Query 013829
Match_columns 436
No_of_seqs 206 out of 1516
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 07:48:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02608 L-ascorbate peroxidas 100.0 8.3E-69 1.8E-73 529.9 24.3 251 92-367 3-253 (289)
2 PLN02879 L-ascorbate peroxidas 100.0 6.4E-68 1.4E-72 515.5 22.3 240 95-359 9-248 (251)
3 cd00691 ascorbate_peroxidase A 100.0 4.8E-65 1E-69 496.9 24.6 240 99-360 9-252 (253)
4 PLN02364 L-ascorbate peroxidas 100.0 3.6E-65 7.8E-70 496.6 22.1 238 97-359 10-248 (250)
5 cd00693 secretory_peroxidase H 100.0 1.9E-65 4.1E-70 510.1 20.3 255 98-371 10-296 (298)
6 PLN03030 cationic peroxidase; 100.0 4.3E-65 9.4E-70 510.0 18.2 255 98-371 33-321 (324)
7 cd00692 ligninase Ligninase an 100.0 6.4E-61 1.4E-65 481.3 24.8 268 94-387 9-304 (328)
8 cd00649 catalase_peroxidase_1 100.0 3.4E-61 7.3E-66 491.1 20.8 284 64-361 13-398 (409)
9 PRK15061 catalase/hydroperoxid 100.0 2.3E-56 5.1E-61 478.5 24.4 316 64-399 25-450 (726)
10 TIGR00198 cat_per_HPI catalase 100.0 1.6E-56 3.5E-61 482.0 22.8 315 64-399 23-443 (716)
11 cd00314 plant_peroxidase_like 100.0 2.2E-55 4.8E-60 428.0 21.1 232 105-355 2-255 (255)
12 cd08201 plant_peroxidase_like_ 100.0 7E-55 1.5E-59 424.5 15.9 240 78-355 14-264 (264)
13 PF00141 peroxidase: Peroxidas 100.0 9.8E-56 2.1E-60 426.1 7.1 215 106-338 1-230 (230)
14 cd08200 catalase_peroxidase_2 100.0 3.3E-48 7.1E-53 382.1 20.8 222 113-357 23-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 2.7E-43 5.9E-48 379.8 20.7 234 102-358 426-710 (716)
16 PRK15061 catalase/hydroperoxid 100.0 2.9E-42 6.4E-47 370.1 21.2 223 113-358 448-722 (726)
17 COG0376 KatG Catalase (peroxid 100.0 1.3E-40 2.8E-45 343.4 15.6 315 64-399 38-460 (730)
18 COG0376 KatG Catalase (peroxid 99.7 1.3E-17 2.8E-22 173.7 14.8 222 113-357 458-725 (730)
19 PF11895 DUF3415: Domain of un 69.9 3.4 7.4E-05 34.3 2.1 43 341-387 2-48 (80)
20 PF04852 DUF640: Protein of un 53.4 13 0.00028 33.7 2.9 27 391-421 95-121 (132)
21 PTZ00234 variable surface prot 34.3 26 0.00057 37.7 2.2 23 412-434 359-381 (433)
22 PTZ00411 transaldolase-like pr 30.1 50 0.0011 34.4 3.3 92 167-260 148-252 (333)
23 PRK12346 transaldolase A; Prov 28.7 49 0.0011 34.2 3.0 92 167-260 137-241 (316)
24 PF09047 MEF2_binding: MEF2 bi 23.6 85 0.0018 21.8 2.4 21 384-404 4-24 (35)
25 PRK11056 hypothetical protein; 21.4 92 0.002 27.9 2.9 33 402-434 80-112 (120)
26 PF07226 DUF1422: Protein of u 20.0 82 0.0018 28.1 2.3 27 408-434 86-112 (117)
No 1
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=8.3e-69 Score=529.94 Aligned_cols=251 Identities=51% Similarity=0.838 Sum_probs=230.4
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHhhhccccCCCCCCCCCCCCCCccccchhhhhhhcccCcHHHHHH
Q 013829 92 TTKCAASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKL 171 (436)
Q Consensus 92 ~p~~~a~~~~~~~~v~~~i~~~l~~~~~aa~lLRLaFHDc~t~d~~~~~~~~~GGcDgSI~~~~E~~~~~N~GL~~~~~~ 171 (436)
+|.+.+....+++.++++|+++++++.++|.||||+||||+|||+.+ ++|||||||++++|+++++|.||.+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~llRLaFHDc~t~d~~~----~~gGcDgSIll~~E~~~~~N~gL~~g~~v 78 (289)
T PLN02608 3 APVVDAEYLKEIEKARRDLRALIASKNCAPIMLRLAWHDAGTYDAKT----KTGGPNGSIRNEEEYSHGANNGLKIAIDL 78 (289)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHCCCcHHHHHHHhhhhcCCcCCCC----CCCCCCeeeecccccCCccccchHHHHHH
Confidence 46677777888999999999999999999999999999999999986 57999999999999999999999889999
Q ss_pred HHHHHHhCCCCCHHHHHHHHhHHHHHHhCCCcccccCCCCCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHcCCChHHH
Q 013829 172 IQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEI 251 (436)
Q Consensus 172 i~~iK~~~~~VS~ADliaLAa~~AV~~~GGP~i~v~~GR~D~~~s~~~~~~g~LP~~~p~~~~~~l~~~F~~~Gls~~Em 251 (436)
|++||++++.|||||||+||+++||+.+|||.|+|++||+|++++. ++++||+ |..+++++++.|+++||+++||
T Consensus 79 id~iK~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~LP~--p~~~~~~l~~~F~~~Gl~~~D~ 153 (289)
T PLN02608 79 CEPVKAKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACP---EEGRLPD--AKKGAKHLRDVFYRMGLSDKDI 153 (289)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCC---ccCCCcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 9999999999999999999999999999999999999999999875 5678999 8899999999999999999999
Q ss_pred HHhhcccccccccCCCCCCCCCCCcccCCCCCCCCCCCccccccccchHHHHHHhhccCCCcccccccccccCCcchHHH
Q 013829 252 VALSGAHTVGRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKERRDEDLLVLPTDAVLFEDPSFKVY 331 (436)
Q Consensus 252 VALsGAHTIG~~h~~~sg~g~pd~~~~~~cP~~~~~~~~~~tp~~FDN~Yfk~Ll~~kg~~~llL~SD~aL~~D~~t~~~ 331 (436)
|+|+||||||++||.|.++.. +|+.||.+|||+||++|++++.+++++|+||++|+.|++|+.+
T Consensus 154 VaLsGAHTiG~ahc~r~g~~g----------------~~~~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~~L~~d~~T~~~ 217 (289)
T PLN02608 154 VALSGGHTLGRAHPERSGFDG----------------PWTKEPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPEFRPY 217 (289)
T ss_pred hhhccccccccccccCCCCCC----------------CCCCCCCccChHHHHHHHcCCcCCccccccCHhhhcChhHHHH
Confidence 999999999999998754321 3567899999999999999854556679999999999999999
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCCce
Q 013829 332 AEKYAEDQEAFFKDYAEAHAKLSNLGAKFDPPEGIV 367 (436)
Q Consensus 332 V~~yA~dq~~Ff~dFa~Am~KMs~lgv~tg~~~~i~ 367 (436)
|+.||.||+.|+++|++||+||+++||+|+..|++.
T Consensus 218 V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~ 253 (289)
T PLN02608 218 VELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKK 253 (289)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCccc
Confidence 999999999999999999999999999999755543
No 2
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=6.4e-68 Score=515.46 Aligned_cols=240 Identities=48% Similarity=0.844 Sum_probs=221.4
Q ss_pred CCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHhhhccccCCCCCCCCCCCCCCccccchhhhhhhcccCcHHHHHHHHH
Q 013829 95 CAASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQP 174 (436)
Q Consensus 95 ~~a~~~~~~~~v~~~i~~~l~~~~~aa~lLRLaFHDc~t~d~~~~~~~~~GGcDgSI~~~~E~~~~~N~GL~~~~~~i~~ 174 (436)
......++++.++++|++++.++.++|.||||+||||+|||+.+ ++|||||||+|.+|+++++|.||..++++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vRla~Hdagt~~~~~----~~GG~~Gsirf~~E~~~~~N~gL~~~~~~i~~ 84 (251)
T PLN02879 9 VKEEYKKAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKT----KTGGPFGTIRHPQELAHDANNGLDIAVRLLDP 84 (251)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCCCchhHhHHHHHhhhccccCCC----CCCCCCeeecChhhccCCCcCChHHHHHHHHH
Confidence 33444578888999999999999999999999999999999986 57999999999999999999999889999999
Q ss_pred HHHhCCCCCHHHHHHHHhHHHHHHhCCCcccccCCCCCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHcCCChHHHHHh
Q 013829 175 IKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVAL 254 (436)
Q Consensus 175 iK~~~~~VS~ADliaLAa~~AV~~~GGP~i~v~~GR~D~~~s~~~~~~g~LP~~~p~~~~~~l~~~F~~~Gls~~EmVAL 254 (436)
||++++.||||||||||+++||+.+|||.|+|++||+|+..+. ++++||+ |+.+++++++.|++|||+++|||||
T Consensus 85 iK~~~~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~---~~~~lP~--p~~~~~~l~~~F~~~Gl~~~dlVAL 159 (251)
T PLN02879 85 IKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPP---PEGRLPQ--ATKGVDHLRDVFGRMGLNDKDIVAL 159 (251)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCC---cccCCCC--CCCCHHHHHHHHHHcCCCHHHHeee
Confidence 9999999999999999999999999999999999999999874 6788999 8899999999999999999999999
Q ss_pred hcccccccccCCCCCCCCCCCcccCCCCCCCCCCCccccccccchHHHHHHhhccCCCcccccccccccCCcchHHHHHH
Q 013829 255 SGAHTVGRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKERRDEDLLVLPTDAVLFEDPSFKVYAEK 334 (436)
Q Consensus 255 sGAHTIG~~h~~~sg~g~pd~~~~~~cP~~~~~~~~~~tp~~FDN~Yfk~Ll~~kg~~~llL~SD~aL~~D~~t~~~V~~ 334 (436)
+||||||++||.|+|+. .+|+.||.+|||+||++|+.+...++++|+||++|+.|++|+++|++
T Consensus 160 sGaHTiG~ah~~r~g~~----------------g~~d~tp~~FDN~Yy~~ll~~~~~gll~L~SD~aL~~D~~t~~~V~~ 223 (251)
T PLN02879 160 SGGHTLGRCHKERSGFE----------------GAWTPNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDPLFLPFVEK 223 (251)
T ss_pred eccccccccccccccCC----------------CCCCCCccceeHHHHHHHHcCCcCCCccchhhHHHhcCCcHHHHHHH
Confidence 99999999999876441 13788999999999999999844557778999999999999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHcCCCC
Q 013829 335 YAEDQEAFFKDYAEAHAKLSNLGAK 359 (436)
Q Consensus 335 yA~dq~~Ff~dFa~Am~KMs~lgv~ 359 (436)
||.||+.|+++|++||+||++||+.
