Query 013828
Match_columns 436
No_of_seqs 138 out of 154
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 17:52:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f62_A Transcription factor WS 99.2 4.6E-12 1.6E-16 92.1 3.4 50 3-54 1-50 (51)
2 2e6r_A Jumonji/ARID domain-con 99.1 3.1E-11 1.1E-15 98.6 3.0 52 2-55 16-67 (92)
3 2e6s_A E3 ubiquitin-protein li 99.1 7.5E-11 2.6E-15 94.1 4.7 49 4-54 28-77 (77)
4 2lri_C Autoimmune regulator; Z 99.1 6.7E-11 2.3E-15 92.0 3.7 48 3-55 13-60 (66)
5 1mm2_A MI2-beta; PHD, zinc fin 99.1 1.4E-10 4.7E-15 88.2 5.1 51 2-57 9-59 (61)
6 3shb_A E3 ubiquitin-protein li 99.0 1.1E-10 3.8E-15 93.4 4.5 49 4-54 28-77 (77)
7 3asl_A E3 ubiquitin-protein li 99.0 1.4E-10 4.9E-15 90.6 4.8 49 4-54 20-69 (70)
8 1wev_A Riken cDNA 1110020M19; 99.0 1.1E-10 3.7E-15 94.5 3.4 55 2-58 16-76 (88)
9 2ku3_A Bromodomain-containing 99.0 7.2E-11 2.5E-15 93.0 1.2 51 2-56 16-68 (71)
10 1xwh_A Autoimmune regulator; P 99.0 2.4E-10 8E-15 87.8 3.3 51 2-57 8-58 (66)
11 2yt5_A Metal-response element- 98.9 2.7E-10 9.4E-15 86.2 2.8 52 2-55 6-62 (66)
12 2ysm_A Myeloid/lymphoid or mix 98.9 4E-10 1.4E-14 92.7 4.0 54 4-59 56-109 (111)
13 2yql_A PHD finger protein 21A; 98.9 3.4E-10 1.2E-14 84.3 3.1 47 2-53 9-55 (56)
14 1fp0_A KAP-1 corepressor; PHD 98.9 9.4E-10 3.2E-14 90.6 5.8 50 2-56 25-74 (88)
15 2l43_A N-teminal domain from h 98.9 2.1E-10 7.1E-15 93.2 1.7 50 2-55 25-76 (88)
16 3v43_A Histone acetyltransfera 98.9 9.3E-10 3.2E-14 91.6 4.5 48 4-53 63-111 (112)
17 2kwj_A Zinc finger protein DPF 98.9 6.2E-10 2.1E-14 93.1 3.2 49 4-54 60-108 (114)
18 2puy_A PHD finger protein 21A; 98.9 6.8E-10 2.3E-14 83.5 3.0 49 2-55 5-53 (60)
19 2l5u_A Chromodomain-helicase-D 98.9 8.1E-10 2.8E-14 84.0 3.2 48 2-54 11-58 (61)
20 3o36_A Transcription intermedi 98.8 2.4E-09 8E-14 94.7 4.2 49 2-55 4-52 (184)
21 3u5n_A E3 ubiquitin-protein li 98.8 2.3E-09 7.7E-14 96.7 3.7 49 2-55 7-55 (207)
22 2k16_A Transcription initiatio 98.7 3E-09 1E-13 82.5 2.6 53 3-57 19-71 (75)
23 2ro1_A Transcription intermedi 98.7 8.4E-09 2.9E-13 92.8 5.4 49 3-56 3-51 (189)
24 2lv9_A Histone-lysine N-methyl 98.6 2E-08 6.9E-13 82.6 4.5 49 2-54 28-76 (98)
25 2ysm_A Myeloid/lymphoid or mix 98.4 2.2E-07 7.5E-12 76.4 4.1 50 2-53 7-56 (111)
26 4gne_A Histone-lysine N-methyl 98.2 5.2E-07 1.8E-11 76.3 3.6 50 2-58 15-66 (107)
27 1wen_A Inhibitor of growth fam 98.2 1.9E-06 6.4E-11 67.8 5.4 50 3-57 17-68 (71)
28 2vnf_A ING 4, P29ING4, inhibit 98.2 6E-07 2.1E-11 68.2 2.0 46 4-54 12-59 (60)
29 1weu_A Inhibitor of growth fam 98.1 3E-06 1E-10 70.0 4.7 51 3-58 37-89 (91)
30 3c6w_A P28ING5, inhibitor of g 98.0 1.7E-06 5.9E-11 65.7 2.0 47 3-54 10-58 (59)
31 2jmi_A Protein YNG1, ING1 homo 97.9 4E-06 1.4E-10 69.1 3.3 46 3-53 27-75 (90)
32 1we9_A PHD finger family prote 97.9 8.7E-06 3E-10 61.3 3.7 56 2-58 6-62 (64)
33 2g6q_A Inhibitor of growth pro 97.8 6.2E-06 2.1E-10 63.3 2.1 47 3-54 12-60 (62)
34 3o70_A PHD finger protein 13; 97.7 2.1E-05 7.2E-10 61.2 3.2 47 3-53 20-66 (68)
35 3v43_A Histone acetyltransfera 97.6 6.7E-06 2.3E-10 68.4 -0.0 52 2-55 5-65 (112)
36 1x4i_A Inhibitor of growth pro 97.5 1.5E-05 5.1E-10 62.5 0.4 48 5-56 8-57 (70)
37 1wew_A DNA-binding family prot 97.5 4.8E-05 1.6E-09 59.9 2.7 55 3-59 17-77 (78)
38 1wee_A PHD finger family prote 97.4 5.5E-05 1.9E-09 58.6 2.6 49 3-55 17-67 (72)
39 2kwj_A Zinc finger protein DPF 97.4 3.2E-05 1.1E-09 64.6 1.1 50 3-54 2-61 (114)
40 1wep_A PHF8; structural genomi 97.3 8.9E-05 3E-09 58.3 2.1 51 4-55 13-64 (79)
41 2ri7_A Nucleosome-remodeling f 97.3 3E-05 1E-09 67.5 -0.9 52 2-55 8-60 (174)
42 3o7a_A PHD finger protein 13 v 97.2 0.00016 5.5E-09 53.0 2.8 48 3-53 4-51 (52)
43 2xb1_A Pygopus homolog 2, B-ce 97.1 5.3E-05 1.8E-09 63.1 -0.5 55 2-58 3-65 (105)
44 1wem_A Death associated transc 97.1 6.5E-05 2.2E-09 58.5 -0.1 52 4-56 17-72 (76)
45 2lbm_A Transcriptional regulat 97.1 0.0001 3.6E-09 65.1 0.7 47 3-54 64-117 (142)
46 3kqi_A GRC5, PHD finger protei 97.0 0.00011 3.8E-09 57.4 0.3 53 3-56 10-63 (75)
47 2rsd_A E3 SUMO-protein ligase 96.8 0.00042 1.4E-08 53.3 2.0 51 4-55 11-66 (68)
48 3ql9_A Transcriptional regulat 96.6 0.00024 8.1E-09 62.1 -0.9 47 3-54 58-111 (129)
49 2kgg_A Histone demethylase jar 96.5 0.00077 2.6E-08 49.5 1.2 48 3-52 3-52 (52)
50 2vpb_A Hpygo1, pygopus homolog 96.4 0.00037 1.3E-08 54.0 -0.6 49 2-52 8-64 (65)
51 4bbq_A Lysine-specific demethy 95.8 0.0051 1.7E-07 50.5 3.0 43 11-54 69-114 (117)
52 3lqh_A Histone-lysine N-methyl 95.7 0.0028 9.5E-08 57.7 1.3 52 3-55 3-64 (183)
53 3pur_A Lysine-specific demethy 95.5 0.005 1.7E-07 64.2 2.2 51 3-54 13-94 (528)
54 3kv5_D JMJC domain-containing 95.3 0.0022 7.6E-08 65.6 -0.9 51 4-55 38-89 (488)
55 3kv4_A PHD finger protein 8; e 95.3 0.0016 5.4E-08 66.3 -2.1 54 2-56 4-58 (447)
56 1wil_A KIAA1045 protein; ring 93.8 0.013 4.4E-07 49.0 0.5 49 3-53 16-75 (89)
57 2ku7_A MLL1 PHD3-CYP33 RRM chi 89.8 0.15 5.3E-06 40.7 2.3 38 17-55 2-45 (140)
58 4bbq_A Lysine-specific demethy 76.0 0.45 1.5E-05 38.8 -0.5 38 3-56 8-45 (117)
59 4gne_A Histone-lysine N-methyl 73.8 2.7 9.2E-05 35.4 3.7 43 4-54 60-102 (107)
60 2ct0_A Non-SMC element 1 homol 73.5 1.8 6.1E-05 34.1 2.4 49 2-56 15-63 (74)
61 1weq_A PHD finger protein 7; s 72.9 4 0.00014 33.6 4.4 36 14-53 43-78 (85)
62 1weo_A Cellulose synthase, cat 65.1 2.6 9.1E-05 35.5 1.8 53 2-59 16-72 (93)
63 3nw0_A Non-structural maintena 62.7 2.3 7.8E-05 39.6 1.1 47 2-54 180-226 (238)
64 1kbe_A Kinase suppressor of RA 57.3 6.7 0.00023 28.9 2.6 32 2-36 14-45 (49)
65 1e8j_A Rubredoxin; iron-sulfur 56.9 9.5 0.00032 28.4 3.4 21 32-54 25-45 (52)
66 2yuu_A NPKC-delta, protein kin 54.5 17 0.00057 28.4 4.7 33 2-35 28-62 (83)
67 3rsn_A SET1/ASH2 histone methy 53.9 10 0.00036 34.7 3.8 45 7-53 9-58 (177)
68 2jrp_A Putative cytoplasmic pr 53.8 5.4 0.00019 32.6 1.8 41 1-56 1-42 (81)
69 1v5n_A PDI-like hypothetical p 53.5 4.6 0.00016 32.5 1.3 31 4-36 49-79 (89)
70 1vyx_A ORF K3, K3RING; zinc-bi 49.4 1.2 4.1E-05 33.4 -2.6 49 2-54 6-56 (60)
71 2kn9_A Rubredoxin; metalloprot 47.8 7.8 0.00027 31.6 1.8 35 15-55 25-70 (81)
72 1s24_A Rubredoxin 2; electron 47.6 5.8 0.0002 32.8 1.0 19 34-54 59-77 (87)
73 1dx8_A Rubredoxin; electron tr 47.4 8.1 0.00028 30.5 1.8 20 34-55 31-50 (70)
74 6rxn_A Rubredoxin; electron tr 47.2 7 0.00024 28.8 1.3 16 37-54 24-39 (46)
75 1faq_A RAF-1; transferase, ser 46.1 12 0.00042 26.3 2.4 32 2-36 14-45 (52)
76 3uej_A NPKC-delta, protein kin 44.8 9.9 0.00034 28.3 1.9 33 2-35 20-54 (65)
77 2jw6_A Deformed epidermal auto 42.8 12 0.0004 26.5 1.9 27 2-35 9-35 (52)
78 2enz_A NPKC-theta, protein kin 42.8 19 0.00063 26.9 3.1 33 2-35 23-57 (65)
79 2ect_A Ring finger protein 126 42.4 21 0.00071 26.2 3.3 57 2-64 15-71 (78)
80 2dj8_A Protein CBFA2T1; zinc f 42.3 14 0.00048 27.3 2.3 27 2-35 15-41 (60)
81 2v3b_B Rubredoxin 2, rubredoxi 41.8 9.4 0.00032 28.7 1.3 20 34-55 27-46 (55)
82 2od1_A Protein CBFA2T1; zinc f 41.4 15 0.0005 27.2 2.3 27 2-35 13-39 (60)
83 1yk4_A Rubredoxin, RD; electro 40.4 11 0.00038 28.1 1.5 19 34-54 26-44 (52)
84 2odd_A Protein CBFA2T1; MYND z 39.3 16 0.00053 27.1 2.2 27 2-35 17-43 (64)
85 4b2u_A S67; toxin, ICK; NMR {S 36.4 11 0.00039 26.6 0.9 24 30-54 2-27 (36)
86 1ptq_A Protein kinase C delta 35.3 19 0.00065 25.0 2.0 33 2-35 11-45 (50)
87 2jne_A Hypothetical protein YF 34.7 13 0.00046 31.7 1.3 40 1-55 31-71 (101)
88 2eli_A Protein kinase C alpha 33.9 35 0.0012 26.8 3.6 33 2-35 28-62 (85)
89 3a1b_A DNA (cytosine-5)-methyl 33.4 11 0.00038 34.1 0.6 49 3-55 80-135 (159)
90 2enn_A NPKC-theta, protein kin 32.6 33 0.0011 26.5 3.1 33 2-35 34-68 (77)
91 2ep4_A Ring finger protein 24; 31.6 11 0.00039 27.4 0.3 56 2-64 15-71 (74)
92 2d8s_A Cellular modulator of i 31.3 15 0.00052 28.7 1.0 53 3-59 16-72 (80)
93 2dmi_A Teashirt homolog 3; zin 30.7 54 0.0018 24.7 4.0 9 44-52 79-87 (115)
94 2lk0_A RNA-binding protein 5; 30.0 15 0.00053 24.7 0.7 13 43-55 3-15 (32)
95 2pv0_B DNA (cytosine-5)-methyl 28.6 7.2 0.00024 39.5 -1.6 48 3-54 94-148 (386)
96 2ctu_A Zinc finger protein 483 26.4 17 0.00058 24.9 0.5 32 15-53 16-47 (73)
97 2k1p_A Zinc finger RAN-binding 26.0 21 0.00073 24.2 0.9 13 43-55 4-16 (33)
98 1x4j_A Ring finger protein 38; 23.3 10 0.00035 27.9 -1.2 47 3-55 24-70 (75)
99 2yrc_A Protein transport prote 22.4 41 0.0014 25.6 1.9 44 9-59 1-47 (59)
100 1jm7_B BARD1, BRCA1-associated 22.1 80 0.0027 25.2 3.7 43 3-55 23-65 (117)
101 3pfq_A PKC-B, PKC-beta, protei 21.8 53 0.0018 33.7 3.2 32 3-35 114-147 (674)
102 1iym_A EL5; ring-H2 finger, ub 21.7 43 0.0015 22.7 1.8 47 2-54 5-52 (55)
103 2egp_A Tripartite motif-contai 21.0 56 0.0019 23.7 2.4 50 3-56 13-64 (79)
104 2ysl_A Tripartite motif-contai 20.6 38 0.0013 24.3 1.4 49 3-57 21-69 (73)
105 1pft_A TFIIB, PFTFIIBN; N-term 20.1 40 0.0014 23.8 1.4 21 4-24 7-31 (50)
No 1
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.22 E-value=4.6e-12 Score=92.11 Aligned_cols=50 Identities=34% Similarity=0.822 Sum_probs=45.8
Q ss_pred cccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCcccccccccc
Q 013828 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (436)
Q Consensus 3 tVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~ 54 (436)
+.|.+||+.|.++.|++||.|+. ++|.||+++.+..+|+ +.|||+.|...
