Your job contains 1 sequence.
>013831
MATAKRELELPDGDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDN
GLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS
RGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFA
KNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVE
GYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT
NLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARK
RKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPG
SDELFDQRRGSAAFG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013831
(435 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-040426-2432 - symbol:hnrnpul1 "heterogeneou... 628 2.1e-61 1
UNIPROTKB|J9JHA9 - symbol:HNRNPUL1 "Uncharacterized prote... 603 9.3e-59 1
UNIPROTKB|B7Z4B8 - symbol:HNRNPUL1 "cDNA FLJ56481, highly... 603 9.3e-59 1
UNIPROTKB|E2RNY1 - symbol:HNRNPUL1 "Uncharacterized prote... 603 1.1e-58 1
UNIPROTKB|Q9BUJ2 - symbol:HNRNPUL1 "Heterogeneous nuclear... 603 1.1e-58 1
UNIPROTKB|A4FUC2 - symbol:HNRNPUL1 "Uncharacterized prote... 603 1.1e-58 1
MGI|MGI:2443517 - symbol:Hnrnpul1 "heterogeneous nuclear ... 603 1.1e-58 1
RGD|1307456 - symbol:Hnrnpul1 "heterogeneous nuclear ribo... 601 2.0e-58 1
ZFIN|ZDB-GENE-030131-6422 - symbol:hnrnpub "heterogeneous... 517 1.4e-51 2
UNIPROTKB|F1Q3W0 - symbol:HNRNPU "Uncharacterized protein... 516 3.7e-51 2
UNIPROTKB|Q00839 - symbol:HNRNPU "Heterogeneous nuclear r... 516 5.2e-51 2
RGD|620372 - symbol:Hnrnpu "heterogeneous nuclear ribonuc... 515 6.7e-51 2
MGI|MGI:1858195 - symbol:Hnrnpu "heterogeneous nuclear ri... 515 7.0e-51 2
UNIPROTKB|F1S8L9 - symbol:HNRNPU "Uncharacterized protein... 522 8.7e-50 1
UNIPROTKB|J9P6J3 - symbol:HNRNPU "Uncharacterized protein... 516 1.5e-49 1
UNIPROTKB|F1MFT4 - symbol:HNRNPU "Uncharacterized protein... 515 2.0e-49 1
UNIPROTKB|F1NSP8 - symbol:HNRNPU "Uncharacterized protein... 507 1.4e-48 1
UNIPROTKB|F1NM96 - symbol:HNRNPU "Uncharacterized protein... 500 7.7e-48 1
UNIPROTKB|F1P8K1 - symbol:HNRNPUL2 "Uncharacterized prote... 480 2.9e-45 1
UNIPROTKB|J9PAS2 - symbol:HNRNPUL2 "Uncharacterized prote... 480 3.4e-45 1
MGI|MGI:1915943 - symbol:Hnrnpul2 "heterogeneous nuclear ... 475 1.0e-44 1
ZFIN|ZDB-GENE-030131-3731 - symbol:hnrnpua "heterogeneous... 475 1.2e-44 1
UNIPROTKB|E1BNQ9 - symbol:HNRNPUL2 "Uncharacterized prote... 472 2.3e-44 1
RGD|1562784 - symbol:Hnrnpul2 "heterogeneous nuclear ribo... 471 2.9e-44 1
UNIPROTKB|I3LUR1 - symbol:HNRNPUL2 "Uncharacterized prote... 466 1.1e-43 1
UNIPROTKB|H3BQZ7 - symbol:hCG_2044799 "Uncharacterized pr... 465 1.4e-43 1
UNIPROTKB|Q1KMD3 - symbol:HNRNPUL2 "Heterogeneous nuclear... 465 1.4e-43 1
ZFIN|ZDB-GENE-081107-3 - symbol:si:ch211-107m4.1 "si:ch21... 448 8.0e-42 1
FB|FBgn0050122 - symbol:CG30122 species:7227 "Drosophila ... 284 5.9e-40 2
UNIPROTKB|I3LU51 - symbol:HNRNPUL1 "Uncharacterized prote... 392 2.1e-35 1
WB|WBGene00012769 - symbol:Y41E3.11 species:6239 "Caenorh... 318 6.0e-28 2
UNIPROTKB|Q5RI18 - symbol:HNRNPU "Heterogeneous nuclear r... 205 5.9e-16 1
>ZFIN|ZDB-GENE-040426-2432 [details] [associations]
symbol:hnrnpul1 "heterogeneous nuclear
ribonucleoprotein U-like 1" species:7955 "Danio rerio" [GO:0006396
"RNA processing" evidence=IEA] [GO:0009615 "response to virus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR003034 InterPro:IPR027025 Pfam:PF02037 PROSITE:PS50800
SMART:SM00513 ZFIN:ZDB-GENE-040426-2432 GO:GO:0003676 GO:GO:0009615
GO:GO:0006396 InterPro:IPR008985 SUPFAM:SSF49899 Gene3D:1.10.720.30
GO:GO:0030529 InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449
PROSITE:PS50188 CTD:11100 HOVERGEN:HBG061101 KO:K15047
PANTHER:PTHR12381:SF10 EMBL:BC068436 IPI:IPI00493247
RefSeq:NP_998436.1 UniGene:Dr.77145 ProteinModelPortal:Q6NUT5
SMR:Q6NUT5 STRING:Q6NUT5 PRIDE:Q6NUT5 GeneID:406555 KEGG:dre:406555
InParanoid:Q6NUT5 NextBio:20818115 ArrayExpress:Q6NUT5 Bgee:Q6NUT5
Uniprot:Q6NUT5
Length = 784
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 153/374 (40%), Positives = 210/374 (56%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
V ++ + DL F + + L EGFAY WSGARA G+N G+ C+ K+ V
Sbjct: 201 VAIDTYNSDLHFKVSPDHCSGYPLTIEGFAYLWSGARATYGVNKGRVCYELKVKEYISVK 260
Query: 104 -MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVGDT 162
+ + PD HV RVG S D +LGE S ++GEKFG GD
Sbjct: 261 HLPSSEPDP-HVVRVGWSL-DSCSTQLGEEAFSYGYGGTGKKSTNYKFGDYGEKFGEGDI 318
Query: 163 IICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK 222
I C ID +S + F+KNGKWL A + KE A+FPH+L+K
Sbjct: 319 IGCYIDFDSHEQVEMAFSKNGKWLDVAFRVS-------------KEELAGQALFPHVLVK 365
Query: 223 NVVVVMQFSV-EQGLIPV-EGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPASGK 279
N V F E+ P+ +GY S++ + N V G + K DC+V+MMVGLPA GK
Sbjct: 366 NCAVEFNFGQREEPYFPLPDGY-SFIGDVSLENRVRGTVGPSSKSDCQVLMMVGLPACGK 424
Query: 280 TTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSR 339
TTWA K + +P+KR+ +LGTN I+E+MKV GL R+ NY+ R+ L+ +A + LL
Sbjct: 425 TTWAAKHAEMNPDKRFNILGTNAIMEKMKVMGLRRQRNYAGRWDILIQQATQCLNRLLQI 484
Query: 340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVP 399
AS RN+I+DQTNV+ SA++RK+R F F + AVV+ P+ EDLK R K+ ++ GK+VP
Sbjct: 485 ASHKKRNYILDQTNVYGSAQRRKMRPFEGFHRKAVVICPRDEDLKERRCKQAED-GKDVP 543
Query: 400 ADAVNNMLANYVLP 413
AV M AN+VLP
Sbjct: 544 DQAVLEMKANFVLP 557
>UNIPROTKB|J9JHA9 [details] [associations]
symbol:HNRNPUL1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0009615 "response to virus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR003877 InterPro:IPR027025 Pfam:PF00622 GO:GO:0009615
GO:GO:0006396 InterPro:IPR008985 SUPFAM:SSF49899 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 CTD:11100
KO:K15047 PANTHER:PTHR12381:SF10 GeneTree:ENSGT00390000020210
EMBL:AAEX03000936 GeneID:476452 KEGG:cfa:476452
RefSeq:XP_003432631.1 RefSeq:XP_533659.2 RefSeq:XP_866586.1
Ensembl:ENSCAFT00000048725 Uniprot:J9JHA9
Length = 756
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 147/376 (39%), Positives = 206/376 (54%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSG--LHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP 101
V ++ +CDL F + + +SSG L EGFAY WSGARA+ G+ G+ CF KI
Sbjct: 111 VAIDTYNCDLHFKVARD--RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEIS 168
Query: 102 VD-MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVG 160
V + T PD HV R+G S D +LGE S N+G+KF
Sbjct: 169 VKHLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAEN 226
Query: 161 DTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHIL 220
D I C D E + F KNGKW+G A F LG A++PH+L
Sbjct: 227 DVIGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALG-----------GQALYPHVL 273
Query: 221 LKNVVVVMQFS--VEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPAS 277
+KN V F E + G+ +++ L + G K +CE++MMVGLPA+
Sbjct: 274 VKNCAVEFNFGQRAEPYCSVLPGF-TFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAA 332
Query: 278 GKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLL 337
GKTTWA K +P K+Y +LGTN I+++M+V GL R+ NY+ R+ L+ +A + L+
Sbjct: 333 GKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLI 392
Query: 338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
A+R RN+I+DQTNV+ SA++RK+R F F++ A+V+ P EDLK R++KR E GK+
Sbjct: 393 QIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKD 452
Query: 398 VPADAVNNMLANYVLP 413
VP AV M AN+ LP
Sbjct: 453 VPDHAVLEMKANFTLP 468
>UNIPROTKB|B7Z4B8 [details] [associations]
symbol:HNRNPUL1 "cDNA FLJ56481, highly similar to
Heterogeneous nuclear ribonucleoprotein U-like protein 1"
species:9606 "Homo sapiens" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR003877
InterPro:IPR027025 Pfam:PF00622 GO:GO:0003676 GO:GO:0009615
GO:GO:0006396 InterPro:IPR008985 SUPFAM:SSF49899 GO:GO:0030529
InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
EMBL:AC011462 EMBL:AC011510 UniGene:Hs.155218 UniGene:Hs.718642
HGNC:HGNC:17011 HOVERGEN:HBG061101 ChiTaRS:HNRNPUL1
PANTHER:PTHR12381:SF10 EMBL:AK297127 IPI:IPI01009355 SMR:B7Z4B8
STRING:B7Z4B8 Ensembl:ENST00000263367 Uniprot:B7Z4B8
Length = 767
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 147/376 (39%), Positives = 206/376 (54%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSG--LHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP 101
V ++ +CDL F + + +SSG L EGFAY WSGARA+ G+ G+ CF KI
Sbjct: 122 VAIDTYNCDLHFKVARD--RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEIS 179
Query: 102 VD-MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVG 160
V + T PD HV R+G S D +LGE S N+G+KF
Sbjct: 180 VKHLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAEN 237
Query: 161 DTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHIL 220
D I C D E + F KNGKW+G A F LG A++PH+L
Sbjct: 238 DVIGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALG-----------GQALYPHVL 284
Query: 221 LKNVVVVMQFS--VEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPAS 277
+KN V F E + G+ +++ L + G K +CE++MMVGLPA+
Sbjct: 285 VKNCAVEFNFGQRAEPYCSVLPGF-TFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAA 343
Query: 278 GKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLL 337
GKTTWA K +P K+Y +LGTN I+++M+V GL R+ NY+ R+ L+ +A + L+
Sbjct: 344 GKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLI 403
Query: 338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
A+R RN+I+DQTNV+ SA++RK+R F F++ A+V+ P EDLK R++KR E GK+
Sbjct: 404 QIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKD 463
