BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013831
(435 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VDM6|HNRL1_MOUSE Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Mus
musculus GN=Hnrnpul1 PE=1 SV=1
Length = 859
Score = 260 bits (664), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 151/375 (40%), Positives = 211/375 (56%), Gaps = 22/375 (5%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPV- 102
V ++ +CDL F + + L EGFAY WSGARA+ G+ G+ CF KI V
Sbjct: 212 VAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVK 271
Query: 103 DMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDT 162
+ T PD HV R+G S D +LGE S+G+GGTGK S F N+G+KF D
Sbjct: 272 HLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDV 329
Query: 163 IICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK 222
I C D E + F KNGKW+G A F LG A++PH+L+K
Sbjct: 330 IGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALGG-----------QALYPHVLVK 376
Query: 223 NVVVVMQFSVEQ----GLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASG 278
N V F ++P + + + +GP + +CE++MMVGLPA+G
Sbjct: 377 NCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTIGPK--SKAECEILMMVGLPAAG 434
Query: 279 KTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLS 338
KTTWA K +P K+Y +LGTN I+++M+V GL R+ NY+ R+ L+ +A + L+
Sbjct: 435 KTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQ 494
Query: 339 RASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEV 398
A+R RN+I+DQTNV+ SA++RK+R F F++ A+V+ P EDLK R+VKR E GK+V
Sbjct: 495 IAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTVKRTDEEGKDV 554
Query: 399 PADAVNNMLANYVLP 413
P AV M AN+ LP
Sbjct: 555 PDHAVLEMKANFTLP 569
>sp|Q9BUJ2|HNRL1_HUMAN Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Homo
sapiens GN=HNRNPUL1 PE=1 SV=2
Length = 856
Score = 259 bits (662), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 150/375 (40%), Positives = 211/375 (56%), Gaps = 22/375 (5%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPV- 102
V ++ +CDL F + + L EGFAY WSGARA+ G+ G+ CF KI V
Sbjct: 211 VAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVK 270
Query: 103 DMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDT 162
+ T PD HV R+G S D +LGE S+G+GGTGK S F N+G+KF D
Sbjct: 271 HLPSTEPDP-HVVRIGWSL-DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDV 328
Query: 163 IICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK 222
I C D E + F KNGKW+G A F LG A++PH+L+K
Sbjct: 329 IGCFADFECGNDVELSFTKNGKWMGIA--FRIQKEALGG-----------QALYPHVLVK 375
Query: 223 NVVVVMQFSVEQ----GLIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMMMVGLPASG 278
N V F ++P + + + +GP + +CE++MMVGLPA+G
Sbjct: 376 NCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPK--SKAECEILMMVGLPAAG 433
Query: 279 KTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLS 338
KTTWA K +P K+Y +LGTN I+++M+V GL R+ NY+ R+ L+ +A + L+
Sbjct: 434 KTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQ 493
Query: 339 RASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEV 398
A+R RN+I+DQTNV+ SA++RK+R F F++ A+V+ P EDLK R++KR E GK+V
Sbjct: 494 IAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDV 553
Query: 399 PADAVNNMLANYVLP 413
P AV M AN+ LP
Sbjct: 554 PDHAVLEMKANFTLP 568
>sp|Q00839|HNRPU_HUMAN Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU
PE=1 SV=6
Length = 825
Score = 211 bits (536), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 134/372 (36%), Positives = 195/372 (52%), Gaps = 18/372 (4%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
V L+ +CDL F I + L +S L E FA+ W+G RA+ G++ GK CF K+ PV
Sbjct: 288 VCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVR 347
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
T H R+G S + LGE E S+G+ G + ++GEKF D I
Sbjct: 348 HLYTKDIDIHEVRIGWSLTTSGM-LLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVI 406
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C + ES + + +AKNG+ LG A + KE +FPH+L N
Sbjct: 407 TCFANFESDEV-ELSYAKNGQDLGVAFKIS-------------KEVLAGRPLFPHVLCHN 452
Query: 224 VVVVMQF-SVEQGLIPVEGYKSWVSALDDGNSVLGPTFCN-MKDCEVMMMVGLPASGKTT 281
V F E+ P+ +++ + + V GP KDCEV+MM+GLP +GKTT
Sbjct: 453 CAVEFNFGQKEKPYFPIPEEYTFIQNVPLEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTT 512
Query: 282 WAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341
W K ++P K Y +LGTN I+++M V G ++ + + L+ RA + A+
Sbjct: 513 WVTKHAAENPGK-YNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQRAPQCLGKFIEIAA 571
Query: 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPAD 401
R RNFI+DQTNV +A++RK+ LF F++ AVVV PK ED K R+ K+ + GK++P
Sbjct: 572 RKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQKKAEVEGKDLPEH 631
Query: 402 AVNNMLANYVLP 413
AV M N+ LP
Sbjct: 632 AVLKMKGNFTLP 643
>sp|Q8VEK3|HNRPU_MOUSE Heterogeneous nuclear ribonucleoprotein U OS=Mus musculus GN=Hnrnpu
PE=1 SV=1