T Consensus 224 ~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 224 YAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred HhhCHHHHHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999973
No 3
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=4.8e-65 Score=496.87 Aligned_cols=240 Identities=61% Similarity=1.035 Sum_probs=223.1
Q ss_pred ChHHHHHHHHHHHHHHHcCCchhHHHHHHhhhccccCCCCCCCCCCCCCCccccchhhhhhhcccCcHHHHHHHHHHHHh
Q 013829 99 DPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDK 178 (436)
Q Consensus 99 ~~~~~~~v~~~i~~~l~~~~~aa~lLRLaFHDc~t~d~~~~~~~~~GGcDgSI~~~~E~~~~~N~GL~~~~~~i~~iK~~ 178 (436)
-..++.+|+++|++++++..++|.||||+||||++||... +.|||||+|++++|+++++|.||.+++++|++||++
T Consensus 9 ~~~~~~~V~~~v~~~~~~~~~~~~llRl~FHDc~~~d~s~----~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~ 84 (253)
T cd00691 9 AAKDLEAARNDIAKLIDDKNCAPILVRLAWHDSGTYDKET----KTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKK 84 (253)
T ss_pred cHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccc----CCCCCCccccchhhcCCccccchHHHHHHHHHHHHH
Confidence 3678999999999999966799999999999999999875 578999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhHHHHHHhCCCcccccCCCCCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHcCCChHHHHHhhccc
Q 013829 179 YSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAH 258 (436)
Q Consensus 179 ~~~VS~ADliaLAa~~AV~~~GGP~i~v~~GR~D~~~s~~~~~~g~LP~~~p~~~~~~l~~~F~~~Gls~~EmVALsGAH 258 (436)
++.||||||||||+++||+.||||.|+|++||+|+.++....++++||. |..+++++++.|+++||+++|||+|+|||
T Consensus 85 ~~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~--p~~~~~~l~~~F~~~Gls~~d~VaLsGaH 162 (253)
T cd00691 85 YPDISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPD--ASKGADHLRDVFYRMGFNDQEIVALSGAH 162 (253)
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCC--CCCCHHHHHHHHHhcCCCHHHHHHhcccc
Confidence 9999999999999999999999999999999999999987677889999 88999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCcccCCCCCCCCCCCccccccccchHHHHHHhhccC----CCcccccccccccCCcchHHHHHH
Q 013829 259 TVGRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKERRD----EDLLVLPTDAVLFEDPSFKVYAEK 334 (436)
Q Consensus 259 TIG~~h~~~sg~g~pd~~~~~~cP~~~~~~~~~~tp~~FDN~Yfk~Ll~~kg----~~~llL~SD~aL~~D~~t~~~V~~ 334 (436)
|||++||.++++.. +|+.||.+|||+||++|+.+++ +++++|+||++|+.|++|+.+|+.
T Consensus 163 TiG~a~c~~~~~~g----------------~~~~tp~~FDn~Yy~~ll~~~g~~~~~~~~~L~sD~~L~~d~~t~~~v~~ 226 (253)
T cd00691 163 TLGRCHKERSGYDG----------------PWTKNPLKFDNSYFKELLEEDWKLPTPGLLMLPTDKALLEDPKFRPYVEL 226 (253)
T ss_pred eeecccccCCCCCC----------------CCCCCCCcccHHHHHHHhcCCCccCcCcceechhhHHHHcCccHHHHHHH
Confidence 99999997643211 2457899999999999999998 678899999999999999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHcCCCCC
Q 013829 335 YAEDQEAFFKDYAEAHAKLSNLGAKF 360 (436)
Q Consensus 335 yA~dq~~Ff~dFa~Am~KMs~lgv~t 360 (436)
||.||++|+++|++||+||+++||++
T Consensus 227 ~a~~~~~F~~~Fa~Am~Km~~l~v~~ 252 (253)
T cd00691 227 YAKDQDAFFKDYAEAHKKLSELGVPF 252 (253)
T ss_pred HhhCHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999975
No 4
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=3.6e-65 Score=496.56 Aligned_cols=238 Identities=47% Similarity=0.849 Sum_probs=217.2
Q ss_pred CCChHHHHHHHHHHHHHHHcCCchhHHHHHHhhhccccCCCCCCCCCCCCCCccccchhhhhhhcccCcHHHHHHHHHHH
Q 013829 97 ASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIK 176 (436)
Q Consensus 97 a~~~~~~~~v~~~i~~~l~~~~~aa~lLRLaFHDc~t~d~~~~~~~~~GGcDgSI~~~~E~~~~~N~GL~~~~~~i~~iK 176 (436)
...+.+++.++++|++++.+..++|.||||+||||+|||... +.|||||||++++|+++++|.||.+++++|++||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~a~~~lRl~FHd~~t~dc~~----~~GG~dgSi~~~~E~~~~~N~gl~~~~~~i~~ik 85 (250)
T PLN02364 10 EDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQS----RTGGPFGTMRFDAEQAHGANSGIHIALRLLDPIR 85 (250)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHccccCcCcCC----CCCCCCccccccccccCCCccCHHHHHHHHHHHH
Confidence 334688999999999999888999999999999999999864 4689999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHhHHHHHHhCCCcccccCCCCCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHH-cCCChHHHHHhh
Q 013829 177 DKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYR-MGLNDKEIVALS 255 (436)
Q Consensus 177 ~~~~~VS~ADliaLAa~~AV~~~GGP~i~v~~GR~D~~~s~~~~~~g~LP~~~p~~~~~~l~~~F~~-~Gls~~EmVALs 255 (436)
++++.||||||||||+++||+++|||.|+|++||+|++++. ++++||. |..++++|++.|++ +||+++|||||+
T Consensus 86 ~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~lP~--p~~~~~~l~~~F~~~~Gl~~~d~VaLs 160 (250)
T PLN02364 86 EQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPP---PEGRLPD--ATKGCDHLRDVFAKQMGLSDKDIVALS 160 (250)
T ss_pred HHcCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCccccc---ccCCCCC--CCcCHHHHHHHHHHhcCCCHHHheeee
Confidence 99999999999999999999999999999999999999875 5678999 88999999999996 699999999999
Q ss_pred cccccccccCCCCCCCCCCCcccCCCCCCCCCCCccccccccchHHHHHHhhccCCCcccccccccccCCcchHHHHHHH
Q 013829 256 GAHTVGRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKERRDEDLLVLPTDAVLFEDPSFKVYAEKY 335 (436)
Q Consensus 256 GAHTIG~~h~~~sg~g~pd~~~~~~cP~~~~~~~~~~tp~~FDN~Yfk~Ll~~kg~~~llL~SD~aL~~D~~t~~~V~~y 335 (436)
||||||++||+|+++. .+|+.||.+|||+||++|+.+..++++.|+||++|+.|++|+.+|+.|
T Consensus 161 GaHTiG~~hc~r~~~~----------------g~~~~tp~~fDn~Yy~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~ 224 (250)
T PLN02364 161 GAHTLGRCHKDRSGFE----------------GAWTSNPLIFDNSYFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKY 224 (250)
T ss_pred cceeeccccCCCCCCC----------------CCCCCCCCccchHHHHHHhcCCcCCCccccchHHHccCchHHHHHHHH
Confidence 9999999999876431 135678999999999999998434466678999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHHcCCCC
Q 013829 336 AEDQEAFFKDYAEAHAKLSNLGAK 359 (436)
Q Consensus 336 A~dq~~Ff~dFa~Am~KMs~lgv~ 359 (436)
|.||+.|+++|++||+||+++|+.
T Consensus 225 a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 225 AADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred hhCHHHHHHHHHHHHHHHHccCCC
Confidence 999999999999999999999973
No 5
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.9e-65 Score=510.08 Aligned_cols=255 Identities=32% Similarity=0.477 Sum_probs=227.6
Q ss_pred CChHHHHHHHHHHHHHHHcC-CchhHHHHHHhhhccccCCCCCCCCCCCCCCccccch------hhhhhhcccCcHHHHH
Q 013829 98 SDPDQLKSAREDIRELLKST-FCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFE------VELKHAANAGLVNALK 170 (436)
Q Consensus 98 ~~~~~~~~v~~~i~~~l~~~-~~aa~lLRLaFHDc~t~d~~~~~~~~~GGcDgSI~~~------~E~~~~~N~GL~~~~~ 170 (436)
+.|+...+|+++|++.++.+ .++|+||||+||||++ +||||||+++ .|+++++|.|| ++|+
T Consensus 10 sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v-----------~GcDaSill~~~~~~~~E~~~~~N~~l-~g~~ 77 (298)
T cd00693 10 SCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFV-----------RGCDASVLLDSTANNTSEKDAPPNLSL-RGFD 77 (298)
T ss_pred CCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhc-----------cCcceeEEecCCCCCchhccCCCCCCc-chhH
Confidence 45778899999999998775 5899999999999996 8999999985 59999999998 7999
Q ss_pred HHHHHHHhC----C-CCCHHHHHHHHhHHHHHHhCCCcccccCCCCCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHcC
Q 013829 171 LIQPIKDKY----S-GVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMG 245 (436)
Q Consensus 171 ~i~~iK~~~----~-~VS~ADliaLAa~~AV~~~GGP~i~v~~GR~D~~~s~~~~~~g~LP~~~p~~~~~~l~~~F~~~G 245 (436)
+|+.||+.+ | .||||||||||+++||+.+|||.|+|++||+|+..+...++ ++||+ |..+++++++.|+++|
T Consensus 78 ~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~--p~~~~~~l~~~F~~~G 154 (298)
T cd00693 78 VIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPS--PFFSVSQLISLFASKG 154 (298)
T ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCC--cccCHHHHHHHHHHcC
Confidence 999999876 3 69999999999999999999999999999999987765544 78999 8899999999999999
Q ss_pred CChHHHHHhhcccccccccCC----C----CCCCCCCCcc--------cCCCCCCC---CCCCcc-ccccccchHHHHHH
Q 013829 246 LNDKEIVALSGAHTVGRSRPE----R----SGWGKPETKY--------TKDGPGAP---GGQSWT-VQWLKFDNSYFKDI 305 (436)
Q Consensus 246 ls~~EmVALsGAHTIG~~h~~----~----sg~g~pd~~~--------~~~cP~~~---~~~~~~-~tp~~FDN~Yfk~L 305 (436)
|+++|||||+||||||++||. | ++.+.+||.+ ++.||... ...++| .||.+|||+||++|
T Consensus 155 ~~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l 234 (298)
T cd00693 155 LTVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNL 234 (298)
T ss_pred CCHHHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHH
Confidence 999999999999999999994 3 1223455542 56898642 123456 79999999999999
Q ss_pred hhccCCCcccccccccccCCcchHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCCceecCC
Q 013829 306 KERRDEDLLVLPTDAVLFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSNLGAKFDPPEGIVLDDG 371 (436)
Q Consensus 306 l~~kg~~~llL~SD~aL~~D~~t~~~V~~yA~dq~~Ff~dFa~Am~KMs~lgv~tg~~~~i~l~~~ 371 (436)
+.+++ +|+||++|+.|++|+++|++||.||+.|+++|++||+||+++||+||.+|+||++|.
T Consensus 235 ~~~~g----lL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~ 296 (298)
T cd00693 235 LAGRG----LLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCR 296 (298)
T ss_pred Hhccc----CccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccc
Confidence 99998 999999999999999999999999999999999999999999999999999999996
No 6
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=4.3e-65 Score=509.99 Aligned_cols=255 Identities=23% Similarity=0.339 Sum_probs=224.6
Q ss_pred CChHHHHHHHHHHHHHHHcC-CchhHHHHHHhhhccccCCCCCCCCCCCCCCccccch---hhhhhhcccCcHHHHHHHH
Q 013829 98 SDPDQLKSAREDIRELLKST-FCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFE---VELKHAANAGLVNALKLIQ 173 (436)
Q Consensus 98 ~~~~~~~~v~~~i~~~l~~~-~~aa~lLRLaFHDc~t~d~~~~~~~~~GGcDgSI~~~---~E~~~~~N~GL~~~~~~i~ 173 (436)
+.|....+|++.|++.++.+ ..+|++|||+|||||+ +||||||+++ .|++.++|.+| ++|++|+
T Consensus 33 sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv-----------~GCDaSvLl~~~~~Ek~a~~N~~l-~Gf~~i~ 100 (324)
T PLN03030 33 TCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFV-----------RGCDASILIDGSNTEKTALPNLLL-RGYDVID 100 (324)
T ss_pred cCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhhee-----------cCCceEEeeCCCcccccCCCCcCc-chHHHHH
Confidence 34778889999999999775 5899999999999996 8999999996 69999999987 7999999
Q ss_pred HHHHhCC-----CCCHHHHHHHHhHHHHHHhCCCcccccCCCCCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHcCCCh
Q 013829 174 PIKDKYS-----GVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLND 248 (436)
Q Consensus 174 ~iK~~~~-----~VS~ADliaLAa~~AV~~~GGP~i~v~~GR~D~~~s~~~~~~g~LP~~~p~~~~~~l~~~F~~~Gls~ 248 (436)
.||..++ +||||||||||+|+||+++|||.|+|++||+|++++...++ ++||. |+.++++|++.|+++||+.