Query: 398 VPADAVNNMLANYVLP 413
VP AV M AN+ LP
Sbjct: 464 VPDHAVLEMKANFTLP 479
>UNIPROTKB|E2RNY1 [details] [associations]
symbol:HNRNPUL1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0009615 "response to virus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR003034
InterPro:IPR003877 InterPro:IPR027025 Pfam:PF00622 Pfam:PF02037
PROSITE:PS50800 SMART:SM00513 GO:GO:0005634 GO:GO:0003676
GO:GO:0009615 GO:GO:0006396 InterPro:IPR008985 SUPFAM:SSF49899
Gene3D:1.10.720.30 InterPro:IPR001870 InterPro:IPR018355
SMART:SM00449 PROSITE:PS50188 CTD:11100 KO:K15047 OMA:SGPDGHY
PANTHER:PTHR12381:SF10 GeneTree:ENSGT00390000020210
EMBL:AAEX03000936 RefSeq:XP_852865.1 Ensembl:ENSCAFT00000008087
GeneID:476452 KEGG:cfa:476452 NextBio:20852109 Uniprot:E2RNY1
Length = 856
Score = 603 (217.3 bits), Expect = 1.1e-58, P = 1.1e-58
Identities = 147/376 (39%), Positives = 206/376 (54%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSG--LHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP 101
V ++ +CDL F + + +SSG L EGFAY WSGARA+ G+ G+ CF KI
Sbjct: 211 VAIDTYNCDLHFKVARD--RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEIS 268
Query: 102 VD-MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVG 160
V + T PD HV R+G S D +LGE S N+G+KF
Sbjct: 269 VKHLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAEN 326
Query: 161 DTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHIL 220
D I C D E + F KNGKW+G A F LG A++PH+L
Sbjct: 327 DVIGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALG-----------GQALYPHVL 373
Query: 221 LKNVVVVMQFS--VEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPAS 277
+KN V F E + G+ +++ L + G K +CE++MMVGLPA+
Sbjct: 374 VKNCAVEFNFGQRAEPYCSVLPGF-TFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAA 432
Query: 278 GKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLL 337
GKTTWA K +P K+Y +LGTN I+++M+V GL R+ NY+ R+ L+ +A + L+
Sbjct: 433 GKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLI 492
Query: 338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
A+R RN+I+DQTNV+ SA++RK+R F F++ A+V+ P EDLK R++KR E GK+
Sbjct: 493 QIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKD 552
Query: 398 VPADAVNNMLANYVLP 413
VP AV M AN+ LP
Sbjct: 553 VPDHAVLEMKANFTLP 568
>UNIPROTKB|Q9BUJ2 [details] [associations]
symbol:HNRNPUL1 "Heterogeneous nuclear ribonucleoprotein
U-like protein 1" species:9606 "Homo sapiens" [GO:0009615 "response
to virus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
InterPro:IPR003034 InterPro:IPR003877 InterPro:IPR027025
Pfam:PF00622 Pfam:PF02037 PROSITE:PS50800 SMART:SM00513
GO:GO:0005654 GO:GO:0006355 Reactome:REACT_1675 EMBL:CH471126
GO:GO:0006351 GO:GO:0003723 GO:GO:0009615 InterPro:IPR008985
SUPFAM:SSF49899 Gene3D:1.10.720.30 GO:GO:0030529 GO:GO:0000398
InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
EMBL:AC011462 EMBL:AJ007509 EMBL:AK021455 EMBL:AK022863
EMBL:AK127057 EMBL:AC011510 EMBL:BC002564 EMBL:BC009988
EMBL:BC014232 EMBL:BC027713 EMBL:AL050146 IPI:IPI00013070
IPI:IPI00167147 IPI:IPI00386971 IPI:IPI00402391 IPI:IPI00736859
PIR:T08776 PIR:T13159 RefSeq:NP_008971.2 RefSeq:NP_653333.1
UniGene:Hs.155218 UniGene:Hs.718642 ProteinModelPortal:Q9BUJ2
SMR:Q9BUJ2 IntAct:Q9BUJ2 MINT:MINT-121512 STRING:Q9BUJ2
PhosphoSite:Q9BUJ2 DMDM:90101344 PaxDb:Q9BUJ2 PRIDE:Q9BUJ2
DNASU:11100 Ensembl:ENST00000352456 Ensembl:ENST00000378215
Ensembl:ENST00000392006 GeneID:11100 KEGG:hsa:11100 UCSC:uc002opz.4
UCSC:uc002oqc.4 UCSC:uc002oqf.4 UCSC:uc010ehl.1 UCSC:uc010ehm.3
CTD:11100 GeneCards:GC19P041768 HGNC:HGNC:17011 MIM:605800
neXtProt:NX_Q9BUJ2 PharmGKB:PA162391519 eggNOG:NOG297571
HOVERGEN:HBG061101 InParanoid:Q9BUJ2 KO:K15047 OMA:SGPDGHY
OrthoDB:EOG4XWFXQ PhylomeDB:Q9BUJ2 ChiTaRS:HNRNPUL1
GenomeRNAi:11100 NextBio:42198 ArrayExpress:Q9BUJ2 Bgee:Q9BUJ2
CleanEx:HS_HNRNPUL1 Genevestigator:Q9BUJ2
GermOnline:ENSG00000105323 PANTHER:PTHR12381:SF10 Uniprot:Q9BUJ2
Length = 856
Score = 603 (217.3 bits), Expect = 1.1e-58, P = 1.1e-58
Identities = 147/376 (39%), Positives = 206/376 (54%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSG--LHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP 101
V ++ +CDL F + + +SSG L EGFAY WSGARA+ G+ G+ CF KI
Sbjct: 211 VAIDTYNCDLHFKVARD--RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEIS 268
Query: 102 VD-MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVG 160
V + T PD HV R+G S D +LGE S N+G+KF
Sbjct: 269 VKHLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAEN 326
Query: 161 DTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHIL 220
D I C D E + F KNGKW+G A F LG A++PH+L
Sbjct: 327 DVIGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALG-----------GQALYPHVL 373
Query: 221 LKNVVVVMQFS--VEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPAS 277
+KN V F E + G+ +++ L + G K +CE++MMVGLPA+
Sbjct: 374 VKNCAVEFNFGQRAEPYCSVLPGF-TFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAA 432
Query: 278 GKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLL 337
GKTTWA K +P K+Y +LGTN I+++M+V GL R+ NY+ R+ L+ +A + L+
Sbjct: 433 GKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLI 492
Query: 338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
A+R RN+I+DQTNV+ SA++RK+R F F++ A+V+ P EDLK R++KR E GK+
Sbjct: 493 QIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKD 552
Query: 398 VPADAVNNMLANYVLP 413
VP AV M AN+ LP
Sbjct: 553 VPDHAVLEMKANFTLP 568
>UNIPROTKB|A4FUC2 [details] [associations]
symbol:HNRNPUL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0019899 "enzyme binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0009615 "response to virus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR003034
InterPro:IPR003877 InterPro:IPR027025 Pfam:PF00622 Pfam:PF02037
PROSITE:PS50800 SMART:SM00513 GO:GO:0005634 GO:GO:0003676
GO:GO:0009615 GO:GO:0006396 InterPro:IPR008985 SUPFAM:SSF49899
Gene3D:1.10.720.30 InterPro:IPR001870 InterPro:IPR018355
SMART:SM00449 PROSITE:PS50188 CTD:11100 eggNOG:NOG297571
HOVERGEN:HBG061101 KO:K15047 OMA:SGPDGHY OrthoDB:EOG4XWFXQ
PANTHER:PTHR12381:SF10 GeneTree:ENSGT00390000020210
HOGENOM:HOG000253920 EMBL:DAAA02047108 EMBL:BC114691
IPI:IPI00709819 RefSeq:NP_001076935.1 UniGene:Bt.14321 SMR:A4FUC2
STRING:A4FUC2 Ensembl:ENSBTAT00000004114 GeneID:533197
KEGG:bta:533197 InParanoid:A4FUC2 NextBio:20875952 Uniprot:A4FUC2
Length = 858
Score = 603 (217.3 bits), Expect = 1.1e-58, P = 1.1e-58
Identities = 147/376 (39%), Positives = 206/376 (54%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSG--LHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP 101
V ++ +CDL F + + +SSG L EGFAY WSGARA+ G+ G+ CF KI
Sbjct: 212 VAIDTYNCDLHFKVARD--RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEIS 269
Query: 102 VD-MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVG 160
V + T PD HV R+G S D +LGE S N+G+KF
Sbjct: 270 VKHLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAEN 327
Query: 161 DTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHIL 220
D I C D E + F KNGKW+G A F LG A++PH+L
Sbjct: 328 DVIGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALG-----------GQALYPHVL 374
Query: 221 LKNVVVVMQFS--VEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPAS 277
+KN V F E + G+ +++ L + G K +CE++MMVGLPA+
Sbjct: 375 VKNCAVEFNFGQRAEPYCSVLPGF-TFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAA 433
Query: 278 GKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLL 337
GKTTWA K +P K+Y +LGTN I+++M+V GL R+ NY+ R+ L+ +A + L+
Sbjct: 434 GKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLI 493
Query: 338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
A+R RN+I+DQTNV+ SA++RK+R F F++ A+V+ P EDLK R++KR E GK+
Sbjct: 494 QIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKD 553
Query: 398 VPADAVNNMLANYVLP 413
VP AV M AN+ LP
Sbjct: 554 VPDHAVLEMKANFTLP 569
>MGI|MGI:2443517 [details] [associations]
symbol:Hnrnpul1 "heterogeneous nuclear ribonucleoprotein
U-like 1" species:10090 "Mus musculus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009615 "response to virus"
evidence=IEA] [GO:0019899 "enzyme binding" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR003034 InterPro:IPR003877 InterPro:IPR027025
Pfam:PF00622 Pfam:PF02037 PROSITE:PS50800 SMART:SM00513
MGI:MGI:2443517 GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0003723 GO:GO:0009615 GO:GO:0006396 InterPro:IPR008985
SUPFAM:SSF49899 Gene3D:1.10.720.30 GO:GO:0030529 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 CTD:11100
eggNOG:NOG297571 HOVERGEN:HBG061101 KO:K15047 OMA:SGPDGHY
OrthoDB:EOG4XWFXQ PANTHER:PTHR12381:SF10 EMBL:AK042090
EMBL:AK143666 EMBL:AK155604 EMBL:BC021506 EMBL:BC027844
EMBL:BC078642 IPI:IPI00123501 IPI:IPI00269280 IPI:IPI00742433
RefSeq:NP_659171.1 RefSeq:NP_835190.1 UniGene:Mm.254223
ProteinModelPortal:Q8VDM6 SMR:Q8VDM6 STRING:Q8VDM6
PhosphoSite:Q8VDM6 PaxDb:Q8VDM6 PRIDE:Q8VDM6
Ensembl:ENSMUST00000043765 Ensembl:ENSMUST00000108401 GeneID:232989
KEGG:mmu:232989 UCSC:uc009ftu.1 UCSC:uc009ftv.1 UCSC:uc009ftw.1
GeneTree:ENSGT00390000020210 HOGENOM:HOG000253920 InParanoid:Q8VDM6
NextBio:381431 Bgee:Q8VDM6 Genevestigator:Q8VDM6
GermOnline:ENSMUSG00000040725 Uniprot:Q8VDM6
Length = 859
Score = 603 (217.3 bits), Expect = 1.1e-58, P = 1.1e-58
