+.........+++.+.+..++++-...+.|.+.++.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 34568899999875545555556788999998752 23333333445678899998554666776778899999987
Q ss_pred CCCCccceEeeeCCeeEEEeCCCCCcEEEEEeC-CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCE
Q 013827 275 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL 353 (436)
Q Consensus 275 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 353 (436)
.................++++|.+..++++-.. .+.|...++... .........-...+.|+++|++..+
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~---------~~~~~~~~~l~~P~glavd~~~~~l 260 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---------DIYSLVTENIQWPNGITLDLLSGRL 260 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC---------SCEEEECSSCSCEEEEEEETTTTEE
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC---------ccEEEEECCCCceEEEEEEeCCCEE
Confidence 654333222233458899999976555555533 478888887654 2122223333567899999987444
Q ss_pred EEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccc
Q 013827 354 LATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 423 (436)
Q Consensus 354 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (436)
..+-...+.|..+|+.......+...........++++.. ..++.+-...+.|..+|..+++.+....
T Consensus 261 Y~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~--~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 261 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEET--TEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeC--CEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 4444557789999998765434433323334566777743 3467777778899999987776655443
No 239
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.93 E-value=3.1e-06 Score=76.35 Aligned_cols=208 Identities=5% Similarity=0.047 Sum_probs=136.7
Q ss_pred cceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc
Q 013827 201 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG 280 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 280 (436)
..+.+++|.+.+..++.+-...+.|..+++........+.........+++.+.++.++++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 34789999987555555556678899999887654444433334567899988664666776777899999987554332
Q ss_pred ceEeeeCCeeEEEeCCCCCcEEEEEeCC-CcEEEEeCCCCCCCCCCCCCcccEEE-eccCCCeEEEEecCCCCCEEEEEe
Q 013827 281 FKWAVAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGS 358 (436)
Q Consensus 281 ~~~~~~~~i~~~~~~~~~~~~~~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~ 358 (436)
.....-.....++++|.+..++++-... +.|..+++.... ...+ ...-...+.++++|++..+.++-.
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~----------~~~~~~~~~~~PnGla~d~~~~~lY~aD~ 222 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG----------RRIIADTHLFWPNGLTIDYAGRRMYWVDA 222 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS----------CEESCCSSCSCEEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC----------cEEEEECCCCCcceEEEeCCCCEEEEEEC
Confidence 2212234578999999776667766666 788888876431 1121 122345789999987745555555
Q ss_pred CCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 359 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 359 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
..+.|..+|+.......+ ..........+++. .+ .++++-...+.|..++..+++.+...
T Consensus 223 ~~~~I~~~~~dG~~~~~~--~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 223 KHHVIERANLDGSHRKAV--ISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp TTTEEEEEETTSCSCEEE--ECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCEEEEEeCCCCceEEE--EeCCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccCCCccEEe
Confidence 678899999876543222 22234457788883 33 36777777888999987666655443
No 240
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.92 E-value=2.3e-07 Score=79.24 Aligned_cols=190 Identities=8% Similarity=-0.022 Sum_probs=127.7
Q ss_pred CCCCcEEEEeeC--CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEE
Q 013827 140 REKGNFMAVGSM--EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 217 (436)
Q Consensus 140 s~~~~~l~~g~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 217 (436)
++++.++++.+. ++.|+++|+.+++....... ..+ .....+++.. ..+.+
T Consensus 29 ~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-------------------------~~~-~fgeGi~~~g--~~lyv 80 (266)
T 2iwa_A 29 AENDTLFESTGLYGRSSVRQVALQTGKVENIHKM-------------------------DDS-YFGEGLTLLN--EKLYQ 80 (266)
T ss_dssp CSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC-------------------------CTT-CCEEEEEEET--TEEEE
T ss_pred eCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec-------------------------CCC-cceEEEEEeC--CEEEE
Confidence 777766665543 58999999998776554321 111 1123455553 35666
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeee-----CCeeEE
Q 013827 218 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA-----ADVESL 292 (436)
Q Consensus 218 s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-----~~i~~~ 292 (436)
+.-.++.+.++|..+.+.+.++...... ...+++++..++ ++..++.|.++|..+.+......-.. ..++.+
T Consensus 81 ~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~-vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nel 157 (266)
T 2iwa_A 81 VVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILY-GSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNEL 157 (266)
T ss_dssp EETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEE-EECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEE-EECCCCeEEEEECCCCcEEEEEEECCCCcccccceeE
Confidence 6677899999999999999888532122 233555774444 55578999999998877654333111 236678
Q ss_pred EeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEecc-------------CCCeEEEEecCCCCCEEEEEeC
Q 013827 293 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-------------DKAVCTISYNPLVPNLLATGST 359 (436)
Q Consensus 293 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~~~~p~~~~~l~~~~~ 359 (436)
.|. ++ .+++....++.|.+.|..++ +.+..+... ....+.++|+|++..+++++..
T Consensus 158 e~~-dg-~lyvn~~~~~~V~vID~~tg---------~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~ 226 (266)
T 2iwa_A 158 EYI-NG-EVWANIWQTDCIARISAKDG---------TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL 226 (266)
T ss_dssp EEE-TT-EEEEEETTSSEEEEEETTTC---------CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred EEE-CC-EEEEecCCCCeEEEEECCCC---------cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC
Confidence 887 45 56666667899999999988 444444321 1356899999998678888888
Q ss_pred CCcEEEEECCCC
Q 013827 360 DKMVKLWDLSNN 371 (436)
Q Consensus 360 d~~i~iwd~~~~ 371 (436)
.+.+...++...
T Consensus 227 ~~~v~~i~l~~~ 238 (266)
T 2iwa_A 227 WPKLFEIKLHLV 238 (266)
T ss_dssp CSEEEEEEEEEC
T ss_pred CCeEEEEEEecc
Confidence 899988887654
No 241
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.91 E-value=1.7e-06 Score=79.07 Aligned_cols=228 Identities=11% Similarity=0.083 Sum_probs=137.6
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 221 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 221 (436)
++..+.+++.++.|..+|..+++..-.... ........... + ..++.++.
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~---------------------------~~~~~~~p~~~-~--~~v~v~~~ 151 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKV---------------------------AGEALSRPVVS-D--GLVLIHTS 151 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEEC---------------------------SSCCCSCCEEE-T--TEEEEECT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeC---------------------------CCceEcCCEEE-C--CEEEEEcC
Confidence 456788888899999999987765432111 00001111122 3 26778888
Q ss_pred CCcEEEEeCCCCeEEEEEcccCCCe-----EEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeC-C---eeE-
Q 013827 222 DKQVKIWDVAAGKCNLTLEHHTDKV-----QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA-D---VES- 291 (436)
Q Consensus 222 dg~v~vwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~---i~~- 291 (436)
++.|..+|..+++.+.......... ...... + ..++.+..++.+..+|..+++..-....... . +..
T Consensus 152 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 228 (376)
T 3q7m_A 152 NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRL 228 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC----------
T ss_pred CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccc
Confidence 9999999999998877765322111 111222 2 4677788899999999987765432211100 0 000
Q ss_pred --EEeCC--CCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 013827 292 --LAWDP--HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 367 (436)
Q Consensus 292 --~~~~~--~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd 367 (436)
+...| .+ ..+++++.++.+..+|..++ +.+.... ......+... + ..++.++.++.|..+|
T Consensus 229 ~~~~~~p~~~~-~~v~~~~~~g~l~~~d~~tG---------~~~w~~~--~~~~~~~~~~--~-~~l~~~~~~g~l~~~d 293 (376)
T 3q7m_A 229 SDVDTTPVVVN-GVVFALAYNGNLTALDLRSG---------QIMWKRE--LGSVNDFIVD--G-NRIYLVDQNDRVMALT 293 (376)
T ss_dssp -CCCCCCEEET-TEEEEECTTSCEEEEETTTC---------CEEEEEC--CCCEEEEEEE--T-TEEEEEETTCCEEEEE
T ss_pred cccCCCcEEEC-CEEEEEecCcEEEEEECCCC---------cEEeecc--CCCCCCceEE--C-CEEEEEcCCCeEEEEE
Confidence 00111 12 46777888999999999887 3333332 2234444443 3 6788888999999999
Q ss_pred CCCCCceeEEeeCC-CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 368 LSNNQPSCIASRNP-KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 368 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
..+++. ...... ....+...... +. .|+.++.+|.|..+|..+++.+.+.
T Consensus 294 ~~tG~~--~w~~~~~~~~~~~~~~~~--~~-~l~v~~~~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 294 IDGGVT--LWTQSDLLHRLLTSPVLY--NG-NLVVGDSEGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp TTTCCE--EEEECTTTTSCCCCCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCCCcE--EEeecccCCCcccCCEEE--CC-EEEEEeCCCeEEEEECCCCcEEEEE
Confidence 999884 333331 11122222232 33 3666888999999999999877543
No 242
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.89 E-value=1.1e-06 Score=78.37 Aligned_cols=252 Identities=9% Similarity=-0.024 Sum_probs=142.3
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecC-CCCcEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK-EFRNILAS 218 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s 218 (436)
+++++++.++..++.|..|+..+.... ............. . . .............+.++++.+ ++ .|+.
T Consensus 27 d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~---~-~---g~~~~~~~~~~~~p~gi~~~~~~g--~l~v 96 (322)
T 2fp8_A 27 DSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAF---C-E---NSTDAEKRPLCGRTYDISYNLQNN--QLYI 96 (322)
T ss_dssp CTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHH---H-T---TCCCGGGHHHHCCEEEEEEETTTT--EEEE
T ss_pred cCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccc---c-c---cccchhccccCCCCceEEEcCCCC--cEEE
Confidence 788998888888999999987643211 1100000000000 0 0 000000001123578899997 54 4555
Q ss_pred EeCCCcEEEEeCCCCeEEEEEc----c-cCCCeEEEEEcC-CCCCEEEEEEC-----------------CCcEEEEecCC
Q 013827 219 ASADKQVKIWDVAAGKCNLTLE----H-HTDKVQAVAWNH-HSPQILLSGSF-----------------DRSVVMKDARI 275 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~~~~~~----~-~~~~v~~~~~~~-~~~~~l~s~~~-----------------d~~i~~wd~~~ 275 (436)
+...+.|..+|..+++. ..+. + .......+++.+ +| .++++-.. ++.|..+|..+
T Consensus 97 ~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 55555688888776542 2221 1 123578899999 88 66665432 36788888765
Q ss_pred CCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEE
Q 013827 276 STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA 355 (436)
Q Consensus 276 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 355 (436)
..... ....-.....++++|++..++++-...+.|..|++..... .....+....+ ...+++.++| ++.+
T Consensus 175 ~~~~~-~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-------~~~~~~~~~~g-P~gi~~d~~G-~l~v 244 (322)
T 2fp8_A 175 KETTL-LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-------GTAEVLVKIPN-PGNIKRNADG-HFWV 244 (322)
T ss_dssp TEEEE-EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-------TCEEEEEECSS-EEEEEECTTS-CEEE
T ss_pred CEEEE-eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-------CccceEEeCCC-CCCeEECCCC-CEEE
Confidence 54322 2222345678999998854566667778999999875311 11111211223 7889999998 6655
Q ss_pred EEeC----------CCcEEEEECCCCCceeEEeeCC-C-CCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 356 TGST----------DKMVKLWDLSNNQPSCIASRNP-K-AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 356 ~~~~----------d~~i~iwd~~~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
+... .+.|..+|.. ++......... . ...+..+++ .++. ++++....+.|.++++...
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~-L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGL-LYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTE-EEEECSSCSEEEEEEC---
T ss_pred EecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCE-EEEeecCCCceEEEecccc
Confidence 5543 4668888875 44322222221 1 234666666 4555 6776667889999998643
No 243
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.87 E-value=6.4e-07 Score=88.46 Aligned_cols=184 Identities=12% Similarity=0.150 Sum_probs=115.3
Q ss_pred eEEEecCCCCcEEEEEeCCCc-------------------EEEEeCCCCeEEEEEcc--cC-------CCeEEEEEcCCC
Q 013827 204 LGLAWNKEFRNILASASADKQ-------------------VKIWDVAAGKCNLTLEH--HT-------DKVQAVAWNHHS 255 (436)
Q Consensus 204 ~~~~~~~~~~~~l~s~~~dg~-------------------v~vwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~ 255 (436)
..+++.|++ .+++.+..++. |..+|.++|+.+..++. |. .++.......+|
T Consensus 238 ~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G 316 (689)
T 1yiq_A 238 DSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDG 316 (689)
T ss_dssp SCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred cceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCC
Confidence 467888875 57888877763 99999999998887753 21 122222222244
Q ss_pred C--CEEEEEECCCcEEEEecCCCCCccceE--------eee-------------------------------CCeeEEEe
Q 013827 256 P--QILLSGSFDRSVVMKDARISTHSGFKW--------AVA-------------------------------ADVESLAW 294 (436)
Q Consensus 256 ~--~~l~s~~~d~~i~~wd~~~~~~~~~~~--------~~~-------------------------------~~i~~~~~ 294 (436)
. ..++.++.+|.++++|.++++.+.... ... ..-..+++
T Consensus 317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~ 396 (689)
T 1yiq_A 317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY 396 (689)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence 1 278889999999999999887642110 000 00112677
Q ss_pred CCCCCcEEEEEeC---------------------------------------------CCcEEEEeCCCCCCCCCCCCCc
Q 013827 295 DPHAEHSFVVSLE---------------------------------------------DGTIKGFDIRTAKSDPDSTSQQ 329 (436)
Q Consensus 295 ~~~~~~~~~~~~~---------------------------------------------dg~i~i~d~~~~~~~~~~~~~~ 329 (436)
+|+.. ++++... +|.|..||+.++ +
T Consensus 397 dp~~~-~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG---------~ 466 (689)
T 1yiq_A 397 NPDTG-LVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ---------Q 466 (689)
T ss_dssp ETTTT-EEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT---------E
T ss_pred CCCCC-EEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC---------C
Confidence 77664 5554421 377899999887 4
Q ss_pred ccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCC-CCcEEEEEEcCCCCcEEEEE
Q 013827 330 SSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK-AGAVFSVAFSEDSPFVLAIG 402 (436)
Q Consensus 330 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~ 402 (436)
.+.....+. +.....+...+ .++++++.|+.++.||.++++. +..+... .....-+.|..+|+..+++.
T Consensus 467 ~~W~~~~~~-~~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~~--lw~~~~~~~~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 467 AAWEVPYVT-IFNGGTLSTAG-NLVFEGSADGRVIAYAADTGEK--LWEQPAASGVMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp EEEEEEESS-SCCCCEEEETT-TEEEEECTTSEEEEEETTTCCE--EEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred eEeEccCCC-CccCccceECC-CEEEEECCCCcEEEEECCCCcc--ceeeeCCCCcccCceEEEECCEEEEEEE
Confidence 455554433 23333445555 7899999999999999999984 3333322 11223366778887545544
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.87 E-value=1.4e-07 Score=84.48 Aligned_cols=220 Identities=13% Similarity=0.057 Sum_probs=139.0
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCC
Q 013827 143 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 222 (436)
Q Consensus 143 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 222 (436)
+..|..++.++.|..+|.. ++.... ...+...+.++...+++ .+..++.+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~---------------------------~~~~~~~~~~~~~~~~g--~l~vgt~~ 156 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWR---------------------------FKTKKAIYATPIVSEDG--TIYVGSND 156 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEE---------------------------EECSSCCCSCCEECTTS--CEEEECTT
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEE---------------------------EcCCCceeeeeEEcCCC--EEEEEcCC
Confidence 4557778888999999876 332211 11123345566667665 36667888
Q ss_pred CcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEE
Q 013827 223 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF 302 (436)
Q Consensus 223 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 302 (436)
+.|..+|.. ++....+......+.++...+++ .++ .++ +.|..+| .++............+.++...+++ .+
T Consensus 157 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g-~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g--~l 228 (330)
T 3hxj_A 157 NYLYAINPD-GTEKWRFKTNDAITSAASIGKDG-TIY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDG--TI 228 (330)
T ss_dssp SEEEEECTT-SCEEEEEECSSCCCSCCEECTTC-CEE-EES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTS--CE
T ss_pred CEEEEECCC-CCEeEEEecCCCceeeeEEcCCC-EEE-EEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCC--eE
Confidence 999999998 77776666555667777887777 544 444 8899999 5444332222233457777888765 46
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCC
Q 013827 303 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK 382 (436)
Q Consensus 303 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 382 (436)
.+++.++.+..+|.. + .....+......+..+.+.+++ .|..++.++.|..+|. +++. .......
T Consensus 229 ~v~t~~~gl~~~~~~-g---------~~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~ggl~~~d~-~g~~--~~~~~~~ 293 (330)
T 3hxj_A 229 YVTSLDGHLYAINPD-G---------TEKWRFKTGKRIESSPVIGNTD--TIYFGSYDGHLYAINP-DGTE--KWNFETG 293 (330)
T ss_dssp EEEETTTEEEEECTT-S---------CEEEEEECSSCCCSCCEECTTS--CEEEECTTCEEEEECT-TSCE--EEEEECS
T ss_pred EEEcCCCeEEEECCC-C---------CEeEEeeCCCCccccceEcCCC--eEEEecCCCCEEEECC-CCcE--EEEEEcC
Confidence 667778888888743 2 2233444333334455555544 5677888889999996 5553 2333333
Q ss_pred CCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 383 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 383 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
...+.++...++|. |..++.+|.+++......+
T Consensus 294 ~~~~~~~~~d~~g~--l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 294 SWIIATPVIDENGT--IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp SCCCSCCEECTTCC--EEEECTTSCEEEEEC----
T ss_pred CccccceEEcCCCE--EEEEcCCCeEEEEeccccc
Confidence 44567778888887 4458999999988766543
No 245
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.87 E-value=3.3e-06 Score=77.14 Aligned_cols=223 Identities=7% Similarity=0.038 Sum_probs=130.2
Q ss_pred CcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCC
Q 013827 143 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 222 (436)
Q Consensus 143 ~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 222 (436)
+..+++++.++.|..+|..+++..-..... ...........+ ... + ..++.++.+
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~------------------~~~~~~~~~~~~----~~~-~--~~v~~g~~~ 197 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADGAVKWTVNLD------------------MPSLSLRGESAP----TTA-F--GAAVVGGDN 197 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECC------------------C-----CCCCCC----EEE-T--TEEEECCTT
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEeCC------------------CCceeecCCCCc----EEE-C--CEEEEEcCC
Confidence 457788888999999999877654322110 000000011111 122 2 267778889
Q ss_pred CcEEEEeCCCCeEEEEEcccCCC----eEE---EEEcC--CCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEE
Q 013827 223 KQVKIWDVAAGKCNLTLEHHTDK----VQA---VAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA 293 (436)
Q Consensus 223 g~v~vwd~~~~~~~~~~~~~~~~----v~~---~~~~~--~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~ 293 (436)
+.+..+|..+++.+......... +.. +.-.| .+ ..++.++.++.+..+|.++++..-.. . ......+.
T Consensus 198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~v~~~~~~g~l~~~d~~tG~~~w~~-~-~~~~~~~~ 274 (376)
T 3q7m_A 198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN-GVVFALAYNGNLTALDLRSGQIMWKR-E-LGSVNDFI 274 (376)
T ss_dssp TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEET-TEEEEECTTSCEEEEETTTCCEEEEE-C-CCCEEEEE
T ss_pred CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEEC-CEEEEEecCcEEEEEECCCCcEEeec-c-CCCCCCce
Confidence 99999999999887666422100 000 00111 12 46777888999999999887654311 1 12233444
Q ss_pred eCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec-cCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 013827 294 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 294 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
.. + ..+++++.++.+..+|..++ +....... ....+...... + ..|+.++.+|.+.++|..+++
T Consensus 275 ~~--~-~~l~~~~~~g~l~~~d~~tG---------~~~w~~~~~~~~~~~~~~~~--~-~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 275 VD--G-NRIYLVDQNDRVMALTIDGG---------VTLWTQSDLLHRLLTSPVLY--N-GNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp EE--T-TEEEEEETTCCEEEEETTTC---------CEEEEECTTTTSCCCCCEEE--T-TEEEEECTTSEEEEEETTTCC
T ss_pred EE--C-CEEEEEcCCCeEEEEECCCC---------cEEEeecccCCCcccCCEEE--C-CEEEEEeCCCeEEEEECCCCc
Confidence 43 3 46778888999999999887 33333331 12222233332 3 678889999999999999988
Q ss_pred ceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 013827 373 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 373 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 412 (436)
....... ....+.......++. |+.++.+|.|+.|+
T Consensus 340 ~~~~~~~--~~~~~~~~~~~~~~~--l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 340 FVAQQKV--DSSGFQTEPVAADGK--LLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEEEC--CTTCBCSCCEEETTE--EEEEBTTSCEEEEE
T ss_pred EEEEEec--CCCcceeCCEEECCE--EEEEeCCCEEEEEe
Confidence 4333332 122222211112443 66688999999987
No 246
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.82 E-value=1.2e-06 Score=73.80 Aligned_cols=184 Identities=10% Similarity=0.038 Sum_probs=120.5
Q ss_pred ceeEEEecCCCCcEEEEEeCCC--cEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc
Q 013827 202 SVLGLAWNKEFRNILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS 279 (436)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 279 (436)
-...+.|+ ++ .++.+.+.+| .|+++|+++++.+..+... .........+++..+.+..-.++.+.++|..+.+..
T Consensus 44 ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 44 FTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp EEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred ccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence 34888998 54 5777777776 8999999999998888643 233332233344355666667899999999988876
Q ss_pred cceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEecc--C---CCeEEEEecCCCCCEE
Q 013827 280 GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--D---KAVCTISYNPLVPNLL 354 (436)
Q Consensus 280 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~---~~v~~~~~~p~~~~~l 354 (436)
..... ...-..++ +++.. ++.+..++.|.++|..+. +.+..+... . ..++.+.|. +| .+.
T Consensus 121 ~ti~~-~~eG~glt--~dg~~-L~~SdGs~~i~~iDp~T~---------~v~~~I~V~~~g~~~~~lNELe~~-~G-~ly 185 (262)
T 3nol_A 121 RSFNY-DGEGWGLT--HNDQY-LIMSDGTPVLRFLDPESL---------TPVRTITVTAHGEELPELNELEWV-DG-EIF 185 (262)
T ss_dssp EEEEC-SSCCCCEE--ECSSC-EEECCSSSEEEEECTTTC---------SEEEEEECEETTEECCCEEEEEEE-TT-EEE
T ss_pred EEEEC-CCCceEEe--cCCCE-EEEECCCCeEEEEcCCCC---------eEEEEEEeccCCccccccceeEEE-CC-EEE
Confidence 53332 22223444 44544 444455788999999887 334443321 1 334567776 45 555
Q ss_pred EEEeCCCcEEEEECCCCCceeEEeeCC----------CCCcEEEEEEcCCCCcEEEEEe
Q 013827 355 ATGSTDKMVKLWDLSNNQPSCIASRNP----------KAGAVFSVAFSEDSPFVLAIGG 403 (436)
Q Consensus 355 ~~~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~l~s~~ 403 (436)
+..-.++.|.+.|..+++......+.+ .....+.|+|+|+++.++++|-
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 555468899999999998655544431 1235789999999886666653
No 247
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.82 E-value=1.3e-06 Score=86.08 Aligned_cols=201 Identities=10% Similarity=0.140 Sum_probs=126.2
Q ss_pred eeEEEecCCCCcEEEEEeCCC-------------------cEEEEeCCCCeEEEEEcc--cC-------CCeEEEEEcCC
Q 013827 203 VLGLAWNKEFRNILASASADK-------------------QVKIWDVAAGKCNLTLEH--HT-------DKVQAVAWNHH 254 (436)
Q Consensus 203 v~~~~~~~~~~~~l~s~~~dg-------------------~v~vwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~ 254 (436)
...+++.|++ .+++.+..++ +|..+|..+++.+..++. |. ....-+....+
T Consensus 245 w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~d 323 (677)
T 1kb0_A 245 WDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIA 323 (677)
T ss_dssp CSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEET
T ss_pred ccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccC
Confidence 3467888885 4777776653 599999999998877653 21 11222233334
Q ss_pred CC--CEEEEEECCCcEEEEecCCCCCccceEeee----------CC-e------------------------eEEEeCCC
Q 013827 255 SP--QILLSGSFDRSVVMKDARISTHSGFKWAVA----------AD-V------------------------ESLAWDPH 297 (436)
Q Consensus 255 ~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~----------~~-i------------------------~~~~~~~~ 297 (436)
|. ..++.++.+|.++++|.++++.+....... +. + ..++++|+
T Consensus 324 G~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~ 403 (677)
T 1kb0_A 324 GKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ 403 (677)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT
T ss_pred CcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC
Confidence 42 468889999999999999887643221000 00 0 14677887
Q ss_pred CCcEEEEEeC-------------------------------------------CCcEEEEeCCCCCCCCCCCCCcccEEE
Q 013827 298 AEHSFVVSLE-------------------------------------------DGTIKGFDIRTAKSDPDSTSQQSSFTL 334 (436)
Q Consensus 298 ~~~~~~~~~~-------------------------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~ 334 (436)
.. ++++... .|.|..||+.++ +.+...
T Consensus 404 ~~-~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG---------~~~W~~ 473 (677)
T 1kb0_A 404 TG-LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ---------KAAWSV 473 (677)
T ss_dssp TT-EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT---------EEEEEE
T ss_pred CC-EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC---------cEEeec
Confidence 64 5555432 267999999887 444444
Q ss_pred eccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeC----------
Q 013827 335 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS---------- 404 (436)
Q Consensus 335 ~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---------- 404 (436)
. +..++....+...+ .++++++.|+.+++||.++++........ +.....-+.|..+|+.+++..+.
T Consensus 474 ~-~~~~~~~g~~~~~g-~~v~~g~~dg~l~a~D~~tG~~lw~~~~~-~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~ 550 (677)
T 1kb0_A 474 E-HVSPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGEKLWEAPTG-TGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAAR 550 (677)
T ss_dssp E-ESSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECS-SCCCSCCEEEEETTEEEEEEEECCCHHHHHHCC
T ss_pred C-CCCCCcCcceEeCC-CEEEEECCCCcEEEEECCCCceeeeeeCC-CCcccCCEEEEeCCEEEEEEeccCCcccccccc
Confidence 4 33344445556666 68888999999999999999853333322 22222345667888754554333
Q ss_pred ------CCcEEEEeCCCCc
Q 013827 405 ------KGKLEIWDTLSDA 417 (436)
Q Consensus 405 ------dg~i~iwd~~~~~ 417 (436)
.+.+..|.+....
T Consensus 551 ~~~~~~~~~l~~f~l~~~a 569 (677)
T 1kb0_A 551 ATERQGPGTVYTFVVGGKA 569 (677)
T ss_dssp SCSCCCCCEEEEEEETCBC
T ss_pred ccccCCCCeEEEEeccccc
Confidence 4678888887433
No 248
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.82 E-value=3.9e-06 Score=74.28 Aligned_cols=230 Identities=15% Similarity=0.104 Sum_probs=135.9
Q ss_pred cCcceeecccCCCCCCCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCccccee
Q 013827 125 AFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL 204 (436)
Q Consensus 125 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 204 (436)
..+..++| +++++++++-..++.|..||.+.. . ... . .....+.
T Consensus 32 ~~pegia~-------~~~g~lyv~d~~~~~I~~~d~~g~-~-~~~--------------------------~-~~~~~p~ 75 (306)
T 2p4o_A 32 TFLENLAS-------APDGTIFVTNHEVGEIVSITPDGN-Q-QIH--------------------------A-TVEGKVS 75 (306)
T ss_dssp CCEEEEEE-------CTTSCEEEEETTTTEEEEECTTCC-E-EEE--------------------------E-ECSSEEE
T ss_pred CCcceEEE-------CCCCCEEEEeCCCCeEEEECCCCc-e-EEE--------------------------E-eCCCCce
Confidence 34455666 788997777777899999987531 1 100 0 1123578
Q ss_pred EEEecCCCCcEEEEEeC-CC-cEEEEeCCCCeEEEEEcc-cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc-
Q 013827 205 GLAWNKEFRNILASASA-DK-QVKIWDVAAGKCNLTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG- 280 (436)
Q Consensus 205 ~~~~~~~~~~~l~s~~~-dg-~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~- 280 (436)
.+++.++|. ++++... ++ .|..+|..+++....... .......++..+.+ ..+++-..++.|..+|........
T Consensus 76 gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~ 153 (306)
T 2p4o_A 76 GLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIW 153 (306)
T ss_dssp EEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eEEEcCCCc-EEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEE
Confidence 999999975 5554433 22 477777777765433221 12233455555544 445554468888888876431100
Q ss_pred ---------ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCC
Q 013827 281 ---------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP 351 (436)
Q Consensus 281 ---------~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 351 (436)
.....-.....+ ++++..++++-...+.|..|++..... ......+.. ......+++.++|
T Consensus 154 ~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~------~~~~~~~~~-~~~P~gi~vd~dG- 223 (306)
T 2p4o_A 154 LEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDK------PGEPEIFVE-QTNIDDFAFDVEG- 223 (306)
T ss_dssp EECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSC------BCCCEEEEE-SCCCSSEEEBTTC-
T ss_pred EECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCC------CCccEEEec-cCCCCCeEECCCC-
Confidence 000011234445 677766777777889999999875210 011112211 1345678999998
Q ss_pred CEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEc---CCCCcEEEEEe
Q 013827 352 NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS---EDSPFVLAIGG 403 (436)
Q Consensus 352 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~s~~ 403 (436)
+++++....+.|.++|.. ++...+..........++++|. |++..++++..
T Consensus 224 ~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 224 NLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp CEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred CEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 777777778899999975 4432232333333468999998 88876666554
No 249
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.81 E-value=8.2e-07 Score=74.83 Aligned_cols=181 Identities=8% Similarity=-0.017 Sum_probs=122.4
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEE--EEEcCCCCCEEEEEECCCcEEEEecCCCCCc
Q 013827 202 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQA--VAWNHHSPQILLSGSFDRSVVMKDARISTHS 279 (436)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 279 (436)
-...+.|+. ..++.+.+.+|.|+++|+++++.+..+ - ...... +++ ++..+++..-.++.+.++|..+.+..
T Consensus 56 ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 56 FTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEE
T ss_pred ccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEE
Confidence 347888874 368888899999999999999988777 2 233333 554 44466777778999999999988776
Q ss_pred cceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec--cC---CCeEEEEecCCCCCEE
Q 013827 280 GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HD---KAVCTISYNPLVPNLL 354 (436)
Q Consensus 280 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~---~~v~~~~~~p~~~~~l 354 (436)
..+.. ...-..++ +++. .++.+..++.|.++|..+. +.+..+.. +. ..++.+.|. +| .+.
T Consensus 130 ~ti~~-~~eGwGLt--~Dg~-~L~vSdGs~~l~~iDp~T~---------~v~~~I~V~~~g~~v~~lNeLe~~-dG-~ly 194 (268)
T 3nok_A 130 RTTRY-SGEGWGLC--YWNG-KLVRSDGGTMLTFHEPDGF---------ALVGAVQVKLRGQPVELINELECA-NG-VIY 194 (268)
T ss_dssp EEEEC-SSCCCCEE--EETT-EEEEECSSSEEEEECTTTC---------CEEEEEECEETTEECCCEEEEEEE-TT-EEE
T ss_pred EEEeC-CCceeEEe--cCCC-EEEEECCCCEEEEEcCCCC---------eEEEEEEeCCCCcccccccccEEe-CC-EEE
Confidence 53332 23334444 3454 5555567899999999887 33444332 22 245667777 45 555
Q ss_pred EEEeCCCcEEEEECCCCCceeEEeeCC-----------CCCcEEEEEEcCCCCcEEEEEe
Q 013827 355 ATGSTDKMVKLWDLSNNQPSCIASRNP-----------KAGAVFSVAFSEDSPFVLAIGG 403 (436)
Q Consensus 355 ~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~l~s~~ 403 (436)
+..-.++.|.+.|..+++......+.+ .....+.|+|+|++..+++||-
T Consensus 195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 195 ANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 555467899999999998544444321 1246799999998876777663
No 250
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.79 E-value=1.7e-07 Score=83.90 Aligned_cols=180 Identities=10% Similarity=0.006 Sum_probs=118.0
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeeeCCeeEEEe
Q 013827 215 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW 294 (436)
Q Consensus 215 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~ 294 (436)
.+..++.++.|..+|.. ++...........+.++...+++ . +..++.++.|..+|.. ++...........+.++..
T Consensus 109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~ 184 (330)
T 3hxj_A 109 ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI 184 (330)
T ss_dssp EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence 67778888999999988 77666665555556677777776 4 6667888999999988 4433322222344666677
Q ss_pred CCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCce
Q 013827 295 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS 374 (436)
Q Consensus 295 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~ 374 (436)
.+++ . +.+++ +.|..+| .++ ............+.++...+++ .|..++.++.+..+|. +++.
T Consensus 185 d~~g-~-l~v~t--~~l~~~d-~~g---------~~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~-~g~~- 246 (330)
T 3hxj_A 185 GKDG-T-IYFGS--DKVYAIN-PDG---------TEKWNFYAGYWTVTRPAISEDG--TIYVTSLDGHLYAINP-DGTE- 246 (330)
T ss_dssp CTTC-C-EEEES--SSEEEEC-TTS---------CEEEEECCSSCCCSCCEECTTS--CEEEEETTTEEEEECT-TSCE-
T ss_pred cCCC-E-EEEEe--CEEEEEC-CCC---------cEEEEEccCCcceeceEECCCC--eEEEEcCCCeEEEECC-CCCE-
Confidence 6655 3 55555 8899999 554 3344444445667788888765 4556777888888875 3432
Q ss_pred eEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccc
Q 013827 375 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 420 (436)
Q Consensus 375 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (436)
..........+..+...+++. |..++.+|.|..+|. +++.+.
T Consensus 247 -~~~~~~~~~~~~~~~~~~~g~--l~v~t~~ggl~~~d~-~g~~~~ 288 (330)
T 3hxj_A 247 -KWRFKTGKRIESSPVIGNTDT--IYFGSYDGHLYAINP-DGTEKW 288 (330)
T ss_dssp -EEEEECSSCCCSCCEECTTSC--EEEECTTCEEEEECT-TSCEEE
T ss_pred -eEEeeCCCCccccceEcCCCe--EEEecCCCCEEEECC-CCcEEE
Confidence 233333333344566666775 555888888999996 555543
No 251
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.77 E-value=1.3e-05 Score=71.04 Aligned_cols=209 Identities=9% Similarity=0.079 Sum_probs=134.4
Q ss_pred cceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeE-EEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc
Q 013827 201 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS 279 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 279 (436)
..+.+++|.+.+..++.+-...+.|..+++..+.. ...+...-.....+++.+.++.++++-...+.|.++++......
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 45678999986545666666678899999876532 12222223456788998766466666667789999998764433
Q ss_pred cceEeeeCCeeEEEeCCCCCcEEEEEe-CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEe
Q 013827 280 GFKWAVAADVESLAWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS 358 (436)
Q Consensus 280 ~~~~~~~~~i~~~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 358 (436)
............++++|.+..++++-. ..+.|..+++... .........-...+.++++|++..+..+-+
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~---------~~~~~~~~~l~~Pnglavd~~~~~lY~aD~ 185 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS---------SRFIIINSEIYWPNGLTLDYEEQKLYWADA 185 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC---------SCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC---------CeEEEEECCCCCccEEEEeccCCEEEEEEC
Confidence 222233456789999987655555542 3577888887643 111122223345689999997745555555
Q ss_pred CCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 359 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 359 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
..+.|..+|+.......+. .........+++..+ .++.+-...+.|..++..+++.+...
T Consensus 186 ~~~~I~~~d~dG~~~~~~~--~~~~~~P~glav~~~--~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 186 KLNFIHKSNLDGTNRQAVV--KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp TTTEEEEEETTSCSCEEEE--CSCCSCEEEEEEETT--EEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCEEEEEcCCCCceEEEe--cCCCCCceEEEEeCC--EEEEEecCCCeEEEEECCCCCceEEE
Confidence 6788999999765432222 223445678888643 36777777889999999877765444
No 252
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.76 E-value=4.2e-06 Score=69.90 Aligned_cols=184 Identities=13% Similarity=0.076 Sum_probs=120.7
Q ss_pred cceeEEEecCCCCcEEEEEeCCC--cEEEEeCCCCeEEEEEcccCCC-eEEEEEcCCCCCEEEEEECCCcEEEEecCCCC
Q 013827 201 DSVLGLAWNKEFRNILASASADK--QVKIWDVAAGKCNLTLEHHTDK-VQAVAWNHHSPQILLSGSFDRSVVMKDARIST 277 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 277 (436)
.-...+.|+++ .++.+.+.+| .|+.+|+++++.+..+...... -..+... +..+++..-.++.+.++|..+.+
T Consensus 21 ~ftqGL~~~~~--~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 21 AFTEGLFYLRG--HLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp CCEEEEEEETT--EEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccccEEEECC--EEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 44668999873 5777777754 8999999999998887633221 1234443 43566666778999999999887
Q ss_pred CccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEecc--C---CCeEEEEecCCCCC
Q 013827 278 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--D---KAVCTISYNPLVPN 352 (436)
Q Consensus 278 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~---~~v~~~~~~p~~~~ 352 (436)
...... ....-..++ +++.. ++++..++.|.++|..+. +.+..+.-. . ..++.+.+. ++ .
T Consensus 97 ~~~ti~-~~~~Gwglt--~dg~~-L~vSdgs~~l~~iDp~t~---------~~~~~I~V~~~g~~~~~lNeLe~~-~G-~ 161 (243)
T 3mbr_X 97 PRARFR-YPGEGWALT--SDDSH-LYMSDGTAVIRKLDPDTL---------QQVGSIKVTAGGRPLDNLNELEWV-NG-E 161 (243)
T ss_dssp EEEEEE-CSSCCCEEE--ECSSC-EEEECSSSEEEEECTTTC---------CEEEEEECEETTEECCCEEEEEEE-TT-E
T ss_pred EEEEEe-CCCCceEEe--eCCCE-EEEECCCCeEEEEeCCCC---------eEEEEEEEccCCcccccceeeEEe-CC-E
Confidence 765333 233334555 44544 555556889999999887 334444322 1 345666766 34 5
Q ss_pred EEEEEeCCCcEEEEECCCCCceeEEeeCC-----------CCCcEEEEEEcCCCCcEEEEEe
Q 013827 353 LLATGSTDKMVKLWDLSNNQPSCIASRNP-----------KAGAVFSVAFSEDSPFVLAIGG 403 (436)
Q Consensus 353 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~l~s~~ 403 (436)
+.+..-.+..|.+.|.++++......+.+ .....+.|+++|++..+++||-
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 55444467899999999998544444331 1236789999998886677663
No 253
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.75 E-value=2.4e-05 Score=66.28 Aligned_cols=207 Identities=11% Similarity=0.139 Sum_probs=134.3
Q ss_pred ccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcc-cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC
Q 013827 196 KGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 274 (436)
Q Consensus 196 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 274 (436)
+.+-...+..++|.|++..++++...++.|...|+. ++.++.+.- -....-.+++.+++ .++++.-.++.+.++++.
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDN-QFVISDERDYAIYVISLT 99 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTT-EEEEEETTTTEEEEEEEC
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCC-EEEEEECCCCcEEEEEcC
Confidence 345556899999999866677778888999999988 777777642 22567889999887 666666667889998876
Q ss_pred CCCCccc--eE-------eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEe-------ccC
Q 013827 275 ISTHSGF--KW-------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-------AHD 338 (436)
Q Consensus 275 ~~~~~~~--~~-------~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------~~~ 338 (436)
....... .. ..+.....++|+|.+..+++ +.+.....+|.+..... ...+..+. .+.
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v-a~E~~p~~i~~~~g~~~------~~~l~i~~~~~~~~~~~~ 172 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF-FKEKNPIEVYKVNGLLS------SNELHISKDKALQRQFTL 172 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE-EEESSSEEEEEEESTTC------SSCCEEEECHHHHHTCCS
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE-EECcCCceEEEEccccc------CCceeeecchhhcccccc
Confidence 6543111 11 12344689999998755555 44444445555441100 01111111 123
Q ss_pred CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCC-------CCcEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 013827 339 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK-------AGAVFSVAFSEDSPFVLAIGGSKGKLEIW 411 (436)
Q Consensus 339 ~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 411 (436)
..+..++++|..+++++.......+..+|.... ......+... ....-.|+|.++|. ++++ +.-+.+++|
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SEPNRFYRF 249 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ETTTEEEEE
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEE-cCCceEEEE
Confidence 457899999987677777777888999997754 4444555421 12568999999998 5664 666667666
Q ss_pred eCC
Q 013827 412 DTL 414 (436)
Q Consensus 412 d~~ 414 (436)
.-.
T Consensus 250 ~~~ 252 (255)
T 3qqz_A 250 TPQ 252 (255)
T ss_dssp EC-
T ss_pred Eec
Confidence 543
No 254
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.71 E-value=1e-06 Score=86.80 Aligned_cols=277 Identities=10% Similarity=-0.001 Sum_probs=146.4
Q ss_pred cceecc-CCceEEEEEecCCc------ceeEEEEEecCCCCCCceeeecccccCcCcce--eecccCCCCCCCCCcEEEE
Q 013827 78 DMTINP-NDAVIVCARNEDDV------SHLEVYILEESDGGDPNLYVHHHIIIPAFPLC--MAWLDCPLKDREKGNFMAV 148 (436)
Q Consensus 78 ~~~~sp-~~~~l~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~l~~ 148 (436)
..++.| ++++++.|+.+... ..-.++.|+........+... +.+....| ... ..++++++.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~---~~~~~~~~~~~~~-------~~~g~lyv~ 259 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT---VTKHDMFCPGISM-------DGNGQIVVT 259 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE---ECSCCCSSCEEEE-------CTTSCEEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc---CCCCCCccccccC-------CCCCCEEEe
Confidence 567778 88999988754321 223688888877643322211 11111112 222 568999999
Q ss_pred eeC-CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEe-CC----
Q 013827 149 GSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-AD---- 222 (436)
Q Consensus 149 g~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~d---- 222 (436)
|+. +..+.+||..+.+-... ..+.. ...-.+++..++| .+++.|+ .+
T Consensus 260 GG~~~~~v~~yd~~t~~W~~~-------------------------~~~~~-~R~~~s~~~~~dg-~iyv~GG~~~~~~~ 312 (656)
T 1k3i_A 260 GGNDAKKTSLYDSSSDSWIPG-------------------------PDMQV-ARGYQSSATMSDG-RVFTIGGSWSGGVF 312 (656)
T ss_dssp CSSSTTCEEEEEGGGTEEEEC-------------------------CCCSS-CCSSCEEEECTTS-CEEEECCCCCSSSC
T ss_pred CCCCCCceEEecCcCCceeEC-------------------------CCCCc-cccccceEEecCC-eEEEEeCcccCCcc
Confidence 984 46899999764321100 00111 1111234555675 4777777 44
Q ss_pred -CcEEEEeCCCCeEEEEE----cccCCCeEEEEEcCCCCCEEEEEECCC---------cEEEEecCCCCCccceEeee--
Q 013827 223 -KQVKIWDVAAGKCNLTL----EHHTDKVQAVAWNHHSPQILLSGSFDR---------SVVMKDARISTHSGFKWAVA-- 286 (436)
Q Consensus 223 -g~v~vwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~s~~~d~---------~i~~wd~~~~~~~~~~~~~~-- 286 (436)
..+.+||..+++....- ......-....+..++ ..++.++.+| .+..||..+..-........