T Consensus 101 ~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~-~~LP~--p~~~~~~l~~~F~~~Gl~~ 177 (324)
T PLN03030 101 DAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDA-SNLPG--FTDSIDVQKQKFAAKGLNT 177 (324)
T ss_pred HHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccc-cCCcC--CCCCHHHHHHHHHHcCCCH
Confidence 9998874 69999999999999999999999999999999998876655 48999 8999999999999999999
Q ss_pred HHHHHhhcccccccccCCCCC--------CC-CCCCc----c----cCCCCCCCC---CCCcc-ccccccchHHHHHHhh
Q 013829 249 KEIVALSGAHTVGRSRPERSG--------WG-KPETK----Y----TKDGPGAPG---GQSWT-VQWLKFDNSYFKDIKE 307 (436)
Q Consensus 249 ~EmVALsGAHTIG~~h~~~sg--------~g-~pd~~----~----~~~cP~~~~---~~~~~-~tp~~FDN~Yfk~Ll~ 307 (436)
+|||+|+||||||++||..+. .+ .+||. | ++.||...+ ...++ .||.+|||+||++|++
T Consensus 178 ~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll~ 257 (324)
T PLN03030 178 QDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNLKN 257 (324)
T ss_pred HHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHHHh
Confidence 999999999999999996321 11 24543 3 568994211 12233 5899999999999999
Q ss_pred ccCCCcccccccccccCCcchHHHHHHHhhCH----HHHHHHHHHHHHHHHcCCCCCCCCCCceecCC
Q 013829 308 RRDEDLLVLPTDAVLFEDPSFKVYAEKYAEDQ----EAFFKDYAEAHAKLSNLGAKFDPPEGIVLDDG 371 (436)
Q Consensus 308 ~kg~~~llL~SD~aL~~D~~t~~~V~~yA~dq----~~Ff~dFa~Am~KMs~lgv~tg~~~~i~l~~~ 371 (436)
++| +|+||++|+.|++|+.+|++||.|+ +.|+++|++||+||+++||+||.+||||++|.
T Consensus 258 ~rG----lL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~ 321 (324)
T PLN03030 258 GRG----ILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCS 321 (324)
T ss_pred cCC----CcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceecccc
Confidence 999 9999999999999999999999875 59999999999999999999999999999986
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=6.4e-61 Score=481.33 Aligned_cols=268 Identities=25% Similarity=0.375 Sum_probs=225.3
Q ss_pred cCCCCChHHHHHHHHHHHHHHHc-CCc---hhHHHHHHhhhccccCCCC-CCCCCCCCCCccccch--hhhhhhcccCcH
Q 013829 94 KCAASDPDQLKSAREDIRELLKS-TFC---HPILVRLGWHDAGTYDKNI-EEWPRRGGANASLRFE--VELKHAANAGLV 166 (436)
Q Consensus 94 ~~~a~~~~~~~~v~~~i~~~l~~-~~~---aa~lLRLaFHDc~t~d~~~-~~~~~~GGcDgSI~~~--~E~~~~~N~GL~ 166 (436)
.|.+. ||.|..|+++|+++|.. +.| +++||||+||||++|++.. ..+.+.|||||||++. .|+++++|.||.
T Consensus 9 ~~~~~-cc~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~~E~~~~~N~gL~ 87 (328)
T cd00692 9 VCNAA-CCVWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDDIETAFHANIGLD 87 (328)
T ss_pred ccchh-hcchHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCcccccCCCCCCHH
Confidence 34444 99999999999999874 456 5669999999999999531 1124679999999875 589999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHhHHHHHHh-CCCcccccCCCCCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHcC
Q 013829 167 NALKLIQPIKDKYSGVTYADLFQLASATAIEEA-GGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMG 245 (436)
Q Consensus 167 ~~~~~i~~iK~~~~~VS~ADliaLAa~~AV~~~-GGP~i~v~~GR~D~~~s~~~~~~g~LP~~~p~~~~~~l~~~F~~~G 245 (436)
..++.|+++++++. ||||||||||+++||+.| |||.|+|++||+|++++. ++++||+ |..+++++++.|+++|
T Consensus 88 ~vvd~lk~~~e~~c-VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~---~~g~LP~--p~~sv~~l~~~F~~~G 161 (328)
T cd00692 88 EIVEALRPFHQKHN-VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPA---PDGLVPE--PFDSVDKILARFADAG 161 (328)
T ss_pred HHHHHHHHHHHhcC-cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCC---cccCCCC--CCCCHHHHHHHHHHcC
Confidence 88888888888886 999999999999999965 999999999999999875 6688999 8999999999999999
Q ss_pred CChHHHHHhhcccccccccCCCCCCCCCCCcccCCCCCCCCCCCccccccccchHHHHHHhhc-cC--------------
Q 013829 246 LNDKEIVALSGAHTVGRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKER-RD-------------- 310 (436)
Q Consensus 246 ls~~EmVALsGAHTIG~~h~~~sg~g~pd~~~~~~cP~~~~~~~~~~tp~~FDN~Yfk~Ll~~-kg-------------- 310 (436)
|+++|||+|+||||||++|.. |+.+ + +.+|+.||.+|||+||+|++.+ ++
T Consensus 162 f~~~E~VaLsGAHTiG~a~~~-------Dps~----~----g~p~D~TP~~FDn~Yf~~ll~~~~~~~g~~~~~~e~~~~ 226 (328)
T cd00692 162 FSPDELVALLAAHSVAAQDFV-------DPSI----A----GTPFDSTPGVFDTQFFIETLLKGTAFPGSGGNQGEVESP 226 (328)
T ss_pred CCHHHHhhhcccccccccCCC-------CCCC----C----CCCCCCCcchhcHHHHHHHHHcCCCCCCccccccccccC
Confidence 999999999999999999842 3222 1 2368899999999999998853 32
Q ss_pred -CCcccccccccccCCcchHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCCceecCC---CCcchhh-hccCCCC
Q 013829 311 -EDLLVLPTDAVLFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSNLGAKFDPPEGIVLDDG---AAPEKFV-AAKYSSG 385 (436)
Q Consensus 311 -~~~llL~SD~aL~~D~~t~~~V~~yA~dq~~Ff~dFa~Am~KMs~lgv~tg~~~~i~l~~~---~~~~~~~-a~~~~~~ 385 (436)
+++++|+||++|+.|++|+.+|++||.||++|+++|++||+||+++||. .....+|+ ..|..+. ...+|.+
T Consensus 227 ~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~~l~dcs~v~p~~~~~~~~~~~p~~ 302 (328)
T cd00692 227 LPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD----NISLTDCSDVIPPPKPLSQDPTFPAG 302 (328)
T ss_pred ccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC----cchhccCcccCCCCCCCCCCCcCCCC
Confidence 2567899999999999999999999999999999999999999999974 44777888 3334443 3457777
Q ss_pred ch
Q 013829 386 KS 387 (436)
Q Consensus 386 k~ 387 (436)
++
T Consensus 303 ~~ 304 (328)
T cd00692 303 LT 304 (328)
T ss_pred CC
Confidence 65
No 8
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=3.4e-61 Score=491.13 Aligned_cols=284 Identities=31% Similarity=0.495 Sum_probs=244.6
Q ss_pred CccccccccCccccccccccccCCCCCCcccCCCCChHHHHHHHHHHHHHHHcC---------CchhHHHHHHhhhcccc
Q 013829 64 PSSLKCLRFSPLISQRRSSVNRGYSTVPTTKCAASDPDQLKSAREDIRELLKST---------FCHPILVRLGWHDAGTY 134 (436)
Q Consensus 64 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~v~~~i~~~l~~~---------~~aa~lLRLaFHDc~t~ 134 (436)
.++|+.||+|...++|.|. .|++ ..+...-+++.|+++|+++|++. .|+|.+|||+|||++||
T Consensus 13 ~~~~~~l~~~~~~~~p~~~---~~~~-----~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy 84 (409)
T cd00649 13 RLNLKILHQHSPKSNPMGE---DFNY-----AEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTY 84 (409)
T ss_pred ccCchhhccCCCCCCCCCC---CCCH-----HHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccc
Confidence 6899999999999999885 7877 55566778899999999999864 59999999999999999
Q ss_pred CCCCCCCCCCCCCC-ccccchhhhhhhcccCcHHHHHHHHHHHHhCC-CCCHHHHHHHHhHHHHHHhCCCcccccCCCCC
Q 013829 135 DKNIEEWPRRGGAN-ASLRFEVELKHAANAGLVNALKLIQPIKDKYS-GVTYADLFQLASATAIEEAGGPKIPMKYGRVD 212 (436)
Q Consensus 135 d~~~~~~~~~GGcD-gSI~~~~E~~~~~N~GL~~~~~~i~~iK~~~~-~VS~ADliaLAa~~AV~~~GGP~i~v~~GR~D 212 (436)
|+.+ ++||+| |+|||++|.+|+.|.||.+++++|++||++|+ .||+||||+|||++|||.||||.|+|++||.|
T Consensus 85 ~~~d----~~GG~ngg~iRf~pe~~~~~N~gL~~a~~~L~pik~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~D 160 (409)
T cd00649 85 RIAD----GRGGAGTGQQRFAPLNSWPDNVNLDKARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGRED 160 (409)
T ss_pred cCcC----CCCCCCCCccccccccCcHhhhhHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCc
Confidence 9986 589997 79999999999999999999999999999997 69999999999999999999999999999999
Q ss_pred CCCCCC-----------------------------------CCccC--CCCCCCCCCCHHHHHHHHHHcCCChHHHHHhh
Q 013829 213 VSGPEQ-----------------------------------CPEEG--RLPAAGPPSPAEHLRNVFYRMGLNDKEIVALS 255 (436)
Q Consensus 213 ~~~s~~-----------------------------------~~~~g--~LP~~~p~~~~~~l~~~F~~~Gls~~EmVALs 255 (436)
+..+.. +.++| .||+ |..++.+|++.|++||||++|||||+
T Consensus 161 a~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~mgliyv~Pegp~gLPd--P~~sa~~LR~~F~RmGlnd~E~VAL~ 238 (409)
T cd00649 161 VWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQMGLIYVNPEGPDGNPD--PLAAAKDIRETFARMAMNDEETVALI 238 (409)
T ss_pred cCCCccccccCcchhcccccccccchhhccchhhhhccccccCCCCCCCCCC--CccCHHHHHHHHHHcCCCHHHHeeec
Confidence 976532 12344 6888 88999999999999999999999995
Q ss_pred -cccccccccCCCCCC-CCCCCc----------ccCCCCCCCC--------CCCccccccccchHHHHHHhhcc------
Q 013829 256 -GAHTVGRSRPERSGW-GKPETK----------YTKDGPGAPG--------GQSWTVQWLKFDNSYFKDIKERR------ 309 (436)
Q Consensus 256 -GAHTIG~~h~~~sg~-g~pd~~----------~~~~cP~~~~--------~~~~~~tp~~FDN~Yfk~Ll~~k------ 309 (436)
||||||++||..+.. -.+||. ++..||...+ +.+|+.+|++|||+||++|++.+
T Consensus 239 sGAHTiGkaHc~~~~~rlg~dP~~~~~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~ 318 (409)
T cd00649 239 AGGHTFGKTHGAGPASHVGPEPEAAPIEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKS 318 (409)
T ss_pred cCCcceeecCcccccccCCCCCCcCHHHHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccC
Confidence 999999999964321 113332 2357885211 23678899999999999999832
Q ss_pred --------------------------CCCcccccccccccCCcchHHHHHHHhhCHHHHHHHHHHHHHHH--HcCCCCCC