Identities = 148/376 (39%), Positives = 206/376 (54%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSG--LHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP 101
V ++ +CDL F + + +SSG L EGFAY WSGARA+ G+ G+ CF KI
Sbjct: 212 VAIDTYNCDLHFKVARD--RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEIS 269
Query: 102 VD-MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVG 160
V + T PD HV R+G S D +LGE S N+G+KF
Sbjct: 270 VKHLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAEN 327
Query: 161 DTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHIL 220
D I C D E + F KNGKW+G A F LG A++PH+L
Sbjct: 328 DVIGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALG-----------GQALYPHVL 374
Query: 221 LKNVVVVMQFS--VEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPAS 277
+KN V F E + G+ +++ L + G K +CE++MMVGLPA+
Sbjct: 375 VKNCAVEFNFGQRAEPYCSVLPGF-TFIQHLPLSERIRGTIGPKSKAECEILMMVGLPAA 433
Query: 278 GKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLL 337
GKTTWA K +P K+Y +LGTN I+++M+V GL R+ NY+ R+ L+ +A + L+
Sbjct: 434 GKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLI 493
Query: 338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
A+R RN+I+DQTNV+ SA++RK+R F F++ A+V+ P EDLK R+VKR E GK+
Sbjct: 494 QIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTVKRTDEEGKD 553
Query: 398 VPADAVNNMLANYVLP 413
VP AV M AN+ LP
Sbjct: 554 VPDHAVLEMKANFTLP 569
>RGD|1307456 [details] [associations]
symbol:Hnrnpul1 "heterogeneous nuclear ribonucleoprotein U-like
1" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0009615 "response to
virus" evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA;ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR003034 InterPro:IPR003877 InterPro:IPR027025
Pfam:PF00622 Pfam:PF02037 PROSITE:PS50800 SMART:SM00513 RGD:1307456
GO:GO:0005634 GO:GO:0003676 GO:GO:0009615 GO:GO:0006396
InterPro:IPR008985 SUPFAM:SSF49899 Gene3D:1.10.720.30 GO:GO:0030529
InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
EMBL:CH473979 CTD:11100 KO:K15047 OMA:SGPDGHY OrthoDB:EOG4XWFXQ
PANTHER:PTHR12381:SF10 GeneTree:ENSGT00390000020210 IPI:IPI00365665
RefSeq:NP_001101947.1 UniGene:Rn.95170 Ensembl:ENSRNOT00000028100
GeneID:361522 KEGG:rno:361522 UCSC:RGD:1307456 NextBio:676592
Uniprot:D4A962
Length = 859
Score = 601 (216.6 bits), Expect = 2.0e-58, P = 2.0e-58
Identities = 147/376 (39%), Positives = 206/376 (54%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSG--LHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP 101
V ++ +CDL F + + +SSG L EGFAY WSGARA+ G+ G+ CF KI
Sbjct: 212 VAIDTYNCDLHFKVARD--RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEIS 269
Query: 102 VD-MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVG 160
V + T PD HV R+G S D +LGE S N+G+KF
Sbjct: 270 VKHLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAEN 327
Query: 161 DTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHIL 220
D I C D E + F KNGKW+G A F LG A++PH+L
Sbjct: 328 DVIGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALG-----------GQALYPHVL 374
Query: 221 LKNVVVVMQFS--VEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPAS 277
+KN V F E + G+ +++ L + G K +CE++MMVGLPA+
Sbjct: 375 VKNCAVEFNFGQRAEPYCSILPGF-TFIQHLPLSERIRGTIGPKSKAECEILMMVGLPAA 433
Query: 278 GKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLL 337
GKTTWA K +P K+Y +LGTN I+++M+V GL R+ NY+ R+ L+ +A + L+
Sbjct: 434 GKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLI 493
Query: 338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE 397
A+R RN+I+DQTNV+ SA++RK+R F F++ A+V+ P EDLK R++KR E GK+
Sbjct: 494 QIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKD 553
Query: 398 VPADAVNNMLANYVLP 413
VP AV M AN+ LP
Sbjct: 554 VPDHAVLEMKANFTLP 569
>ZFIN|ZDB-GENE-030131-6422 [details] [associations]
symbol:hnrnpub "heterogeneous nuclear
ribonucleoprotein Ub" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR003034 InterPro:IPR003877 InterPro:IPR026745
Pfam:PF00622 Pfam:PF02037 PROSITE:PS50800 SMART:SM00513
ZFIN:ZDB-GENE-030131-6422 GO:GO:0005634 GO:GO:0003676
InterPro:IPR008985 SUPFAM:SSF49899 Gene3D:1.10.720.30 GO:GO:0030529
InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
HOVERGEN:HBG061101 GeneTree:ENSGT00390000020210
HOGENOM:HOG000253920 KO:K12888 PANTHER:PTHR12381:SF11 EMBL:BX470246
IPI:IPI00481810 RefSeq:NP_001028767.2 UniGene:Dr.75178 SMR:Q5RHQ7
Ensembl:ENSDART00000122696 GeneID:334490 KEGG:dre:334490 CTD:334490
InParanoid:Q5RHQ7 Uniprot:Q5RHQ7
Length = 796
Score = 517 (187.1 bits), Expect = 1.4e-51, Sum P(2) = 1.4e-51
Identities = 130/377 (34%), Positives = 194/377 (51%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
V L+P +CDL F + N +S L E FA+ W+G RA+ G+N GK CF K+ P+
Sbjct: 205 VCLDPYNCDLHFKVSRNRYSASSLTMESFAHLWAGGRASYGVNKGKVCFEMKVTEKTPIK 264
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVGDTI 163
++ H +G S + + LGE E S ++GE F D I
Sbjct: 265 HLNSKIMDFHDVHIGWSLANGCLS-LGEEEFSYSYSDKGKKASNCVTEDYGEGFDENDVI 323
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C I+ E+ + I F+KNG N LGV KE + A+FPH+L N
Sbjct: 324 GCFINFEADEVE-ISFSKNG-------------NDLGVAFKVNKESLADRALFPHVLCHN 369
Query: 224 VVVVMQFSV-EQGLIP-VEGYKSWVSALDDGNSVLGPTF-CNMKDCEVMMMVGLPASGKT 280
V F E P +E + +++ + + GP KDCEV++MVGLP SGKT
Sbjct: 370 CTVEFNFGQNETPFFPKLEDF-TFMQQIPLEERIRGPKGPVAKKDCEVIVMVGLPGSGKT 428
Query: 281 TWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA 340
TW K V+++P K Y +L TN +LE++ + + R++ + + R L+ A
Sbjct: 429 TWVVKHVEENPGK-YNILSTNTVLEKLMINSVKRQNKDITKLMAISQRVPFYLGKLIEIA 487
Query: 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPA 400
+R R++I+DQTNV +A++RK+ LF F++ AVVVFP E+LK R+ K+ + GK++P
Sbjct: 488 ARKKRHYILDQTNVSSAAQRRKMCLFAGFQRKAVVVFPTDENLKERAQKKAEADGKDIPE 547
Query: 401 DAVNNMLANYVLPVNKD 417
A+ M A Y LP D
Sbjct: 548 HALLKMKALYTLPEQGD 564
Score = 44 (20.5 bits), Expect = 1.4e-51, Sum P(2) = 1.4e-51
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 12 DGDKPESVVKKAKVDDPVSDSSASGPRSQKQRV 44
+ D+ + ++ K V+D +D +S + K+ V
Sbjct: 131 EDDEEDDIIDKIDVEDGDADKDSSADQKNKKGV 163
>UNIPROTKB|F1Q3W0 [details] [associations]
symbol:HNRNPU "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR003877 InterPro:IPR026745 Pfam:PF00622 GO:GO:0005634
InterPro:IPR008985 SUPFAM:SSF49899 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
GeneTree:ENSGT00390000020210 OMA:PYPRAPV PANTHER:PTHR12381:SF11
EMBL:AAEX03005257 EMBL:AAEX03005258 Ensembl:ENSCAFT00000025085
Uniprot:F1Q3W0
Length = 783
Score = 516 (186.7 bits), Expect = 3.7e-51, Sum P(2) = 3.7e-51
Identities = 134/373 (35%), Positives = 192/373 (51%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
V L+ +CDL F I + L +S L E FA+ W+G RA+ G++ GK CF K+ PV
Sbjct: 246 VCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVR 305
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVGDTI 163
T H R+G S + LGE E S ++GEKF D I
Sbjct: 306 HLYTKDIDIHEVRIGWSLTTSGM-LLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVI 364
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C + ES + + +AKNG+ LG A + KE +FPH+L N
Sbjct: 365 TCFANFESDEVE-LSYAKNGQDLGVAFKIS-------------KEILAGRPLFPHVLCHN 410
Query: 224 VVVVMQFSV-EQGLIPV-EGYKSWVSALDDGNSVLGPTFCN-MKDCEVMMMVGLPASGKT 280
V F E+ P+ E Y +++ + + V GP KDCEV+MM+GLP +GKT
Sbjct: 411 CAVEFNFGQKEKPYFPIPEDY-TFIQNVPLEDRVRGPKGPEEKKDCEVVMMIGLPGAGKT 469
Query: 281 TWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA 340
TW K ++P K Y +LGTN I+++M V G ++ + + L+ RA + A
Sbjct: 470 TWVTKHAAENPGK-YNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQRAPQCLGKFIEIA 528
Query: 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPA 400
+R RNFI+DQTNV +A++RK+ LF F++ AVVV PK ED K R+ K+ + GK++P
Sbjct: 529 ARKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQKKAEVEGKDLPE 588
Query: 401 DAVNNMLANYVLP 413
AV M N+ LP
Sbjct: 589 HAVLKMKGNFTLP 601
Score = 40 (19.1 bits), Expect = 3.7e-51, Sum P(2) = 3.7e-51
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 43 RVVLNPADCDLDFDIEDNGLKSSGLHQE 70
R + P + LD + G +GL QE
Sbjct: 32 RPAMEPGNGSLDLGGDSAGRSGAGLEQE 59
>UNIPROTKB|Q00839 [details] [associations]
symbol:HNRNPU "Heterogeneous nuclear ribonucleoprotein U"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0009986 "cell surface" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
Reactome:REACT_71 InterPro:IPR003034 InterPro:IPR003877
InterPro:IPR026745 Pfam:PF00622 Pfam:PF02037 PROSITE:PS50800
SMART:SM00513 GO:GO:0005524 GO:GO:0005654 GO:GO:0009986
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0003723 InterPro:IPR008985
SUPFAM:SSF49899 Gene3D:1.10.720.30 GO:GO:0000398 GO:GO:0071013
InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
EMBL:BX323046 GO:GO:0070937 GO:GO:0070934 eggNOG:NOG297571
HOVERGEN:HBG061101 HOGENOM:HOG000253920 EMBL:X65488 EMBL:AF068846
EMBL:BC003367 EMBL:BC003621 EMBL:BC007950 EMBL:BC024767
EMBL:BC034925 IPI:IPI00479217 IPI:IPI00883857 PIR:S22765
RefSeq:NP_004492.2 RefSeq:NP_114032.2 UniGene:Hs.106212 PDB:1ZRJ
PDBsum:1ZRJ ProteinModelPortal:Q00839 SMR:Q00839 DIP:DIP-684N
IntAct:Q00839 MINT:MINT-1654412 STRING:Q00839 PhosphoSite:Q00839
DMDM:254763463 PaxDb:Q00839 PRIDE:Q00839 DNASU:3192
Ensembl:ENST00000283179 Ensembl:ENST00000444376 GeneID:3192
KEGG:hsa:3192 UCSC:uc001iaz.1 UCSC:uc001iba.1 CTD:3192
GeneCards:GC01M245013 HGNC:HGNC:5048 HPA:CAB011532 MIM:602869
neXtProt:NX_Q00839 PharmGKB:PA162391486 InParanoid:Q00839 KO:K12888