T Consensus 313 ~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~ 391 (656)
T 1k3i_A 313 EKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSN 391 (656)
T ss_dssp CCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEET
T ss_pred cccceEeCCCCCcceeCCCccccccccccccceeecCC-ceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccc
Confidence 56999999887643320 0000000001122334 4555565544 46778877654222111111
Q ss_pred -------CCeeEEEeCCCCCcEEEEEeCCC-----------cEEEEeCCCCCCCCCCCCCcccEEEe---ccC-CCeEEE
Q 013827 287 -------ADVESLAWDPHAEHSFVVSLEDG-----------TIKGFDIRTAKSDPDSTSQQSSFTLH---AHD-KAVCTI 344 (436)
Q Consensus 287 -------~~i~~~~~~~~~~~~~~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~-~~v~~~ 344 (436)
..-.++.+...+..+++.|+.++ .+.+||..+.. ..... ... ..-.++
T Consensus 392 ~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~----------W~~~~~~~mp~~R~~~~~ 461 (656)
T 1k3i_A 392 RGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP----------NTVFASNGLYFARTFHTS 461 (656)
T ss_dssp TEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC----------EEEECTTCCSSCCBSCEE
T ss_pred cccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC----------eeEEccCCCCCCcccCCe
Confidence 12344444443447788887532 57777776541 11111 111 122345
Q ss_pred EecCCCCCEEEEEeCC-----------CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeC
Q 013827 345 SYNPLVPNLLATGSTD-----------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS 404 (436)
Q Consensus 345 ~~~p~~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 404 (436)
...|++ .+++.|+.+ ..+.+||..+.+...+..............+.|+++ +++.|+.
T Consensus 462 ~~l~~g-~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~-v~v~GG~ 530 (656)
T 1k3i_A 462 VVLPDG-STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGR-VFNGGGG 530 (656)
T ss_dssp EECTTS-CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSC-EEEEECC
T ss_pred EECCCC-CEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcE-EEecCCC
Confidence 666777 888888754 468999998776433222222222333456779998 6887875
No 255
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.70 E-value=2.4e-05 Score=77.83 Aligned_cols=212 Identities=12% Similarity=0.064 Sum_probs=135.8
Q ss_pred ccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC----eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC
Q 013827 200 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 275 (436)
Q Consensus 200 ~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 275 (436)
...+.+|+|.+.+..++++-...+.|+.+++... .....+.........|++.+.+.+++++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 4567899999865555566666678999998753 223334434456678999987756677777788999999876
Q ss_pred CCCccceEeeeCCeeEEEeCCCCCcEEEEEeCC-CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEE
Q 013827 276 STHSGFKWAVAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 354 (436)
Q Consensus 276 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 354 (436)
................|+++|..+.++++-... +.|...++... .....+...-.....|++.+.+..++
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~---------~~~~lv~~~l~~P~GLavD~~~~~LY 573 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---------DIYSLVTENIQWPNGITLDLLSGRLY 573 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---------CEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC---------ceEEEEeCCCCCceEEEEecCCCeEE
Confidence 543332222334588999999765566655443 77888888644 22222233335688999998773444
Q ss_pred EEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 355 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 355 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
++-...+.|..+++.......+...........+|++..+ +++++-...+.|...|..+++.+..+
T Consensus 574 waD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~--~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 574 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT--EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC--EEEEEECCCCEEEEEeCCCCcceEEe
Confidence 4444567899999987654344332222334567777443 46777777788999988777665544
No 256
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.68 E-value=1.6e-06 Score=73.07 Aligned_cols=172 Identities=14% Similarity=0.157 Sum_probs=111.7
Q ss_pred CCcEEEEeeCCC--cEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCccccee--EEEecCCCCcEEE
Q 013827 142 KGNFMAVGSMEP--AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL--GLAWNKEFRNILA 217 (436)
Q Consensus 142 ~~~~l~~g~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~~l~ 217 (436)
++.++.+.+.+| .|+++|+.+++....... ..... .++.. +..+.+
T Consensus 52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l----------------------------~~~~FgeGit~~--g~~ly~ 101 (262)
T 3nol_A 52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL----------------------------GKRYFGEGISDW--KDKIVG 101 (262)
T ss_dssp TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC----------------------------CTTCCEEEEEEE--TTEEEE
T ss_pred CCEEEEECCCCCCceEEEEECCCCcEEEEEec----------------------------CCccceeEEEEe--CCEEEE
Confidence 577777777766 899999998776654321 11222 24443 344566
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEee----e-CCeeEE
Q 013827 218 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV----A-ADVESL 292 (436)
Q Consensus 218 s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~----~-~~i~~~ 292 (436)
..-.++.+.+||.++.+.+.++..... -..++ +++ ..|+.+..++.|.++|..+.+......-. . ..++.+
T Consensus 102 ltw~~~~v~v~D~~t~~~~~ti~~~~e-G~glt--~dg-~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNEL 177 (262)
T 3nol_A 102 LTWKNGLGFVWNIRNLRQVRSFNYDGE-GWGLT--HND-QYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNEL 177 (262)
T ss_dssp EESSSSEEEEEETTTCCEEEEEECSSC-CCCEE--ECS-SCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEE
T ss_pred EEeeCCEEEEEECccCcEEEEEECCCC-ceEEe--cCC-CEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccccee
Confidence 666789999999999999998874322 23333 566 44555556788999999987765433221 1 335567
Q ss_pred EeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec------------cCCCeEEEEecCCCCCEEEEEe
Q 013827 293 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA------------HDKAVCTISYNPLVPNLLATGS 358 (436)
Q Consensus 293 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~~~~p~~~~~l~~~~ 358 (436)
.|. +| .+++....+..|.+.|..+++ .+..+.. .....+.|+|+|++..++++|-
T Consensus 178 e~~-~G-~lyan~w~~~~I~vIDp~tG~---------V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 178 EWV-DG-EIFANVWQTNKIVRIDPETGK---------VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEE-TT-EEEEEETTSSEEEEECTTTCB---------EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEE-CC-EEEEEEccCCeEEEEECCCCc---------EEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 776 45 566666678899999999883 3333322 1235689999998855555553
No 257
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.67 E-value=4.5e-06 Score=82.16 Aligned_cols=250 Identities=10% Similarity=0.072 Sum_probs=141.2
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 221 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 221 (436)
.+..+++++.|+.|..+|..+++.+-...... .. ........++ .. ++ .++.+..
T Consensus 116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~----------------~~--~~~~~~~~P~----v~-~~--~v~vg~~ 170 (668)
T 1kv9_A 116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTD----------------PA--KPYSITGAPR----VV-KG--KVIIGNG 170 (668)
T ss_dssp EBTEEEEECTTSEEEEEETTTCCEEEEEECSC----------------TT--SSCBCCSCCE----EE-TT--EEEECCB
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEeeeeccCC----------------CC--CcceecCCCE----EE-CC--EEEEeCC
Confidence 35678888899999999998887654321100 00 0000011111 11 32 4444433
Q ss_pred ------CCcEEEEeCCCCeEEEEEcccC-------------------------------CCeEEEEEcCCCCCEEEEEEC
Q 013827 222 ------DKQVKIWDVAAGKCNLTLEHHT-------------------------------DKVQAVAWNHHSPQILLSGSF 264 (436)
Q Consensus 222 ------dg~v~vwd~~~~~~~~~~~~~~-------------------------------~~v~~~~~~~~~~~~l~s~~~ 264 (436)
+|.|..+|..+|+.+..+.... .....+++++.. .+++.++.
T Consensus 171 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~ 249 (668)
T 1kv9_A 171 GAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTG 249 (668)
T ss_dssp CTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECC
T ss_pred CCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCC
Confidence 5899999999999887774210 011246788877 67777776
Q ss_pred CC-------------------cEEEEecCCCCCccceEee---------eCCeeEEEeCCCCC--cEEEEEeCCCcEEEE
Q 013827 265 DR-------------------SVVMKDARISTHSGFKWAV---------AADVESLAWDPHAE--HSFVVSLEDGTIKGF 314 (436)
Q Consensus 265 d~-------------------~i~~wd~~~~~~~~~~~~~---------~~~i~~~~~~~~~~--~~~~~~~~dg~i~i~ 314 (436)
++ .|.-+|.++++..-..... ..++....+..++. ..++.++.+|.++++
T Consensus 250 ~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~l 329 (668)
T 1kv9_A 250 NGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVL 329 (668)
T ss_dssp CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred CCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEE
Confidence 65 3889999888765432211 12222222223342 268888999999999
Q ss_pred eCCCCCCCCCCCCCc-cc-EEEe--------ccC-----------------CCeEEEEecCCCCCEEEEEe---------
Q 013827 315 DIRTAKSDPDSTSQQ-SS-FTLH--------AHD-----------------KAVCTISYNPLVPNLLATGS--------- 358 (436)
Q Consensus 315 d~~~~~~~~~~~~~~-~~-~~~~--------~~~-----------------~~v~~~~~~p~~~~~l~~~~--------- 358 (436)
|..+++......... .. ..+. ... ..-..++++|+. .+++...
T Consensus 330 D~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~-g~~yv~~~~~~~~~~~ 408 (668)
T 1kv9_A 330 DRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT-GLVYIPYQEVPGVYRN 408 (668)
T ss_dssp ETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEEEECCEEECC
T ss_pred ECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC-CEEEEeccccceEeee
Confidence 998884310000000 00 0000 000 001126777766 4444311
Q ss_pred ---------------------------CCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 013827 359 ---------------------------TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 411 (436)
Q Consensus 359 ---------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 411 (436)
.+|.|..||+.+++.. ...... .+.....+...+. +++.++.||.|+.|
T Consensus 409 ~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~--W~~~~~-~~~~~~~~~t~gg-~vf~g~~dg~l~a~ 484 (668)
T 1kv9_A 409 EGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAA--WKVPYP-THWNGGTLSTAGN-LVFQGTAAGQMHAY 484 (668)
T ss_dssp CGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEE--EEEEES-SSCCCCEEEETTT-EEEEECTTSEEEEE
T ss_pred eccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEE--EEccCC-CCCcCceeEeCCC-EEEEECCcccchhh
Confidence 2478999999998843 332221 1223333444555 57778999999999
Q ss_pred eCCCCcccccc
Q 013827 412 DTLSDAGISNR 422 (436)
Q Consensus 412 d~~~~~~~~~~ 422 (436)
|..+++.+.+.
T Consensus 485 d~~tG~~l~~~ 495 (668)
T 1kv9_A 485 SADKGEALWQF 495 (668)
T ss_dssp ETTTCCEEEEE
T ss_pred hhhcChhheEe
Confidence 99999988654
No 258
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.64 E-value=7.4e-05 Score=67.27 Aligned_cols=201 Identities=10% Similarity=0.007 Sum_probs=126.1
Q ss_pred cceeecccCCCCCCC-CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeE
Q 013827 127 PLCMAWLDCPLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG 205 (436)
Q Consensus 127 ~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 205 (436)
+..++| ++ ++.++.+-...+.|..++.+....... ..........
T Consensus 75 ~~~l~~-------d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~---------------------------~~~~~~~p~g 120 (349)
T 3v64_C 75 AIALDF-------HHRRELVFWSDVTLDRILRANLNGSNVEEV---------------------------VSTGLESPGG 120 (349)
T ss_dssp EEEEEE-------ETTTTEEEEEETTTTEEEEEETTSCSCEEE---------------------------ECSSCSCCCE
T ss_pred eEEEEE-------eccccEEEEEeccCCceEEEecCCCCceEE---------------------------EeCCCCCccE
Confidence 455666 54 455555555678898888875331110 1112234578
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECC-CcEEEEecCCCCCccceEe
Q 013827 206 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-RSVVMKDARISTHSGFKWA 284 (436)
Q Consensus 206 ~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~ 284 (436)
+++.+.+..++++-...+.|.+.++........+...-.....++++|.++.++++-... +.|...++...........
T Consensus 121 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 200 (349)
T 3v64_C 121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT 200 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCS
T ss_pred EEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence 888876555666666678999999876543333443445678999999764566665555 7888888875443322222
Q ss_pred eeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEE
Q 013827 285 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK 364 (436)
Q Consensus 285 ~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~ 364 (436)
.-.....++++|++..++++-...+.|..+|+... .....+.........+++. .+ .++.+-...+.|.
T Consensus 201 ~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~---------~~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~ 269 (349)
T 3v64_C 201 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS---------HRKAVISQGLPHPFAITVF-ED-SLYWTDWHTKSIN 269 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------SCEEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEE
T ss_pred CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC---------ceEEEEeCCCCCceEEEEE-CC-EEEEecCCCCeEE
Confidence 23457899999877777777777889999998653 1122222334456777773 23 5556656677888
Q ss_pred EEECCCCC
Q 013827 365 LWDLSNNQ 372 (436)
Q Consensus 365 iwd~~~~~ 372 (436)
.++..+++
T Consensus 270 ~~~~~~G~ 277 (349)
T 3v64_C 270 SANKFTGK 277 (349)
T ss_dssp EEETTTCC
T ss_pred EEEccCCC
Confidence 88865554
No 259
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.63 E-value=4.2e-06 Score=70.52 Aligned_cols=174 Identities=11% Similarity=0.061 Sum_probs=116.9
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 221 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 221 (436)
++.++.+.+.+|.|+++|+++++..... . . . ..---.+++.. ..+.+..-.
T Consensus 64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~------------------------~-~~FgeGit~~g--~~Ly~ltw~ 114 (268)
T 3nok_A 64 QGHFFESTGHQGTLRQLSLESAQPVWME-R-L------------------------G-NIFAEGLASDG--ERLYQLTWT 114 (268)
T ss_dssp TTEEEEEETTTTEEEECCSSCSSCSEEE-E-C------------------------T-TCCEEEEEECS--SCEEEEESS
T ss_pred CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-C------------------------C-CcceeEEEEeC--CEEEEEEcc
Confidence 4677778888899999999988776643 1 1 1 11112345543 356666777
Q ss_pred CCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeee-----CCeeEEEeCC
Q 013827 222 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA-----ADVESLAWDP 296 (436)
Q Consensus 222 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-----~~i~~~~~~~ 296 (436)
++.+.+||.++.+.+.++.... .-..++ +++ ..|+.+..++.|.++|..+.+......-.. ..++.+.|.
T Consensus 115 ~~~v~V~D~~Tl~~~~ti~~~~-eGwGLt--~Dg-~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~- 189 (268)
T 3nok_A 115 EGLLFTWSGMPPQRERTTRYSG-EGWGLC--YWN-GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA- 189 (268)
T ss_dssp SCEEEEEETTTTEEEEEEECSS-CCCCEE--EET-TEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred CCEEEEEECCcCcEEEEEeCCC-ceeEEe--cCC-CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-
Confidence 8999999999999999987432 223444 456 556666679999999999877654332211 245667776
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec-------------cCCCeEEEEecCCCCCEEEEEeC
Q 013827 297 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-------------HDKAVCTISYNPLVPNLLATGST 359 (436)
Q Consensus 297 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~p~~~~~l~~~~~ 359 (436)
+| .+++....+..|.+.|..+++ .+..+.. ...-.+.|+++|++.++++||-.
T Consensus 190 dG-~lyanvw~s~~I~vIDp~TG~---------V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 190 NG-VIYANIWHSSDVLEIDPATGT---------VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp TT-EEEEEETTCSEEEEECTTTCB---------EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred CC-EEEEEECCCCeEEEEeCCCCc---------EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 45 566666678899999999883 3333321 12357899999988677777643
No 260
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.61 E-value=4.1e-05 Score=76.54 Aligned_cols=250 Identities=6% Similarity=-0.033 Sum_probs=134.0
Q ss_pred ccccceec-cCCceEEEEEecCCcceeEEEEEecCCC-CCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCC
Q 013827 75 DLEDMTIN-PNDAVIVCARNEDDVSHLEVYILEESDG-GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME 152 (436)
Q Consensus 75 ~v~~~~~s-p~~~~l~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 152 (436)
.+...+|| |||++||.+....+.....|++++...+ +.... .++ +....+.|+|||+.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~------~~~-------~~~~~~~WspDg~~l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD------KVS-------GTNGEIVWGPDHTSLFYVTKD 241 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC------CEE-------EECSCCEECSSTTEEEEEEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc------ccc-------CceeeEEEecCCCEEEEEEEC
Confidence 56789999 9999999887654333357888887765 31110 011 111233449999988877765
Q ss_pred -----CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC--CCcE
Q 013827 153 -----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--DKQV 225 (436)
Q Consensus 153 -----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--dg~v 225 (436)
..|.++++.+...... .++ . .........+.|+|+|+.++++... ...|
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~-lv~----------------------~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l 297 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDV-CLY----------------------E-EHNPLFSAFMYKAADTNTLCIGSQSPETAEV 297 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCE-EEE----------------------E-CCCTTCEEEEEECTTSSEEEEEEECSSCEEE
T ss_pred CCCCCCEEEEEECCCCchhcE-EEE----------------------e-cCCCceEEEEEECCCCCEEEEEecCCCCceE
Confidence 2577777765332111 000 0 0122345678999998644444432 3358
Q ss_pred EEEeCCCC--eE-EEEE-cccCCCeEEEEEcCCCCCEEEEEECC--C--cEEEEecCCCCCccc-eEeeeC--CeeEEEe
Q 013827 226 KIWDVAAG--KC-NLTL-EHHTDKVQAVAWNHHSPQILLSGSFD--R--SVVMKDARISTHSGF-KWAVAA--DVESLAW 294 (436)
Q Consensus 226 ~vwd~~~~--~~-~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d--~--~i~~wd~~~~~~~~~-~~~~~~--~i~~~~~ 294 (436)
.++|+.++ +. +..+ ........++.|+..+ .+++....+ + .|..+|+.+...... ...+.. .+..+.+
T Consensus 298 ~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~-~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~ 376 (751)
T 2xe4_A 298 HLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS-HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV 376 (751)
T ss_dssp EEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT-EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE
T ss_pred EEEECCCCCCCceeEEeecCCCCceEEEeeeeCC-EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE
Confidence 88898765 22 1333 3344555666665443 555555554 2 566667654322222 233333 3445555
Q ss_pred CCCCCcEEEEEeCCCcEE--EEeC-------CCCCCCCCCCCCcccEEEecc-CCCeEEEEe----cCCCCCEEEEEeCC
Q 013827 295 DPHAEHSFVVSLEDGTIK--GFDI-------RTAKSDPDSTSQQSSFTLHAH-DKAVCTISY----NPLVPNLLATGSTD 360 (436)
Q Consensus 295 ~~~~~~~~~~~~~dg~i~--i~d~-------~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~----~p~~~~~l~~~~~d 360 (436)
. +..++++...++..+ ++++ ..+ .....+... ...+..+.+ ++++..++++.+..
T Consensus 377 ~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g---------~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~ 445 (751)
T 2xe4_A 377 R--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAG---------TGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSL 445 (751)
T ss_dssp C--SSEEEEEEEETTEEEEEEEECCTTTSCCCTT---------TCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEET
T ss_pred E--CCEEEEEEEeCCEEEEEEEecccccccccCC---------ccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCC
Confidence 4 456777788888654 4554 121 101222111 122333433 34554566665543
Q ss_pred ---CcEEEEECCCCCc
Q 013827 361 ---KMVKLWDLSNNQP 373 (436)
Q Consensus 361 ---~~i~iwd~~~~~~ 373 (436)
..+..+|+.+++.
T Consensus 446 ~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 446 ATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TEEEEEEEECTTTCCE
T ss_pred CCCCEEEEEECCCCcE
Confidence 4577788877654
No 261
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.60 E-value=0.00028 Score=71.21 Aligned_cols=198 Identities=10% Similarity=0.122 Sum_probs=130.3
Q ss_pred ccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcc-------cCCCeEEEEEcCCCCCEEEEEECCCcEEEEe
Q 013827 200 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKD 272 (436)
Q Consensus 200 ~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd 272 (436)
...|.++...++|. |..|+.+ -|.+||..+++....... ....|.++...++| . +-.|+.++-|..++
T Consensus 262 ~~~i~~i~~d~~g~--lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-~-lWigt~~~Gl~~~~ 336 (795)
T 4a2l_A 262 SNYIRSLAMDSQNR--LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG-G-MWLGTYFGGLNYYH 336 (795)
T ss_dssp CSBEEEEEECTTSC--EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS-C-EEEEESSSCEEEEC
T ss_pred CCeEEEEEEcCCCC--EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc-C-EEEEECCCCeEEeC
Confidence 35699999988864 4445555 588999887764433211 23579999999888 4 55677778899998
Q ss_pred cCCCCCccceE------eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEe---------cc
Q 013827 273 ARISTHSGFKW------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---------AH 337 (436)
Q Consensus 273 ~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---------~~ 337 (436)
........... .....|.++..++++ .+.+|+.++-|..||..+.. ...+. ..
T Consensus 337 ~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g--~lWiGt~~~Gl~~~~~~~~~----------~~~~~~~~~~~~~~l~ 404 (795)
T 4a2l_A 337 PIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDK--NLWIGTNDGGLNLYNPITQR----------FTSYTLQEDESARGIG 404 (795)
T ss_dssp GGGGSSEEECCCTTSSSCSCSSEEEEEECTTS--CEEEEESSSCEEEECTTTCC----------EEEECCC------CCS
T ss_pred CCcccceEEcCCCCCCCCCCCeeEEEEECCCC--CEEEEECCCCeEEEcCCCCc----------EEEEecCCCCcccCCC
Confidence 76543221110 123458889888866 36678888789999987652 11111 12
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeC--CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 338 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 338 ~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
...|.++...+++ .+|..|+.++.|..||..+++........ .....|.++...++|. +.+ |+. +.|.+||..+
T Consensus 405 ~~~v~~i~~d~~g-~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwi-gt~-~Gl~~~~~~~ 480 (795)
T 4a2l_A 405 SNNIKAVYVDEKK-SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-LWL-GTL-SALVRFNPEQ 480 (795)
T ss_dssp CSCEEEEEEETTT-TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-EEE-EES-SCEEEEETTT
T ss_pred CccEEEEEEcCCC-CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-EEE-Eec-CceeEEeCCC
Confidence 3568899888877 64667788778999999887632211100 1235799999999987 444 445 4588899876
Q ss_pred Ccc
Q 013827 416 DAG 418 (436)
Q Consensus 416 ~~~ 418 (436)
++.
T Consensus 481 ~~~ 483 (795)
T 4a2l_A 481 RSF 483 (795)
T ss_dssp TEE
T ss_pred CeE
Confidence 643
No 262
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.59 E-value=4.9e-05 Score=69.50 Aligned_cols=202 Identities=10% Similarity=0.005 Sum_probs=126.4
Q ss_pred cceeecccCCCCCCC-CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeE
Q 013827 127 PLCMAWLDCPLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG 205 (436)
Q Consensus 127 ~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 205 (436)
+..++| ++ ++.++++-...+.|+.++.+...... . ..........
T Consensus 118 ~~gl~~-------d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-~--------------------------~~~~~~~p~g 163 (386)
T 3v65_B 118 AIALDF-------HHRRELVFWSDVTLDRILRANLNGSNVEE-V--------------------------VSTGLESPGG 163 (386)
T ss_dssp EEEEEE-------ETTTTEEEEEETTTTEEEEEETTSCCEEE-E--------------------------ECSSCSCCCC
T ss_pred cEEEEE-------ecCCCeEEEEeCCCCcEEEEecCCCCcEE-E--------------------------EeCCCCCccE
Confidence 455666 54 45555565667889999886432111 0 1111234567
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECC-CcEEEEecCCCCCccceEe
Q 013827 206 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-RSVVMKDARISTHSGFKWA 284 (436)
Q Consensus 206 ~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~ 284 (436)
+++.+.+..++++-...+.|.+.++........+...-.....++++|.++.++++-... +.|...++...........
T Consensus 164 lavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 243 (386)
T 3v65_B 164 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT 243 (386)
T ss_dssp EEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence 888876555666666678899998875544344443445678999998774555555455 7788888765443322212
Q ss_pred eeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEE
Q 013827 285 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK 364 (436)
Q Consensus 285 ~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~ 364 (436)
.-.....++++|++..++++-...+.|..+|+... .....+.........+++. .+ .++.+-...+.|.
T Consensus 244 ~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~---------~~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~ 312 (386)
T 3v65_B 244 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS---------HRKAVISQGLPHPFAITVF-ED-SLYWTDWHTKSIN 312 (386)
T ss_dssp SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC---------SCEEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEE
T ss_pred CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC---------eeEEEEECCCCCceEEEEE-CC-EEEEeeCCCCeEE
Confidence 23457899999877677777777889999998643 2122233334456778873 23 5666666678898
Q ss_pred EEECCCCCc
Q 013827 365 LWDLSNNQP 373 (436)
Q Consensus 365 iwd~~~~~~ 373 (436)
.++..+++.
T Consensus 313 ~~~~~~G~~ 321 (386)
T 3v65_B 313 SANKFTGKN 321 (386)
T ss_dssp EEETTTCCS
T ss_pred EEECCCCcc
Confidence 888666553
No 263
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.58 E-value=1.8e-05 Score=70.52 Aligned_cols=244 Identities=8% Similarity=-0.011 Sum_probs=134.4
Q ss_pred ccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeccc----------------ccCcCcceeecccCCCC
Q 013827 75 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHI----------------IIPAFPLCMAWLDCPLK 138 (436)
Q Consensus 75 ~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 138 (436)
....++++|+++++.++...+ .|+.|+...... ..+..... .....|..+++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~-----~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~------ 87 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDG-----RVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY------ 87 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTS-----EEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE------
T ss_pred CceEEEEcCCCCEEEEEcCCC-----eEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEE------
Confidence 467889999999777776555 788787654311 11111000 00112344444
Q ss_pred CCC-CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccC-cccceeEEEecC-CCCcE
Q 013827 139 DRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS-HTDSVLGLAWNK-EFRNI 215 (436)
Q Consensus 139 ~s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~-~~~~~ 215 (436)
.+ ++++++ +...+.|..+|..++.. .... ....+ .......+++.+ +|. +
T Consensus 88 -~~~~g~l~v-~d~~~~i~~~d~~~g~~-~~~~-----------------------~~~~~~~~~~p~~i~~d~~~G~-l 140 (322)
T 2fp8_A 88 -NLQNNQLYI-VDCYYHLSVVGSEGGHA-TQLA-----------------------TSVDGVPFKWLYAVTVDQRTGI-V 140 (322)
T ss_dssp -ETTTTEEEE-EETTTEEEEECTTCEEC-EEEE-----------------------SEETTEECSCEEEEEECTTTCC-E
T ss_pred -cCCCCcEEE-EECCCCEEEEeCCCCEE-EEec-----------------------ccCCCCcccccceEEEecCCCE-E
Confidence 55 565444 44444577887654321 1000 00001 123467899999 874 5
Q ss_pred EEEEeC-----------------CCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCC
Q 013827 216 LASASA-----------------DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 278 (436)
Q Consensus 216 l~s~~~-----------------dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 278 (436)
.++-.. ++.|..+|..+++....... -.....+++++++..++++-...+.|..+++.....
T Consensus 141 ~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~ 219 (322)
T 2fp8_A 141 YFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK 219 (322)
T ss_dssp EEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT
T ss_pred EEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC
Confidence 554322 36788999877764333222 234567999999833445556678999999875322
Q ss_pred c--cceEeeeCCeeEEEeCCCCCcEEEEEeC----------CCcEEEEeCCCCCCCCCCCCCcccEEEeccC----CCeE
Q 013827 279 S--GFKWAVAADVESLAWDPHAEHSFVVSLE----------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD----KAVC 342 (436)
Q Consensus 279 ~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~----~~v~ 342 (436)
. .......+ ...++++++| +++++... .+.|..+|.. + +.+..+.... ..++
T Consensus 220 ~~~~~~~~~~g-P~gi~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~-G---------~~~~~~~~~~g~~~~~~~ 287 (322)
T 2fp8_A 220 GTAEVLVKIPN-PGNIKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDEF-G---------NILEVIPLPPPFAGEHFE 287 (322)
T ss_dssp TCEEEEEECSS-EEEEEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECTT-S---------CEEEEEECCTTTTTSCCC
T ss_pred CccceEEeCCC-CCCeEECCCC-CEEEEecCcccccccCCCccEEEEECCC-C---------CEEEEEECCCCCccccce
Confidence 1 11112233 7889999988 45555443 4567777764 2 2333443322 3456
Q ss_pred EEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 013827 343 TISYNPLVPNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 343 ~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
.+++. ++ .++++....+.|..+++....
T Consensus 288 ~~~~~-~g-~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 288 QIQEH-DG-LLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEEEE-TT-EEEEECSSCSEEEEEEC----
T ss_pred EEEEe-CC-EEEEeecCCCceEEEeccccc
Confidence 66663 34 555555567889888876543
No 264
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.56 E-value=0.00014 Score=73.49 Aligned_cols=278 Identities=10% Similarity=0.139 Sum_probs=166.1
Q ss_pred cccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccC-cC-cceeecccCCCCCCCCCcEEEEeeCCC
Q 013827 76 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIP-AF-PLCMAWLDCPLKDREKGNFMAVGSMEP 153 (436)
Q Consensus 76 v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~s~~~~~l~~g~~dg 153 (436)
|.++...++|.+.+.+. + .++.|+.... ... ......+ .. +.++.. .+++.+. .|+.++
T Consensus 133 i~~i~~d~~g~lwi~t~--~-----gl~~~~~~~~---~~~-~~~~~~~~~~~i~~i~~-------d~~g~lw-igt~~~ 193 (795)
T 4a2l_A 133 VNGIEEISPEQLLISTP--E-----GLIMFDIKES---KFI-DDSFSTAMHKTIASTLY-------RQGDQIY-IGTSTD 193 (795)
T ss_dssp CCEEEEEETTEEEEEET--T-----EEEEEETTTT---EEE-CSSSCHHHHTCCEEEEE-------EETTEEE-EEESSS
T ss_pred EEEEEECCCCCEEEEEC--C-----ceEEEECCCC---EEE-eccCCCCCCcceEEEEE-------CCCCCEE-EEECCC
Confidence 88888889998777653 3 5777776543 111 1100000 00 122222 3456544 466655
Q ss_pred cEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 154 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG 233 (436)
Q Consensus 154 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~ 233 (436)
.|..|+..+.+.... . ...+...|.++...++| .|..|+.++-+..||..++
T Consensus 194 Gl~~~~~~~~~~~~~------------------------~--~~~~~~~i~~i~~d~~g--~lwigt~~~Gl~~~~~~~~ 245 (795)
T 4a2l_A 194 GLYTYSITQKTFEKV------------------------I--PILGTKQIQAILQQSPT--RIWVATEGAGLFLINPKTK 245 (795)
T ss_dssp CEEEEETTTCCEEEC------------------------C------CCCEEEEEEEETT--EEEEEEBSSCEEEEETTTT
T ss_pred CEEEEeCCCCeEEEe------------------------c--CCCCCCeeEEEEEcCCC--CEEEEECCCCeEEEeCCCC
Confidence 688888764332110 0 00134568888888775 3444555445899998876
Q ss_pred eEEEEEcc-------cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE-------eeeCCeeEEEeCCCCC
Q 013827 234 KCNLTLEH-------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-------AVAADVESLAWDPHAE 299 (436)
Q Consensus 234 ~~~~~~~~-------~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-------~~~~~i~~~~~~~~~~ 299 (436)
+....... ....|.++...++| .+ ..|+.+ -|.+||..+........ -....|.++..+++|
T Consensus 246 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g- 321 (795)
T 4a2l_A 246 EIKNYLHSPSNPKSISSNYIRSLAMDSQN-RL-WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG- 321 (795)
T ss_dssp EEEEECCCTTCTTSCSCSBEEEEEECTTS-CE-EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS-
T ss_pred eEEEeecCCCCccccCCCeEEEEEEcCCC-CE-EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc-
Confidence 64433221 13569999998888 54 445555 58888876553221110 123568899998876
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEe-------ccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 013827 300 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-------AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 300 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
.+..|+.++-|..|+..... ...+. .....|.++...+++ . |-.|+.++.|..|+..+++
T Consensus 322 -~lWigt~~~Gl~~~~~~~~~----------~~~~~~~~~~~~l~~~~V~~i~~d~~g-~-lWiGt~~~Gl~~~~~~~~~ 388 (795)
T 4a2l_A 322 -GMWLGTYFGGLNYYHPIRNR----------FKNIRNIPYKNSLSDNVVSCIVEDKDK-N-LWIGTNDGGLNLYNPITQR 388 (795)
T ss_dssp -CEEEEESSSCEEEECGGGGS----------SEEECCCTTSSSCSCSSEEEEEECTTS-C-EEEEESSSCEEEECTTTCC
T ss_pred -CEEEEECCCCeEEeCCCccc----------ceEEcCCCCCCCCCCCeeEEEEECCCC-C-EEEEECCCCeEEEcCCCCc
Confidence 36678887889999876542 11111 123568899888876 4 5557778789999988765
Q ss_pred ceeEEeeC------CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 373 PSCIASRN------PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 373 ~~~~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
........ .....|.+++..+++. +|..|+.++-|.+||..+++.
T Consensus 389 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-~lWigt~~~Gl~~~d~~~~~~ 439 (795)
T 4a2l_A 389 FTSYTLQEDESARGIGSNNIKAVYVDEKKS-LVYIGTHAGGLSILHRNSGQV 439 (795)
T ss_dssp EEEECCC------CCSCSCEEEEEEETTTT-EEEEEETTTEEEEEETTTCCE
T ss_pred EEEEecCCCCcccCCCCccEEEEEEcCCCC-EEEEEeCcCceeEEeCCCCcE
Confidence 32211100 1235799999988887 245577777799999887653
No 265
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.56 E-value=6.1e-06 Score=82.52 Aligned_cols=236 Identities=10% Similarity=-0.001 Sum_probs=126.3
Q ss_pred CCC-CCCcEEEEeeC-CC----cEEEEeCCCC-CCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecC
Q 013827 138 KDR-EKGNFMAVGSM-EP----AIEIWDLDVI-DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK 210 (436)
Q Consensus 138 ~~s-~~~~~l~~g~~-dg----~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 210 (436)
.|| |||++||.+.. +| +|+++|+.++ +.+.. .-......++|+|
T Consensus 180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-----------------------------~~~~~~~~~~Wsp 230 (751)
T 2xe4_A 180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-----------------------------KVSGTNGEIVWGP 230 (751)
T ss_dssp EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-----------------------------CEEEECSCCEECS
T ss_pred EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-----------------------------cccCceeeEEEec
Confidence 349 99999986543 22 4999999876 42211 0011245789999
Q ss_pred CCCcEEEEEeCC-----CcEEEEeCCCCeE--EEEEc-ccCCCeEEEEEcCCCCCEEEEEEC---CCcEEEEecCCCCC-
Q 013827 211 EFRNILASASAD-----KQVKIWDVAAGKC--NLTLE-HHTDKVQAVAWNHHSPQILLSGSF---DRSVVMKDARISTH- 278 (436)
Q Consensus 211 ~~~~~l~s~~~d-----g~v~vwd~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~- 278 (436)
+|..++++ ..| ..|.++++.++.. ...+. ........+.|+|+| ++|+..+. ...|.++|+.++..
T Consensus 231 Dg~~l~y~-~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~l~~~d~~~~~~~ 308 (751)
T 2xe4_A 231 DHTSLFYV-TKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT-NTLCIGSQSPETAEVHLLDLRKGNAH 308 (751)
T ss_dssp STTEEEEE-EECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS-SEEEEEEECSSCEEEEEEESSSCTTC
T ss_pred CCCEEEEE-EECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC-CEEEEEecCCCCceEEEEECCCCCCC
Confidence 98644444 443 2588888877642 22332 223456788999999 55554442 34678888876521
Q ss_pred c--c-ceEeeeCCeeEEEeCCCCCcEEEEEeCC--C--cEEEEeCCCCCCCCCCCCCcccEE-EeccCC--CeEEEEecC
Q 013827 279 S--G-FKWAVAADVESLAWDPHAEHSFVVSLED--G--TIKGFDIRTAKSDPDSTSQQSSFT-LHAHDK--AVCTISYNP 348 (436)
Q Consensus 279 ~--~-~~~~~~~~i~~~~~~~~~~~~~~~~~~d--g--~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~--~v~~~~~~p 348 (436)
. . ..........++.|+. +..+++....+ + .|..+|+.+.. . ... +..+.. .+..+.+.
T Consensus 309 ~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~--------~-~~~~li~~~~~~~l~~~~~~- 377 (751)
T 2xe4_A 309 NTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPS--------D-WSHVLVDHSEDVFMESIAVR- 377 (751)
T ss_dssp CCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTT--------C-CCCEEECCCSSEEEEEEEEC-
T ss_pred ceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcc--------c-ceeeEECCCCCcEEEEEEEE-
Confidence 1 1 1112234445555544 54566665544 3 56666665320 1 112 222333 34445554
Q ss_pred CCCCEEEEEeCCCc--EEEEEC-------CCCCceeEEeeCCCCCcEEEEEE----cCCCCcEEEEEeCC---CcEEEEe
Q 013827 349 LVPNLLATGSTDKM--VKLWDL-------SNNQPSCIASRNPKAGAVFSVAF----SEDSPFVLAIGGSK---GKLEIWD 412 (436)
Q Consensus 349 ~~~~~l~~~~~d~~--i~iwd~-------~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~l~s~~~d---g~i~iwd 412 (436)
+..++++...++. |.++++ .+++......+... ..+..+.+ ++++..++++.+.. ..+..+|
T Consensus 378 -~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~-~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d 455 (751)
T 2xe4_A 378 -SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEP-IFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVS 455 (751)
T ss_dssp -SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCS-SCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEEC
T ss_pred -CCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCc-eeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 4366777777776 455565 33330112222221 22334433 34665555555443 3577778
Q ss_pred CCCCc
Q 013827 413 TLSDA 417 (436)
Q Consensus 413 ~~~~~ 417 (436)
+.+++
T Consensus 456 ~~~~~ 460 (751)
T 2xe4_A 456 PQDHS 460 (751)
T ss_dssp TTTCC
T ss_pred CCCCc
Confidence 77664
No 266
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.55 E-value=4.1e-07 Score=89.82 Aligned_cols=211 Identities=12% Similarity=0.067 Sum_probs=127.1
Q ss_pred cceeEEEecCCCCcEEEEEeCCCcEEEEeCCC----CeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC
Q 013827 201 DSVLGLAWNKEFRNILASASADKQVKIWDVAA----GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS 276 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 276 (436)
..+.+++|.+.+..++++-...+.|+.+++.. ......+.........|++.+.++.++++-...+.|.+.++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 35678899987544444445567899999875 22222222122235678888655466666566788999998755
Q ss_pred CCccceEeeeCCeeEEEeCCCCCcEEEEEeCC-CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEE
Q 013827 277 THSGFKWAVAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA 355 (436)
Q Consensus 277 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 355 (436)
...............++++|.+..++++-... +.|..+++... .........-...+.|+|+|++..+++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~---------~~~~l~~~~l~~PnGlavd~~~~~LY~ 556 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---------DIYSLVTENIQWPNGITLDLLSGRLYW 556 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC---------CCCEESCSSCSSCCCEEECTTTCCEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC---------CeeEEEeCCCCCccEEEEeccCCEEEE
Confidence 43221112234567889998765555554333 67777776543 111111122345678999998756666
Q ss_pred EEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 356 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 356 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
+-+..+.|..+++.......+............|++..+ .++++....+.|..++..+++.+..+
T Consensus 557 aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 557 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp EETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred EecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEEe
Confidence 666778899999976543233222122223445666554 46777777789999998877765544
No 267
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.54 E-value=2.2e-05 Score=65.61 Aligned_cols=173 Identities=12% Similarity=0.090 Sum_probs=110.8
Q ss_pred CcEEEEeeCC--CcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEe
Q 013827 143 GNFMAVGSME--PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 220 (436)
Q Consensus 143 ~~~l~~g~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 220 (436)
+.++.+.+.+ ..|+++|+.+++........ .+. ---.+++. +..+....-
T Consensus 31 ~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~-------------------------~~~-fgeGi~~~--~~~ly~ltw 82 (243)
T 3mbr_X 31 GHLYESTGETGRSSVRKVDLETGRILQRAEVP-------------------------PPY-FGAGIVAW--RDRLIQLTW 82 (243)
T ss_dssp TEEEEEECCTTSCEEEEEETTTCCEEEEEECC-------------------------TTC-CEEEEEEE--TTEEEEEES
T ss_pred CEEEEECCCCCCceEEEEECCCCCEEEEEeCC-------------------------CCc-ceeEEEEe--CCEEEEEEe
Confidence 5666666665 48999999988766543211 111 11223443 335666667
Q ss_pred CCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEeee-----CCeeEEEeC
Q 013827 221 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA-----ADVESLAWD 295 (436)
Q Consensus 221 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-----~~i~~~~~~ 295 (436)
.++.+.+||.++.+.+.++.... .-..++ +++ ..|+.+..++.|.++|..+.+......-.. ..++.+.+.
T Consensus 83 ~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg-~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~ 158 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRARFRYPG-EGWALT--SDD-SHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV 158 (243)
T ss_dssp SSSEEEEEETTTTEEEEEEECSS-CCCEEE--ECS-SCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred eCCEEEEEECCcCcEEEEEeCCC-CceEEe--eCC-CEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe
Confidence 78999999999999999987433 224444 456 445555668999999999877654332211 345666666
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec-------------cCCCeEEEEecCCCCCEEEEEe
Q 013827 296 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-------------HDKAVCTISYNPLVPNLLATGS 358 (436)
Q Consensus 296 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~p~~~~~l~~~~ 358 (436)
++ .+++....+..|.+.|.++++ .+..+.. ...-.+.|+++|++.++++||-
T Consensus 159 -~G-~lyanvw~s~~I~vIDp~tG~---------V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 159 -NG-ELLANVWLTSRIARIDPASGK---------VVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp -TT-EEEEEETTTTEEEEECTTTCB---------EEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred -CC-EEEEEECCCCeEEEEECCCCC---------EEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 34 566666578899999999884 2333321 1235689999998856666664
No 268
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.50 E-value=6.8e-05 Score=66.21 Aligned_cols=230 Identities=7% Similarity=0.034 Sum_probs=128.0
Q ss_pred cccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeecccccCcCcceeecccCCCCCCCCCcEEEEeeCCC
Q 013827 74 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP 153 (436)
Q Consensus 74 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 153 (436)
.....++|+|+++++++-...+ +|+.++.... .... ...+..+..+++ .++|+++++.....
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~-----~I~~~d~~g~---~~~~---~~~~~~p~gia~-------~~dG~l~vad~~~~ 93 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVG-----EIVSITPDGN---QQIH---ATVEGKVSGLAF-------TSNGDLVATGWNAD 93 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTT-----EEEEECTTCC---EEEE---EECSSEEEEEEE-------CTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCC-----eEEEECCCCc---eEEE---EeCCCCceeEEE-------cCCCcEEEEeccCC
Confidence 4567899999999766654444 7888876543 1111 112334555555 78898766654433
Q ss_pred --cEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEEEEeCC
Q 013827 154 --AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 231 (436)
Q Consensus 154 --~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~ 231 (436)
.|..++..+++... ... . ........++..+. ...+++-..++.|.++|..