Q 013829 310 --------------------------DEDLLVLPTDAVLFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKL--SNLGAKFD 361 (436)
Q Consensus 310 --------------------------g~~~llL~SD~aL~~D~~t~~~V~~yA~dq~~Ff~dFa~Am~KM--s~lgv~tg 361 (436)
...++||+||++|+.|++++++|++||.||++||++|++||+|| .++|+++-
T Consensus 319 p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~ 398 (409)
T cd00649 319 PAGAWQWVPKNAAGENTVPDAHDPSKKHAPMMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSR 398 (409)
T ss_pred CCCcccccccCccccccCCCccccccccCcccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhh
Confidence 12567999999999999999999999999999999999999999 58998763
No 9
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2.3e-56 Score=478.49 Aligned_cols=316 Identities=30% Similarity=0.482 Sum_probs=257.2
Q ss_pred CccccccccCccccccccccccCCCCCCcccCCCCChHHHHHHHHHHHHHHHcC---------CchhHHHHHHhhhcccc
Q 013829 64 PSSLKCLRFSPLISQRRSSVNRGYSTVPTTKCAASDPDQLKSAREDIRELLKST---------FCHPILVRLGWHDAGTY 134 (436)
Q Consensus 64 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~v~~~i~~~l~~~---------~~aa~lLRLaFHDc~t~ 134 (436)
.++|++||+|+..++|.|. +|++ ..+...-+++.|+++|++++++. .++|.+|||+||+++||
T Consensus 25 ~l~l~~l~~~~~~~~p~~~---~f~y-----~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTY 96 (726)
T PRK15061 25 QLNLDILHQHSSKSNPMGE---DFDY-----AEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTY 96 (726)
T ss_pred ccCchhhccCCCCCCCCCC---CCCH-----HHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccc
Confidence 6899999999999999985 7888 55666788999999999999864 58999999999999999
Q ss_pred CCCCCCCCCCCCCC-ccccchhhhhhhcccCcHHHHHHHHHHHHhCC-CCCHHHHHHHHhHHHHHHhCCCcccccCCCCC
Q 013829 135 DKNIEEWPRRGGAN-ASLRFEVELKHAANAGLVNALKLIQPIKDKYS-GVTYADLFQLASATAIEEAGGPKIPMKYGRVD 212 (436)
Q Consensus 135 d~~~~~~~~~GGcD-gSI~~~~E~~~~~N~GL~~~~~~i~~iK~~~~-~VS~ADliaLAa~~AV~~~GGP~i~v~~GR~D 212 (436)
|..+ ++|||+ |+|||++|.+|+.|.||.+++++|++||.+|+ .||+||||+||+++|||.||||.|+|.+||.|
T Consensus 97 r~~d----~rGGangg~iRf~pe~~w~~N~gL~ka~~~L~pik~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D 172 (726)
T PRK15061 97 RIGD----GRGGAGGGQQRFAPLNSWPDNVNLDKARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGRED 172 (726)
T ss_pred cCcC----CCCCCCCCcccCcccccchhhhhHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCC
Confidence 9986 689997 79999999999999999999999999999997 79999999999999999999999999999999
Q ss_pred CCCCCCC------------------------------------CccC--CCCCCCCCCCHHHHHHHHHHcCCChHHHHHh
Q 013829 213 VSGPEQC------------------------------------PEEG--RLPAAGPPSPAEHLRNVFYRMGLNDKEIVAL 254 (436)
Q Consensus 213 ~~~s~~~------------------------------------~~~g--~LP~~~p~~~~~~l~~~F~~~Gls~~EmVAL 254 (436)
...+..+ .|+| .+|+ |..++.+|++.|.+||||++|||||
T Consensus 173 ~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~~mgliyvnpegp~glPd--P~~sa~~lR~tF~RMGmnDeEtVAL 250 (726)
T PRK15061 173 VWEPEEDVYWGPEKEWLGGDERYSGERDLENPLAAVQMGLIYVNPEGPNGNPD--PLAAARDIRETFARMAMNDEETVAL 250 (726)
T ss_pred CcCCccccccCccccccccccccccccccccchhhhhccceecCCCCCCCCCC--cccCHHHHHHHHHHcCCCHHHheee
Confidence 9765431 0111 2566 7788999999999999999999999
Q ss_pred h-cccccccccCCCCCC-CCCCCc----------ccCCCCCCCC--------CCCccccccccchHHHHHHhhcc-----
Q 013829 255 S-GAHTVGRSRPERSGW-GKPETK----------YTKDGPGAPG--------GQSWTVQWLKFDNSYFKDIKERR----- 309 (436)
Q Consensus 255 s-GAHTIG~~h~~~sg~-g~pd~~----------~~~~cP~~~~--------~~~~~~tp~~FDN~Yfk~Ll~~k----- 309 (436)
+ ||||||++||..+.. -.|||. +...||...+ +.+|+.||++|||+||++|+.+.
T Consensus 251 iaGgHT~GkaHca~~~~rlgpdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~ 330 (726)
T PRK15061 251 IAGGHTFGKTHGAGDASHVGPEPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTK 330 (726)
T ss_pred ccCCceeeeCCCcCcccccCCCCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceecc
Confidence 6 999999999964321 124543 2457875211 23688999999999999999852
Q ss_pred ---------------------------CCCcccccccccccCCcchHHHHHHHhhCHHHHHHHHHHHHHHHH--cCCCCC
Q 013829 310 ---------------------------DEDLLVLPTDAVLFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLS--NLGAKF 360 (436)
Q Consensus 310 ---------------------------g~~~llL~SD~aL~~D~~t~~~V~~yA~dq~~Ff~dFa~Am~KMs--~lgv~t 360 (436)
...++||+||++|..||.++++|++||.||++|+++|++||.||. ++|++.
T Consensus 331 sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ 410 (726)
T PRK15061 331 SPAGAWQWVPKDGAAEDTVPDAHDPSKKHAPTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKS 410 (726)
T ss_pred CCCccccccccCccccccCCcccccccccCcccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchh
Confidence 013689999999999999999999999999999999999999994 477553
Q ss_pred ---C---CCCCceecCCCCcchhhhccCCC-CchhhhHHHHHHHHH
Q 013829 361 ---D---PPEGIVLDDGAAPEKFVAAKYSS-GKSELSEAMKQKIRA 399 (436)
Q Consensus 361 ---g---~~~~i~l~~~~~~~~~~a~~~~~-~k~e~s~~~~~~~~~ 399 (436)
| +.+..+.++||.+ ..+.. ...++ .+.|++|.+
T Consensus 411 ry~g~~vp~e~~~wqdp~p~-----~~~~~~~~~di-~~lk~~i~~ 450 (726)
T PRK15061 411 RYLGPEVPKEDLIWQDPVPA-----VDHELIDDADI-AALKAKILA 450 (726)
T ss_pred hhcCCCCCcccccccCCCCC-----CCcccCCHHHH-HHHHHHHHh
Confidence 2 2334456665332 12222 23344 467777765
No 10
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.6e-56 Score=482.02 Aligned_cols=315 Identities=29% Similarity=0.487 Sum_probs=258.2
Q ss_pred CccccccccCccccccccccccCCCCCCcccCCCCChHHHHHHHHHHHHHHHcC---------CchhHHHHHHhhhcccc
Q 013829 64 PSSLKCLRFSPLISQRRSSVNRGYSTVPTTKCAASDPDQLKSAREDIRELLKST---------FCHPILVRLGWHDAGTY 134 (436)
Q Consensus 64 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~v~~~i~~~l~~~---------~~aa~lLRLaFHDc~t~ 134 (436)
.++|++||||...++|.|. +|++ ..+...-+++.|+++|++++++. .++|.+|||+||+++||
T Consensus 23 ~l~~~~l~~~~~~~~p~~~---~f~y-----~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTY 94 (716)
T TIGR00198 23 ALNLDILHQHDRKTNPMGE---DFDY-----AEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTY 94 (716)
T ss_pred ccCchhhccCCCCCCCCCC---CccH-----HHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccc
Confidence 6899999999999999885 7888 55556677889999999999874 58999999999999999
Q ss_pred CCCCCCCCCCCCCC-ccccchhhhhhhcccCcHHHHHHHHHHHHhCC-CCCHHHHHHHHhHHHHHHhCCCcccccCCCCC
Q 013829 135 DKNIEEWPRRGGAN-ASLRFEVELKHAANAGLVNALKLIQPIKDKYS-GVTYADLFQLASATAIEEAGGPKIPMKYGRVD 212 (436)
Q Consensus 135 d~~~~~~~~~GGcD-gSI~~~~E~~~~~N~GL~~~~~~i~~iK~~~~-~VS~ADliaLAa~~AV~~~GGP~i~v~~GR~D 212 (436)
+..+ ++|||+ |+|||++|.+|++|.||.+++++|++||++|+ .|||||||+|||++|||.+|||.|+|.+||+|
T Consensus 95 r~~d----~rGGa~gg~iRf~P~~sw~~N~~Ldka~~lL~pIk~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D 170 (716)
T TIGR00198 95 RIAD----GRGGAATGNQRFAPLNSWPDNVNLDKARRLLWPIKKKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGRED 170 (716)
T ss_pred cCCC----CCCCCCCCceecccccCchhhhhHHHHHHHHHHHHHHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCC
Confidence 9875 689995 79999999999999999999999999999998 69999999999999999999999999999999
Q ss_pred CCCCCC----------------------------------CCccC--CCCCCCCCCCHHHHHHHHHHcCCChHHHHHhh-
Q 013829 213 VSGPEQ----------------------------------CPEEG--RLPAAGPPSPAEHLRNVFYRMGLNDKEIVALS- 255 (436)
Q Consensus 213 ~~~s~~----------------------------------~~~~g--~LP~~~p~~~~~~l~~~F~~~Gls~~EmVALs- 255 (436)
+..+.. ..+++ .+|+ |..++.+|++.|.+||||++|||||+
T Consensus 171 ~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~Gliyvnpeg~~~lPd--P~~sa~~Lrd~F~rmGLnd~EmVALia 248 (716)
T TIGR00198 171 IWEPDKDIYWGAEKEWLTSSREDRESLENPLAATEMGLIYVNPEGPDGHPD--PLCTAQDIRTTFARMGMNDEETVALIA 248 (716)
T ss_pred CCCcccccccccccchhhccccccccccccchhhhccccccCcccccCCCC--CCCCHHHHHHHHHHcCCChHHHeeeec
Confidence 954421 01122 5788 78899999999999999999999996
Q ss_pred cccccccccCCCCC--CCCCCCc--------ccCCCCCCCC----------CCCccccccccchHHHHHHhhcc------
Q 013829 256 GAHTVGRSRPERSG--WGKPETK--------YTKDGPGAPG----------GQSWTVQWLKFDNSYFKDIKERR------ 309 (436)
Q Consensus 256 GAHTIG~~h~~~sg--~g~pd~~--------~~~~cP~~~~----------~~~~~~tp~~FDN~Yfk~Ll~~k------ 309 (436)
||||||++||.... .+ +||. +...||...+ +..|+.||.+|||+||++|++..
T Consensus 249 GaHTiGkaHc~s~~~rlg-~dP~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s 327 (716)
T TIGR00198 249 GGHTVGKCHGAGPAELIG-PDPEGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKS 327 (716)
T ss_pred CceeccccCCCcccccCC-CCCCcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeec
Confidence 99999999996321 12 4543 2345653111 13578999999999999999751
Q ss_pred ------------------------CCCcccccccccccCCcchHHHHHHHhhCHHHHHHHHHHHHHHHH--cCCCCC---
Q 013829 310 ------------------------DEDLLVLPTDAVLFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLS--NLGAKF--- 360 (436)
Q Consensus 310 ------------------------g~~~llL~SD~aL~~D~~t~~~V~~yA~dq~~Ff~dFa~Am~KMs--~lgv~t--- 360 (436)
....++|+||++|..|++++++|+.||.|++.|+++|++||+||+ ++|++.
