Query 013831
Match_columns 435
No_of_seqs 315 out of 1830
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 07:49:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013831.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013831hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0349 Putative DEAD-box RNA 100.0 1.9E-36 4.2E-41 296.4 13.0 174 42-250 87-262 (725)
2 KOG2626 Histone H3 (Lys4) meth 100.0 4.1E-30 8.8E-35 258.1 11.8 166 42-239 291-500 (544)
3 PF00622 SPRY: SPRY domain; I 99.9 5.3E-21 1.1E-25 163.5 14.9 116 87-234 1-124 (124)
4 smart00449 SPRY Domain in SPla 99.9 9E-21 1.9E-25 162.1 14.8 114 87-232 1-121 (122)
5 PF13671 AAA_33: AAA domain; P 99.8 3.5E-20 7.5E-25 162.4 16.6 139 268-413 1-143 (143)
6 TIGR01663 PNK-3'Pase polynucle 99.8 3.6E-19 7.7E-24 186.1 18.6 137 263-432 366-506 (526)
7 KOG2242 Scaffold/matrix specif 99.8 7.9E-22 1.7E-26 206.5 -5.2 368 32-415 27-397 (558)
8 COG4639 Predicted kinase [Gene 99.8 3.6E-18 7.8E-23 148.5 14.0 128 266-409 2-132 (168)
9 COG4088 Predicted nucleotide k 99.8 1.1E-17 2.4E-22 151.6 13.5 138 266-415 1-143 (261)
10 PF08433 KTI12: Chromatin asso 99.7 1.6E-17 3.5E-22 161.1 14.7 138 266-415 1-142 (270)
11 KOG4030 Uncharacterized conser 99.7 2.5E-16 5.4E-21 134.9 16.3 166 34-245 18-190 (197)
12 TIGR03574 selen_PSTK L-seryl-t 99.7 2.5E-16 5.3E-21 151.6 15.5 133 268-415 1-137 (249)
13 PHA02530 pseT polynucleotide k 99.7 4.3E-16 9.4E-21 153.7 16.4 140 266-413 2-143 (300)
14 KOG2243 Ca2+ release channel ( 99.7 5.8E-17 1.3E-21 172.9 10.0 148 76-250 1092-1251(5019)
15 KOG3953 SOCS box protein SSB-1 99.7 8.3E-16 1.8E-20 140.9 13.3 166 37-235 20-201 (242)
16 COG0645 Predicted kinase [Gene 99.7 4.3E-15 9.3E-20 131.7 16.4 155 267-428 2-161 (170)
17 PRK06762 hypothetical protein; 99.6 2.9E-15 6.3E-20 135.0 10.9 134 266-414 2-138 (166)
18 cd02021 GntK Gluconate kinase 99.6 2.2E-14 4.9E-19 126.9 13.9 134 268-415 1-140 (150)
19 TIGR03575 selen_PSTK_euk L-ser 99.5 2.4E-13 5.1E-18 135.5 15.5 144 268-416 1-197 (340)
20 PF01591 6PF2K: 6-phosphofruct 99.5 9.2E-13 2E-17 123.8 15.6 145 265-411 11-169 (222)
21 cd00227 CPT Chloramphenicol (C 99.4 1.9E-12 4.1E-17 117.9 14.5 123 266-391 2-132 (175)
22 PF06414 Zeta_toxin: Zeta toxi 99.4 1.4E-13 3E-18 128.0 6.5 142 263-404 12-161 (199)
23 TIGR01313 therm_gnt_kin carboh 99.4 2.9E-12 6.4E-17 115.0 13.6 129 269-415 1-136 (163)
24 PRK12339 2-phosphoglycerate ki 99.4 1.9E-11 4.1E-16 113.4 15.9 129 265-400 2-150 (197)
25 KOG3062 RNA polymerase II elon 99.3 7.2E-12 1.6E-16 115.2 9.7 141 267-415 2-147 (281)
26 cd02027 APSK Adenosine 5'-phos 99.3 2.4E-11 5.3E-16 107.8 12.2 112 268-389 1-116 (149)
27 KOG3354 Gluconate kinase [Carb 99.3 4.1E-11 9E-16 104.3 13.0 141 263-417 9-162 (191)
28 KOG2243 Ca2+ release channel ( 99.2 4E-12 8.6E-17 136.8 3.4 151 74-249 656-832 (5019)
29 TIGR01359 UMP_CMP_kin_fam UMP- 99.2 2.6E-10 5.7E-15 104.2 13.8 117 268-392 1-126 (183)
30 TIGR00455 apsK adenylylsulfate 99.2 2E-10 4.3E-15 105.4 12.9 114 265-388 17-134 (184)
31 KOG4367 Predicted Zn-finger pr 99.2 2.4E-10 5.2E-15 112.9 13.7 154 44-233 535-695 (699)
32 PF01583 APS_kinase: Adenylyls 99.2 1.5E-10 3.2E-15 103.0 10.9 111 266-387 2-117 (156)
33 COG4185 Uncharacterized protei 99.1 6E-10 1.3E-14 97.7 12.4 132 266-409 2-136 (187)