OMA:PYPRAPV ChiTaRS:HNRNPU EvolutionaryTrace:Q00839 GenomeRNAi:3192
NextBio:12700 ArrayExpress:Q00839 Bgee:Q00839 CleanEx:HS_HNRNPU
Genevestigator:Q00839 GermOnline:ENSG00000153187
PANTHER:PTHR12381:SF11 Uniprot:Q00839
Length = 825
Score = 516 (186.7 bits), Expect = 5.2e-51, Sum P(2) = 5.2e-51
Identities = 132/372 (35%), Positives = 190/372 (51%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
V L+ +CDL F I + L +S L E FA+ W+G RA+ G++ GK CF K+ PV
Sbjct: 288 VCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVR 347
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVGDTI 163
T H R+G S + LGE E S ++GEKF D I
Sbjct: 348 HLYTKDIDIHEVRIGWSLTTSGM-LLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVI 406
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C + ES + + +AKNG+ LG A + KE +FPH+L N
Sbjct: 407 TCFANFESDEVE-LSYAKNGQDLGVAFKIS-------------KEVLAGRPLFPHVLCHN 452
Query: 224 VVVVMQFSV-EQGLIPVEGYKSWVSALDDGNSVLGPTFCN-MKDCEVMMMVGLPASGKTT 281
V F E+ P+ +++ + + V GP KDCEV+MM+GLP +GKTT
Sbjct: 453 CAVEFNFGQKEKPYFPIPEEYTFIQNVPLEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTT 512
Query: 282 WAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341
W K ++P K Y +LGTN I+++M V G ++ + + L+ RA + A+
Sbjct: 513 WVTKHAAENPGK-YNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQRAPQCLGKFIEIAA 571
Query: 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPAD 401
R RNFI+DQTNV +A++RK+ LF F++ AVVV PK ED K R+ K+ + GK++P
Sbjct: 572 RKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQKKAEVEGKDLPEH 631
Query: 402 AVNNMLANYVLP 413
AV M N+ LP
Sbjct: 632 AVLKMKGNFTLP 643
Score = 42 (19.8 bits), Expect = 5.2e-51, Sum P(2) = 5.2e-51
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 43 RVVLNPADCDLDFDIEDNGLKSSGLHQEGFA 73
R + P + LD + G +GL QE A
Sbjct: 50 RPAMEPGNGSLDLGGDSAGRSGAGLEQEAAA 80
>RGD|620372 [details] [associations]
symbol:Hnrnpu "heterogeneous nuclear ribonucleoprotein U"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005215 "transporter activity"
evidence=NAS] [GO:0006810 "transport" evidence=NAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0070934 "CRD-mediated
mRNA stabilization" evidence=IEA;ISO] [GO:0070937 "CRD-mediated
mRNA stability complex" evidence=IEA;ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IEA;ISO] InterPro:IPR003034
InterPro:IPR003877 InterPro:IPR026745 Pfam:PF00622 Pfam:PF02037
PROSITE:PS50800 SMART:SM00513 RGD:620372 GO:GO:0003676
GO:GO:0005215 InterPro:IPR008985 SUPFAM:SSF49899 Gene3D:1.10.720.30
GO:GO:0071013 InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449
PROSITE:PS50188 GO:GO:0070937 GO:GO:0070934 EMBL:CH473985
HOVERGEN:HBG061101 GeneTree:ENSGT00390000020210 CTD:3192 KO:K12888
PANTHER:PTHR12381:SF11 EMBL:BC072529 IPI:IPI00210090
RefSeq:NP_476480.2 UniGene:Rn.4328 SMR:Q6IMY8 IntAct:Q6IMY8
STRING:Q6IMY8 Ensembl:ENSRNOT00000044477 GeneID:117280
KEGG:rno:117280 NextBio:620231 Genevestigator:Q6IMY8 Uniprot:Q6IMY8
Length = 798
Score = 515 (186.3 bits), Expect = 6.7e-51, Sum P(2) = 6.7e-51
Identities = 131/372 (35%), Positives = 191/372 (51%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
V L+ +CDL F I + L +S L E FA+ W+G RA+ G++ GK CF K+ PV
Sbjct: 262 VCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVR 321
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVGDTI 163
T H R+G S + LGE E S ++GEKF D I
Sbjct: 322 HLYTKDIDIHEVRIGWSLTTSGM-LLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVI 380
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C + E+ + + +AKNG+ LG A + KE + +FPH+L N
Sbjct: 381 TCFANFETDEVE-LSYAKNGQDLGVAFKIS-------------KEVLADRPLFPHVLCHN 426
Query: 224 VVVVMQFSV-EQGLIPVEGYKSWVSALDDGNSVLGPTFCN-MKDCEVMMMVGLPASGKTT 281
V F E+ P+ +++ + + V GP KDCEV+MM+GLP +GKTT
Sbjct: 427 CAVEFNFGQKEKPYFPIPEDCTFIQNVPLEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTT 486
Query: 282 WAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341
W K ++P K Y +LGTN I+++M V G ++ + + L+ RA + A+
Sbjct: 487 WVTKHAAENPGK-YNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQRAPQCLGKFIEIAA 545
Query: 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPAD 401
R RNFI+DQTNV +A++RK+ LF F++ AVVV PK ED K R+ K+ + GK++P
Sbjct: 546 RKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQKKAEVEGKDLPEH 605
Query: 402 AVNNMLANYVLP 413
AV M N+ LP
Sbjct: 606 AVLKMKGNFTLP 617
Score = 40 (19.1 bits), Expect = 6.7e-51, Sum P(2) = 6.7e-51
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 43 RVVLNPADCDLDFDIEDNGLKSSGLHQEGFA 73
R + P + LD + G +GL QE A
Sbjct: 49 RPAMEPGNGSLDLGGDAAGRSGAGLEQEAAA 79
>MGI|MGI:1858195 [details] [associations]
symbol:Hnrnpu "heterogeneous nuclear ribonucleoprotein U"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0070934 "CRD-mediated
mRNA stabilization" evidence=ISO] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR003034 InterPro:IPR003877
InterPro:IPR026745 Pfam:PF00622 Pfam:PF02037 PROSITE:PS50800
SMART:SM00513 MGI:MGI:1858195 GO:GO:0005524 GO:GO:0009986
GO:GO:0008380 GO:GO:0003677 GO:GO:0006397 GO:GO:0003723
InterPro:IPR008985 SUPFAM:SSF49899 Gene3D:1.10.720.30 GO:GO:0071013
InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
GO:GO:0070937 GO:GO:0070934 EMBL:CH466555 eggNOG:NOG297571
GeneTree:ENSGT00390000020210 HOGENOM:HOG000253920 CTD:3192
KO:K12888 OMA:PYPRAPV ChiTaRS:HNRNPU PANTHER:PTHR12381:SF11
EMBL:AK165844 EMBL:BC018353 IPI:IPI00458583 RefSeq:NP_058085.2
UniGene:Mm.482674 UniGene:Mm.86589 HSSP:Q00839
ProteinModelPortal:Q8VEK3 SMR:Q8VEK3 IntAct:Q8VEK3 STRING:Q8VEK3
PhosphoSite:Q8VEK3 PaxDb:Q8VEK3 PRIDE:Q8VEK3
Ensembl:ENSMUST00000037748 GeneID:51810 KEGG:mmu:51810
UCSC:uc011wxl.1 InParanoid:Q8VEK3 OrthoDB:EOG447FSZ NextBio:308060
Bgee:Q8VEK3 Uniprot:Q8VEK3
Length = 800
Score = 515 (186.3 bits), Expect = 7.0e-51, Sum P(2) = 7.0e-51
Identities = 131/372 (35%), Positives = 191/372 (51%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
V L+ +CDL F I + L +S L E FA+ W+G RA+ G++ GK CF K+ PV
Sbjct: 264 VCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVR 323
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVGDTI 163
T H R+G S + LGE E S ++GEKF D I
Sbjct: 324 HLYTKDIDIHEVRIGWSLTTSGM-LLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVI 382
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C + E+ + + +AKNG+ LG A + KE + +FPH+L N
Sbjct: 383 TCFANFETDEVE-LSYAKNGQDLGVAFKIS-------------KEVLADRPLFPHVLCHN 428
Query: 224 VVVVMQFSV-EQGLIPVEGYKSWVSALDDGNSVLGPTFCN-MKDCEVMMMVGLPASGKTT 281
V F E+ P+ +++ + + V GP KDCEV+MM+GLP +GKTT
Sbjct: 429 CAVEFNFGQKEKPYFPIPEDCTFIQNVPLEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTT 488
Query: 282 WAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341
W K ++P K Y +LGTN I+++M V G ++ + + L+ RA + A+
Sbjct: 489 WVTKHAAENPGK-YNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQRAPQCLGKFIEIAA 547
Query: 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPAD 401
R RNFI+DQTNV +A++RK+ LF F++ AVVV PK ED K R+ K+ + GK++P
Sbjct: 548 RKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQKKAEVEGKDLPEH 607
Query: 402 AVNNMLANYVLP 413
AV M N+ LP
Sbjct: 608 AVLKMKGNFTLP 619
Score = 40 (19.1 bits), Expect = 7.0e-51, Sum P(2) = 7.0e-51
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 43 RVVLNPADCDLDFDIEDNGLKSSGLHQEGFA 73
R + P + LD + G +GL QE A
Sbjct: 49 RPAMEPGNGSLDLGGDAAGRSGAGLEQEAAA 79
>UNIPROTKB|F1S8L9 [details] [associations]
symbol:HNRNPU "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=IEA]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR003034
InterPro:IPR003877 InterPro:IPR026745 Pfam:PF00622 Pfam:PF02037
PROSITE:PS50800 SMART:SM00513 GO:GO:0003676 InterPro:IPR008985
SUPFAM:SSF49899 Gene3D:1.10.720.30 GO:GO:0071013 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 GO:GO:0070937
GO:GO:0070934 GeneTree:ENSGT00390000020210 OMA:PYPRAPV
PANTHER:PTHR12381:SF11 EMBL:CU915438 Ensembl:ENSSSCT00000011900
Uniprot:F1S8L9
Length = 789
Score = 522 (188.8 bits), Expect = 8.7e-50, P = 8.7e-50
Identities = 133/372 (35%), Positives = 191/372 (51%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
V L+ +CDL F I + L +S L E FA+ W+G RA+ G++ GK CF K+ PV
Sbjct: 269 VCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVR 328
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVGDTI 163
T H R+G S + LGE E S ++GEKF D I
Sbjct: 329 HLYTKDIDIHEVRIGWSLTTSGM-LLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVI 387
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C + ES + + +AKNG+ LG A + KE E +FPH+L N
Sbjct: 388 TCFANFESDEVE-LSYAKNGQDLGIAFKIS-------------KEVLAERPLFPHVLCHN 433
Query: 224 VVVVMQFSV-EQGLIPVEGYKSWVSALDDGNSVLGPTFCN-MKDCEVMMMVGLPASGKTT 281
V F E+ P+ +++ + + V GP KDCEV+MM+GLP +GKTT
Sbjct: 434 CAVEFNFGQKEKPYFPIPEEYTFIQNVPLEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTT 493
Query: 282 WAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341
W K ++P K Y +LGTN I+++M V G ++ + + L+ RA + A+
Sbjct: 494 WVTKHAAENPGK-YNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQRAPQCLGKFIEIAA 552
Query: 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPAD 401
R RNFI+DQTNV +A++RK+ LF F++ AVVV PK ED K R+ K+ + GK++P
Sbjct: 553 RKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQKKAEVEGKDLPEH 612
Query: 402 AVNNMLANYVLP 413
AV M N+ LP
Sbjct: 613 AVLKMKGNFTLP 624
>UNIPROTKB|J9P6J3 [details] [associations]