T Consensus 328 ~~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~~y~ 407 (716)
T TIGR00198 328 PAGAWQWEAVDAPEIIPDVEDPNKKHNPIMLDADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKSRYI 407 (716)
T ss_pred CCCCceeeecccccccccccccccccccCccchhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchhhhc
Confidence 013678999999999999999999999999999999999999999 567552
Q ss_pred --CC-CCCceecCCCCcchhhhccCCCCchhhhHHHHHHHHH
Q 013829 361 --DP-PEGIVLDDGAAPEKFVAAKYSSGKSELSEAMKQKIRA 399 (436)
Q Consensus 361 --g~-~~~i~l~~~~~~~~~~a~~~~~~k~e~s~~~~~~~~~ 399 (436)
.+ .+..+.++||.+.. |..-+.++. +.|.+|.+
T Consensus 408 g~~vp~~~~~wqdp~p~~~-----~~~v~~di~-~lk~~i~~ 443 (716)
T TIGR00198 408 GPDVPQEDLIWQDPLPPVD-----YTLSEGDIK-ELKQQILA 443 (716)
T ss_pred CCCCCcccccccCCCCCCC-----chhHHHHHH-HHHHHHHh
Confidence 23 34457887754442 333356674 57777766
No 11
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=2.2e-55 Score=427.99 Aligned_cols=232 Identities=41% Similarity=0.692 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHc-CCchhHHHHHHhhhccccCCCCCCCCCCCCCCccccchhhhhhhcccCcHHHHHHHHHHHHhCC---
Q 013829 105 SAREDIRELLKS-TFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYS--- 180 (436)
Q Consensus 105 ~v~~~i~~~l~~-~~~aa~lLRLaFHDc~t~d~~~~~~~~~GGcDgSI~~~~E~~~~~N~GL~~~~~~i~~iK~~~~--- 180 (436)
.|+++|++.+.. ..+++.+|||+||||+||+..+. +.|||||||++++|+++++|.||.+++++|++||.+++
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~---~~gg~dgsi~~~~e~~~~~N~~l~~~~~~l~~ik~~~~~~~ 78 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADG---KGGGADGSIRFEPELDRPENGGLDKALRALEPIKSAYDGGN 78 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCC---CCCCCCceEeccccccCcccccHHHHHHHHHHHHHHcCCCC
Confidence 477888888866 46899999999999999998763 57999999999999999999999999999999999997
Q ss_pred CCCHHHHHHHHhHHHHHHh--CCCcccccCCCCCCCCCC--CCCccCCCCCCCCCCCHHHHHHHHHHcCCChHHHHHhh-
Q 013829 181 GVTYADLFQLASATAIEEA--GGPKIPMKYGRVDVSGPE--QCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALS- 255 (436)
Q Consensus 181 ~VS~ADliaLAa~~AV~~~--GGP~i~v~~GR~D~~~s~--~~~~~g~LP~~~p~~~~~~l~~~F~~~Gls~~EmVALs- 255 (436)
.|||||||+||+++||+.+ |||.|+|++||+|++.+. ...|.+++|. +..+++++++.|.++||+++|||||+
T Consensus 79 ~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~--~~~~~~~~~~~F~~~Gl~~~e~VAL~~ 156 (255)
T cd00314 79 PVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPN--ETSSATELRDKFKRMGLSPSELVALSA 156 (255)
T ss_pred cccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCC--ccchHHHHHHHHHHcCCCHHHHHhhcc
Confidence 6999999999999999999 999999999999998653 3346677887 77889999999999999999999999
Q ss_pred ccccc-ccccCCCCCCCCCCCcccCCCCCCCCCCCccccccccchHHHHHHhhccC------------CCcccccccccc
Q 013829 256 GAHTV-GRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKERRD------------EDLLVLPTDAVL 322 (436)
Q Consensus 256 GAHTI-G~~h~~~sg~g~pd~~~~~~cP~~~~~~~~~~tp~~FDN~Yfk~Ll~~kg------------~~~llL~SD~aL 322 (436)
||||| |++||..++.. .| ..|+.||.+|||+||++|+.++. ..+.+|+||++|
T Consensus 157 GaHti~G~~~~~~~~~~--------~~------~~~~~tp~~fDN~yy~~l~~~~~~~~~~~~~~~~~~~~~~l~sD~~L 222 (255)
T cd00314 157 GAHTLGGKNHGDLLNYE--------GS------GLWTSTPFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPGLLPSDYAL 222 (255)
T ss_pred CCeeccCcccCCCCCcc--------cC------CCCCCCCCccchHHHHHHhcCCcccccCCccCCCcccCCCchhhHHH
Confidence 99999 99999753221 02 24778999999999999999872 234599999999
Q ss_pred cCCcchHHHHHHHhhCHHHHHHHHHHHHHHHHc
Q 013829 323 FEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSN 355 (436)
Q Consensus 323 ~~D~~t~~~V~~yA~dq~~Ff~dFa~Am~KMs~ 355 (436)
+.|++|+.+|+.||.|+++|+++|++||+||++
T Consensus 223 ~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 223 LSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred hcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999975
No 12
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=7e-55 Score=424.53 Aligned_cols=240 Identities=23% Similarity=0.354 Sum_probs=202.5
Q ss_pred ccccccccCCCCCCcccCCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHhhhccccCCCCCCCCCCCCCCccccchhhh
Q 013829 78 QRRSSVNRGYSTVPTTKCAASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVEL 157 (436)
Q Consensus 78 ~~~~~~~~~~~~~~~p~~~a~~~~~~~~v~~~i~~~l~~~~~aa~lLRLaFHDc~t~d~~~~~~~~~GGcDgSI~~~~E~ 157 (436)
+..|+.+++|+++|+||++...... ...+++||||+||||+|||+.+ ++|||||||++ |.
T Consensus 14 ~~~g~~~~~f~~~v~~c~~~~~~~~--------------~~~aa~~LRL~FHDc~t~~~~~----g~gGcDgSIll--e~ 73 (264)
T cd08201 14 LQSGYSARGFVAGVTPCTDCAPGPG--------------RQAAAEWLRTAFHDMATHNVDD----GTGGLDASIQY--EL 73 (264)
T ss_pred hcccceecccccccccccccCcCCC--------------ccHHHHHHHHHHHhhcCcccCC----CCCCCCcceee--cC
Confidence 5678889999999999987654432 3578999999999999999985 68999999999 47
Q ss_pred hhhcccCcH--HHHHHHHHHHHhCCCCCHHHHHHHHhHHHHHHhCCCcccccCCCCCCCCCCCCCccCCCCCCCCCCCHH
Q 013829 158 KHAANAGLV--NALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAE 235 (436)
Q Consensus 158 ~~~~N~GL~--~~~~~i~~iK~~~~~VS~ADliaLAa~~AV~~~GGP~i~v~~GR~D~~~s~~~~~~g~LP~~~p~~~~~ 235 (436)
.++||.|+. ..++.++.|+. +.||||||||||+++||+.||||.|+|++||+|++++. +++ ||+ |..+++
T Consensus 74 ~~~En~G~~~n~~l~~~~~i~~--~~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~---~~g-lP~--P~~~v~ 145 (264)
T cd08201 74 DRPENIGSGFNTTLNFFVNFYS--PRSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAG---QAG-VPE--PQTDLG 145 (264)
T ss_pred CChhhccCchhhccccceeecc--CccCHHHHHHHHHHHHHHHcCCCeecccccCCCccccc---ccc-CCC--CccCHH
Confidence 789999886 45666666643 37999999999999999999999999999999999876 345 999 899999
Q ss_pred HHHHHHHHcCCChHHHHHhhc-ccccccccCCCCCCCCCCCcccCCCCCCC--CCCCccccccccchHHHHHHhhccCCC
Q 013829 236 HLRNVFYRMGLNDKEIVALSG-AHTVGRSRPERSGWGKPETKYTKDGPGAP--GGQSWTVQWLKFDNSYFKDIKERRDED 312 (436)
Q Consensus 236 ~l~~~F~~~Gls~~EmVALsG-AHTIG~~h~~~sg~g~pd~~~~~~cP~~~--~~~~~~~tp~~FDN~Yfk~Ll~~kg~~ 312 (436)
+|++.|++|||+++|||+|+| |||||++||.+++... .|+.. ++.+|+.||.+|||+||.|++++.+++
T Consensus 146 ~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~--------~~g~~~~~~~p~dstp~~FDn~~f~E~l~g~~~~ 217 (264)
T cd08201 146 TTTESFRRQGFSTSEMIALVACGHTLGGVHSEDFPEIV--------PPGSVPDTVLQFFDTTIQFDNKVVTEYLSGTTNN 217 (264)
T ss_pred HHHHHHHHcCCChHHHheeecCCeeeeecccccchhhc--------CCccccCCCCCCCCCccccchHHHHHHhcCCCCC
Confidence 999999999999999999995 9999999998653211 12211 345799999999999999999998888
Q ss_pred ccc------ccccccccCCcchHHHHHHHhhCHHHHHHHHHHHHHHHHc
Q 013829 313 LLV------LPTDAVLFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSN 355 (436)
Q Consensus 313 ~ll------L~SD~aL~~D~~t~~~V~~yA~dq~~Ff~dFa~Am~KMs~ 355 (436)
+|+ +.||..+|..+ -...++.+| |++.|.+.|+..++||++
T Consensus 218 ~L~~~~~~~~~sd~r~f~~d-~n~t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 218 PLVVGPNNTTNSDLRIFSSD-GNVTMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred ceeecCCCCccchhhheecC-ccHHHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 876 68899999865 345567787 899999999999999985
No 13
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=9.8e-56 Score=426.12 Aligned_cols=215 Identities=36% Similarity=0.614 Sum_probs=180.1
Q ss_pred HHHHHHHHHHc-CCchhHHHHHHhhhccccCCCCCCCCCCCCCCccccc-hhhhhhhcccCcHHHHHHHHHHHHhCC---
Q 013829 106 AREDIRELLKS-TFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRF-EVELKHAANAGLVNALKLIQPIKDKYS--- 180 (436)
Q Consensus 106 v~~~i~~~l~~-~~~aa~lLRLaFHDc~t~d~~~~~~~~~GGcDgSI~~-~~E~~~~~N~GL~~~~~~i~~iK~~~~--- 180 (436)
||++|+++++. ..++|+||||+||||++| |||||||++ ..|+++++|.||.+++++|++||++++
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~----------~GcDgSil~~~~e~~~~~N~gl~~~~~~i~~ik~~~~~~c 70 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVY----------GGCDGSILLFSAEKDAPPNRGLRDGFDVIDPIKAKLEAAC 70 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTH----------TSSSSGGGGSTTGGGSGGGTTHHHHHHHHHHHHHHHCHHS
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccc----------cccccceeccccccccccccCcceeeechhhHHhhhcccc
Confidence 78999999987 569999999999999964 799999976 789999999999889999999999986
Q ss_pred --CCCHHHHHHHHhHHHHHHhCCCcccccCCCCCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHcCCChHHHHHhhccc
Q 013829 181 --GVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAH 258 (436)
Q Consensus 181 --~VS~ADliaLAa~~AV~~~GGP~i~v~~GR~D~~~s~~~~~~g~LP~~~p~~~~~~l~~~F~~~Gls~~EmVALsGAH 258 (436)
.|||||||+||+++||+.+|||.|+|++||+|+.++....+ .+||. |..++++|++.|+++||+++|||||+|||
T Consensus 71 p~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~--p~~~~~~l~~~F~~~Gls~~e~VaLsGaH 147 (230)
T PF00141_consen 71 PGVVSCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPS--PTDSVDQLLAFFARKGLSAEEMVALSGAH 147 (230)
T ss_dssp TTTS-HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSST--TTSHHHHHHHHHHHTT--HHHHHHHHGGG
T ss_pred cCCCCHHHHHHHHhhhccccccccccccccccccccccccccc-ccccc--cccccchhhhhhhccccchhhhcceeccc
Confidence 49999999999999999999999999999999999976444 56998 88999999999999999999999999999
Q ss_pred ccccccCCCCC--CCCCCC----ccc-CCCCCCC-CCCCccccccccchHHHHHHhhccCCCcccccccccccCCcchHH
Q 013829 259 TVGRSRPERSG--WGKPET----KYT-KDGPGAP-GGQSWTVQWLKFDNSYFKDIKERRDEDLLVLPTDAVLFEDPSFKV 330 (436)
Q Consensus 259 TIG~~h~~~sg--~g~pd~----~~~-~~cP~~~-~~~~~~~tp~~FDN~Yfk~Ll~~kg~~~llL~SD~aL~~D~~t~~ 330 (436)
|||++||..+. +..+|| .|. ..|+..+ ...+++ ||.+|||+||++++++++ +|+||++|+.|++|+.