T Consensus 94 ~~~v~~~d~~~g~~~~-~~~------------------------~-~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~ 146 (306)
T 2p4o_A 94 SIPVVSLVKSDGTVET-LLT------------------------L-PDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVV 146 (306)
T ss_dssp SCEEEEEECTTSCEEE-EEE------------------------C-TTCSCEEEEEESSS-SEEEEEETTTTEEEEEETT
T ss_pred cceEEEEcCCCCeEEE-EEe------------------------C-CCccccCcccccCC-CcEEEEECCCCeEEEEeCC
Confidence 36666655443211 000 0 01112234444454 3345555468899999987
Q ss_pred CCeE-EEEEc---------ccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc--cceEeeeCCeeEEEeCCCCC
Q 013827 232 AGKC-NLTLE---------HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS--GFKWAVAADVESLAWDPHAE 299 (436)
Q Consensus 232 ~~~~-~~~~~---------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~--~~~~~~~~~i~~~~~~~~~~ 299 (436)
+++. +.... ..-.....+ ++++..++++-...+.|..+++...... ............++++++|
T Consensus 147 ~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG- 223 (306)
T 2p4o_A 147 QPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEG- 223 (306)
T ss_dssp TTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTC-
T ss_pred CCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCC-
Confidence 6532 21111 111234555 7777455666667789999998752111 1112222456788999987
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEec---CCCCCEEEEEeCC
Q 013827 300 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN---PLVPNLLATGSTD 360 (436)
Q Consensus 300 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~~~~~l~~~~~d 360 (436)
+++++....+.|.++|.... ...+..+.......++++|. |++ ..|++.+..
T Consensus 224 ~l~va~~~~~~V~~~~~~G~--------~~~~~~~~~~~~~p~~~a~~g~~~d~-~~LyVt~~~ 278 (306)
T 2p4o_A 224 NLYGATHIYNSVVRIAPDRS--------TTIIAQAEQGVIGSTAVAFGQTEGDC-TAIYVVTNG 278 (306)
T ss_dssp CEEEECBTTCCEEEECTTCC--------EEEEECGGGTCTTEEEEEECCSTTTT-TEEEEEECT
T ss_pred CEEEEeCCCCeEEEECCCCC--------EEEEeecccccCCceEEEEecccCCC-CEEEEECCC
Confidence 57777677889999986521 00011122223568899998 787 455554443
No 269
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.50 E-value=8.8e-05 Score=65.78 Aligned_cols=181 Identities=11% Similarity=0.009 Sum_probs=117.5
Q ss_pred CcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC---CCccceEe-eeCCeeEEEeCCCC
Q 013827 223 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS---THSGFKWA-VAADVESLAWDPHA 298 (436)
Q Consensus 223 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~-~~~~i~~~~~~~~~ 298 (436)
..|+..|+.+.+....+. ....+..++|++.+..++++-...+.|..+++... ........ .-..+..+++++.+
T Consensus 10 ~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence 569999998876655554 34567899999876466666666789999998762 22111221 12356788888766
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCC-CcEEEEECCCCCceeEE
Q 013827 299 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD-KMVKLWDLSNNQPSCIA 377 (436)
Q Consensus 299 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~ 377 (436)
.+++++-...+.|.++++... ...............+++.|.+..++.+.... +.|..+++.......+
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g~---------~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~- 158 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKGV---------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL- 158 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSS---------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE-
T ss_pred CeEEEEECCCCEEEEEeCCCC---------ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEE-
Confidence 667777778899999998643 11222222335678999999773444444333 6888888875442222
Q ss_pred eeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 378 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 378 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
........+.+++++++..++++-...+.|..+|+..
T Consensus 159 -~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 159 -VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp -ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred -EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 2223446889999998776666666678999999864
No 270
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.43 E-value=0.00036 Score=67.86 Aligned_cols=206 Identities=11% Similarity=0.058 Sum_probs=135.5
Q ss_pred cceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc
Q 013827 201 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG 280 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 280 (436)
..+.+++|++.+..++.+-..++.|..+++........+.........+++.+.+++++++-...+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 45789999997655566666678999999876544444443334577899987764666766677889999987654332
Q ss_pred ceEeeeCCeeEEEeCCCCCcEEEEE-eCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeC
Q 013827 281 FKWAVAADVESLAWDPHAEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 359 (436)
Q Consensus 281 ~~~~~~~~i~~~~~~~~~~~~~~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 359 (436)
.....-.....++++|..+.++++- +..+.|...++... . ...+...-.....+++++++..+..+-..
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~---------~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~ 186 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS---------E-RTTLVPNVGRANGLTIDYAKRRLYWTDLD 186 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---------S-CEEEECSCSSEEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC---------c-eEEEECCCCCcceEEEccccCEEEEEECC
Confidence 2223335678999998665555554 23567777777644 1 22333345667899999987445555556
Q ss_pred CCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 360 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 360 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
.+.|..+|+.......+. .......++++.. + +++++-...+.|...|..+++....
T Consensus 187 ~~~I~~~d~dG~~~~v~~---~~l~~P~glav~~-~-~ly~tD~~~~~I~~~dk~tg~~~~~ 243 (628)
T 4a0p_A 187 TNLIESSNMLGLNREVIA---DDLPHPFGLTQYQ-D-YIYWTDWSRRSIERANKTSGQNRTI 243 (628)
T ss_dssp TTEEEEEETTSCSCEEEE---ECCSCEEEEEEET-T-EEEEEETTTTEEEEEETTTCCSCEE
T ss_pred CCEEEEEcCCCCceEEee---ccCCCceEEEEEC-C-EEEEecCCCCEEEEEECCCCCceEE
Confidence 788999999876542222 2233456888866 3 3677666688999999877765443
No 271
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.41 E-value=6.7e-05 Score=72.36 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=37.5
Q ss_pred CCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 360 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 360 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
.|.|..||+.+++..-...... +...-.+.-.+. ++..++.||.|+.||..+++.+.+.
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagg-~vf~gt~dg~l~A~D~~tG~~lW~~ 510 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMERF---AVWGGTMATAGD-LVFYGTLDGYLKARDSDTGDLLWKF 510 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEESS---CCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cCeEEEEECCCCCEEeEecCCC---CccCcceEecCC-EEEEECCCCeEEEEECCCCCEEEEe
Confidence 4678889999887432222221 111111222344 4666899999999999999988654
No 272
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.39 E-value=4.1e-05 Score=73.81 Aligned_cols=242 Identities=9% Similarity=0.010 Sum_probs=136.6
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 221 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 221 (436)
.+..+++++.|+.|..+|..+++.+-...... .. ........++ .. ++ .++.++.
T Consensus 114 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~----------------~~--~~~~~~~~P~----v~-~g--~v~vg~~ 168 (571)
T 2ad6_A 114 GAGQIVKKQANGHLLALDAKTGKINWEVEVCD----------------PK--VGSTLTQAPF----VA-KD--TVLMGCS 168 (571)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC----------------GG--GTCBCCSCCE----EE-TT--EEEEECB
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEEEecCCC----------------CC--ccceeccCCE----EE-CC--EEEEEec
Confidence 35678888889999999998877654321100 00 0000011111 11 32 4555554
Q ss_pred ------CCcEEEEeCCCCeEEEEEcccCCC-------------------------------------e-EEEEEcCCCCC
Q 013827 222 ------DKQVKIWDVAAGKCNLTLEHHTDK-------------------------------------V-QAVAWNHHSPQ 257 (436)
Q Consensus 222 ------dg~v~vwd~~~~~~~~~~~~~~~~-------------------------------------v-~~~~~~~~~~~ 257 (436)
++.|..+|.++++.+..+...... + ..+++.+.. .
T Consensus 169 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~-g 247 (571)
T 2ad6_A 169 GAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-N 247 (571)
T ss_dssp CGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-T
T ss_pred CCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCC-C
Confidence 789999999999988776432110 0 134566655 4
Q ss_pred EEEEEECC----------------CcEEEEecCCCCCccceEeee---------CCeeEEEeCCCCC--cEEEEEeCCCc
Q 013827 258 ILLSGSFD----------------RSVVMKDARISTHSGFKWAVA---------ADVESLAWDPHAE--HSFVVSLEDGT 310 (436)
Q Consensus 258 ~l~s~~~d----------------~~i~~wd~~~~~~~~~~~~~~---------~~i~~~~~~~~~~--~~~~~~~~dg~ 310 (436)
.++.+..+ +.|..+|.++++..-...... ....-+....++. ..++.++.+|.
T Consensus 248 ~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~ 327 (571)
T 2ad6_A 248 LFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGI 327 (571)
T ss_dssp EEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSE
T ss_pred eEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcE
Confidence 55555432 358889998877543222110 1111122223442 35777889999
Q ss_pred EEEEeCCCCCCCCCCCCCcccEEEeccC-------------CCe--------------------------EEEEecCCCC
Q 013827 311 IKGFDIRTAKSDPDSTSQQSSFTLHAHD-------------KAV--------------------------CTISYNPLVP 351 (436)
Q Consensus 311 i~i~d~~~~~~~~~~~~~~~~~~~~~~~-------------~~v--------------------------~~~~~~p~~~ 351 (436)
+.++|..+++. +....... .++ ..++++|+.
T Consensus 328 l~~lD~~tG~~---------~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~- 397 (571)
T 2ad6_A 328 LYTLNRENGNL---------IVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES- 397 (571)
T ss_dssp EEEEETTTCCE---------EEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT-
T ss_pred EEEEECCCCCE---------EeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC-
Confidence 99999988742 22211100 000 246778876
Q ss_pred CEEEEEe-------------------------------------CCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCC
Q 013827 352 NLLATGS-------------------------------------TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED 394 (436)
Q Consensus 352 ~~l~~~~-------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 394 (436)
.++++.. .++.|..||..+++..-...... .+....+...
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~---~~~~~~~~t~ 474 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF---AAWGGTLYTK 474 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS---CCCSBCEEET
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC---CccceeEEEC
Confidence 5555543 35789999999888433322221 2222222223
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCccccccc
Q 013827 395 SPFVLAIGGSKGKLEIWDTLSDAGISNRF 423 (436)
Q Consensus 395 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (436)
+. ++..++.||.|+.||..+++.+.+.-
T Consensus 475 gg-~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 475 GG-LVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp TT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CC-EEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 44 46668999999999999999886643
No 273
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.36 E-value=0.00061 Score=60.27 Aligned_cols=203 Identities=11% Similarity=-0.013 Sum_probs=125.5
Q ss_pred cceeecccCCCCCCC-CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeE
Q 013827 127 PLCMAWLDCPLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG 205 (436)
Q Consensus 127 ~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 205 (436)
+..++| ++ ++.++.+-...+.|..++.+........ ....-.....
T Consensus 37 ~~~ld~-------d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~--------------------------~~~~l~~p~g 83 (318)
T 3sov_A 37 AAAVDF-------VFSHGLIYWSDVSEEAIKRTEFNKTESVQNV--------------------------VVSGLLSPDG 83 (318)
T ss_dssp EEEEEE-------EGGGTEEEEEETTTTEEEEEETTSSSCCCEE--------------------------EEECCSCCCE
T ss_pred cEEEEE-------EeCCCEEEEEECCCCcEEEEEccCCCceEEE--------------------------EcCCCCCccE
Confidence 345666 44 4555666666788999988754221110 0011234667
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEE-CCCcEEEEecCCCCCccceEe
Q 013827 206 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-FDRSVVMKDARISTHSGFKWA 284 (436)
Q Consensus 206 ~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~ 284 (436)
+++.+.+..++++-...+.|.+++++.......+.........+++.|.++.++++-. ..+.|...++...........
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence 8888765556666667789999998754433333344456789999987634444432 357788888765433221112
Q ss_pred eeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEE
Q 013827 285 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK 364 (436)
Q Consensus 285 ~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~ 364 (436)
.-.....+++++++..++++-...+.|..+|+... ...............+++.. ..++.+-...+.|.
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~---------~~~~~~~~~~~~P~glav~~--~~lywtd~~~~~V~ 232 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT---------NRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSIL 232 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------SCEEEECSCCSCEEEEEEET--TEEEEEETTTTEEE
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC---------ceEEEecCCCCCceEEEEeC--CEEEEEecCCCeEE
Confidence 22457899999977677777778889999998643 11112222344566777753 25566656678899
Q ss_pred EEECCCCCc
Q 013827 365 LWDLSNNQP 373 (436)
Q Consensus 365 iwd~~~~~~ 373 (436)
.++..+++.
T Consensus 233 ~~~~~~G~~ 241 (318)
T 3sov_A 233 ACNKYTGEG 241 (318)
T ss_dssp EEETTTCCS
T ss_pred EEECCCCCc
Confidence 999876654
No 274
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.34 E-value=9.7e-05 Score=72.71 Aligned_cols=188 Identities=10% Similarity=0.121 Sum_probs=109.7
Q ss_pred ceeEEEecCCCCcEEEEEeCCC-------------------cEEEEeCCCCeEEEEEcc--cC-------CCeEEEEEcC
Q 013827 202 SVLGLAWNKEFRNILASASADK-------------------QVKIWDVAAGKCNLTLEH--HT-------DKVQAVAWNH 253 (436)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~~~dg-------------------~v~vwd~~~~~~~~~~~~--~~-------~~v~~~~~~~ 253 (436)
....+++.|++ .+++.++.++ .|..+|..+++.+..++. |. .++....+..
T Consensus 231 ~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~ 309 (668)
T 1kv9_A 231 VWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI 309 (668)
T ss_dssp CCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE
T ss_pred cccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc
Confidence 34457888875 4777777665 499999999998877753 22 2332233333
Q ss_pred CCC--CEEEEEECCCcEEEEecCCCCCccceE--------eee----CC------------------------eeEEEeC
Q 013827 254 HSP--QILLSGSFDRSVVMKDARISTHSGFKW--------AVA----AD------------------------VESLAWD 295 (436)
Q Consensus 254 ~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~--------~~~----~~------------------------i~~~~~~ 295 (436)
++. ..++.++.+|.++++|..+++.+.... ... .+ -..++++
T Consensus 310 ~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~d 389 (668)
T 1kv9_A 310 DGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFN 389 (668)
T ss_dssp TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEE
T ss_pred CCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceEC
Confidence 451 268889999999999998887652110 000 00 0125666
Q ss_pred CCCCcEEEEE------------------------------------eCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCC
Q 013827 296 PHAEHSFVVS------------------------------------LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK 339 (436)
Q Consensus 296 ~~~~~~~~~~------------------------------------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 339 (436)
|+.. ++++. ..+|.|..||+.++ +.+.....+ .
T Consensus 390 p~~g-~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG---------~~~W~~~~~-~ 458 (668)
T 1kv9_A 390 PGTG-LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQ---------KAAWKVPYP-T 458 (668)
T ss_dssp TTTT-EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTT---------EEEEEEEES-S
T ss_pred CCCC-EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCC---------cEEEEccCC-C
Confidence 6553 33321 12377899999887 444444432 2
Q ss_pred CeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEe
Q 013827 340 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG 403 (436)
Q Consensus 340 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 403 (436)
+.....+...+ .++++++.|+.++.||.++++........... .-.-+.+..+|+..++.+.
T Consensus 459 ~~~~~~~~t~g-g~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~-~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 459 HWNGGTLSTAG-NLVFQGTAAGQMHAYSADKGEALWQFEAQSGI-VAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp SCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEEEEEEEE
T ss_pred CCcCceeEeCC-CEEEEECCcccchhhhhhcChhheEecCCCCc-ccCceEEEECCEEEEEEEe
Confidence 22323333445 78888999999999999999854333332110 0112344556663344443
No 275
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.30 E-value=0.00044 Score=63.41 Aligned_cols=188 Identities=11% Similarity=0.012 Sum_probs=121.9
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC---CccceEe-eeCCee
Q 013827 215 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST---HSGFKWA-VAADVE 290 (436)
Q Consensus 215 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~-~~~~i~ 290 (436)
+|+.+.. ..|+..++........+. ....+..++|++.+..++++-...+.|+.+++.... ....... ....+.
T Consensus 85 ~ll~~~~-~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEET-TEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEecc-ceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 4544443 689999988765554444 456788999998764555665667889989887532 1111222 234577
Q ss_pred EEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEe-C-CCcEEEEEC
Q 013827 291 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-T-DKMVKLWDL 368 (436)
Q Consensus 291 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~-d~~i~iwd~ 368 (436)
.+++++.+.+++++-...+.|.+.++... .....+.........+++.|.+ ..|+... . .+.|...++
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~---------~~~~l~~~~~~~P~~iavdp~~-g~ly~td~~~~~~I~~~~~ 232 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGV---------KRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGL 232 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTC---------SEEEEEECSSCCEEEEEEETTT-TEEEEEECSSSCCEEEEET
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCC---------ceEEEEeCCCCCcceEEEeccc-CeEEEEeCCCCCEEEEEeC
Confidence 88888766677777778889999998754 2222233334557899999976 4444443 2 478999998
Q ss_pred CCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 369 SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 369 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
.......+ ........+.|++++++..++++-...+.|..+|+...
T Consensus 233 dG~~~~~~--~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (400)
T 3p5b_L 233 NGVDIYSL--VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 278 (400)
T ss_dssp TSCSCEEE--ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCccEEE--EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence 76553222 22333468899999887766665556788999998643
No 276
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.29 E-value=0.0002 Score=66.38 Aligned_cols=205 Identities=7% Similarity=0.097 Sum_probs=114.4
Q ss_pred ccceeEEEecCCCCcEEEEEeCCC----cEEEEeCCCCeEE--EEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEec
Q 013827 200 TDSVLGLAWNKEFRNILASASADK----QVKIWDVAAGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 273 (436)
Q Consensus 200 ~~~v~~~~~~~~~~~~l~s~~~dg----~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~ 273 (436)
......++|+++|..++++...++ .+.+.+. .+... ..+.. ......++++|++..++++-..++.|..++.
T Consensus 178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~ 255 (430)
T 3tc9_A 178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDF 255 (430)
T ss_dssp CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEET
T ss_pred CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence 456789999999753444443222 2333443 22211 22321 2345678899943377777767889999998
Q ss_pred CCCCCccceEee--eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEecc--------------
Q 013827 274 RISTHSGFKWAV--AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-------------- 337 (436)
Q Consensus 274 ~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-------------- 337 (436)
....... .... ......++|+|++..++++-...+.|..++....... ......+.+.
T Consensus 256 ~~~~~~~-~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~-----~~~~~~~ag~~g~~g~~dg~~~~a 329 (430)
T 3tc9_A 256 TTQETTP-LFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKR-----LTTPYIVCGQQGAKDWVDGVGKKA 329 (430)
T ss_dssp TTTEEEE-EEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE-----ECCCEEEEECTTCBCCBCEEGGGC
T ss_pred CCCcEEE-EEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCccccc-----ccceEEEeccCCCCCCCCCCCcce
Confidence 7654321 1121 2357899999998556777778889999876532100 0001111111
Q ss_pred -CCCeE-EEEec--------CCCCCEEEEEeCCCcEEEEECCCCCceeEEee-----CC----------CCCcEEEEEEc
Q 013827 338 -DKAVC-TISYN--------PLVPNLLATGSTDKMVKLWDLSNNQPSCIASR-----NP----------KAGAVFSVAFS 392 (436)
Q Consensus 338 -~~~v~-~~~~~--------p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~----------~~~~v~~~~~~ 392 (436)
-.... .++.. +++ .++++-...+.|+.++. ++....+... .+ .-.....++++
T Consensus 330 ~~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd 407 (430)
T 3tc9_A 330 RMHAPRQGTFVKNPAYKGSSDEY-DFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYD 407 (430)
T ss_dssp BBSSEEEEEEEECGGGTTSSCCE-EEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEE
T ss_pred EeCCCcceEEEccccccccCCCC-eEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEE
Confidence 01122 45543 234 45555455678888883 3442222221 00 01247899999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCC
Q 013827 393 EDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 393 ~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
|++..++++-..++.|+.++++
T Consensus 408 ~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 408 EERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCCEEEEEECCCCeEEEEccC
Confidence 9543467766667788888764
No 277
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.28 E-value=0.0013 Score=66.23 Aligned_cols=284 Identities=9% Similarity=0.057 Sum_probs=159.9
Q ss_pred ccccccceeccCCceEEEEEecCCcceeEEEEEecCCCCCCceeeec-----cccc-CcCcceeecccCCCCCCCCCcEE
Q 013827 73 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHH-----HIII-PAFPLCMAWLDCPLKDREKGNFM 146 (436)
Q Consensus 73 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~s~~~~~l 146 (436)
...|.++...++|.+.+... .+ .|..++..... ...+... ...+ ...+.++.- .++|. |
T Consensus 312 ~~~v~~i~~D~~g~lWigt~-~~-----Gl~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~v~~i~~-------d~~g~-l 376 (781)
T 3v9f_A 312 NASARYIFQDSFNNIWIGTW-GG-----GINFISNAPPT-FHTWSYSPTQMNESSLSNKVVSSVCD-------DGQGK-L 376 (781)
T ss_dssp SSCEEEEEECSSCCEEEEEB-SS-----CEEEECSSCCS-CEEEC----CCCSSCCSSSCEEEEEE-------CTTSC-E
T ss_pred CCeEEEEEEeCCCCEEEEec-CC-----eEEEeCCCCCc-ceeeccCccccccCCCCCcceEEEEE-------cCCCC-E
Confidence 35678888888887665442 33 35555554331 1111110 0111 112233322 44555 5
Q ss_pred EEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeCCCcEE
Q 013827 147 AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVK 226 (436)
Q Consensus 147 ~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 226 (436)
-.|+.++-|..|+..+.....- ..........|.++...++|. |..|+.++-+.
T Consensus 377 Wigt~~~Gl~~~~~~~~~~~~~------------------------~~~~~~~~~~v~~i~~d~~g~--lWigt~~~Gl~ 430 (781)
T 3v9f_A 377 WIGTDGGGINVFENGKRVAIYN------------------------KENRELLSNSVLCSLKDSEGN--LWFGTYLGNIS 430 (781)
T ss_dssp EEEEBSSCEEEEETTEEEEECC-----------------------------CCCSBEEEEEECTTSC--EEEEETTEEEE
T ss_pred EEEeCCCcEEEEECCCCeEEEc------------------------cCCCCCCCcceEEEEECCCCC--EEEEeccCCEE
Confidence 5667667788888754221100 000012346799999888763 44577667799
Q ss_pred EEeCCCCeEEEEEc--ccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEee-----eCCeeEEEeCCCCC
Q 013827 227 IWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-----AADVESLAWDPHAE 299 (436)
Q Consensus 227 vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-----~~~i~~~~~~~~~~ 299 (436)
.+|..+++...... .....|.++...+++ . |..|+. +-|..+|..+.......... ...+.++..++++.
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g-~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~ 507 (781)
T 3v9f_A 431 YYNTRLKKFQIIELEKNELLDVRVFYEDKNK-K-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR 507 (781)
T ss_dssp EECSSSCEEEECCSTTTCCCCEEEEEECTTS-E-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC
T ss_pred EEcCCCCcEEEeccCCCCCCeEEEEEECCCC-C-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC
Confidence 99987765432221 134678999888877 4 445555 56888998765443211111 35688888888763
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec----cCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCcee
Q 013827 300 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA----HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 375 (436)
Q Consensus 300 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~ 375 (436)
+..|+.++-+..||..+.. ...+.. ....|.++...+++ .+.+ ++.+|.|..||..+.+...
T Consensus 508 --lWigt~~~Gl~~~~~~~~~----------~~~~~~~~~l~~~~i~~i~~d~~g-~lWi-~T~~Glv~~~d~~~~~~~~ 573 (781)
T 3v9f_A 508 --FWIGTFGGGVGIYTPDMQL----------VRKFNQYEGFCSNTINQIYRSSKG-QMWL-ATGEGLVCFPSARNFDYQV 573 (781)
T ss_dssp --EEEEESSSCEEEECTTCCE----------EEEECTTTTCSCSCEEEEEECTTS-CEEE-EETTEEEEESCTTTCCCEE
T ss_pred --EEEEEcCCCEEEEeCCCCe----------EEEccCCCCCCCCeeEEEEECCCC-CEEE-EECCCceEEECCCCCcEEE
Confidence 5556654457778876541 122211 23568889888877 5444 4446654888887765322
Q ss_pred EEeeCC-CCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 376 IASRNP-KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 376 ~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
.....+ ....|.++...++|. +.+ ++.+| |..|+..+++
T Consensus 574 ~~~~~gl~~~~i~~i~~d~~g~-lW~-~t~~G-l~~~~~~~~~ 613 (781)
T 3v9f_A 574 FQRKEGLPNTHIRAISEDKNGN-IWA-STNTG-ISCYITSKKC 613 (781)
T ss_dssp ECGGGTCSCCCCCEEEECSSSC-EEE-ECSSC-EEEEETTTTE
T ss_pred ccccCCCCCceEEEEEECCCCC-EEE-EcCCc-eEEEECCCCc
Confidence 211111 123578899999997 444 45555 6677766543
No 278
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.27 E-value=0.00025 Score=65.76 Aligned_cols=204 Identities=8% Similarity=0.092 Sum_probs=115.6
Q ss_pred ccceeEEEecCCCCcEEEEEeCC---C-cEEEEeCCCCeE-EEEEcccCCCeEEEEEcC-CCCCEEEEEECCCcEEEEec
Q 013827 200 TDSVLGLAWNKEFRNILASASAD---K-QVKIWDVAAGKC-NLTLEHHTDKVQAVAWNH-HSPQILLSGSFDRSVVMKDA 273 (436)
Q Consensus 200 ~~~v~~~~~~~~~~~~l~s~~~d---g-~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~d~~i~~wd~ 273 (436)
......++++++|. ++++.... . .+...+...+.. ...+. .-.....++++| ++ .++++-..++.|+.+|.
T Consensus 181 ~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G-~lyv~d~~~~~V~~~d~ 257 (433)
T 4hw6_A 181 IGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNG-KIYYTRYHHAMISSYDP 257 (433)
T ss_dssp CSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTC-CEEECBTTCSEEEEECT
T ss_pred CCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCC-eEEEEECCCCEEEEEEC
Confidence 34588999999985 55544321 1 133333222111 11222 223456788999 55 76666667788999998
Q ss_pred CCCCCccceEee--eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEecc--------------
Q 013827 274 RISTHSGFKWAV--AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-------------- 337 (436)
Q Consensus 274 ~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-------------- 337 (436)
.++......... ......++|+|++..++++-...+.|+.++........ .....+.+.
T Consensus 258 ~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~-----~~~~~~ag~~g~~g~~dg~~~~a 332 (433)
T 4hw6_A 258 ATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKL-----AVPYIVCGQHSSPGWVDGMGTGA 332 (433)
T ss_dssp TTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCB-----CCCEEEEECTTCCCCBCEEGGGS
T ss_pred CCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCccc-----CcEEEEEecCCCCccCCCcccce
Confidence 755441212211 12234699999986567777778899998865321000 001111111
Q ss_pred -CCCeEEEEe---------cCCCCCEEEEEeCCCcEEEEECCCCCceeEEeeCC---------------CCCcEEEEEEc
Q 013827 338 -DKAVCTISY---------NPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP---------------KAGAVFSVAFS 392 (436)
Q Consensus 338 -~~~v~~~~~---------~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------------~~~~v~~~~~~ 392 (436)
-.....+++ .+++ .++++-...+.|+.++. ++....+..... .-.....|+++
T Consensus 333 ~~~~P~giav~~n~~y~~dd~~g-~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd 410 (433)
T 4hw6_A 333 RLWGPNQGIFVKNEAYAGEEDEY-DFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYD 410 (433)
T ss_dssp BCSSEEEEEEEECGGGTTSSCCE-EEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEE
T ss_pred EEcCCccEEEEccccccccCCCC-cEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEE
Confidence 123567888 5655 56666666788999985 343222221100 01236789999
Q ss_pred -CCCCcEEEEEeCCCcEEEEeCC
Q 013827 393 -EDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 393 -~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
++|. ++++-..++.|+.++++
T Consensus 411 ~~~g~-lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 411 MKRKC-FYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTTTE-EEEEEGGGTEEEEEEEC
T ss_pred CCCCE-EEEEeCCCCEEEEEecC
Confidence 5665 66666667788888764
No 279
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.27 E-value=1.8e-05 Score=77.88 Aligned_cols=241 Identities=12% Similarity=0.157 Sum_probs=129.5
Q ss_pred CC-CCcEEEEeeCCC-----------cEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEE
Q 013827 140 RE-KGNFMAVGSMEP-----------AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 207 (436)
Q Consensus 140 s~-~~~~l~~g~~dg-----------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 207 (436)
.+ ++++++.|+.+. .+.+||..+.+-..... ....+.....+++
T Consensus 194 ~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~------------------------~~~~~~~~~~~~~ 249 (656)
T 1k3i_A 194 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV------------------------TVTKHDMFCPGIS 249 (656)
T ss_dssp ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE------------------------EECSCCCSSCEEE
T ss_pred EecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc------------------------cCCCCCCcccccc
Confidence 45 888889887643 57888887644221100 0112333344567
Q ss_pred ecCCCCcEEEEEeC-CCcEEEEeCCCCeEEEEEcccCC-CeEEEEEcCCCCCEEEEEE-CC-----CcEEEEecCCCCCc
Q 013827 208 WNKEFRNILASASA-DKQVKIWDVAAGKCNLTLEHHTD-KVQAVAWNHHSPQILLSGS-FD-----RSVVMKDARISTHS 279 (436)
Q Consensus 208 ~~~~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~-~d-----~~i~~wd~~~~~~~ 279 (436)
+..++ .+++.|+. +..+.+||..+++....-..+.. .-.++...+++ ++++.|+ .+ ..+.+||..+..-.
T Consensus 250 ~~~~g-~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 250 MDGNG-QIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp ECTTS-CEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CCCCC-CEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCC-eEEEEeCcccCCcccccceEeCCCCCcce
Confidence 77876 57778774 55899999987754332211111 11345566677 7888888 34 56899998765321
Q ss_pred cce----EeeeCCeeEEEeCCCCCcEEEEEeCCC---------cEEEEeCCCCCCCCCCCCCcccEEEecc---------
Q 013827 280 GFK----WAVAADVESLAWDPHAEHSFVVSLEDG---------TIKGFDIRTAKSDPDSTSQQSSFTLHAH--------- 337 (436)
Q Consensus 280 ~~~----~~~~~~i~~~~~~~~~~~~~~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~~~~~~--------- 337 (436)
... ......-....+..++ .+++.|+.+| .+..||..+.. -......+
T Consensus 328 ~~~~~~~~p~~~~~~~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~---------w~~~~~~~~~~~~~~~~ 397 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQGLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSG---------DVKSAGKRQSNRGVAPD 397 (656)
T ss_dssp EETTSCSGGGCCCCTTGGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTC---------EEEEEEECEETTEECCC
T ss_pred eCCCccccccccccccceeecCC-ceEEEECCCCcEEEecCccceeeeecCCcc---------eeecCCccccccccCCC
Confidence 100 0000000001122223 4555555443 46778877651 11111111
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCC-----------cEEEEECCCCCceeEEeeCCCCC-cEEEEEEcCCCCcEEEEEeCC
Q 013827 338 DKAVCTISYNPLVPNLLATGSTDK-----------MVKLWDLSNNQPSCIASRNPKAG-AVFSVAFSEDSPFVLAIGGSK 405 (436)
Q Consensus 338 ~~~v~~~~~~p~~~~~l~~~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~d 405 (436)
...-.++.|...+..+++.|+.++ .|.+||..+.+...+........ .-.+++..|+++ +++.|+.+
T Consensus 398 ~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~-i~v~GG~~ 476 (656)
T 1k3i_A 398 AMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS-TFITGGQR 476 (656)
T ss_dssp CBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSC-EEEECCBS
T ss_pred CCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCC-EEEECCcc
Confidence 112244555443337888887532 67888888776433220011111 223456778998 68888754
Q ss_pred -----------CcEEEEeCCCCc
Q 013827 406 -----------GKLEIWDTLSDA 417 (436)
Q Consensus 406 -----------g~i~iwd~~~~~ 417 (436)
..+.+||..+++
T Consensus 477 ~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 477 RGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp BCCTTCCCSBCCCCEEEEGGGTE
T ss_pred cCcCcCCCCcccceEEEcCCCCc
Confidence 468999987654
No 280
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.26 E-value=0.00035 Score=67.40 Aligned_cols=59 Identities=8% Similarity=0.104 Sum_probs=38.3
Q ss_pred CCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 360 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 360 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
+|.|..||+.+++..-...... ++..-.....+. +++.++.||.|+.||..+++.+.+.
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagg-lvf~g~~dg~l~A~D~~tG~~lW~~ 523 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL---PLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKF 523 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS---CCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cceEEEEECCCCCEEEEecCCC---CCcccceEeCCC-EEEEECCCCcEEEEECCCCCEEEEe
Confidence 5789999999988432222221 111111112344 5666999999999999999988654
No 281
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.24 E-value=0.00048 Score=66.87 Aligned_cols=209 Identities=9% Similarity=0.072 Sum_probs=128.4
Q ss_pred ccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeE-EEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCC
Q 013827 200 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 278 (436)
Q Consensus 200 ~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 278 (436)
-..+.+++|++.+..++.+=...+.|..+++..... ...+...-.....+++.+.+++++++-...+.|.+.++.....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 345789999997554554545567898898876532 2333333357889999997646666667788999999876544
Q ss_pred ccceEeeeCCeeEEEeCCCCCcEEEEEeC-CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEE
Q 013827 279 SGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG 357 (436)
Q Consensus 279 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 357 (436)
.......-.....++++|.++.++++-.. .+.|...++... .........-...+.+++++++..+..+-
T Consensus 119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~---------~~~~l~~~~~~~P~Glald~~~~~LY~aD 189 (619)
T 3s94_A 119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS---------SRFIIINSEIYWPNGLTLDYEEQKLYWAD 189 (619)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC---------SCEEEECSSCSSEEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC---------ceEEEEeCCCCCCcEEEEEccCCEEEEEe
Confidence 33222334557889999976555555422 456666666543 11222223345678999999774555555
Q ss_pred eCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 358 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 358 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
...+.|..+|+.......+.. +......++++.++ .++.+-...+.|...|..+++.+..
T Consensus 190 ~~~~~I~~~~~dG~~~~~~~~--~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 190 AKLNFIHKSNLDGTNRQAVVK--GSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp TTTCCEEEESSSCCEEC-----------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred CCCCeEEEecCCCCccEEEEe--CCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEE
Confidence 557789999987654322221 11122346777666 3677666778899999988776543
No 282
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.20 E-value=0.00042 Score=61.03 Aligned_cols=194 Identities=10% Similarity=0.159 Sum_probs=121.5
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCC----CCC--EEEEEEC---CCcEEEEecCCCC-Cccce-
Q 013827 214 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH----SPQ--ILLSGSF---DRSVVMKDARIST-HSGFK- 282 (436)
Q Consensus 214 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--~l~s~~~---d~~i~~wd~~~~~-~~~~~- 282 (436)
.+++.....+-+.+||+ +++.++.+.. +.++.+..-|. +.. ++++... +++|.+|++.... .....
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~ 117 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT 117 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence 46767777789999999 7888888863 55677666552 111 3333443 5789999774221 11111
Q ss_pred -----Eeee-CCeeEEEe--CCCC-CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCE
Q 013827 283 -----WAVA-ADVESLAW--DPHA-EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL 353 (436)
Q Consensus 283 -----~~~~-~~i~~~~~--~~~~-~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 353 (436)
.... ..+..+++ +|.. ..++++...+|.+..|++....... ...+.+.++.. .+.+-.+...+.. ..
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~--~~~~lVR~f~l-gsq~EgcvvDd~~-g~ 193 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY--ISGKKVRAFKM-NSQTEGMAADDEY-GR 193 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC--EEEEEEEEEEC-SSCEEEEEEETTT-TE
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc--ccceEEEEecC-CCCcceEEEcCCC-Ce
Confidence 1111 55666777 7744 3468888899999999985321100 01244555553 3567788888877 79
Q ss_pred EEEEeCCCcEEEEECCCC---CceeEEeeC-CC-CCcEEEEEE--cCCCC-cEEEEEeCCCcEEEEeCC
Q 013827 354 LATGSTDKMVKLWDLSNN---QPSCIASRN-PK-AGAVFSVAF--SEDSP-FVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 354 l~~~~~d~~i~iwd~~~~---~~~~~~~~~-~~-~~~v~~~~~--~~~~~-~~l~s~~~dg~i~iwd~~ 414 (436)
|+.+-++..|..++.+.. ....+.... ++ ...+..|++ .++++ |+++++-.+.++.+||..
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 999999877777775522 112333332 22 236888888 45555 677766678899999997
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.14 E-value=0.00073 Score=62.60 Aligned_cols=200 Identities=7% Similarity=0.082 Sum_probs=119.0
Q ss_pred cceeEEEecCC-CCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECC---C-cEEEEecCC
Q 013827 201 DSVLGLAWNKE-FRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD---R-SVVMKDARI 275 (436)
Q Consensus 201 ~~v~~~~~~~~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~-~i~~wd~~~ 275 (436)
.....++|.|+ ....|..+...+.|+.+|+.+++...... .......+++++++ .++++.... . .+...+...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG-~lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNG-DMVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTC-CEEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCC-CEEEEcCCCCcccceEEEEECCC
Confidence 34678999984 11245555444899999998877554433 44568999999999 655544321 1 233333322
Q ss_pred CCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE-e-ccCCCeEEEEecCCCCC-
Q 013827 276 STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-H-AHDKAVCTISYNPLVPN- 352 (436)
Q Consensus 276 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~-~~~~~v~~~~~~p~~~~- 352 (436)
................++++|.+..++++-..++.|+.+|..++ .....+ . ........++|+|++ .
T Consensus 217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g---------~~~~~~~~~~~~~~~~~ia~dpdG-~~ 286 (433)
T 4hw6_A 217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG---------TLTEEEVMMDTKGSNFHIVWHPTG-DW 286 (433)
T ss_dssp TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC---------CEEEEEEECSCCSSCEEEEECTTS-SE
T ss_pred CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC---------eEEEEEeccCCCCCcccEEEeCCC-CE
Confidence 21111122234556788899954466767677888999998755 111111 1 112223469999999 6
Q ss_pred EEEEEeCCCcEEEEECCC--CCc---eeEEeeCC------------CCCcEEEEEE---------cCCCCcEEEEEeCCC
Q 013827 353 LLATGSTDKMVKLWDLSN--NQP---SCIASRNP------------KAGAVFSVAF---------SEDSPFVLAIGGSKG 406 (436)
Q Consensus 353 ~l~~~~~d~~i~iwd~~~--~~~---~~~~~~~~------------~~~~v~~~~~---------~~~~~~~l~s~~~dg 406 (436)
++++-...+.|+.++... +.. ..+....+ .-.....+++ .++|. ++++-...+
T Consensus 287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~ 365 (433)
T 4hw6_A 287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSH 365 (433)
T ss_dssp EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTT
T ss_pred EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCC
Confidence 555555678899988653 221 11111101 1123677999 67776 577666778
Q ss_pred cEEEEeC
Q 013827 407 KLEIWDT 413 (436)
Q Consensus 407 ~i~iwd~ 413 (436)
.|+.++.
T Consensus 366 ~I~~~~~ 372 (433)
T 4hw6_A 366 TVRVLTP 372 (433)
T ss_dssp EEEEECT
T ss_pred EEEEECC
Confidence 8999985
No 284
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.13 E-value=0.00099 Score=64.13 Aligned_cols=165 Identities=14% Similarity=0.088 Sum_probs=93.3
Q ss_pred cEEEEeCCCCeEEEEEcc--c--------CCCeEEEEEcCCCC--CEEEEEECCCcEEEEecCCCCCccceEeee-----
Q 013827 224 QVKIWDVAAGKCNLTLEH--H--------TDKVQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHSGFKWAVA----- 286 (436)
Q Consensus 224 ~v~vwd~~~~~~~~~~~~--~--------~~~v~~~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~----- 286 (436)
.|..+|..+++.+..++. | ..++. +....+|. ..++.++.+|.+.++|..+++.+.......
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 599999999998877752 1 12221 22223552 256778889999999998876543211000
Q ss_pred --------CCe--------------------------eEEEeCCCCCcEEEEEe--------------------------
Q 013827 287 --------ADV--------------------------ESLAWDPHAEHSFVVSL-------------------------- 306 (436)
Q Consensus 287 --------~~i--------------------------~~~~~~~~~~~~~~~~~-------------------------- 306 (436)
.++ ..++++|+.. ++++..
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR-TLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT-EEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC-EEEEEchhccccccccccccccCCccccccce
Confidence 000 2356777654 444432
Q ss_pred -----------CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCcee
Q 013827 307 -----------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 375 (436)
Q Consensus 307 -----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~ 375 (436)
.+|.|..||+.++ +.+...... ..+....+...+ .+++.++.|+.|+.+|.++++...
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG---------~~~W~~~~~-~~~~~~~~~t~g-g~v~~g~~dg~l~a~D~~tG~~lw 499 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTG---------KAKWTKWEK-FAAWGGTLYTKG-GLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTC---------CEEEEEEES-SCCCSBCEEETT-TEEEEECTTSEEEEEETTTCCEEE
T ss_pred eccCccccCCCCCCeEEEEECCCC---------CEEEEecCC-CCccceeEEECC-CEEEEEcCCCeEEEEECCCCCEEE
Confidence 3578888998877 334444322 222222222234 577789999999999999998543
Q ss_pred EEeeCCCCCcEEEEEEcCCCCcEEEEE
Q 013827 376 IASRNPKAGAVFSVAFSEDSPFVLAIG 402 (436)
Q Consensus 376 ~~~~~~~~~~v~~~~~~~~~~~~l~s~ 402 (436)
....... ..-.-+.+..+|+.++++.
T Consensus 500 ~~~~~~~-~~~~p~~~~~~G~~yv~~~ 525 (571)
T 2ad6_A 500 NFKMPSG-GIGSPMTYSFKGKQYIGSM 525 (571)
T ss_dssp EEECSSC-CCSCCEEEEETTEEEEEEE
T ss_pred EEeCCCC-cEeeeEEEEECCEEEEEEE
Confidence 3332211 1111234557776434433
No 285
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.13 E-value=0.0098 Score=59.78 Aligned_cols=204 Identities=11% Similarity=0.063 Sum_probs=122.9
Q ss_pred cceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEc-------ccCCCeEEEEEcCCCCCEEEEEECCCcEEEEec
Q 013827 201 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-------HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 273 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~ 273 (436)
..|.++...++| .|..++.++-|..||..+++...... .....|.++...+++ .+. .++.+ -+.+||.
T Consensus 163 ~~i~~i~~d~~g--~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~lw-igt~~-Gl~~~d~ 237 (781)
T 3v9f_A 163 EQTWTATEAEDG--KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNG-NIW-IGTSK-GLALFNA 237 (781)
T ss_dssp CCEEEEEEEETT--EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTC-CEE-EEETT-EEEEEET
T ss_pred cceEEEEECCCC--CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCC-CEE-EEeCC-cHheECC
Confidence 458888887775 45556666568899988765432211 113568899888887 544 45555 6888997
Q ss_pred CCCCCccceE-------eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEE-------EeccCC
Q 013827 274 RISTHSGFKW-------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT-------LHAHDK 339 (436)
Q Consensus 274 ~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-------~~~~~~ 339 (436)
.+........ .....|.++...+++ .+..|+..+-|.++|..+........ ..... ......