T Consensus 1 a~C~vC~~~~~~~~ll~Cd~C~~-~~H~~Cl~p~l~~~P~-g~W~C~~C~~~ 50 (51)
T 1f62_A 1 ARCKVCRKKGEDDKLILCDECNK-AFHLFCLRPALYEVPD-GEWQCPACQPA 50 (51)
T ss_dssp CCCTTTCCSSCCSCCEECTTTCC-EECHHHHCTTCCSCCS-SCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCCEEECCCCCh-hhCcccCCCCcCCCCC-CcEECcCcccc
Confidence 47999999999999999999995 8999999998999996 89999999753
No 2
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=3.1e-11 Score=98.58 Aligned_cols=52 Identities=25% Similarity=0.609 Sum_probs=47.6
Q ss_pred CcccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCccccccccccc
Q 013828 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (436)
Q Consensus 2 vtVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~ 55 (436)
...|.+|++.+.++.|++||.|+. ++|+||+++++..+|+ +.|||+.|....
T Consensus 16 ~~~C~vC~~~~~~~~ll~CD~C~~-~~H~~Cl~Ppl~~~P~-g~W~C~~C~~~~ 67 (92)
T 2e6r_A 16 SYICQVCSRGDEDDKLLFCDGCDD-NYHIFCLLPPLPEIPR-GIWRCPKCILAE 67 (92)
T ss_dssp CCCCSSSCCSGGGGGCEECTTTCC-EECSSSSSSCCSSCCS-SCCCCHHHHHHH
T ss_pred CCCCccCCCcCCCCCEEEcCCCCc-hhccccCCCCcccCCC-CCcCCccCcCcc
Confidence 457999999999999999999996 8999999999999996 899999998754
No 3
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=7.5e-11 Score=94.14 Aligned_cols=49 Identities=33% Similarity=0.832 Sum_probs=45.1
Q ss_pred ccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCC-cccccccccc
Q 013828 4 VCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDV-LWYCEDCEPK 54 (436)
Q Consensus 4 VC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g-~W~C~eCqs~ 54 (436)
.|.+||..+.++.|++||.|+. ++|+||+++++..+|+ | .|||+.|..+
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~-~yH~~Cl~Ppl~~~P~-g~~W~C~~C~~d 77 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNV-AYHIYCLNPPLDKVPE-EEYWYCPSCKTD 77 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCC-EEETTSSSSCCSSCCC-SSCCCCTTTCCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCc-cccccccCCCccCCCC-CCCcCCcCccCc
Confidence 6899999999999999999995 8999999999999996 7 9999999753
No 4
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.06 E-value=6.7e-11 Score=92.03 Aligned_cols=48 Identities=27% Similarity=0.558 Sum_probs=42.2
Q ss_pred cccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCccccccccccc
Q 013828 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (436)
Q Consensus 3 tVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~ 55 (436)
..|.+||+.| .|++||.|+. ++|+||+++++..+|+ +.|||+.|..+.
T Consensus 13 ~~C~vC~~~~---~ll~Cd~C~~-~~H~~Cl~P~l~~~P~-g~W~C~~C~~~~ 60 (66)
T 2lri_C 13 ARCGVCGDGT---DVLRCTHCAA-AFHWRCHFPAGTSRPG-TGLRCRSCSGDV 60 (66)
T ss_dssp CCCTTTSCCT---TCEECSSSCC-EECHHHHCTTTCCCCS-SSCCCTTTTTCC
T ss_pred CCcCCCCCCC---eEEECCCCCC-ceecccCCCccCcCCC-CCEECccccCCC
Confidence 5699999865 4999999995 8999999999999996 899999998653
No 5
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.06 E-value=1.4e-10 Score=88.24 Aligned_cols=51 Identities=29% Similarity=0.741 Sum_probs=44.2
Q ss_pred CcccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCcccccccccccCC
Q 013828 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAK 57 (436)
Q Consensus 2 vtVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~~~ 57 (436)
...|.+|++.| .|++||.|.. ++|.||+++++..+|+ +.|||+.|.....+
T Consensus 9 ~~~C~vC~~~g---~ll~Cd~C~~-~fH~~Cl~ppl~~~p~-g~W~C~~C~~~~~k 59 (61)
T 1mm2_A 9 MEFCRVCKDGG---ELLCCDTCPS-SYHIHCLNPPLPEIPN-GEWLCPRCTCPALK 59 (61)
T ss_dssp CSSCTTTCCCS---SCBCCSSSCC-CBCSSSSSSCCSSCCS-SCCCCTTTTTTCCT
T ss_pred CCcCCCCCCCC---CEEEcCCCCH-HHcccccCCCcCcCCC-CccCChhhcCchhc
Confidence 45799999855 6999999996 8999999999999996 89999999876544
No 6
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.05 E-value=1.1e-10 Score=93.40 Aligned_cols=49 Identities=33% Similarity=0.844 Sum_probs=44.2
Q ss_pred ccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCc-ccccccccc
Q 013828 4 VCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVL-WYCEDCEPK 54 (436)
Q Consensus 4 VC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~-W~C~eCqs~ 54 (436)
.|.+||..+.++.|++||.|+. ++|+||+++++..+|+ +. |||+.|+.+
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~-~yH~~Cl~PpL~~~P~-g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDM-AFHIYCLDPPLSSVPS-EDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCC-EEETTTSSSCCSSCCS-SSCCCCTTTC--
T ss_pred cCCccCCCCCCcceeEeCCCCC-ccCcccCCCcccCCCC-CCceECcCcccc
Confidence 5999999999999999999996 8999999999999997 67 999999853
No 7
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.04 E-value=1.4e-10 Score=90.64 Aligned_cols=49 Identities=33% Similarity=0.852 Sum_probs=44.8
Q ss_pred ccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCC-cccccccccc
Q 013828 4 VCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDV-LWYCEDCEPK 54 (436)
Q Consensus 4 VC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g-~W~C~eCqs~ 54 (436)
.|.+||..+.++.|++||.|+. ++|+||+++++..+|+ | .|||+.|..+
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~-~yH~~Cl~Ppl~~~P~-g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDM-AFHIYCLDPPLSSVPS-EDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCC-EEEGGGSSSCCSSCCS-SSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCC-ceecccCCCCcCCCCC-CCCcCCcCccCc
Confidence 5789999999999999999995 8999999999999996 6 9999999864
No 8
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.02 E-value=1.1e-10 Score=94.54 Aligned_cols=55 Identities=20% Similarity=0.561 Sum_probs=46.1
Q ss_pred CcccccccCCCc--ccceeeccCCCCCceeeccCCCCCCC----CCCCCcccccccccccCCC
Q 013828 2 VTVCQQCGDKGF--YEALIGCEKCQTTAVHIYCLPVLPAS----FEDDVLWYCEDCEPKVAKP 58 (436)
Q Consensus 2 vtVC~ICGD~Gf--ED~LllCd~Cd~~AeHtYCL~~~l~s----VPE~g~W~C~eCqs~~~~~ 58 (436)
..+|.+|+.... .+.|++||.|+. ++|+||+++++.. +|+ +.|||..|.......
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~-~yH~~Cl~Ppl~~~~~~~p~-g~W~C~~C~~~~~~~ 76 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHN-LYHQDCHKPQVTDKEVNDPR-LVWYCARCTRQMKRM 76 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCC-EEETTTSSSCCCHHHHHCTT-CCCCCHHHHHHHCCS
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCC-eEcCccCCCcccccccCCCC-CCeeCccccchhhhh
Confidence 468999998866 478999999996 8999999998774 885 999999997765433
No 9
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.99 E-value=7.2e-11 Score=92.98 Aligned_cols=51 Identities=29% Similarity=0.601 Sum_probs=44.5
Q ss_pred CcccccccCCC--cccceeeccCCCCCceeeccCCCCCCCCCCCCcccccccccccC
Q 013828 2 VTVCQQCGDKG--FYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVA 56 (436)
Q Consensus 2 vtVC~ICGD~G--fED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~~ 56 (436)
...|.+|++.+ .++.|++||.|+. ++|+||+++. .+|+ |.|||+.|.....
T Consensus 16 ~~~C~vC~~~~s~~~~~ll~CD~C~~-~~H~~Cl~~~--~vP~-g~W~C~~C~~~~~ 68 (71)
T 2ku3_A 16 DAVCSICMDGESQNSNVILFCDMCNL-AVHQECYGVP--YIPE-GQWLCRHCLQSRA 68 (71)
T ss_dssp SCSCSSSCCCCCCSSSCEEECSSSCC-EEEHHHHTCS--SCCS-SCCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCC-ccccccCCCC--cCCC-CCcCCccCcCcCc
Confidence 46899999987 8899999999996 8999999985 5896 8999999987643
No 10
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.97 E-value=2.4e-10 Score=87.82 Aligned_cols=51 Identities=29% Similarity=0.692 Sum_probs=44.5
Q ss_pred CcccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCcccccccccccCC
Q 013828 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAK 57 (436)
Q Consensus 2 vtVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~~~ 57 (436)
...|.+|++.| .|++||.|.. ++|.+|+++++..+|+ +.|||+.|......
T Consensus 8 ~~~C~vC~~~g---~ll~CD~C~~-~fH~~Cl~ppl~~~P~-g~W~C~~C~~~~~~ 58 (66)
T 1xwh_A 8 EDECAVCRDGG---ELICCDGCPR-AFHLACLSPPLREIPS-GTWRCSSCLQATVQ 58 (66)
T ss_dssp CCSBSSSSCCS---SCEECSSCCC-EECTTTSSSCCSSCCS-SCCCCHHHHHTCCC
T ss_pred CCCCccCCCCC---CEEEcCCCCh-hhcccccCCCcCcCCC-CCeECccccCcccc
Confidence 46899999875 6999999996 8999999999999996 89999999876543
No 11
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.94 E-value=2.7e-10 Score=86.24 Aligned_cols=52 Identities=25% Similarity=0.593 Sum_probs=43.9
Q ss_pred CcccccccCC--CcccceeeccCCCCCceeeccCCCCCCC--C-CCCCccccccccccc
Q 013828 2 VTVCQQCGDK--GFYEALIGCEKCQTTAVHIYCLPVLPAS--F-EDDVLWYCEDCEPKV 55 (436)
Q Consensus 2 vtVC~ICGD~--GfED~LllCd~Cd~~AeHtYCL~~~l~s--V-PE~g~W~C~eCqs~~ 55 (436)
..+|.+||.. ..++.|++||.|+. ++|+||+++++.. + |+ +.|||..|....
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~-~~H~~C~~p~l~~~~~~p~-~~W~C~~C~~~~ 62 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQ-GYHQLCHTPHIDSSVIDSD-EKWLCRQCVFAT 62 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCC-EEETTTSSSCCCHHHHHSS-CCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCh-HHHhhhCCCcccccccCCC-CCEECCCCcCcc
Confidence 4689999987 45699999999996 8999999997766 4 64 899999998654
No 12
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.94 E-value=4e-10 Score=92.74 Aligned_cols=54 Identities=30% Similarity=0.756 Sum_probs=48.8
Q ss_pred ccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCcccccccccccCCCC
Q 013828 4 VCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKPS 59 (436)
Q Consensus 4 VC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~~~~s 59 (436)
+|.+||..+.++.|++|+.|+. ++|+||+++++..+|+ +.|||+.|..-..+++
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~-~yH~~Cl~ppl~~~P~-g~W~C~~C~~c~~g~s 109 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDK-GYHTFCLQPVMKSVPT-NGWKCKNCRICISGPS 109 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCC-EEEGGGSSSCCSSCCS-SCCCCHHHHCCSCSCC
T ss_pred cccccCccCCCCCeeECCCCCc-HHhHHhcCCccccCCC-CCcCCcCCcCcCCCCC
Confidence 6999999999999999999996 8999999999999996 8999999987765544
No 13
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=3.4e-10 Score=84.32 Aligned_cols=47 Identities=26% Similarity=0.757 Sum_probs=41.9
Q ss_pred CcccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCccccccccc
Q 013828 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEP 53 (436)
Q Consensus 2 vtVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs 53 (436)
...|.+|++.| .|++||.|.. ++|.+|+++++..+|+ +.|||+.|..
T Consensus 9 ~~~C~vC~~~g---~ll~Cd~C~~-~~H~~Cl~ppl~~~p~-g~W~C~~C~~ 55 (56)
T 2yql_A 9 EDFCSVCRKSG---QLLMCDTCSR-VYHLDCLDPPLKTIPK-GMWICPRCQD 55 (56)
T ss_dssp CCSCSSSCCSS---CCEECSSSSC-EECSSSSSSCCCSCCC-SSCCCHHHHC
T ss_pred CCCCccCCCCC---eEEEcCCCCc-ceECccCCCCcCCCCC-CceEChhhhC
Confidence 46799999875 7999999995 8999999999999996 8999999975
No 14
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.93 E-value=9.4e-10 Score=90.65 Aligned_cols=50 Identities=24% Similarity=0.615 Sum_probs=44.2
Q ss_pred CcccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCcccccccccccC
Q 013828 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVA 56 (436)
Q Consensus 2 vtVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~~ 56 (436)
...|.+||+.| .|++||.|.. ++|.||+.+++..+|+ +.|+|+.|.....
T Consensus 25 ~~~C~vC~~~g---~LL~CD~C~~-~fH~~Cl~PpL~~~P~-g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 25 ATICRVCQKPG---DLVMCNQCEF-CFHLDCHLPALQDVPG-EEWSCSLCHVLPD 74 (88)
T ss_dssp SSCCSSSCSSS---CCEECTTSSC-EECTTSSSTTCCCCCS-SSCCCCSCCCCCS
T ss_pred CCcCcCcCCCC---CEEECCCCCC-ceecccCCCCCCCCcC-CCcCCccccCCCc
Confidence 45799999987 5999999995 8999999999999996 8999999987654
No 15
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.92 E-value=2.1e-10 Score=93.19 Aligned_cols=50 Identities=28% Similarity=0.597 Sum_probs=44.1
Q ss_pred CcccccccCCC--cccceeeccCCCCCceeeccCCCCCCCCCCCCccccccccccc
Q 013828 2 VTVCQQCGDKG--FYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (436)
Q Consensus 2 vtVC~ICGD~G--fED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~ 55 (436)
..+|.+||+.+ .++.|++||.|+. ++|+||+++. .+|+ |.|||+.|....