Length = 800
Score = 209 bits (533), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 133/372 (35%), Positives = 196/372 (52%), Gaps = 18/372 (4%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
V L+ +CDL F I + L +S L E FA+ W+G RA+ G++ GK CF K+ PV
Sbjct: 264 VCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVR 323
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
T H R+G S + LGE E S+G+ G + ++GEKF D I
Sbjct: 324 HLYTKDIDIHEVRIGWSLTTSGM-LLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVI 382
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C + E+ + + +AKNG+ LG A + KE + +FPH+L N
Sbjct: 383 TCFANFETDEV-ELSYAKNGQDLGVAFKIS-------------KEVLADRPLFPHVLCHN 428
Query: 224 VVVVMQF-SVEQGLIPVEGYKSWVSALDDGNSVLGPTFCN-MKDCEVMMMVGLPASGKTT 281
V F E+ P+ +++ + + V GP KDCEV+MM+GLP +GKTT
Sbjct: 429 CAVEFNFGQKEKPYFPIPEDCTFIQNVPLEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTT 488
Query: 282 WAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341
W K ++P K Y +LGTN I+++M V G ++ + + L+ RA + A+
Sbjct: 489 WVTKHAAENPGK-YNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQRAPQCLGKFIEIAA 547
Query: 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPAD 401
R RNFI+DQTNV +A++RK+ LF F++ AVVV PK ED K R+ K+ + GK++P
Sbjct: 548 RKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQKKAEVEGKDLPEH 607
Query: 402 AVNNMLANYVLP 413
AV M N+ LP
Sbjct: 608 AVLKMKGNFTLP 619
>sp|Q00PI9|HNRL2_MOUSE Heterogeneous nuclear ribonucleoprotein U-like protein 2 OS=Mus
musculus GN=Hnrnpul2 PE=1 SV=2
Length = 745
Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 134/383 (34%), Positives = 191/383 (49%), Gaps = 42/383 (10%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
V L+ DL F I + L E F WSGAR+ G+ GK CF K+ P+
Sbjct: 244 VNLDTYTSDLHFQISKDRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCFEAKVTQNLPMK 303
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
T + + RVG S D +LGE E S+GF G G + G F FG+ FG D I
Sbjct: 304 EGCT---EVSLLRVGWSV-DFSCSQLGEDEFSYGFDGRGLKAENGQFEEFGQTFGENDVI 359
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C + E++ + + F+KNG+ LG A + KE + A+ PH+L KN
Sbjct: 360 GCFANFETEEV-ELSFSKNGEDLGVAFRIS-------------KESLADRALLPHVLCKN 405
Query: 224 VVVVMQFSVEQG-------------LIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMM 270
VV + F ++ +PVE + + + P +++CEV++
Sbjct: 406 CVVELNFGQKEEPFFPPPEEFVFIHAVPVE---------ERVRTAVPPK--TIEECEVIL 454
Query: 271 MVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRAN 330
MVGLP SGKT WA K+ KD+PE+RY +LG +L QM++ GL + L+ +A+
Sbjct: 455 MVGLPGSGKTQWALKYAKDNPERRYNVLGAETVLTQMRMKGLEEPEMDPKSRDLLVQQAS 514
Query: 331 AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKR 390
L+ ASR+ RNFI+DQ NV+ S ++RKL LF F + VVV P ED K R R
Sbjct: 515 QCLSKLVQIASRSKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDWKRRLELR 574
Query: 391 FKEMGKEVPADAVNNMLANYVLP 413
+ G +VP + M AN+ LP
Sbjct: 575 KEVEGDDVPESIMLEMKANFSLP 597
>sp|Q1KMD3|HNRL2_HUMAN Heterogeneous nuclear ribonucleoprotein U-like protein 2 OS=Homo
sapiens GN=HNRNPUL2 PE=1 SV=1
Length = 747
Score = 197 bits (500), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 133/383 (34%), Positives = 192/383 (50%), Gaps = 42/383 (10%)
Query: 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
V L+ DL F + + L E F WSGAR+ G+ GK CF K+ P+
Sbjct: 246 VNLDTYTSDLHFQVSKDRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCFEAKVTQNLPMK 305
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
T + + RVG S D +LGE E S+GF G G + G F FG+ FG D I
Sbjct: 306 EGCT---EVSLLRVGWSV-DFSRPQLGEDEFSYGFDGRGLKAENGQFEEFGQTFGENDVI 361
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C + E++ + + F+KNG+ LG A + ++ +R A+ PH+L KN
Sbjct: 362 GCFANFETEEV-ELSFSKNGEDLGVA---------FWISKDSLADR----ALLPHVLCKN 407
Query: 224 VVVVMQFSVEQG-------------LIPVEGYKSWVSALDDGNSVLGPTFCNMKDCEVMM 270
VV + F ++ +PVE + + + P +++CEV++
Sbjct: 408 CVVELNFGQKEEPFFPPPEEFVFIHAVPVE---------ERVRTAVPPK--TIEECEVIL 456
Query: 271 MVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRAN 330
MVGLP SGKT WA K+ K++PEKRY +LG +L QM++ GL + L+ +A+
Sbjct: 457 MVGLPGSGKTQWALKYAKENPEKRYNVLGAETVLNQMRMKGLEEPEMDPKSRDLLVQQAS 516
Query: 331 AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKR 390
L+ ASRT RNFI+DQ NV+ S ++RKL LF F + VVV P ED K R R
Sbjct: 517 QCLSKLVQIASRTKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDWKKRLELR 576
Query: 391 FKEMGKEVPADAVNNMLANYVLP 413
+ G +VP + M AN+ LP
Sbjct: 577 KEVEGDDVPESIMLEMKANFSLP 599
>sp|Q55CP6|DDX1_DICDI Probable ATP-dependent RNA helicase ddx1 OS=Dictyostelium
discoideum GN=ddx1 PE=3 SV=1
Length = 765
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 33/192 (17%)
Query: 52 DLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQ 111
+LD D + GL + + W G +A GI+ GK+ + ++
Sbjct: 102 ELDQIDRDKNMAVDGLICQSRSSDWCGIKATKGISSGKFYY-------------ESIVRD 148