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~--~~f~~~~~~~~~~~l~~~ 313 (781)
T 3v9f_A 238 NTETFTNFHNNPGNIHGALSSYIFSIKQLKDN--KLWIATELNGIMILDLQQNQFLLPEQ--IRFEFIREGDNNYSLSNA 313 (781)
T ss_dssp TTTEEEC-----------CCCCEEEEEECTTS--EEEEEESSSCEEEEETTCC-----------CEEECBCSSTTSBSSS
T ss_pred CCCcEEEEEcCCCccccccCceEEEEEECCCC--CEEEEeCCCCeEEECCCCCeeeeeec--cccccccCCCCCCCCCCC
Confidence 6654332111 123568888888765 46677775678889987653210000 00000 011345
Q ss_pred CeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEee-------CCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 013827 340 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR-------NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 340 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 412 (436)
.|.++...+++ . |-.|+.++-|..++............ ......|.++...++|. +. .|+.++-|..|+
T Consensus 314 ~v~~i~~D~~g-~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lW-igt~~~Gl~~~~ 389 (781)
T 3v9f_A 314 SARYIFQDSFN-N-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LW-IGTDGGGINVFE 389 (781)
T ss_dssp CEEEEEECSSC-C-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EE-EEEBSSCEEEEE
T ss_pred eEEEEEEeCCC-C-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EE-EEeCCCcEEEEE
Confidence 68899888876 3 55567677799998876553222110 11234699999999887 34 466666788898
Q ss_pred CCCCc
Q 013827 413 TLSDA 417 (436)
Q Consensus 413 ~~~~~ 417 (436)
..++.
T Consensus 390 ~~~~~ 394 (781)
T 3v9f_A 390 NGKRV 394 (781)
T ss_dssp TTEEE
T ss_pred CCCCe
Confidence 76543
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.11 E-value=0.0015 Score=65.09 Aligned_cols=162 Identities=10% Similarity=-0.015 Sum_probs=103.1
Q ss_pred ccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECC-CcEEEEecCCCCC
Q 013827 200 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-RSVVMKDARISTH 278 (436)
Q Consensus 200 ~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~ 278 (436)
......|++.+.+++++++-...+.|.+.++........+.........|++.|.++.++++-... +.|...++.....
T Consensus 470 l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~ 549 (791)
T 3m0c_C 470 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 549 (791)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce
Confidence 345678888887666777777788999999886554444443445689999999863544444333 6788888875443
Q ss_pred ccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec--cCCCeEEEEecCCCCCEEEE
Q 013827 279 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNPLVPNLLAT 356 (436)
Q Consensus 279 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~ 356 (436)
.......-.....|++++.+..++++-...+.|..+++... .....+.. .-.....|++.. ..++++
T Consensus 550 ~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~---------~~~~v~~~~~~l~~P~glav~~--~~lYwt 618 (791)
T 3m0c_C 550 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG---------NRKTILEDEKRLAHPFSLAVFE--DKVFWT 618 (791)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------SCEEEEECTTTTSSEEEEEEET--TEEEEE
T ss_pred EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC---------ceEEEecCCCccCCCCEEEEeC--CEEEEE
Confidence 33222223568899999877666676667788999998654 21222222 123345666643 245555
Q ss_pred EeCCCcEEEEECCCCC
Q 013827 357 GSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 357 ~~~d~~i~iwd~~~~~ 372 (436)
-...+.|...+..+++
T Consensus 619 D~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 619 DIINEAIFSANRLTGS 634 (791)
T ss_dssp ETTTTEEEEEETTTCC
T ss_pred ECCCCEEEEEeCCCCc
Confidence 5556788888876654
No 287
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.10 E-value=0.0026 Score=53.79 Aligned_cols=190 Identities=8% Similarity=0.039 Sum_probs=115.5
Q ss_pred CCCCc-EEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEE
Q 013827 140 REKGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 218 (436)
Q Consensus 140 s~~~~-~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 218 (436)
+|+++ ++++...++.|...|.. ++...... +.+ ....-.|++.+++ .++++
T Consensus 35 ~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-------------------------l~g-~~D~EGIa~~~~g-~~~vs 86 (255)
T 3qqz_A 35 SAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-------------------------LDF-VKDLETIEYIGDN-QFVIS 86 (255)
T ss_dssp ETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-------------------------CSS-CSSEEEEEECSTT-EEEEE
T ss_pred eCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-------------------------cCC-CCChHHeEEeCCC-EEEEE
Confidence 56554 55567778888888886 43332211 112 2456788888885 46666
Q ss_pred EeCCCcEEEEeCCCCeE---EEEEc------ccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC---CCccceE---
Q 013827 219 ASADKQVKIWDVAAGKC---NLTLE------HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS---THSGFKW--- 283 (436)
Q Consensus 219 ~~~dg~v~vwd~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~--- 283 (436)
.-.++.+.++++..... +.... ..+.....++|+|.+ ..|.++.+.....+|.+... .......
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~ 165 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYKVNGLLSSNELHISKDKA 165 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEEEESTTCSSCCEEEECHH
T ss_pred ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCC-CEEEEEECcCCceEEEEcccccCCceeeecchh
Confidence 65678899998765432 22221 123456899999998 55555655555555555411 1111110
Q ss_pred ----eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec-c------CCCeEEEEecCCCCC
Q 013827 284 ----AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-H------DKAVCTISYNPLVPN 352 (436)
Q Consensus 284 ----~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~------~~~v~~~~~~p~~~~ 352 (436)
.....+.+++++|....+++.+..+..+..+|.... ......+.. . -...-.|+|.++| +
T Consensus 166 ~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--------~~~~~~L~~g~~~l~~~~~qpEGia~d~~G-~ 236 (255)
T 3qqz_A 166 LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE--------VIGEMSLTKGSRGLSHNIKQAEGVAMDASG-N 236 (255)
T ss_dssp HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC--------EEEEEECSTTGGGCSSCCCSEEEEEECTTC-C
T ss_pred hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC--------EEEEEEcCCccCCcccccCCCCeeEECCCC-C
Confidence 012357899999988888899999999999997643 111222221 1 1356899999998 6
Q ss_pred EEEEEeCCCcEEEEEC
Q 013827 353 LLATGSTDKMVKLWDL 368 (436)
Q Consensus 353 ~l~~~~~d~~i~iwd~ 368 (436)
|+..++.+.++.|.-
T Consensus 237 -lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 237 -IYIVSEPNRFYRFTP 251 (255)
T ss_dssp -EEEEETTTEEEEEEC
T ss_pred -EEEEcCCceEEEEEe
Confidence 444477776666643
No 288
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.07 E-value=0.00085 Score=62.14 Aligned_cols=157 Identities=10% Similarity=0.135 Sum_probs=98.8
Q ss_pred cceeEEEecC-CCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEEC-CC----cEEEEecC
Q 013827 201 DSVLGLAWNK-EFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-DR----SVVMKDAR 274 (436)
Q Consensus 201 ~~v~~~~~~~-~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d~----~i~~wd~~ 274 (436)
.....|+++| ++. .|+.+...+.|+.+|+.+++...... .......++|++++ +.|+.+.. ++ .+...+..
T Consensus 137 ~~P~~lavdp~~~g-~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G-~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 137 GGAVWLSFDPKNHN-HLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEA-DSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp SCCCEEEEETTEEE-EEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTS-SEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCCCEEEECCCCCC-eEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCC-CEEEEEeCCCCcccceEEEEeCC
Confidence 3567899998 333 55555555889999998776544443 45568899999999 64444443 22 23334433
Q ss_pred CCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEe-ccCCCeEEEEecCCCCC-
Q 013827 275 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCTISYNPLVPN- 352 (436)
Q Consensus 275 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~- 352 (436)
.................++++|++..++++-..++.|..++.... ....... ........++|+|++ +
T Consensus 214 g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~---------~~~~~~~~~~~~~P~gia~~pdG-~~ 283 (430)
T 3tc9_A 214 SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ---------ETTPLFTIQDSGWEFHIQFHPSG-NY 283 (430)
T ss_dssp GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT---------EEEEEEECSSSSCCEEEEECTTS-SE
T ss_pred CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC---------cEEEEEEcCCCCcceeEEEcCCC-CE
Confidence 221111122234557888999955567777778889999998754 1111111 112346789999999 6
Q ss_pred EEEEEeCCCcEEEEECCC
Q 013827 353 LLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 353 ~l~~~~~d~~i~iwd~~~ 370 (436)
++++-...+.|..++...
T Consensus 284 lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 284 AYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEEEETTTTEEEEEEEET
T ss_pred EEEEECCCCEEEEEeCCc
Confidence 555555678899987653
No 289
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.04 E-value=0.0028 Score=55.32 Aligned_cols=204 Identities=9% Similarity=0.019 Sum_probs=123.6
Q ss_pred cccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEE-Ecc----cC--CCeEEEEE---cCCCCCEEEEEEC----
Q 013827 199 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT-LEH----HT--DKVQAVAW---NHHSPQILLSGSF---- 264 (436)
Q Consensus 199 h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~-~~~----~~--~~v~~~~~---~~~~~~~l~s~~~---- 264 (436)
...--.+++|++....++++.-..++|..||...+..... +.+ .. ..+..|.| .|++ .++++...
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~af 89 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKSF 89 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTTT
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCC-cEEEEEcccccc
Confidence 3344567899886444555555789999999986643333 222 11 13579999 6886 77775442
Q ss_pred ---------CCcEEEEecC---CCCCccceE--e-----------eeCCeeEEEeCCCCCcEEEEEeCC-CcEEEEeCCC
Q 013827 265 ---------DRSVVMKDAR---ISTHSGFKW--A-----------VAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRT 318 (436)
Q Consensus 265 ---------d~~i~~wd~~---~~~~~~~~~--~-----------~~~~i~~~~~~~~~~~~~~~~~~d-g~i~i~d~~~ 318 (436)
+..|..+|+. +++...... . .......++..++| +..++++.. +.|..++...
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTTS
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCCC
Confidence 6779999998 665543221 0 11247899999987 677777777 7776666553
Q ss_pred CCCCCCCCCCcccEEE------eccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCceeEEee-CC---CCCcEEE
Q 013827 319 AKSDPDSTSQQSSFTL------HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR-NP---KAGAVFS 388 (436)
Q Consensus 319 ~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~---~~~~v~~ 388 (436)
.. ...+ .......+.|+++|++ ++|++....+.+..+|+.......+... .+ .......
T Consensus 169 ~~----------~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dg 237 (334)
T 2p9w_A 169 KT----------VSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEK 237 (334)
T ss_dssp CC----------EEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEE
T ss_pred CE----------EeeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccc
Confidence 21 1111 1112346799999999 7777766699999999985332012111 01 1122344
Q ss_pred E-EEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 389 V-AFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 389 ~-~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
| .--.+|+.+|++....+.+.+.+-..
T Consensus 238 ilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 238 IVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred ccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 3 33356774466666677666666544
No 290
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=0.0027 Score=59.18 Aligned_cols=212 Identities=8% Similarity=0.057 Sum_probs=120.6
Q ss_pred cceeEEEe-------cCCCCcEEEEEeCCC-------cEEEEeCCC-CeEE-----EEEcccCCCeEEEEEcCCCCCEEE
Q 013827 201 DSVLGLAW-------NKEFRNILASASADK-------QVKIWDVAA-GKCN-----LTLEHHTDKVQAVAWNHHSPQILL 260 (436)
Q Consensus 201 ~~v~~~~~-------~~~~~~~l~s~~~dg-------~v~vwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~ 260 (436)
.....++| +++|. .|+.+...+ .|.+.+... +... ..+.... ....++++|++..+++
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~-~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYv 263 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAE-YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYF 263 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTC-EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEE
T ss_pred CCCcEEEEeecccccCCCCC-EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEE
Confidence 45889999 99975 455554433 266665333 2221 2222222 3457788996647777
Q ss_pred EEECCCcEEEEecC-------CCCC-----------ccceEee--eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCC
Q 013827 261 SGSFDRSVVMKDAR-------ISTH-----------SGFKWAV--AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 320 (436)
Q Consensus 261 s~~~d~~i~~wd~~-------~~~~-----------~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 320 (436)
+-..++.|..+|+. ++.. ....... ......++|+|++..++++-.....|+.++.....
T Consensus 264 td~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~ 343 (496)
T 3kya_A 264 NSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIK 343 (496)
T ss_dssp EETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTT
T ss_pred EECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCc
Confidence 77788899999997 4443 0011222 24468999999985456666778889886654321
Q ss_pred CCCCCCCCcccEEEecc---------------CCCeE-EEEec-------CCCCCEEEEEeCCCcEEEEECCCCCceeEE
Q 013827 321 SDPDSTSQQSSFTLHAH---------------DKAVC-TISYN-------PLVPNLLATGSTDKMVKLWDLSNNQPSCIA 377 (436)
Q Consensus 321 ~~~~~~~~~~~~~~~~~---------------~~~v~-~~~~~-------p~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 377 (436)
.. ......+.+. -.... .+... +.+ .++++-....+|+.++. ++....+.
T Consensus 344 ~~-----~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~~-~G~v~Tia 416 (496)
T 3kya_A 344 KE-----FITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVTP-EGIVSTYA 416 (496)
T ss_dssp TE-----ECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEECT-TCBEEEEE
T ss_pred ce-----ecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEEEeC-CCCEEEEe
Confidence 00 0000111111 01233 44443 344 56666666788999984 44432222
Q ss_pred eeC-----------C----------CCCcEEEEEEcCC-CCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 378 SRN-----------P----------KAGAVFSVAFSED-SPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 378 ~~~-----------~----------~~~~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
... + .-.....|+++++ |. ++++=..+..|+.+++.....+...
T Consensus 417 G~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~-lyVaD~~N~rIrki~~~~~~~~~~~ 482 (496)
T 3kya_A 417 GRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEM-FYVHDQVGHTIRTISMEQEENVAGD 482 (496)
T ss_dssp ESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTE-EEEEETTTTEEEEEEECCCC-----
T ss_pred cccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCE-EEEEeCCCCEEEEEECCCCcccccC
Confidence 110 1 1124678999997 65 6676667789999999887776543
No 291
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.98 E-value=3.4e-05 Score=76.22 Aligned_cols=159 Identities=11% Similarity=-0.025 Sum_probs=98.2
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECC-CcEEEEecCCCCCcc
Q 013827 202 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-RSVVMKDARISTHSG 280 (436)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~ 280 (436)
....|++.+.+..++++-...+.|.+.++........+.........++++|.++.++++-... +.|...++.......
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~ 533 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 533 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE
Confidence 3567888765555666656678899999876544433333334567889999764555544333 678887776443322
Q ss_pred ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec---cCCCeEEEEecCCCCCEEEEE
Q 013827 281 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA---HDKAVCTISYNPLVPNLLATG 357 (436)
Q Consensus 281 ~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~~~ 357 (436)
.....-.....++|+|++..++++-...+.|..+++.... ...+.. .......|++..+ .++++.
T Consensus 534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~----------~~~~~~~~~~~~~P~glavd~~--~lywtd 601 (699)
T 1n7d_A 534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN----------RKTILEDEKRLAHPFSLAVFED--KVFWTD 601 (699)
T ss_dssp ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC----------CEEECCCSSSCSSCCCCEEETT--EEEEEC
T ss_pred EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc----------eEEEEecCCcCCCceEeEEECC--EEEEEe
Confidence 1112234577899999877788887888899999986431 112211 1123345555442 455566
Q ss_pred eCCCcEEEEECCCCC
Q 013827 358 STDKMVKLWDLSNNQ 372 (436)
Q Consensus 358 ~~d~~i~iwd~~~~~ 372 (436)
...+.|..++..+++
T Consensus 602 ~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 602 IINEAIFSANRLTGS 616 (699)
T ss_dssp STTTCEEEEETTTEE
T ss_pred CCCCeEEEEEccCCC
Confidence 667889999987765
No 292
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.93 E-value=0.004 Score=58.06 Aligned_cols=216 Identities=12% Similarity=0.063 Sum_probs=124.2
Q ss_pred ceeEEEecCC-CCcEEEEEeCCCcEEEEeCCCCeEEEEEccc---CCCeEEEEE-------cCCCCCEEEEEECCC-c--
Q 013827 202 SVLGLAWNKE-FRNILASASADKQVKIWDVAAGKCNLTLEHH---TDKVQAVAW-------NHHSPQILLSGSFDR-S-- 267 (436)
Q Consensus 202 ~v~~~~~~~~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~~l~s~~~d~-~-- 267 (436)
....|+|.|. +.+++++....+.|++.|++++.....+... ......++| ++++ ..|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G-~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEA-EYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTT-CEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCC-CEEEEEeCCCCCcc
Confidence 4678999983 4445555555578999999887765554322 235889999 9999 5455554443 2
Q ss_pred ----EEEEecCC-CCCcc----ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCC-------CCCCCCCCCC----
Q 013827 268 ----VVMKDARI-STHSG----FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR-------TAKSDPDSTS---- 327 (436)
Q Consensus 268 ----i~~wd~~~-~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~-------~~~~~~~~~~---- 327 (436)
|.+.+... +.... .....-.....++++|++..++++-..++.|..+|+. ++........
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 66665333 12210 1222334567888999776788888889999999997 4421000000
Q ss_pred -CcccEEEeccCCCeEEEEecCCCCCE-EEEEeCCCcEEEEECCC--CCc---eeEEeeCCCC------------CcEE-
Q 013827 328 -QQSSFTLHAHDKAVCTISYNPLVPNL-LATGSTDKMVKLWDLSN--NQP---SCIASRNPKA------------GAVF- 387 (436)
Q Consensus 328 -~~~~~~~~~~~~~v~~~~~~p~~~~~-l~~~~~d~~i~iwd~~~--~~~---~~~~~~~~~~------------~~v~- 387 (436)
...+... ........++|+|++ .. +++-+....|+.++... ... ..+....+.. ....
T Consensus 299 ~~~~l~~~-~~~~~p~~ia~~p~G-~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~ 376 (496)
T 3kya_A 299 TFKQLFTI-ADPSWEFQIFIHPTG-KYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ 376 (496)
T ss_dssp TEEEEEEC-SSSSCCEEEEECTTS-SEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEE
T ss_pred ccceeEec-CCCCCceEEEEcCCC-CEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeE
Confidence 0011111 123446789999999 64 44445677888866543 211 1122111111 1234
Q ss_pred EEEEc-------CCCCcEEEEEeCCCcEEEEeCCCCccccccc
Q 013827 388 SVAFS-------EDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 423 (436)
Q Consensus 388 ~~~~~-------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (436)
.++.. +++. ++++=...+.|+.++ .++ .+.+..
T Consensus 377 gv~vd~~~~~~~~~g~-lyVaD~~N~rIr~i~-~~G-~v~Tia 416 (496)
T 3kya_A 377 GVFVKNPDYTGEEEYD-FYFVDRLNFCVRKVT-PEG-IVSTYA 416 (496)
T ss_dssp EEEEECTTCCSSCCEE-EEEEEGGGTEEEEEC-TTC-BEEEEE
T ss_pred EEEEccccccccCCCe-EEEEECCCCEEEEEe-CCC-CEEEEe
Confidence 45554 4555 566666778899998 444 344443
No 293
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.92 E-value=0.016 Score=56.33 Aligned_cols=203 Identities=5% Similarity=0.032 Sum_probs=125.0
Q ss_pred cceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc
Q 013827 201 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG 280 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 280 (436)
..+.+++|.+.+..++.+-...+.|+.+++........+...-.....+++.+.+.+++++-+..+.|.+.++.......
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~ 428 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI 428 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence 45778999986544555555678899999876544334443335677899987664667776677899999987654322
Q ss_pred ceEeeeCCeeEEEeCCCCCcEEEEEeC-CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeC
Q 013827 281 FKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 359 (436)
Q Consensus 281 ~~~~~~~~i~~~~~~~~~~~~~~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 359 (436)
.....-.....++++|..+.++++-.. .+.|...++... .........-...+.+++++.+..+..+-+.
T Consensus 429 l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~---------~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~ 499 (619)
T 3s94_A 429 LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS---------DRVVLVNTSLGWPNGLALDYDEGKIYWGDAK 499 (619)
T ss_dssp EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---------SCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC---------ccEEEEeCCCCCCeeeEEcccCCEEEEEECC
Confidence 121223568899999975455555432 356666666533 1122223334567899999877344444445
Q ss_pred CCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 360 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 360 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
.+.|..+++.......+.. .......+++...+ +++.+-...+.|...|..++
T Consensus 500 ~~~I~~~~~dG~~~~~~~~--~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 500 TDKIEVMNTDGTGRRVLVE--DKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp TTEEEEEESSSCCCEEEEE--CCCCSSCCEEEETT--EEEEECTTSSCEEEEESSSC
T ss_pred CCEEEEEecCCCceEEEec--cCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCC
Confidence 6789999987655333322 11222345666544 46666556677888887776
No 294
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.87 E-value=0.0066 Score=54.51 Aligned_cols=233 Identities=11% Similarity=0.088 Sum_probs=117.7
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCC---CCcEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---FRNIL 216 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~l 216 (436)
.|+|+++++ ..+|.|++++ + ++ ...... .. ...........|+|+|+ +..+.
T Consensus 39 ~pdG~l~V~-e~~g~I~~i~-~-g~-~~~~~~------------------~~---v~~~g~~~p~gia~~pdf~~~g~lY 93 (352)
T 2ism_A 39 LPDGGMLIA-ERPGRIRLFR-E-GR-LSTYAE------------------LS---VYHRGESGLLGLALHPRFPQEPYVY 93 (352)
T ss_dssp CTTSCEEEE-ETTTEEEEEE-T-TE-EEEEEE------------------CC---CCCSTTCSEEEEEECTTTTTSCEEE
T ss_pred cCCCeEEEE-eCCCeEEEEE-C-CC-ccEeec------------------ce---EeecCCCCceeEEECCCCCCCCEEE
Confidence 789986655 5569999998 2 21 111000 00 11122456789999998 44444
Q ss_pred EEEeCC-----CcEEEEeCCCCe-----EE-EEEc---ccCCCeEEEEEcCCCCCEEEEEEC-------------CCcEE
Q 013827 217 ASASAD-----KQVKIWDVAAGK-----CN-LTLE---HHTDKVQAVAWNHHSPQILLSGSF-------------DRSVV 269 (436)
Q Consensus 217 ~s~~~d-----g~v~vwd~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~~l~s~~~-------------d~~i~ 269 (436)
++-... +.|..++...+. .+ ..+. ........++|.|+| .++++.+. .|.|.
T Consensus 94 v~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ 172 (352)
T 2ism_A 94 AYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKIL 172 (352)
T ss_dssp EEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEE
T ss_pred EEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEE
Confidence 444432 568888876431 11 1232 111234689999999 66666432 24566
Q ss_pred EEecCCCC-----------CccceEeee-CCeeEEEeCCCCCcEEEEEeCCCcE------EEEeCCCCCCC---------
Q 013827 270 MKDARIST-----------HSGFKWAVA-ADVESLAWDPHAEHSFVVSLEDGTI------KGFDIRTAKSD--------- 322 (436)
Q Consensus 270 ~wd~~~~~-----------~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~dg~i------~i~d~~~~~~~--------- 322 (436)
-++....- ......... .....++|+|+...++++-.....+ .+.-+..+...
T Consensus 173 ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~ 252 (352)
T 2ism_A 173 RLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRG 252 (352)
T ss_dssp EECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCC
T ss_pred EEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCC
Confidence 66654310 011122221 3367889999444555554433331 12222222100
Q ss_pred CCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCce----eEEeeCCCCCcEEEEEEcCCCCcE
Q 013827 323 PDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS----CIASRNPKAGAVFSVAFSEDSPFV 398 (436)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~ 398 (436)
.......+...+. +......++|. ++ .++++.-..+.|...++...... ....+-.....+..+++.|||. +
T Consensus 253 ~~~~~~~p~~~~~-~~~ap~G~~~~-~G-~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~-l 328 (352)
T 2ism_A 253 NDPRYRDPLYFWP-QGFPPGNLAFF-RG-DLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGA-L 328 (352)
T ss_dssp CCTTSCCCSEECT-TCCCEEEEEEE-TT-EEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSC-E
T ss_pred CCCCCcCCeEecC-CCCCCcceEEE-CC-EEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCc-E
Confidence 0000012334442 23345677873 44 56666556677887777644310 0111112235789999999998 4
Q ss_pred EEEE
Q 013827 399 LAIG 402 (436)
Q Consensus 399 l~s~ 402 (436)
+++.
T Consensus 329 yv~~ 332 (352)
T 2ism_A 329 YVTT 332 (352)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 295
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.85 E-value=0.012 Score=56.68 Aligned_cols=167 Identities=12% Similarity=0.101 Sum_probs=94.2
Q ss_pred CcEEEEeCCCCeEEEEEcc--cC--------CCeEEEEEc-CCCC--CEEEEEECCCcEEEEecCCCCCccceEeee---
Q 013827 223 KQVKIWDVAAGKCNLTLEH--HT--------DKVQAVAWN-HHSP--QILLSGSFDRSVVMKDARISTHSGFKWAVA--- 286 (436)
Q Consensus 223 g~v~vwd~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~--- 286 (436)
+.|..+|..+++.+..++. |. .++. +... .+|. ..++.++.+|.++++|.++++.+.......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 5899999999998887742 21 1222 2221 3452 367889999999999998876542111100
Q ss_pred ----------CC--------------------------------eeEEEeCCCCCcEEEEEe------------------
Q 013827 287 ----------AD--------------------------------VESLAWDPHAEHSFVVSL------------------ 306 (436)
Q Consensus 287 ----------~~--------------------------------i~~~~~~~~~~~~~~~~~------------------ 306 (436)
.+ -..++++|+...+++...
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 00 013456665433333221
Q ss_pred --------------CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 013827 307 --------------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 372 (436)
Q Consensus 307 --------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~ 372 (436)
.+|.|..||+.++ +.+....... ++..-.....+ .+++.++.|+.++.||.++++
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG---------~~~W~~~~~~-~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSG---------KVVWEHKEHL-PLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTC---------CEEEEEEESS-CCCSCCEEETT-TEEEEECTTSEEEEEETTTCC
T ss_pred eeccceeecCCCCCCcceEEEEECCCC---------CEEEEecCCC-CCcccceEeCC-CEEEEECCCCcEEEEECCCCC
Confidence 2578888998887 3344443221 22111111124 678889999999999999998
Q ss_pred ceeEEeeCCCCCcEEEEEEcCCCCcEEEEE
Q 013827 373 PSCIASRNPKAGAVFSVAFSEDSPFVLAIG 402 (436)
Q Consensus 373 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 402 (436)
..-....... ..-.-+.|..+|+..+++.
T Consensus 519 ~lW~~~~~~g-~~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 519 ELWKFQTGSG-IVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp EEEEEECSSC-CCSCCEEEEETTEEEEEEE
T ss_pred EEEEecCCCC-cccCceEEEECCEEEEEEE
Confidence 5433333221 1111256667886434433
No 296
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.74 E-value=0.038 Score=53.70 Aligned_cols=206 Identities=8% Similarity=0.038 Sum_probs=128.9
Q ss_pred cceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcc------cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC
Q 013827 201 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 274 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 274 (436)
..+.+++|.+.+..++.+=...+.|+.+++........+.. ....+..+++...+.+++++-+..+.|.+.++.
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~ 419 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD 419 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence 45788999987544444545567888888765443333332 234678999999875666777778889999886
Q ss_pred CCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCC
Q 013827 275 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 352 (436)
Q Consensus 275 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 352 (436)
...........-.....++++|..+.++++-.... .|...++... .........-...+.+++.+.. .
T Consensus 420 G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~---------~~~~l~~~~l~~P~gla~D~~~-~ 489 (628)
T 4a0p_A 420 GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGT---------EREVLFFSGLSKPIALALDSRL-G 489 (628)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSC---------SCEEEECSSCSCEEEEEEETTT-T
T ss_pred CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCC---------CcEEEEeccCCCccEEEEeCCC-C
Confidence 44322212223356899999996556666644333 4555555432 1122222234567899999987 4
Q ss_pred EEEEE-eCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccc
Q 013827 353 LLATG-STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 420 (436)
Q Consensus 353 ~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (436)
.|+.+ +..+.|...++.......+. ........+++... + +++.+-...+.|...|..+++...
T Consensus 490 ~LYw~D~~~~~I~~~~~dG~~r~~~~--~~~~~~P~glav~~-~-~ly~tD~~~~~i~~~~k~~G~~~~ 554 (628)
T 4a0p_A 490 KLFWADSDLRRIESSDLSGANRIVLE--DSNILQPVGLTVFE-N-WLYWIDKQQQMIEKIDMTGREGRT 554 (628)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEE--CSSCSCEEEEEEET-T-EEEEEETTTTEEEEEETTSSSCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCceEEEE--cCCCCCcEEEEEEC-C-EEEEEECCCCeEEEEECcCCCCcE
Confidence 55544 44688999999765532222 12334567888766 3 367766677888888888776543
No 297
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.64 E-value=0.029 Score=49.69 Aligned_cols=195 Identities=10% Similarity=0.038 Sum_probs=101.8
Q ss_pred cceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEE-EEcccCCCeEEEEEcCCCCCEEEEEECCCcEEE-EecCCCCC
Q 013827 201 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM-KDARISTH 278 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~-wd~~~~~~ 278 (436)
..+..+.+.+++ ..++.+ .+|.|..- .+.++.-. ........+..+.+.+++ .+++.+ .+|.+.. .|-....-
T Consensus 122 ~~~~~i~~~~~~-~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~-~~~~~g-~~G~~~~S~d~gG~tW 196 (327)
T 2xbg_A 122 GSPRLIKALGNG-SAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSG-EYVAVS-SRGSFYSTWEPGQTAW 196 (327)
T ss_dssp SCEEEEEEEETT-EEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTS-CEEEEE-TTSSEEEEECTTCSSC
T ss_pred CCeEEEEEECCC-CEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCC-cEEEEE-CCCcEEEEeCCCCCce
Confidence 346777777664 355544 45654321 22343222 223455678999999987 666555 4454433 33211110
Q ss_pred ccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE-eccCCCeEEEEecCCCCCEEEEE
Q 013827 279 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATG 357 (436)
Q Consensus 279 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~ 357 (436)
..........+..+.+.+++ . ++..+.+|.+++.+...+.. ...+..- ......+..+.+.+++ .+++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~g-~-~~~~~~~G~~~~s~~D~G~t------W~~~~~~~~~~~~~~~~v~~~~~~-~~~~~g 267 (327)
T 2xbg_A 197 EPHNRTTSRRLHNMGFTPDG-R-LWMIVNGGKIAFSDPDNSEN------WGELLSPLRRNSVGFLDLAYRTPN-EVWLAG 267 (327)
T ss_dssp EEEECCSSSCEEEEEECTTS-C-EEEEETTTEEEEEETTEEEE------ECCCBCTTSSCCSCEEEEEESSSS-CEEEEE
T ss_pred eECCCCCCCccceeEECCCC-C-EEEEeCCceEEEecCCCCCe------eEeccCCcccCCcceEEEEecCCC-EEEEEe
Confidence 11111234567888888876 3 44555678777764221100 0001000 0122357889998865 555554
Q ss_pred eCCCcEEEEECCCCCceeEEe-eCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 013827 358 STDKMVKLWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 413 (436)
Q Consensus 358 ~~d~~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 413 (436)
.++.| ++....++.-.... .......+.++.|.+++. ++.++.+|.|.-++-
T Consensus 268 -~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~--~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 268 -GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ--GFILGQKGILLRYVT 320 (327)
T ss_dssp -STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE--EEEECSTTEEEEECC
T ss_pred -CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc--eEEEcCCceEEEEcC
Confidence 46766 44444443211111 112234678888876664 555778898877664
No 298
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.63 E-value=0.033 Score=49.89 Aligned_cols=237 Identities=12% Similarity=0.081 Sum_probs=118.3
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCC---CCcEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---FRNIL 216 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~l 216 (436)
.|+|++|.++...|.|++++.+.. ..... ................|+|+|+ +..+.
T Consensus 26 ~pdG~~l~V~e~~G~i~~~~~~g~-~~~~~--------------------~~~~~v~~~g~~g~~gia~~pdf~~~g~lY 84 (353)
T 2g8s_A 26 LPDNHGMLITLRGGELRHWQAGKG-LSAPL--------------------SGVPDVWAHGQGGLLDVVLAPDFAQSRRIW 84 (353)
T ss_dssp CSTTCCEEEEETTTEEEEEETTTE-ECCCC--------------------BSCCCCCCSTTCSEEEEEECTTHHHHCEEE
T ss_pred cCCCCEEEEEeCCceEEEEeCCCc-eeeEe--------------------cCCcccccCCCCCceeEEECCCCCCCCEEE
Confidence 789983444456799999885321 11000 0000011122345789999995 33344
Q ss_pred EEEeC-------CCcEEEEeCCCC--e--EEEE-Ecc------cCCCeEEEEEcCCCCCEEEEEEC-------------C
Q 013827 217 ASASA-------DKQVKIWDVAAG--K--CNLT-LEH------HTDKVQAVAWNHHSPQILLSGSF-------------D 265 (436)
Q Consensus 217 ~s~~~-------dg~v~vwd~~~~--~--~~~~-~~~------~~~~v~~~~~~~~~~~~l~s~~~-------------d 265 (436)
++-+. ...|..+++... + .... +.. .......|.|.|+| .++++.+. .
T Consensus 85 v~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~ 163 (353)
T 2g8s_A 85 LSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQ 163 (353)
T ss_dssp EEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCT
T ss_pred EEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCC
Confidence 44332 235666666432 1 1111 111 11124579999999 66665543 2
Q ss_pred CcEEEEecCCCCC-----------ccceEeee-CCeeEEEeCCCCCcEEEEEe-CCCcEEEEeCCCCCCC----------
Q 013827 266 RSVVMKDARISTH-----------SGFKWAVA-ADVESLAWDPHAEHSFVVSL-EDGTIKGFDIRTAKSD---------- 322 (436)
Q Consensus 266 ~~i~~wd~~~~~~-----------~~~~~~~~-~~i~~~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~---------- 322 (436)
|.|.-++....-. ........ .....++|+|....++++-. .++.=.|.-+..+...
T Consensus 164 g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~ 243 (353)
T 2g8s_A 164 GKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGIN 243 (353)
T ss_dssp TEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBC
T ss_pred eEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCC
Confidence 4566666653210 11122222 34788999994334444432 2222222222222110
Q ss_pred ------------CCCCCCcccEEEeccCCCeEEEEecC-------CCCCEEEEEeCCCcEEEEECCCCCceeEEee-CCC
Q 013827 323 ------------PDSTSQQSSFTLHAHDKAVCTISYNP-------LVPNLLATGSTDKMVKLWDLSNNQPSCIASR-NPK 382 (436)
Q Consensus 323 ------------~~~~~~~~~~~~~~~~~~v~~~~~~p-------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~ 382 (436)
.......+...+..| ..+..+.|.+ ++ .++++.-..+.|...++..++......+ ...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 321 (353)
T 2g8s_A 244 YSGFKIPEAKGEIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNGDKVTEDGRILTDR 321 (353)
T ss_dssp TTSSCCTTCCBSSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEETTEEEEEEEESGGG
T ss_pred CCCCccCcccCCCCCCccCCeEEeCCC-cCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCCCeEeeeEEcccCC
Confidence 000011233444333 4567788864 34 6666666678888888775432222222 222
Q ss_pred CCcEEEEEEcCCCCcEEEE
Q 013827 383 AGAVFSVAFSEDSPFVLAI 401 (436)
Q Consensus 383 ~~~v~~~~~~~~~~~~l~s 401 (436)
...+..+++.|||. ++++
T Consensus 322 ~~rp~~v~~~pdG~-lyv~ 339 (353)
T 2g8s_A 322 GQRIRDVRTGPDGY-LYVL 339 (353)
T ss_dssp CCCEEEEEECTTSC-EEEE
T ss_pred CCceeEEEECCCCc-EEEE
Confidence 34789999999998 5553
No 299
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.60 E-value=0.0096 Score=52.00 Aligned_cols=147 Identities=16% Similarity=0.189 Sum_probs=74.0
Q ss_pred cEEEEEeCC-----CcEEEEeCCCCeEEEE--EcccCCCeEEEEEcCCCCCEEEEEECC-----CcEEEEecCCCCCccc
Q 013827 214 NILASASAD-----KQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARISTHSGF 281 (436)
Q Consensus 214 ~~l~s~~~d-----g~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~ 281 (436)
.+++.|+.+ ..+.+||+.+.+-... +.........+.+ ++ .+++.|+.+ ..+..||+.+..-...
T Consensus 114 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 190 (301)
T 2vpj_A 114 MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SG-VIYCLGGYDGLNILNSVEKYDPHTGHWTNV 190 (301)
T ss_dssp EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTTTEEEEE
T ss_pred EEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CC-EEEEECCCCCCcccceEEEEeCCCCcEEeC
Confidence 567777654 3588999887754332 2211111122222 44 677777754 4588888876532111
Q ss_pred e-Eeee-CCeeEEEeCCCCCcEEEEEeCC-----CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEE
Q 013827 282 K-WAVA-ADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 354 (436)
Q Consensus 282 ~-~~~~-~~i~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 354 (436)
. .... .....+.+ +..+++.|+.+ ..+.+||+.+.. ...+..+.........+.+ ++ .++
T Consensus 191 ~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~--~~-~i~ 257 (301)
T 2vpj_A 191 TPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDS-------WTTVTSMTTPRCYVGATVL--RG-RLY 257 (301)
T ss_dssp CCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE-------EEEECCCSSCCBSCEEEEE--TT-EEE
T ss_pred CCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCc-------EEECCCCCCcccceeEEEE--CC-EEE
Confidence 0 0001 11122222 23677777654 468899987652 1111111111112222222 33 677
Q ss_pred EEEeCC-----CcEEEEECCCCCceeE
Q 013827 355 ATGSTD-----KMVKLWDLSNNQPSCI 376 (436)
Q Consensus 355 ~~~~~d-----~~i~iwd~~~~~~~~~ 376 (436)
+.|+.+ ..+.+||..+.+...+
T Consensus 258 v~GG~~~~~~~~~v~~yd~~~~~W~~~ 284 (301)
T 2vpj_A 258 AIAGYDGNSLLSSIECYDPIIDSWEVV 284 (301)
T ss_dssp EECCBCSSSBEEEEEEEETTTTEEEEE
T ss_pred EEcCcCCCcccccEEEEcCCCCeEEEc
Confidence 777655 3578889887764333
No 300
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.60 E-value=0.0049 Score=59.44 Aligned_cols=194 Identities=12% Similarity=0.104 Sum_probs=116.9
Q ss_pred EEEEEeC-CCcEEEEeC-CCCeEEEEEcccCCC-----------eEEEEEcCCCC---CEEEEEECCCcEEEEecCCCCC
Q 013827 215 ILASASA-DKQVKIWDV-AAGKCNLTLEHHTDK-----------VQAVAWNHHSP---QILLSGSFDRSVVMKDARISTH 278 (436)
Q Consensus 215 ~l~s~~~-dg~v~vwd~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~---~~l~s~~~d~~i~~wd~~~~~~ 278 (436)
.++.++. ++.|.-+|. .+++.+..+...... ...+++.|.+. ..++.++.|+.|.-+|.++++.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 5667777 889999999 899988777532210 12345543331 2377888899999999988876
Q ss_pred ccceEeee----CCeeE-EEeCCCCCcEEEEEe------CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCC-------
Q 013827 279 SGFKWAVA----ADVES-LAWDPHAEHSFVVSL------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA------- 340 (436)
Q Consensus 279 ~~~~~~~~----~~i~~-~~~~~~~~~~~~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~------- 340 (436)
.-...... ..+.+ ..+. ++ .+++++ .++.|+.+|.++++ .+..+......
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v~-~g--~V~vg~~g~e~g~~g~v~A~D~~TG~---------~~W~~~~~~~~~~~~~~p 211 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYVV-KD--KVIIGSSGAELGVRGYLTAYDVKTGE---------QVWRAYATGPDKDLLLAS 211 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEEE-TT--EEEECCBCGGGTCCCEEEEEETTTCC---------EEEEEESSSCHHHHTBCT
T ss_pred EEeecCCCCCccceeecCCEEE-CC--EEEEEecccccCCCCeEEEEECCCCc---------EEEEEcCCCCcccccccc
Confidence 53221111 01111 1111 22 455554 37999999999883 23333221100
Q ss_pred ------------------------------e-EEEEecCCCCCEEEEEeCC----------------CcEEEEECCCCCc
Q 013827 341 ------------------------------V-CTISYNPLVPNLLATGSTD----------------KMVKLWDLSNNQP 373 (436)
Q Consensus 341 ------------------------------v-~~~~~~p~~~~~l~~~~~d----------------~~i~iwd~~~~~~ 373 (436)
+ ..+++.+.. .+++.+..+ +.|..+|..+++.
T Consensus 212 ~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~ 290 (599)
T 1w6s_A 212 DFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEA 290 (599)
T ss_dssp TTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCE
T ss_pred ccccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCce
Confidence 0 134556666 677776655 3799999999985
Q ss_pred eeEEeeCCCC--------CcEEEEEEc-CCCC--cEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 374 SCIASRNPKA--------GAVFSVAFS-EDSP--FVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 374 ~~~~~~~~~~--------~~v~~~~~~-~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
.-.+....|. .++. +... .+|+ .+++.++.+|.++++|..+++.+...
T Consensus 291 ~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~ 349 (599)
T 1w6s_A 291 KFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN 349 (599)
T ss_dssp EEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence 4444443332 1222 2222 4662 25777889999999999999987653
No 301
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.55 E-value=0.0066 Score=53.01 Aligned_cols=165 Identities=10% Similarity=0.110 Sum_probs=104.9
Q ss_pred EcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEee-------eCCeeEEEe---CCCCCcEEEEEe--
Q 013827 239 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-------AADVESLAW---DPHAEHSFVVSL-- 306 (436)
Q Consensus 239 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-------~~~i~~~~~---~~~~~~~~~~~~-- 306 (436)
+........+++|++....++++.-..++|..||............. ...+..+.| .|++ .++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~ 86 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNA 86 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEET
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCC-cEEEEEccc
Confidence 33444556688998866355555558999999998754332211111 113578999 6874 5666543
Q ss_pred -----------CCCcEEEEeCC---CCCCCCCCCCCcccEEEe--c-----------cCCCeEEEEecCCCCCEEEEEeC
Q 013827 307 -----------EDGTIKGFDIR---TAKSDPDSTSQQSSFTLH--A-----------HDKAVCTISYNPLVPNLLATGST 359 (436)
Q Consensus 307 -----------~dg~i~i~d~~---~~~~~~~~~~~~~~~~~~--~-----------~~~~v~~~~~~p~~~~~l~~~~~ 359 (436)
.+..|..||+. ++ +.+.... . -......++..++| +..++++.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg---------~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~ 156 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENS---------KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFAL 156 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTC---------CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEE
T ss_pred ccccccccccCCCCEEEEEcCCcCCCC---------CEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCC
Confidence 26789999998 55 2232222 1 11347899999999 78888887
Q ss_pred C-CcEEEEECCCCCceeEEeeC---CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 360 D-KMVKLWDLSNNQPSCIASRN---PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 360 d-~~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
. +.|...+............. ......+.|+++|+|.. |++....|.|..+|+..