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD~C~~-~fH~~Cl~p~--~vP~-g~W~C~~C~~~~ 76 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCDMCNL-AVHQECYGVP--YIPE-GQWLCRHCLQSR 76 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECSSSCC-CCCHHHHTCS--SCCS-SCCCCHHHHHHT
T ss_pred CCcCCcCCCCCCCCCCCEEECCCCCc-hhhcccCCCC--ccCC-CceECccccCcc
Confidence 46899999988 8899999999996 8999999985 5896 899999998654
No 16
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.89 E-value=9.3e-10 Score=91.58 Aligned_cols=48 Identities=25% Similarity=0.780 Sum_probs=43.3
Q ss_pred ccccccCCC-cccceeeccCCCCCceeeccCCCCCCCCCCCCccccccccc
Q 013828 4 VCQQCGDKG-FYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEP 53 (436)
Q Consensus 4 VC~ICGD~G-fED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs 53 (436)
+|.+||+.| +++.|++||.|+. ++|+||+++++..+|+ +.|||+.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~-~yH~~Cl~p~l~~~P~-~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDR-GFHMECCDPPLTRMPK-GMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCC-EECGGGCSSCCSSCCS-SCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCC-eeecccCCCCCCCCCC-CCeECCCCCC
Confidence 799999876 5579999999995 8999999999999996 8999999985
No 17
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.88 E-value=6.2e-10 Score=93.08 Aligned_cols=49 Identities=29% Similarity=0.642 Sum_probs=45.3
Q ss_pred ccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCcccccccccc
Q 013828 4 VCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (436)
Q Consensus 4 VC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~ 54 (436)
.|.+||..+.++.|++||.|+. ++|+||+++++..+|+ +.|||+.|...
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~-~yH~~Cl~ppl~~~P~-g~W~C~~C~~~ 108 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDR-GYHMYCLNPPVAEPPE-GSWSCHLCWEL 108 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCC-EEETTTSSSCCSSCCS-SCCCCHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCc-cccccccCCCccCCCC-CCeECccccch
Confidence 6999999999999999999995 8999999999999996 89999999754
No 18
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.88 E-value=6.8e-10 Score=83.53 Aligned_cols=49 Identities=24% Similarity=0.747 Sum_probs=43.2
Q ss_pred CcccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCccccccccccc
Q 013828 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (436)
Q Consensus 2 vtVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~ 55 (436)
...|.+||+.| .|+.||.|. .++|.+|+++++..+|. +.|||+.|....
T Consensus 5 ~~~C~vC~~~g---~ll~Cd~C~-~~fH~~Cl~ppl~~~p~-g~W~C~~C~~~~ 53 (60)
T 2puy_A 5 EDFCSVCRKSG---QLLMCDTCS-RVYHLDCLDPPLKTIPK-GMWICPRCQDQM 53 (60)
T ss_dssp CSSCTTTCCCS---SCEECSSSS-CEECGGGSSSCCSSCCC-SCCCCHHHHHHH
T ss_pred CCCCcCCCCCC---cEEEcCCCC-cCEECCcCCCCcCCCCC-CceEChhccChh
Confidence 46899999865 799999999 58999999999999996 899999997654
No 19
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.87 E-value=8.1e-10 Score=83.97 Aligned_cols=48 Identities=29% Similarity=0.716 Sum_probs=42.4
Q ss_pred CcccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCcccccccccc
Q 013828 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (436)
Q Consensus 2 vtVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~ 54 (436)
...|.+|++.| .|++||.|.. ++|.||+++++..+|+ +.|||+.|..+
T Consensus 11 ~~~C~vC~~~g---~ll~CD~C~~-~fH~~Cl~p~l~~~p~-g~W~C~~C~~~ 58 (61)
T 2l5u_A 11 QDYCEVCQQGG---EIILCDTCPR-AYHMVCLDPDMEKAPE-GKWSCPHCEKE 58 (61)
T ss_dssp CSSCTTTSCCS---SEEECSSSSC-EEEHHHHCTTCCSCCC-SSCCCTTGGGG
T ss_pred CCCCccCCCCC---cEEECCCCCh-hhhhhccCCCCCCCCC-CceECcccccc
Confidence 45799999854 7999999996 8999999998899996 89999999864
No 20
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.80 E-value=2.4e-09 Score=94.67 Aligned_cols=49 Identities=29% Similarity=0.643 Sum_probs=43.4
Q ss_pred CcccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCccccccccccc
Q 013828 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (436)
Q Consensus 2 vtVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~ 55 (436)
...|.+||+.|. |++||.|.. ++|.||+.+.+..+|+ |.|+|+.|+...
T Consensus 4 ~~~C~~C~~~g~---ll~Cd~C~~-~~H~~C~~p~l~~~p~-~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNGGE---LLCCEKCPK-VFHLSCHVPTLTNFPS-GEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCCSS---CEECSSSSC-EECTTTSSSCCSSCCS-SCCCCTTTSCSS
T ss_pred CCccccCCCCCe---eeecCCCCc-ccCccccCCCCCCCCC-CCEECccccCcc
Confidence 357999998875 999999995 8999999999999996 899999998664
No 21
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.79 E-value=2.3e-09 Score=96.71 Aligned_cols=49 Identities=31% Similarity=0.612 Sum_probs=43.3
Q ss_pred CcccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCccccccccccc
Q 013828 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (436)
Q Consensus 2 vtVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~ 55 (436)
...|.+||+.|. |++||.|.. ++|.||+++++..+|+ |.|+|+.|....
T Consensus 7 ~~~C~~C~~~g~---ll~Cd~C~~-~~H~~Cl~p~l~~~p~-~~W~C~~C~~~~ 55 (207)
T 3u5n_A 7 EDWCAVCQNGGD---LLCCEKCPK-VFHLTCHVPTLLSFPS-GDWICTFCRDIG 55 (207)
T ss_dssp CSSBTTTCCCEE---EEECSSSSC-EECTTTSSSCCSSCCS-SCCCCTTTSCSS
T ss_pred CCCCCCCCCCCc---eEEcCCCCC-ccCCccCCCCCCCCCC-CCEEeCceeCcc
Confidence 357999998874 999999995 8999999999999996 899999998654
No 22
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.74 E-value=3e-09 Score=82.48 Aligned_cols=53 Identities=28% Similarity=0.782 Sum_probs=46.1
Q ss_pred cccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCcccccccccccCC
Q 013828 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAK 57 (436)
Q Consensus 3 tVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~~~ 57 (436)
..|.+||...+.+.++.||.|+. .+|.+|+++.+..+|. +.|||+.|.....+
T Consensus 19 ~~C~~C~~~~~~~~mi~CD~C~~-wfH~~Cv~~~~~~~~~-~~w~C~~C~~~~~k 71 (75)
T 2k16_A 19 WICPGCNKPDDGSPMIGCDDCDD-WYHWPCVGIMAAPPEE-MQWFCPKCANKIKK 71 (75)
T ss_dssp ECBTTTTBCCSSCCEEECSSSSS-EEEHHHHTCSSCCCSS-SCCCCTTTHHHHCS
T ss_pred cCCCCCCCCCCCCCEEEcCCCCc-ccccccCCCCccCCCC-CCEEChhccCchhh
Confidence 46999999999889999999995 8999999998777774 89999999876544
No 23
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.73 E-value=8.4e-09 Score=92.82 Aligned_cols=49 Identities=24% Similarity=0.598 Sum_probs=43.4
Q ss_pred cccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCcccccccccccC
Q 013828 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVA 56 (436)
Q Consensus 3 tVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~~ 56 (436)
..|.+||+.|. |++||.|.. ++|.||+.+.+..+|+ |.|+|+.|.....
T Consensus 3 ~~C~~C~~~g~---ll~Cd~C~~-~~H~~Cl~p~l~~~p~-g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 3 TICRVCQKPGD---LVMCNQCEF-CFHLDCHLPALQDVPG-EEWSCSLCHVLPD 51 (189)
T ss_dssp CCBTTTCCCSS---CCCCTTTCC-BCCSTTSTTCCSSCCC-TTCCTTTTSCSCC
T ss_pred CcCccCCCCCc---eeECCCCCc-hhccccCCCCcccCCC-CCCCCcCccCCCC
Confidence 47999998874 999999995 8999999998999996 8999999987654
No 24
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.63 E-value=2e-08 Score=82.55 Aligned_cols=49 Identities=35% Similarity=0.737 Sum_probs=43.0
Q ss_pred CcccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCcccccccccc
Q 013828 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (436)
Q Consensus 2 vtVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~ 54 (436)
++.| +||..+....|+.|+.|+. .+|.+|+++.+..+|+ .|||+.|+..
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~-w~H~~C~~~~~~~~p~--~w~C~~C~~~ 76 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSV-WQHIDCMGIDRQHIPD--TYLCERCQPR 76 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCB-EEETTTTTCCTTSCCS--SBCCTTTSSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCC-cCcCcCCCCCccCCCC--CEECCCCcCC
Confidence 3556 8999999999999999996 8999999998888874 8999999754
No 25
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.37 E-value=2.2e-07 Score=76.44 Aligned_cols=50 Identities=22% Similarity=0.551 Sum_probs=44.1
Q ss_pred CcccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCccccccccc
Q 013828 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEP 53 (436)
Q Consensus 2 vtVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs 53 (436)
...|.+||+.|..+.|+.|+.|.. ++|.+|+++.+..+|. +.|+|++|..
T Consensus 7 ~~~C~~C~~~g~~~~ll~C~~C~~-~~H~~Cl~~~~~~~~~-~~W~C~~C~~ 56 (111)
T 2ysm_A 7 GANCAVCDSPGDLLDQFFCTTCGQ-HYHGMCLDIAVTPLKR-AGWQCPECKV 56 (111)
T ss_dssp CSCBTTTCCCCCTTTSEECSSSCC-EECTTTTTCCCCTTTS-TTCCCTTTCC
T ss_pred CCCCcCCCCCCCCcCCeECCCCCC-CcChHHhCCccccccc-cCccCCcCCc
Confidence 457999999999888999999996 8999999998777774 8999999973
No 26
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.24 E-value=5.2e-07 Score=76.28 Aligned_cols=50 Identities=30% Similarity=0.610 Sum_probs=41.3
Q ss_pred CcccccccCCCcccceeecc--CCCCCceeeccCCCCCCCCCCCCcccccccccccCCC
Q 013828 2 VTVCQQCGDKGFYEALIGCE--KCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKP 58 (436)
Q Consensus 2 vtVC~ICGD~GfED~LllCd--~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~~~~ 58 (436)
...|.+||+.| .|+.|| .|.. ++|.+|++ +..+|+ |.|||++|.-..=+.
T Consensus 15 ~~~C~~C~~~G---~ll~CD~~~Cp~-~fH~~Cl~--L~~~P~-g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 15 EDYCFQCGDGG---ELVMCDKKDCPK-AYHLLCLN--LTQPPY-GKWECPWHQCDECSS 66 (107)
T ss_dssp CSSCTTTCCCS---EEEECCSTTCCC-EECTGGGT--CSSCCS-SCCCCGGGBCTTTCS
T ss_pred CCCCCcCCCCC---cEeEECCCCCCc-ccccccCc--CCcCCC-CCEECCCCCCCcCCC
Confidence 45799999766 499999 8996 89999999 578996 999999998654333
No 27
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.18 E-value=1.9e-06 Score=67.75 Aligned_cols=50 Identities=24% Similarity=0.758 Sum_probs=40.0
Q ss_pred cccccccCCCcccceeeccC--CCCCceeeccCCCCCCCCCCCCcccccccccccCC
Q 013828 3 TVCQQCGDKGFYEALIGCEK--CQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAK 57 (436)
Q Consensus 3 tVC~ICGD~GfED~LllCd~--Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~~~ 57 (436)
+.| +|+...+ ..|+.||+ |....+|..|+++ ..+|. +.|||+.|.....+
T Consensus 17 ~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvgl--~~~p~-g~w~Cp~C~~~~~k 68 (71)
T 1wen_A 17 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVGL--TTKPR-GKWFCPRCSQESGP 68 (71)
T ss_dssp CCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTTC--SSCCS-SCCCCTTTSSCSSS
T ss_pred CEE-ECCCCCC-CCEeEeeCCCCCCccEecccCCc--CcCCC-CCEECCCCCccccc
Confidence 456 8999876 46999999 7644799999996 67885 89999999876543
No 28
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.15 E-value=6e-07 Score=68.19 Aligned_cols=46 Identities=24% Similarity=0.813 Sum_probs=37.0
Q ss_pred ccccccCCCcccceeeccC--CCCCceeeccCCCCCCCCCCCCcccccccccc
Q 013828 4 VCQQCGDKGFYEALIGCEK--CQTTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (436)
Q Consensus 4 VC~ICGD~GfED~LllCd~--Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~ 54 (436)
.| +|+...+ ..|+.||+ |....+|.+|+++ ..+|. +.|||+.|...
T Consensus 12 ~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvgl--~~~p~-g~w~C~~C~~~ 59 (60)
T 2vnf_A 12 YC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVGL--TTKPR-GKWFCPRCSQE 59 (60)
T ss_dssp ET-TTTEECC-SEEEECSCTTCSSCEEETGGGTC--SSCCS-SCCCCHHHHC-
T ss_pred EE-ECCCcCC-CCEEEeCCCCCCCceEehhcCCC--CcCCC-CCEECcCccCc
Confidence 45 9999876 46999999 5434799999995 68885 89999999754
No 29
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.07 E-value=3e-06 Score=69.99 Aligned_cols=51 Identities=24% Similarity=0.725 Sum_probs=40.2
Q ss_pred cccccccCCCcccceeeccC--CCCCceeeccCCCCCCCCCCCCcccccccccccCCC
Q 013828 3 TVCQQCGDKGFYEALIGCEK--CQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKP 58 (436)
Q Consensus 3 tVC~ICGD~GfED~LllCd~--Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~~~~ 58 (436)
+.| +|+...+. .|+.||+ |....+|..|+++ ..+|. +.|||+.|.....+.
T Consensus 37 ~yC-iC~~~~~g-~MI~CD~~dC~~~WfH~~CVgl--~~~p~-g~W~Cp~C~~~~~k~ 89 (91)
T 1weu_A 37 TYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVGL--TTKPR-GKWFCPRCSQESGPS 89 (91)
T ss_dssp BCS-TTCCBCCS-CCCCCSCSSCSCCCCCSTTTTC--SSCCC-SSCCCTTTCCCCSSS
T ss_pred cEE-ECCCCCCC-CEeEecCCCCCCCCEecccCCc--CcCCC-CCEECcCccCcCCcC
Confidence 456 99998774 6999999 6544799999996 57774 899999998765443
No 30
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.01 E-value=1.7e-06 Score=65.69 Aligned_cols=47 Identities=26% Similarity=0.786 Sum_probs=37.8
Q ss_pred cccccccCCCcccceeeccC--CCCCceeeccCCCCCCCCCCCCcccccccccc
Q 013828 3 TVCQQCGDKGFYEALIGCEK--CQTTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (436)
Q Consensus 3 tVC~ICGD~GfED~LllCd~--Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~ 54 (436)
+.| +|++..+. .|+.||+ |....+|..|+++ ...|. +.|||+.|...