Query: 112 QHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLES 171
+ +CR+G + +G + S+G+GGTGK SH F+++G+ FG D I C I+ +
Sbjct: 149 EGLCRIGFALKKSS-RNIGTDKFSWGYGGTGKKSHESKFIDYGKPFGNNDVIGCYINFDE 207
Query: 172 KPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFS 231
+ IGF KNG+ G A F++ + +P ++LKN + F
Sbjct: 208 E---IIGFTKNGQDFGEAFTFNSKA----------------GIFYPALVLKNAEMEFNFG 248
Query: 232 VEQGLIPVEGYK 243
+ ++GYK
Sbjct: 249 SKPMKHDLKGYK 260
>sp|Q5XH91|DDX1_XENTR ATP-dependent RNA helicase DDX1 OS=Xenopus tropicalis GN=ddx1 PE=2
SV=1
Length = 740
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 94/212 (44%), Gaps = 39/212 (18%)
Query: 46 LNPADCDLDFDIEDNGL--KSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
+NP D F I +GL +S + + W G R+ G+N GKY +
Sbjct: 93 MNPYDRGSSFAIGSDGLCCQSREIKE------WHGCRSTRGVNKGKYYY----------- 135
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
+ Q +CRVG S + LG + FGFGGTGK SH F N+GE+F + DTI
Sbjct: 136 --EVSCHDQGLCRVGWSTLQASL-DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTI 192
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C ID+++ T+ ++KNGK LG A Q A AVF +LKN
Sbjct: 193 GCYIDIDN---GTVKYSKNGKDLGLAFQIPAHLKN--------------QAVFASCVLKN 235
Query: 224 VVVVMQFSVEQGLIPVEGYKSWVSALDDGNSV 255
+ F E P + +S DG+ V
Sbjct: 236 AELKFNFGEEDFKFPPKDGFVALSKAPDGHVV 267
>sp|A2VD92|DDX1_XENLA ATP-dependent RNA helicase DDX1 OS=Xenopus laevis GN=ddx1 PE=2 SV=1
Length = 740
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 97/212 (45%), Gaps = 39/212 (18%)
Query: 46 LNPADCDLDFDIEDNGL--KSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVD 103
+NP D F I +GL +S + + W G R+ G+N GKY +
Sbjct: 93 MNPYDRGSAFAIGSDGLCCQSREIKE------WHGCRSTRGVNKGKYYY----------- 135
Query: 104 MEDTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTI 163
+ Q +CRVG S + LG + FGFGGTGK SH F N+GE+F + DTI
Sbjct: 136 --EVSCHDQGLCRVGWSTLSASL-DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTI 192
Query: 164 ICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKN 223
C +D+++ + + F+KNGK LG A Q + S +K + A F +LKN
Sbjct: 193 GCYLDIDN---SIVKFSKNGKDLGLAFQ----------IPSHMKNQ----AFFTSCVLKN 235
Query: 224 VVVVMQFSVEQGLIPVEGYKSWVSALDDGNSV 255
+ F E P + +S DG+ V
Sbjct: 236 AELKFNFGEEDFKFPPKDGFVALSKAPDGHVV 267
>sp|Q0IIK5|DDX1_BOVIN ATP-dependent RNA helicase DDX1 OS=Bos taurus GN=DDX1 PE=2 SV=1
Length = 740
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 83/193 (43%), Gaps = 35/193 (18%)
Query: 46 LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDME 105
+NP D F I +GL Q W G RA G+ GK+ +
Sbjct: 93 MNPYDRGSAFAIGSDGLCC----QSREVKEWHGCRATKGLTKGKHYY------------- 135
Query: 106 DTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIIC 165
+ Q +CRVG S + LG + FGFGGTGK SH F N+GE+F + DTI C
Sbjct: 136 EVSCHDQGLCRVGWSSMQASL-DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGC 194
Query: 166 AIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVV 225
+D++ + F+KNGK LG A + + A+FP +LKN
Sbjct: 195 YLDIDK---GHVKFSKNGKDLGLAFE--------------IPPHMKNQALFPACVLKNAE 237
Query: 226 VVMQFSVEQGLIP 238
+ F E+ P
Sbjct: 238 LKFNFGEEEFKFP 250
>sp|Q90WU3|DDX1_CHICK ATP-dependent RNA helicase DDX1 OS=Gallus gallus GN=DDX1 PE=1 SV=1
Length = 740
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 89/211 (42%), Gaps = 37/211 (17%)
Query: 46 LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDME 105
+NP D F I +GL Q W G RA G+ GKY +
Sbjct: 93 MNPYDRGSAFAIGSDGLCC----QSREVKEWHGCRATRGVTKGKYYY------------- 135
Query: 106 DTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIIC 165
+ Q +CRVG S + LG + FGFGGTGK SH F ++GE+F + DTI C
Sbjct: 136 EVSCHDQGLCRVGWSTMQASL-DLGTDKFGFGFGGTGKKSHNKQFDSYGEEFTMHDTIGC 194
Query: 166 AIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVV 225
+D++ I F+KNGK LG A +F A+F +LKN
Sbjct: 195 YLDIDK---GQIKFSKNGKDLGLAFEFPPHIRN--------------QALFAACVLKNAE 237
Query: 226 VVMQFSVEQ-GLIPVEGYKSWVSALDDGNSV 255
+ F E P +GY A DGN V
Sbjct: 238 LKFNFGEEDFKFPPKDGYIGLCKA-PDGNVV 267
>sp|Q6LX62|PSTK_METMP L-seryl-tRNA(Sec) kinase OS=Methanococcus maripaludis (strain S2 /
LL) GN=pstK PE=3 SV=1
Length = 255
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 23/162 (14%)
Query: 268 VMMMVGLPASGKTTWAEKWVKDHPEKRY--ILLGTNLILEQMKVPGLLRKHNYSERFQCL 325
++++ GLP+ GK+T+++ + K EK I+LGT+LI E V + E ++
Sbjct: 2 LIILTGLPSVGKSTFSKAFSKKMAEKNIDNIILGTDLIRESFPV--------WKESYEEF 53
Query: 326 MGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK-PEDLK 384
+ +N + L+ A + I+D TN + S R+ + + V ++ K P +L
Sbjct: 54 IRDSN---NYLIKEALENKFSVIVDDTNYYNSKRRDLMNIAKECDTNYVTIYLKAPLNL- 109
Query: 385 IRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPGSDELFD 426
+KR E G+++P + + NM + DTPG+ +D
Sbjct: 110 --LLKRNIERGQKIPNEVIKNMYEKF------DTPGTKYAWD 143
>sp|Q641Y8|DDX1_RAT ATP-dependent RNA helicase DDX1 OS=Rattus norvegicus GN=Ddx1 PE=2