symbol:HNRNPU "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR003877 InterPro:IPR026745 Pfam:PF00622 GO:GO:0005634
InterPro:IPR008985 SUPFAM:SSF49899 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
GeneTree:ENSGT00390000020210 PANTHER:PTHR12381:SF11
EMBL:AAEX03005257 EMBL:AAEX03005258 Ensembl:ENSCAFT00000043229
Uniprot:J9P6J3
Length = 702
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 134/373 (35%), Positives = 192/373 (51%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
V L+ +CDL F I + L +S L E FA+ W+G RA+ G++ GK CF K+ PV
Sbjct: 166 VCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVR 225
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVGDTI 163
T H R+G S + LGE E S ++GEKF D I
Sbjct: 226 HLYTKDIDIHEVRIGWSLTTSGM-LLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVI 284
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C + ES + + +AKNG+ LG A + KE +FPH+L N
Sbjct: 285 TCFANFESDEVE-LSYAKNGQDLGVAFKIS-------------KEILAGRPLFPHVLCHN 330
Query: 224 VVVVMQFSV-EQGLIPV-EGYKSWVSALDDGNSVLGPTFCN-MKDCEVMMMVGLPASGKT 280
V F E+ P+ E Y +++ + + V GP KDCEV+MM+GLP +GKT
Sbjct: 331 CAVEFNFGQKEKPYFPIPEDY-TFIQNVPLEDRVRGPKGPEEKKDCEVVMMIGLPGAGKT 389
Query: 281 TWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA 340
TW K ++P K Y +LGTN I+++M V G ++ + + L+ RA + A
Sbjct: 390 TWVTKHAAENPGK-YNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQRAPQCLGKFIEIA 448
Query: 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPA 400
+R RNFI+DQTNV +A++RK+ LF F++ AVVV PK ED K R+ K+ + GK++P
Sbjct: 449 ARKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQKKAEVEGKDLPE 508
Query: 401 DAVNNMLANYVLP 413
AV M N+ LP
Sbjct: 509 HAVLKMKGNFTLP 521
>UNIPROTKB|F1MFT4 [details] [associations]
symbol:HNRNPU "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=IEA]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR003877 InterPro:IPR026745 Pfam:PF00622
InterPro:IPR008985 SUPFAM:SSF49899 GO:GO:0071013 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 GO:GO:0070937
GO:GO:0070934 GeneTree:ENSGT00390000020210 OMA:PYPRAPV
PANTHER:PTHR12381:SF11 EMBL:DAAA02042728 EMBL:DAAA02042729
IPI:IPI00688257 Ensembl:ENSBTAT00000052059 ArrayExpress:F1MFT4
Uniprot:F1MFT4
Length = 701
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 134/373 (35%), Positives = 192/373 (51%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
V L+ +CDL F I + L +S L E FA+ W+G RA+ G++ GK CF K+ PV
Sbjct: 164 VCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVR 223
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVGDTI 163
T H R+G S + LGE E S ++GEKF D I
Sbjct: 224 HLYTKDIDIHEVRIGWSLTTSGM-LLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVI 282
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C + ES + + +AKNG+ LG A + KE +FPH+L N
Sbjct: 283 TCFANFESDEVE-LSYAKNGQDLGIAFKIS-------------KEVLAGRPLFPHVLCHN 328
Query: 224 VVVVMQFSV-EQGLIPV-EGYKSWVSALDDGNSVLGPTFCN-MKDCEVMMMVGLPASGKT 280
V F E+ P+ E Y +++ + + V GP KDCEV+MM+GLP +GKT
Sbjct: 329 CAVEFNFGQKEKPYFPIPEDY-TFIQNVPLEDRVRGPKGPEEKKDCEVVMMIGLPGAGKT 387
Query: 281 TWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA 340
TW K ++P K Y +LGTN I+++M V G ++ + + L+ RA + A
Sbjct: 388 TWVTKHAAENPGK-YNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQRAPQCLGKFIEIA 446
Query: 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPA 400
+R RNFI+DQTNV +A++RK+ LF F++ AVVV PK ED K R+ K+ + GK++P
Sbjct: 447 ARKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQKKAEVEGKDLPE 506
Query: 401 DAVNNMLANYVLP 413
AV M N+ LP
Sbjct: 507 HAVLKMKGNFTLP 519
>UNIPROTKB|F1NSP8 [details] [associations]
symbol:HNRNPU "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR003877 InterPro:IPR026745 Pfam:PF00622
InterPro:IPR008985 SUPFAM:SSF49899 GO:GO:0071013 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 GO:GO:0070937
GO:GO:0070934 GeneTree:ENSGT00390000020210 OMA:PYPRAPV
PANTHER:PTHR12381:SF11 EMBL:AADN02011778 EMBL:AADN02011777
IPI:IPI00823227 Ensembl:ENSGALT00000017361 Uniprot:F1NSP8
Length = 633
Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 132/372 (35%), Positives = 188/372 (50%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
V L+ +CDL F I + +S L E FA+ W+G RA+ G++ GK CF K+ PV
Sbjct: 95 VCLDTYNCDLHFKISRDRFSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVK 154
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVGDTI 163
T H RVG S + LGE E S +FGEKF D I
Sbjct: 155 HLYTKDIDIHEVRVGWSLNTSGM-LLGEEEFSYGYSLKGIKTCNCETEDFGEKFDENDVI 213
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C + + + + ++KNG+ LG A F V+D +FPH+L N
Sbjct: 214 GCFANFDGDEVE-LSYSKNGQELGVA--FKISKE---VLDGR--------PLFPHVLCHN 259
Query: 224 VVVVMQFSV-EQGLIPVEGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPASGKTT 281
V F ++ PV +++ + + V GP K DCEV+MM+GLP +GKTT
Sbjct: 260 CAVEFNFGQKDEPYFPVPEEYTFIQKVPLEDRVRGPKGPEQKKDCEVVMMIGLPGAGKTT 319
Query: 282 WAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341
W K +P K Y +LGTN I+++M V G R+ + + L+ RA + A+
Sbjct: 320 WVTKHAAANPGK-YNILGTNTIMDKMMVAGFKRQMADTGKLNTLLQRAPQCLGKFIEIAA 378
Query: 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPAD 401
R RNFI+DQTNV +A++RK+ LF F++ AVVV PK ED K R+ K+ + GK++P
Sbjct: 379 RKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQKKAEVEGKDLPEH 438
Query: 402 AVNNMLANYVLP 413
AV M N+ LP
Sbjct: 439 AVLKMKGNFTLP 450
>UNIPROTKB|F1NM96 [details] [associations]
symbol:HNRNPU "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR003877 InterPro:IPR026745 Pfam:PF00622 GO:GO:0005634
InterPro:IPR008985 SUPFAM:SSF49899 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
GeneTree:ENSGT00390000020210 PANTHER:PTHR12381:SF11
EMBL:AADN02011778 EMBL:AADN02011777 IPI:IPI00578390
Ensembl:ENSGALT00000031877 Uniprot:F1NM96
Length = 602
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 132/374 (35%), Positives = 189/374 (50%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
V L+ +CDL F I + +S L E FA+ W+G RA+ G++ GK CF K+ PV
Sbjct: 62 VCLDTYNCDLHFKISRDRFSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVK 121
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVGDTI 163
T H RVG S + LGE E S +FGEKF D I
Sbjct: 122 HLYTKDIDIHEVRVGWSLNTSGM-LLGEEEFSYGYSLKGIKTCNCETEDFGEKFDENDVI 180
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C + + + + ++KNG+ LG A F V+D +FPH+L N
Sbjct: 181 GCFANFDGDEVE-LSYSKNGQELGVA--FKISKE---VLDGR--------PLFPHVLCHN 226
Query: 224 VVVVMQFSV-EQGLIPVEGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVGLPASGKTT 281
V F ++ PV +++ + + V GP K DCEV+MM+GLP +GKTT
Sbjct: 227 CAVEFNFGQKDEPYFPVPEEYTFIQKVPLEDRVRGPKGPEQKKDCEVVMMIGLPGAGKTT 286
Query: 282 WAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341
W K +P K Y +LGTN I+++M V G R+ + + L+ RA + A+
Sbjct: 287 WVTKHAAANPGK-YNILGTNTIMDKMMVAGFKRQMADTGKLNTLLQRAPQCLGKFIEIAA 345
Query: 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPAD 401
R RNFI+DQTNV +A++RK+ LF F++ AVVV PK ED K R+ K+ + GK++P
Sbjct: 346 RKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQKKAEVEGKDLPEH 405
Query: 402 AVNNM--LANYVLP 413
AV M + N+ LP
Sbjct: 406 AVLKMKVIGNFTLP 419
>UNIPROTKB|F1P8K1 [details] [associations]
symbol:HNRNPUL2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR003034
InterPro:IPR003877 InterPro:IPR027026 Pfam:PF00622 Pfam:PF02037
PROSITE:PS50800 SMART:SM00513 GO:GO:0005634 GO:GO:0003676
InterPro:IPR008985 SUPFAM:SSF49899 Gene3D:1.10.720.30
InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
GeneTree:ENSGT00390000020210 CTD:221092 PANTHER:PTHR12381:SF12
EMBL:AAEX03011663 RefSeq:XP_533261.3 Ensembl:ENSCAFT00000024843
GeneID:476053 KEGG:cfa:476053 Uniprot:F1P8K1
Length = 748
Score = 480 (174.0 bits), Expect = 2.9e-45, P = 2.9e-45
Identities = 132/394 (33%), Positives = 194/394 (49%)
Query: 28 PVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGING 87
P + A + V L+ DL F + + L E F WSGAR+ G+
Sbjct: 231 PPPEEEAKEEEEDETLVNLDTYTSDLHFQVSKDRYGGQPLFSEKFPTLWSGARSTYGVTK 290
Query: 88 GKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXX 147
GK CF K+ TQ + M++ + + RVG S D +LGE E S
Sbjct: 291 GKVCFEAKV--TQNLPMKEGCTEVS-LLRVGWSV-DFSHPQLGEDEFSYGFDGRGLKAEN 346
Query: 148 XXXLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVK 207
FG+ FG D I C + E++ + + F+KNG+ LG A + + K
Sbjct: 347 GQFEEFGQTFGENDVIGCFANFETEEIE-LSFSKNGEDLGVAFRIN-------------K 392
Query: 208 ERQCESAVFPHILLKNVVVVMQFSV-EQGLIPVEGYKSWVSAL---DDGNSVLGPTFCNM 263
E + A+ PH+L KN VV + F E+ P ++ A+ + + + P +
Sbjct: 393 ESLADRALLPHVLCKNCVVELNFGQKEEPFFPPPEEFMFIHAVPVEERVRTAIPPK--TI 450
Query: 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQ 323
++CEV++MVGLP SGKT WA K+ K++PEKRY +LG ++L QM++ GL +
Sbjct: 451 EECEVILMVGLPGSGKTQWALKYAKENPEKRYNVLGAEIVLNQMRMKGLEEPEMDPKSRD 510
Query: 324 CLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDL 383
L+ +A+ L+ ASRT RNFI+DQ NV+ S ++RKL LF F + VVV P ED
Sbjct: 511 LLVQQASQCLSKLVQIASRTKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDW 570
Query: 384 KIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKD 417
K R R + G +VP + M AN+ LP D
Sbjct: 571 KKRLELRKEVEGDDVPESIMLEMKANFSLPEKCD 604
>UNIPROTKB|J9PAS2 [details] [associations]
symbol:HNRNPUL2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR003034
InterPro:IPR003877 InterPro:IPR027026 Pfam:PF00622 Pfam:PF02037
PROSITE:PS50800 SMART:SM00513 GO:GO:0005634 GO:GO:0003676