T Consensus 10 ~yC-~C~~~~~g-~mi~CD~~~C~~~wfH~~Cvgl--~~~p~-~~w~Cp~C~~~ 58 (59)
T 3c6w_A 10 TYC-LCHQVSYG-EMIGCDNPDCPIEWFHFACVDL--TTKPK-GKWFCPRCVQE 58 (59)
T ss_dssp EET-TTTEECCS-EEEECSCTTCSSCEEETGGGTC--SSCCS-SCCCCHHHHCC
T ss_pred cEE-ECCCCCCC-CeeEeeCCCCCCCCEecccCCc--ccCCC-CCEECcCccCc
Confidence 345 99997764 5999999 6634799999996 57785 89999999754
No 31
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=97.95 E-value=4e-06 Score=69.11 Aligned_cols=46 Identities=20% Similarity=0.625 Sum_probs=36.9
Q ss_pred cccccccCCCcccceeeccCCC--CCceeeccCCCCCCCCCCCCcccccc-ccc
Q 013828 3 TVCQQCGDKGFYEALIGCEKCQ--TTAVHIYCLPVLPASFEDDVLWYCED-CEP 53 (436)
Q Consensus 3 tVC~ICGD~GfED~LllCd~Cd--~~AeHtYCL~~~l~sVPE~g~W~C~e-Cqs 53 (436)
+.| +|+...+. .|+.||+|+ ...+|..|+++ ..+|. +.|||+. |..
T Consensus 27 ~yC-iC~~~~~g-~MI~CD~c~C~~eWfH~~CVgl--~~~p~-~~W~Cp~cC~~ 75 (90)
T 2jmi_A 27 VYC-FCRNVSYG-PMVACDNPACPFEWFHYGCVGL--KQAPK-GKWYCSKDCKE 75 (90)
T ss_dssp CCS-TTTCCCSS-SEECCCSSSCSCSCEETTTSSC--SSCTT-SCCCSSHHHHH
T ss_pred cEE-EeCCCCCC-CEEEecCCCCccccCcCccCCC--CcCCC-CCccCChhhcc
Confidence 346 99987776 499999976 23799999996 57775 8999999 973
No 32
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.87 E-value=8.7e-06 Score=61.29 Aligned_cols=56 Identities=27% Similarity=0.521 Sum_probs=44.9
Q ss_pred CcccccccCCCc-ccceeeccCCCCCceeeccCCCCCCCCCCCCcccccccccccCCC
Q 013828 2 VTVCQQCGDKGF-YEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKP 58 (436)
Q Consensus 2 vtVC~ICGD~Gf-ED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~~~~ 58 (436)
.+.|.+|+...+ ...++.|+.|.. -+|..|+++....++....|+|+.|....++.
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd~C~~-WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~~ 62 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCDLCEM-WFHGKCVKITPARAEHIKQYKCPSCSNKSGPS 62 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECSSSCC-EEETTTTTCCTTGGGGCSSCCCHHHHTTTCSS
T ss_pred CCCCCCCCCccCCCCCEEEccCCCC-CCCccccCcChhHhcCCCcEECCCCcCcCCCC
Confidence 467999998864 578999999995 89999999975555434799999999876554
No 33
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.82 E-value=6.2e-06 Score=63.28 Aligned_cols=47 Identities=28% Similarity=0.810 Sum_probs=37.3
Q ss_pred cccccccCCCcccceeeccC--CCCCceeeccCCCCCCCCCCCCcccccccccc
Q 013828 3 TVCQQCGDKGFYEALIGCEK--CQTTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (436)
Q Consensus 3 tVC~ICGD~GfED~LllCd~--Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~ 54 (436)
+.| +|++..+. .|+.||+ |....+|..|+++ ...|. +.|||+.|...
T Consensus 12 ~yC-~C~~~~~g-~MI~CD~c~C~~~WfH~~Cvgl--~~~p~-~~w~Cp~C~~~ 60 (62)
T 2g6q_A 12 TYC-LCNQVSYG-EMIGCDNEQCPIEWFHFSCVSL--TYKPK-GKWYCPKCRGD 60 (62)
T ss_dssp EET-TTTEECCS-EEEECSCTTCSSCEEETGGGTC--SSCCS-SCCCCHHHHTC
T ss_pred cEE-ECCCCCCC-CeeeeeCCCCCcccEecccCCc--CcCCC-CCEECcCcccC
Confidence 345 99997765 5999999 5434899999997 46774 89999999754
No 34
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.68 E-value=2.1e-05 Score=61.23 Aligned_cols=47 Identities=21% Similarity=0.611 Sum_probs=40.5
Q ss_pred cccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCccccccccc
Q 013828 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEP 53 (436)
Q Consensus 3 tVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs 53 (436)
+.| +||...+.+.++.|+.|+. -+|..|+++....+| ..|+|+.|..
T Consensus 20 ~~C-iC~~~~~~~~MIqCd~C~~-WfH~~Cvgi~~~~~~--~~~~C~~C~~ 66 (68)
T 3o70_A 20 VTC-FCMKPFAGRPMIECNECHT-WIHLSCAKIRKSNVP--EVFVCQKCRD 66 (68)
T ss_dssp CCS-TTCCCCTTCCEEECTTTCC-EEETTTTTCCTTSCC--SSCCCHHHHT
T ss_pred eEe-ECCCcCCCCCEEECCCCCc-cccccccCcCcccCC--CcEECCCCCC
Confidence 456 9999988889999999986 899999999766665 5999999974
No 35
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.65 E-value=6.7e-06 Score=68.37 Aligned_cols=52 Identities=25% Similarity=0.616 Sum_probs=41.4
Q ss_pred CcccccccCC------CcccceeeccCCCCCceeeccCCCC---CCCCCCCCccccccccccc
Q 013828 2 VTVCQQCGDK------GFYEALIGCEKCQTTAVHIYCLPVL---PASFEDDVLWYCEDCEPKV 55 (436)
Q Consensus 2 vtVC~ICGD~------GfED~LllCd~Cd~~AeHtYCL~~~---l~sVPE~g~W~C~eCqs~~ 55 (436)
..+|.+|... |..+.|+.|+.|.. ++|.+|++.. ...++. +.|+|++|+.=.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~-~~H~~Cl~~~~~~~~~~~~-~~W~C~~C~~C~ 65 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGN-SGHPSCLKFSPELTVRVKA-LRWQCIECKTCS 65 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCC-EECHHHHTCCHHHHHHHHT-SCCCCTTTCCBT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCC-CCCCchhcCCHHHHHHhhc-cccccccCCccc
Confidence 4689999876 57789999999996 8999999863 235664 899999997443
No 36
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.52 E-value=1.5e-05 Score=62.46 Aligned_cols=48 Identities=19% Similarity=0.583 Sum_probs=38.2
Q ss_pred cccccCCCcccceeeccCCC--CCceeeccCCCCCCCCCCCCcccccccccccC
Q 013828 5 CQQCGDKGFYEALIGCEKCQ--TTAVHIYCLPVLPASFEDDVLWYCEDCEPKVA 56 (436)
Q Consensus 5 C~ICGD~GfED~LllCd~Cd--~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~~ 56 (436)
-++|+...+. .++.||+|+ ...+|..|+++ ...| .+.|||+.|.....
T Consensus 8 yC~C~~~~~g-~MI~CD~cdC~~~WfH~~Cvgl--~~~p-~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 8 YCICNQVSYG-EMVGCDNQDCPIEWFHYGCVGL--TEAP-KGKWYCPQCTAAMK 57 (70)
T ss_dssp CSTTSCCCCS-SEECCSCTTCSCCCEEHHHHTC--SSCC-SSCCCCHHHHHHHH
T ss_pred EEEcCCCCCC-CEeEeCCCCCCccCCccccccc--CcCC-CCCEECCCCCcccc
Confidence 3469988766 799999986 45799999997 4567 48999999976553
No 37
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.47 E-value=4.8e-05 Score=59.94 Aligned_cols=55 Identities=25% Similarity=0.571 Sum_probs=42.3
Q ss_pred cccccccCCCcccceeecc--CCCCCceeeccCCCCCCCC----CCCCcccccccccccCCCC
Q 013828 3 TVCQQCGDKGFYEALIGCE--KCQTTAVHIYCLPVLPASF----EDDVLWYCEDCEPKVAKPS 59 (436)
Q Consensus 3 tVC~ICGD~GfED~LllCd--~Cd~~AeHtYCL~~~l~sV----PE~g~W~C~eCqs~~~~~s 59 (436)
+.| +||.......++.|+ .|.. -+|.-|+++..... ..+..|||+.|.......+
T Consensus 17 ~~C-iC~~~~~~g~MI~CD~~~C~~-W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~~s 77 (78)
T 1wew_A 17 VRC-VCGNSLETDSMIQCEDPRCHV-WQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPSS 77 (78)
T ss_dssp CCC-SSCCCCCCSCEEECSSTTTCC-EEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSCCC
T ss_pred EEe-ECCCcCCCCCEEEECCccCCc-cccCEEEccccccccccccCCCCEECCCCCcccCCCC
Confidence 456 899997777999999 9997 89999999854321 1236999999987765443
No 38
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.44 E-value=5.5e-05 Score=58.55 Aligned_cols=49 Identities=24% Similarity=0.568 Sum_probs=38.7
Q ss_pred cccccccCCCc-ccceeeccCCCCCceeeccCCCCCC-CCCCCCccccccccccc
Q 013828 3 TVCQQCGDKGF-YEALIGCEKCQTTAVHIYCLPVLPA-SFEDDVLWYCEDCEPKV 55 (436)
Q Consensus 3 tVC~ICGD~Gf-ED~LllCd~Cd~~AeHtYCL~~~l~-sVPE~g~W~C~eCqs~~ 55 (436)
+.| +||...+ .+.++.|+.|+. -+|..|+++... .+ +..|+|+.|....
T Consensus 17 ~~C-~C~~~~~~g~~mI~Cd~C~~-W~H~~Cvg~~~~~~~--~~~~~C~~C~~~~ 67 (72)
T 1wee_A 17 VDC-KCGTKDDDGERMLACDGCGV-WHHTRCIGINNADAL--PSKFLCFRCIELS 67 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCE-EEETTTTTCCTTSCC--CSCCCCHHHHHHC
T ss_pred eEe-eCCCccCCCCcEEECCCCCC-ccCCeeeccCccccC--CCcEECCCccCCC
Confidence 457 7999864 458999999985 799999998643 34 3699999998653
No 39
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.42 E-value=3.2e-05 Score=64.60 Aligned_cols=50 Identities=24% Similarity=0.588 Sum_probs=39.7
Q ss_pred cccccccCCC-------cccceeeccCCCCCceeeccCCCCCC---CCCCCCcccccccccc
Q 013828 3 TVCQQCGDKG-------FYEALIGCEKCQTTAVHIYCLPVLPA---SFEDDVLWYCEDCEPK 54 (436)
Q Consensus 3 tVC~ICGD~G-------fED~LllCd~Cd~~AeHtYCL~~~l~---sVPE~g~W~C~eCqs~ 54 (436)
..|.+|...+ ..+.|+.|+.|.. ++|.+|+++.+. .+|. +.|+|++|..-
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~-~~H~~Cl~~~~~~~~~~~~-~~W~C~~C~~C 61 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGR-SGHPTCLQFTLNMTEAVKT-YKWQCIECKSC 61 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCC-EECTTTTTCCHHHHHHHHH-TTCCCGGGCCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCC-ccchhhCCChhhhhhccCC-CccCccccCcc
Confidence 5799997654 4679999999996 899999998532 4664 79999999643
No 40
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.28 E-value=8.9e-05 Score=58.32 Aligned_cols=51 Identities=25% Similarity=0.423 Sum_probs=40.0
Q ss_pred ccccccCCCc-ccceeeccCCCCCceeeccCCCCCCCCCCCCccccccccccc
Q 013828 4 VCQQCGDKGF-YEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (436)
Q Consensus 4 VC~ICGD~Gf-ED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~ 55 (436)
+.++|+...+ ...++.|+.|+. -+|..|+++....+.....|+|+.|....
T Consensus 13 ~~C~C~~~~d~~~~MIqCd~C~~-WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYCLCRQPYNVNHFMIECGLCQD-WFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCSTTSCSCCSSSCEEEBTTTCC-EEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEEEcCCccCCCCceEEcCCCCC-cEEeeecCcccccccCCCeEECCCccccc
Confidence 3449999875 678999999995 89999999864444324699999998654
No 41
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.26 E-value=3e-05 Score=67.49 Aligned_cols=52 Identities=25% Similarity=0.505 Sum_probs=40.5
Q ss_pred CcccccccCCCc-ccceeeccCCCCCceeeccCCCCCCCCCCCCccccccccccc
Q 013828 2 VTVCQQCGDKGF-YEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (436)
Q Consensus 2 vtVC~ICGD~Gf-ED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~ 55 (436)
...| +||..++ ...++.||.|.. -+|..|+++........+.|+|+.|....
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd~C~~-WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCDRCQN-WYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCC-EEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CcEe-eCCCCCCCCCCEeECCCCCc-hhChhhcCCchhhccCccCeecCCCcchh
Confidence 3568 9999865 567999999995 89999999854333334799999998764
No 42
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.23 E-value=0.00016 Score=53.02 Aligned_cols=48 Identities=21% Similarity=0.513 Sum_probs=40.2
Q ss_pred cccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCccccccccc
Q 013828 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEP 53 (436)
Q Consensus 3 tVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs 53 (436)
++=.+||...+...++.|+.|+. -+|.-|+++....+| ..|+|+.|..
T Consensus 4 ~~~C~C~~~~~~~~MI~Cd~C~~-W~H~~Cvgi~~~~~~--~~~~C~~C~~ 51 (52)
T 3o7a_A 4 LVTCFCMKPFAGRPMIECNECHT-WIHLSCAKIRKSNVP--EVFVCQKCRD 51 (52)
T ss_dssp CBCSTTCCBCTTCCEEECTTTCC-EEETTTTTCCGGGCC--SSCCCHHHHT
T ss_pred CeEEEeCCcCCCCCEEEcCCCCc-cccccccCCCcccCC--CcEECcCCCC
Confidence 44568999888789999999985 899999999765565 5999999964
No 43
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.15 E-value=5.3e-05 Score=63.11 Aligned_cols=55 Identities=24% Similarity=0.466 Sum_probs=41.2
Q ss_pred CcccccccCCCc-ccceeecc-CCCCCceeeccCCCCCCC------CCCCCcccccccccccCCC
Q 013828 2 VTVCQQCGDKGF-YEALIGCE-KCQTTAVHIYCLPVLPAS------FEDDVLWYCEDCEPKVAKP 58 (436)
Q Consensus 2 vtVC~ICGD~Gf-ED~LllCd-~Cd~~AeHtYCL~~~l~s------VPE~g~W~C~eCqs~~~~~ 58 (436)
+.+|.+|+..-+ .+.++.|+ .|+. -+|.-|.++.... -|. +.|+|+.|.......