T Consensus 157 ~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~-Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 157 GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNK-LIAFGGPRALTAFDVSK 215 (334)
T ss_dssp SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTE-EEEESSSSSEEEEECSS
T ss_pred CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCE-EEEEcCCCeEEEEcCCC
Confidence 7 88877777654322121111 11224679999999985 55555599999999884
No 302
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.54 E-value=0.007 Score=52.91 Aligned_cols=185 Identities=16% Similarity=0.187 Sum_probs=94.1
Q ss_pred cEEEEEeCC-----CcEEEEeCCCCe---EEEE--EcccCCCeEEEEEcCCCCCEEEEEECC-----CcEEEEecCCCCC
Q 013827 214 NILASASAD-----KQVKIWDVAAGK---CNLT--LEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARISTH 278 (436)
Q Consensus 214 ~~l~s~~~d-----g~v~vwd~~~~~---~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~ 278 (436)
.+++.|+.+ ..+.+||+.+.+ .... +.........+.+ ++ .+++.|+.+ ..+.+||+.+.+-
T Consensus 64 ~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GD-MIYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred EEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CC-EEEEEcccCCCcccceEEEEcCCCCeE
Confidence 577777755 468999988765 3222 1111111222222 44 677777654 3578888776542
Q ss_pred ccceE-eee-CCeeEEEeCCCCCcEEEEEeCC-----CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCC
Q 013827 279 SGFKW-AVA-ADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP 351 (436)
Q Consensus 279 ~~~~~-~~~-~~i~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 351 (436)
..... ... .....+.+ ++ .+++.|+.+ ..+.+||+.+.. ...+..+.........+.+ ++
T Consensus 141 ~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~~-------W~~~~~~p~~r~~~~~~~~--~~- 207 (301)
T 2vpj_A 141 SMLGDMQTAREGAGLVVA--SG-VIYCLGGYDGLNILNSVEKYDPHTGH-------WTNVTPMATKRSGAGVALL--ND- 207 (301)
T ss_dssp EEEEECSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTTTE-------EEEECCCSSCCBSCEEEEE--TT-
T ss_pred EECCCCCCCcccceEEEE--CC-EEEEECCCCCCcccceEEEEeCCCCc-------EEeCCCCCcccccceEEEE--CC-
Confidence 21110 001 11122222 23 577777654 458888887652 1111111111111222333 33
Q ss_pred CEEEEEeCC-----CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCC-----CcEEEEeCCCCc
Q 013827 352 NLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDA 417 (436)
Q Consensus 352 ~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~ 417 (436)
.+++.|+.+ ..+.+||+.+.+...+............+.+ ++. +++.|+.+ ..+.+||+.+.+
T Consensus 208 ~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 208 HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGR-LYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCE-EEEEcCcCCCcccccEEEEcCCCCe
Confidence 677777654 4689999998775444333222222222233 455 67777765 357889987654
No 303
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.52 E-value=0.018 Score=50.34 Aligned_cols=150 Identities=10% Similarity=0.045 Sum_probs=76.1
Q ss_pred cEEEEEeCC------CcEEEEeCCCCeEEEEEc--ccCCCeEEEEEcCCCCCEEEEEEC---------CCcEEEEecCCC
Q 013827 214 NILASASAD------KQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSF---------DRSVVMKDARIS 276 (436)
Q Consensus 214 ~~l~s~~~d------g~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~---------d~~i~~wd~~~~ 276 (436)
.+++.|+.+ ..+.+||+.+.+-...-. ........+.+ ++ .+++.|+. -..+.+||+.+.
T Consensus 103 ~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 103 KIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NG-LIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp EEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred EEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CC-EEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 577777765 468999998876433211 11111122222 44 66666654 345788888765
Q ss_pred CCccce-Eeee-CCeeEEEeCCCCCcEEEEEeCC-----CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCC
Q 013827 277 THSGFK-WAVA-ADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 349 (436)
Q Consensus 277 ~~~~~~-~~~~-~~i~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 349 (436)
.-.... .... .....+.+ +..+++.|+.+ ..+.+||+.+.. ...+..+.........+.+ +
T Consensus 180 ~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~--~ 247 (306)
T 3ii7_A 180 TWTELCPMIEARKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKLNE-------WKMVSPMPWKGVTVKCAAV--G 247 (306)
T ss_dssp EEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTTTE-------EEECCCCSCCBSCCEEEEE--T
T ss_pred eEEECCCccchhhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCCCc-------EEECCCCCCCccceeEEEE--C
Confidence 321110 0001 11122222 23577776643 458889987652 1111111111122223333 3
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCCceeEEee
Q 013827 350 VPNLLATGSTD-----KMVKLWDLSNNQPSCIASR 379 (436)
Q Consensus 350 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~ 379 (436)
+ .+++.|+.+ ..+.+||..+.+...+...
T Consensus 248 ~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 281 (306)
T 3ii7_A 248 S-IVYVLAGFQGVGRLGHILEYNTETDKWVANSKV 281 (306)
T ss_dssp T-EEEEEECBCSSSBCCEEEEEETTTTEEEEEEEE
T ss_pred C-EEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCc
Confidence 3 677777754 4688999988775444333
No 304
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.51 E-value=0.023 Score=50.08 Aligned_cols=196 Identities=9% Similarity=0.119 Sum_probs=115.7
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCC----CCc--
Q 013827 141 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE----FRN-- 214 (436)
Q Consensus 141 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~-- 214 (436)
|...+++.....+-+.|||+ .++.+.. +. .+.++.+..-|. |..
T Consensus 38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~---------------------------~~--~g~~nnVD~r~~~~l~g~~~d 87 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSL-DGKMLHS---------------------------YN--TGKLNNVDIRYDFPLNGKKVD 87 (355)
T ss_dssp GGGCEEEEEETTTEEEEEET-TSCEEEE---------------------------EC--CSCEEEEEEEEEEEETTEEEE
T ss_pred CCccEEEEEcCCCCEEEEcC-CCcEEEE---------------------------cc--CCCcccEEEecccccCCceEe
Confidence 44555666667789999999 4444432 11 145566666553 111
Q ss_pred EEEEEe-C--CCcEEEEeC--CCCeEEEEEcc------cC-CCeEEEEE--cCCCC-CEEEEEECCCcEEEEecCCCC--
Q 013827 215 ILASAS-A--DKQVKIWDV--AAGKCNLTLEH------HT-DKVQAVAW--NHHSP-QILLSGSFDRSVVMKDARIST-- 277 (436)
Q Consensus 215 ~l~s~~-~--dg~v~vwd~--~~~~~~~~~~~------~~-~~v~~~~~--~~~~~-~~l~s~~~d~~i~~wd~~~~~-- 277 (436)
++++.. . +++|.+|++ .+++ +..+.. .. ..+..+++ +|.+. .++++...+|.+..|++....
T Consensus 88 la~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g 166 (355)
T 3amr_A 88 IAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG 166 (355)
T ss_dssp EEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS
T ss_pred EEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC
Confidence 233333 3 578999976 3333 444421 11 45667777 77542 368888889999999985321
Q ss_pred -C---ccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEe--ccCCCeEEEEe--cCC
Q 013827 278 -H---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISY--NPL 349 (436)
Q Consensus 278 -~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~--~p~ 349 (436)
. ....+...+.+..+..++.. ..++++-++..|..|+.+...... ...+..+. .-...+..|++ .++
T Consensus 167 ~~~~~lVR~f~lgsq~EgcvvDd~~-g~Lyv~eEd~GIw~~da~p~~~~~----~~~v~~~~~g~l~aDvEGLai~~~~~ 241 (355)
T 3amr_A 167 YISGKKVRAFKMNSQTEGMAADDEY-GRLYIAEEDEAIWKFSAEPDGGSN----GTVIDRADGRHLTRDIEGLTIYYAAD 241 (355)
T ss_dssp CEEEEEEEEEECSSCEEEEEEETTT-TEEEEEETTTEEEEEECSTTSCSC----CEEEEEBSSSSBCSCEEEEEEEECGG
T ss_pred cccceEEEEecCCCCcceEEEcCCC-CeEEEecccceEEEEeCCcCCCCC----ceEEEEecCCccccCcceEEEEecCC
Confidence 1 12234556788899999865 578888888767667754321100 12222221 11235777777 455
Q ss_pred CCCEEEEEe-CCCcEEEEECC-CCC
Q 013827 350 VPNLLATGS-TDKMVKLWDLS-NNQ 372 (436)
Q Consensus 350 ~~~~l~~~~-~d~~i~iwd~~-~~~ 372 (436)
+..+|++++ .+++..+||.. +.+
T Consensus 242 g~gyLivSsQG~~s~~Vydr~~~~~ 266 (355)
T 3amr_A 242 GKGYLMASSQGNSSYAIYDRQGKNK 266 (355)
T ss_dssp GCEEEEEEEGGGTEEEEEESSTTCC
T ss_pred CCEEEEEEcCCCCEEEEEECCCCCc
Confidence 533555555 57799999997 444
No 305
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.49 E-value=0.042 Score=47.67 Aligned_cols=199 Identities=11% Similarity=0.128 Sum_probs=126.5
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEee
Q 013827 206 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV 285 (436)
Q Consensus 206 ~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 285 (436)
.-.+|. .+.+|--. ..++.++|+++.+.++.+.- ...|.-=.|-... .|+-.+ +..|+-|++.....+...+..
T Consensus 72 AIMnP~-~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~--~L~lVT-~taVyHWs~~~~s~P~kvFdR 145 (365)
T 2xzh_A 72 AIMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDR 145 (365)
T ss_dssp EEECSS-SSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSS--EEEEEE-SSEEEEEESSTTCCCEEEEEC
T ss_pred eeeCCC-ccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCC--eEEEEc-CCcEEEEcccCCCCCceeeec
Confidence 345887 45666665 67899999999988888874 5677777886654 344443 567999999865444333322
Q ss_pred -----eCCeeEEEeCCCCCcEEEEEe------CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCC--CCC
Q 013827 286 -----AADVESLAWDPHAEHSFVVSL------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL--VPN 352 (436)
Q Consensus 286 -----~~~i~~~~~~~~~~~~~~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~ 352 (436)
...|..-..+++..-++++|- -.|.+.+|..+.. ..+.+.+|......+...-+ ...
T Consensus 146 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~----------~sQ~ieGhaa~F~~~~~~g~~~~~~ 215 (365)
T 2xzh_A 146 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK----------VSQPIEGHAASFAQFKMEGNAEEST 215 (365)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT----------EEEEECCSEEEEEEECCTTCSSCEE
T ss_pred chhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc----------ccceeeeeeeeeEEEecCCCCCCce
Confidence 345777777887755555553 2477899998764 34566777555433333211 112
Q ss_pred EEEEEeC---CCcEEEEECCCC---Cc----eeE-EeeC--CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccc
Q 013827 353 LLATGST---DKMVKLWDLSNN---QP----SCI-ASRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 419 (436)
Q Consensus 353 ~l~~~~~---d~~i~iwd~~~~---~~----~~~-~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (436)
+++-+.. .+.+.+.++... .+ ..+ ..++ ...+..-++..++... ++..-+.-|.|++||+.++.++
T Consensus 216 lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kyg-viyviTK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 216 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCI 294 (365)
T ss_dssp EEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCC-EEEEEeCCcEEEEEEcccCcEE
Confidence 3443333 258899988443 11 011 1122 1244566888888777 5777889999999999999987
Q ss_pred cc
Q 013827 420 SN 421 (436)
Q Consensus 420 ~~ 421 (436)
..
T Consensus 295 ~~ 296 (365)
T 2xzh_A 295 YM 296 (365)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 306
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.48 E-value=0.013 Score=51.26 Aligned_cols=185 Identities=16% Similarity=0.136 Sum_probs=94.6
Q ss_pred cEEEEEeCC----CcEEEEeCCCCeEEEEEc--ccCCCeEEEEEcCCCCCEEEEEECC------CcEEEEecCCCCCccc
Q 013827 214 NILASASAD----KQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFD------RSVVMKDARISTHSGF 281 (436)
Q Consensus 214 ~~l~s~~~d----g~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~ 281 (436)
.+++.|+.+ ..+.+||+.+.+....-. ........+.+ ++ .+++.|+.+ ..+.+||+.+..-...
T Consensus 57 ~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~ 133 (306)
T 3ii7_A 57 VVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EG-KIYTSGGSEVGNSALYLFECYDTRTESWHTK 133 (306)
T ss_dssp EEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TT-EEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CC-EEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence 577777755 578899998876433221 11111222222 44 677777765 4588888876532110
Q ss_pred e-Eeee-CCeeEEEeCCCCCcEEEEEeC---------CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC
Q 013827 282 K-WAVA-ADVESLAWDPHAEHSFVVSLE---------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 350 (436)
Q Consensus 282 ~-~~~~-~~i~~~~~~~~~~~~~~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 350 (436)
. .... .....+.+ ++ .+++.|+. -..+.+||+.+.. ...+..+......-..+.+ ++
T Consensus 134 ~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~--~~ 201 (306)
T 3ii7_A 134 PSMLTQRCSHGMVEA--NG-LIYVCGGSLGNNVSGRVLNSCEVYDPATET-------WTELCPMIEARKNHGLVFV--KD 201 (306)
T ss_dssp CCCSSCCBSCEEEEE--TT-EEEEECCEESCTTTCEECCCEEEEETTTTE-------EEEECCCSSCCBSCEEEEE--TT
T ss_pred CCCcCCcceeEEEEE--CC-EEEEECCCCCCCCcccccceEEEeCCCCCe-------EEECCCccchhhcceEEEE--CC
Confidence 0 0001 11122222 23 56666653 3458889987652 1111111111111222222 33
Q ss_pred CCEEEEEeCC-----CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCC-----CcEEEEeCCCCc
Q 013827 351 PNLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDA 417 (436)
Q Consensus 351 ~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~ 417 (436)
.+++.|+.+ ..+.+||..+.+...+............+.+ ++. +++.|+.+ ..+.+||+.+.+
T Consensus 202 -~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 202 -KIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSI-VYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp -EEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTE-EEEEECBCSSSBCCEEEEEETTTTE
T ss_pred -EEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCE-EEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 667776653 4588999988764433322222222233333 454 67778754 568899988754
No 307
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.46 E-value=0.046 Score=48.69 Aligned_cols=187 Identities=7% Similarity=-0.048 Sum_probs=105.5
Q ss_pred ceeEEEecCCCCcEEEEEe-------------CCCcEEEEeCCCCe-EEEEE--cc-----cCCCeEEEEEcC--CCCCE
Q 013827 202 SVLGLAWNKEFRNILASAS-------------ADKQVKIWDVAAGK-CNLTL--EH-----HTDKVQAVAWNH--HSPQI 258 (436)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~~-------------~dg~v~vwd~~~~~-~~~~~--~~-----~~~~v~~~~~~~--~~~~~ 258 (436)
..-+++..|+| .+++++ .+|.|.++|+.+.. ....+ .+ ..-....+.+.+ ++..+
T Consensus 51 G~EDi~~~~~G--~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 51 GSEDLEILPNG--LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCCEEEECTTS--EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CcceeEEcCCC--eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 34566677875 344443 68999999987421 12222 22 223667777755 34223
Q ss_pred EEEE-EC--CCcEEEEecCCCCCccceE-ee----eCCeeEEEeCCCCCcEEEEEe-----------------CCCcEEE
Q 013827 259 LLSG-SF--DRSVVMKDARISTHSGFKW-AV----AADVESLAWDPHAEHSFVVSL-----------------EDGTIKG 313 (436)
Q Consensus 259 l~s~-~~--d~~i~~wd~~~~~~~~~~~-~~----~~~i~~~~~~~~~~~~~~~~~-----------------~dg~i~i 313 (436)
|+++ .. +.++.+|++.......... .. -...+.+.+.++| .++++.. ..|.|.-
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 4444 33 4678888876543322222 11 2347889999877 4555543 1234444
Q ss_pred EeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC-CCceeEEeeCCCCCcEEEEEEc
Q 013827 314 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFS 392 (436)
Q Consensus 314 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~ 392 (436)
+|.. . ...+...-...+.++|+|++..+.++-+..+.|..|++.. +.......+ ...+....+++.
T Consensus 208 ~d~~-----------~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD 274 (355)
T 3sre_A 208 YSPN-----------D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVD 274 (355)
T ss_dssp ECTT-----------C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEEC
T ss_pred EECC-----------e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEe
Confidence 4432 1 2223333355789999999944444455678999999864 332222222 224567889999
Q ss_pred C-CCCcEEEEEeCC
Q 013827 393 E-DSPFVLAIGGSK 405 (436)
Q Consensus 393 ~-~~~~~l~s~~~d 405 (436)
+ +|. +.+++..+
T Consensus 275 ~e~G~-lwva~~~~ 287 (355)
T 3sre_A 275 PVTGD-LWVGCHPN 287 (355)
T ss_dssp TTTCC-EEEEEESC
T ss_pred CCCCc-EEEEecCC
Confidence 9 588 46655433
No 308
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.42 E-value=0.014 Score=50.90 Aligned_cols=185 Identities=16% Similarity=0.175 Sum_probs=92.9
Q ss_pred cEEEEEeCC-----CcEEEEeCCCCeEEEEE--cccCCCeEEEEEcCCCCCEEEEEECCC-----cEEEEecCCCCCccc
Q 013827 214 NILASASAD-----KQVKIWDVAAGKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARISTHSGF 281 (436)
Q Consensus 214 ~~l~s~~~d-----g~v~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~ 281 (436)
.+++.|+.+ ..+.+||+.+.+-...- .........+.+ ++ .+++.|+.++ .+.+||+.+..-...
T Consensus 63 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 63 LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NG-LLYAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp EEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred EEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CC-EEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 577777754 35889998877643321 111111222222 44 6777777654 467788765432110
Q ss_pred e-Eeee-CCeeEEEeCCCCCcEEEEEeCC-------CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCC
Q 013827 282 K-WAVA-ADVESLAWDPHAEHSFVVSLED-------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 352 (436)
Q Consensus 282 ~-~~~~-~~i~~~~~~~~~~~~~~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 352 (436)
. .... .....+.+ +..+++.|+.+ ..+.+||+.+.. ...+..+.........+.+ ++ .
T Consensus 140 ~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~--~~-~ 206 (302)
T 2xn4_A 140 APMNTRRSSVGVGVV---GGLLYAVGGYDVASRQCLSTVECYNATTNE-------WTYIAEMSTRRSGAGVGVL--NN-L 206 (302)
T ss_dssp CCCSSCCBSCEEEEE---TTEEEEECCEETTTTEECCCEEEEETTTTE-------EEEECCCSSCCBSCEEEEE--TT-E
T ss_pred CCCCCcccCceEEEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCc-------EEECCCCccccccccEEEE--CC-E
Confidence 0 0011 11122222 23566666542 358889987652 1111111111112222223 33 6
Q ss_pred EEEEEeCC-----CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCC-----cEEEEeCCCCc
Q 013827 353 LLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-----KLEIWDTLSDA 417 (436)
Q Consensus 353 ~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~ 417 (436)
+++.|+.+ ..+.+||..+.+...+............+.+ ++. +++.|+.++ .+.+||+.+.+
T Consensus 207 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 207 LYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGL-LYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCE-EEEECCcCCCcccccEEEEcCCCCe
Confidence 77777654 4689999988765444332222111222222 455 677777653 48999998764
No 309
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.41 E-value=0.054 Score=46.99 Aligned_cols=246 Identities=12% Similarity=0.162 Sum_probs=145.9
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
+|..+.+|.=. ..+++|+|+++.+.+... .....|.-=.|-.+ ..|+-.
T Consensus 75 nP~~~ViALra-g~~LQiFnletK~klks~----------------------------~~~e~VvfWkWis~--~~L~lV 123 (365)
T 2xzh_A 75 NPASKVIALKA-GKTLQIFNIEMKSKMKAH----------------------------TMTDDVTFWKWISL--NTVALV 123 (365)
T ss_dssp CSSSSEEEEEE-TTEEEEEETTTTEEEEEE----------------------------ECSSCEEEEEECSS--SEEEEE
T ss_pred CCCccEEEEec-CCeEEEechHHhhhhcce----------------------------ecCCccEEEEecCC--CeEEEE
Confidence 78888888766 688999999875544322 12456777778766 355555
Q ss_pred eCCCcEEEEeCCC-CeEEEEEccc----CCCeEEEEEcCCCCCEEEEEE------CCCcEEEEecCCCCCccceEeeeCC
Q 013827 220 SADKQVKIWDVAA-GKCNLTLEHH----TDKVQAVAWNHHSPQILLSGS------FDRSVVMKDARISTHSGFKWAVAAD 288 (436)
Q Consensus 220 ~~dg~v~vwd~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~~~~ 288 (436)
+. ..|.-|+++. ..+.+.+..| ...|..-..+++..-++++|- -.|.+.+|..+...... ..+|...
T Consensus 124 T~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~-ieGhaa~ 201 (365)
T 2xzh_A 124 TD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-IEGHAAS 201 (365)
T ss_dssp ES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEE-ECCSEEE
T ss_pred cC-CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccce-eeeeeee
Confidence 54 5899999974 3566666544 356777777888833444443 23677888876543222 3333333
Q ss_pred eeEEEeC--CCCCcEEEEEeC---CCcEEEEeCCCCCCCCCCCCCcccEEEe---ccCCCeEEEEecCCCCCEEEEEeCC
Q 013827 289 VESLAWD--PHAEHSFVVSLE---DGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLVPNLLATGSTD 360 (436)
Q Consensus 289 i~~~~~~--~~~~~~~~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~d 360 (436)
...+... +....+++.+.. .+.+++.++.........-..+.+..+. ....-..++..++.. .+++.-+.-
T Consensus 202 F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~ky-gviyviTK~ 280 (365)
T 2xzh_A 202 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKY 280 (365)
T ss_dssp EEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTT-TEEEEEETT
T ss_pred eEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccC-CEEEEEeCC
Confidence 3222222 111223333322 2589999985541111000001111111 123445678888876 789999999
Q ss_pred CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 361 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 361 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
|.|.+||+.++....... --..+|..-+-+..... ++.....|.|.--.+.....+...
T Consensus 281 G~ihlyDleTgt~i~~nr--IS~d~iF~ta~~~~~~G-i~~Vnr~GqVl~v~v~~~~ivpyi 339 (365)
T 2xzh_A 281 GYIHLYDLETGTCIYMNR--ISGETIFVTAPHEATAG-IIGVNRKGQVLSVCVEEENIIPYI 339 (365)
T ss_dssp SEEEEEETTTCCEEEEEE--CCSSCEEEEEEEGGGTE-EEEEETTCEEEEEEECTTTHHHHH
T ss_pred cEEEEEEcccCcEEEEec--cCCCceEEecccCCCCc-EEEEcCCCEEEEEEECcccEehhh
Confidence 999999999998444333 33456666566555443 455668888888887777665443
No 310
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.35 E-value=0.081 Score=47.83 Aligned_cols=200 Identities=11% Similarity=0.140 Sum_probs=128.1
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEe
Q 013827 205 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA 284 (436)
Q Consensus 205 ~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 284 (436)
+.-.+|.. +.+|--. ..++.|+|+++...++.+.- ...|.-=.|-... .|+-.+ +..|+-|++.....+...+.
T Consensus 70 sAIMnP~~-~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~--~l~lVT-~taVyHWsi~~~s~P~kvFd 143 (494)
T 1bpo_A 70 SAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFD 143 (494)
T ss_dssp EEEECSSS-SCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETT--EEEEEC-SSEEEEEESSSSCCCEEEEE
T ss_pred eeeeCCCC-cEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCC--eEEEEc-CCeeEEecccCCCCchhhee
Confidence 34567773 5666554 67999999999988888874 4466666776544 344333 56799999976544433332
Q ss_pred e-----eCCeeEEEeCCCCCcEEEEEe------CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC--C
Q 013827 285 V-----AADVESLAWDPHAEHSFVVSL------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV--P 351 (436)
Q Consensus 285 ~-----~~~i~~~~~~~~~~~~~~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~ 351 (436)
. ...|..-..+++..-++++|- -.|.+.+|..+.. ..+.+.+|......+...-+. .
T Consensus 144 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~----------~sQ~ieGhaa~F~~~~~~g~~~~~ 213 (494)
T 1bpo_A 144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK----------VSQPIEGHAASFAQFKMEGNAEES 213 (494)
T ss_dssp CCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC----------CEEEECCSEEEEEEEECTTCSSEE
T ss_pred cchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc----------ccchheeeeeeeEEEecCCCCCCc
Confidence 2 345777777887755555543 3478899998764 356677776655544443211 1
Q ss_pred CEEEEEeCC---CcEEEEECCCC---C-c---eeEE-eeC--CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 352 NLLATGSTD---KMVKLWDLSNN---Q-P---SCIA-SRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 352 ~~l~~~~~d---~~i~iwd~~~~---~-~---~~~~-~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
.+++-+... +.+.|.++... . + ..+. .++ ...+...++..++... ++..-+.-|.|++||+.++.+
T Consensus 214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEeccccee
Confidence 244444442 78999998543 1 1 0111 111 2234566888998877 577788999999999999998
Q ss_pred ccc
Q 013827 419 ISN 421 (436)
Q Consensus 419 ~~~ 421 (436)
+..
T Consensus 293 i~~ 295 (494)
T 1bpo_A 293 IYM 295 (494)
T ss_dssp EEE
T ss_pred eee
Confidence 754
No 311
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.26 E-value=0.1 Score=47.17 Aligned_cols=244 Identities=12% Similarity=0.168 Sum_probs=147.8
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
+|..+.+|.=. ..++.|+|+++.+.+... .....|.-=.|-.+ +.|+-.
T Consensus 74 nP~~~iiALra-g~~lQiFnle~K~klks~----------------------------~~~e~VvfWkWis~--~~l~lV 122 (494)
T 1bpo_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAH----------------------------TMTDDVTFWKWISL--NTVALV 122 (494)
T ss_dssp CSSSSCEEEEE-TTEEEEEETTTTEEEEEE----------------------------ECSSCCCEEEEEET--TEEEEE
T ss_pred CCCCcEEEEec-CCeEEEEchHHhhhhcce----------------------------ecCCCceEEEecCC--CeEEEE
Confidence 78888888765 689999999865544321 12346767777665 355555
Q ss_pred eCCCcEEEEeCCC-CeEEEEEccc----CCCeEEEEEcCCCCCEEEEEE------CCCcEEEEecCCCCCccceEeeeCC
Q 013827 220 SADKQVKIWDVAA-GKCNLTLEHH----TDKVQAVAWNHHSPQILLSGS------FDRSVVMKDARISTHSGFKWAVAAD 288 (436)
Q Consensus 220 ~~dg~v~vwd~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~~~~ 288 (436)
+. ..|.-|++.. ..+++.+..| ...|..-..+++..-++++|- -.|.+.+|..+...... ..+|...
T Consensus 123 T~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~-ieGhaa~ 200 (494)
T 1bpo_A 123 TD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-IEGHAAS 200 (494)
T ss_dssp CS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEE-ECCSEEE
T ss_pred cC-CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccch-heeeeee
Confidence 53 5899999974 3566666544 356777777888833444442 24678888876544322 3344444
Q ss_pred eeEEEeCC--CCCcEEEEEeC---CCcEEEEeCCCCCCCCCCCCCcccEEE----eccCCCeEEEEecCCCCCEEEEEeC
Q 013827 289 VESLAWDP--HAEHSFVVSLE---DGTIKGFDIRTAKSDPDSTSQQSSFTL----HAHDKAVCTISYNPLVPNLLATGST 359 (436)
Q Consensus 289 i~~~~~~~--~~~~~~~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~l~~~~~ 359 (436)
...+...- ....++..+.. .+.+++.++........ ...+....+ .....-..++..++.. .+++.-+.
T Consensus 201 F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~-~f~kk~vdv~fppe~~~DFPvamqvs~ky-gviyviTK 278 (494)
T 1bpo_A 201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ-PFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITK 278 (494)
T ss_dssp EEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCC-CCCCEEEECCCCTTSTTCCEEEEEEETTT-TEEEEEET
T ss_pred eEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCC-CccceeeeeeCCcccccCceeEEEecccC-CEEEEEec
Confidence 43333321 11223443433 27899999865411100 000111111 1123445678888877 78999999
Q ss_pred CCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 360 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 360 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
-|.|.+||+.++....... -...+|...+-+..... ++.....|.|.--.+.....+..
T Consensus 279 ~G~i~lyDleTgt~i~~nr--Is~~~iF~t~~~~~~~G-i~~Vnr~GqVl~v~v~e~~ivpy 337 (494)
T 1bpo_A 279 YGYIHLYDLETGTCIYMNR--ISGETIFVTAPHEATAG-IIGVNRKGQVLSVCVEEENIIPY 337 (494)
T ss_dssp TSEEEEEETTTCCEEEEEE--CCSSCEEEEEEETTTTE-EEEEETTCEEEEEEECTTTHHHH
T ss_pred CceEEEEecccceeeeeec--ccCCceEEecccCCCCc-EEEEccCceEEEEEEccccchhh
Confidence 9999999999998544333 33456766666655554 55566888888877777666544
No 312
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.21 E-value=0.1 Score=46.10 Aligned_cols=150 Identities=8% Similarity=-0.003 Sum_probs=83.0
Q ss_pred cccceeEEEecCCCCcEEEEEeCCCcEE-EEeC--CCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCC
Q 013827 199 HTDSVLGLAWNKEFRNILASASADKQVK-IWDV--AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 275 (436)
Q Consensus 199 h~~~v~~~~~~~~~~~~l~s~~~dg~v~-vwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 275 (436)
+...+..+++.+++ .+++.+. +|.+. -+|- .+-+.+ -......+..+.+.+++ .++ .++.+|.+++.+...
T Consensus 161 ~~~~~~~~~~~~~~-~~~~~g~-~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g-~~~-~~~~~G~~~~s~~D~ 234 (327)
T 2xbg_A 161 AIGVMRNLNRSPSG-EYVAVSS-RGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDG-RLW-MIVNGGKIAFSDPDN 234 (327)
T ss_dssp CCCCEEEEEECTTS-CEEEEET-TSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTS-CEE-EEETTTEEEEEETTE
T ss_pred CCcceEEEEEcCCC-cEEEEEC-CCcEEEEeCCCCCceeEC--CCCCCCccceeEECCCC-CEE-EEeCCceEEEecCCC
Confidence 44578899999985 4665554 45444 3442 122222 12345678899999887 544 556678777763221
Q ss_pred CC---Cccce-EeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec---cCCCeEEEEecC
Q 013827 276 ST---HSGFK-WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA---HDKAVCTISYNP 348 (436)
Q Consensus 276 ~~---~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~p 348 (436)
+. ..... ......+..+.+.+++ .++++ +.+|.+ ++....+ .....+.. ....+..+.|.+
T Consensus 235 G~tW~~~~~~~~~~~~~~~~v~~~~~~-~~~~~-g~~g~i-~~S~DgG---------~tW~~~~~~~~~~~~~~~v~~~~ 302 (327)
T 2xbg_A 235 SENWGELLSPLRRNSVGFLDLAYRTPN-EVWLA-GGAGAL-LCSQDGG---------QTWQQDVDVKKVPSNFYKILFFS 302 (327)
T ss_dssp EEEECCCBCTTSSCCSCEEEEEESSSS-CEEEE-ESTTCE-EEESSTT---------SSCEECGGGTTSSSCCCEEEEEE
T ss_pred CCeeEeccCCcccCCcceEEEEecCCC-EEEEE-eCCCeE-EEeCCCC---------cccEEcCccCCCCCCeEEEEEEC
Confidence 11 11100 0112357888888754 44454 456766 3343333 21222221 235677888875
Q ss_pred CCCCEEEEEeCCCcEEEEEC
Q 013827 349 LVPNLLATGSTDKMVKLWDL 368 (436)
Q Consensus 349 ~~~~~l~~~~~d~~i~iwd~ 368 (436)
+ ..+++++.+|.|.-++-
T Consensus 303 ~--~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 303 P--DQGFILGQKGILLRYVT 320 (327)
T ss_dssp T--TEEEEECSTTEEEEECC
T ss_pred C--CceEEEcCCceEEEEcC
Confidence 4 45667778888776653
No 313
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.19 E-value=0.026 Score=49.41 Aligned_cols=185 Identities=11% Similarity=0.121 Sum_probs=92.4
Q ss_pred cEEEEEeC----C-----CcEEEEeCCCCeEEEE--EcccCCCeEEEEEcCCCCCEEEEEECC-----CcEEEEecCCCC
Q 013827 214 NILASASA----D-----KQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARIST 277 (436)
Q Consensus 214 ~~l~s~~~----d-----g~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~ 277 (436)
.+++.|+. + ..+.+||+.+.+.... +.........+.+ ++ .+++.|+.+ ..+.+||+.+..
T Consensus 72 ~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 148 (308)
T 1zgk_A 72 LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DG-HIYAVGGSHGCIHHNSVERYEPERDE 148 (308)
T ss_dssp EEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TT-EEEEECCEETTEECCCEEEEETTTTE
T ss_pred EEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CC-EEEEEcCCCCCcccccEEEECCCCCe
Confidence 46666665 2 4688999887754322 1111111222222 44 667776643 357888887543
Q ss_pred Cccce-Eee-eCCeeEEEeCCCCCcEEEEEeCC-----CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC
Q 013827 278 HSGFK-WAV-AADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 350 (436)
Q Consensus 278 ~~~~~-~~~-~~~i~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 350 (436)
-.... ... ......+.+ +..+++.|+.+ ..+.+||+.+.. ...+..+.........+.+ ++
T Consensus 149 W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~--~~ 216 (308)
T 1zgk_A 149 WHLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNE-------WRMITAMNTIRSGAGVCVL--HN 216 (308)
T ss_dssp EEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTE-------EEECCCCSSCCBSCEEEEE--TT
T ss_pred EeECCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCe-------EeeCCCCCCccccceEEEE--CC
Confidence 21100 000 111122222 23577777654 458888887652 1111111111122222333 33
Q ss_pred CCEEEEEeCC-----CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCC-----CcEEEEeCCCCc
Q 013827 351 PNLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDA 417 (436)
Q Consensus 351 ~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~ 417 (436)
.+++.|+.+ ..+.+||+.+.+...+............+.+ +++ +++.|+.+ ..+.+||+.+.+
T Consensus 217 -~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 217 -CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGR-IYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp -EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCEEEEEETTTTE
T ss_pred -EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCE-EEEEcCcCCCcccceEEEEcCCCCE
Confidence 677777654 5699999988764333222222212222222 454 67777754 457889987654
No 314
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.18 E-value=0.071 Score=46.59 Aligned_cols=147 Identities=12% Similarity=0.124 Sum_probs=73.7
Q ss_pred cEEEEEeCC-----CcEEEEeCCCCeEEEE--EcccCCCeEEEEEcCCCCCEEEEEECC-----CcEEEEecCCCCCccc
Q 013827 214 NILASASAD-----KQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARISTHSGF 281 (436)
Q Consensus 214 ~~l~s~~~d-----g~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~ 281 (436)
.+++.|+.+ ..+.+||+.+.+-... +......-..+.+ ++ .+++.|+.+ ..+..||+.+..-...
T Consensus 123 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 199 (308)
T 1zgk_A 123 HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NR-LLYAVGGFDGTNRLNSAECYYPERNEWRMI 199 (308)
T ss_dssp EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTTTEEEEC
T ss_pred EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CC-EEEEEeCCCCCCcCceEEEEeCCCCeEeeC
Confidence 466666643 3688999987754322 1111111122222 44 677777664 4588888875432110
Q ss_pred e-Eee-eCCeeEEEeCCCCCcEEEEEeCC-----CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEE
Q 013827 282 K-WAV-AADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 354 (436)
Q Consensus 282 ~-~~~-~~~i~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 354 (436)
. ... ......+.+ +..+++.|+.+ ..+.+||+.+.. ...+..+.........+.+ ++ .++
T Consensus 200 ~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~--~~-~i~ 266 (308)
T 1zgk_A 200 TAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETET-------WTFVAPMKHRRSALGITVH--QG-RIY 266 (308)
T ss_dssp CCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE-------EEECCCCSSCCBSCEEEEE--TT-EEE
T ss_pred CCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCc-------EEECCCCCCCccceEEEEE--CC-EEE
Confidence 0 000 111222233 23677777654 568899987652 1111111111112222222 33 677
Q ss_pred EEEeCC-----CcEEEEECCCCCceeE
Q 013827 355 ATGSTD-----KMVKLWDLSNNQPSCI 376 (436)
Q Consensus 355 ~~~~~d-----~~i~iwd~~~~~~~~~ 376 (436)
+.|+.+ ..+.+||..+.+...+
T Consensus 267 v~GG~~~~~~~~~v~~yd~~~~~W~~~ 293 (308)
T 1zgk_A 267 VLGGYDGHTFLDSVECYDPDTDTWSEV 293 (308)
T ss_dssp EECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred EEcCcCCCcccceEEEEcCCCCEEeec
Confidence 777643 3578888888765444
No 315
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.15 E-value=0.13 Score=46.08 Aligned_cols=234 Identities=10% Similarity=0.048 Sum_probs=119.6
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCC---CCcEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---FRNIL 216 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~l 216 (436)
.|+|+++++ ..+|.|++++.+ ++ ..... .. ...........|+++|+ +..+.
T Consensus 37 ~pdG~l~V~-e~~g~I~~~d~~-G~--~~~~~------------------~~---v~~~g~~g~~gia~~pdf~~~g~ly 91 (354)
T 3a9g_A 37 LGGGRYLVT-ERPGRLVLISPS-GK--KLVAS------------------FD---VANVGEAGLLGLALHPEFPKKSWVY 91 (354)
T ss_dssp EETTEEEEE-ETTTEEEEECSS-CE--EEEEE------------------CC---CCCSTTCSEEEEEECTTTTTSCEEE
T ss_pred cCCCeEEEE-eCCCEEEEEeCC-Cc--eEeec------------------cc---eeecCCCceeeEEeCCCCCcCCEEE
Confidence 788985555 556999988732 22 11100 00 01122356789999997 43344
Q ss_pred EEEeC---C----CcEEEEeCCCC-------eEE-EEEc-ccCCCeEEEEEcCCCCCEEEEEEC-------------CCc
Q 013827 217 ASASA---D----KQVKIWDVAAG-------KCN-LTLE-HHTDKVQAVAWNHHSPQILLSGSF-------------DRS 267 (436)
Q Consensus 217 ~s~~~---d----g~v~vwd~~~~-------~~~-~~~~-~~~~~v~~~~~~~~~~~~l~s~~~-------------d~~ 267 (436)
++-+. + +.|..|+.... +.+ ..+. ........|.|.|+| .++++.+. .|.
T Consensus 92 v~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~ 170 (354)
T 3a9g_A 92 LYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGK 170 (354)
T ss_dssp EEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSE
T ss_pred EEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCCCCccccCCCCCCeE
Confidence 44332 3 56777776643 111 1122 111234679999999 66666432 245
Q ss_pred EEEEecCCCCC------ccceEee-eCCeeEEEeCCCCCcEEEEEeCCC---cEEEEeCCCCCCC---------CCCCCC
Q 013827 268 VVMKDARISTH------SGFKWAV-AADVESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSD---------PDSTSQ 328 (436)
Q Consensus 268 i~~wd~~~~~~------~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~dg---~i~i~d~~~~~~~---------~~~~~~ 328 (436)
|.-++....-. ....... -.....++|+|+...++++-.... .|.+.. .+... ......
T Consensus 171 I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~ 248 (354)
T 3a9g_A 171 ILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFV 248 (354)
T ss_dssp EEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSC
T ss_pred EEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCc
Confidence 55555543200 0112221 234678999994435555543322 243332 21100 000001
Q ss_pred cccEEEeccCCCeEEEEec-------CCCCCEEEEEeCCCcEEEEECCCC-CceeEEee-CCCCCcEEEEEEcCCCCcEE
Q 013827 329 QSSFTLHAHDKAVCTISYN-------PLVPNLLATGSTDKMVKLWDLSNN-QPSCIASR-NPKAGAVFSVAFSEDSPFVL 399 (436)
Q Consensus 329 ~~~~~~~~~~~~v~~~~~~-------p~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~l 399 (436)
.++..+.........++|. .++ .++++.-..+.|...++... +......+ ......+..+++.|||. ++
T Consensus 249 ~p~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~-ly 326 (354)
T 3a9g_A 249 DPVIDTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGG-IL 326 (354)
T ss_dssp CCSEECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSC-EE
T ss_pred CCEeecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCc-EE
Confidence 2333331223456788883 345 66666666778888888753 22111222 22345789999999997 56
Q ss_pred EEEe
Q 013827 400 AIGG 403 (436)
Q Consensus 400 ~s~~ 403 (436)
++..
T Consensus 327 v~~~ 330 (354)
T 3a9g_A 327 ISTS 330 (354)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6553
No 316
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.13 E-value=0.085 Score=47.18 Aligned_cols=64 Identities=13% Similarity=0.035 Sum_probs=34.5
Q ss_pred CeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEE
Q 013827 288 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG 357 (436)
Q Consensus 288 ~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 357 (436)
....++|. ++ .++++....+.|...++........ ......+......+..+++.|+| .++++.
T Consensus 269 ap~G~~~~-~G-~l~v~~~~~~~v~~v~~~~~~~~~~---~~~~~~~~~~~~rp~~v~~~pdG-~lyv~~ 332 (352)
T 2ism_A 269 PPGNLAFF-RG-DLYVAGLRGQALLRLVLEGERGRWR---VLRVETALSGFGRLREVQVGPDG-ALYVTT 332 (352)
T ss_dssp CEEEEEEE-TT-EEEEEETTTTEEEEEEEEEETTEEE---EEEEEEEEESSCCEEEEEECTTS-CEEEEE
T ss_pred CCcceEEE-CC-EEEEEECCCCEEEEEEECCCCccee---ecchheecccCCCeeEEEECCCC-cEEEEE
Confidence 45667773 34 5666666677787777764310000 00011221223568899999998 555544
No 317
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.05 E-value=0.24 Score=51.80 Aligned_cols=243 Identities=12% Similarity=0.170 Sum_probs=135.9
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 219 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 219 (436)
+|..+.+|.=. ..++.|+|+++...+... .....|.-=.|-.+ +.|+-.
T Consensus 74 nP~~~iiALra-g~~lQiFnl~~k~klks~----------------------------~~~e~VvfWkWis~--~~l~lV 122 (1630)
T 1xi4_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAH----------------------------TMTDDVTFWKWISL--NTVALV 122 (1630)
T ss_pred CCCcceEEEec-CCeEEEeehHHhhhhccc----------------------------ccCCCceEEEecCC--CeeEEE
Confidence 78888887765 789999999865554431 12346777777665 245444
Q ss_pred eCCCcEEEEeCCC-CeEEEEEccc----CCCeEEEEEcCCCCCEEEEEE------CCCcEEEEecCCCCCccceEeeeCC
Q 013827 220 SADKQVKIWDVAA-GKCNLTLEHH----TDKVQAVAWNHHSPQILLSGS------FDRSVVMKDARISTHSGFKWAVAAD 288 (436)
Q Consensus 220 ~~dg~v~vwd~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~~~~ 288 (436)
+. ..|.-|++.. ..+++.+..| ...|..-..+++..-.+++|- -.|.+.+|......... ..+|...
T Consensus 123 T~-~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~-iegha~~ 200 (1630)
T 1xi4_A 123 TD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-IEGHAAS 200 (1630)
T ss_pred cC-CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh-hhHhHhh
Confidence 43 5799999974 3444555444 456777777888744444443 34788888876544332 3344333
Q ss_pred eeEEEeC--CCCCcEEEEEeC---CCcEEEEeCCCC-CCCCCCCCCcccEEE---eccCCCeEEEEecCCCCCEEEEEeC
Q 013827 289 VESLAWD--PHAEHSFVVSLE---DGTIKGFDIRTA-KSDPDSTSQQSSFTL---HAHDKAVCTISYNPLVPNLLATGST 359 (436)
Q Consensus 289 i~~~~~~--~~~~~~~~~~~~---dg~i~i~d~~~~-~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~~ 359 (436)
...+... +....++..+.. .+.++|.++... ...... ..+.+..+ .....-..++..++.. .++..-+.
T Consensus 201 F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f-~kk~~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk 278 (1630)
T 1xi4_A 201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF-PKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITK 278 (1630)
T ss_pred hheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC-ccccccccCCcccccCcceEEEecccc-CEEEEEec
Confidence 3333222 111223332222 368999998654 111100 00111111 1123334567788876 68888899
Q ss_pred CCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccc
Q 013827 360 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 420 (436)
Q Consensus 360 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (436)
-|.|.+||+.++........ ...+|...+-++.... ++.....|.|.--.+.....+.