SV=1
Length = 740
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 86/193 (44%), Gaps = 35/193 (18%)
Query: 46 LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDME 105
+NP D F I +GL Q W G RA G+ GK+ +
Sbjct: 93 MNPYDRGSAFAIGSDGLCC----QSREVKEWHGCRATRGLLRGKHYY------------- 135
Query: 106 DTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIIC 165
+ Q +CRVG S + LG + FGFGGTGK SH F N+GE+F + DTI C
Sbjct: 136 EVSCHDQGLCRVGWSTMQASL-DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGC 194
Query: 166 AIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVV 225
+D++ + F+KNGK LG A + A +K + A+FP +LKN
Sbjct: 195 YLDIDK---GHVKFSKNGKDLGLAFEIPA----------HIKNQ----ALFPACVLKNAE 237
Query: 226 VVMQFSVEQGLIP 238
+ F E+ P
Sbjct: 238 LKFNFGEEEFKFP 250
>sp|Q4R7L5|DDX1_MACFA ATP-dependent RNA helicase DDX1 OS=Macaca fascicularis GN=DDX1 PE=2
SV=1
Length = 740
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 83/193 (43%), Gaps = 35/193 (18%)
Query: 46 LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDME 105
+NP D F I +GL Q W G RA G+ GK+ +
Sbjct: 93 MNPYDRGSAFAIGSDGLCC----QSREVKEWHGCRATKGLMKGKHYY------------- 135
Query: 106 DTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIIC 165
+ Q +CRVG S + LG + FGFGGTGK SH F N+GE+F + DTI C
Sbjct: 136 EVSCHDQGLCRVGWSTMQASL-DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGC 194
Query: 166 AIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVV 225
+D++ + F+KNGK LG A + + A+FP +LKN
Sbjct: 195 YLDIDK---GHVKFSKNGKDLGLAFE--------------IPPHMKNQALFPACVLKNAE 237
Query: 226 VVMQFSVEQGLIP 238
+ F E+ P
Sbjct: 238 LKFNFGEEEFKFP 250
>sp|Q5NVJ8|DDX1_PONAB ATP-dependent RNA helicase DDX1 OS=Pongo abelii GN=DDX1 PE=2 SV=1
Length = 740
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 83/193 (43%), Gaps = 35/193 (18%)
Query: 46 LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDME 105
+NP D F I +GL Q W G RA G+ GK+ +
Sbjct: 93 MNPYDRGSAFAIGSDGLCC----QSREVKEWHGCRATKGLMKGKHYY------------- 135
Query: 106 DTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIIC 165
+ Q +CRVG S + LG + FGFGGTGK SH F N+GE+F + DTI C
Sbjct: 136 EVSCHDQGLCRVGWSTMQASL-DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGC 194
Query: 166 AIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVV 225
+D++ + F+KNGK LG A + + A+FP +LKN
Sbjct: 195 YLDIDK---GHVKFSKNGKDLGLAFE--------------IPPHMKNQALFPACVLKNAE 237
Query: 226 VVMQFSVEQGLIP 238
+ F E+ P
Sbjct: 238 LKFNFGEEEFKFP 250
>sp|Q92499|DDX1_HUMAN ATP-dependent RNA helicase DDX1 OS=Homo sapiens GN=DDX1 PE=1 SV=2
Length = 740
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 83/193 (43%), Gaps = 35/193 (18%)
Query: 46 LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDME 105
+NP D F I +GL Q W G RA G+ GK+ +
Sbjct: 93 MNPYDRGSAFAIGSDGLCC----QSREVKEWHGCRATKGLMKGKHYY------------- 135
Query: 106 DTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIIC 165
+ Q +CRVG S + LG + FGFGGTGK SH F N+GE+F + DTI C
Sbjct: 136 EVSCHDQGLCRVGWSTMQASL-DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGC 194
Query: 166 AIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVV 225
+D++ + F+KNGK LG A + + A+FP +LKN
Sbjct: 195 YLDIDK---GHVKFSKNGKDLGLAFE--------------IPPHMKNQALFPACVLKNAE 237
Query: 226 VVMQFSVEQGLIP 238
+ F E+ P
Sbjct: 238 LKFNFGEEEFKFP 250
>sp|Q24498|RY44_DROME Ryanodine receptor 44F OS=Drosophila melanogaster GN=Rya-r44F PE=1
SV=3
Length = 5127
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 23/128 (17%)
Query: 82 NVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGD-DPVGKLGETEQSFGFGG 140
N + GK+ F +++++ P+ RVG +R D P LG + S+ F G
Sbjct: 1086 NYAVTSGKWYFEFEVLTSGPM-------------RVGWARADCYPGAMLGSEDTSWAFDG 1132
Query: 141 TGKFS-HGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWL-----GTAKQFDA 194
H G+ +FG ++ GD I C ID++ + TI F+ NG+ L G D
Sbjct: 1133 HNVTKMHAGSIEHFGVRYEAGDVIGCFIDVKEQ---TISFSLNGELLMDALGGETTFADV 1189
Query: 195 GSNGLGVV 202
+ G+G V
Sbjct: 1190 TAEGVGFV 1197
>sp|Q91VR5|DDX1_MOUSE ATP-dependent RNA helicase DDX1 OS=Mus musculus GN=Ddx1 PE=1 SV=1
Length = 740
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 92/207 (44%), Gaps = 36/207 (17%)
Query: 46 LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDME 105
+NP D F I +GL Q W G R G+ GK+ +
Sbjct: 93 MNPYDRGSAFAIGSDGLCC----QSREVKEWHGCRGTRGLLKGKHYY------------- 135
Query: 106 DTPPDQQHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIIC 165
+ Q +CRVG S + LG + FGFGGTGK SH F N+GE+F + DTI C
Sbjct: 136 EVSCHDQGLCRVGWSTMQASL-DLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGC 194
Query: 166 AIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLKNVV 225
+D++ + F+KNGK LG A + A +K + A+FP +LKN
Sbjct: 195 YLDIDK---GHVKFSKNGKDLGLAFEIPA----------HIKNQ----ALFPACVLKNAE 237
Query: 226 VVMQFSVEQ-GLIPVEGYKSWVSALDD 251
+ F E+ P +G+ + A D+