InterPro:IPR008985 SUPFAM:SSF49899 Gene3D:1.10.720.30
InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
GeneTree:ENSGT00390000020210 OMA:DYEYNRY PANTHER:PTHR12381:SF12
EMBL:AAEX03011663 Ensembl:ENSCAFT00000044418 Uniprot:J9PAS2
Length = 762
Score = 480 (174.0 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 132/394 (33%), Positives = 194/394 (49%)
Query: 28 PVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGING 87
P + A + V L+ DL F + + L E F WSGAR+ G+
Sbjct: 231 PPPEEEAKEEEEDETLVNLDTYTSDLHFQVSKDRYGGQPLFSEKFPTLWSGARSTYGVTK 290
Query: 88 GKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXX 147
GK CF K+ TQ + M++ + + RVG S D +LGE E S
Sbjct: 291 GKVCFEAKV--TQNLPMKEGCTEVS-LLRVGWSV-DFSHPQLGEDEFSYGFDGRGLKAEN 346
Query: 148 XXXLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVK 207
FG+ FG D I C + E++ + + F+KNG+ LG A + + K
Sbjct: 347 GQFEEFGQTFGENDVIGCFANFETEEIE-LSFSKNGEDLGVAFRIN-------------K 392
Query: 208 ERQCESAVFPHILLKNVVVVMQFSV-EQGLIPVEGYKSWVSAL---DDGNSVLGPTFCNM 263
E + A+ PH+L KN VV + F E+ P ++ A+ + + + P +
Sbjct: 393 ESLADRALLPHVLCKNCVVELNFGQKEEPFFPPPEEFMFIHAVPVEERVRTAIPPK--TI 450
Query: 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQ 323
++CEV++MVGLP SGKT WA K+ K++PEKRY +LG ++L QM++ GL +
Sbjct: 451 EECEVILMVGLPGSGKTQWALKYAKENPEKRYNVLGAEIVLNQMRMKGLEEPEMDPKSRD 510
Query: 324 CLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDL 383
L+ +A+ L+ ASRT RNFI+DQ NV+ S ++RKL LF F + VVV P ED
Sbjct: 511 LLVQQASQCLSKLVQIASRTKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDW 570
Query: 384 KIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKD 417
K R R + G +VP + M AN+ LP D
Sbjct: 571 KKRLELRKEVEGDDVPESIMLEMKANFSLPEKCD 604
>MGI|MGI:1915943 [details] [associations]
symbol:Hnrnpul2 "heterogeneous nuclear ribonucleoprotein
U-like 2" species:10090 "Mus musculus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003034
InterPro:IPR003877 InterPro:IPR027026 Pfam:PF00622 Pfam:PF02037
PROSITE:PS50800 SMART:SM00513 MGI:MGI:1915943 GO:GO:0005634
GO:GO:0003676 InterPro:IPR008985 SUPFAM:SSF49899 Gene3D:1.10.720.30
InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
eggNOG:NOG297571 HOVERGEN:HBG061101 GeneTree:ENSGT00390000020210
HOGENOM:HOG000253920 CTD:221092 OMA:DYEYNRY OrthoDB:EOG4N30NM
PANTHER:PTHR12381:SF12 EMBL:DQ000354 EMBL:AC129217 IPI:IPI00222208
IPI:IPI01027807 RefSeq:NP_001074665.1 UniGene:Mm.476519
ProteinModelPortal:Q00PI9 PhosphoSite:Q00PI9 PaxDb:Q00PI9
PRIDE:Q00PI9 Ensembl:ENSMUST00000096753 GeneID:68693 KEGG:mmu:68693
UCSC:uc008gng.1 InParanoid:Q00PI9 NextBio:327706
Genevestigator:Q00PI9 Uniprot:Q00PI9
Length = 745
Score = 475 (172.3 bits), Expect = 1.0e-44, P = 1.0e-44
Identities = 132/394 (33%), Positives = 192/394 (48%)
Query: 28 PVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGING 87
P + A + V L+ DL F I + L E F WSGAR+ G+
Sbjct: 228 PPPEEEAKDEEEDQTLVNLDTYTSDLHFQISKDRYGGQPLFSEKFPTLWSGARSTYGVTK 287
Query: 88 GKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXX 147
GK CF K+ TQ + M++ + + RVG S D +LGE E S
Sbjct: 288 GKVCFEAKV--TQNLPMKEGCTEVS-LLRVGWSV-DFSCSQLGEDEFSYGFDGRGLKAEN 343
Query: 148 XXXLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVK 207
FG+ FG D I C + E++ + + F+KNG+ LG A + K
Sbjct: 344 GQFEEFGQTFGENDVIGCFANFETEEVE-LSFSKNGEDLGVAFRIS-------------K 389
Query: 208 ERQCESAVFPHILLKNVVVVMQFSV-EQGLIPVEGYKSWVSAL---DDGNSVLGPTFCNM 263
E + A+ PH+L KN VV + F E+ P ++ A+ + + + P +
Sbjct: 390 ESLADRALLPHVLCKNCVVELNFGQKEEPFFPPPEEFVFIHAVPVEERVRTAVPPK--TI 447
Query: 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQ 323
++CEV++MVGLP SGKT WA K+ KD+PE+RY +LG +L QM++ GL +
Sbjct: 448 EECEVILMVGLPGSGKTQWALKYAKDNPERRYNVLGAETVLTQMRMKGLEEPEMDPKSRD 507
Query: 324 CLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDL 383
L+ +A+ L+ ASR+ RNFI+DQ NV+ S ++RKL LF F + VVV P ED
Sbjct: 508 LLVQQASQCLSKLVQIASRSKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDW 567
Query: 384 KIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKD 417
K R R + G +VP + M AN+ LP D
Sbjct: 568 KRRLELRKEVEGDDVPESIMLEMKANFSLPEKCD 601
>ZFIN|ZDB-GENE-030131-3731 [details] [associations]
symbol:hnrnpua "heterogeneous nuclear
ribonucleoprotein Ua" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003034 InterPro:IPR003877
InterPro:IPR026745 Pfam:PF00622 Pfam:PF02037 PROSITE:PS50800
SMART:SM00513 ZFIN:ZDB-GENE-030131-3731 GO:GO:0005634 GO:GO:0003676
InterPro:IPR008985 SUPFAM:SSF49899 Gene3D:1.10.720.30
InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
GeneTree:ENSGT00390000020210 KO:K12888 PANTHER:PTHR12381:SF11
EMBL:CU076099 IPI:IPI00495050 RefSeq:XP_694691.5 UniGene:Dr.155863
UniGene:Dr.77064 Ensembl:ENSDART00000020598 GeneID:566326
KEGG:dre:566326 CTD:566326 NextBio:20888130 Uniprot:E7F3J2
Length = 760
Score = 475 (172.3 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 126/377 (33%), Positives = 187/377 (49%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
V L+ +CDL F + + +S L E FAY W+G R + G++ GK CF K++ PV
Sbjct: 197 VCLDTYNCDLHFKVSRDRYSASSLTMESFAYLWAGGRGSYGVDKGKACFEMKVIEKIPVK 256
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVGDTI 163
+ + H VG S + LGE S ++GE F D +
Sbjct: 257 HISSKGIEDHDVLVGWSLANSSY-LLGEEAYSYAFSMTAKKTSNAVTEDYGETFDENDVV 315
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C I+ + + I F+KNG+ LG K F + L K + +FPH+L N
Sbjct: 316 GCFINFDGAEVE-ISFSKNGEDLG--KAFTVSKDEL-------KGKP----LFPHVLCHN 361
Query: 224 VVVVMQFSVEQG--LIPVEGYKSWVSALDDGNSVLGPTFC-NMKDCEVMMMVGLPASGKT 280
V F ++ +G+ + + + + + GP N KDCEV+++VGLP SGKT
Sbjct: 362 CAVEFNFGQQESPFFAQPDGF-TLLQQIPVHDRIRGPKGPENKKDCEVIVVVGLPGSGKT 420
Query: 281 TWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA 340
W K + +P K Y +LGT+ ILE+M + L R+ + + RA + A
Sbjct: 421 EWVTKHTEANPGK-YNILGTDTILEKMMISTLKRQMKDVTKLLEISLRAPLFLGKFIEIA 479
Query: 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPA 400
+R RN+I+DQTNV SARKRK+ LF F++ AVVV P E+ K R++K+ + GK+VP
Sbjct: 480 ARKKRNYILDQTNVSASARKRKMCLFAGFQRKAVVVCPTDEEYKKRTLKKAETDGKKVPE 539
Query: 401 DAVNNMLANYVLPVNKD 417
A+ Y LPV D
Sbjct: 540 QAIRKTKRIYSLPVEGD 556
>UNIPROTKB|E1BNQ9 [details] [associations]
symbol:HNRNPUL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR003034 InterPro:IPR003877
InterPro:IPR027026 Pfam:PF00622 Pfam:PF02037 PROSITE:PS50800
SMART:SM00513 GO:GO:0005634 GO:GO:0003676 InterPro:IPR008985
SUPFAM:SSF49899 Gene3D:1.10.720.30 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
GeneTree:ENSGT00390000020210 CTD:221092 OMA:DYEYNRY
PANTHER:PTHR12381:SF12 EMBL:DAAA02063486 IPI:IPI00700324
RefSeq:NP_001193174.1 UniGene:Bt.7899 Ensembl:ENSBTAT00000003261
GeneID:616476 KEGG:bta:616476 NextBio:20900148 Uniprot:E1BNQ9
Length = 749
Score = 472 (171.2 bits), Expect = 2.3e-44, P = 2.3e-44
Identities = 131/378 (34%), Positives = 189/378 (50%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
V L+ DL F + + L E F WSGAR+ G+ GK CF K+ TQ +
Sbjct: 247 VNLDTYTSDLHFQVSKDRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCFEAKV--TQNLP 304
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVGDTI 163
M++ + + RVG S D +LGE E S FG+ FG D I
Sbjct: 305 MKEGCTEVS-LLRVGWSV-DFSHPQLGEDEFSYGFDGRGLKAENGQFEEFGQTFGENDVI 362
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C + E++ + + F+KNG+ LG A + KE + A+ PH+L KN
Sbjct: 363 GCFANFEAEEVE-LSFSKNGEDLGVAFRIS-------------KESLADRALLPHVLCKN 408
Query: 224 VVVVMQFSV-EQGLIPVEGYKSWVSAL---DDGNSVLGPTFCNMKDCEVMMMVGLPASGK 279
VV + F E+ P ++ A+ + + + P +++CEV++MVGLPASGK
Sbjct: 409 CVVELNFGQKEEPFFPPPEEFVFIHAVPVEERVRTAVPPK--TIEECEVILMVGLPASGK 466
Query: 280 TTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSR 339
T WA K+ K++PEKRY +LG +L QM++ GL + L+ +A+ L+
Sbjct: 467 TQWALKYAKENPEKRYNVLGAETVLNQMRMKGLEEPEMDPKSRDLLVQQASQCLSKLVQI 526
Query: 340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVP 399
ASRT RNFI+DQ NV+ S ++RKL LF F + VVV P ED K R R + G +VP
Sbjct: 527 ASRTKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDWKKRLELRKEVEGDDVP 586
Query: 400 ADAVNNMLANYVLPVNKD 417
+ M AN+ LP D
Sbjct: 587 ESIMLEMKANFSLPEKCD 604
>RGD|1562784 [details] [associations]
symbol:Hnrnpul2 "heterogeneous nuclear ribonucleoprotein U-like
2" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
InterPro:IPR003034 InterPro:IPR003877 InterPro:IPR027026
Pfam:PF00622 Pfam:PF02037 PROSITE:PS50800 SMART:SM00513 RGD:1562784
GO:GO:0005634 GO:GO:0003676 InterPro:IPR008985 SUPFAM:SSF49899
Gene3D:1.10.720.30 InterPro:IPR001870 InterPro:IPR018355
SMART:SM00449 PROSITE:PS50188 GeneTree:ENSGT00390000020210
CTD:221092 OrthoDB:EOG4N30NM PANTHER:PTHR12381:SF12 IPI:IPI00360386
RefSeq:XP_001073417.2 RefSeq:XP_219560.5 PhosphoSite:D4ABT8
PRIDE:D4ABT8 Ensembl:ENSRNOT00000026416 GeneID:309197
KEGG:rno:309197 UCSC:RGD:1562784 NextBio:660409 Uniprot:D4ABT8
Length = 745
Score = 471 (170.9 bits), Expect = 2.9e-44, P = 2.9e-44
Identities = 132/394 (33%), Positives = 191/394 (48%)
Query: 28 PVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGING 87
P + A + V L+ DL F I + L E F WSGAR+ G+
Sbjct: 228 PPPEEEAKDEEEDQTLVNLDTYTSDLHFQISKDRYGGQPLFSEKFPTLWSGARSTYGVTK 287
Query: 88 GKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXX 147
GK CF K+ TQ + M++ + + RVG S D +LGE E S
Sbjct: 288 GKVCFEAKV--TQNLPMKEGCTEVS-LLRVGWSI-DFSCSQLGEDEFSYGFDGRGLKAEN 343
Query: 148 XXXLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVK 207