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~-WfH~~CVglt~~~~~~i~~~~~-~~~~Cp~C~~~~~~~ 65 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQK-WFHRECTGMTESAYGLLTTEAS-AVWACDLCLKTKEGS 65 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCC-EEEGGGTTCCHHHHHHHHHCTT-EEECCHHHHHTTTTC
T ss_pred cCCCCCCCCccCCCCCEEEecCCccc-ccccccCCcCHHHHHhhccCCC-CCEECccccCcCCCC
Confidence 568999999843 34688898 9985 8999999984211 143 799999999765443
No 44
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.13 E-value=6.5e-05 Score=58.46 Aligned_cols=52 Identities=17% Similarity=0.378 Sum_probs=39.9
Q ss_pred ccccccCCCcccceeeccCCCCCceeeccCCCCCCCC----CCCCcccccccccccC
Q 013828 4 VCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASF----EDDVLWYCEDCEPKVA 56 (436)
Q Consensus 4 VC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sV----PE~g~W~C~eCqs~~~ 56 (436)
+-++||...+.+.++.|+.|+. -+|..|+++..... +.+..|+|+.|.....
T Consensus 17 ~~C~C~~~~~~~~MI~Cd~C~~-WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 17 LYCICRQPHNNRFMICCDRCEE-WFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCSTTCCCCCSSCEEECSSSCC-EEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CEEECCCccCCCCEEEeCCCCC-cEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 3349999988889999999995 89999999853221 0136999999986643
No 45
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=97.08 E-value=0.0001 Score=65.14 Aligned_cols=47 Identities=32% Similarity=0.743 Sum_probs=38.7
Q ss_pred cccccccCCCcccceeeccCCCCCceeeccCCCCCC-----C--CCCCCcccccccccc
Q 013828 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPA-----S--FEDDVLWYCEDCEPK 54 (436)
Q Consensus 3 tVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~-----s--VPE~g~W~C~eCqs~ 54 (436)
-.|.+||+.|. |+.||.|-. ++|..|+.+++. + .|+ +.|+|+-|...
T Consensus 64 d~C~vC~~GG~---LlcCD~Cpr-~Fh~~Cl~p~l~~~~l~~i~~p~-~~W~C~~C~~~ 117 (142)
T 2lbm_A 64 EQCRWCAEGGN---LICCDFCHN-AFCKKCILRNLGRKELSTIMDEN-NQWYCYICHPE 117 (142)
T ss_dssp CSCSSSCCCSS---EEECSSSCC-EEEHHHHHHHTCHHHHHHHHTST-TCCCCTTTCCC
T ss_pred CeecccCCCCc---EEeCCCCCC-eeeHhhcCCCCChhhhhhcccCC-CCCEeecccCc
Confidence 46999999984 999999985 899999998664 2 364 89999999743
No 46
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.02 E-value=0.00011 Score=57.37 Aligned_cols=53 Identities=23% Similarity=0.377 Sum_probs=42.0
Q ss_pred cccccccCCCc-ccceeeccCCCCCceeeccCCCCCCCCCCCCcccccccccccC
Q 013828 3 TVCQQCGDKGF-YEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVA 56 (436)
Q Consensus 3 tVC~ICGD~Gf-ED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~~ 56 (436)
.+-++||...+ ...++.|+.|+. -+|.-|+++....++....|+|+.|.....
T Consensus 10 ~~yCiC~~~~~~~~~MI~Cd~C~~-WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~ 63 (75)
T 3kqi_A 10 PVYCVCRLPYDVTRFMIECDACKD-WFHGSCVGVEEEEAPDIDIYHCPNCEKTHG 63 (75)
T ss_dssp CEETTTTEECCTTSCEEECTTTCC-EEEHHHHTCCTTTGGGBSSCCCHHHHHHHC
T ss_pred eeEEECCCcCCCCCCEEEcCCCCC-CEecccccccccccCCCCEEECCCCcccCC
Confidence 45669998765 568999999995 899999999755555446899999986643
No 47
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=96.83 E-value=0.00042 Score=53.30 Aligned_cols=51 Identities=27% Similarity=0.558 Sum_probs=37.4
Q ss_pred ccccccCCCcccceeeccC--CCCCceeeccCCCCCCC---CCCCCccccccccccc
Q 013828 4 VCQQCGDKGFYEALIGCEK--CQTTAVHIYCLPVLPAS---FEDDVLWYCEDCEPKV 55 (436)
Q Consensus 4 VC~ICGD~GfED~LllCd~--Cd~~AeHtYCL~~~l~s---VPE~g~W~C~eCqs~~ 55 (436)
+-++||.......++.|+. |+. -+|..|+++.... ...+..|||+.|+..+
T Consensus 11 v~C~C~~~~~~g~mI~CD~~~C~~-W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~r 66 (68)
T 2rsd_A 11 VRCICSSTMVNDSMIQCEDQRCQV-WQHLNCVLIPDKPGESAEVPPVFYCELCRLSR 66 (68)
T ss_dssp ECCTTCCCSCCSCEEECSCTTTCE-EEETTTSCCCSSTTSCCCCCSSCCCHHHHHHH
T ss_pred EEeECCCCcCCCCEEEECCCCCCC-eEchhhCCCCcccccccCCCCcEECcCccCcc
Confidence 3348999888889999994 995 8999999974221 1112479999998543
No 48
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=96.60 E-value=0.00024 Score=62.08 Aligned_cols=47 Identities=32% Similarity=0.786 Sum_probs=38.1
Q ss_pred cccccccCCCcccceeeccCCCCCceeeccCCCC-----CCCC--CCCCcccccccccc
Q 013828 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVL-----PASF--EDDVLWYCEDCEPK 54 (436)
Q Consensus 3 tVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~-----l~sV--PE~g~W~C~eCqs~ 54 (436)
..|.+||+.|. |+.||.|- +++|..|+.+. +.++ | .+.|+|.-|...
T Consensus 58 ~~C~vC~dGG~---LlcCd~Cp-r~Fc~~Cl~~~lg~~~l~~i~~~-~~~W~C~~C~~~ 111 (129)
T 3ql9_A 58 EQCRWCAEGGN---LICCDFCH-NAFCKKCILRNLGRRELSTIMDE-NNQWYCYICHPE 111 (129)
T ss_dssp SSCTTTCCCSE---EEECSSSS-CEEEHHHHHHHTCHHHHHHHTCT-TSCCCCTTTCCG
T ss_pred CcCeecCCCCe---eEecCCCc-hhhhHHHhCCCcchhHHHHhccC-CCCeEcCCcCCH
Confidence 46999999875 89999998 59999999975 2344 5 489999999754
No 49
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=96.47 E-value=0.00077 Score=49.48 Aligned_cols=48 Identities=23% Similarity=0.504 Sum_probs=37.1
Q ss_pred cccccccCCCc-ccceeecc-CCCCCceeeccCCCCCCCCCCCCcccccccc
Q 013828 3 TVCQQCGDKGF-YEALIGCE-KCQTTAVHIYCLPVLPASFEDDVLWYCEDCE 52 (436)
Q Consensus 3 tVC~ICGD~Gf-ED~LllCd-~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCq 52 (436)
-.|.+|+...+ .+.++.|| .|+. =+|..|+++...... +..|+|+.|.
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~-WfH~~Cvgl~~~~~~-~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDE-WFHQVCVGVSPEMAE-NEDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCC-EEETTTTTCCHHHHH-HSCCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCc-cCcccccCCCccccC-CCCEECCCCC
Confidence 36899999875 56789999 8995 799999998533322 2789999994
No 50
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=96.45 E-value=0.00037 Score=53.96 Aligned_cols=49 Identities=27% Similarity=0.563 Sum_probs=38.4
Q ss_pred CcccccccCCC-cccceeecc-CCCCCceeeccCCCCCCC------CCCCCcccccccc
Q 013828 2 VTVCQQCGDKG-FYEALIGCE-KCQTTAVHIYCLPVLPAS------FEDDVLWYCEDCE 52 (436)
Q Consensus 2 vtVC~ICGD~G-fED~LllCd-~Cd~~AeHtYCL~~~l~s------VPE~g~W~C~eCq 52 (436)
..+|.+|+..- ..+.++.|| .|+. -+|.-|.++.... -|. +.|+|+.|.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~-WfH~~Cvglt~~~~~~l~~e~~-~~w~C~~C~ 64 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQK-WFHRICTGMTETAYGLLTAEAS-AVWGCDTCM 64 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCC-EEEHHHHTCCHHHHHHHHHCTT-EEECCHHHH
T ss_pred cCcCccCCCccCCCCCeEecccCccc-cCchhccCCCHHHHHHhhccCC-CcEECcCcc
Confidence 46899999975 456889999 9996 7999999985322 143 699999996
No 51
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=95.77 E-value=0.0051 Score=50.46 Aligned_cols=43 Identities=26% Similarity=0.577 Sum_probs=32.0
Q ss_pred CCcccceeeccCCCCCceeeccCCCCCCCCCC---CCcccccccccc
Q 013828 11 KGFYEALIGCEKCQTTAVHIYCLPVLPASFED---DVLWYCEDCEPK 54 (436)
Q Consensus 11 ~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE---~g~W~C~eCqs~ 54 (436)
..+++.|+.|+.|+. .+|..|++++...+++ +..|+|+.|..+
T Consensus 69 ~~~~~~m~~C~~C~~-~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 69 QDFEKKLMECCICNE-IVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp CCGGGSCEEETTTCC-EECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred cccCcceEEeeecCC-eEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 455778999999996 8999999986544432 135999999865
No 52
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=95.71 E-value=0.0028 Score=57.66 Aligned_cols=52 Identities=21% Similarity=0.533 Sum_probs=39.6
Q ss_pred cccccccCCCccc----ceeeccCCCCCceeeccCCCCCC------CCCCCCccccccccccc
Q 013828 3 TVCQQCGDKGFYE----ALIGCEKCQTTAVHIYCLPVLPA------SFEDDVLWYCEDCEPKV 55 (436)
Q Consensus 3 tVC~ICGD~GfED----~LllCd~Cd~~AeHtYCL~~~l~------sVPE~g~W~C~eCqs~~ 55 (436)
..|.+|+..-.++ .++.||.|+. -+|.-|.++... .+|+...|+|+.|....
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~-W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDR-WVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCC-EEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCc-ccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 4699999876554 3999999996 799999998421 23443589999998653
No 53
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=95.45 E-value=0.005 Score=64.23 Aligned_cols=51 Identities=27% Similarity=0.645 Sum_probs=38.5
Q ss_pred cccccccCCCccc-------------------------------ceeeccCCCCCceeeccCCCCCCCCCCCCccccccc
Q 013828 3 TVCQQCGDKGFYE-------------------------------ALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDC 51 (436)
Q Consensus 3 tVC~ICGD~GfED-------------------------------~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eC 51 (436)
-+|..||..+.++ .++.||.|+. =+|.-|.++..........|+|+.|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~kk~~~~~n~~~~mI~CD~C~~-WfH~~CVgi~~~~a~~~~~y~Cp~C 91 (528)
T 3pur_A 13 DRCGGCGKFTHEDDLIALEEEKKKEKEKPLMSKKKSHHHKKNDFQWIGCDSCQT-WYHFLCSGLEQFEYYLYEKFFCPKC 91 (528)
T ss_dssp CCCTTTCCCC-------------------CCSCCCTTTTTTSTTSEEECTTTCC-EEEGGGTTCCGGGTTTEEECCCTTT
T ss_pred chhhcccCCCchhhHHHHHHHhhhhhhhccccccccccCCCcCCCEEECCCCCc-CCCCcCCCCChhHhcCCCeEECcCC
Confidence 4799999988875 5679999996 7999999986444332378999999
Q ss_pred ccc
Q 013828 52 EPK 54 (436)
Q Consensus 52 qs~ 54 (436)
...
T Consensus 92 ~~~ 94 (528)
T 3pur_A 92 VPH 94 (528)
T ss_dssp HHH
T ss_pred cCC
Confidence 865
No 54
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=95.30 E-value=0.0022 Score=65.55 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=39.8
Q ss_pred ccccccCCCc-ccceeeccCCCCCceeeccCCCCCCCCCCCCccccccccccc
Q 013828 4 VCQQCGDKGF-YEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (436)
Q Consensus 4 VC~ICGD~Gf-ED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~ 55 (436)
+.++||...+ ...++.||.|+. -+|..|+++.....+....|+|+.|....
T Consensus 38 ~yC~C~~~~d~~~~MIqCd~C~~-WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 38 VYCVCRQPYDVNRFMIECDICKD-WFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp EETTTTEECCTTSCEEEBTTTCC-EEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred eEEeCCCcCCCCCCeEEccCCCC-ceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 4469998754 678999999995 89999999864444333689999998654
No 55
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=95.26 E-value=0.0016 Score=66.25 Aligned_cols=54 Identities=28% Similarity=0.381 Sum_probs=42.3
Q ss_pred CcccccccCCCc-ccceeeccCCCCCceeeccCCCCCCCCCCCCcccccccccccC
Q 013828 2 VTVCQQCGDKGF-YEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVA 56 (436)
Q Consensus 2 vtVC~ICGD~Gf-ED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~~ 56 (436)
+.+.++||...+ ...++.||.|+. -+|.-|+++.....+..+.|+|+.|.....
T Consensus 4 ~~~yCiC~~~~d~~~~MIqCD~C~~-WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 4 VPVYCLCRLPYDVTRFMIECDMCQD-WFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp CCEETTTTEECCTTSCEEECTTTCC-EEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred CCeEEeCCCcCCCCCCeEEcCCCCc-ccccccCCcCcccccCCCEEECCCCccccC
Confidence 567889999855 678999999996 899999998543333236899999986643
No 56
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=93.85 E-value=0.013 Score=49.00 Aligned_cols=49 Identities=24% Similarity=0.590 Sum_probs=36.9
Q ss_pred cccccccCCCcccceeeccCCCCCceeeccCCCC-----------CCCCCCCCccccccccc
Q 013828 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVL-----------PASFEDDVLWYCEDCEP 53 (436)
Q Consensus 3 tVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~-----------l~sVPE~g~W~C~eCqs 53 (436)
.-|.||.... .+.|+-|.-|.+ .+|.-|+..+ +...+...-|.|+.|..
T Consensus 16 ~~C~VC~~~t-~~~l~pCRvC~R-vfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 16 EMCDVCEVWT-AESLFPCRVCTR-VFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCTTTCCCC-SSCCSSCSSSSS-CCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred cccCcccccc-ccceeccccccc-cccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 4699999777 566889999995 8999998763 12233358999999954
No 57
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=89.76 E-value=0.15 Score=40.72 Aligned_cols=38 Identities=24% Similarity=0.646 Sum_probs=31.1
Q ss_pred eeeccCCCCCceeeccCCCCC------CCCCCCCccccccccccc
Q 013828 17 LIGCEKCQTTAVHIYCLPVLP------ASFEDDVLWYCEDCEPKV 55 (436)
Q Consensus 17 LllCd~Cd~~AeHtYCL~~~l------~sVPE~g~W~C~eCqs~~ 55 (436)
++.||.|++ -+|.-|.++.. ..+|+...|.|+.|....