T Consensus 279 ~G~~~~~d~~t~~~i~~~ri--s~~~iF~~~~~~~~~g-~~~vnr~G~vl~v~v~~~~iv~ 336 (1630)
T 1xi4_A 279 YGYIHLYDLETGTCIYMNRI--SGETIFVTAPHEATAG-IIGVNRKGQVLSVCVEEENIIP 336 (1630)
T ss_pred CceEEEEecccchhhhhccc--cCCceEEeccCCCCCc-eEEEcCCceEEEEEEccchhhh
Confidence 99999999999874333332 2334544444443332 3334566666665555554443
No 318
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.01 E-value=0.077 Score=46.54 Aligned_cols=175 Identities=8% Similarity=0.045 Sum_probs=85.0
Q ss_pred EEEEeCCCCeEEEEEcccCCCe--EEEEEcCCCCCEEEEEECC--------CcEEEEecCCCCCccce-EeeeCCeeEEE
Q 013827 225 VKIWDVAAGKCNLTLEHHTDKV--QAVAWNHHSPQILLSGSFD--------RSVVMKDARISTHSGFK-WAVAADVESLA 293 (436)
Q Consensus 225 v~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~s~~~d--------~~i~~wd~~~~~~~~~~-~~~~~~i~~~~ 293 (436)
+.+||+.+++-.. +.....+- .++... ++ .+++.|+.+ ..+.+||+.+.+-.... ......-.+++
T Consensus 69 ~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 145 (315)
T 4asc_A 69 FLQFDHLDSEWLG-MPPLPSPRCLFGLGEA-LN-SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL 145 (315)
T ss_dssp EEEEETTTTEEEE-CCCBSSCEESCEEEEE-TT-EEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE
T ss_pred eEEecCCCCeEEE-CCCCCcchhceeEEEE-CC-EEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE
Confidence 7788988776422 21111111 111222 34 667777642 45888888765311100 00111111222
Q ss_pred eCCCCCcEEEEEeC-C-----CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCC-----c
Q 013827 294 WDPHAEHSFVVSLE-D-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK-----M 362 (436)
Q Consensus 294 ~~~~~~~~~~~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~-----~ 362 (436)
. . +..+++.|+. + ..+.+||+.+.. ...+..+.........+.+ ++ .+++.|+.++ .
T Consensus 146 ~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~ 213 (315)
T 4asc_A 146 S-H-MDLVYVIGGKGSDRKCLNKMCVYDPKKFE-------WKELAPMQTARSLFGATVH--DG-RIIVAAGVTDTGLTSS 213 (315)
T ss_dssp E-E-TTEEEEECCBCTTSCBCCCEEEEETTTTE-------EEECCCCSSCCBSCEEEEE--TT-EEEEEEEECSSSEEEE
T ss_pred E-E-CCEEEEEeCCCCCCcccceEEEEeCCCCe-------EEECCCCCCchhceEEEEE--CC-EEEEEeccCCCCccce
Confidence 2 2 2357777765 2 468889987652 1111111111112222333 33 6777777654 4
Q ss_pred EEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCC--------------cEEEEeCCCCc
Q 013827 363 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG--------------KLEIWDTLSDA 417 (436)
Q Consensus 363 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--------------~i~iwd~~~~~ 417 (436)
+.+||..+.+...+............+.+ ++. +++.|+.++ .+.+||+.+.+
T Consensus 214 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 214 AEVYSITDNKWAPFEAFPQERSSLSLVSL--VGT-LYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred EEEEECCCCeEEECCCCCCcccceeEEEE--CCE-EEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 88899988765444332222222222232 444 677777642 37788987654
No 319
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.83 E-value=0.21 Score=43.35 Aligned_cols=144 Identities=11% Similarity=0.112 Sum_probs=71.2
Q ss_pred cEEEEEeCCC-----cEEEEeCCCCeEEEEE--cccCCCeEEEEEcCCCCCEEEEEECC-------CcEEEEecCCCCCc
Q 013827 214 NILASASADK-----QVKIWDVAAGKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFD-------RSVVMKDARISTHS 279 (436)
Q Consensus 214 ~~l~s~~~dg-----~v~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d-------~~i~~wd~~~~~~~ 279 (436)
.+++.|+.++ .+.+||+.+.+-...- .........+.+ ++ .+++.|+.+ ..+..||+.+..-.
T Consensus 110 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 110 LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GG-LLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp EEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred EEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CC-EEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 5677776553 5788998877643321 111111122222 34 666766643 35788888764321
Q ss_pred cce-Eeee-CCeeEEEeCCCCCcEEEEEeCC-----CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCC
Q 013827 280 GFK-WAVA-ADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 352 (436)
Q Consensus 280 ~~~-~~~~-~~i~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 352 (436)
... .... .....+.+ +..+++.|+.+ ..+.+||+.+.. ...+..+.........+.+ ++ .
T Consensus 187 ~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~~~~r~~~~~~~~--~~-~ 253 (302)
T 2xn4_A 187 YIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNA-------WRQVADMNMCRRNAGVCAV--NG-L 253 (302)
T ss_dssp EECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTE-------EEEECCCSSCCBSCEEEEE--TT-E
T ss_pred ECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCC-------EeeCCCCCCccccCeEEEE--CC-E
Confidence 100 0001 11122222 23677777654 468899987652 1111111111111122222 33 6
Q ss_pred EEEEEeCCC-----cEEEEECCCCCc
Q 013827 353 LLATGSTDK-----MVKLWDLSNNQP 373 (436)
Q Consensus 353 ~l~~~~~d~-----~i~iwd~~~~~~ 373 (436)
+++.|+.++ .+.+||..+.+.
T Consensus 254 i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 254 LYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp EEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred EEEECCcCCCcccccEEEEcCCCCeE
Confidence 777777553 488999988763
No 320
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.69 E-value=0.3 Score=43.25 Aligned_cols=236 Identities=12% Similarity=0.066 Sum_probs=120.6
Q ss_pred CCCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCC---CCcEE
Q 013827 140 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---FRNIL 216 (436)
Q Consensus 140 s~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~l 216 (436)
.|||++|++--..|.|++++...+... .... +...+.........|+++|+ +..+.
T Consensus 40 ~pdG~llVter~~G~I~~v~~~~g~~~-~v~~--------------------~~~v~~~g~~GllGia~~Pdf~~~g~lY 98 (347)
T 3das_A 40 LPGGDLLVSSRDEATITRVDAKTGRKT-ELGE--------------------VPGVSPSGEGGLLGIALSPDYASDHMVY 98 (347)
T ss_dssp CTTSCEEEEETTTCEEEEECTTTCCEE-EEEE--------------------CTTCCCBTTBSEEEEEECTTHHHHCEEE
T ss_pred cCCCcEEEEEecCCEEEEEECCCCcEe-eecc--------------------cCceeecCCCCceeeEeccccccCCEEE
Confidence 789998877766899999875433211 1000 00011233567899999995 22233
Q ss_pred EEE--eCCCcEEEEeCCCC----------eEE-EEEc-ccCCCeEEEEEcCCCCCEEEEEEC-------------CCcEE
Q 013827 217 ASA--SADKQVKIWDVAAG----------KCN-LTLE-HHTDKVQAVAWNHHSPQILLSGSF-------------DRSVV 269 (436)
Q Consensus 217 ~s~--~~dg~v~vwd~~~~----------~~~-~~~~-~~~~~v~~~~~~~~~~~~l~s~~~-------------d~~i~ 269 (436)
++- ..++.|.-|.+..+ +.+ ..+. ........|.|.|+| .++++.+. .|.|.
T Consensus 99 v~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~Il 177 (347)
T 3das_A 99 AYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKIL 177 (347)
T ss_dssp EEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEE
T ss_pred EEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEE
Confidence 332 23455666655441 111 1222 111234579999999 76666542 34554
Q ss_pred EEecCCCCC------ccceEee-eCCeeEEEeCCCCCcEEEEE-eCCCcEEEEeCCCCCCC---------CCCCCCcccE
Q 013827 270 MKDARISTH------SGFKWAV-AADVESLAWDPHAEHSFVVS-LEDGTIKGFDIRTAKSD---------PDSTSQQSSF 332 (436)
Q Consensus 270 ~wd~~~~~~------~~~~~~~-~~~i~~~~~~~~~~~~~~~~-~~dg~i~i~d~~~~~~~---------~~~~~~~~~~ 332 (436)
-.+....-. ....+.. -.....++|+|++ .++++- +.++.=.|--+..+... .......++.
T Consensus 178 Ri~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G-~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~ 256 (347)
T 3das_A 178 RMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQ-RLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVA 256 (347)
T ss_dssp EECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTC-CEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSE
T ss_pred EEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCC-CEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcE
Confidence 445443200 0112221 1346789999976 444443 23332233333332210 0001123444
Q ss_pred EEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCc--eeEEeeCCCCCcEEEEEEcCCCCcEEEE
Q 013827 333 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP--SCIASRNPKAGAVFSVAFSEDSPFVLAI 401 (436)
Q Consensus 333 ~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s 401 (436)
.+..+......++|.. + .++...-..+.|....+..... .....+.+..+.+..++..|||. ++++
T Consensus 257 ~~~~~~~ap~G~~~~~-g-~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~-lyv~ 324 (347)
T 3das_A 257 QWSTDEASPSGIAYAE-G-SVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDK-LWLV 324 (347)
T ss_dssp EECTTTCCEEEEEEET-T-EEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTE-EEEE
T ss_pred ecCCCCCCCcceEEEc-C-ceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCc-EEEE
Confidence 5544434567788874 3 5565555566676666654321 11223344456799999999998 4443
No 321
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.67 E-value=0.1 Score=47.14 Aligned_cols=148 Identities=16% Similarity=0.212 Sum_probs=91.6
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEccc----CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc----------
Q 013827 215 ILASASADKQVKIWDVAAGKCNLTLEHH----TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG---------- 280 (436)
Q Consensus 215 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---------- 280 (436)
-++.+- ++.||.-++.....-+.+... -..|..+..+|+| .+|+..+ +..|.+..+..+....
T Consensus 34 ~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q 110 (452)
T 3pbp_A 34 RIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQ 110 (452)
T ss_dssp EEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTE
T ss_pred EEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCC-CEEEEec-CCeEEEEEecCccccCcccccccccc
Confidence 444433 368888887744444444322 2257889999999 7777665 5678888876322110
Q ss_pred -ceEe-------eeCCeeEEEeCCCCCc--EEEEEeCCCcEEEEeCCCCCCCCC-CCCCcccEEEeccCCCeEEEEecCC
Q 013827 281 -FKWA-------VAADVESLAWDPHAEH--SFVVSLEDGTIKGFDIRTAKSDPD-STSQQSSFTLHAHDKAVCTISYNPL 349 (436)
Q Consensus 281 -~~~~-------~~~~i~~~~~~~~~~~--~~~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~ 349 (436)
..+. ...+|..+.|+|-+.. .+++-..|+.|++||+......+. ................|.+++|.++
T Consensus 111 ~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~ 190 (452)
T 3pbp_A 111 IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKD 190 (452)
T ss_dssp EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTT
T ss_pred eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCC
Confidence 0111 2467999999997543 899999999999999987421111 0000001122223367889999996
Q ss_pred CCCEEEEEe--CCCcEEEE
Q 013827 350 VPNLLATGS--TDKMVKLW 366 (436)
Q Consensus 350 ~~~~l~~~~--~d~~i~iw 366 (436)
+ -.|...+ .+|.|+-.
T Consensus 191 ~-lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 191 G-LTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp S-SCEEEEECTTSCEEEEE
T ss_pred C-cEEEEEecCCCCCEEEE
Confidence 6 6666655 77877653
No 322
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.53 E-value=0.1 Score=46.61 Aligned_cols=59 Identities=10% Similarity=0.046 Sum_probs=32.2
Q ss_pred cEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCC------cEEEEeCCCCccccccc
Q 013827 362 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG------KLEIWDTLSDAGISNRF 423 (436)
Q Consensus 362 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~ 423 (436)
.+.+||+.+.+...+.........-.++. -+++ +++.|+.++ .+.++++.+++.+....
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~-i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNS-LLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEE--ETTE-EEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEE--eCCE-EEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 57899999887666555443332222222 3455 677788653 36667888887765443
No 323
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.51 E-value=0.2 Score=40.81 Aligned_cols=183 Identities=8% Similarity=0.031 Sum_probs=95.3
Q ss_pred CcEEEEEeCCCcEEEEeCCCCe------EEEEEcc-cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc-----
Q 013827 213 RNILASASADKQVKIWDVAAGK------CNLTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG----- 280 (436)
Q Consensus 213 ~~~l~s~~~dg~v~vwd~~~~~------~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~----- 280 (436)
+.+|+....| +++.=....+. ....+.. -=..+..++|+|++ .+.++ .+|.+.-.+..+.....
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCc-cEEEE--eCCeEEEECCCCCCcccccccc
Confidence 3567777777 66665555443 2233321 12367799999988 65555 67776666654322221
Q ss_pred ceEee--eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCccc-EEEec-cCCCeEEEEecCCCCCEEEE
Q 013827 281 FKWAV--AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS-FTLHA-HDKAVCTISYNPLVPNLLAT 356 (436)
Q Consensus 281 ~~~~~--~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~~p~~~~~l~~ 356 (436)
...+. -....++.|+|++ .+.++ .||.|.-++-.+.... ...-. ..+-. -=..+..|.|.|+| .+.++
T Consensus 80 t~IG~~Gw~~F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~----~Wl~~a~~vg~~gw~~~~~lff~p~G-~Lyav 151 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTD----NWIARATEVGSGGWSGFKFLFFHPNG-YLYAV 151 (236)
T ss_dssp EEEECSCGGGCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTC----CHHHHSEEEECSSGGGEEEEEECTTS-CEEEE
T ss_pred cEecccccccceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCC----ceeccccEeccCCCCceEEEEECCCc-eEEEE
Confidence 11110 0114789999987 45555 5698877765332110 00000 11111 11467999999998 55555
Q ss_pred EeCCCcEEEEECCCCCc-----eeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 013827 357 GSTDKMVKLWDLSNNQP-----SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 414 (436)
Q Consensus 357 ~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 414 (436)
. |+.++-....+..- .........-...+.+.|.+++. +++.. +| ++|...
T Consensus 152 ~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~-l~~v~--~g--~~Y~~~ 207 (236)
T 1tl2_A 152 H--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT-LFGVQ--GG--KFYEDY 207 (236)
T ss_dssp E--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC-EEEEE--TT--EEEEES
T ss_pred e--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc-EEEEe--CC--eEEecC
Confidence 5 77754433332110 01111112222455577999997 45533 66 444443
No 324
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.25 E-value=1.4 Score=46.02 Aligned_cols=174 Identities=11% Similarity=0.063 Sum_probs=103.9
Q ss_pred cEEEEeCCCCeEEEEEcc-cCCCeEEEE---EcCCCCCEEEEEE----------CCCcEEEEecCCCCCcc-ceEeeeCC
Q 013827 224 QVKIWDVAAGKCNLTLEH-HTDKVQAVA---WNHHSPQILLSGS----------FDRSVVMKDARISTHSG-FKWAVAAD 288 (436)
Q Consensus 224 ~v~vwd~~~~~~~~~~~~-~~~~v~~~~---~~~~~~~~l~s~~----------~d~~i~~wd~~~~~~~~-~~~~~~~~ 288 (436)
.|++.|..+.+.+..+.- ....+.+++ |..+...++++|. ..|.|.++++...+... .....++.
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 477888777776655532 233445544 4333336888876 35789999987432221 12345788
Q ss_pred eeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccE-EEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 013827 289 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF-TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 367 (436)
Q Consensus 289 i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd 367 (436)
+++++--. | + +++|- ...|++|++...+ .+. ....+. .+..+.....+ ++++.|..-..|.++.
T Consensus 888 v~al~~~~-g-~-Lla~i-g~~l~vy~l~~~~---------~L~~~~~~~~-~i~~~~l~~~~-~~I~vgD~~~Sv~~~~ 952 (1158)
T 3ei3_A 888 VYSMVEFN-G-K-LLASI-NSTVRLYEWTTEK---------ELRTECNHYN-NIMALYLKTKG-DFILVGDLMRSVLLLA 952 (1158)
T ss_dssp EEEEEEET-T-E-EEEEE-TTEEEEEEECTTS---------CEEEEEEECC-CSCEEEEEEET-TEEEEEESSBCEEEEE
T ss_pred CEEEeeeC-C-E-EEEEc-CCEEEEEECCCCc---------eEEEEeeccc-cEEEEEEeccC-CEEEEEEhhheEEEEE
Confidence 88887543 3 3 44433 4789999997652 122 111121 12222222234 7899998887777765
Q ss_pred CC--CCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 368 LS--NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 368 ~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
.+ ..+. ...........++++.+-.++. ++.+..+|.|.+.....
T Consensus 953 y~~~~~~L-~~~a~D~~~~~vta~~~ld~~t--~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 953 YKPMEGNF-EEIARDFNPNWMSAVEILDDDN--FLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EETTTTEE-EEEEECCSCBCEEEEEEEETTE--EEEEETTSEEEEEEECT
T ss_pred EEcCCCeE-EEEEeecccccEEEEEEEccCc--EEEEcCCCcEEEEecCC
Confidence 43 3332 2233344556788999887663 66699999999987755
No 325
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.19 E-value=1.5 Score=45.78 Aligned_cols=190 Identities=14% Similarity=0.104 Sum_probs=93.0
Q ss_pred cccCcCcceeecccCCCCCCCCCcEEEEeeC-CCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCc
Q 013827 121 IIIPAFPLCMAWLDCPLKDREKGNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH 199 (436)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 199 (436)
..++.-+.|++..+. ..-...++++|+|.. |++|+|+++.+.+.+....... ..-
T Consensus 550 ~~l~~evscl~i~~~-~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~-----------------------~~~ 605 (1158)
T 3ei3_A 550 TEMEHEVACLDITPL-GDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-----------------------EII 605 (1158)
T ss_dssp EECSSCEEEEECCCC-SSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS-----------------------SCC
T ss_pred cCCCCceEEEEeecC-CCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC-----------------------CCC
Confidence 445556678776322 111224689999997 9999999998544332111000 001
Q ss_pred ccceeEEEecCCCCcEEEEEeCCCcEEEEeC--CCCeEEE---EEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecC
Q 013827 200 TDSVLGLAWNKEFRNILASASADKQVKIWDV--AAGKCNL---TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 274 (436)
Q Consensus 200 ~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~--~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 274 (436)
...|.-+.+ .+..+|..|-.||.+.-+.+ .+++... .+-+ ..++.-..+...+...+++.+ +....++--+
T Consensus 606 p~si~l~~~--~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~ 681 (1158)
T 3ei3_A 606 PRSILMTTF--ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN 681 (1158)
T ss_dssp EEEEEEEEE--TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS
T ss_pred CcEEEEEEe--CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC
Confidence 122333333 23468899999998765554 3443321 2222 345554445444423344333 4444444332
Q ss_pred CCCCccceEeee-CCee-EEEeCCCC-CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC
Q 013827 275 ISTHSGFKWAVA-ADVE-SLAWDPHA-EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 350 (436)
Q Consensus 275 ~~~~~~~~~~~~-~~i~-~~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 350 (436)
. + .. ..... ..+. ...|+... +.-++..+ ++.++|..+.... .-.+..+. -...+..++++|..
T Consensus 682 ~-~-l~-~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~-------~~~~~~ip-L~~Tprri~y~~~~ 748 (1158)
T 3ei3_A 682 H-K-LV-FSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQ-------KLHIRTVP-LYESPRKICYQEVS 748 (1158)
T ss_dssp S-S-EE-EEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSS-------SEEEEEEE-CSSEEEEEEEEGGG
T ss_pred C-c-eE-EeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccC-------CeeEEEEe-CCCCceEEEEcCCC
Confidence 1 1 11 11111 1232 33454321 23344443 4569998876541 11222222 23567788888866
No 326
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.05 E-value=0.38 Score=42.09 Aligned_cols=173 Identities=10% Similarity=0.071 Sum_probs=83.2
Q ss_pred EEEEeCCCCeEEEE--EcccCCCeEEEEEcCCCCCEEEEEECC-------CcEEEEecCCCCCccceEeee---CCeeEE
Q 013827 225 VKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFD-------RSVVMKDARISTHSGFKWAVA---ADVESL 292 (436)
Q Consensus 225 v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~d-------~~i~~wd~~~~~~~~~~~~~~---~~i~~~ 292 (436)
+.+||+.+.+-... +.........+.+ ++ .+++.|+.+ ..+.+||+.+.+-... ...+ .....+
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~ 155 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DD-KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV-KNLPIKVYGHNVI 155 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TT-EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE-CCCSSCEESCEEE
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CC-EEEEEcCccCCCCcccceEEEEeCCCCCEeEC-CCCCCcccccEEE
Confidence 77889887654322 1111111122222 34 677777764 2477788765431110 0001 111122
Q ss_pred EeCCCCCcEEEEEeC------CCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCC-----C
Q 013827 293 AWDPHAEHSFVVSLE------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD-----K 361 (436)
Q Consensus 293 ~~~~~~~~~~~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----~ 361 (436)
. . +..+++.|+. -..+.+||+.+.. ...+..+.........+.+ ++ .+++.|+.+ .
T Consensus 156 ~--~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~ 222 (318)
T 2woz_A 156 S--H-NGMIYCLGGKTDDKKCTNRVFIYNPKKGD-------WKDLAPMKTPRSMFGVAIH--KG-KIVIAGGVTEDGLSA 222 (318)
T ss_dssp E--E-TTEEEEECCEESSSCBCCCEEEEETTTTE-------EEEECCCSSCCBSCEEEEE--TT-EEEEEEEEETTEEEE
T ss_pred E--E-CCEEEEEcCCCCCCCccceEEEEcCCCCE-------EEECCCCCCCcccceEEEE--CC-EEEEEcCcCCCCccc
Confidence 2 2 2356666653 2358899987652 1111111111111122222 33 677777653 3
Q ss_pred cEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCC--------------CcEEEEeCCCCc
Q 013827 362 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK--------------GKLEIWDTLSDA 417 (436)
Q Consensus 362 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--------------g~i~iwd~~~~~ 417 (436)
.+.+||..+.+...+............+.+ ++. +++.|+.+ ..+.+||+.+.+
T Consensus 223 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 223 SVEAFDLKTNKWEVMTEFPQERSSISLVSL--AGS-LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp EEEEEETTTCCEEECCCCSSCCBSCEEEEE--TTE-EEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred eEEEEECCCCeEEECCCCCCcccceEEEEE--CCE-EEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 477899988775443332222222222222 344 67777754 358889987754
No 327
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.97 E-value=0.89 Score=41.15 Aligned_cols=142 Identities=12% Similarity=0.146 Sum_probs=84.1
Q ss_pred CCcEEEEecCCCCCccceEeee-----CCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCC-C--CCcccEEEec
Q 013827 265 DRSVVMKDARISTHSGFKWAVA-----ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS-T--SQQSSFTLHA 336 (436)
Q Consensus 265 d~~i~~wd~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~-~--~~~~~~~~~~ 336 (436)
++.||..++....... ....+ ..+..+..+|+| .+++.. .+..|.+..+..+...... . .......+.-
T Consensus 40 ~n~iR~~~i~~~~~Yk-~L~~~~~i~f~~i~qlvlSpsG-~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l 116 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYH-SLNFSRHLVLDDTFHVISSTSG-DLLCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSI 116 (452)
T ss_dssp TTEEEEEETTTCSSCE-EEECTTTCCCCTTCEEEECTTS-SEEEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEG
T ss_pred CCEEEEEECCCCCcce-EEecCcccccCceeEEEECCCC-CEEEEe-cCCeEEEEEecCccccCcccccccccceeEEEc
Confidence 4666666665433222 22222 257889999988 455555 4558999998843221110 0 0011122222
Q ss_pred ------cCCCeEEEEecCCCC--CEEEEEeCCCcEEEEECCCCCceeE--------EeeCCCCCcEEEEEEcCCCCcEEE
Q 013827 337 ------HDKAVCTISYNPLVP--NLLATGSTDKMVKLWDLSNNQPSCI--------ASRNPKAGAVFSVAFSEDSPFVLA 400 (436)
Q Consensus 337 ------~~~~v~~~~~~p~~~--~~l~~~~~d~~i~iwd~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~l~ 400 (436)
...+|..+.|+|-+. ..|++-..|+.|++||+......+. +........|.+++|.+++-. |.
T Consensus 117 ~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lT-LY 195 (452)
T 3pbp_A 117 DEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLT-LY 195 (452)
T ss_dssp GGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSC-EE
T ss_pred CCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcE-EE
Confidence 256799999999653 4899999999999999986322111 122223356889999997754 44
Q ss_pred EEe--CCCcEEE
Q 013827 401 IGG--SKGKLEI 410 (436)
Q Consensus 401 s~~--~dg~i~i 410 (436)
... ..|.|+-
T Consensus 196 vl~~t~~GDIYA 207 (452)
T 3pbp_A 196 CLNTTEGGDIFA 207 (452)
T ss_dssp EEECTTSCEEEE
T ss_pred EEecCCCCCEEE
Confidence 444 5676654
No 328
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.95 E-value=0.83 Score=40.60 Aligned_cols=157 Identities=11% Similarity=0.073 Sum_probs=92.1
Q ss_pred cceeEEEecC--CCCcEEEEEeC---CCcEEEEeCCCC--e--EEEEEccc-CCCeEEEEEcCCCCCEEEEEE-------
Q 013827 201 DSVLGLAWNK--EFRNILASASA---DKQVKIWDVAAG--K--CNLTLEHH-TDKVQAVAWNHHSPQILLSGS------- 263 (436)
Q Consensus 201 ~~v~~~~~~~--~~~~~l~s~~~---dg~v~vwd~~~~--~--~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~------- 263 (436)
.....+.+.+ ++..+|+.+.. +.+|.+|++... . .+..+.+. -...+.+.+.++| .++++..
T Consensus 112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~ 190 (355)
T 3sre_A 112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPY 190 (355)
T ss_dssp CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCSSHH
T ss_pred eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC-CEEecCCcEeCCcc
Confidence 3455666655 34434555532 457778776543 2 23334332 2357899999998 6666543
Q ss_pred ----------CCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEE
Q 013827 264 ----------FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 333 (436)
Q Consensus 264 ----------~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 333 (436)
..|.|.-+|. . ........-...+.++|+|++..++++-+..+.|..|++..... ......
T Consensus 191 ~~~~e~~~~~~~g~vyr~d~--~-~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~------l~~~~~ 261 (355)
T 3sre_A 191 LKSWEMHLGLAWSFVTYYSP--N-DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT------LTPLRV 261 (355)
T ss_dssp HHHHHHHTTCCCEEEEEECT--T-CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC------EEEEEE
T ss_pred cccchhhccCCccEEEEEEC--C-eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc------EecCEE
Confidence 1244555554 2 22223344466899999999877777777889999999874311 111222
Q ss_pred EeccCCCeEEEEecC-CCCCEEEEEeCC-CcEEEEECC
Q 013827 334 LHAHDKAVCTISYNP-LVPNLLATGSTD-KMVKLWDLS 369 (436)
Q Consensus 334 ~~~~~~~v~~~~~~p-~~~~~l~~~~~d-~~i~iwd~~ 369 (436)
+ ........+++.+ +| ++.+++..+ +.|..|+..
T Consensus 262 ~-~~~g~PDGi~vD~e~G-~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 262 L-SFDTLVDNISVDPVTG-DLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp E-ECSSEEEEEEECTTTC-CEEEEEESCHHHHHSCCTT
T ss_pred E-eCCCCCceEEEeCCCC-cEEEEecCCceEEEEECCC
Confidence 3 2346678899998 57 676666543 344444443
No 329
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.90 E-value=0.094 Score=42.74 Aligned_cols=101 Identities=7% Similarity=0.024 Sum_probs=60.5
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeE------EEEEc--ccCCCeEEEEEcCCCCCEEEEEECCCcEEEEec
Q 013827 202 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKC------NLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 273 (436)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~------~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~ 273 (436)
.+..++|+|+|. +.+. .+|.+.-.+..+... ...+- +... ..++.|.|+| .+.++ .||.|.-++.
T Consensus 42 ~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G-~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 42 NFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNG-YLYAV--SKDKLYKASP 114 (236)
T ss_dssp TCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTS-CEEEE--ETTEEEEESC
T ss_pred cceeEEECCCcc-EEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCC-CEEEe--CCCEEEEeCC
Confidence 677999999874 4444 677777766644211 12221 1111 4788999999 66655 5698887776
Q ss_pred CCCCCccceE---ee-e---CCeeEEEeCCCCCcEEEEEeCCCcEE
Q 013827 274 RISTHSGFKW---AV-A---ADVESLAWDPHAEHSFVVSLEDGTIK 312 (436)
Q Consensus 274 ~~~~~~~~~~---~~-~---~~i~~~~~~~~~~~~~~~~~~dg~i~ 312 (436)
.+........ .. . ..+..+.+.|+| .+.++. |+.+.
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G-~Lyav~--dg~ly 157 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNG-YLYAVH--GQQFY 157 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGGGEEEEEECTTS-CEEEEE--TTEEE
T ss_pred CcCCCCceeccccEeccCCCCceEEEEECCCc-eEEEEe--CCcEE
Confidence 4333221111 11 1 357999999988 455444 77754
No 330
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.88 E-value=0.68 Score=42.88 Aligned_cols=110 Identities=12% Similarity=0.196 Sum_probs=58.4
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceEe---------eeCCeeEEEeCCC---CCcEEEEEeC----
Q 013827 244 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---------VAADVESLAWDPH---AEHSFVVSLE---- 307 (436)
Q Consensus 244 ~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---------~~~~i~~~~~~~~---~~~~~~~~~~---- 307 (436)
.....|+|.|+| +++++-...+.|++++..++.... ... ....+..++|+|+ +..++++-+.
T Consensus 27 ~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~-~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKT-VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEE-EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeE-EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 456799999999 666554433468888765433211 111 2345779999995 4444444432
Q ss_pred --------CCcEEEEeCCCCCCCCCCCCCcccEE-Ee-ccCCCeEEEEecCCCCCEEEEEe
Q 013827 308 --------DGTIKGFDIRTAKSDPDSTSQQSSFT-LH-AHDKAVCTISYNPLVPNLLATGS 358 (436)
Q Consensus 308 --------dg~i~i~d~~~~~~~~~~~~~~~~~~-~~-~~~~~v~~~~~~p~~~~~l~~~~ 358 (436)
...|.-|++........ ..+.+.. +. ........|+|.|+| .+.++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~--~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLE--KPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEE--EEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcC--CcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence 23455555433210000 0011111 21 112357899999999 5555543
No 331
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.83 E-value=0.79 Score=40.74 Aligned_cols=60 Identities=13% Similarity=0.037 Sum_probs=28.8
Q ss_pred cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCC------cEEEEECCCCCceeEEee
Q 013827 310 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK------MVKLWDLSNNQPSCIASR 379 (436)
Q Consensus 310 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~ 379 (436)
.+.+||+.+.. ...+..+......-.++.+ ++ .+++.|+.++ .|.++++++++......+
T Consensus 286 ~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 286 STDIHLWHNGK-------WDKSGELSQGRAYGVSLPW--NN-SLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp CCEEEECC----------CEEEEECSSCCBSSEEEEE--TT-EEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred eEEEEecCCCc-------eeeCCCCCCCcccceeEEe--CC-EEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 47788887652 2333333222222223332 34 6777887643 366678888775444333
No 332
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.80 E-value=0.97 Score=40.25 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=36.0
Q ss_pred CCeeEEEeCCC------CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEE-eccCCCeEEEEecCCCCCEEEE
Q 013827 287 ADVESLAWDPH------AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLAT 356 (436)
Q Consensus 287 ~~i~~~~~~~~------~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~ 356 (436)
..+..+.|... ...++++....+.|...++..... .....+ ......+..+++.|+| .++++
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~rp~~v~~~pdG-~lyv~ 339 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKV-------TEDGRILTDRGQRIRDVRTGPDG-YLYVL 339 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEE-------EEEEEESGGGCCCEEEEEECTTS-CEEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeE-------eeeEEcccCCCCceeEEEECCCC-cEEEE
Confidence 35666777532 135666666778888887764310 001112 2233578899999998 55443
No 333
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.78 E-value=0.88 Score=39.63 Aligned_cols=147 Identities=11% Similarity=0.081 Sum_probs=72.6
Q ss_pred cEEEEEeCC--------CcEEEEeCCCCeEEEE--EcccCCCeEEEEEcCCCCCEEEEEEC-C-----CcEEEEecCCCC
Q 013827 214 NILASASAD--------KQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSF-D-----RSVVMKDARIST 277 (436)
Q Consensus 214 ~~l~s~~~d--------g~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~-d-----~~i~~wd~~~~~ 277 (436)
.+++.|+.+ ..+.+||+.+.+-... +.........+. .++ .+++.|+. + ..+.+||+.+..
T Consensus 100 ~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 100 SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMD-LVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp EEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETT-EEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred EEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECC-EEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 466666632 4589999988753321 111111112222 234 67777776 2 468888887653
Q ss_pred Cccce-Eeee-CCeeEEEeCCCCCcEEEEEeCCC-----cEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCC
Q 013827 278 HSGFK-WAVA-ADVESLAWDPHAEHSFVVSLEDG-----TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 350 (436)
Q Consensus 278 ~~~~~-~~~~-~~i~~~~~~~~~~~~~~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 350 (436)
-.... .... .....+.+ +..+++.|+.++ .+.+||+.+.. ...+..+.........+.+ ++
T Consensus 177 W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~--~~ 244 (315)
T 4asc_A 177 WKELAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITDNK-------WAPFEAFPQERSSLSLVSL--VG 244 (315)
T ss_dssp EEECCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTTTE-------EEEECCCSSCCBSCEEEEE--TT
T ss_pred EEECCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCCCe-------EEECCCCCCcccceeEEEE--CC
Confidence 11100 0011 11122222 236777777654 47888887651 1111111111112222333 33
Q ss_pred CCEEEEEeCC--------------CcEEEEECCCCCceeE
Q 013827 351 PNLLATGSTD--------------KMVKLWDLSNNQPSCI 376 (436)
Q Consensus 351 ~~~l~~~~~d--------------~~i~iwd~~~~~~~~~ 376 (436)
.+++.|+.+ ..+.+||..+.+...+
T Consensus 245 -~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 245 -TLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp -EEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred -EEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 677777653 2377888888765444
No 334
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.65 E-value=0.89 Score=47.78 Aligned_cols=199 Identities=11% Similarity=0.128 Sum_probs=118.6
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccceE-e
Q 013827 206 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-A 284 (436)
Q Consensus 206 ~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~ 284 (436)
.-.+|. .+.+|--. ..++.|+|+++...+..+.- ..+|.-=.|-... .|+-.+ +..|.-|++.....+...+ .
T Consensus 71 AIMnP~-~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~--~l~lVT-~~aVyHW~~~~~s~P~k~fdR 144 (1630)
T 1xi4_A 71 AIMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDR 144 (1630)
T ss_pred hccCCC-cceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC--eeEEEc-CCeEEEeccCCCCccHHHHhc
Confidence 345776 34555544 67899999998877777763 4567666776544 333333 5679999997544332222 2
Q ss_pred e----eCCeeEEEeCCCCCcEEEEEe------CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEec--CCCCC
Q 013827 285 V----AADVESLAWDPHAEHSFVVSL------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN--PLVPN 352 (436)
Q Consensus 285 ~----~~~i~~~~~~~~~~~~~~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~ 352 (436)
+ ...|..-..+++...++++|- -.|.+.+|...... .+.+.+|-.....+... +....
T Consensus 145 ~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~----------sQ~iegha~~F~~~~~~~~~~~~~ 214 (1630)
T 1xi4_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV----------SQPIEGHAASFAQFKMEGNAEEST 214 (1630)
T ss_pred chhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc----------chhhhHhHhhhheeccCCCCCCce
Confidence 2 455777777887755555553 35788999887652 33455565444333332 11112
Q ss_pred EEEEEeC---CCcEEEEECCCC---Ccee----E-EeeC--CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccc
Q 013827 353 LLATGST---DKMVKLWDLSNN---QPSC----I-ASRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 419 (436)
Q Consensus 353 ~l~~~~~---d~~i~iwd~~~~---~~~~----~-~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 419 (436)
+++.+.. .+.+.|.++... .+.. + ..++ .......++..++... ++..-+.-|.|++||+.++.++
T Consensus 215 l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred EEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEEecccchhh
Confidence 3332222 367888888543 1100 0 0111 1233455778888776 5777889999999999999987
Q ss_pred cc
Q 013827 420 SN 421 (436)
Q Consensus 420 ~~ 421 (436)
..
T Consensus 294 ~~ 295 (1630)
T 1xi4_A 294 YM 295 (1630)
T ss_pred hh
Confidence 43
No 335
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.61 E-value=1.5 Score=41.12 Aligned_cols=258 Identities=9% Similarity=0.084 Sum_probs=134.8
Q ss_pred EEEeeCCCcEEEEeCCCCCCCcceeeecccchh--------hhhhcccCCCcccccccccCcccceeEEEec---CCCCc
Q 013827 146 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE--------KKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN---KEFRN 214 (436)
Q Consensus 146 l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~ 214 (436)
|.+|+..|.|+|+-+.+++.+..+.++...+.. ++.... . .....=..|.- .+++. -||+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~-~----~~~~~gD~HHp---~~S~tdg~yDGr- 143 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGD-S----AKFLNGDCHHP---HISMTDGKYDGK- 143 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGG-G----GGCCCCCCCCC---EEEEETTEEEEE-
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhc-C----CCccCCCcCCC---cccccCCeeeeE-
Confidence 678999999999999999988777666543321 111100 0 00000111211 12222 2454
Q ss_pred EEEEEe-CCCcEEEEeCCCCeEEEEEcc-cCCCeEEEEEc--CCCCCEEEEEECC-------CcE---------EEE---
Q 013827 215 ILASAS-ADKQVKIWDVAAGKCNLTLEH-HTDKVQAVAWN--HHSPQILLSGSFD-------RSV---------VMK--- 271 (436)
Q Consensus 215 ~l~s~~-~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~~l~s~~~d-------~~i---------~~w--- 271 (436)
+|+.-. .+..|-..++...++.+.+.- ....+..+.+. |+. .+++.+++. |.. .+|
T Consensus 144 ylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T-~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~i 222 (638)
T 3sbq_A 144 YLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHT-KYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAI 222 (638)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBC-CEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEE
T ss_pred EEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCc-cEEEecceeeccCCCCCcccccCChhhceEEEEE
Confidence 454444 556788888888887666542 45678888886 565 667766642 221 011
Q ss_pred ecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeCC--------------CcEEEEeCCC-------CCCCCCC-----
Q 013827 272 DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED--------------GTIKGFDIRT-------AKSDPDS----- 325 (436)
Q Consensus 272 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d--------------g~i~i~d~~~-------~~~~~~~----- 325 (436)
|..+.+. .......+..-.+...+++...+.++... ..+.++++.. ++.....
T Consensus 223 D~~tm~v-~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ 301 (638)
T 3sbq_A 223 DAETMEM-AFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTP 301 (638)
T ss_dssp ETTTCSE-EEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCC
T ss_pred cCCccEE-EEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCee
Confidence 1111111 01111233344445556554333333211 1234444321 1100000
Q ss_pred ----CC----CcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC-----------CceeEEeeCCCCCcE
Q 013827 326 ----TS----QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN-----------QPSCIASRNPKAGAV 386 (436)
Q Consensus 326 ----~~----~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~~-----------~~~~~~~~~~~~~~v 386 (436)
.. ......+..-......+..+|+|...+++|-.+.++.++|++.. +.......+. .-..
T Consensus 302 ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGP 380 (638)
T 3sbq_A 302 VLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGP 380 (638)
T ss_dssp EEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCE
T ss_pred EEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcc
Confidence 00 01122222233445778999999444445555899999998741 1112223332 3356
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 387 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 387 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
...+|.++|. .+.+---|..|.-|++...
T Consensus 381 lHt~Fd~~G~-aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 381 LHTTFDGRGN-AYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EEEEECSSSE-EEEEETTTTEEEEEEHHHH
T ss_pred cEEEECCCCc-eEeeeeecceEEEEeccHH
Confidence 7889999994 6777778999999999653
No 336
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.33 E-value=1.5 Score=39.12 Aligned_cols=209 Identities=12% Similarity=0.044 Sum_probs=107.1
Q ss_pred cceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCe-EEEEEc---ccCCCeEEEEEcCC---CCCEEEEEEC---C----C
Q 013827 201 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-CNLTLE---HHTDKVQAVAWNHH---SPQILLSGSF---D----R 266 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~~l~s~~~---d----~ 266 (436)
.....++|.|+|. |+.+..+|.|++++ .+++ .+..+. ........|+++|+ +..++++-+. + +
T Consensus 29 ~~P~~ia~~pdG~--l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 29 EVPWSIAPLGGGR--YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp SCEEEEEEEETTE--EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCeEEEEcCCCe--EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 3467899999973 55566779999997 4454 222221 12356889999997 4255554442 3 5
Q ss_pred cEEEEecCCCC--C--ccce-Eeee----CCeeEEEeCCCCCcEEEEEeC-------------CCcEEEEeCCCCCCCCC
Q 013827 267 SVVMKDARIST--H--SGFK-WAVA----ADVESLAWDPHAEHSFVVSLE-------------DGTIKGFDIRTAKSDPD 324 (436)
Q Consensus 267 ~i~~wd~~~~~--~--~~~~-~~~~----~~i~~~~~~~~~~~~~~~~~~-------------dg~i~i~d~~~~~~~~~ 324 (436)
.|..++..... . .... .... .....++|.|+| .++++.+. .|.|.-++.... ....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~ 183 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPAD 183 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTT
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCC
Confidence 67777765431 1 1111 1111 235679999988 45554332 244555554321 1000
Q ss_pred CCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCCC---cEEEEECCC--------C------CceeEEeeCCCCCcEE
Q 013827 325 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK---MVKLWDLSN--------N------QPSCIASRNPKAGAVF 387 (436)
Q Consensus 325 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~---~i~iwd~~~--------~------~~~~~~~~~~~~~~v~ 387 (436)
.+.........++. ....++|+|+...++++-.... .|.+...-. + ................
T Consensus 184 npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~ 262 (354)
T 3a9g_A 184 NPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS 262 (354)
T ss_dssp SSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred CCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence 00001111222333 3468999994325555533322 233322110 0 0011222211223577
Q ss_pred EEEEc-------CCCCcEEEEEeCCCcEEEEeCCCC
Q 013827 388 SVAFS-------EDSPFVLAIGGSKGKLEIWDTLSD 416 (436)
Q Consensus 388 ~~~~~-------~~~~~~l~s~~~dg~i~iwd~~~~ 416 (436)
.++|. .+|. ++++.-..+.|...++...
T Consensus 263 G~~~y~g~~fp~~~G~-l~v~~~~~~~v~~~~~~~~ 297 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGW-LLIACLRGSMLAAVNFGDN 297 (354)
T ss_dssp EEEECCSSSCGGGTTE-EEEEETTTTEEEEEEECGG
T ss_pred ceEEECCCCCcccCCc-EEEEEcCCCEEEEEEECCC
Confidence 88884 4665 5666666778888888753
No 337
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.19 E-value=1.9 Score=39.80 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=31.2
Q ss_pred EEEEEeCCCcEEEEECCC-CCce--eEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEE
Q 013827 353 LLATGSTDKMVKLWDLSN-NQPS--CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLE 409 (436)
Q Consensus 353 ~l~~~~~d~~i~iwd~~~-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~ 409 (436)
+++..-..+.|....+.. +... ....+......+..+++.|||..|+++.+..|.+.