T Consensus 148 TiG~~~c~~f~rl~~~~dp~~d~~~~~~~C~~~~~~~~~~d-tp~~fDN~Yy~~ll~~~g----ll~SD~~L~~d~~t~~ 222 (230)
T PF00141_consen 148 TIGRAHCSSFSRLYFPPDPTMDPGYAGQNCNSGGDNGVPLD-TPTVFDNSYYKNLLNGRG----LLPSDQALLNDPETRP 222 (230)
T ss_dssp GSTEESGGCTGGTSCSSGTTSTHHHHHHSSSTSGCTCEESS-STTS-SSHHHHHHHHTEE----EEHHHHHHHHSTTHHH
T ss_pred ccccceeccccccccccccccccccceeccCCCcccccccc-CCCcchhHHHHHHhcCCC----cCHHHHHHhcCHHHHH
Confidence 99999996322 012333 342 2573211 122456 999999999999999998 9999999999999999
Q ss_pred HHHHHhhC
Q 013829 331 YAEKYAED 338 (436)
Q Consensus 331 ~V~~yA~d 338 (436)
+|++||.|
T Consensus 223 ~V~~yA~d 230 (230)
T PF00141_consen 223 IVERYAQD 230 (230)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhcC
Confidence 99999976
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=3.3e-48 Score=382.11 Aligned_cols=222 Identities=28% Similarity=0.416 Sum_probs=189.9
Q ss_pred HHHcCCchhHHHHHHhhhccccCCCCCCCCCCCCCCcc-ccchhhhhhhcccC--cHHHHHHHHHHHHhCC-------CC
Q 013829 113 LLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANAS-LRFEVELKHAANAG--LVNALKLIQPIKDKYS-------GV 182 (436)
Q Consensus 113 ~l~~~~~aa~lLRLaFHDc~t~d~~~~~~~~~GGcDgS-I~~~~E~~~~~N~G--L~~~~~~i~~iK~~~~-------~V 182 (436)
++..+.+.+.+|||+||+++||+..+ ++||+||+ |||++|++|+.|.+ |.+++++|++||.+|+ .|
T Consensus 23 i~~~gl~~~~lvrlAWhsAgTyr~sd----~rGGaNGariRl~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~~~~~~~~v 98 (297)
T cd08200 23 ILASGLTVSELVSTAWASASTFRNSD----KRGGANGARIRLAPQKDWEVNEPEELAKVLAVLEGIQKEFNESQSGGKKV 98 (297)
T ss_pred HHhcCCcHHHHHHHhhhccccccCCC----CCCCCCcccccCccccCcCccCcHHHHHHHHHHHHHHHHhcccccCCccc
Confidence 44566899999999999999999985 68999997 99999999999999 9999999999999997 79
Q ss_pred CHHHHHHHHhHHHHHHhCC-----CcccccCCCCCCCCCCCCCcc---CCCCCCC----------CCCCHHHHHHHHHHc
Q 013829 183 TYADLFQLASATAIEEAGG-----PKIPMKYGRVDVSGPEQCPEE---GRLPAAG----------PPSPAEHLRNVFYRM 244 (436)
Q Consensus 183 S~ADliaLAa~~AV~~~GG-----P~i~v~~GR~D~~~s~~~~~~---g~LP~~~----------p~~~~~~l~~~F~~~ 244 (436)
|+||||+|||++|||.+|| |.|||++||.|++.+. ++++ .++|.+. +..+.++|++.|.+|
T Consensus 99 S~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~-td~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd~f~rl 177 (297)
T cd08200 99 SLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQ-TDVESFEVLEPKADGFRNYLKKGYRVPPEEMLVDKAQLL 177 (297)
T ss_pred cHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCC-CCcccccccCCCCcccccccccCCCCCHHHHHHHHHHhC
Confidence 9999999999999999999 9999999999998753 3332 2345321 123567899999999
Q ss_pred CCChHHHHHhhccc-ccccccCCCCCCCCCCCcccCCCCCCCCCCCccccccccchHHHHHHhhcc--------------
Q 013829 245 GLNDKEIVALSGAH-TVGRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKERR-------------- 309 (436)
Q Consensus 245 Gls~~EmVALsGAH-TIG~~h~~~sg~g~pd~~~~~~cP~~~~~~~~~~tp~~FDN~Yfk~Ll~~k-------------- 309 (436)
|||++|||||+||| ++|++|. +++.| .||.+|.+|||.||++|++-.
T Consensus 178 glsd~EmvaL~Gg~r~lG~~~~-~s~~G-----------------~wT~~p~~f~N~fF~nLLd~~~~W~~~~~~~~~~~ 239 (297)
T cd08200 178 TLTAPEMTVLVGGLRVLGANYG-GSKHG-----------------VFTDRPGVLTNDFFVNLLDMSTEWKPADEDDGLFE 239 (297)
T ss_pred CCChHHHhheecchhhcccCCC-CCCCC-----------------CCcCCCCccccHHHHHHhcccceeeecCCCCCcee
Confidence 99999999999997 7998885 33221 489999999999999999621
Q ss_pred -----CCCcc--cccccccccCCcchHHHHHHHhhC--HHHHHHHHHHHHHHHHcCC
Q 013829 310 -----DEDLL--VLPTDAVLFEDPSFKVYAEKYAED--QEAFFKDYAEAHAKLSNLG 357 (436)
Q Consensus 310 -----g~~~l--lL~SD~aL~~D~~t~~~V~~yA~d--q~~Ff~dFa~Am~KMs~lg 357 (436)
++.++ .+++|.+|.+|+++|++|+.||.| |+.||+||++||+||+++.
T Consensus 240 ~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 240 GRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred eccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 12233 378899999999999999999999 9999999999999999984
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=2.7e-43 Score=379.80 Aligned_cols=234 Identities=27% Similarity=0.403 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHH----HcCCchhHHHHHHhhhccccCCCCCCCCCCCCCCcc-ccchhhhhhhcc--cCcHHHHHHHHH
Q 013829 102 QLKSAREDIRELL----KSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANAS-LRFEVELKHAAN--AGLVNALKLIQP 174 (436)
Q Consensus 102 ~~~~v~~~i~~~l----~~~~~aa~lLRLaFHDc~t~d~~~~~~~~~GGcDgS-I~~~~E~~~~~N--~GL~~~~~~i~~ 174 (436)
+++.|++||+++. .++.+.+.||||+||+++|||..+ ++||+||+ |||++|++|+.| .||.+++++|++
T Consensus 426 ~~~~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd----~rGGaNGariRl~pe~~w~~N~p~gL~~vl~~Le~ 501 (716)
T TIGR00198 426 DYTLSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSD----YRGGANGARIRLEPQKNWPVNEPTRLAKVLAVLEK 501 (716)
T ss_pred CchhHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCC----CCCCCCcceeecchhcCcccCCHHHHHHHHHHHHH
Confidence 4566688888864 345689999999999999999986 58999996 999999999999 899999999999
Q ss_pred HHHhCC--CCCHHHHHHHHhHHHHHHh---CCC--cccccCCCCCCCCCCCCCccCCCCCC-------------CCCCCH
Q 013829 175 IKDKYS--GVTYADLFQLASATAIEEA---GGP--KIPMKYGRVDVSGPEQCPEEGRLPAA-------------GPPSPA 234 (436)
Q Consensus 175 iK~~~~--~VS~ADliaLAa~~AV~~~---GGP--~i~v~~GR~D~~~s~~~~~~g~LP~~-------------~p~~~~ 234 (436)
||++|+ .||+||||+|||++|||.+ ||| .|||++||.|++... +++++..|.. ....+.
T Consensus 502 Ik~~f~~~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~-td~~~~~~l~p~adgfRn~~~~~~~~~~~ 580 (716)
T TIGR00198 502 IQAEFAKGPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAM-TDAESFTPLEPIADGFRNYLKRDYAVTPE 580 (716)
T ss_pred HHHHcCCCcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCC-CCccccccCCCCCcccchhccccccCCHH
Confidence 999998 8999999999999999999 897 689999999998663 4555544421 012345
Q ss_pred HHHHHHHHHcCCChHHHHHhhcc-cccccccCCCCCCCCCCCcccCCCCCCCCCCCccccccccchHHHHHHhhcc----
Q 013829 235 EHLRNVFYRMGLNDKEIVALSGA-HTVGRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKERR---- 309 (436)
Q Consensus 235 ~~l~~~F~~~Gls~~EmVALsGA-HTIG~~h~~~sg~g~pd~~~~~~cP~~~~~~~~~~tp~~FDN~Yfk~Ll~~k---- 309 (436)
++|++.|.++|||++|||||+|| |++|++|.. ++. ..|+.+|.+|||.||++|++-.
T Consensus 581 ~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~-s~~-----------------G~~T~~p~~f~NdfF~~LLd~~~~w~ 642 (716)
T TIGR00198 581 ELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGG-SKH-----------------GVFTDRVGVLSNDFFVNLLDMAYEWR 642 (716)
T ss_pred HHHHHHHHhCCCChHHHHheecchhhccccCCC-CCC-----------------CCCcCCCCccccHHHHHHhcCCceee
Confidence 67899999999999999999998 599999863 221 1488999999999999999721
Q ss_pred ---------------CCCcccc--cccccccCCcchHHHHHHHhhCH--HHHHHHHHHHHHHHHcCCC
Q 013829 310 ---------------DEDLLVL--PTDAVLFEDPSFKVYAEKYAEDQ--EAFFKDYAEAHAKLSNLGA 358 (436)
Q Consensus 310 ---------------g~~~llL--~SD~aL~~D~~t~~~V~~yA~dq--~~Ff~dFa~Am~KMs~lgv 358 (436)
++.+.++ ++|.+|..|+.+|++|+.||.|+ +.|++||++||.|+++++.