T Consensus 2 mi~c~~c~~-w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 2 MMQCGKCDR-WVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCCCSCCSS-CHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred ccccccCCC-ccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 678999998 69999998743 466766789999998654
No 58
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=75.95 E-value=0.45 Score=38.82 Aligned_cols=38 Identities=13% Similarity=0.281 Sum_probs=29.7
Q ss_pred cccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCcccccccccccC
Q 013828 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVA 56 (436)
Q Consensus 3 tVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~~ 56 (436)
++|.+|+..+ |+.|+. ..|.||++. ..|.|.+|....-
T Consensus 8 ~~C~~C~~~~-------C~~C~~-c~~~~~~~~--------~~~~~~~c~~~~~ 45 (117)
T 4bbq_A 8 RKCKACVQGE-------CGVCHY-CRDMKKFGG--------PGRMKQSCVLRQC 45 (117)
T ss_dssp SCSHHHHSCC-------CSCSHH-HHHSGGGTS--------CCCSCCCCGGGCC
T ss_pred CcCcCcCCcC-------CCCCCC-CcCCcccCC--------CCccccchhheee
Confidence 5788888652 999985 799999875 3699999976653
No 59
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=73.77 E-value=2.7 Score=35.37 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=34.9
Q ss_pred ccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCcccccccccc
Q 013828 4 VCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (436)
Q Consensus 4 VC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~ 54 (436)
.|.+||.... +.|..|-. ++|..|+...+...|. .-|+| |.+.
T Consensus 60 ~C~~C~k~~~----~~C~~Cp~-sfC~~c~~g~l~~~~~-~~~~c--~~~~ 102 (107)
T 4gne_A 60 QCDECSSAAV----SFCEFCPH-SFCKDHEKGALVPSAL-EGRLC--CSEH 102 (107)
T ss_dssp BCTTTCSBCC----EECSSSSC-EECTTTCTTSCEECTT-TTCEE--CTTS
T ss_pred CCCcCCCCCC----cCcCCCCc-chhhhccCCcceecCC-CCcee--cCCC
Confidence 4778888765 89999995 8999999998877774 78998 5544
No 60
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.46 E-value=1.8 Score=34.12 Aligned_cols=49 Identities=22% Similarity=0.450 Sum_probs=38.0
Q ss_pred CcccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCcccccccccccC
Q 013828 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVA 56 (436)
Q Consensus 2 vtVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~~ 56 (436)
+..|.||-+.-... ..|..|.. ++|.+|+...+.+- ..-.|+-|+..-.
T Consensus 15 i~~C~IC~~~i~~g--~~C~~C~h-~fH~~Ci~kWl~~~---~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQG--QSCETCGI-RMHLPCVAKYFQSN---AEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSSS--EECSSSCC-EECHHHHHHHSTTC---SSCCCTTTCSCCC
T ss_pred CCcCcchhhHcccC--CccCCCCc-hhhHHHHHHHHHhc---CCCCCCCCcCcCC
Confidence 57899999988765 47889996 89999998766553 2357999986644
No 61
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.94 E-value=4 Score=33.59 Aligned_cols=36 Identities=28% Similarity=0.628 Sum_probs=30.2
Q ss_pred ccceeeccCCCCCceeeccCCCCCCCCCCCCccccccccc
Q 013828 14 YEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEP 53 (436)
Q Consensus 14 ED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs 53 (436)
+-.|++|.-|.....|..|+.+. .- +..|.|..|..
T Consensus 43 ~W~L~lC~~Cgs~gtH~~Cs~l~--~~--~~~weC~~C~~ 78 (85)
T 1weq_A 43 RWRLILCATCGSHGTHRDCSSLR--PN--SKKWECNECLP 78 (85)
T ss_dssp TTBCEECSSSCCCEECSGGGTCC--TT--CSCCCCTTTSC
T ss_pred CEEEEeCcccCCchhHHHHhCCc--CC--CCCEECCcCcc
Confidence 46799999999999999999962 22 46999999983
No 62
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=65.11 E-value=2.6 Score=35.50 Aligned_cols=53 Identities=17% Similarity=0.449 Sum_probs=40.4
Q ss_pred CcccccccCC----CcccceeeccCCCCCceeeccCCCCCCCCCCCCcccccccccccCCCC
Q 013828 2 VTVCQQCGDK----GFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKPS 59 (436)
Q Consensus 2 vtVC~ICGD~----GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~~~~s 59 (436)
..+|+||||. .+-++-+-|+.|.. +.=.-|..+ ..- +|.-.|+.|..+-.+-+
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~F-PvCrpCyEY---Erk-eG~q~CpqCktrYkr~k 72 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGF-PACRPCYEY---ERR-EGTQNCPQCKTRYKRLR 72 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCC-CCCHHHHHH---HHH-TSCSSCTTTCCCCCCCT
T ss_pred CCccccccCccccCCCCCEEEeeeccCC-hhhHHHHHH---HHh-ccCccccccCCcccccc
Confidence 3589999997 45678999999985 666677776 333 38999999998866443
No 63
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=62.66 E-value=2.3 Score=39.59 Aligned_cols=47 Identities=23% Similarity=0.485 Sum_probs=37.3
Q ss_pred CcccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCcccccccccc
Q 013828 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (436)
Q Consensus 2 vtVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~ 54 (436)
+..|.+|-+.-... ..|..|.. +.|.+|+....... +.-.|+-|...
T Consensus 180 i~~C~iC~~iv~~g--~~C~~C~~-~~H~~C~~~~~~~~---~~~~CP~C~~~ 226 (238)
T 3nw0_A 180 VKICNICHSLLIQG--QSCETCGI-RMHLPCVAKYFQSN---AEPRCPHCNDY 226 (238)
T ss_dssp CCBCTTTCSBCSSC--EECSSSCC-EECHHHHHHHTTTC---SSCBCTTTCCB
T ss_pred CCcCcchhhHHhCC--cccCccCh-HHHHHHHHHHHHhC---CCCCCCCCCCC
Confidence 56899999998864 78999996 89999998765553 34579999764
No 64
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=57.26 E-value=6.7 Score=28.90 Aligned_cols=32 Identities=22% Similarity=0.590 Sum_probs=26.9
Q ss_pred CcccccccCCCcccceeeccCCCCCceeeccCCCC
Q 013828 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVL 36 (436)
Q Consensus 2 vtVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~ 36 (436)
.+.|+.|++.=+- =+.|..|+. ..|.-|...+
T Consensus 14 ~t~C~~C~k~i~~--G~kC~~Ck~-~cH~kC~~~v 45 (49)
T 1kbe_A 14 SQVCNVCQKSMIF--GVKCKHCRL-KCHNKCTKEA 45 (49)
T ss_dssp SCCCSSSCCSSCC--EEEETTTTE-EESSSCTTTS
T ss_pred CcCccccCceeEC--cCCCCCCCC-ccchhhcCcC
Confidence 4789999998884 478999995 7999999853
No 65
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=56.88 E-value=9.5 Score=28.44 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=15.0
Q ss_pred cCCCCCCCCCCCCcccccccccc
Q 013828 32 CLPVLPASFEDDVLWYCEDCEPK 54 (436)
Q Consensus 32 CL~~~l~sVPE~g~W~C~eCqs~ 54 (436)
.-+-....+|+ +|.|+.|...
T Consensus 25 ~pGt~f~~lP~--dw~CP~Cg~~ 45 (52)
T 1e8j_A 25 KPGTKFEDLPD--DWACPVCGAS 45 (52)
T ss_dssp CSSCCTTSSCT--TCCCSSSCCC
T ss_pred CCCCchHHCCC--CCcCCCCCCc
Confidence 34444567875 9999999864
No 66
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.49 E-value=17 Score=28.40 Aligned_cols=33 Identities=27% Similarity=0.609 Sum_probs=27.2
Q ss_pred CcccccccCCC--cccceeeccCCCCCceeeccCCC
Q 013828 2 VTVCQQCGDKG--FYEALIGCEKCQTTAVHIYCLPV 35 (436)
Q Consensus 2 vtVC~ICGD~G--fED~LllCd~Cd~~AeHtYCL~~ 35 (436)
.+.|..|++.= +-..-+.|..|.. ..|.-|...
T Consensus 28 pt~C~~C~~~lwGl~kqg~~C~~C~~-~~Hk~C~~~ 62 (83)
T 2yuu_A 28 PTFCSVCKDFVWGLNKQGYKCRQCNA-AIHKKCIDK 62 (83)
T ss_dssp CCCCSSSCCCCCSSSCCEEEETTTCC-EECTTGGGT
T ss_pred CcChhhcChhhccccccccccCCcCC-eeChhhhhh
Confidence 47899999874 3567789999995 899999985
No 67
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=53.89 E-value=10 Score=34.69 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=30.1
Q ss_pred cccCCCc-ccceeeccCCCCCceeeccCCCCCCCCCCCCcc----ccccccc
Q 013828 7 QCGDKGF-YEALIGCEKCQTTAVHIYCLPVLPASFEDDVLW----YCEDCEP 53 (436)
Q Consensus 7 ICGD~Gf-ED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W----~C~eCqs 53 (436)
-||..|+ ....++|+.|.. -+|.-|+......+- ++++ .|..|-.
T Consensus 9 YCG~~~~~~~~mLqC~~C~q-WFH~~Cl~~~~~~~l-p~~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 9 DEENGRQLGEVELQCGICTK-WFTADTFGIDTSSCL-PFMTNYSFHCNVCHH 58 (177)
T ss_dssp --CTTCCTTSCEEECTTTCC-EEEGGGGTCCCTTCC-TTCCSEEEECTTTST
T ss_pred EcCCCCCCCceeEeeccccc-eecHHHhcccccCcc-ccceeEEEEccccCC
Confidence 4777665 567889999997 899999985433321 2343 4999953
No 68
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=53.85 E-value=5.4 Score=32.64 Aligned_cols=41 Identities=24% Similarity=0.551 Sum_probs=26.5
Q ss_pred CCcccccccCC-CcccceeeccCCCCCceeeccCCCCCCCCCCCCcccccccccccC
Q 013828 1 MVTVCQQCGDK-GFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVA 56 (436)
Q Consensus 1 mvtVC~ICGD~-GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~~ 56 (436)
|...|+.|+.. ........|..|+. .|+- .. ||++|....+
T Consensus 1 M~~~CP~C~~~l~~~~~~~~C~~C~~-------------~~~~-~a-fCPeCgq~Le 42 (81)
T 2jrp_A 1 MEITCPVCHHALERNGDTAHCETCAK-------------DFSL-QA-LCPDCRQPLQ 42 (81)
T ss_dssp CCCCCSSSCSCCEECSSEEECTTTCC-------------EEEE-EE-ECSSSCSCCC
T ss_pred CCCCCCCCCCccccCCCceECccccc-------------cCCC-cc-cCcchhhHHH
Confidence 67889999844 22334666888885 3432 33 8888876653
No 69
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=53.47 E-value=4.6 Score=32.52 Aligned_cols=31 Identities=23% Similarity=0.602 Sum_probs=26.7
Q ss_pred ccccccCCCcccceeeccCCCCCceeeccCCCC
Q 013828 4 VCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVL 36 (436)
Q Consensus 4 VC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~ 36 (436)
.|.+|+..+ ......|..|+. ..|..|+..+
T Consensus 49 ~C~~C~~~~-~~~~Y~C~~C~f-~lH~~Ca~~p 79 (89)
T 1v5n_A 49 TCDKCEEEG-TIWSYHCDECDF-DLHAKCALNE 79 (89)
T ss_dssp CCTTTSCCC-CSCEEECTTTCC-CCCHHHHHCS
T ss_pred EeCCCCCcC-CCcEEEcCCCCC-eEcHHhcCCC
Confidence 699999987 467899999996 7999998764
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=49.40 E-value=1.2 Score=33.36 Aligned_cols=49 Identities=27% Similarity=0.445 Sum_probs=35.3
Q ss_pred CcccccccCCCcccceeeccCCCC--CceeeccCCCCCCCCCCCCcccccccccc
Q 013828 2 VTVCQQCGDKGFYEALIGCEKCQT--TAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (436)
Q Consensus 2 vtVC~ICGD~GfED~LllCd~Cd~--~AeHtYCL~~~l~sVPE~g~W~C~eCqs~ 54 (436)
...|-||-+.+.++++.-| .|.. ..+|..|+..-+.. .+.+.|+-|...
T Consensus 6 ~~~CrIC~~~~~~~l~~PC-~C~gs~~~~H~~Cl~~W~~~---~~~~~C~~C~~~ 56 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRAC-GCTGELENVHRSCLSTWLTI---SRNTACQICGVV 56 (60)
T ss_dssp CCEETTTTEECSCCCCCSC-CCSSGGGSCCHHHHHHHHHH---HTCSBCTTTCCB
T ss_pred CCEeEEeecCCCCceecCc-CCCCchhhhHHHHHHHHHHh---CCCCccCCCCCe
Confidence 3579999877777777777 4752 27999999874332 356899999865
No 71
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=47.80 E-value=7.8 Score=31.64 Aligned_cols=35 Identities=26% Similarity=0.474 Sum_probs=22.6
Q ss_pred cceeeccCCCCCceeecc-----------CCCCCCCCCCCCccccccccccc
Q 013828 15 EALIGCEKCQTTAVHIYC-----------LPVLPASFEDDVLWYCEDCEPKV 55 (436)
Q Consensus 15 D~LllCd~Cd~~AeHtYC-----------L~~~l~sVPE~g~W~C~eCqs~~ 55 (436)
-....|..|.. +|= -+.....+|+ +|.|+.|....
T Consensus 25 m~~y~C~vCGy----vYD~~~Gdp~~gI~pGT~fedlPd--dW~CPvCga~K 70 (81)
T 2kn9_A 25 YKLFRCIQCGF----EYDEALGWPEDGIAAGTRWDDIPD--DWSCPDCGAAK 70 (81)
T ss_dssp CCEEEETTTCC----EEETTTCBTTTTBCTTCCTTTSCT--TCCCTTTCCCG
T ss_pred cceEEeCCCCE----EEcCCcCCcccCcCCCCChhHCCC--CCcCCCCCCCH
Confidence 34677888862 342 2333456875 89999998643
No 72
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=47.57 E-value=5.8 Score=32.78 Aligned_cols=19 Identities=26% Similarity=0.607 Sum_probs=13.9
Q ss_pred CCCCCCCCCCCcccccccccc
Q 013828 34 PVLPASFEDDVLWYCEDCEPK 54 (436)
Q Consensus 34 ~~~l~sVPE~g~W~C~eCqs~ 54 (436)
+.....+|+ +|.|+.|...