Sbjct: 238 LKFNFGEEEFKFPPKDGFVALSKAPDN 264
>sp|Q9VNV3|DDX1_DROME ATP-dependent RNA helicase Ddx1 OS=Drosophila melanogaster GN=Ddx1
PE=2 SV=1
Length = 727
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 75/157 (47%), Gaps = 34/157 (21%)
Query: 76 WSGARANVGING-GKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKLGETEQ 134
W G RA G+ G GK+ F E T D+ +CRVG S + LG
Sbjct: 117 WHGCRATTGVRGKGKFYF------------EATVTDEG-LCRVGWSTQQANL-DLGTCRM 162
Query: 135 SFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDA 194
FGFGGTGK S+ F ++GE FG D I C +DL+++ + F KNG+ LG A
Sbjct: 163 GFGFGGTGKKSNNRQFDDYGEAFGKADVIGCLLDLKNQ---EVSFTKNGQNLGVA----- 214
Query: 195 GSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFS 231
+ D+ KE +P ++LKN MQF+
Sbjct: 215 ----FRLPDNLAKE-----TFYPAVVLKN--AEMQFN 240
>sp|Q5XPI4|RN123_HUMAN E3 ubiquitin-protein ligase RNF123 OS=Homo sapiens GN=RNF123 PE=1
SV=1
Length = 1314
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 52/130 (40%), Gaps = 24/130 (18%)
Query: 115 CRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPL 174
CR G +G+T S+ + G N+G+ + GD + C IDL+
Sbjct: 156 CRFNQEEG------VGDTHNSYAYDGNRVRKWNVTTTNYGKAWAAGDIVSCLIDLDD--- 206
Query: 175 ATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVE 233
T+ F NG LGTA F+ S GLG+ A FP I L V F
Sbjct: 207 GTLSFCLNGVSLGTA--FENLSRGLGM------------AYFPAISLSFKESVAFNFGSR 252
Query: 234 QGLIPVEGYK 243
PV GY+
Sbjct: 253 PLRYPVAGYR 262
>sp|D3ZXK7|RN123_RAT E3 ubiquitin-protein ligase RNF123 OS=Rattus norvegicus GN=Rnf123
PE=1 SV=1
Length = 1318
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 52/130 (40%), Gaps = 24/130 (18%)
Query: 115 CRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPL 174
CR G +G+T S+ + G N+G+ + GD + C IDL+
Sbjct: 154 CRFNQEEG------VGDTHNSYAYDGNRVRKWNVTTTNYGKAWAAGDIVSCLIDLDD--- 204
Query: 175 ATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVE 233
T+ F NG LGTA F+ S GLG+ A FP I L V F
Sbjct: 205 GTLSFCLNGVSLGTA--FENLSRGLGM------------AYFPAISLSFKESVAFNFGSR 250
Query: 234 QGLIPVEGYK 243
PV G++
Sbjct: 251 PLRYPVAGFR 260
>sp|Q5XPI3|RN123_MOUSE E3 ubiquitin-protein ligase RNF123 OS=Mus musculus GN=Rnf123 PE=2
SV=1
Length = 1314
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 52/130 (40%), Gaps = 24/130 (18%)
Query: 115 CRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPL 174
CR G +G+T S+ + G N+G+ + GD + C IDL+
Sbjct: 156 CRFNQEEG------VGDTHNSYAYDGNRVRKWNVTTTNYGKAWAAGDIVSCLIDLDD--- 206
Query: 175 ATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVE 233
T+ F NG LGTA F+ S GLG+ A FP I L V F
Sbjct: 207 GTLSFCLNGVSLGTA--FENLSRGLGM------------AYFPAISLSFKESVAFNFGSR 252
Query: 234 QGLIPVEGYK 243
PV G++
Sbjct: 253 PLRYPVAGFR 262
>sp|P18160|SPLA_DICDI Dual specificity protein kinase splA OS=Dictyostelium discoideum
GN=splA PE=1 SV=3
Length = 2410
Score = 41.6 bits (96), Expect = 0.011, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 118 GTSRGDDPVGKL-GETEQSFGFGGTGKFSHGGNFLN-FGEKFGVGDTIICAIDLESKPLA 175
G + D P+ G + S+G+ G GK G N +G F GD + C D SK
Sbjct: 903 GLTTNDHPIEVYPGNYQGSYGYSGDGKCYFGTNEGRVYGPSFSSGDVVGCGYDSSSK--- 959
Query: 176 TIGFAKNGKWLGTAKQ 191
T+ F KNG +LG A Q
Sbjct: 960 TLYFTKNGVYLGVAAQ 975
>sp|Q290L5|FBSP1_DROPS F-box/SPRY domain-containing protein 1 OS=Drosophila pseudoobscura
pseudoobscura GN=Fsn PE=3 SV=1
Length = 255
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 30/156 (19%)
Query: 47 NPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMED 106
NP+DC + I+ NG LH+ A ARA +G G++ + +++ P+
Sbjct: 84 NPSDCSRNVYIKPNGFT---LHRNPVAQSTDAARAKIGFRHGRHAW--EVIWEGPLGT-- 136
Query: 107 TPPDQQHVCRVGTSRGDDP------VGKLGETEQSFGFG-------GTGKFSHGGNFLNF 153
V +G S + V LG +QS+G+ G G LN
Sbjct: 137 -------VAVIGISTKEAALQCHGYVALLGSDDQSWGWNLVENHLLHNGDMQGGYPLLNN 189
Query: 154 GEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
K+ VG+ I +D + T+ F KN ++LG A
Sbjct: 190 APKYQVGERIRVILDCDDN---TLSFEKNYEFLGVA 222
>sp|B4GBN7|FBSP1_DROPE F-box/SPRY domain-containing protein 1 OS=Drosophila persimilis
GN=Fsn PE=3 SV=1
Length = 255
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 30/156 (19%)
Query: 47 NPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMED 106
NP+DC + I+ NG LH+ A ARA +G G++ + +++ P+
Sbjct: 84 NPSDCSRNVYIKPNGFT---LHRNPVAQSTDAARAKIGFRHGRHAW--EVIWEGPLGT-- 136
Query: 107 TPPDQQHVCRVGTSRGDDP------VGKLGETEQSFGFG-------GTGKFSHGGNFLNF 153
V +G S + V LG +QS+G+ G G LN
Sbjct: 137 -------VAVIGISTKEAALQCHGYVALLGSDDQSWGWNLVENHLLHNGDMQGGYPLLNN 189
Query: 154 GEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
K+ VG+ I +D + T+ F KN ++LG A
Sbjct: 190 APKYQVGERIRVILDCDDN---TLSFEKNYEFLGVA 222
>sp|B4KNC5|FBSP1_DROMO F-box/SPRY domain-containing protein 1 OS=Drosophila mojavensis
GN=Fsn PE=3 SV=1
Length = 252
Score = 40.0 bits (92), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 30/156 (19%)