T Consensus 371 lfv~~~~~~~i~~v~l~~~g~~~~~~~~~~~~~~~R~~dv~~gpDG~~Lyv~~d~~G~i~ 430 (454)
T 1cru_A 371 LLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFKSNNRYRDVIASPDGNVLYVLTDTAGNVQ 430 (454)
T ss_dssp EEEEBSSSCCEEEEEECTTSSSEEEEEEEESCCSSCEEEEEECTTSSCEEEEECSSCCEE
T ss_pred EEEeecCCCEEEEEEECCCCCeeeeeeeeecccCCCceeEEECCCCCEEEEEECCCCCCc
Confidence 444433456666666664 2211 11122222358999999999973455555556554
No 338
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.03 E-value=1.6 Score=37.87 Aligned_cols=174 Identities=7% Similarity=-0.009 Sum_probs=86.9
Q ss_pred EecCCCCcEEEEEe----CCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccce
Q 013827 207 AWNKEFRNILASAS----ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK 282 (436)
Q Consensus 207 ~~~~~~~~~l~s~~----~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 282 (436)
.|++++. .|+-.. .+..|...++.... ...+..+.. ..+++++..+..+......|..-++....... +
T Consensus 110 ~~s~~g~-~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~-l 182 (302)
T 3s25_A 110 YASLIGN-YIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEAL-F 182 (302)
T ss_dssp EEEEETT-EEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEE-E
T ss_pred EEEEeCC-EEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEE-E
Confidence 5677765 555443 33456666665433 344433332 45677774444443335678777776554332 1
Q ss_pred EeeeCCeeEEEeCCCCCcEEEEEeCC-CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEe--C
Q 013827 283 WAVAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS--T 359 (436)
Q Consensus 283 ~~~~~~i~~~~~~~~~~~~~~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~ 359 (436)
..+... ..+.|++..++.+...+ ..|..-++.... ...+. ...+ ..|+|++ ..|+-++ .
T Consensus 183 --~~~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~----------~~~Lt--~~~~--~~~~~~g-~~Iy~~~~~~ 244 (302)
T 3s25_A 183 --YDCNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN----------PVVLT--EANI--EHYNVYG-SLIFYQRGGD 244 (302)
T ss_dssp --ECSCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC----------CEECS--CSCE--EEEEEET-TEEEEEECSS
T ss_pred --eCCCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC----------eEEEe--CCCc--ceEEECC-CEEEEEECCC
Confidence 122222 33558776555554443 345555555431 22222 1223 3377777 5665543 2
Q ss_pred CCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 013827 360 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 412 (436)
Q Consensus 360 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 412 (436)
.+.|..-++.......+.. . .+. .+++.+.++..+--..+.|..-+
T Consensus 245 ~~~i~~~~~DG~~r~~l~~--~---~~~--~i~i~~d~Iy~td~~~~~i~~~~ 290 (302)
T 3s25_A 245 NPALCVVKNDGTGFKELAK--G---EFC--NINVTSQYVYFTDFVSNKEYCTS 290 (302)
T ss_dssp SCEEEEEETTSCCCEEEEE--S---CEE--EEEECSSEEEEEETTTCCEEEEE
T ss_pred CcEEEEEECCCCccEEeeC--C---ccc--eEEEeCCEEEEEECCCCeEEEEE
Confidence 4567777776654333322 1 233 34455665555544455554444
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.90 E-value=0.61 Score=45.96 Aligned_cols=194 Identities=10% Similarity=0.126 Sum_probs=98.6
Q ss_pred cEEEEEeCC----CcEEEEeCCCCeEEEEE-c------ccCCCeEEEEEcC-CCCCEEEEEECCC------cEEEEecCC
Q 013827 214 NILASASAD----KQVKIWDVAAGKCNLTL-E------HHTDKVQAVAWNH-HSPQILLSGSFDR------SVVMKDARI 275 (436)
Q Consensus 214 ~~l~s~~~d----g~v~vwd~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~~~l~s~~~d~------~i~~wd~~~ 275 (436)
.+++.|+.+ ..+.+||+.+++....- . .....-.++...+ ++ .+++.|+.++ .+.+||+.+
T Consensus 399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~-~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNN-QLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTT-EEEEECCBSSTTCBCCCCEEEETTT
T ss_pred EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCC-EEEEEcCCCCCCCccccEEEEeCCC
Confidence 477777753 46889998877543332 1 0111112233333 55 6777777543 477888776
Q ss_pred CCCccc-eEeeeCCeeEEEeCCCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCcccEE---EeccCCCeEEEEecCC
Q 013827 276 STHSGF-KWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFT---LHAHDKAVCTISYNPL 349 (436)
Q Consensus 276 ~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~p~ 349 (436)
..-... .......-.+++...++ .+++.|+.++ .+.+||..+.. +..+.. ..........+.+...
T Consensus 478 ~~W~~~~~~p~~R~~h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t~~-------W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 478 REWSMIKSLSHTRFRHSACSLPDG-NVLILGGVTEGPAMLLYNVTEEI-------FKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp TEEEECCCCSBCCBSCEEEECTTS-CEEEECCBCSSCSEEEEETTTTE-------EEECCCSSGGGGSCCBSCEEEEETT
T ss_pred CcEEECCCCCCCcccceEEEEcCC-EEEEECCCCCCCCEEEEECCCCc-------eEEccCCCCCCCcccceeEEEEeCC
Confidence 431110 00111111222322233 6777777654 68999988752 111111 1111222233555654
Q ss_pred CCCEEEEEeC--C-----CcEEEEECCCCC------ceeEEeeC-CCCCcEEEEEEcCCCCcEEEEEeC--------CCc
Q 013827 350 VPNLLATGST--D-----KMVKLWDLSNNQ------PSCIASRN-PKAGAVFSVAFSEDSPFVLAIGGS--------KGK 407 (436)
Q Consensus 350 ~~~~l~~~~~--d-----~~i~iwd~~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~--------dg~ 407 (436)
...+++.|+. + +.+.+||+.+.+ ...+.... ...... +++...++. +++.||. ...
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~-iyv~GG~~~~~~~~~~~~ 627 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRK-LLIVGGTSPSGLFDRTNS 627 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTE-EEEECCBCSSCCCCTTTS
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCE-EEEECCccCCCCCCCCCe
Confidence 2267777765 2 358899998877 33332211 111112 233333355 6777774 345
Q ss_pred EEEEeCCCCcc
Q 013827 408 LEIWDTLSDAG 418 (436)
Q Consensus 408 i~iwd~~~~~~ 418 (436)
+.+||+.+.+-
T Consensus 628 v~~yd~~t~~W 638 (695)
T 2zwa_A 628 IISLDPLSETL 638 (695)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEECCCCeE
Confidence 89999987653
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.42 E-value=1.1 Score=38.96 Aligned_cols=184 Identities=14% Similarity=0.150 Sum_probs=87.0
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEE-EcccCCCeEEEEEcCCCCCEEEEEEC----CC-------cEEEEecCCCCCccc-
Q 013827 215 ILASASADKQVKIWDVAAGKCNLT-LEHHTDKVQAVAWNHHSPQILLSGSF----DR-------SVVMKDARISTHSGF- 281 (436)
Q Consensus 215 ~l~s~~~dg~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~----d~-------~i~~wd~~~~~~~~~- 281 (436)
+++.|+. .+..||..+++.... +..............++ .+++.|+. ++ .+..||..+.+-...
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 94 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQN-QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP 94 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSS-CEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECC-EEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence 4455553 488999988875431 11111111222233444 77777873 12 167778765432110
Q ss_pred -eEeeeCCeeEEEeCCCCCcEEEEEeCC-------CcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCE
Q 013827 282 -KWAVAADVESLAWDPHAEHSFVVSLED-------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL 353 (436)
Q Consensus 282 -~~~~~~~i~~~~~~~~~~~~~~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 353 (436)
..........+.+ +..+++.|+.+ ..+.+||..+.. ...+..+......- +++. .++ .+
T Consensus 95 ~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~-~~~~-~~~-~i 161 (318)
T 2woz_A 95 PLPSARCLFGLGEV---DDKIYVVAGKDLQTEASLDSVLCYDPVAAK-------WSEVKNLPIKVYGH-NVIS-HNG-MI 161 (318)
T ss_dssp CBSSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEEEEEEETTTTE-------EEEECCCSSCEESC-EEEE-ETT-EE
T ss_pred CCCccccccceEEE---CCEEEEEcCccCCCCcccceEEEEeCCCCC-------EeECCCCCCccccc-EEEE-ECC-EE
Confidence 0001111222222 23577777653 247788887652 11111111001111 1222 233 56
Q ss_pred EEEEeC------CCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCC-----CcEEEEeCCCCc
Q 013827 354 LATGST------DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDA 417 (436)
Q Consensus 354 l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~ 417 (436)
++.|+. -..+.+||..+.+...+............+.+ ++. +++.|+.+ ..+.+||+.+.+
T Consensus 162 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 162 YCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGK-IVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCE-EEEEcCcCCCCccceEEEEECCCCe
Confidence 666653 23589999998765444322222212222222 444 67777654 347788887654
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.24 E-value=3.8 Score=40.26 Aligned_cols=104 Identities=10% Similarity=0.009 Sum_probs=57.1
Q ss_pred cEEEEEeCCC--cEEEEeCCCCeEEEEE-----cccCCCeEEEEEcCCCCCEEEEEECC-------CcEEEEecCCCCC-
Q 013827 214 NILASASADK--QVKIWDVAAGKCNLTL-----EHHTDKVQAVAWNHHSPQILLSGSFD-------RSVVMKDARISTH- 278 (436)
Q Consensus 214 ~~l~s~~~dg--~v~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~s~~~d-------~~i~~wd~~~~~~- 278 (436)
.+++.|+.++ .+.+||+.+.+-...- ........++.+....+.+++.|+.+ +.+..||+.+..-
T Consensus 502 ~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~ 581 (695)
T 2zwa_A 502 NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENAT 581 (695)
T ss_dssp CEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSS
T ss_pred EEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccc
Confidence 5777777655 6999999887643221 11122223355555522677777762 4588899887762
Q ss_pred ----ccceEee--e--CCeeEEEeCCCCCcEEEEEeC--------CCcEEEEeCCCC
Q 013827 279 ----SGFKWAV--A--ADVESLAWDPHAEHSFVVSLE--------DGTIKGFDIRTA 319 (436)
Q Consensus 279 ----~~~~~~~--~--~~i~~~~~~~~~~~~~~~~~~--------dg~i~i~d~~~~ 319 (436)
-...... . .....+.+. + ..+++.|+. ...+.+||+.+.
T Consensus 582 ~~~~W~~~~~~p~~~R~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 582 EPITVIKKLQHPLFQRYGSQIKYIT-P-RKLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp CCEEEEEEEECGGGCCBSCEEEEEE-T-TEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred cceEEEEcCCCCCCCcccceEEEeC-C-CEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 0101110 1 111222222 1 357777764 345888998765
No 342
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.03 E-value=5.3 Score=39.68 Aligned_cols=191 Identities=10% Similarity=0.091 Sum_probs=108.7
Q ss_pred ccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc
Q 013827 200 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS 279 (436)
Q Consensus 200 ~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 279 (436)
...|.++.-..+| .|-.|+.+| +..||..+.+...........|.++.. .++ .|..++.+ -|..+|..+....
T Consensus 62 ~~~i~~i~~d~~g--~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g--~lWigt~~-Gl~~~~~~~~~~~ 134 (758)
T 3ott_A 62 NTRIYCGVIIDNT--YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD--TLWLGALN-GLYTYQLQSRKLT 134 (758)
T ss_dssp SSCEEEEEEETTT--EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT--EEEEEETT-EEEEEETTTCCEE
T ss_pred CceEEEEEEcCCC--cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC--cEEEEcCC-cceeEeCCCCeEE
Confidence 3568888877764 566666665 789998876533211112235776654 344 35556655 5778887654432
Q ss_pred cceE----eeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEec------cCCCeEEEEecCC
Q 013827 280 GFKW----AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA------HDKAVCTISYNPL 349 (436)
Q Consensus 280 ~~~~----~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~p~ 349 (436)
.... .....|.++....++. +.+++.+ -+..|+..+.. ...+.. ....|.++...++
T Consensus 135 ~~~~~~~~l~~~~i~~i~~d~~g~--lWigt~~-Gl~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~i~~d~~ 201 (758)
T 3ott_A 135 SFDTRRNGLPNNTIYSIIRTKDNQ--IYVGTYN-GLCRYIPSNGK----------FEGIPLPVHSSQSNLFVNSLLEDTT 201 (758)
T ss_dssp EECHHHHCCSCSCEEEEEECTTCC--EEEEETT-EEEEEETTTTE----------EEEECCCCCTTCSSCCEEEEEEETT
T ss_pred EeccCCCCcCCCeEEEEEEcCCCC--EEEEeCC-CHhhCccCCCc----------eEEecCCCccccccceeEEEEEECC
Confidence 1100 1124577888777663 4445554 47778876541 111110 1224778877776
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 013827 350 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 417 (436)
Q Consensus 350 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 417 (436)
+ ..|-.|+. +.+..+|..+.+........ ...|.++...++|. +.+ |+. +-+.+++..+++
T Consensus 202 ~-~~lWigt~-~Gl~~~~~~~~~~~~~~~l~--~~~i~~i~~d~~g~-lWi-gT~-~Gl~~~~~~~~~ 262 (758)
T 3ott_A 202 R-QCVWIGTE-GYLFQYFPSTGQIKQTEAFH--NNSIKSLALDGNGD-LLA-GTD-NGLYVYHNDTTP 262 (758)
T ss_dssp T-TEEEEEEE-EEEEEEETTTTEEEEEEEEE--EEEEEEEEECTTCC-EEE-EET-TEEEEECCTTSC
T ss_pred C-CEEEEEEC-CCCeEEcCCCCeEEeccCCC--CCeEEEEEEcCCCC-EEE-EeC-CceeEEecCCCc
Confidence 5 44444543 45888998776532222221 23588888888887 344 554 458888876654
No 343
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.78 E-value=3.4 Score=36.54 Aligned_cols=159 Identities=13% Similarity=0.096 Sum_probs=83.3
Q ss_pred EEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCccc------eEeeeCCeeEEEeCCC---CCcEEEEEe--
Q 013827 238 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF------KWAVAADVESLAWDPH---AEHSFVVSL-- 306 (436)
Q Consensus 238 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~------~~~~~~~i~~~~~~~~---~~~~~~~~~-- 306 (436)
.+...-...+.|+|.|+| .++++--..|.|++++......... ..........++++|+ +..++++-+
T Consensus 26 ~va~gL~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EeecCCCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 343334567899999999 7666554489999988654432111 1112456789999995 333444322
Q ss_pred CCCcEEEEeCCCCCCC-CCCCCCcccE-EEe-ccCCCeEEEEecCCCCCEEEEEeC-------------CCcEEEEECCC
Q 013827 307 EDGTIKGFDIRTAKSD-PDSTSQQSSF-TLH-AHDKAVCTISYNPLVPNLLATGST-------------DKMVKLWDLSN 370 (436)
Q Consensus 307 ~dg~i~i~d~~~~~~~-~~~~~~~~~~-~~~-~~~~~v~~~~~~p~~~~~l~~~~~-------------d~~i~iwd~~~ 370 (436)
.++.|.-|.+...... ......+.+. .+. ........|.|.|++ .+.++.+. -|.|.-.+...
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG 183 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDG 183 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence 3445655655542110 0000111111 121 112234679999998 66665432 24444445442
Q ss_pred CC-------ceeEEeeCCCCCcEEEEEEcCCCCcEEEE
Q 013827 371 NQ-------PSCIASRNPKAGAVFSVAFSEDSPFVLAI 401 (436)
Q Consensus 371 ~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 401 (436)
.- ...++ ..+|. ....++|+|+|. ++++
T Consensus 184 ~ip~~nPf~~~~i~-a~G~R-Np~Gla~dp~G~-L~~~ 218 (347)
T 3das_A 184 EPAPGNPFPGSPVY-SYGHR-NVQGLAWDDKQR-LFAS 218 (347)
T ss_dssp SBCTTCSSTTCCEE-EBCCS-BCCEEEECTTCC-EEEE
T ss_pred CccCCCCCCCCeEE-eeCCC-CcceEEECCCCC-EEEE
Confidence 20 01122 23444 356899999987 4543
No 344
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.73 E-value=0.22 Score=43.98 Aligned_cols=194 Identities=10% Similarity=0.028 Sum_probs=100.1
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEEccc-CCCeEEEEE--cCCCCCEEEEE-ECCCcEEEEecCCCCCccceEeee---
Q 013827 214 NILASASADKQVKIWDVAAGKCNLTLEHH-TDKVQAVAW--NHHSPQILLSG-SFDRSVVMKDARISTHSGFKWAVA--- 286 (436)
Q Consensus 214 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~--~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~--- 286 (436)
.+++.++.||.|.-.|.++|+....++.. ..++....- .+.+...++.. +.||.|..++..++.... .....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~-~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL-PLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE-EEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe-eeccccce
Confidence 37899999999999999999999888653 123322110 01121333333 579999999987653221 11111
Q ss_pred --CCeeE---EEe-CC---CCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccC--CC-----eEEEEec---
Q 013827 287 --ADVES---LAW-DP---HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD--KA-----VCTISYN--- 347 (436)
Q Consensus 287 --~~i~~---~~~-~~---~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~-----v~~~~~~--- 347 (436)
.++.. ... .+ .....+++|+.+|.+...|++++ +.+..+.... .. ..|....
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG---------~~~W~~~~~~~~~~~~~~~e~~~~~~d~~ 160 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNG---------EIISAFGPGSKNGYFGSQSVDCSPEEKIK 160 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTC---------CEEEEESTTCBCC----------------
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCC---------cEEEEEecCCCcccccccccccccccccc
Confidence 11111 000 00 01247899999999999999998 4455543221 00 0011110
Q ss_pred C-CCCCEEEEEeCCCcEEEEECCCCCcee--EEeeCCCCC--cE-EEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccc
Q 013827 348 P-LVPNLLATGSTDKMVKLWDLSNNQPSC--IASRNPKAG--AV-FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 420 (436)
Q Consensus 348 p-~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~--~v-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 420 (436)
. .....++.+..+..+.+.+ ++++.-. ......... .+ ..-..+.|+.+ ++ ++.||.|.-+|..+++.+.
T Consensus 161 ~d~~~~~v~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~-~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 161 LQECENMIVIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IA-PFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp ----CCEEEEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EE-EETTTEEEEECSTTCCEEE
T ss_pred cccCCCeEEEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EE-ECCCCEEEEEECCCCcEEE
Confidence 0 1124677777777776666 3332100 000011000 00 00011234663 33 7888999999988887664
No 345
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=91.34 E-value=6.6 Score=33.91 Aligned_cols=103 Identities=9% Similarity=0.022 Sum_probs=54.2
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECC--CcEEEEecCCCCCccceE
Q 013827 206 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD--RSVVMKDARISTHSGFKW 283 (436)
Q Consensus 206 ~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~ 283 (436)
.+|+++++.+..+......|.+-++..+.....+.+ ... ..+.|++ ..|+-.... ..|..-++........
T Consensus 150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g-~~iy~t~~~~~~~I~~~~ldG~~~~~L-- 222 (302)
T 3s25_A 150 FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDD-TNVYYMDVNRDNAIVHVNINNPNPVVL-- 222 (302)
T ss_dssp CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEET-TEEEEEEGGGTTEEEEECSSSCCCEEC--
T ss_pred eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecC-CEEEEEEcCCCcEEEEEECCCCCeEEE--
Confidence 356777765555544467888888877665444332 222 3456888 555555443 2455556554443221
Q ss_pred eeeCCeeEEEeCCCCCcEEEEEe-CCCcEEEEeCCC
Q 013827 284 AVAADVESLAWDPHAEHSFVVSL-EDGTIKGFDIRT 318 (436)
Q Consensus 284 ~~~~~i~~~~~~~~~~~~~~~~~-~dg~i~i~d~~~ 318 (436)
....+ ..|+|.+..++.+.. ..+.|..-++..
T Consensus 223 -t~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 223 -TEANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp -SCSCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred -eCCCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 12223 236776754444322 235566555544
No 346
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=90.10 E-value=16 Score=36.23 Aligned_cols=185 Identities=12% Similarity=0.196 Sum_probs=101.3
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEc-----ccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC
Q 013827 202 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-----HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS 276 (436)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 276 (436)
.|.++.. .+| .|..++.+ -+..+|..+++.. .+. .....|.++....++ .+.+ ++.+ -|..+|..+.
T Consensus 104 ~i~~i~~-~~g--~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g-~lWi-gt~~-Gl~~~~~~~~ 175 (758)
T 3ott_A 104 DVRTMAL-QGD--TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDN-QIYV-GTYN-GLCRYIPSNG 175 (758)
T ss_dssp CEEEEEE-ETT--EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTC-CEEE-EETT-EEEEEETTTT
T ss_pred eEEEEEe-cCC--cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCC-CEEE-EeCC-CHhhCccCCC
Confidence 4666654 343 45556655 5888998776543 331 123468888888777 5444 5544 4777776654
Q ss_pred CCccceEe-----eeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCC
Q 013827 277 THSGFKWA-----VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP 351 (436)
Q Consensus 277 ~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 351 (436)
........ ....|.++...+++. .+..|+. +-+..+|..+... .....+ ....|.++...+++
T Consensus 176 ~~~~~~~~~~~~~~~~~i~~i~~d~~~~-~lWigt~-~Gl~~~~~~~~~~-------~~~~~l--~~~~i~~i~~d~~g- 243 (758)
T 3ott_A 176 KFEGIPLPVHSSQSNLFVNSLLEDTTRQ-CVWIGTE-GYLFQYFPSTGQI-------KQTEAF--HNNSIKSLALDGNG- 243 (758)
T ss_dssp EEEEECCCCCTTCSSCCEEEEEEETTTT-EEEEEEE-EEEEEEETTTTEE-------EEEEEE--EEEEEEEEEECTTC-
T ss_pred ceEEecCCCccccccceeEEEEEECCCC-EEEEEEC-CCCeEEcCCCCeE-------EeccCC--CCCeEEEEEEcCCC-
Confidence 32111111 112377787776553 4444554 4578888765410 111111 23457788877766
Q ss_pred CEEEEEeCCCcEEEEECCCCCceeEEeeC-----CCCCcEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 013827 352 NLLATGSTDKMVKLWDLSNNQPSCIASRN-----PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 411 (436)
Q Consensus 352 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 411 (436)
.+. .|+. +-+.+++..+.+........ -....|.++....+|. +.+ |+..| +.++
T Consensus 244 ~lW-igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWi-GT~~G-l~~~ 303 (758)
T 3ott_A 244 DLL-AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWL-GTDYG-ISLS 303 (758)
T ss_dssp CEE-EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEE-EESSS-EEEE
T ss_pred CEE-EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEE-EeCCc-cccc
Confidence 443 3444 45888888765532221111 1123589999888887 343 55556 4444
No 347
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=89.47 E-value=9.2 Score=32.58 Aligned_cols=187 Identities=16% Similarity=0.136 Sum_probs=101.4
Q ss_pred cceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc
Q 013827 201 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG 280 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 280 (436)
..|..++.... ..++. . ||.|..|-......+..-..-...|..++..... .+.-. +|.|..|-........
T Consensus 63 ~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~h---s~al~-~G~v~~wG~n~~gqlg 134 (282)
T 3qhy_B 63 SGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWA---SYALK-DGKVIAWGDDSDGQTT 134 (282)
T ss_dssp SCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTE---EEEEE-TTEEEEEECCTTSTTS
T ss_pred CCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCE---EEEEe-CCeEEEecCCCCCcCC
Confidence 35777776554 34444 4 8999999765321111111123467777776543 33344 9999999876544332
Q ss_pred ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCC
Q 013827 281 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD 360 (436)
Q Consensus 281 ~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 360 (436)
........+..++.-.. ..+.-. ||.|..|-........ .+ ..-...|..++-... ..++. .|
T Consensus 135 ~~~~~~~~i~~i~~G~~---~~~~l~-~G~v~~wG~n~~gqlg-----~p----~~~~~~v~~i~~G~~--hs~al--~~ 197 (282)
T 3qhy_B 135 VPAEAQSGVTALDGGVY---TALAVK-NGGVIAWGDNYFGQTT-----VP----AEAQSGVDDVAGGIF--HSLAL--KD 197 (282)
T ss_dssp CCGGGGSSEEEEEECSS---EEEEEE-TTEEEEEECCTTSTTS-----CC----GGGGSSEEEEEECSS--EEEEE--ET
T ss_pred CCccCCCCeEEEEcccC---EEEEEE-CCEEEEecCCCCCCCC-----Cc----eecCCCeEEEEecCC--EEEEE--EC
Confidence 22223455777766542 233334 7999999765542211 00 011345777766543 34444 59
Q ss_pred CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 013827 361 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 418 (436)
Q Consensus 361 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 418 (436)
|.|+.|-.......-+ . ......|..++...... ++.. ||.|+.|-.....+
T Consensus 198 G~v~~wG~n~~gqlg~-p-~~~~~~v~~i~~G~~h~--~al~--~g~v~~wG~n~~gq 249 (282)
T 3qhy_B 198 GKVIAWGDNRYKQTTV-P-TEALSGVSAIASGEWYS--LALK--NGKVIAWGSSRTAP 249 (282)
T ss_dssp TEEEEEECCTTSTTCC-C-GGGGSSCCEEEECSSCE--EEEE--TTEEEEESTTCCCC
T ss_pred CeEEEEECCCCCCCCC-C-cccCCCceEEEcCCCEE--EEEE--CCEEEEecCCCCcc
Confidence 9999997654321111 0 01123466776655442 4433 89999997665443
No 348
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=89.09 E-value=12 Score=33.50 Aligned_cols=99 Identities=9% Similarity=-0.001 Sum_probs=47.4
Q ss_pred cEEEEEeCCCcEEEEeCCC-CeEEEEE--cccCCCeEEEEEcCCCCCEEEEEECCC----cEEEEecCCCCC---ccce-
Q 013827 214 NILASASADKQVKIWDVAA-GKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDR----SVVMKDARISTH---SGFK- 282 (436)
Q Consensus 214 ~~l~s~~~dg~v~vwd~~~-~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~d~----~i~~wd~~~~~~---~~~~- 282 (436)
..|..|+..| +.+++... ++.-..+ ......|.+|.+.|..+..+.++...| .|...+ ..+.. ....
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP 100 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence 3677777777 55554332 2222221 123457999999983223444455444 343332 11111 1100
Q ss_pred -Ee---------eeCCeeEEEeCCCC-CcEEEEEeCCCcEEEE
Q 013827 283 -WA---------VAADVESLAWDPHA-EHSFVVSLEDGTIKGF 314 (436)
Q Consensus 283 -~~---------~~~~i~~~~~~~~~-~~~~~~~~~dg~i~i~ 314 (436)
.. ....+.++++.|.. +..+.++...+.|...
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S 143 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRS 143 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEE
Confidence 00 01246778888743 3456666555655444
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=88.33 E-value=12 Score=34.49 Aligned_cols=113 Identities=11% Similarity=0.134 Sum_probs=61.8
Q ss_pred CCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEe---------ccCCCeEEEEecCC---CCCEE
Q 013827 287 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---------AHDKAVCTISYNPL---VPNLL 354 (436)
Q Consensus 287 ~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~p~---~~~~l 354 (436)
.....++|.|++...++++...|.|++++...... ...+..+. ........|+|+|+ ...+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~------~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lY 87 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF------KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLY 87 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC------SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCee------eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEE
Confidence 45789999998853466667889999997532210 01111111 12457889999996 21333
Q ss_pred EEEeC--C----------CcEEEEECCCC--------CceeEEeeC--CCCCcEEEEEEcCCCCcEEEEEeCCC
Q 013827 355 ATGST--D----------KMVKLWDLSNN--------QPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSKG 406 (436)
Q Consensus 355 ~~~~~--d----------~~i~iwd~~~~--------~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg 406 (436)
++-+. + ..|.-|.+... ....+.... .....-..|+|.|||. |+++.+..+
T Consensus 88 v~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd~~ 160 (463)
T 2wg3_C 88 VSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGDGM 160 (463)
T ss_dssp EEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECCTT
T ss_pred EEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCCCC
Confidence 33322 1 13444555421 112222222 2223467899999997 566655443
No 350
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=87.31 E-value=20 Score=33.86 Aligned_cols=103 Identities=10% Similarity=-0.025 Sum_probs=66.1
Q ss_pred cEEEEecCC----CCCccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCC--C-CCCcccEEEeccCC
Q 013827 267 SVVMKDARI----STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD--S-TSQQSSFTLHAHDK 339 (436)
Q Consensus 267 ~i~~wd~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~--~-~~~~~~~~~~~~~~ 339 (436)
.+.+.|.+. ................+..+|+|..+++.|-.+.++.++|+++...... . .....+.....-..
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 355666654 2333344566677888999999987777888899999999985311000 0 00111111111234
Q ss_pred CeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 013827 340 AVCTISYNPLVPNLLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 340 ~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~ 370 (436)
.....+|.++| +...+-.-|..|.-|++..
T Consensus 379 GPlHt~Fd~~G-~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 379 GPLHTTFDGRG-NAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp CEEEEEECSSS-EEEEEETTTTEEEEEEHHH
T ss_pred cccEEEECCCC-ceEeeeeecceEEEEeccH
Confidence 56778999988 6666777899999999864
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=83.17 E-value=25 Score=31.40 Aligned_cols=155 Identities=12% Similarity=0.081 Sum_probs=73.1
Q ss_pred cceeEEEecCCCCcEEEEEeCCC----cEEEEeCCCCeEEEEEcc--------------cCCCeEEEEEcCCC-CCEEEE
Q 013827 201 DSVLGLAWNKEFRNILASASADK----QVKIWDVAAGKCNLTLEH--------------HTDKVQAVAWNHHS-PQILLS 261 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg----~v~vwd~~~~~~~~~~~~--------------~~~~v~~~~~~~~~-~~~l~s 261 (436)
..|.+|++.|.....|..++..| .|...+ ..++.-..+.. ....|.++++.|.. +..+..
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 46999999982223344444444 343332 33332222211 11257788998732 244555
Q ss_pred EECCCcEEEEecCCCC--Cccce----------------EeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCC
Q 013827 262 GSFDRSVVMKDARIST--HSGFK----------------WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP 323 (436)
Q Consensus 262 ~~~d~~i~~wd~~~~~--~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~ 323 (436)
+...+.|...+-.... ..... ......+.++.++|..+..+.++..++.|...+-. ++
T Consensus 134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~--- 209 (394)
T 3b7f_A 134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDA-GT--- 209 (394)
T ss_dssp EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESST-TS---
T ss_pred EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCC-CC---
Confidence 5555555443221111 11000 00123477899988544445555544444333211 11
Q ss_pred CCCCCcccEEEec-------------cCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 013827 324 DSTSQQSSFTLHA-------------HDKAVCTISYNPLVPNLLATGSTDKMVKLWD 367 (436)
Q Consensus 324 ~~~~~~~~~~~~~-------------~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd 367 (436)
....+.. ....+..+.+.|..+..|.++...+ |...+
T Consensus 210 ------tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 210 ------DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD 259 (394)
T ss_dssp ------SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred ------CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence 0111100 0134788999997546777776554 44443
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=81.02 E-value=34 Score=31.51 Aligned_cols=74 Identities=8% Similarity=-0.066 Sum_probs=35.8
Q ss_pred cccEEEeccC-CCeEEEEecCCC-----CCEEEEEeCCCcEEEEECCCCCce-eEEee---------CCCCCcEEEEEEc
Q 013827 329 QSSFTLHAHD-KAVCTISYNPLV-----PNLLATGSTDKMVKLWDLSNNQPS-CIASR---------NPKAGAVFSVAFS 392 (436)
Q Consensus 329 ~~~~~~~~~~-~~v~~~~~~p~~-----~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~---------~~~~~~v~~~~~~ 392 (436)
.++..+..|. ..+..+.|-... ...++.+...+.|....+...... ....+ ......+..+...
T Consensus 265 ~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~ 344 (463)
T 2wg3_C 265 PSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGED 344 (463)
T ss_dssp CCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEEC
T ss_pred CCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEEC
Confidence 3455554332 467777775321 112444555577666665433211 11111 1123578999999
Q ss_pred CCCCcEEEEEe
Q 013827 393 EDSPFVLAIGG 403 (436)
Q Consensus 393 ~~~~~~l~s~~ 403 (436)
|||. |+++..
T Consensus 345 pdG~-Lyv~~~ 354 (463)
T 2wg3_C 345 ELGE-VYILSS 354 (463)
T ss_dssp TTCC-EEEEEE
T ss_pred CCCC-EEEEec
Confidence 9998 455443
No 353
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=78.80 E-value=55 Score=32.59 Aligned_cols=153 Identities=11% Similarity=0.125 Sum_probs=80.7
Q ss_pred ccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEccc-------CCCeEEEEEcCCCCCEEEEEECCCc----E
Q 013827 200 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH-------TDKVQAVAWNHHSPQILLSGSFDRS----V 268 (436)
Q Consensus 200 ~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s~~~d~~----i 268 (436)
...|.+|+++|..+..++.+...+.|...+ ..++.-..+..+ ...+.+|+++|..+..++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 458999999997666777787777776655 344443333322 2469999999865445555443211 2
Q ss_pred EEEecCCCCCccceEee--------e--CCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEe---
Q 013827 269 VMKDARISTHSGFKWAV--------A--ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--- 335 (436)
Q Consensus 269 ~~wd~~~~~~~~~~~~~--------~--~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--- 335 (436)
.||-.......-..... . ..+..++++|..+..++++...+.| |--.... +....+.
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG--------~TW~~~~~~~ 162 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRA--------KTWTNVTSIP 162 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTT--------SSCEEETTSC
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCC--------cccCCCccCc
Confidence 33333222111101110 0 1245678887655667776644433 3222221 1111111
Q ss_pred ---ccCCCeEEEEecCCCCCEEEEEeCC-CcE
Q 013827 336 ---AHDKAVCTISYNPLVPNLLATGSTD-KMV 363 (436)
Q Consensus 336 ---~~~~~v~~~~~~p~~~~~l~~~~~d-~~i 363 (436)
.....+..+.++|..+..++++..+ +.|
T Consensus 163 ~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~v 194 (789)
T 1sqj_A 163 DAFTNGIGYTSVIFDPERNGTIYASATAPQGM 194 (789)
T ss_dssp CCCSTTTCEEEEEECTTSTTCEEEEESSTTCE
T ss_pred cccCCCCCeEEEEECCCCCCEEEEEEcCCCeE
Confidence 1124578899998655566666654 444
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.56 E-value=43 Score=34.21 Aligned_cols=38 Identities=21% Similarity=0.531 Sum_probs=32.0
Q ss_pred cceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEE
Q 013827 201 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL 239 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 239 (436)
..+.+++..++. .++++-+.|+++|+|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~-~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTT-TEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCC-cEEEEEECCCEEEEEECCCCCeEeee
Confidence 356777777774 69999999999999999999988765
No 355
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=78.27 E-value=9.2 Score=33.58 Aligned_cols=113 Identities=12% Similarity=0.082 Sum_probs=65.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEecc-CCCeEEEEe--cCCCCCEEEEE-eCCCcEEEEECCCCCcee
Q 013827 300 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISY--NPLVPNLLATG-STDKMVKLWDLSNNQPSC 375 (436)
Q Consensus 300 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~--~p~~~~~l~~~-~~d~~i~iwd~~~~~~~~ 375 (436)
.++++++.||.|.-+|..++ +....+... ..++....- .+.++..++.. +.||.|..++..++....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG---------~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~ 81 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNG---------HIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL 81 (339)
T ss_dssp EEEEEEETTSCEEEEETTTT---------EEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCC---------cEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe
Confidence 47899999999999999888 445555443 122221110 01121333333 589999999988774322
Q ss_pred EEeeCC--CCCcEEE---EEE------cCCCCcEEEEEeCCCcEEEEeCCCCccccccc
Q 013827 376 IASRNP--KAGAVFS---VAF------SEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 423 (436)
Q Consensus 376 ~~~~~~--~~~~v~~---~~~------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 423 (436)
...... ...++.. ... +.++ .+.+|+.+|.+.-.|+.+|+.+.+.-
T Consensus 82 ~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g--~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 82 PLSIRQLVSTSPLHLKTNIVVNDSGKIVEDE--KVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp EEEHHHHHTTCSEEEECC----------CCE--EEEECEEEEEEEEEETTTCCEEEEES
T ss_pred eeccccceeccccccCCCceeecccccccCC--EEEEEecCCEEEEEECCCCcEEEEEe
Confidence 222111 1222221 001 1333 47779999999999999999887653
No 356
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=76.61 E-value=61 Score=32.28 Aligned_cols=153 Identities=14% Similarity=0.088 Sum_probs=75.0
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC--CCccceEe----eeCCeeEEEeCCCCCcEEEEEeCCCc----EE
Q 013827 243 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--THSGFKWA----VAADVESLAWDPHAEHSFVVSLEDGT----IK 312 (436)
Q Consensus 243 ~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~dg~----i~ 312 (436)
...|.+|+++|..+..++++...+.|...+=... +.+..... ....+.+++++|.....++++..+.. -.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~ 93 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA 93 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence 4689999999986677777777776655432111 01110000 13468999999865455555543211 23
Q ss_pred EEeCCCCCCCCCCCCCcccEEEec---------cCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC-CCc-eeEEeeC-
Q 013827 313 GFDIRTAKSDPDSTSQQSSFTLHA---------HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN-NQP-SCIASRN- 380 (436)
Q Consensus 313 i~d~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~p~~~~~l~~~~~d~~i~iwd~~~-~~~-~~~~~~~- 380 (436)
||--.... +....... ....+..++++|..+..++.+...+.| |.... ++. ..+....
T Consensus 94 v~~S~DgG--------~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~ 163 (789)
T 1sqj_A 94 FYVSEDRG--------QSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPD 163 (789)
T ss_dssp EEEESSTT--------SEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCC
T ss_pred EEEECCCC--------CcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCcc
Confidence 33322221 11111110 011345688888655667777644443 33222 221 1111111
Q ss_pred --CCCCcEEEEEEcCCCCcEEEEEeCC
Q 013827 381 --PKAGAVFSVAFSEDSPFVLAIGGSK 405 (436)
Q Consensus 381 --~~~~~v~~~~~~~~~~~~l~s~~~d 405 (436)
.....+..+.++|.....+..+..+
T Consensus 164 ~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 164 AFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred ccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 1124578899988543234445443
No 357
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=75.67 E-value=65 Score=31.76 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=59.7
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEccc-------CCCeEEEEEcCCCCCEEEEEECC-------Cc
Q 013827 202 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH-------TDKVQAVAWNHHSPQILLSGSFD-------RS 267 (436)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s~~~d-------~~ 267 (436)
.|..|+++|..+..+..+...+.|...+ ..++.-..+..+ ...|.+|+++|..+..++.+... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 7999999998656677777667666665 334433333222 24589999998554445444321 12
Q ss_pred EEEEecCCCCCccceEeee----------CCeeEEEeCCCCCcEEEEEeCC
Q 013827 268 VVMKDARISTHSGFKWAVA----------ADVESLAWDPHAEHSFVVSLED 308 (436)
Q Consensus 268 i~~wd~~~~~~~~~~~~~~----------~~i~~~~~~~~~~~~~~~~~~d 308 (436)
..||........-...... ..+..++++|..+..++++...
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 3455443322211111110 1246789998766677777643
No 358
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=73.21 E-value=42 Score=28.41 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=88.3
Q ss_pred cceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCcc
Q 013827 201 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG 280 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 280 (436)
..|..++.... ..+.-. ||.|..|-......+-........|..++.-... .++ -. ||.|..|-........
T Consensus 102 ~~v~~ia~G~~---hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~-l~-~G~v~~wG~n~~gqlg 173 (282)
T 3qhy_B 102 SGVDAIAAGAW---ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALA-VK-NGGVIAWGDNYFGQTT 173 (282)
T ss_dssp SSEEEEEEETT---EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEE-EE-TTEEEEEECCTTSTTS
T ss_pred CCeEEEECcCC---EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEE-EE-CCEEEEecCCCCCCCC
Confidence 36777777654 333334 8999999765421111111123457777665433 222 33 7999999876544333
Q ss_pred ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeCC
Q 013827 281 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD 360 (436)
Q Consensus 281 ~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 360 (436)
........+..++.-.. ..++. .+|.|..|-......... +. .....|..++-... ..++.. |
T Consensus 174 ~p~~~~~~v~~i~~G~~--hs~al--~~G~v~~wG~n~~gqlg~-----p~----~~~~~v~~i~~G~~--h~~al~--~ 236 (282)
T 3qhy_B 174 VPAEAQSGVDDVAGGIF--HSLAL--KDGKVIAWGDNRYKQTTV-----PT----EALSGVSAIASGEW--YSLALK--N 236 (282)
T ss_dssp CCGGGGSSEEEEEECSS--EEEEE--ETTEEEEEECCTTSTTCC-----CG----GGGSSCCEEEECSS--CEEEEE--T
T ss_pred CceecCCCeEEEEecCC--EEEEE--ECCeEEEEECCCCCCCCC-----Cc----ccCCCceEEEcCCC--EEEEEE--C
Confidence 22223456777776542 23444 699999997655422110 11 11234666765543 334433 9
Q ss_pred CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCC
Q 013827 361 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS 395 (436)
Q Consensus 361 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 395 (436)
|.|+.|-.....+..+ ...|..++-....
T Consensus 237 g~v~~wG~n~~gq~~v------~~~v~~iaaG~~h 265 (282)
T 3qhy_B 237 GKVIAWGSSRTAPSSV------QSGVSSIEAGPNA 265 (282)
T ss_dssp TEEEEESTTCCCCGGG------SSCEEEEEECSSC
T ss_pred CEEEEecCCCCccccC------CCCcEEEEECcCe
Confidence 9999997665432111 2246666655544
No 359
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=69.70 E-value=88 Score=30.69 Aligned_cols=238 Identities=12% Similarity=0.084 Sum_probs=0.0
Q ss_pred CCCCCcEEEEeeCCC-----cEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccce----------
Q 013827 139 DREKGNFMAVGSMEP-----AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV---------- 203 (436)
Q Consensus 139 ~s~~~~~l~~g~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------- 203 (436)
++|++++++.+-..| .|+++|+.+++.+.. +-...+
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-----------------------------~~~~~~k~~~~~~~~~ 187 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-----------------------------GFEPITNSGKLLEGKF 187 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-----------------------------CSCCBCTTCCBCCEET
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-----------------------------Cccccccccccccccc
Q ss_pred eEEEecCCCCcEEEEE----------eCCCcEEEEeCCCCeEEEEE---cccCCCeEEEEEcCCCCC----EEEEEE---
Q 013827 204 LGLAWNKEFRNILASA----------SADKQVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSPQ----ILLSGS--- 263 (436)
Q Consensus 204 ~~~~~~~~~~~~l~s~----------~~dg~v~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~----~l~s~~--- 263 (436)
..++|. ++..++++. +....|+.|.+-+......+ ......-.+...++++.. .+++.+
T Consensus 188 ~~~~W~-d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 266 (711)
T 4hvt_A 188 TYPTWI-NKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDF 266 (711)
T ss_dssp CCEEEE-ETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSS
T ss_pred ceeeEE-CCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEeccc
Q ss_pred CCCcEEEEecCCCCCccceEeeeCCeeEEEeCCCCCcEEEEEeC---------CCcEEEEeCCC-------CCCCCCCCC
Q 013827 264 FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE---------DGTIKGFDIRT-------AKSDPDSTS 327 (436)
Q Consensus 264 ~d~~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------dg~i~i~d~~~-------~~~~~~~~~ 327 (436)
....+.+.|.............+.... +.....+..++.+.+. .+.|...|+.+ .