T Consensus 59 GT~fedlPd--dW~CPvCga~ 77 (87)
T 1s24_A 59 GTRFEDIPD--DWCCPDCGAT 77 (87)
T ss_dssp CCCGGGCCT--TCCCSSSCCC
T ss_pred CCChhHCCC--CCCCCCCCCC
Confidence 334467875 8999999854
No 73
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=47.39 E-value=8.1 Score=30.46 Aligned_cols=20 Identities=15% Similarity=0.365 Sum_probs=14.3
Q ss_pred CCCCCCCCCCCccccccccccc
Q 013828 34 PVLPASFEDDVLWYCEDCEPKV 55 (436)
Q Consensus 34 ~~~l~sVPE~g~W~C~eCqs~~ 55 (436)
+.....+|+ +|.|+.|....
T Consensus 31 GT~f~~lPd--dw~CP~Cga~K 50 (70)
T 1dx8_A 31 GTPFVDLSD--SFMCPACRSPK 50 (70)
T ss_dssp SCCGGGSCT--TCBCTTTCCBG
T ss_pred CCchhhCCC--CCcCCCCCCCH
Confidence 334466875 89999997654
No 74
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=47.24 E-value=7 Score=28.76 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=12.3
Q ss_pred CCCCCCCCcccccccccc
Q 013828 37 PASFEDDVLWYCEDCEPK 54 (436)
Q Consensus 37 l~sVPE~g~W~C~eCqs~ 54 (436)
...+|+ +|.|+.|-..
T Consensus 24 f~~lP~--dw~CP~Cg~~ 39 (46)
T 6rxn_A 24 FDQLPD--DWCCPVCGVS 39 (46)
T ss_dssp GGGSCT--TCBCTTTCCB
T ss_pred hhhCCC--CCcCcCCCCc
Confidence 457874 8999999754
No 75
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=46.11 E-value=12 Score=26.29 Aligned_cols=32 Identities=19% Similarity=0.479 Sum_probs=27.2
Q ss_pred CcccccccCCCcccceeeccCCCCCceeeccCCCC
Q 013828 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVL 36 (436)
Q Consensus 2 vtVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~ 36 (436)
.+.|..||+.-+ .-+.|..|+. ..|.-|....
T Consensus 14 pt~C~~C~~~l~--qG~~C~~C~~-~~H~~C~~~v 45 (52)
T 1faq_A 14 LAFCDICQKFLL--NGFRCQTCGY-KFHEHCSTKV 45 (52)
T ss_dssp CEECTTSSSEEC--SEEECTTTTC-CBCSTTSSSS
T ss_pred CcCCCCcccccc--cCCEeCCCCC-eEChhHHhhC
Confidence 478999999877 7889999995 8999999863
No 76
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=44.82 E-value=9.9 Score=28.28 Aligned_cols=33 Identities=33% Similarity=0.748 Sum_probs=28.1
Q ss_pred CcccccccCC--CcccceeeccCCCCCceeeccCCC
Q 013828 2 VTVCQQCGDK--GFYEALIGCEKCQTTAVHIYCLPV 35 (436)
Q Consensus 2 vtVC~ICGD~--GfED~LllCd~Cd~~AeHtYCL~~ 35 (436)
.+.|..|++. |....-+.|..|+. ..|.-|...
T Consensus 20 pt~C~~C~~~l~Gl~~qg~~C~~C~~-~~Hk~C~~~ 54 (65)
T 3uej_A 20 PTFCDHCGSLLWGLVKQGLKCEDCGM-NVHHKCREK 54 (65)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCC-EECHHHHTT
T ss_pred CCcccccChhhhccCceeeECCCCCC-eEchhHhhh
Confidence 4689999996 66678899999995 899999885
No 77
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=42.82 E-value=12 Score=26.50 Aligned_cols=27 Identities=30% Similarity=0.781 Sum_probs=19.6
Q ss_pred CcccccccCCCcccceeeccCCCCCceeeccCCC
Q 013828 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPV 35 (436)
Q Consensus 2 vtVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~ 35 (436)
...|..||.. .++.|.+|. .+.||...
T Consensus 9 ~~~C~~C~~~----~~~~C~~C~---~~~YCs~~ 35 (52)
T 2jw6_A 9 EQSCVNCGRE----AMSECTGCH---KVNYCSTF 35 (52)
T ss_dssp --CCSSSSSS----CSEECTTTC---SSEESSHH
T ss_pred CCcCCCCCCC----CcCcCCCCC---CEeecCHH
Confidence 3579999884 689999997 46788753
No 78
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=42.78 E-value=19 Score=26.86 Aligned_cols=33 Identities=30% Similarity=0.729 Sum_probs=27.4
Q ss_pred CcccccccCC--CcccceeeccCCCCCceeeccCCC
Q 013828 2 VTVCQQCGDK--GFYEALIGCEKCQTTAVHIYCLPV 35 (436)
Q Consensus 2 vtVC~ICGD~--GfED~LllCd~Cd~~AeHtYCL~~ 35 (436)
.+.|+.|++. |.-..-+.|..|.. ..|.-|...
T Consensus 23 pt~C~~C~~~l~Gl~~qg~~C~~C~~-~~Hk~C~~~ 57 (65)
T 2enz_A 23 PTFCEHCGTLLWGLARQGLKCDACGM-NVHHRCQTK 57 (65)
T ss_dssp CCBCSSSCCBCCCSSSCSEEESSSCC-EECTTTTTT
T ss_pred CcCchhcChhheecCCcccccCCCCC-ccCHhHHhh
Confidence 4789999996 44567789999995 899999986
No 79
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=42.37 E-value=21 Score=26.23 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=34.7
Q ss_pred CcccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCcccccccccccCCCCCccCC
Q 013828 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKPSTIVNP 64 (436)
Q Consensus 2 vtVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~~~~s~~~n~ 64 (436)
...|.||-+.-.....+.--.|.. .+|..|+...+. ....|+-|+..........|+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H-~fc~~Ci~~~~~-----~~~~CP~Cr~~~~~~~~~~~~ 71 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNH-LFHDSCIVPWLE-----QHDSCPVCRKSLTGQNTATNP 71 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSC-EEETTTTHHHHT-----TTCSCTTTCCCCCCSCSCCCC
T ss_pred CCCCeeCCccccCCCCEEEeCCCC-eecHHHHHHHHH-----cCCcCcCcCCccCCcccCCCC
Confidence 357999987643322222124876 578888775332 235899999887665544444
No 80
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=42.30 E-value=14 Score=27.26 Aligned_cols=27 Identities=33% Similarity=0.746 Sum_probs=20.3
Q ss_pred CcccccccCCCcccceeeccCCCCCceeeccCCC
Q 013828 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPV 35 (436)
Q Consensus 2 vtVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~ 35 (436)
...|..||. ..++.|.+|.. +.||...
T Consensus 15 ~~~C~~C~~----~~~~~Cs~C~~---v~YCs~~ 41 (60)
T 2dj8_A 15 SESCWNCGR----KASETCSGCNT---ARYCGSF 41 (60)
T ss_dssp SCCCSSSCS----CCCEECTTTSC---CEESSHH
T ss_pred CcccccCCC----CCcccCCCCCC---EeeeCHH
Confidence 357999988 35889999974 6788753
No 81
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=41.76 E-value=9.4 Score=28.75 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=14.1
Q ss_pred CCCCCCCCCCCccccccccccc
Q 013828 34 PVLPASFEDDVLWYCEDCEPKV 55 (436)
Q Consensus 34 ~~~l~sVPE~g~W~C~eCqs~~ 55 (436)
+-....+|+ +|.|+.|....
T Consensus 27 Gt~f~~lP~--dw~CP~Cga~K 46 (55)
T 2v3b_B 27 GTRWEDIPA--DWVCPDCGVGK 46 (55)
T ss_dssp TCCGGGSCT--TCCCTTTCCCG
T ss_pred CCChhHCCC--CCcCCCCCCCH
Confidence 334456874 99999998643
No 82
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=41.44 E-value=15 Score=27.23 Aligned_cols=27 Identities=37% Similarity=0.770 Sum_probs=20.7
Q ss_pred CcccccccCCCcccceeeccCCCCCceeeccCCC
Q 013828 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPV 35 (436)
Q Consensus 2 vtVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~ 35 (436)
...|..||.. .+..|.+|+. +.||...
T Consensus 13 ~~~C~~C~~~----~~~~Cs~C~~---v~YCs~~ 39 (60)
T 2od1_A 13 SESCWNCGRK----ASETCSGCNT---ARYCGSF 39 (60)
T ss_dssp SSCCTTTSSC----CCEECTTTSC---CEESSHH
T ss_pred CCccccCCCc----ccccCCCCCC---eeecCHH
Confidence 3579999983 5899999974 6788753
No 83
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=40.42 E-value=11 Score=28.07 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=13.8
Q ss_pred CCCCCCCCCCCcccccccccc
Q 013828 34 PVLPASFEDDVLWYCEDCEPK 54 (436)
Q Consensus 34 ~~~l~sVPE~g~W~C~eCqs~ 54 (436)
+-....+|+ +|.|+.|...
T Consensus 26 Gt~f~~lP~--dw~CP~Cg~~ 44 (52)
T 1yk4_A 26 GTKFEDLPD--DWVCPLCGAP 44 (52)
T ss_dssp TCCGGGSCT--TCBCTTTCCB
T ss_pred CCCHhHCCC--CCcCCCCCCC
Confidence 334457875 9999999864
No 84
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=39.25 E-value=16 Score=27.12 Aligned_cols=27 Identities=37% Similarity=0.770 Sum_probs=20.6
Q ss_pred CcccccccCCCcccceeeccCCCCCceeeccCCC
Q 013828 2 VTVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPV 35 (436)
Q Consensus 2 vtVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~ 35 (436)
...|..||.. .+..|.+|.. +.||...
T Consensus 17 ~~~C~~C~~~----~~~~Cs~C~~---~~YCs~~ 43 (64)
T 2odd_A 17 SESCWNCGRK----ASETCSGCNT---ARYCGSF 43 (64)
T ss_dssp SSSCTTTSSC----CCEEETTTSC---CEESSHH
T ss_pred CCcCccccCC----CcccCCCCCC---hhhCCHH
Confidence 3579999983 5899999974 6788753
No 85
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=36.38 E-value=11 Score=26.56 Aligned_cols=24 Identities=25% Similarity=0.772 Sum_probs=17.3
Q ss_pred eccCCCCCCCCCCC--Ccccccccccc
Q 013828 30 IYCLPVLPASFEDD--VLWYCEDCEPK 54 (436)
Q Consensus 30 tYCL~~~l~sVPE~--g~W~C~eCqs~ 54 (436)
+||..+- ..-|.| |+|-|..|..+
T Consensus 2 tycielg-ercpnpregdwcchkcvpe 27 (36)
T 4b2u_A 2 TYCIELG-ERCPNPREGDWCCHKCVPE 27 (36)
T ss_dssp CSSCCTT-SBCCCGGGCCSSSSEEEEE
T ss_pred ceeeecc-ccCcCCCccCeeeeccccc
Confidence 6887763 455544 99999999864
No 86
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=35.26 E-value=19 Score=25.04 Aligned_cols=33 Identities=30% Similarity=0.654 Sum_probs=27.1
Q ss_pred CcccccccCCCc--ccceeeccCCCCCceeeccCCC
Q 013828 2 VTVCQQCGDKGF--YEALIGCEKCQTTAVHIYCLPV 35 (436)
Q Consensus 2 vtVC~ICGD~Gf--ED~LllCd~Cd~~AeHtYCL~~ 35 (436)
.+.|+.||+.=+ -..-+.|..|+. ..|.-|...
T Consensus 11 pt~C~~C~~~l~g~~~qg~~C~~C~~-~~H~~C~~~ 45 (50)
T 1ptq_A 11 PTFCDHCGSLLWGLVKQGLKCEDCGM-NVHHKCREK 45 (50)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCC-EECHHHHTT
T ss_pred CCCcCCCCceeeccCCccCEeCCCCC-eECHHHhhh
Confidence 478999998643 467789999995 899999885
No 87
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=34.69 E-value=13 Score=31.66 Aligned_cols=40 Identities=25% Similarity=0.529 Sum_probs=25.6
Q ss_pred CCcccccccCC-CcccceeeccCCCCCceeeccCCCCCCCCCCCCccccccccccc
Q 013828 1 MVTVCQQCGDK-GFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (436)
Q Consensus 1 mvtVC~ICGD~-GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~ 55 (436)
|...|++|+.. ....--+.|+.|+. .|. ..-+||+|....
T Consensus 31 M~~~CP~Cq~eL~~~g~~~hC~~C~~-------------~f~--~~a~CPdC~q~L 71 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNGHARCRSCGE-------------FIE--MKALCPDCHQPL 71 (101)
T ss_dssp CCCBCSSSCSBEEEETTEEEETTTCC-------------EEE--EEEECTTTCSBC
T ss_pred ccccCccCCCcceecCCEEECccccc-------------hhh--ccccCcchhhHH
Confidence 66789999854 33444667888875 121 355788886554
No 88
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.91 E-value=35 Score=26.79 Aligned_cols=33 Identities=27% Similarity=0.656 Sum_probs=27.3
Q ss_pred CcccccccCCC--cccceeeccCCCCCceeeccCCC
Q 013828 2 VTVCQQCGDKG--FYEALIGCEKCQTTAVHIYCLPV 35 (436)
Q Consensus 2 vtVC~ICGD~G--fED~LllCd~Cd~~AeHtYCL~~ 35 (436)
.+.|..|++.= .-..-+.|..|.. ..|.-|...
T Consensus 28 pt~C~~C~~~l~Gl~kqG~~C~~C~~-~~Hk~C~~~ 62 (85)
T 2eli_A 28 PTFCDHCGSLLYGLIHQGMKCDTCDM-NVHKQCVIN 62 (85)
T ss_dssp CCBCSSSCCBCCCSSSCEEECSSSCC-EEETTTTTT
T ss_pred CcCCcccCccccccccCCCcCCCcCC-ccCHhHHhh
Confidence 47899999864 3467789999995 899999986
No 89
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=33.44 E-value=11 Score=34.05 Aligned_cols=49 Identities=20% Similarity=0.541 Sum_probs=33.5
Q ss_pred cccccccCCCcccceeecc--CCCCCceeeccCCCC-----CCCCCCCCccccccccccc
Q 013828 3 TVCQQCGDKGFYEALIGCE--KCQTTAVHIYCLPVL-----PASFEDDVLWYCEDCEPKV 55 (436)
Q Consensus 3 tVC~ICGD~GfED~LllCd--~Cd~~AeHtYCL~~~-----l~sVPE~g~W~C~eCqs~~ 55 (436)
.-|-+||+.| .|+.|+ .|-. ++=.-|+... +..+-+...|.|.=|....