Query: 47 NPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMED 106
NP DC + I+ NG LH+ A ARA +G G++ + +++ P+
Sbjct: 81 NPNDCSRNVYIKPNGFT---LHRNPVAQSTDAARAKIGFRQGRHAW--EVIWEGPLGT-- 133
Query: 107 TPPDQQHVCRVGTSRGDDP------VGKLGETEQSFGFGGT-GKFSHGGN------FLNF 153
V +G S + V LG +QS+G+ H G+ LN
Sbjct: 134 -------VAVIGISTKEAALQCHGYVALLGSDDQSWGWNLVENHLLHNGDMQGNYPLLNN 186
Query: 154 GEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
K+ VG+ I +D + T+ F KN ++LG A
Sbjct: 187 APKYQVGERIRVILDCDDN---TLSFEKNYEFLGVA 219
>sp|B4MR59|FBSP1_DROWI F-box/SPRY domain-containing protein 1 OS=Drosophila willistoni
GN=Fsn PE=3 SV=1
Length = 255
Score = 38.9 bits (89), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 30/182 (16%)
Query: 21 KKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGAR 80
K+A D ++ S + + +P DC + I+ NG LH+ A AR
Sbjct: 58 KEAMKSDLLTSVSTYKTKLRAYFHAWSPNDCSRNVYIKPNGFT---LHRNPVAQSTDAAR 114
Query: 81 ANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDP------VGKLGETEQ 134
A +G G++ + +++ P+ V +G S D V LG +Q
Sbjct: 115 AKIGFRHGRHAW--EVIWEGPLGT---------VAVIGISTKDAALQCHGYVALLGSDDQ 163
Query: 135 SFGFGGT-GKFSHGGN------FLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLG 187
S+G+ H G+ L+ K+ VG+ I +D + T+ F KN ++LG
Sbjct: 164 SWGWNLVENHLLHNGDMQGSYPLLSNAPKYQVGERIRVILDCDDN---TLSFEKNYEFLG 220
Query: 188 TA 189
A
Sbjct: 221 VA 222
>sp|Q6PJ21|SPSB3_HUMAN SPRY domain-containing SOCS box protein 3 OS=Homo sapiens GN=SPSB3
PE=1 SV=2
Length = 355
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 129 LGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGT 188
LG E S+G TG H G+ +F +FG G I +D T+ F KN K +G
Sbjct: 186 LGRDEDSWGLSYTGLLHHKGDKTSFSSRFGQGSIIGVHLDTWH---GTLTFFKNRKCIGV 242
Query: 189 A------KQFDAGSNGLGVVDSAVKERQCESAV 215
A K+F S R C SA
Sbjct: 243 AATKLQNKRFYPMVCSTAARSSMKVTRSCASAT 275
>sp|O88838|SPSB2_MOUSE SPRY domain-containing SOCS box protein 2 OS=Mus musculus GN=Spsb2
PE=1 SV=1
Length = 264
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 27/156 (17%)
Query: 47 NPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMED 106
NP DC + D+++ GL + A G R G + G + + + P++
Sbjct: 49 NPKDCSENIDVKEGGLC---FERRPVAQSTDGVRGKRGYSRGLHAWEI----SWPLEQRG 101
Query: 107 TPPDQQHVCRVGTS----RGDDPVGKLGETEQSFGFG-GTGKFSHGGNFLNF-------- 153
T V V T+ + D LG +S+G+ G GK H L
Sbjct: 102 T----HAVVGVATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQ 157
Query: 154 GEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
GE+ V + ++ +D+E T+G++ G +LG A
Sbjct: 158 GEQLVVPERLLVVLDMEE---GTLGYSIGGTYLGPA 190
>sp|Q5M877|SPSB2_RAT SPRY domain-containing SOCS box protein 2 OS=Rattus norvegicus
GN=Spsb2 PE=2 SV=1
Length = 264
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 27/156 (17%)
Query: 47 NPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMED 106
NP DC + D+++ GL + A G R G + G + + + P++
Sbjct: 49 NPKDCSENIDVKEGGLC---FERRPVAQSTDGVRGKRGYSRGLHAWEI----SWPLEQRG 101
Query: 107 TPPDQQHVCRVGTS----RGDDPVGKLGETEQSFGFG-GTGKFSHGGNFLNF-------- 153
T V V T+ + D LG +S+G+ G GK H L
Sbjct: 102 T----HAVVGVATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQ 157
Query: 154 GEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
GE+ V + ++ +D+E T+G++ G +LG A
Sbjct: 158 GEQLVVPERLLVVLDMEE---GTLGYSIGGTYLGPA 190
>sp|Q99619|SPSB2_HUMAN SPRY domain-containing SOCS box protein 2 OS=Homo sapiens GN=SPSB2
PE=1 SV=1
Length = 263
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 27/162 (16%)
Query: 41 KQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQ 100
++R NP DC + ++++ GL + A GAR G + G + + +
Sbjct: 43 QRRHGWNPKDCSENIEVKEGGLY---FERRPVAQSTDGARGKRGYSRGLHAWEI----SW 95
Query: 101 PVDMEDTPPDQQHVCRVGTS----RGDDPVGKLGETEQSFGFG-GTGKFSH---GGNFLN 152
P++ T V V T+ + D LG +S+G+ G GK H G
Sbjct: 96 PLEQRGT----HAVVGVATALAPLQTDHYAALLGSNSESWGWDIGRGKLYHQSKGPGAPQ 151
Query: 153 F-----GEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
+ GE+ V + ++ +D+E T+G+A G +LG A
Sbjct: 152 YPAGTQGEQLEVPERLLVVLDMEE---GTLGYAIGGTYLGPA 190
>sp|Q571F5|SPSB3_MOUSE SPRY domain-containing SOCS box protein 3 OS=Mus musculus GN=Spsb3
PE=2 SV=2
Length = 354
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 129 LGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGT 188
LG E S+G TG H G+ +F +FG G I +D T+ F KN K +G
Sbjct: 186 LGRDEDSWGLSYTGLLHHKGDKTSFSSRFGQGSIIGVHLDTWH---GTLTFFKNRKCIGV 242
Query: 189 A 189
A
Sbjct: 243 A 243
>sp|Q28DT9|SPSB3_XENTR SPRY domain-containing SOCS box protein 3 OS=Xenopus tropicalis
GN=spsb3 PE=2 SV=1
Length = 360
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 129 LGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGT 188
LG+ +S+G TG H G+ NF +FG G I +D + F KN K +G
Sbjct: 186 LGKDAESWGLSYTGLLQHKGDKSNFSSRFGQGSIIGVHLDTWH---GVLTFYKNRKCIGV 242
Query: 189 A 189
A
Sbjct: 243 A 243
>sp|Q3MHZ2|SPSB3_BOVIN SPRY domain-containing SOCS box protein 3 OS=Bos taurus GN=SPSB3