T Consensus 643 ~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm~ldr 710 (716)
T TIGR00198 643 AADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAAWTKVMNLDR 710 (716)
T ss_pred ecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHHHHHHHHHhCCC
Confidence 1233343 77999999999999999999997 8999999999999999985
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2.9e-42 Score=370.09 Aligned_cols=223 Identities=28% Similarity=0.419 Sum_probs=190.9
Q ss_pred HHHcCCchhHHHHHHhhhccccCCCCCCCCCCCCCCcc-ccchhhhhhhccc--CcHHHHHHHHHHHHhC-------CCC
Q 013829 113 LLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANAS-LRFEVELKHAANA--GLVNALKLIQPIKDKY-------SGV 182 (436)
Q Consensus 113 ~l~~~~~aa~lLRLaFHDc~t~d~~~~~~~~~GGcDgS-I~~~~E~~~~~N~--GL~~~~~~i~~iK~~~-------~~V 182 (436)
++.++-..+.||||+||+++|||..+ ++||+||. |||++|++|+.|. ||.+++++|++||++| +.|
T Consensus 448 i~~~gl~~~~LVr~AWhsA~Tyr~sd----~rGGaNGarIRl~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~~~~~~~v 523 (726)
T PRK15061 448 ILASGLSVSELVSTAWASASTFRGSD----KRGGANGARIRLAPQKDWEVNEPAQLAKVLAVLEGIQAEFNAAQSGGKKV 523 (726)
T ss_pred HHhcCCcHHHHHHHHHhhcccccCCC----CCCCCCccceecccccCccccCHHHHHHHHHHHHHHHHHHhhccCCCCce
Confidence 45567789999999999999999985 58999996 9999999999999 9999999999999998 579
Q ss_pred CHHHHHHHHhHHHHHHh---CC--CcccccCCCCCCCCCCCCCccC---CCCCCCC----------CCCHHHHHHHHHHc
Q 013829 183 TYADLFQLASATAIEEA---GG--PKIPMKYGRVDVSGPEQCPEEG---RLPAAGP----------PSPAEHLRNVFYRM 244 (436)
Q Consensus 183 S~ADliaLAa~~AV~~~---GG--P~i~v~~GR~D~~~s~~~~~~g---~LP~~~p----------~~~~~~l~~~F~~~ 244 (436)
|+||||+|||++|||.+ || |.|||.+||.|++.. +++++. ++|.+.. ..+.++|+++|.+|
T Consensus 524 S~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~-~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d~a~~l 602 (726)
T PRK15061 524 SLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQE-QTDVESFAVLEPKADGFRNYLKKGYSVSPEELLVDKAQLL 602 (726)
T ss_pred eHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccC-CCCcccccccCCCCccccccccccCCCCHHHHHHHHHHhC
Confidence 99999999999999999 58 999999999999864 455543 5665321 13457899999999
Q ss_pred CCChHHHHHhhccc-ccccccCCCCCCCCCCCcccCCCCCCCCCCCccccccccchHHHHHHhhcc--------------
Q 013829 245 GLNDKEIVALSGAH-TVGRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKERR-------------- 309 (436)
Q Consensus 245 Gls~~EmVALsGAH-TIG~~h~~~sg~g~pd~~~~~~cP~~~~~~~~~~tp~~FDN~Yfk~Ll~~k-------------- 309 (436)
||+++|||||+||| ++|++|.. ++.| .|+.+|.+|||.||++|++-.
T Consensus 603 glt~~EmvaL~Gg~r~Lg~~~~~-S~~G-----------------~~T~~p~~fsNdfFvnLLdm~~~W~~~~~~~~~ye 664 (726)
T PRK15061 603 TLTAPEMTVLVGGLRVLGANYGG-SKHG-----------------VFTDRPGVLTNDFFVNLLDMGTEWKPTDEDEEVYE 664 (726)
T ss_pred CCChHHHhheecchhhcccCCCC-CCCC-----------------CCcCCCCccccHHHHHHhcCCceeeecCCCCCcee
Confidence 99999999999997 78988842 3221 488999999999999999621
Q ss_pred -----CCCccc--ccccccccCCcchHHHHHHHhhC--HHHHHHHHHHHHHHHHcCCC
Q 013829 310 -----DEDLLV--LPTDAVLFEDPSFKVYAEKYAED--QEAFFKDYAEAHAKLSNLGA 358 (436)
Q Consensus 310 -----g~~~ll--L~SD~aL~~D~~t~~~V~~yA~d--q~~Ff~dFa~Am~KMs~lgv 358 (436)
++.+++ +++|.+|.+|+.+|++|+.||.| |+.|++||++||.|+++++.
T Consensus 665 ~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvmeldr 722 (726)
T PRK15061 665 GRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKVMNLDR 722 (726)
T ss_pred eccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCCC
Confidence 233444 57899999999999999999999 99999999999999999974
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-40 Score=343.39 Aligned_cols=315 Identities=30% Similarity=0.506 Sum_probs=248.9
Q ss_pred CccccccccCccccccccccccCCCCCCcccCCCCChHHHHHHHHHHHHHHHcC---------CchhHHHHHHhhhcccc
Q 013829 64 PSSLKCLRFSPLISQRRSSVNRGYSTVPTTKCAASDPDQLKSAREDIRELLKST---------FCHPILVRLGWHDAGTY 134 (436)
Q Consensus 64 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~v~~~i~~~l~~~---------~~aa~lLRLaFHDc~t~ 134 (436)
+++|++|++|+..|+|.|. .|++ ..+...-++..++.++++++++. ..+|.+|||+||-++||
T Consensus 38 ~L~l~iL~qh~~~snP~g~---~fdY-----aeefk~lD~~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTY 109 (730)
T COG0376 38 QLNLKILHQHSSKSNPMGE---DFDY-----AEEFKSLDLAAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTY 109 (730)
T ss_pred cccchHHhhhhcccCCCcc---chHH-----HHHhhhccHHHHHHHHHHHhhcccccCcccccccccceeeeeecccCce
Confidence 7999999999999999885 6777 44444567788999999999874 36899999999999999
Q ss_pred CCCCCCCCCCCCCC-ccccchhhhhhhcccCcHHHHHHHHHHHHhCC-CCCHHHHHHHHhHHHHHHhCCCcccccCCCCC
Q 013829 135 DKNIEEWPRRGGAN-ASLRFEVELKHAANAGLVNALKLIQPIKDKYS-GVTYADLFQLASATAIEEAGGPKIPMKYGRVD 212 (436)
Q Consensus 135 d~~~~~~~~~GGcD-gSI~~~~E~~~~~N~GL~~~~~~i~~iK~~~~-~VS~ADliaLAa~~AV~~~GGP~i~v~~GR~D 212 (436)
+... ++||+. |..||.++.+||.|.+|++++.+|.+||.+|. .||+||||.|++.+|+|.+|++++.|..||.|
T Consensus 110 Ri~D----GRGGa~~G~qRFaPlnSWPDN~nLDKarRLLWPIKkKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D 185 (730)
T COG0376 110 RIGD----GRGGAGGGQQRFAPLNSWPDNANLDKARRLLWPIKKKYGRKISWADLIILAGNVALESMGFKTFGFAGGRED 185 (730)
T ss_pred eccc----CCCCCCCCceecccccCCCcccchHHHHHHhhhHhHhhcccccHhHhhhhhchhhhhhcCCccccccCCCCc
Confidence 9874 678885 69999999999999999999999999999997 79999999999999999999999999999999
Q ss_pred CCCCCC--------------------------------------CCccCCCCCCCCCCCHHHHHHHHHHcCCChHHHHHh
Q 013829 213 VSGPEQ--------------------------------------CPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVAL 254 (436)
Q Consensus 213 ~~~s~~--------------------------------------~~~~g~LP~~~p~~~~~~l~~~F~~~Gls~~EmVAL 254 (436)
...+.. ..+ +..|+ |-..+.++++.|+||++|++|.|||
T Consensus 186 ~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIYVNPEGp-ng~PD--pl~aA~dIRetFaRMaMNDeETVAL 262 (730)
T COG0376 186 VWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIYVNPEGP-NGNPD--PLAAARDIRETFARMAMNDEETVAL 262 (730)
T ss_pred CCCCccccccCccccccccccccccccccCchhhheeeeEEeCCCCC-CCCCC--hhhhHHHHHHHHHHhcCCcHhhhhh
Confidence 988765 112 23566 6677889999999999999999999
Q ss_pred h-cccccccccCCCC-CCCCCCCc--------------c-cCCCCCC--CC-CCCccccccccchHHHHHHhhcc-----
Q 013829 255 S-GAHTVGRSRPERS-GWGKPETK--------------Y-TKDGPGA--PG-GQSWTVQWLKFDNSYFKDIKERR----- 309 (436)
Q Consensus 255 s-GAHTIG~~h~~~s-g~g~pd~~--------------~-~~~cP~~--~~-~~~~~~tp~~FDN~Yfk~Ll~~k----- 309 (436)
+ ||||+|++|.... ..-.|+|. | ...++++ .| +..|+.+|++|||+||.+|+...
T Consensus 263 iaGGHtfGKtHGag~a~~vg~ePe~a~ie~qGlGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltk 342 (730)
T COG0376 263 IAGGHTFGKTHGAGPASNVGPEPEAAPIEQQGLGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTK 342 (730)
T ss_pred hhcccccccccCCCchhhcCCCccccchhhhccccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeec
Confidence 9 7999999996421 01112221 1 1112211 11 45799999999999999998631
Q ss_pred -----------C---------------CCcccccccccccCCcchHHHHHHHhhCHHHHHHHHHHHHHHHHc--CCCCC-
Q 013829 310 -----------D---------------EDLLVLPTDAVLFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSN--LGAKF- 360 (436)
Q Consensus 310 -----------g---------------~~~llL~SD~aL~~D~~t~~~V~~yA~dq~~Ff~dFa~Am~KMs~--lgv~t- 360 (436)
. -.++||.+|.+|..||.++++.++|..||+.|.+.|++||-||.. +|.+-
T Consensus 343 sPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~MlttDlaLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRDMGP~~r 422 (730)
T COG0376 343 SPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLTTDLALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHRDMGPKAR 422 (730)
T ss_pred CCCccccccccCccccCCCCCCCcccccCceeeccchhhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhccCCchhh
Confidence 0 157899999999999999999999999999999999999999986 44432
Q ss_pred -----CCCCCceecCCCCcchhhhccCCCCchhhhHHHHHHHHH
Q 013829 361 -----DPPEGIVLDDGAAPEKFVAAKYSSGKSELSEAMKQKIRA 399 (436)
Q Consensus 361 -----g~~~~i~l~~~~~~~~~~a~~~~~~k~e~s~~~~~~~~~ 399 (436)
-+.+..+.++++. +..|.--..++ .+.|.||.+
T Consensus 423 ylGp~VP~e~liWQDpiP-----~vd~~l~d~di-~~lK~~Ila 460 (730)
T COG0376 423 YLGPEVPKEDLIWQDPLP-----AVDYELVDADI-AALKAKILA 460 (730)
T ss_pred ccCCCCchhhhhccCCCC-----ccccccchHHH-HHHHHHHHH
Confidence 1223444554422 22232223455 588888887
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.3e-17 Score=173.73 Aligned_cols=222 Identities=28% Similarity=0.418 Sum_probs=169.5
Q ss_pred HHHcCCchhHHHHHHhhhccccCCCCCCCCCCCCCCc-cccchhhhhhhccc--CcHHHHHHHHHHHHhCC-CCCHHHHH
Q 013829 113 LLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANA-SLRFEVELKHAANA--GLVNALKLIQPIKDKYS-GVTYADLF 188 (436)
Q Consensus 113 ~l~~~~~aa~lLRLaFHDc~t~d~~~~~~~~~GGcDg-SI~~~~E~~~~~N~--GL~~~~~~i~~iK~~~~-~VS~ADli 188 (436)
+++++-....+|-++|-.+.||..+. ++||+|| .|++.+.++|+.|. .|.+.+.+++.|...+. .||.||||
T Consensus 458 IlasgLsvs~lVstAWaSAsTfRgsD----kRGGaNGaRirLaPqkdWevN~P~~l~kvl~~le~iq~~fnkkvSlADlI 533 (730)
T COG0376 458 ILASGLSVSQLVSTAWASASTFRGSD----KRGGANGARIRLAPQKDWEVNQPAELAKVLAVLEKIQKEFNKKVSLADLI 533 (730)
T ss_pred HHHccCCHHHHHHHHHHhhhhccCCc----ccCCcCcceEeecccccCCCCCHHHHHHHHHHHHHHHHHhcCccchhHhe
Confidence 55667788999999999999999875 5899998 99999999999994 67889999999999986 59999999
Q ss_pred HHHhHHHHHHh---CC--CcccccCCCCCCCCCCCCCccCCC---CC----------CCCCCCHHHHHHHHHHcCCChHH
Q 013829 189 QLASATAIEEA---GG--PKIPMKYGRVDVSGPEQCPEEGRL---PA----------AGPPSPAEHLRNVFYRMGLNDKE 250 (436)
Q Consensus 189 aLAa~~AV~~~---GG--P~i~v~~GR~D~~~s~~~~~~g~L---P~----------~~p~~~~~~l~~~F~~~Gls~~E 250 (436)
+|++..|||.+ +| -.+||..||.|++.. +++++..- |- ...-.+.+-|++.-+-.+|+..|
T Consensus 534 VL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qe-qtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkAqlL~Ltape 612 (730)
T COG0376 534 VLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQE-QTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKAQLLTLTAPE 612 (730)
T ss_pred eecchHHHHHHHHhcCceeeeccCCCCcccchh-hcchhhhhcccccchhhhhhccCCCcCCHHHHHHHHHHHhccCCcc
Confidence 99999999987 44 357899999999754 44443211 11 01223344578888899999999
Q ss_pred HHHhhccc-ccccccCCCCCCCCCCCcccCCCCCCCCCCCccccccccchHHHHHHhhc-------------------cC
Q 013829 251 IVALSGAH-TVGRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKER-------------------RD 310 (436)
Q Consensus 251 mVALsGAH-TIG~~h~~~sg~g~pd~~~~~~cP~~~~~~~~~~tp~~FDN~Yfk~Ll~~-------------------kg 310 (436)
|++|+||- -||..+.. +..| -|+..|....|.||.||++= ++
T Consensus 613 mtVLiGGlRvLg~n~g~-s~~G-----------------VfT~~pg~LtndFFvnLlDM~~~W~~~~~~~~~feg~Drkt 674 (730)
T COG0376 613 MTVLIGGLRVLGANYGG-SKHG-----------------VFTDRPGVLTNDFFVNLLDMGTEWKPTDDARGLFEGRDRKT 674 (730)
T ss_pred ceEEEcceEeeccCCCC-Cccc-----------------eeccCcccccchhhhhhhhccceeeeccccccceecccccc
Confidence 99999865 44433211 0000 14556678888888888761 12
Q ss_pred CCccc--ccccccccCCcchHHHHHHHhhC--HHHHHHHHHHHHHHHHcCC
Q 013829 311 EDLLV--LPTDAVLFEDPSFKVYAEKYAED--QEAFFKDYAEAHAKLSNLG 357 (436)
Q Consensus 311 ~~~ll--L~SD~aL~~D~~t~~~V~~yA~d--q~~Ff~dFa~Am~KMs~lg 357 (436)
+.+.. ...|..+-+++..|.+++.||.| ++.|.+||+.||.|..++.