T Consensus 80 ~yC~wC~~Gg---~l~~Cdn~~C~r-~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 80 SYCTICCGGR---EVLMCGNNNCCR-CFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp SSCTTTSCCS---EEEECSSTTTCC-EEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred ceeeEecCCC---eEEeeCCCCCCC-chhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 4699999876 799999 6874 5555555432 2233334799999998653
No 90
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=32.56 E-value=33 Score=26.51 Aligned_cols=33 Identities=27% Similarity=0.687 Sum_probs=27.3
Q ss_pred CcccccccCC--CcccceeeccCCCCCceeeccCCC
Q 013828 2 VTVCQQCGDK--GFYEALIGCEKCQTTAVHIYCLPV 35 (436)
Q Consensus 2 vtVC~ICGD~--GfED~LllCd~Cd~~AeHtYCL~~ 35 (436)
.+.|+.|++. |.-..-+.|..|.. ..|.-|...
T Consensus 34 pt~C~~C~~~lwGl~kqG~~C~~C~~-~~Hk~C~~~ 68 (77)
T 2enn_A 34 PTFCSVCHEFVWGLNKQGYQCRQCNA-AIHKKCIDK 68 (77)
T ss_dssp CEECSSSCCEECCTTCCEEECSSSCC-EEESGGGSS
T ss_pred CcCccccChhhccccccccCcCCCCC-cCCHhHHhh
Confidence 4789999985 44567789999985 899999986
No 91
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.56 E-value=11 Score=27.40 Aligned_cols=56 Identities=23% Similarity=0.374 Sum_probs=34.1
Q ss_pred CcccccccCCCcc-cceeeccCCCCCceeeccCCCCCCCCCCCCcccccccccccCCCCCccCC
Q 013828 2 VTVCQQCGDKGFY-EALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKPSTIVNP 64 (436)
Q Consensus 2 vtVC~ICGD~GfE-D~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~~~~s~~~n~ 64 (436)
...|.||-+.-.. +.+... .|.. .+|..|+...+.. ...|+-|+..........++
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~-~C~H-~f~~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~~~~ 71 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGIC-PCKH-AFHRKCLIKWLEV-----RKVCPLCNMPVLQLAQLSGP 71 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEE-TTTE-EEEHHHHHHHHHH-----CSBCTTTCCBCSSCCSCCCS
T ss_pred CCCCcCCCcccCCCCcEEEc-CCCC-EecHHHHHHHHHc-----CCcCCCcCcccccccccCCC
Confidence 3579999887433 333333 4876 5888888754322 23799998776544433333
No 92
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.34 E-value=15 Score=28.69 Aligned_cols=53 Identities=28% Similarity=0.510 Sum_probs=32.5
Q ss_pred cccccccCCCc-cccee-eccCCC--CCceeeccCCCCCCCCCCCCcccccccccccCCCC
Q 013828 3 TVCQQCGDKGF-YEALI-GCEKCQ--TTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAKPS 59 (436)
Q Consensus 3 tVC~ICGD~Gf-ED~Ll-lCd~Cd--~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~~~~s 59 (436)
..|.||-+... ++.|+ -| +|. ...+|..|+..-+.. .+...|+-|+..-....
T Consensus 16 ~~C~IC~~~~~~~~~l~~pC-~C~Gs~h~fH~~Cl~~Wl~~---~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 16 DICRICHCEGDDESPLITPC-HCTGSLHFVHQACLQQWIKS---SDTRCCELCKYEFIMET 72 (80)
T ss_dssp CCCSSSCCCCCSSSCEECSS-SCCSSSCCEETTHHHHHHHH---HCCSBCSSSCCBCCCCC
T ss_pred CCCeEcCccccCCCeeEecc-ccCCcCCeeCHHHHHHHHhh---CCCCCCCCCCCeeecCc
Confidence 57999986543 23333 33 243 137999999864332 23468999987765433
No 93
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.72 E-value=54 Score=24.71 Aligned_cols=9 Identities=22% Similarity=0.545 Sum_probs=5.1
Q ss_pred Ccccccccc
Q 013828 44 VLWYCEDCE 52 (436)
Q Consensus 44 g~W~C~eCq 52 (436)
..+.|+.|.
T Consensus 79 ~~~~C~~C~ 87 (115)
T 2dmi_A 79 KVLKCMYCG 87 (115)
T ss_dssp SSCBCSSSC
T ss_pred cceECCCCC
Confidence 345666664
No 94
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=30.02 E-value=15 Score=24.69 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=10.3
Q ss_pred CCccccccccccc
Q 013828 43 DVLWYCEDCEPKV 55 (436)
Q Consensus 43 ~g~W~C~eCqs~~ 55 (436)
+|+|+|+.|....
T Consensus 3 ~gDW~C~~C~~~N 15 (32)
T 2lk0_A 3 FEDWLCNKCCLNN 15 (32)
T ss_dssp CSEEECTTTCCEE
T ss_pred CCCCCcCcCcCCc
Confidence 5899999996543
No 95
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=28.59 E-value=7.2 Score=39.46 Aligned_cols=48 Identities=23% Similarity=0.585 Sum_probs=31.8
Q ss_pred cccccccCCCcccceeecc--CCCCCceeeccCCCC-----CCCCCCCCcccccccccc
Q 013828 3 TVCQQCGDKGFYEALIGCE--KCQTTAVHIYCLPVL-----PASFEDDVLWYCEDCEPK 54 (436)
Q Consensus 3 tVC~ICGD~GfED~LllCd--~Cd~~AeHtYCL~~~-----l~sVPE~g~W~C~eCqs~ 54 (436)
.-|-+||+.| .|++|+ .|-. ++=.-|+... ++.+-+...|.|.-|...
T Consensus 94 ~yCr~C~~Gg---~l~~Cdn~~C~r-~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 94 SYCSICCSGE---TLLICGNPDCTR-CYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp CSCTTTCCCS---SCEECCSTTCCC-EECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred ccceEcCCCC---eEEEeCCCCCCc-chHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 4699999887 599999 7753 3334444332 223333478999999865
No 96
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.35 E-value=17 Score=24.87 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=17.8
Q ss_pred cceeeccCCCCCceeeccCCCCCCCCCCCCccccccccc
Q 013828 15 EALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEP 53 (436)
Q Consensus 15 D~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs 53 (436)
+..+.|..|+..+....=+.. ...+.|+.|..
T Consensus 16 ~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~ 47 (73)
T 2ctu_A 16 DRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRK 47 (73)
T ss_dssp CSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHH
T ss_pred CCCeeCCcccchhCCHHHhCc-------CCCCCCCCCCh
Confidence 456778888764333322222 24677887753
No 97
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=25.96 E-value=21 Score=24.15 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=10.3
Q ss_pred CCccccccccccc
Q 013828 43 DVLWYCEDCEPKV 55 (436)
Q Consensus 43 ~g~W~C~eCqs~~ 55 (436)
+|+|+|+.|..-.
T Consensus 4 ~gDW~C~~C~~~N 16 (33)
T 2k1p_A 4 ANDWQCKTCSNVN 16 (33)
T ss_dssp SSSCBCSSSCCBC
T ss_pred CCCcccCCCCCcc
Confidence 5899999996543
No 98
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.34 E-value=10 Score=27.87 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=30.4
Q ss_pred cccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCccccccccccc
Q 013828 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (436)
Q Consensus 3 tVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~ 55 (436)
..|.||-+.-.....+..-.|.. .+|..|+...+.. ...|+-|+...
T Consensus 24 ~~C~IC~~~~~~~~~~~~l~C~H-~fh~~Ci~~w~~~-----~~~CP~Cr~~~ 70 (75)
T 1x4j_A 24 TLCVVCMCDFESRQLLRVLPCNH-EFHAKCVDKWLKA-----NRTCPICRADS 70 (75)
T ss_dssp CEETTTTEECCBTCEEEEETTTE-EEETTHHHHHHHH-----CSSCTTTCCCC
T ss_pred CCCeECCcccCCCCeEEEECCCC-HhHHHHHHHHHHc-----CCcCcCcCCcC
Confidence 57999997644443333345876 5888888754322 34799998654
No 99
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=22.44 E-value=41 Score=25.58 Aligned_cols=44 Identities=25% Similarity=0.563 Sum_probs=30.4
Q ss_pred cCCCcccceeeccC--CCCCceeeccCCCCCCCCCC-CCcccccccccccCCCC
Q 013828 9 GDKGFYEALIGCEK--CQTTAVHIYCLPVLPASFED-DVLWYCEDCEPKVAKPS 59 (436)
Q Consensus 9 GD~GfED~LllCd~--Cd~~AeHtYCL~~~l~sVPE-~g~W~C~eCqs~~~~~s 59 (436)
|..|-+.-.+.|.+ |+.+ +++. -.|.. ...|.|+-|........
T Consensus 1 ~~~~~~~~pvRC~r~~Cray------lNP~-~~~~~~~~~W~C~~C~~~N~~P~ 47 (59)
T 2yrc_A 1 GSSGSSGEPVLCSRTTCRAV------LNPL-CQVDYRAKLWACNFCYQRNQFPP 47 (59)
T ss_dssp CCCSSCCCCCBCSCTTTCCB------CCTT-SEEEGGGTEEECSSSCCEEECCS
T ss_pred CCccCCCCCcccCCCCCCeE------ECCc-eEEECCCCEEEcccCCCcCCCCH
Confidence 56677888999998 9863 3432 34432 24899999987765544
No 100
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=22.06 E-value=80 Score=25.17 Aligned_cols=43 Identities=19% Similarity=0.407 Sum_probs=24.7
Q ss_pred cccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCccccccccccc
Q 013828 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKV 55 (436)
Q Consensus 3 tVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~ 55 (436)
..|.||.+.-..-..+ . .|. |+||..=...-+ .-.|+-|....
T Consensus 23 ~~C~IC~~~~~~pv~~-~-~Cg----H~fC~~Ci~~~~----~~~CP~Cr~~~ 65 (117)
T 1jm7_B 23 LRCSRCTNILREPVCL-G-GCE----HIFCSNCVSDCI----GTGCPVCYTPA 65 (117)
T ss_dssp TSCSSSCSCCSSCBCC-C-SSS----CCBCTTTGGGGT----TTBCSSSCCBC
T ss_pred CCCCCCChHhhCccEe-C-CCC----CHHHHHHHHHHh----cCCCcCCCCcC
Confidence 4699998765544333 1 354 677765421111 14699998764
No 101
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=21.80 E-value=53 Score=33.73 Aligned_cols=32 Identities=31% Similarity=0.790 Sum_probs=27.3
Q ss_pred cccccccCC--CcccceeeccCCCCCceeeccCCC
Q 013828 3 TVCQQCGDK--GFYEALIGCEKCQTTAVHIYCLPV 35 (436)
Q Consensus 3 tVC~ICGD~--GfED~LllCd~Cd~~AeHtYCL~~ 35 (436)
+.|+.||.. |....-+.|..|+. ..|.-|+..
T Consensus 114 ~~C~~C~~~l~g~~~qg~~C~~C~~-~~H~~C~~~ 147 (674)
T 3pfq_A 114 TFCDHCGSLLYGLIHQGMKCDTCMM-NVHKRCVMN 147 (674)
T ss_dssp CCCSSSCSCCBBSSSCEECCSSSCC-CBCSSTTSS
T ss_pred CCCCccccccchhhcCccccccCCc-chhhhhhhc
Confidence 689999987 66678899999995 799999875
No 102
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=21.73 E-value=43 Score=22.73 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=30.7
Q ss_pred CcccccccCCCcc-cceeeccCCCCCceeeccCCCCCCCCCCCCcccccccccc
Q 013828 2 VTVCQQCGDKGFY-EALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPK 54 (436)
Q Consensus 2 vtVC~ICGD~GfE-D~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~ 54 (436)
...|.||-+.-.. +.......|.. .+|.-|+...+.. ...|+-|+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H-~f~~~Ci~~w~~~-----~~~CP~Cr~~ 52 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGH-GFHAECVDMWLGS-----HSTCPLCRLT 52 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCC-EECTTHHHHTTTT-----CCSCSSSCCC
T ss_pred CCcCccCCccccCCCceEECCCCCC-cccHHHHHHHHHc-----CCcCcCCCCE
Confidence 3579999876432 33444456876 6888888764332 4579999764
No 103
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=21.04 E-value=56 Score=23.68 Aligned_cols=50 Identities=14% Similarity=0.200 Sum_probs=29.1
Q ss_pred cccccccCCCcccceeeccCCCCCceeeccCCCCCCCC--CCCCcccccccccccC
Q 013828 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASF--EDDVLWYCEDCEPKVA 56 (436)
Q Consensus 3 tVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sV--PE~g~W~C~eCqs~~~ 56 (436)
..|.||-+.-..-.++ .|.. .+|..|+...+..- ...+.-.|+.|+....
T Consensus 13 ~~C~IC~~~~~~p~~l---~CgH-~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 13 VTCPICLELLTEPLSL---DCGH-SLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CEETTTTEECSSCCCC---SSSC-CCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred CCCcCCCcccCCeeEC---CCCC-HHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 4689998764333332 5765 46666666543331 1123668999987654
No 104
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.60 E-value=38 Score=24.30 Aligned_cols=49 Identities=18% Similarity=0.402 Sum_probs=30.2
Q ss_pred cccccccCCCcccceeeccCCCCCceeeccCCCCCCCCCCCCcccccccccccCC
Q 013828 3 TVCQQCGDKGFYEALIGCEKCQTTAVHIYCLPVLPASFEDDVLWYCEDCEPKVAK 57 (436)
Q Consensus 3 tVC~ICGD~GfED~LllCd~Cd~~AeHtYCL~~~l~sVPE~g~W~C~eCqs~~~~ 57 (436)
..|.||-+.-. +..++ .|.. .+|..|+...+..- ...-.|+-|+.....
T Consensus 21 ~~C~IC~~~~~-~~~~~--~CgH-~fC~~Ci~~~~~~~--~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 21 VICPICLDILQ-KPVTI--DCGH-NFCLKCITQIGETS--CGFFKCPLCKTSVRK 69 (73)
T ss_dssp CBCTTTCSBCS-SEEEC--TTCC-EEEHHHHHHHCSSS--CSCCCCSSSCCCCCC
T ss_pred CEeccCCcccC-CeEEc--CCCC-hhhHHHHHHHHHcC--CCCCCCCCCCCcCCc
Confidence 46999988644 33333 6875 46777776543321 245679999876543
No 105
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=20.07 E-value=40 Score=23.85 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=10.6
Q ss_pred ccccccC----CCcccceeeccCCC
Q 013828 4 VCQQCGD----KGFYEALIGCEKCQ 24 (436)
Q Consensus 4 VC~ICGD----~GfED~LllCd~Cd 24 (436)
+|+.||. .+.+.--+.|..|+
T Consensus 7 ~CP~C~~~~l~~d~~~gelvC~~CG 31 (50)
T 1pft_A 7 VCPACESAELIYDPERGEIVCAKCG 31 (50)
T ss_dssp SCTTTSCCCEEEETTTTEEEESSSC
T ss_pred eCcCCCCcceEEcCCCCeEECcccC
Confidence 5666655 12223345666665
Done!