PE=2 SV=1
Length = 345
Score = 35.8 bits (81), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 129 LGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGT 188
LG E S+G TG H G+ +F +FG G I +D T+ F KN K +G
Sbjct: 185 LGRDEDSWGLSYTGLLHHKGDKTSFSSRFGQGSIIGVHLDTWH---GTLTFFKNRKCIGV 241
Query: 189 A 189
A
Sbjct: 242 A 242
>sp|Q4Z8K6|RBP9X_DROME Ran-binding proteins 9/10 homolog OS=Drosophila melanogaster
GN=RanBPM PE=1 SV=1
Length = 962
Score = 35.8 bits (81), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 130 GETEQSFGFGGT--GKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLG 187
G +QS+G+ G FS GN +G F GD I C ++ + T + KNG LG
Sbjct: 499 GWDKQSYGYHGDDGNSFSSSGNGQTYGPTFTTGDVIGCCVNFVNN---TCFYTKNGVDLG 555
Query: 188 TA 189
A
Sbjct: 556 IA 557
>sp|O94712|YC5C_SCHPO Uncharacterized protein C1259.12c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1259.12c PE=4 SV=2
Length = 491
Score = 35.8 bits (81), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 117 VGTSRGDDPVGKL-GETEQSFGFGGTG--KFSHGGNFLNFGEKFGVGDTIICAIDLESKP 173
VG R +L G T +S+G+ G KF+ +G +F GD I C ++ ++
Sbjct: 139 VGFCRKSMQTNRLPGCTAESWGYHGNSGEKFNCSKTGEAYGPEFTTGDIIGCGVNFINR- 197
Query: 174 LATIGFAKNGKWLGTA 189
TI + KNG +LG A
Sbjct: 198 --TIFYTKNGAYLGVA 211
>sp|Q5M9B1|SPSB3_XENLA SPRY domain-containing SOCS box protein 3 OS=Xenopus laevis
GN=spsb3 PE=2 SV=1
Length = 360
Score = 35.4 bits (80), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 129 LGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGT 188
LG+ +S+G TG H G+ NF +FG G I +D + F KN K +G
Sbjct: 186 LGKDAESWGLSYTGLLQHKGDKSNFSSRFGQGSIIGVHLDTWH---GVLTFYKNRKRIGV 242
Query: 189 A 189
A
Sbjct: 243 A 243
>sp|Q58933|PSTK_METJA L-seryl-tRNA(Sec) kinase OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=pstK PE=1 SV=2
Length = 248
Score = 35.4 bits (80), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 78/166 (46%), Gaps = 30/166 (18%)
Query: 268 VMMMVGLPASGKTTWAEKWVKDHPEKRY--ILLGTNLILEQMKVPGLLRKHNYSERFQCL 325
++++ GLP GK+T+++ K + I+LG++LI E V + E+++
Sbjct: 2 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV--------WKEKYEEF 53
Query: 326 MGRANA-IFDVLLSRASRTPRNF--IIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPE- 381
+ ++ + D L +N+ I+D TN + S R+ + + + K +++ K
Sbjct: 54 IKKSTYRLIDSAL-------KNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASL 106
Query: 382 DLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPGSDELFDQ 427
D+ IR R E G+++P + + M + D PG +D+
Sbjct: 107 DVLIR---RNIERGEKIPNEVIKKMYEKF------DEPGKKYKWDE 143
>sp|Q7ZXY1|FBSP1_XENLA F-box/SPRY domain-containing protein 1 OS=Xenopus laevis GN=fbxo45
PE=2 SV=1
Length = 280
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 30/157 (19%)
Query: 46 LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDME 105
L+ +DC + I+ NG LH+ A GAR +G + G++ + ++ P+
Sbjct: 108 LSSSDCSRNVFIKKNGFT---LHRNPIAQSTDGARTKIGFSEGRHAW--EVWWEGPLGT- 161
Query: 106 DTPPDQQHVCRVGTSRGDDP------VGKLGETEQSFGFGGT-GKFSHGGNF------LN 152
V +G + P V LG +QS+G+ H G N
Sbjct: 162 --------VAVIGIATKQAPMQCQGYVALLGSDDQSWGWNLVDNNLLHNGEVNGSFPQCN 213
Query: 153 FGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
K+ +G+ I +D+E K LA F + ++LG A
Sbjct: 214 NAPKYQIGERIRVILDMEDKTLA---FERGYEYLGVA 247
>sp|P0C2W1|FBSP1_HUMAN F-box/SPRY domain-containing protein 1 OS=Homo sapiens GN=FBXO45
PE=1 SV=1
Length = 286
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 59/151 (39%), Gaps = 26/151 (17%)
Query: 50 DCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPP 109
DC + I+ NG LH+ A GAR +G + G++ + + P
Sbjct: 118 DCSRNVYIKKNGFT---LHRNPIAQSTDGARTKIGFSEGRHAWEV---------WWEGPL 165
Query: 110 DQQHVCRVGTSRG----DDPVGKLGETEQSFGFGGT-GKFSHGGNF------LNFGEKFG 158
V + T R V LG +QS+G+ H G N K+
Sbjct: 166 GTVAVIGIATKRAPMQCQGYVALLGSDDQSWGWNLVDNNLLHNGEVNGSFPQCNNAPKYQ 225
Query: 159 VGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
+G+ I +D+E K LA F + ++LG A
Sbjct: 226 IGERIRVILDMEDKTLA---FERGYEFLGVA 253
>sp|Q8K3B1|FBSP1_MOUSE F-box/SPRY domain-containing protein 1 OS=Mus musculus GN=Fbxo45
PE=1 SV=2
Length = 286
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 26/183 (14%)
Query: 18 SVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWS 77
S+ ++A D + + + + + + + DC + I+ NG LH+ A
Sbjct: 86 SLAEEALRTDILCNLPSYKAKVRAFQHAFSTNDCSRNVYIKKNGFT---LHRNPIAQSTD 142
Query: 78 GARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRG----DDPVGKLGETE 133
GAR +G + G++ + + P V + T R V LG +
Sbjct: 143 GARTKIGFSEGRHAWEV---------WWEGPLGTVAVIGIATKRAPMQCQGYVALLGSDD 193
Query: 134 QSFGFGGT-GKFSHGGNF------LNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWL 186
QS+G+ H G N K+ +G+ I +D+E K LA F + ++L
Sbjct: 194 QSWGWNLVDNNLLHNGEVNGSFPQCNNAPKYQIGERIRVILDMEDKTLA---FERGYEFL 250
Query: 187 GTA 189
G A
Sbjct: 251 GVA 253