T Consensus 675 G~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 675 GEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred CceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence 23333 45577777889999999999986 8899999999999999985
No 19
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=69.88 E-value=3.4 Score=34.32 Aligned_cols=43 Identities=28% Similarity=0.374 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCceecCC---CCcc-hhhhccCCCCch
Q 013829 341 AFFKDYAEAHAKLSNLGAKFDPPEGIVLDDG---AAPE-KFVAAKYSSGKS 387 (436)
Q Consensus 341 ~Ff~dFa~Am~KMs~lgv~tg~~~~i~l~~~---~~~~-~~~a~~~~~~k~ 387 (436)
.....|..||.||+.||. +..-..||+ ..|. ......++.+|+
T Consensus 2 ~m~~~F~~am~KlavLG~----d~~~LiDCSdVIP~p~p~~~~a~fPAg~~ 48 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGH----DRSDLIDCSDVIPVPKPLTGKAHFPAGKS 48 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-----GGGSEE-GGGS----S-SSSSEBGTT--
T ss_pred hHHHHHHHHHHHHHHhcC----ChhhcccchhhccCCCCCCCCcccCCCCC
Confidence 356789999999999996 556778887 2222 222466666664
No 20
>PF04852 DUF640: Protein of unknown function (DUF640); InterPro: IPR006936 This conserved region is found in plant proteins including the resistance protein-like protein (O49468 from SWISSPROT).
Probab=53.45 E-value=13 Score=33.68 Aligned_cols=27 Identities=33% Similarity=0.637 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccccchhHHH
Q 013829 391 EAMKQKIRAEYEAVGGSPDTPLRSNYFLNIM 421 (436)
Q Consensus 391 ~~~~~~~~~~~~~~gg~p~~~~~~~~fl~i~ 421 (436)
+..++|||+.|++.||.|+ .|-|..=.
T Consensus 95 DalIGrLraafee~Gg~pe----~NPf~~~~ 121 (132)
T PF04852_consen 95 DALIGRLRAAFEEHGGHPE----ANPFAARA 121 (132)
T ss_pred HHHHHHHHHHHHHhCCCCC----CCchhhHH
Confidence 6899999999999999999 78776543
No 21
>PTZ00234 variable surface protein Vir12; Provisional
Probab=34.25 E-value=26 Score=37.67 Aligned_cols=23 Identities=30% Similarity=0.662 Sum_probs=20.3
Q ss_pred ccccchhHHHHHHHHHHHHHHhh
Q 013829 412 LRSNYFLNIMIVVAVLALLTSLF 434 (436)
Q Consensus 412 ~~~~~fl~i~~~~~~~~~~~~~~ 434 (436)
|-+|+|=|||+++|||.++.-||
T Consensus 359 ~dSn~~rniim~~ailGtifFlf 381 (433)
T PTZ00234 359 LKSEYFRHSIVGASIIGVLVFLF 381 (433)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhh
Confidence 67999999999999999877664
No 22
>PTZ00411 transaldolase-like protein; Provisional
Probab=30.05 E-value=50 Score=34.36 Aligned_cols=92 Identities=22% Similarity=0.281 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhCCCCCHHH--HHHHHhHHHHHHhCCCcccccCCCCCCCCCCCCCccCCCCCCC-CCCCHHHHHHHHHH
Q 013829 167 NALKLIQPIKDKYSGVTYAD--LFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAG-PPSPAEHLRNVFYR 243 (436)
Q Consensus 167 ~~~~~i~~iK~~~~~VS~AD--liaLAa~~AV~~~GGP~i~v~~GR~D~~~s~~~~~~g~LP~~~-p~~~~~~l~~~F~~ 243 (436)
.|+..++.+++. +|.|== ++.++=+.+...+|-..|..++||.|...-.........+... .-..+.++.+.|+.
T Consensus 148 eGi~Aa~~L~~e--GI~~N~TlvFS~~QA~aaaeAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~ 225 (333)
T PTZ00411 148 EGIQAAKALEKE--GIHCNLTLLFSFAQAVACAQAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKK 225 (333)
T ss_pred HHHHHHHHHHHC--CCceeEeEecCHHHHHHHHHcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHH
Confidence 456666666543 333322 2222223333445888899999999765322111111111100 11235567778887
Q ss_pred cCC----------ChHHHHHhhccccc
Q 013829 244 MGL----------NDKEIVALSGAHTV 260 (436)
Q Consensus 244 ~Gl----------s~~EmVALsGAHTI 260 (436)
.|+ +.+|+..|.|+|.+
T Consensus 226 ~g~~T~Im~ASfRn~~qi~~laG~D~l 252 (333)
T PTZ00411 226 HGYKTIVMGASFRNTGEILELAGCDKL 252 (333)
T ss_pred cCCCeEEEecccCCHHHHHHHHCCCEE
Confidence 775 56888889999855
No 23
>PRK12346 transaldolase A; Provisional
Probab=28.66 E-value=49 Score=34.17 Aligned_cols=92 Identities=16% Similarity=0.216 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHH--HhHHHHHHhCCCcccccCCCCCCCCCCCCCccCCCCCCC-CCCCHHHHHHHHHH
Q 013829 167 NALKLIQPIKDKYSGVTYADLFQL--ASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAG-PPSPAEHLRNVFYR 243 (436)
Q Consensus 167 ~~~~~i~~iK~~~~~VS~ADliaL--Aa~~AV~~~GGP~i~v~~GR~D~~~s~~~~~~g~LP~~~-p~~~~~~l~~~F~~ 243 (436)
.|+..++.+++. +|+|-=-+.+ +=..+...+|-..|..++||.|...-........-+... .-..+.++.+.|++
T Consensus 137 eGi~A~~~L~~~--GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~ 214 (316)
T PRK12346 137 EGIRAAEELEKE--GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQ 214 (316)
T ss_pred HHHHHHHHHHHC--CCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHH
Confidence 455566665543 4444332333 333444456889999999999875322111111111100 12346667788878
Q ss_pred cCC----------ChHHHHHhhccccc
Q 013829 244 MGL----------NDKEIVALSGAHTV 260 (436)
Q Consensus 244 ~Gl----------s~~EmVALsGAHTI 260 (436)
.|+ +.+|+.+|.|+|.+
T Consensus 215 ~~~~T~Vm~ASfRn~~qi~alaG~d~l 241 (316)
T PRK12346 215 HRYETIVMGASFRRTEQILALAGCDRL 241 (316)
T ss_pred cCCCcEEEecccCCHHHHHHHhCCCEE
Confidence 774 56888889998855
No 24
>PF09047 MEF2_binding: MEF2 binding; InterPro: IPR015134 The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the calcineurin-binding protein CABIN 1, adopts an amphipathic alpha-helical structure, which allows it to bind a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription []. ; PDB: 1N6J_G.
Probab=23.60 E-value=85 Score=21.84 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=13.3
Q ss_pred CCchhhhHHHHHHHHHHHHHh
Q 013829 384 SGKSELSEAMKQKIRAEYEAV 404 (436)
Q Consensus 384 ~~k~e~s~~~~~~~~~~~~~~ 404 (436)
++|+-+|+|-||||+.-...-
T Consensus 4 spkgsiseetkqklk~~ils~ 24 (35)
T PF09047_consen 4 SPKGSISEETKQKLKSAILSA 24 (35)
T ss_dssp --SS---HHHHHHHHHHHHTT
T ss_pred CCCCcccHHHHHHHHHHHhhh
Confidence 578999999999999876543
No 25
>PRK11056 hypothetical protein; Provisional
Probab=21.40 E-value=92 Score=27.88 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=25.7
Q ss_pred HHhcCCCCCcccccchhHHHHHHHHHHHHHHhh
Q 013829 402 EAVGGSPDTPLRSNYFLNIMIVVAVLALLTSLF 434 (436)
Q Consensus 402 ~~~gg~p~~~~~~~~fl~i~~~~~~~~~~~~~~ 434 (436)
..+-...-|.+.+|.|=-|++++.++||..++.
T Consensus 80 SA~vraeyPeiGSNF~p~il~~~L~~Wi~~kl~ 112 (120)
T PRK11056 80 SAFVRAEYPEIGSNFFPAVLSVILVFWIGRKLR 112 (120)
T ss_pred HHHHHhcCcccccchHHHHHHHHHHHHHHHHHh
Confidence 344444456778999999999999999988764
No 26
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=20.01 E-value=82 Score=28.10 Aligned_cols=27 Identities=22% Similarity=0.269 Sum_probs=22.0
Q ss_pred CCCcccccchhHHHHHHHHHHHHHHhh
Q 013829 408 PDTPLRSNYFLNIMIVVAVLALLTSLF 434 (436)
Q Consensus 408 p~~~~~~~~fl~i~~~~~~~~~~~~~~ 434 (436)
--|.+.+|+|=-|++++.++||.-++.
T Consensus 86 qyPeiGSNFfp~il~l~L~~Wi~~kl~ 112 (117)
T PF07226_consen 86 QYPEIGSNFFPSILCLILVFWIGYKLG 112 (117)
T ss_pred hchhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 335566899999999999999987763
Done!