FG+ FG D I C + E+ + + F+KNG+ LG A F LG
Sbjct: 344 GQFEEFGQTFGENDVIGCFANFETGEVE-LSFSKNGEDLGVA--FRISKESLG------- 393
Query: 208 ERQCESAVFPHILLKNVVVVMQFSV-EQGLIPVEGYKSWVSAL---DDGNSVLGPTFCNM 263
+ A+ PH+L KN V+ + F E+ P ++ A+ + + + P +
Sbjct: 394 ----DRALLPHVLCKNCVIELNFGQKEEPFFPPPEEFVFIHAVPVEERVRTAVPPK--TI 447
Query: 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQ 323
++CEV++MVGLP SGKT WA K+ K++PEKRY +LG +L QM++ GL +
Sbjct: 448 EECEVILMVGLPGSGKTQWALKYAKENPEKRYNVLGAETVLTQMRMKGLEEPEMDPKSRD 507
Query: 324 CLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDL 383
L+ +A+ L+ ASR+ RNFI+DQ NV+ S ++RKL LF F + VVV P ED
Sbjct: 508 LLVQQASQCLSKLVQIASRSKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDW 567
Query: 384 KIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKD 417
K R R + G +VP + M AN+ LP D
Sbjct: 568 KKRLELRKEVEGDDVPESIMLEMKANFSLPEKCD 601
>UNIPROTKB|I3LUR1 [details] [associations]
symbol:HNRNPUL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR003034 InterPro:IPR003877
InterPro:IPR027026 Pfam:PF00622 Pfam:PF02037 PROSITE:PS50800
SMART:SM00513 GO:GO:0005634 GO:GO:0003676 InterPro:IPR008985
SUPFAM:SSF49899 Gene3D:1.10.720.30 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
GeneTree:ENSGT00390000020210 CTD:221092 OMA:DYEYNRY
PANTHER:PTHR12381:SF12 EMBL:FP312617 RefSeq:XP_003353867.1
Ensembl:ENSSSCT00000030161 GeneID:100620658 KEGG:ssc:100620658
Uniprot:I3LUR1
Length = 747
Score = 466 (169.1 bits), Expect = 1.1e-43, P = 1.1e-43
Identities = 131/394 (33%), Positives = 191/394 (48%)
Query: 28 PVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGING 87
P + A + V L+ DL F + + L E F WSGAR+ G+
Sbjct: 231 PPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSKDRYGGQPLFSEKFPTLWSGARSTYGVTK 290
Query: 88 GKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXX 147
GK CF K+ TQ + M++ + + RVG S D +LGE E S
Sbjct: 291 GKVCFEAKV--TQNLPMKEGCTEVS-LLRVGWSV-DFSHPQLGEDEFSYGFDGRGLKAEN 346
Query: 148 XXXLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVK 207
FG+ FG D I C + E++ + + F+KNG+ LG A + K
Sbjct: 347 GQFEEFGQTFGENDVIGCFANFEAEEVE-LSFSKNGEDLGVAFRIS-------------K 392
Query: 208 ERQCESAVFPHILLKNVVVVMQFSV-EQGLIPVEGYKSWVSAL---DDGNSVLGPTFCNM 263
E + A+ PH+L KN VV + F E+ P ++ A+ + + + P +
Sbjct: 393 ESLADRALLPHVLCKNCVVELNFGQKEEPFFPPPEEFVFIHAVPVEERVRTAVPPK--TI 450
Query: 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQ 323
++CEV++MVGLP SGKT WA K+ K++ EKRY +LG +L QM++ GL +
Sbjct: 451 EECEVILMVGLPGSGKTQWALKYAKENAEKRYNVLGAETVLNQMRMKGLEEPEMDPKSRD 510
Query: 324 CLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDL 383
L+ +A+ L+ ASRT RNFI+DQ NV+ S ++RKL LF F + VVV P ED
Sbjct: 511 LLVQQASQCLSKLVQIASRTKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDW 570
Query: 384 KIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKD 417
K R R + G +VP + M AN+ LP D
Sbjct: 571 KKRLELRKEVEGDDVPESIMLEMKANFSLPEKCD 604
>UNIPROTKB|H3BQZ7 [details] [associations]
symbol:hCG_2044799 "Uncharacterized protein" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003034
InterPro:IPR003877 InterPro:IPR027026 Pfam:PF00622 Pfam:PF02037
PROSITE:PS50800 SMART:SM00513 GO:GO:0005634 EMBL:AP001160
EMBL:CH471076 GO:GO:0003676 InterPro:IPR008985 SUPFAM:SSF49899
Gene3D:1.10.720.30 InterPro:IPR001870 InterPro:IPR018355
SMART:SM00449 PROSITE:PS50188 EMBL:AP001458 PANTHER:PTHR12381:SF12
SMR:H3BQZ7 Ensembl:ENST00000403734 Uniprot:H3BQZ7
Length = 746
Score = 465 (168.7 bits), Expect = 1.4e-43, P = 1.4e-43
Identities = 131/395 (33%), Positives = 193/395 (48%)
Query: 28 PVSDSSASGPRSQKQRVV-LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGIN 86
P+ + + Q +V L+ DL F + + L E F WSGAR+ G+
Sbjct: 229 PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSKDRYGGQPLFSEKFPTLWSGARSTYGVT 288
Query: 87 GGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXX 146
GK CF K+ TQ + M++ + + RVG S D +LGE E S
Sbjct: 289 KGKVCFEAKV--TQNLPMKEGCTEVS-LLRVGWSV-DFSRPQLGEDEFSYGFDGRGLKAE 344
Query: 147 XXXXLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAV 206
FG+ FG D I C + E++ + + F+KNG+ LG A
Sbjct: 345 NGQFEEFGQTFGENDVIGCFANFETEEVE-LSFSKNGEDLGVAFWIS------------- 390
Query: 207 KERQCESAVFPHILLKNVVVVMQFSV-EQGLIPVEGYKSWVSAL---DDGNSVLGPTFCN 262
K+ + A+ PH+L KN VV + F E+ P ++ A+ + + + P
Sbjct: 391 KDSLADRALLPHVLCKNCVVELNFGQKEEPFFPPPEEFVFIHAVPVEERVRTAVPPK--T 448
Query: 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERF 322
+++CEV++MVGLP SGKT WA K+ K++PEKRY +LG +L QM++ GL +
Sbjct: 449 IEECEVILMVGLPGSGKTQWALKYAKENPEKRYNVLGAETVLNQMRMKGLEEPEMDPKSR 508
Query: 323 QCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPED 382
L+ +A+ L+ ASRT RNFI+DQ NV+ S ++RKL LF F + VVV P ED
Sbjct: 509 DLLVQQASQCLSKLVQIASRTKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEED 568
Query: 383 LKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKD 417
K R R + G +VP + M AN+ LP D
Sbjct: 569 WKKRLELRKEVEGDDVPESIMLEMKANFSLPEKCD 603
>UNIPROTKB|Q1KMD3 [details] [associations]
symbol:HNRNPUL2 "Heterogeneous nuclear ribonucleoprotein
U-like protein 2" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003034
InterPro:IPR003877 InterPro:IPR027026 Pfam:PF00622 Pfam:PF02037
PROSITE:PS50800 SMART:SM00513 GO:GO:0005634 GO:GO:0003676
InterPro:IPR008985 SUPFAM:SSF49899 Gene3D:1.10.720.30
InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
eggNOG:NOG297571 HOVERGEN:HBG061101 HOGENOM:HOG000253920
EMBL:DQ470474 EMBL:AL834470 IPI:IPI00456887 RefSeq:NP_001073027.1
UniGene:Hs.657058 ProteinModelPortal:Q1KMD3 SMR:Q1KMD3
IntAct:Q1KMD3 STRING:Q1KMD3 PhosphoSite:Q1KMD3 DMDM:121940728
PaxDb:Q1KMD3 PeptideAtlas:Q1KMD3 PRIDE:Q1KMD3 DNASU:221092
Ensembl:ENST00000301785 GeneID:221092 KEGG:hsa:221092
UCSC:uc001nuw.3 CTD:221092 GeneCards:GC11M062482 HGNC:HGNC:25451
HPA:HPA041632 neXtProt:NX_Q1KMD3 PharmGKB:PA162391554
InParanoid:Q1KMD3 OMA:DYEYNRY OrthoDB:EOG4N30NM ChiTaRS:HNRNPUL2
GenomeRNAi:221092 NextBio:91196 PMAP-CutDB:Q1KMD3 Bgee:Q1KMD3
CleanEx:HS_HNRNPUL2 Genevestigator:Q1KMD3 PANTHER:PTHR12381:SF12
Uniprot:Q1KMD3
Length = 747
Score = 465 (168.7 bits), Expect = 1.4e-43, P = 1.4e-43
Identities = 131/395 (33%), Positives = 193/395 (48%)
Query: 28 PVSDSSASGPRSQKQRVV-LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGIN 86
P+ + + Q +V L+ DL F + + L E F WSGAR+ G+
Sbjct: 229 PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSKDRYGGQPLFSEKFPTLWSGARSTYGVT 288
Query: 87 GGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXX 146
GK CF K+ TQ + M++ + + RVG S D +LGE E S
Sbjct: 289 KGKVCFEAKV--TQNLPMKEGCTEVS-LLRVGWSV-DFSRPQLGEDEFSYGFDGRGLKAE 344
Query: 147 XXXXLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAV 206
FG+ FG D I C + E++ + + F+KNG+ LG A
Sbjct: 345 NGQFEEFGQTFGENDVIGCFANFETEEVE-LSFSKNGEDLGVAFWIS------------- 390
Query: 207 KERQCESAVFPHILLKNVVVVMQFSV-EQGLIPVEGYKSWVSAL---DDGNSVLGPTFCN 262
K+ + A+ PH+L KN VV + F E+ P ++ A+ + + + P
Sbjct: 391 KDSLADRALLPHVLCKNCVVELNFGQKEEPFFPPPEEFVFIHAVPVEERVRTAVPPK--T 448
Query: 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERF 322
+++CEV++MVGLP SGKT WA K+ K++PEKRY +LG +L QM++ GL +
Sbjct: 449 IEECEVILMVGLPGSGKTQWALKYAKENPEKRYNVLGAETVLNQMRMKGLEEPEMDPKSR 508
Query: 323 QCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPED 382
L+ +A+ L+ ASRT RNFI+DQ NV+ S ++RKL LF F + VVV P ED
Sbjct: 509 DLLVQQASQCLSKLVQIASRTKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEED 568
Query: 383 LKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKD 417
K R R + G +VP + M AN+ LP D
Sbjct: 569 WKKRLELRKEVEGDDVPESIMLEMKANFSLPEKCD 603
>ZFIN|ZDB-GENE-081107-3 [details] [associations]
symbol:si:ch211-107m4.1 "si:ch211-107m4.1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR003034 InterPro:IPR003877 InterPro:IPR027026
Pfam:PF00622 Pfam:PF02037 PROSITE:PS50800 SMART:SM00513
ZFIN:ZDB-GENE-081107-3 GO:GO:0005634 GO:GO:0003676
InterPro:IPR008985 SUPFAM:SSF49899 Gene3D:1.10.720.30
InterPro:IPR018355 SMART:SM00449 GeneTree:ENSGT00390000020210
PANTHER:PTHR12381:SF12 EMBL:CT573285 IPI:IPI00774386
ProteinModelPortal:E7F676 Ensembl:ENSDART00000079385
ArrayExpress:E7F676 Bgee:E7F676 Uniprot:E7F676
Length = 716
Score = 448 (162.8 bits), Expect = 8.0e-42, P = 8.0e-42
Identities = 130/403 (32%), Positives = 188/403 (46%)
Query: 15 KPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAY 74
K + + +AK +PV + + V L+ + DL F+++ NG L E F
Sbjct: 213 KEDILYNRAKTPEPVEELPEPVEEPEVDFVRLDSYNGDLHFEVDSNGSSGQPLFWEKFPL 272
Query: 75 CWSGARANVGINGGKYCFGCKIVS--TQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGET 132
WSG R G GK F K V + P + PD HV RVG S + +LGE
Sbjct: 273 LWSGCRMTHGYCQGKVGFEAKFVKRLSAPALNTNNAPDL-HVLRVGWSVDSSSL-QLGEV 330
Query: 133 EQSXXXXXXXXXXXXXXXLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQF 192
E S +FGE F GD I C ++ AT+ F KNG+ LG A F
Sbjct: 331 ELSYGFDGRGSIVTGGKEESFGEPFTEGDVIGCYAHIDETGEATLSFHKNGRSLGVA--F 388
Query: 193 DAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQGLIPVEGYKSWVSALDDG 252
S+ LG A++PH+L KN V + + P S +S L G
Sbjct: 389 HLNSSVLG-----------GQALYPHVLCKNCSVSVNLDPDAPWYPFPAGFSALSTLPPG 437
Query: 253 NSVLGPTFCNMK-DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPG 311
P K DCEV+MMVG+P SGKT WA+ + +P KRY LL TN IL M+ P
Sbjct: 438 QRTRAPLPAASKSDCEVLMMVGMPGSGKTHWAQAHILQNPSKRYDLLSTNSILNCMREP- 496
Query: 312 LLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRK 371