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------- 337 (711)
T 4hvt_A 267 YNYDNYILDTKYKNLKLQKINMPSDAT-LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDK-------- 337 (711)
T ss_dssp SCEEEEEEECSSSSCEEEECCSCTTCE-EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGC--------
T ss_pred CceeEEEEcCCCCCCcceEeecCCcce-EeeeECCEEEEEECcccccccccCCCCeEEEEECCccccccccc--------
Q ss_pred CcccEEEeccCCCeEEEEecCCCCCEEEEEeCCCc--EEEEECCCCCceeEE-eeCCCCCcEEEEEEcCCCCcEEEEEeC
Q 013827 328 QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM--VKLWDLSNNQPSCIA-SRNPKAGAVFSVAFSEDSPFVLAIGGS 404 (436)
Q Consensus 328 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d~~--i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~ 404 (436)
.....+..+.....--.+...+..++++...++. +.++++.+++..... ..-...+.+......+++..++++.++
T Consensus 338 -~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss 416 (711)
T 4hvt_A 338 -TSLKILFTPTANEVFNFISTTKDRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIEN 416 (711)
T ss_dssp -TTCEEEECCCTTEEEEEEEECSSCEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEEC
T ss_pred -ccceEEECCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEec
Q ss_pred C---CcEEEEeCCCCc
Q 013827 405 K---GKLEIWDTLSDA 417 (436)
Q Consensus 405 d---g~i~iwd~~~~~ 417 (436)
. +.+..+|+. ++
T Consensus 417 ~~~P~~~~~~d~~-~~ 431 (711)
T 4hvt_A 417 SIVPPTIYLWVKT-HE 431 (711)
T ss_dssp SSSCCEEEEECTT-SC
T ss_pred CCCCCEEEEEeCC-Cc
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.48 E-value=45 Score=34.12 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=31.3
Q ss_pred cEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 013827 385 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 422 (436)
Q Consensus 385 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 422 (436)
.+.+++..++..+ +.+-+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~-lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNV-LVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTE-EEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcE-EEEEECCCEEEEEECCCCCeEeee
Confidence 5677888888874 778999999999999999988763
No 361
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=61.05 E-value=91 Score=27.77 Aligned_cols=170 Identities=5% Similarity=0.073 Sum_probs=90.0
Q ss_pred ccceeEEEec---CC---CCcEEEEE-eCCCcEEEEeCCCCeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEe
Q 013827 200 TDSVLGLAWN---KE---FRNILASA-SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD 272 (436)
Q Consensus 200 ~~~v~~~~~~---~~---~~~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd 272 (436)
...+..+++. |. +..++..+ +..+.|.|+|+.+++..+.+..+ |.|+. ...++ -+|.-.
T Consensus 151 ~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~--------~~pd~-~~~~~--i~G~~~--- 216 (381)
T 3q6k_A 151 PTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT--------FKAER-PTKFD--YGGKEY--- 216 (381)
T ss_dssp GGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG--------GSCCS-CEEEE--ETTEEE---
T ss_pred CCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC--------Ccccc-CcceE--ECCEEe---
Confidence 3457777776 22 12344444 34678999999999877665321 34442 11111 122211
Q ss_pred cCCCCCccceEeeeCCeeEEEeCCC----CCcEEEEEeCCCcEEEEe---CCCCCCCCCCCCCcccEEEeccC---CCeE
Q 013827 273 ARISTHSGFKWAVAADVESLAWDPH----AEHSFVVSLEDGTIKGFD---IRTAKSDPDSTSQQSSFTLHAHD---KAVC 342 (436)
Q Consensus 273 ~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~dg~i~i~d---~~~~~~~~~~~~~~~~~~~~~~~---~~v~ 342 (436)
.....+..++++|+ +..+.+..-....+.-.. ++.... ...+.. .+.. ..-.
T Consensus 217 -----------~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~------~~~v~~-~G~kg~~s~~~ 278 (381)
T 3q6k_A 217 -----------EFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGG------KLNPEL-LGNRGKYNDAI 278 (381)
T ss_dssp -----------EECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTC------CCCCEE-EEECCTTCCEE
T ss_pred -----------EeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcch------hhceEE-eeecCCCCCcc
Confidence 23456888999887 433444443333333332 222211 111222 2222 2334
Q ss_pred EEEec-CCCCCEEEEEeCCCcEEEEECCC-C---CceeEEeeCCCCCcEEEEEEcCCCCcEEEEEe
Q 013827 343 TISYN-PLVPNLLATGSTDKMVKLWDLSN-N---QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG 403 (436)
Q Consensus 343 ~~~~~-p~~~~~l~~~~~d~~i~iwd~~~-~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 403 (436)
.+++. .+| .++++--..+.|..|+..+ . +...+......-..+..+.+.++|. +.+...
T Consensus 279 ~~~~D~~~G-~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~-Lwv~sn 342 (381)
T 3q6k_A 279 ALAYDPKTK-VIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGG-LWFMSN 342 (381)
T ss_dssp EEEECTTTC-EEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSC-EEEEEC
T ss_pred eEEEeCCCC-eEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCe-EEEEEC
Confidence 56675 455 6777777788999999876 1 1112222333445688888888886 555554
No 362
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=57.78 E-value=24 Score=37.01 Aligned_cols=38 Identities=24% Similarity=0.483 Sum_probs=30.7
Q ss_pred ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEc
Q 013827 202 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE 240 (436)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 240 (436)
.+.+++..++ ..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~-~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLST-YNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETT-TTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCC-ccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4555666666 3699999999999999999999887753
No 363
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=56.94 E-value=42 Score=32.04 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=39.9
Q ss_pred CeEEEEecCCCCCEEEEEeCC------------CcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEE
Q 013827 340 AVCTISYNPLVPNLLATGSTD------------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAI 401 (436)
Q Consensus 340 ~v~~~~~~p~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 401 (436)
..-.|.|+|.| .+++.-..+ +.+.+.+..+++...+... .....++.++|+||++.+++.
T Consensus 477 ~PDNL~fd~~G-~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~-P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTC-CEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCC-CEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC-CCCccCcCeeECCCCCEEEEE
Confidence 34678999998 655543322 2456666667765444443 345689999999999976654
No 364
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=46.61 E-value=2.3e+02 Score=28.03 Aligned_cols=155 Identities=12% Similarity=0.071 Sum_probs=78.1
Q ss_pred cccceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcc------------cCCCeEEEEEcCCCCCEEEEEECC-
Q 013827 199 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH------------HTDKVQAVAWNHHSPQILLSGSFD- 265 (436)
Q Consensus 199 h~~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~l~s~~~d- 265 (436)
-...|.+|+++|.++..+..+...|.|...+ ..++.-..+.. ....+.+++++|..+..+..+...
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 4568999999998767777777667665544 33443333321 124589999998543444443321
Q ss_pred ----CcEEEEecCCCCCccceEee--------eCC--eeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCccc
Q 013827 266 ----RSVVMKDARISTHSGFKWAV--------AAD--VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS 331 (436)
Q Consensus 266 ----~~i~~wd~~~~~~~~~~~~~--------~~~--i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 331 (436)
....||-.......-..... .+. ...++++|..+..++++...+.| |--...... .+.+
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l--~~S~DgG~T-----W~~~ 170 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGL--WRSTDRAQT-----WSRM 170 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCE--EEESSTTSS-----CEEC
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcE--EEECCCCcC-----cccc
Confidence 12334433322211111111 111 13688888655566666655433 322221100 0111
Q ss_pred EEEe---ccCCCeEEEEecCCCCCEEEEEeCCC
Q 013827 332 FTLH---AHDKAVCTISYNPLVPNLLATGSTDK 361 (436)
Q Consensus 332 ~~~~---~~~~~v~~~~~~p~~~~~l~~~~~d~ 361 (436)
..+. .....+..+.++|..+..++.+..++
T Consensus 171 ~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 171 NQLPDSSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp TTSCCCSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred ccCcccCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 0000 11234778899987655566666655
No 365
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=45.75 E-value=1.5e+02 Score=25.68 Aligned_cols=152 Identities=9% Similarity=0.045 Sum_probs=85.8
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEeC
Q 013827 142 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 221 (436)
Q Consensus 142 ~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 221 (436)
+..+++..+.+|.|+--.+....... +.......+.. .+.+..+...... ..|+..+.
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~--------------------r~G~~~i~lke-~D~lv~~~~~~~~-d~ill~T~ 165 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNR--------------------SGGIVAVNLRD-NDELVGAVLCSAG-DDLLLVSA 165 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCC--------------------SSCEESCBCCT-TCCEEEEEEECTT-CEEEEEET
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccc--------------------cCceEEEEECC-CCEEEEEEEecCC-CEEEEEEC
Confidence 57789999999999988876433211 11111222333 3445555444443 46777888
Q ss_pred CCcEEEEeCC--CC---------eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc--------cce
Q 013827 222 DKQVKIWDVA--AG---------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS--------GFK 282 (436)
Q Consensus 222 dg~v~vwd~~--~~---------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~--------~~~ 282 (436)
.|.+..+... .- .....+. ....|.++...+.+ ..++..+..|.++.-.+..-... ...
T Consensus 166 ~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~-~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~ 243 (327)
T 3uc1_A 166 NGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREG-TYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVM 243 (327)
T ss_dssp TSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTT-CEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSC
T ss_pred CCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCC-CEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEE
Confidence 8988877765 21 1111222 34567777666555 67889999999988776432211 011
Q ss_pred Eee-eCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 283 WAV-AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 318 (436)
Q Consensus 283 ~~~-~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 318 (436)
... .+.+..+...... ..++..+.+|.+.-++...
T Consensus 244 l~~~~d~lv~~~~~~~~-~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 244 YDRRRGRLVGALIVDDD-SELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp CCTTTCSEEEEEEECTT-CEEEEEEGGGCEEEEEGGG
T ss_pred ecCCCCeEEEEEEeCCC-ccEEEEcCCCeEEEEehhh
Confidence 111 2344444433322 4566667777777776543
No 366
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=44.83 E-value=98 Score=29.35 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=42.0
Q ss_pred CCeEEEEecCCCCCEEE-EEeC-----------CCcEEEEECCCCCceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCC
Q 013827 339 KAVCTISYNPLVPNLLA-TGST-----------DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG 406 (436)
Q Consensus 339 ~~v~~~~~~p~~~~~l~-~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 406 (436)
.....|.|.++| .+.+ +=.. .+.+..++..+++...+.. ......++.++|+||++.|++..-.-|
T Consensus 476 nsPDnL~fd~~G-~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~-~P~~aEpnGiafSPD~ktLfV~vQHPG 553 (592)
T 4a9v_A 476 NSPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV-GPIGCEVTGISFSPDQKTLFVGIQHPG 553 (592)
T ss_dssp CCEEEEEECTTC-CEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEE-CCTTCEEEEEEECTTSSEEEEEEESTT
T ss_pred CCCCceEECCCC-CEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEe-CCCCccccCCEECCCCCEEEEEEeCCC
Confidence 346789999998 5555 3221 1256677777777444332 223457999999999997776654333
No 367
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=43.82 E-value=41 Score=32.86 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=30.1
Q ss_pred cceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCeEEEEEcc
Q 013827 201 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH 241 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 241 (436)
..|.++.+. + .++++-+.|+++|+|++.+++++....-
T Consensus 222 ~~Is~~~~~-~--~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFH-E--RYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEET-T--TEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccC-C--cEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 346655553 3 5999999999999999999998877654
No 368
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=43.57 E-value=2.2e+02 Score=26.95 Aligned_cols=176 Identities=14% Similarity=0.184 Sum_probs=92.9
Q ss_pred cccceeEEEecCCCCcEEEEEeCCCc----------------------------EEEEeCCCCeEEEEEccc--CCC---
Q 013827 199 HTDSVLGLAWNKEFRNILASASADKQ----------------------------VKIWDVAAGKCNLTLEHH--TDK--- 245 (436)
Q Consensus 199 h~~~v~~~~~~~~~~~~l~s~~~dg~----------------------------v~vwd~~~~~~~~~~~~~--~~~--- 245 (436)
|-..+....|.-||..-++....+|+ +.++|=.+|+.+..+.-. ...
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~ 256 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSD 256 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccc
Confidence 66678888888888778888877776 677777777766655321 111
Q ss_pred ------------eEEEEEcC-CCCCEEEEEE--CCCcEEEEecCCCCCccceEe--------------eeCCeeEEEeCC
Q 013827 246 ------------VQAVAWNH-HSPQILLSGS--FDRSVVMKDARISTHSGFKWA--------------VAADVESLAWDP 296 (436)
Q Consensus 246 ------------v~~~~~~~-~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~--------------~~~~i~~~~~~~ 296 (436)
..++++.. +.+..+++-+ .-..|..||.+..+... .+. -...+....++-
T Consensus 257 WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~-~W~~d~~~~~~~~~~gqg~h~~~vaDVDg 335 (591)
T 2zux_A 257 WGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSK-LWTLDSSKSGNEAFAGQGNHNLSIADVDG 335 (591)
T ss_dssp GTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEE-EEEEETTSTTCGGGSSCCCSCCEEECCSS
T ss_pred cccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEE-EEEecCCCCCcccccccCCCCCeeEeCCC
Confidence 22333321 1112222211 11236667765554321 111 112345555666
Q ss_pred CCCcEEEEEe----CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCC-CEEEEEeCCC----cEEEEE
Q 013827 297 HAEHSFVVSL----EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP-NLLATGSTDK----MVKLWD 367 (436)
Q Consensus 297 ~~~~~~~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~d~----~i~iwd 367 (436)
+|..-|+.|+ .||++ +|... .+|...+....|.|+.+ ..++.+.+++ -..+.|
T Consensus 336 DG~dEIv~Gs~~iD~dG~~-L~st~-----------------~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~d 397 (591)
T 2zux_A 336 DGKDEIIFGSMAVDHDGKG-MYSTG-----------------LGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRD 397 (591)
T ss_dssp SSSCEEEETTEEECTTSCE-EEECS-----------------CCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEE
T ss_pred CCCceEEEeeeEECCCCCE-eeeCC-----------------CCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEE
Confidence 6666666554 34443 44432 25777777778888753 3444444431 355678
Q ss_pred CCCCCceeEEeeC--CCCCcEEEEEEcCCC
Q 013827 368 LSNNQPSCIASRN--PKAGAVFSVAFSEDS 395 (436)
Q Consensus 368 ~~~~~~~~~~~~~--~~~~~v~~~~~~~~~ 395 (436)
.++++. ++... .+.+.-....|.|+.
T Consensus 398 A~tG~v--lw~~~~~~d~Gr~~~~Didp~~ 425 (591)
T 2zux_A 398 AATGKI--LWGVYAGKDVGRGMAADIDPRY 425 (591)
T ss_dssp TTTCCE--EEEECCSSCCCCEEEECCCTTS
T ss_pred CCCCcE--EEEcCCCCCCCceeEEecCCCC
Confidence 888873 33332 233444444455553
No 369
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=42.52 E-value=54 Score=34.32 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=29.2
Q ss_pred cEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 013827 385 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 421 (436)
Q Consensus 385 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 421 (436)
.+.+++..++..+ +.+-+.|+++|||++.+++++.+
T Consensus 239 ~~vs~~~~~~~~~-lftL~~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 239 TIISMIFLSTYNV-LVMLSLDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp CBSCCEEETTTTE-EEEEBTTCEEEEEETTTTEEEEE
T ss_pred eeEEeeccCCccE-EEEEeCCCEEEEEECCCCCeEEe
Confidence 3455666677774 77899999999999999998866
No 370
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=41.14 E-value=2.7e+02 Score=27.33 Aligned_cols=108 Identities=11% Similarity=0.012 Sum_probs=56.8
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEecCCCC--CccceEe----eeCCeeEEEeCCCCCcEEEEEeCC-------CcE
Q 013827 245 KVQAVAWNHHSPQILLSGSFDRSVVMKDARIST--HSGFKWA----VAADVESLAWDPHAEHSFVVSLED-------GTI 311 (436)
Q Consensus 245 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~d-------g~i 311 (436)
.|..|+++|..+..+.++...+.|...+-.... .+..... ....+.+++++|..+..++++... +..
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~ 103 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNMG 103 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCCc
Confidence 789999999865667777766665554322111 1100001 124588999998655555555421 123
Q ss_pred EEEeCCCCCCCCCCCCCcccEEEe-cc--------CCCeEEEEecCCCCCEEEEEeCC
Q 013827 312 KGFDIRTAKSDPDSTSQQSSFTLH-AH--------DKAVCTISYNPLVPNLLATGSTD 360 (436)
Q Consensus 312 ~i~d~~~~~~~~~~~~~~~~~~~~-~~--------~~~v~~~~~~p~~~~~l~~~~~d 360 (436)
.||.-.... +...... .. ...+..++++|..+..|+.+...
T Consensus 104 ~l~~S~DgG--------~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 104 AILRSTDRG--------ETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp EEEEESSSS--------SSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred cEEEeCCCC--------CCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 455443321 1111111 00 11246799999766777777643
No 371
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=35.96 E-value=2.3e+02 Score=25.03 Aligned_cols=118 Identities=16% Similarity=0.084 Sum_probs=66.4
Q ss_pred ccceeEEEecC--CCCcEEEEEeCCCcEEEEeCCCC-------eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 013827 200 TDSVLGLAWNK--EFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM 270 (436)
Q Consensus 200 ~~~v~~~~~~~--~~~~~l~s~~~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~ 270 (436)
...|.++...+ +...+|+.++..|.++...+..- .....+.. .+.+..+...... ..++..+.+|.+..
T Consensus 98 ~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~-~~i~l~T~~G~~ir 175 (370)
T 3l6v_A 98 GERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGD-RDVLLFASNGKTVR 175 (370)
T ss_dssp TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSC-CEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCC-ceEEEEeCCCeEEE
Confidence 34555554332 11348999999999998876432 22222332 3455555554444 56777888888887
Q ss_pred EecCCCCCcc--------ceEeeeCCeeEEEeCCC----------------------------------CCcEEEEEeCC
Q 013827 271 KDARISTHSG--------FKWAVAADVESLAWDPH----------------------------------AEHSFVVSLED 308 (436)
Q Consensus 271 wd~~~~~~~~--------~~~~~~~~i~~~~~~~~----------------------------------~~~~~~~~~~d 308 (436)
++...-.... ........|.++...+. ....+++.+..
T Consensus 176 f~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~ 255 (370)
T 3l6v_A 176 FGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATEN 255 (370)
T ss_dssp EEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-----------------------------------CEEEEEETT
T ss_pred EEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCC
Confidence 7754321111 11122344555544331 23478888999
Q ss_pred CcEEEEeCCCC
Q 013827 309 GTIKGFDIRTA 319 (436)
Q Consensus 309 g~i~i~d~~~~ 319 (436)
|..+...+...
T Consensus 256 G~gKrt~~~e~ 266 (370)
T 3l6v_A 256 GYGKRTPLAEY 266 (370)
T ss_dssp SEEEEEEGGGS
T ss_pred CCEEEEEHHHh
Confidence 99888877554
No 372
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=31.24 E-value=2e+02 Score=27.47 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=38.3
Q ss_pred ceeEEEecCCCCcEEEEEeCC------------CcEEEEeCCCCeEEEEEccc-CCCeEEEEEcCCCCCEEEE
Q 013827 202 SVLGLAWNKEFRNILASASAD------------KQVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLS 261 (436)
Q Consensus 202 ~v~~~~~~~~~~~~l~s~~~d------------g~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s 261 (436)
..=.|+|+|.|. +++.-..+ ..+.+.+..+++..+.+.+. ...++.+.|+|++ +.|++
T Consensus 477 ~PDNL~fd~~G~-LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg-~tlfv 547 (592)
T 3zwu_A 477 SPDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQ-KTLFV 547 (592)
T ss_dssp CEEEEEECTTCC-EEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTS-SEEEE
T ss_pred CCcceEECCCCC-EEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCC-CEEEE
Confidence 345688999985 55443321 24666777777766666543 4689999999998 44444
No 373
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=30.91 E-value=54 Score=32.01 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=27.8
Q ss_pred cEEEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccccc
Q 013827 385 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 424 (436)
Q Consensus 385 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 424 (436)
.|.++.+. .. .+++-+.|.++|+|++.+++++...--
T Consensus 223 ~Is~~~~~--~~-fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLFH--ER-YLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEET--TT-EEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEeccC--Cc-EEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 45555553 45 488899999999999999998766433
No 374
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=29.33 E-value=4.2e+02 Score=26.07 Aligned_cols=65 Identities=12% Similarity=0.011 Sum_probs=37.0
Q ss_pred cCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCC--CCccceE-----e----eeCCeeEEEeCCCCCcEEEEEe
Q 013827 242 HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--THSGFKW-----A----VAADVESLAWDPHAEHSFVVSL 306 (436)
Q Consensus 242 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~-----~----~~~~i~~~~~~~~~~~~~~~~~ 306 (436)
-.+.|.+|.++|.++..+.++...|.|...+=... ..+.... . ....+.+++++|..+..++++.
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~ 94 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQ 94 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEE
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEe
Confidence 45689999999988777777776666544321110 0111000 0 1245889999985444454443
No 375
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=29.01 E-value=2.7e+02 Score=23.75 Aligned_cols=194 Identities=12% Similarity=0.073 Sum_probs=106.8
Q ss_pred cEEEEEeCCCcEEEEeCCCCeE-------EE--EEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEecCCCCCc-----
Q 013827 214 NILASASADKQVKIWDVAAGKC-------NL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS----- 279 (436)
Q Consensus 214 ~~l~s~~~dg~v~vwd~~~~~~-------~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~----- 279 (436)
.++++.+.+|.|+--.+..-+. +. .++. .+.+..+...... ..++..+..|.++-.....-...
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~-~~ll~~T~~G~~~~~~~~~ip~~~r~~~ 86 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTH-DYLFMISNEGKLYLINAYEIKDSSRASK 86 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETT-CEEEEEETTSEEEEEEGGGSCC------
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCC-CEEEEEECCCeEEEEEHHHCCCCCccCC
Confidence 5788999999998876643211 11 1222 2344444444444 56777788888777665321110
Q ss_pred ------cceEeeeCCeeEEEeCCC--CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCC
Q 013827 280 ------GFKWAVAADVESLAWDPH--AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP 351 (436)
Q Consensus 280 ------~~~~~~~~~i~~~~~~~~--~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 351 (436)
.........+..+...++ ....++..+..|.++...+........ .......+.. ...+..+......
T Consensus 87 G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~--~G~~~i~L~~-~d~lv~~~~~~~~- 162 (312)
T 1suu_A 87 GQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKS--RGVIVIKLND-KDFVTSAEIVFKD- 162 (312)
T ss_dssp -CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC------CEECBCCCT-TCCEEEEEEECTT-
T ss_pred CcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCC--CcEEEEecCC-CCEEEEEEEeCCC-
Confidence 011122344555543321 235688889999999888755422110 1112223333 3455555554433
Q ss_pred CEEEEEeCCCcEEEEECCCC-------CceeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 013827 352 NLLATGSTDKMVKLWDLSNN-------QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 352 ~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
..++..+.+|.+..+....- +-.....+.. ...|.++...+++.. +++.+..|..+...+..
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~-l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPY-LLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSE-EEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCe-EEEEECCCceEEEEHHH
Confidence 67888899999888876541 1111222222 345666665555554 66788899999888754
No 376
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=28.28 E-value=2.8e+02 Score=26.28 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=39.7
Q ss_pred cceeEEEecCCCCcEEEEEeC------------CCcEEEEeCCCCeEEEEEccc-CCCeEEEEEcCCCCCEEEEE
Q 013827 201 DSVLGLAWNKEFRNILASASA------------DKQVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSG 262 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~------------dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~ 262 (436)
.....|.|.++|. +.++... ...|..++..+++....+... ...++.++|+||+..+++..
T Consensus 476 nsPDnL~fd~~G~-LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCC-EEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCC-EEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4567899999975 5542221 125777777778766655433 35789999999994444443
No 377
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=27.87 E-value=2.8e+02 Score=23.62 Aligned_cols=205 Identities=11% Similarity=0.049 Sum_probs=107.1
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCCCCcceeeecccchhhhhhcccCCCcccccccccCcccceeEEEecCCCCcEEEEEe
Q 013827 141 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 220 (436)
Q Consensus 141 ~~~~~l~~g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 220 (436)
++..++++.+.+|.|+--.+........ .........+... +.+..+...... ..++..+
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~------------------~~~g~~~~~lke~-D~l~~~~~~~~~-~~ll~~T 65 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGT------------------GGKGLSSFDLNDG-DEIVIALCVNTH-DYLFMIS 65 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCS------------------SCCCEECCCCCTT-CCEEEEEEEETT-CEEEEEE
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhcccc------------------CCCCceecccCCC-CEEEEEEEECCC-CEEEEEE
Confidence 4677899999999999887654322110 0001111122233 334444433332 3677777
Q ss_pred CCCcEEEEeCC---CCe------E---EEEEcccCCCeEEEEEcC---CCCCEEEEEECCCcEEEEecCCCCCc------
Q 013827 221 ADKQVKIWDVA---AGK------C---NLTLEHHTDKVQAVAWNH---HSPQILLSGSFDRSVVMKDARISTHS------ 279 (436)
Q Consensus 221 ~dg~v~vwd~~---~~~------~---~~~~~~~~~~v~~~~~~~---~~~~~l~s~~~d~~i~~wd~~~~~~~------ 279 (436)
..|.++-.... ... . ...+. ....|..+...+ +. ..++..+..|.++...+..-...
T Consensus 66 ~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~-~~ll~~T~~G~~kr~~l~~~~~~r~~G~~ 143 (312)
T 1suu_A 66 NEGKLYLINAYEIKDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDD-AYLLLTTASGKIARFESTDFKAVKSRGVI 143 (312)
T ss_dssp TTSEEEEEEGGGSCC-------CBGGGTSCCC-TTCCEEEEEEESCCCTT-CEEEEEETTSEEEEEEGGGGCC----CEE
T ss_pred CCCeEEEEEHHHCCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCC-CEEEEEeCCCeEEEEEHHHhhccCCCcEE
Confidence 78876665542 211 1 00122 233455553332 23 67888899999998877543211
Q ss_pred cceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEEEeC
Q 013827 280 GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 359 (436)
Q Consensus 280 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 359 (436)
.........+..+..... ...++..+.+|.+..+....-..............+.. ...|..+..-+++ ..+++.+.
T Consensus 144 ~i~L~~~d~lv~~~~~~~-~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~-~~l~~vt~ 220 (312)
T 1suu_A 144 VIKLNDKDFVTSAEIVFK-DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKEN-PYLLIVSE 220 (312)
T ss_dssp CBCCCTTCCEEEEEEECT-TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTC-SEEEEEET
T ss_pred EEecCCCCEEEEEEEeCC-CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCC-CeEEEEEC
Confidence 111122445655555432 34688888999998888765311111011111222222 3445555544444 56888899
Q ss_pred CCcEEEEECCC
Q 013827 360 DKMVKLWDLSN 370 (436)
Q Consensus 360 d~~i~iwd~~~ 370 (436)
.|..+..++..
T Consensus 221 ~G~~kr~~~~e 231 (312)
T 1suu_A 221 NGYGKRLNMSK 231 (312)
T ss_dssp TSEEEEEEGGG
T ss_pred CCceEEEEHHH
Confidence 99998887743
No 378
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=27.46 E-value=3e+02 Score=23.74 Aligned_cols=166 Identities=11% Similarity=-0.004 Sum_probs=90.0
Q ss_pred ccceeEEEecCC--CCcEEEEEeCCCcEEEEeCCCC-------eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 013827 200 TDSVLGLAWNKE--FRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM 270 (436)
Q Consensus 200 ~~~v~~~~~~~~--~~~~l~s~~~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~ 270 (436)
...|.++..-++ ...+++.++.+|.++--.+..- .....++. .+.+..+...... ..++..+..|.+..
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~-d~ill~T~~G~~~r 171 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAG-DDLLLVSANGQSIR 171 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTT-CEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCC-CEEEEEECCCeEEE
Confidence 345555543331 1358999999999998876542 22223333 3455555554444 56777888998888
Q ss_pred EecC--CCCCcc--------ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCC
Q 013827 271 KDAR--ISTHSG--------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA 340 (436)
Q Consensus 271 wd~~--~~~~~~--------~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (436)
+... .-.... ........|.++...+.+ ..++..+..|.++.-.+.................+......
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~-~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~ 250 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREG-TYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGR 250 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTT-CEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCS
T ss_pred EECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCC-CEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCe
Confidence 7766 211110 111224456666655533 47888889999988876544221100001111122221234
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 013827 341 VCTISYNPLVPNLLATGSTDKMVKLWDLS 369 (436)
Q Consensus 341 v~~~~~~p~~~~~l~~~~~d~~i~iwd~~ 369 (436)
+..+...... ..++..+.+|.+.-++..
T Consensus 251 lv~~~~~~~~-~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 251 LVGALIVDDD-SELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEEEEECTT-CEEEEEEGGGCEEEEEGG
T ss_pred EEEEEEeCCC-ccEEEEcCCCeEEEEehh
Confidence 4444433333 566667777777777654
No 379
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=23.11 E-value=3.5e+02 Score=22.99 Aligned_cols=166 Identities=14% Similarity=0.064 Sum_probs=87.2
Q ss_pred ccceeEEEec---CCCCcEEEEEeCCCcEEEEeCCC-------CeEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 013827 200 TDSVLGLAWN---KEFRNILASASADKQVKIWDVAA-------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVV 269 (436)
Q Consensus 200 ~~~v~~~~~~---~~~~~~l~s~~~dg~v~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 269 (436)
.+.|.++... .+ ..+++.++.+|.++--.+.. +.....+..+ +.+..+...... ..++..+.+|.+.
T Consensus 94 ~e~i~~~~~~~~~~~-~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~-~~i~l~T~~G~~i 170 (307)
T 1zi0_A 94 DERITAILPVTEFEE-GVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE-DEVMLFSAEGKVV 170 (307)
T ss_dssp TCCEEEEEEESCCCT-TCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT-CEEEEEETTSEEE
T ss_pred CCEEEEEEEeccCCC-CcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC-CEEEEECCCCcEE
Confidence 3456555432 23 24788999999999887642 1122223333 555555554444 5677788889888
Q ss_pred EEecCCCCCcc--------ceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCe
Q 013827 270 MKDARISTHSG--------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 341 (436)
Q Consensus 270 ~wd~~~~~~~~--------~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 341 (436)
.++...-.... ........+.++...+++ ..+++.+..|.++-.++.................+....+.+
T Consensus 171 rf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~-~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~l 249 (307)
T 1zi0_A 171 RFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGD-GAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLV 249 (307)
T ss_dssp EEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSS-CEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSE
T ss_pred EEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCC-CEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeE
Confidence 77764321110 111223456666554433 468888899999888775432110000011111222223444
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 013827 342 CTISYNPLVPNLLATGSTDKMVKLWDLSN 370 (436)
Q Consensus 342 ~~~~~~p~~~~~l~~~~~d~~i~iwd~~~ 370 (436)
..+....+. ..++..+.+|.+.-++...
T Consensus 250 v~~~~v~~~-~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 250 VGAVQVDDC-DQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEEEEECTT-CEEEEEESSCCEEEEEGGG
T ss_pred EEEEEeCCC-ceEEEEcCCCcEEEEeccc
Confidence 444433333 4455666677766555543
No 380
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=22.93 E-value=4e+02 Score=23.62 Aligned_cols=126 Identities=11% Similarity=0.182 Sum_probs=65.0
Q ss_pred CCeeEEEeC---CC---CCcEEE-EEeCCCcEEEEeCCCCCCCCCC-----CCCcccEEEecc----CCCeEEEEecCC-
Q 013827 287 ADVESLAWD---PH---AEHSFV-VSLEDGTIKGFDIRTAKSDPDS-----TSQQSSFTLHAH----DKAVCTISYNPL- 349 (436)
Q Consensus 287 ~~i~~~~~~---~~---~~~~~~-~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~~~~~~----~~~v~~~~~~p~- 349 (436)
..+..+.++ |. +..++. +=...+.|.+||+.+++..... ..........+. ...+..|+.+|+
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~ 231 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRD 231 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCC
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCc
Confidence 456777776 21 123333 3345778999999887431100 000001111111 246889999997
Q ss_pred ---CCCEEEEEeCCCcEEEEECCC-----CC---ceeEEeeCCCCCcEEEEEEc-CCCCcEEEEEeCCCcEEEEeCCC
Q 013827 350 ---VPNLLATGSTDKMVKLWDLSN-----NQ---PSCIASRNPKAGAVFSVAFS-EDSPFVLAIGGSKGKLEIWDTLS 415 (436)
Q Consensus 350 ---~~~~l~~~~~d~~i~iwd~~~-----~~---~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~ 415 (436)
+ +.|+-....+. ++|.+.+ .. ........+....-..+++. .+|. ++++--..+.|..|+..+
T Consensus 232 ~~~~-~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~-ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 232 SEGN-RPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKV-IFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp TTSC-CEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCE-EEEEESSSSEEEEEETTS
T ss_pred CCCC-eEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCe-EEEEeccCCeEEEEeCCC
Confidence 4 55555544432 3443321 11 11111112211234456775 5675 677777788999999875
No 381
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=22.00 E-value=3.5e+02 Score=22.57 Aligned_cols=207 Identities=12% Similarity=0.010 Sum_probs=108.8
Q ss_pred cceeEEEecCCCCcEEEEEeCCCcEEE---EeCCCCeEEEEEcccCCCeEEEEEcC-CCCCEEEEEECCCcEEEEecCCC
Q 013827 201 DSVLGLAWNKEFRNILASASADKQVKI---WDVAAGKCNLTLEHHTDKVQAVAWNH-HSPQILLSGSFDRSVVMKDARIS 276 (436)
Q Consensus 201 ~~v~~~~~~~~~~~~l~s~~~dg~v~v---wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~d~~i~~wd~~~~ 276 (436)
+.+..+.-.... ..|+.-+..|.++- |++........+. ....|..+.... +. ..++..+.+|.++-..+..-
T Consensus 24 D~~~~~~~~~t~-~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~-~~~v~~T~~G~iKr~~l~~~ 100 (276)
T 3no0_A 24 APVVNILRVPFT-EGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFG-NRLLLATKKGYVKKIPLAEF 100 (276)
T ss_dssp CCEEEEEEEETT-SCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSC-SEEEEEETTSEEEEEEGGGT
T ss_pred CeEEEEEEECCC-CEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCC-CEEEEEeCCCEEEEEEHHHh
Confidence 445554444432 34555666776654 3333322111133 355666664421 34 68999999999999887654
Q ss_pred C-----CccceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCC
Q 013827 277 T-----HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP 351 (436)
Q Consensus 277 ~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 351 (436)
. ...........+..+...... ..++..+..|.+..+....-..............+.. ...|..+...+++
T Consensus 101 ~~~~~G~~~i~lkegD~l~~~~~~~~~-~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~- 177 (276)
T 3no0_A 101 EYKAQGMPIIKLTEGDEVVSIASSVDE-THILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGE- 177 (276)
T ss_dssp TTCSTTEECSCCCTTCCEEEEEECCSS-CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSC-
T ss_pred hhhcCCeEEEecCCCCEEEEEEEeCCC-CEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCC-
Confidence 2 111112223456665555433 4688888899988887644321110001111122322 2445555444444
Q ss_pred CEEEEEeCCCcEEEEECCCCCc-----eeEEeeCCCCCcEEEEEEcCCCCcEEEEEeCCCcEEE--EeCCC
Q 013827 352 NLLATGSTDKMVKLWDLSNNQP-----SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI--WDTLS 415 (436)
Q Consensus 352 ~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i--wd~~~ 415 (436)
..++..+..|.++...+..-.. .-+..+ ...+.+..+........ ++..+.+|.+.. ++...
T Consensus 178 ~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~-i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 178 PYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVE-LLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp SEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEE-EEEEETTSCEEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCE-EEEEcCCCeEEEeeeCHHH
Confidence 6888889999998887643210 112222 22334554443333332 555777888877 87654
No 382
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=21.85 E-value=5.2e+02 Score=24.59 Aligned_cols=180 Identities=14% Similarity=0.178 Sum_probs=94.1
Q ss_pred CcccceeEEEecCCCCcEEEEEeCCCc----------------------------EEEEeCCCCeEEEEEcc--cCCC--
Q 013827 198 SHTDSVLGLAWNKEFRNILASASADKQ----------------------------VKIWDVAAGKCNLTLEH--HTDK-- 245 (436)
Q Consensus 198 ~h~~~v~~~~~~~~~~~~l~s~~~dg~----------------------------v~vwd~~~~~~~~~~~~--~~~~-- 245 (436)
.|-..+.-..|.-||..-++....+|+ +.++|=.+++.+..+.- ....
T Consensus 180 ahyt~~~V~DlDGDGkaEIvv~TadGt~dg~g~vigd~~~dyr~~~g~il~G~eyL~vfdG~TG~~l~t~~~~p~rg~~~ 259 (620)
T 2zuy_A 180 AHYTQFMVYDLDGDGKAEIAMKTADGTTDGKGHIIGDEQADFRNEQGRILSGPEYLTVFKGETGEALTTVEYEPPRGKLE 259 (620)
T ss_dssp TTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSCTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCSGG
T ss_pred cccCceeEEEcCCCCcceEEEEccCCcccCcceeecccccccccccceEecCCeEEEEEcCCCcceeeecccCCCcCccc
Confidence 366677888888888777888777766 47777777766655432 0111
Q ss_pred -------------eEEEEEcCC-CCCEEEEEEC--CCcEEEEecCCCCCccceEe--------------eeCCeeEEEeC
Q 013827 246 -------------VQAVAWNHH-SPQILLSGSF--DRSVVMKDARISTHSGFKWA--------------VAADVESLAWD 295 (436)
Q Consensus 246 -------------v~~~~~~~~-~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~--------------~~~~i~~~~~~ 295 (436)
..++++... .+..+++-+. -..|..||.+..+... .+. -...+....++
T Consensus 260 ~WGD~yGnR~drf~~~vayLDG~~Ps~v~~rG~Ytr~~v~A~d~~~g~L~~-~W~~ds~~~~~~~~~gqg~H~~svaDVD 338 (620)
T 2zuy_A 260 DWGDGYGNRMDRFLAGTAYLDGERPSLVMARGYYTRTVLVAYDFRNGRLKK-RWVFDSNQPGHEAYAGQGNHSLSVADVD 338 (620)
T ss_dssp GGTSSSSTTTTCEEEEEECTTCC-CEEEEEECSSSSCEEEEEEEETTEEEE-EEEEETTSTTCGGGTTCCCSSCEEECCS
T ss_pred cccccccccccccceeEEecCCCCceEEEecCcccceeEEEEEccCCceee-eeEecCCCCcccccccccCcCceEEecC
Confidence 223333221 1122222221 1335556665543211 111 11234445556
Q ss_pred CCCCcEEEEEe----CCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEEEecCCCCCEEEE-EeCC----CcEEEE
Q 013827 296 PHAEHSFVVSL----EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT-GSTD----KMVKLW 366 (436)
Q Consensus 296 ~~~~~~~~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~d----~~i~iw 366 (436)
-+|..-++.|+ .||++ +|... .+|...+..-.|.|+.+.+.+. +.++ ....+.
T Consensus 339 GDG~dEIv~Gs~~iD~dG~~-L~st~-----------------~gHGDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~ 400 (620)
T 2zuy_A 339 GDGKDEIIYGAMAVDHDGTG-LYSTG-----------------LGHGDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLR 400 (620)
T ss_dssp SSSSCEEEETTEEECTTSSE-EEECS-----------------CCCCSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEE
T ss_pred CCCceeEEEeeeEECCCCCE-EeecC-----------------CCCCceeEEEecCCCCCCCEEEEEecCCCCCCceEEE
Confidence 66666666554 33333 33321 2577777888888886555444 4333 256788
Q ss_pred ECCCCCceeEEeeCCCCCcEEEEEEcCCCC
Q 013827 367 DLSNNQPSCIASRNPKAGAVFSVAFSEDSP 396 (436)
Q Consensus 367 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 396 (436)
|.++++.........+.+....-.|.|+.+
T Consensus 401 DA~tG~vlw~~~~~~D~Gr~~~~Didp~~p 430 (620)
T 2zuy_A 401 DAGTGEILWGVHAGTDVGRGMAAHIDPSYK 430 (620)
T ss_dssp ETTTCCEEEEECCSSCCCEEEEECCCTTSS
T ss_pred ECCCCcEEEEecCcccCCceEEEecCCCCC
Confidence 999998432222223444444555666543
No 383
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=21.22 E-value=3.6e+02 Score=22.47 Aligned_cols=163 Identities=15% Similarity=0.067 Sum_probs=90.1
Q ss_pred ccceeEEEecCC-CCcEEEEEeCCCcEEEEeCCCC------eEEEEEcccCCCeEEEEEcCCCCCEEEEEECCCcEEEEe
Q 013827 200 TDSVLGLAWNKE-FRNILASASADKQVKIWDVAAG------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD 272 (436)
Q Consensus 200 ~~~v~~~~~~~~-~~~~l~s~~~dg~v~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd 272 (436)
.+.|..+.. ++ ...+++.++.+|.++-..+..- .....++ ..+.+..+...... ..++..+..|.+..++
T Consensus 67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~-~~ill~T~~G~~~r~~ 143 (276)
T 3no0_A 67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSVDE-THILLFTKKGRVARFS 143 (276)
T ss_dssp TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECCSS-CEEEEEETTSEEEEEE
T ss_pred CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeCCC-CEEEEEECCCEEEEEE
Confidence 455666543 31 2358999999999999886542 2222233 23456555555444 5788888899988877
Q ss_pred cCCCCCc--------cceEeeeCCeeEEEeCCCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccEEEeccCCCeEEE
Q 013827 273 ARISTHS--------GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI 344 (436)
Q Consensus 273 ~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 344 (436)
...-... .........+..+...+++ ..++..+..|.++...+......... ..-+..+ ...+.+..+
T Consensus 144 ~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~-~~ll~~T~~G~~kr~~~~e~~~~~R~--gkGv~~i-~~~~~lv~~ 219 (276)
T 3no0_A 144 VREVPPSTPGARGVQGIKLEKNDETSGLRIWNGE-PYLLVITAKGRVKKISHEEIPKTNRG--VKGTEVS-GTKDTLVDL 219 (276)
T ss_dssp GGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSC-SEEEEEETTSCEEEEEGGGSCCCCTT--CCCEECC-CSSSCEEEE
T ss_pred hhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCC-CEEEEEeCCCcEEEeEHHHcccCCCC--CcceEEE-cCCCcEEEE
Confidence 5432111 0111223455555544433 47888889999988887554221110 0111122 223444444
Q ss_pred EecCCCCCEEEEEeCCCcEEE--EECCC
Q 013827 345 SYNPLVPNLLATGSTDKMVKL--WDLSN 370 (436)
Q Consensus 345 ~~~p~~~~~l~~~~~d~~i~i--wd~~~ 370 (436)
...... ..++..+.+|.+.. ++...
T Consensus 220 ~~~~~~-~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 220 IPIKEE-VELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEESSE-EEEEEEETTSCEEEEEEEGGG
T ss_pred EEeCCC-CEEEEEcCCCeEEEeeeCHHH
Confidence 333322 46667777888777 76543
Done!