>sp|B4F739|FBSP1_XENTR F-box/SPRY domain-containing protein 1 OS=Xenopus tropicalis
GN=fbxo45 PE=2 SV=2
Length = 282
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 61/155 (39%), Gaps = 26/155 (16%)
Query: 46 LNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDME 105
+ +DC + I+ NG LH+ A GAR +G + G++ +
Sbjct: 110 FSSSDCSRNVYIKKNGFT---LHRNPIAQSTDGARTKIGFSEGRHAWEV---------WW 157
Query: 106 DTPPDQQHVCRVGTSRG----DDPVGKLGETEQSFGFGGT-GKFSHGGNF------LNFG 154
+ P V + T R V LG +QS+G+ H G N
Sbjct: 158 EGPLGTVAVIGIATKRAPMQCQGYVALLGSDDQSWGWNLVDNNLLHNGEVNGSFPQCNNA 217
Query: 155 EKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
K+ +G+ I +D+E K LA F + ++LG A
Sbjct: 218 PKYQIGERIRVILDMEDKTLA---FERGYEFLGVA 249
>sp|Q6NZ03|FBSP1_DANRE F-box/SPRY domain-containing protein 1 OS=Danio rerio GN=fbxo45
PE=2 SV=2
Length = 291
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 26/183 (14%)
Query: 18 SVVKKAKVDDPVSDSSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWS 77
S+ +A D + + ++ + + + L+ DC + I+ NG LH+ A
Sbjct: 91 SLSDEAMRSDILCNLASYKGKLKSFQHALSSHDCSRNVYIKKNGFT---LHRNPIAQSTD 147
Query: 78 GARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRG----DDPVGKLGETE 133
GAR +G + G++ + + P V + T R V LG +
Sbjct: 148 GARGKIGFSEGRHAWEI---------WWEGPLGTVAVIGIATKRAPMQCQGYVALLGSDD 198
Query: 134 QSFGFGGT-GKFSH----GGNF--LNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWL 186
QS+G+ H GNF N K+ +G+ I +D++ K LA F + ++L
Sbjct: 199 QSWGWNLVDNNLLHNGEVNGNFPQCNNAPKYQIGERIRVILDMDDKTLA---FERGFEFL 255
Query: 187 GTA 189
G A
Sbjct: 256 GVA 258
>sp|P0CH38|FBSP1_RAT F-box/SPRY domain-containing protein 1 (Fragment) OS=Rattus
norvegicus GN=Fbxo45 PE=2 SV=1
Length = 230
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 59/151 (39%), Gaps = 26/151 (17%)
Query: 50 DCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPP 109
DC + I+ NG LH+ A GAR +G + G++ + + P
Sbjct: 62 DCSRNVYIKKNGFT---LHRNPIAQSTDGARTKIGFSEGRHAWEV---------WWEGPL 109
Query: 110 DQQHVCRVGTSRG----DDPVGKLGETEQSFGFGGT-GKFSHGGNF------LNFGEKFG 158
V + T R V LG +QS+G+ H G N K+
Sbjct: 110 GTVAVIGIATKRAPMQCQGYVALLGSDDQSWGWNLVDNNLLHNGEVNGSFPQCNNAPKYQ 169
Query: 159 VGDTIICAIDLESKPLATIGFAKNGKWLGTA 189
+G+ I +D+E K LA F + ++LG A
Sbjct: 170 IGERIRVILDMEDKTLA---FERGYEFLGVA 197
>sp|O60070|ASH2_SCHPO Set1 complex component ash2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ash2 PE=4 SV=1
Length = 652
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 79 ARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPV-GKLGETEQSFG 137
AR+NV + G++ F KI E D R+G SR + P+ +G S+G
Sbjct: 379 ARSNVFMTSGEWYFEIKI--------EKGGGDDGAHVRIGVSRREAPLDAPVGYDAYSYG 430
Query: 138 FGGTG-KFSHGGNFLNFGEKFGVGDTIICAIDLESKPLA 175
G + H NF + FG GD I I L A
Sbjct: 431 LRDLGGQKVHMSRPRNFMDSFGTGDIIGLHISLPKPSFA 469
>sp|P78820|ACAC_SCHPO Acetyl-CoA carboxylase OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=cut6 PE=1 SV=2
Length = 2280
Score = 32.7 bits (73), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 355 FKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRS-VKRFKEMGKEVPADAVNNMLANYVLP 413
+S RK F N R I V P+DLK+ + R + EVP + NN AN L
Sbjct: 85 IRSIRKWAYETFNNERAIKFTVMATPDDLKVNADYIRMADQYVEVPGGSNNNNYANVELI 144
Query: 414 VN 415
V+
Sbjct: 145 VD 146
>sp|Q13459|MYO9B_HUMAN Unconventional myosin-IXb OS=Homo sapiens GN=MYO9B PE=1 SV=3
Length = 2157
Score = 32.7 bits (73), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 18/94 (19%)
Query: 287 VKDHPEKRYILLGTNLILEQMKVPGLL-----RKHNYS---------ERFQCLMGR---- 328
++ + EK+ + L+L+Q++ G+L R+ YS E+FQ L+ +
Sbjct: 853 IRSNAEKKELCFDDELVLQQLRYTGMLETVRIRRSGYSAKYTFQDFTEQFQVLLPKDAQP 912
Query: 329 ANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRK 362
+ LL + RN+ I +T VF +R+
Sbjct: 913 CREVISTLLEKMKIDKRNYQIGKTKVFLKETERQ 946
>sp|Q5YVJ4|KATG_NOCFA Catalase-peroxidase OS=Nocardia farcinica (strain IFM 10152)
GN=katG PE=3 SV=1
Length = 739
Score = 32.0 bits (71), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 113 HVCRVGTSRGDDPVGKLGETEQSFGFGG-----TGKFSHGGNFLNFGEKFGVGDTIICAI 167
+V G + DP+ + + +FG G T GG+ FG+ G GD +
Sbjct: 229 YVNPEGPNGNPDPLAAAVDIKDTFGRMGMTVEETVALIAGGH--TFGKTHGAGDAALVGA 286
Query: 168 DLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVV 202
+ E+ PL +G GT K DA ++GL VV
Sbjct: 287 EPEAAPLEQMGLGWKSS-HGTGKGADAITSGLEVV 320
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,162,717
Number of Sequences: 539616
Number of extensions: 7927927
Number of successful extensions: 17898
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 17830
Number of HSP's gapped (non-prelim): 54
length of query: 435
length of database: 191,569,459
effective HSP length: 120
effective length of query: 315
effective length of database: 126,815,539
effective search space: 39946894785
effective search space used: 39946894785
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)