N+ E ++ +A L+ A+ RN+I+DQ N++ SA++ K+ F +++
Sbjct: 497 --TGANHRE---LMLQQATQCVSQLIKIAAAKKRNYILDQANIYPSAQRHKMLCFHGYQR 551
Query: 372 IAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPV 414
AVVVFP E + R V+R ++ G V ++ ++ +PV
Sbjct: 552 KAVVVFPPDEVWRSRLVQRQEQEGIAVQETSLLKAKVSFTVPV 594
>FB|FBgn0050122 [details] [associations]
symbol:CG30122 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] InterPro:IPR003034 InterPro:IPR003877
Pfam:PF00622 Pfam:PF02037 PROSITE:PS50800 SMART:SM00513
EMBL:AE013599 GO:GO:0003676 InterPro:IPR008985 SUPFAM:SSF49899
Gene3D:1.10.720.30 GO:GO:0071011 GO:GO:0000398 InterPro:IPR001870
PROSITE:PS50188 GeneTree:ENSGT00390000020210 UniGene:Dm.12100
GeneID:37146 KEGG:dme:Dmel_CG30122 FlyBase:FBgn0050122
GenomeRNAi:37146 NextBio:802174 RefSeq:NP_001163196.1
ProteinModelPortal:E1JGL8 SMR:E1JGL8 EnsemblMetazoa:FBtr0300923
OMA:YEICLNS PhylomeDB:E1JGL8 Bgee:E1JGL8 Uniprot:E1JGL8
Length = 1272
Score = 284 (105.0 bits), Expect = 5.9e-40, Sum P(2) = 5.9e-40
Identities = 69/183 (37%), Positives = 108/183 (59%)
Query: 239 VEGYKSWVSALDDGNSVLGPTFC-NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYIL 297
+EGY + + V GP + K+CEV+++VGLP +GKT WA K V ++ +KRY L
Sbjct: 680 LEGYVL-IGLVPVEKLVSGPQRVGSRKECEVILLVGLPGAGKTHWAHKHVAENADKRYEL 738
Query: 298 LGTNLILEQMKVPGLLRKHNYSERFQ-----CLMGRANAIFDVLLSRASRTPRNFIIDQT 352
+G + + +M + G RK + R+ CL A A+ D+ + R RNFI+DQT
Sbjct: 739 IGPDAFISKMTIDGASRKTVHKGRWDKVYEICLNSLA-ALEDIAMKRR----RNFILDQT 793
Query: 353 NVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKE--VPADAVNNMLANY 410
NV+ SA++RK++ F +F++IAVV P ++LK R ++ +E G V +NN+ AN+
Sbjct: 794 NVYASAQRRKMKGFNDFKRIAVVCIPSEDELKRRIAEK-EEKGNAFTVKESTINNLRANF 852
Query: 411 VLP 413
LP
Sbjct: 853 TLP 855
Score = 214 (80.4 bits), Expect = 5.9e-40, Sum P(2) = 5.9e-40
Identities = 74/232 (31%), Positives = 107/232 (46%)
Query: 13 GDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSG-LHQEG 71
GDK ES K A + V + P ++ +V L+ D DL I+ S+ L E
Sbjct: 274 GDKRES--KAAAEERTVPEDE---PTIEENKVGLSWLDSDLHLRIDPTTFASAKPLTSEI 328
Query: 72 FAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHV--CRVGTSRGDDPVGKL 129
++ WSGARAN G+ GK CF ++ + D+ HV RVG S + L
Sbjct: 329 YSLIWSGARANYGVREGKVCFEVRLSEESVPENSHYFRDEPHVRGFRVGFSMPKSSL-LL 387
Query: 130 GETEQSXXXXXXXXXXXXXXXLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
GE E S ++G+ + + D I C +DLES+P TI + NG+ LG A
Sbjct: 388 GEAEHSFGYCETGRKATQSEFTDYGKPYQLDDVIGCYLDLESEP-CTINYTLNGEDLGVA 446
Query: 190 KQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFS-VEQGLIPVE 240
+F+ S + E E A+FPHI+ K ++ FS EQ L+ E
Sbjct: 447 FEFEK---------SILGE---EGALFPHIVTKGYEYLVNFSDTEQLLVNAE 486
Score = 37 (18.1 bits), Expect = 6.1e-13, Sum P(2) = 6.1e-13
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 273 GLPASGKTTWAEKW 286
G P GK + + KW
Sbjct: 1130 GAPGGGKASLSGKW 1143
>UNIPROTKB|I3LU51 [details] [associations]
symbol:HNRNPUL1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019899 "enzyme binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0009615 "response to virus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR003034
InterPro:IPR003877 InterPro:IPR027025 Pfam:PF00622 Pfam:PF02037
PROSITE:PS50800 SMART:SM00513 GO:GO:0005634 GO:GO:0003676
GO:GO:0009615 GO:GO:0006396 InterPro:IPR008985 SUPFAM:SSF49899
Gene3D:1.10.720.30 InterPro:IPR001870 InterPro:IPR018355
SMART:SM00449 PROSITE:PS50188 OMA:SGPDGHY PANTHER:PTHR12381:SF10
GeneTree:ENSGT00390000020210 EMBL:FP700139
Ensembl:ENSSSCT00000025796 Uniprot:I3LU51
Length = 865
Score = 392 (143.0 bits), Expect = 2.1e-35, P = 2.1e-35
Identities = 123/383 (32%), Positives = 181/383 (47%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSG--LHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQP 101
V ++ +CDL F + + +SSG L EGFAY WSGARA+ G+ G+ CF KI
Sbjct: 215 VAIDTYNCDLHFKVARD--RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEIS 272
Query: 102 VD-MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVG 160
V + T PD HV R+G S D +LGE S N+G+KF
Sbjct: 273 VKHLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAEN 330
Query: 161 DTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHIL 220
D I C +D E + F KNGKW+G A F LG A++PH+L
Sbjct: 331 DVIGCFVDFECGNDVELSFTKNGKWMGIA--FRIQKEALG-----------GQALYPHVL 377
Query: 221 LKNVVVVMQFS--VEQGLIPVEGYKSWVSALDDGNSVLGPTFCNMK-DCEVMMMVG-LPA 276
+KN V F E + G+ +++ L + G K +CE+ +++ LP
Sbjct: 378 VKNCAVEFNFGQRAEPYCSVLPGF-TFIQHLPLSERIRGTVGPKSKAECEIFLLLSSLPH 436
Query: 277 SGKTTWAEKWVKDHPEKRYILLGTNLILEQMK--VPGLLRKHNYSERFQCLMGRANAIFD 334
+ + + N IL+Q + GL R+ ++ L+ A+
Sbjct: 437 GHQQVGVLPGCSVKLSLLHSIPXRNYILDQKSRILMGLPRQRLIFSEWKLLV--VTALRC 494
Query: 335 VLLSRASRTPR----NFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKR 390
VL R+ P N +++TNV+ SA++RK+R F F++ A+V+ P EDLK R++KR
Sbjct: 495 VLEHRSVPAPAQDAPNHHLEETNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKR 554
Query: 391 FKEMGKEVPADAVNNMLANYVLP 413
E GK+VP AV M AN+ LP
Sbjct: 555 TDEEGKDVPDHAVLEMKANFTLP 577
>WB|WBGene00012769 [details] [associations]
symbol:Y41E3.11 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0019915
"lipid storage" evidence=IMP] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR003034 InterPro:IPR003877 Pfam:PF00622 SMART:SM00513
GO:GO:0009792 GO:GO:0002009 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
InterPro:IPR008985 SUPFAM:SSF49899 GO:GO:0019915 GO:GO:0007281
GO:GO:0040020 InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449
PROSITE:PS50188 EMBL:Z95559 eggNOG:NOG297571
GeneTree:ENSGT00390000020210 RefSeq:NP_001255853.1
ProteinModelPortal:B9WRU1 SMR:B9WRU1 STRING:B9WRU1 PaxDb:B9WRU1
EnsemblMetazoa:Y41E3.11a GeneID:178421 KEGG:cel:CELE_Y41E3.11
CTD:178421 WormBase:Y41E3.11a HOGENOM:HOG000015819 OMA:NGVPRIR
ArrayExpress:B9WRU1 Uniprot:B9WRU1
Length = 1667
Score = 318 (117.0 bits), Expect = 6.0e-28, Sum P(2) = 6.0e-28
Identities = 118/440 (26%), Positives = 199/440 (45%)
Query: 5 KREL-ELPDGDKPESVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGL- 62
+ EL E+ G KP+ KKA V P + P + + + L+ + D+ + +
Sbjct: 908 ENELYEIAAGIKPKKKEKKALVQIPEEERV---P-ADSETIELDYYNADILVKSAEKDIW 963
Query: 63 KSSGLHQEGFAYCWSGARANVGIN-----GGK-----YCFGCKIVSTQPVDMEDTP--PD 110
+ +Q+G A W G R+N GI GK F +I S Q + T D
Sbjct: 964 QIEPFNQDGLALMWGGIRSNFGIKLPFKQTGKDASHRLAFQIQIDSYQSIQHLPTEFMAD 1023
Query: 111 QQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVGDTIICAIDLE 170
V R+G S LGE+ S +FG+ F +GD + C DL
Sbjct: 1024 GGDV-RIGFSLASTASLILGESPGSWCISASGKRAANNHFSDFGKLFDIGDVVTCIFDLS 1082
Query: 171 SKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN----VVV 226
+ TI + NG+ +G+ F++ ++ R+ + +FP I KN V +
Sbjct: 1083 ---VGTISYQINGENVGSP--FES-----------LQFREGD-VIFPTICTKNANINVNM 1125
Query: 227 VMQFSVEQGLIPVEGYKSWVSALDDGNSVLGPTF-CNMKDCEVMMMVGLPASGKTTWAEK 285
+ + E+ IP + +++ +D + V T KDC V+M VGLP GKTTW +
Sbjct: 1126 GQELTDEKWKIPEDRDWMFITEMDRAHLVRSHTAPAAKKDCTVLMTVGLPGVGKTTWVRR 1185
Query: 286 WVKDHPEKRYILLGTNLILEQMKVPGLLR-KHNYSERFQCLMGRANAIFDVLLSRASRTP 344
++ +HP + + L+ +++++ MKV G+ R + +R L G + L+ A R
Sbjct: 1186 YLAEHPHEHWTLISADVVMDAMKVNGVPRIRLPTLKRPDFLRGIIGKSMNRLILLAPRRR 1245
Query: 345 RNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVN 404
+N+I+D TN F RKRKL F F + ++ P + + R +K+ E +++ DA+
Sbjct: 1246 KNYILDMTNCFAEKRKRKLMAFEEFNRKCMLFVPDEDTHQKRLIKQEHEENEKLDTDAMM 1305
Query: 405 NMLANYVLPVNKDTPGSDEL 424
A LP+ + +EL
Sbjct: 1306 QHKAAMSLPIVAEGEPCEEL 1325
Score = 39 (18.8 bits), Expect = 6.0e-28, Sum P(2) = 6.0e-28
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 4 AKRELELPDGDKPESVV--KKAKVDDP 28
A ++++ D D+PE+ + K+ +P
Sbjct: 229 ASEQMDVEDEDEPEAAADPEPPKIQEP 255
>UNIPROTKB|Q5RI18 [details] [associations]
symbol:HNRNPU "Heterogeneous nuclear ribonucleoprotein U"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR003877 InterPro:IPR026745 Pfam:PF00622 GO:GO:0005634
GO:GO:0003676 InterPro:IPR008985 SUPFAM:SSF49899 GO:GO:0030529
InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
EMBL:BX323046 UniGene:Hs.106212 HGNC:HGNC:5048 ChiTaRS:HNRNPU
PANTHER:PTHR12381:SF11 IPI:IPI00644079 IntAct:Q5RI18 STRING:Q5RI18
Ensembl:ENST00000440865 HOGENOM:HOG000213843 Uniprot:Q5RI18
Length = 242
Score = 205 (77.2 bits), Expect = 5.9e-16, P = 5.9e-16
Identities = 60/191 (31%), Positives = 84/191 (43%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
V L+ +CDL F I + L +S L E FA+ W+G RA+ G++ GK CF K+ PV
Sbjct: 65 VCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVR 124
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSXXXXXXXXXXXXXXXLNFGEKFGVGDTI 163
T H R+G S + LGE E S ++GEKF D I
Sbjct: 125 HLYTKDIDIHEVRIGWSLTTSGM-LLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVI 183
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C + ES + + +AKNG+ LG A + KE +FPH+L N
Sbjct: 184 TCFANFESDEVE-LSYAKNGQDLGVAFKIS-------------KEVLAGRPLFPHVLCHN 229
Query: 224 VVVVMQFSVEQ 234
V F ++
Sbjct: 230 CAVEFNFGQKE 240
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 435 420 0.00083 118 3 11 22 0.41 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 32
No. of states in DFA: 617 (66 KB)
Total size of DFA: 265 KB (2140 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 32.25u 0.11s 32.36t Elapsed: 00:00:02
Total cpu time: 32.26u 0.11s 32.37t Elapsed: 00:00:02
Start: Mon May 20 16:27:00 2013 End: Mon May 20 16:27:02 2013