34 PRK14527 adenylate kinase; Pro 99.1 8.9E-10 1.9E-14 101.7 13.4 140 265-411 5-154 (191)
35 PRK11545 gntK gluconate kinase 99.1 1.3E-09 2.9E-14 98.1 13.1 126 272-417 1-135 (163)
36 COG3265 GntK Gluconate kinase 99.1 1.7E-09 3.7E-14 93.8 12.8 127 272-415 1-133 (161)
37 PF07931 CPT: Chloramphenicol 99.1 1.3E-09 2.8E-14 99.0 11.9 121 267-390 2-130 (174)
38 PRK14531 adenylate kinase; Pro 99.1 2.2E-09 4.7E-14 98.5 13.4 132 268-410 4-145 (183)
39 PRK09825 idnK D-gluconate kina 99.1 3.5E-09 7.5E-14 96.7 14.4 133 266-416 3-142 (176)
40 PRK14532 adenylate kinase; Pro 99.0 3E-09 6.4E-14 97.8 13.3 114 269-391 3-128 (188)
41 PRK00889 adenylylsulfate kinas 99.0 2.9E-09 6.2E-14 96.8 12.4 111 265-387 3-117 (175)
42 PRK12337 2-phosphoglycerate ki 99.0 6.6E-09 1.4E-13 106.7 15.4 125 264-394 253-408 (475)
43 PRK05537 bifunctional sulfate 99.0 5E-09 1.1E-13 111.9 13.6 115 265-388 391-510 (568)
44 PLN02200 adenylate kinase fami 99.0 1.3E-08 2.8E-13 97.1 14.9 119 262-391 39-167 (234)
45 TIGR01360 aden_kin_iso1 adenyl 99.0 1.3E-08 2.8E-13 93.0 14.2 115 265-391 2-128 (188)
46 COG0529 CysC Adenylylsulfate k 99.0 1.3E-08 2.8E-13 91.0 13.2 114 263-387 20-138 (197)
47 PRK05506 bifunctional sulfate 98.9 7.5E-09 1.6E-13 112.5 13.9 113 265-387 459-575 (632)
48 KOG4622 Predicted nucleotide k 98.9 1.6E-09 3.4E-14 97.8 6.9 143 267-415 2-165 (291)
49 cd01428 ADK Adenylate kinase ( 98.9 2.8E-08 6E-13 91.4 14.8 116 269-391 2-126 (194)
50 PRK05541 adenylylsulfate kinas 98.9 1.9E-08 4E-13 91.5 13.0 113 265-389 6-121 (176)
51 PTZ00322 6-phosphofructo-2-kin 98.9 2.3E-08 5E-13 109.2 15.9 144 266-411 215-367 (664)
52 PRK01184 hypothetical protein; 98.9 5.7E-08 1.2E-12 88.9 14.7 119 266-391 1-125 (184)
53 PRK12338 hypothetical protein; 98.8 4.5E-08 9.7E-13 96.7 13.9 123 265-392 3-152 (319)
54 PRK03846 adenylylsulfate kinas 98.8 5.6E-08 1.2E-12 90.3 12.8 113 265-386 23-138 (198)
55 PRK00279 adk adenylate kinase; 98.8 7.5E-08 1.6E-12 90.6 13.2 115 269-391 3-128 (215)
56 KOG1477 SPRY domain-containing 98.8 1.4E-08 3.1E-13 105.2 8.3 159 43-232 31-202 (469)
57 KOG2134 Polynucleotide kinase 98.8 8.1E-09 1.8E-13 101.9 5.9 133 266-431 269-405 (422)
58 TIGR01351 adk adenylate kinase 98.8 8.9E-08 1.9E-12 89.7 12.4 114 269-391 2-125 (210)
59 PRK14530 adenylate kinase; Pro 98.7 1.6E-07 3.5E-12 88.3 13.4 117 268-391 5-127 (215)
60 PRK02496 adk adenylate kinase; 98.7 1.3E-07 2.7E-12 86.7 11.2 132 269-411 4-146 (184)
61 PRK00625 shikimate kinase; Pro 98.7 2E-07 4.3E-12 84.8 11.9 36 268-306 2-37 (173)
62 cd00464 SK Shikimate kinase (S 98.7 3.5E-07 7.6E-12 80.8 13.1 107 269-391 2-113 (154)
63 COG0194 Gmk Guanylate kinase [ 98.7 1.5E-07 3.3E-12 85.2 10.7 134 265-413 3-155 (191)
64 PRK13946 shikimate kinase; Pro 98.7 3.7E-07 8E-12 83.8 13.3 130 266-411 10-146 (184)
65 PRK14737 gmk guanylate kinase; 98.7 1.2E-07 2.7E-12 87.3 9.9 128 264-407 2-149 (186)
66 PF13207 AAA_17: AAA domain; P 98.7 6.7E-08 1.5E-12 81.9 7.2 34 268-304 1-34 (121)
67 PRK00131 aroK shikimate kinase 98.6 2.7E-07 5.8E-12 83.1 10.7 39 266-307 4-42 (175)
68 PRK04220 2-phosphoglycerate ki 98.6 6.3E-07 1.4E-11 87.9 13.7 125 264-393 90-238 (301)
69 PF08303 tRNA_lig_kinase: tRNA 98.6 7E-07 1.5E-11 79.4 12.7 138 268-431 1-165 (168)
70 KOG3079 Uridylate kinase/adeny 98.6 8.3E-07 1.8E-11 80.0 13.2 130 264-407 6-151 (195)
71 TIGR02173 cyt_kin_arch cytidyl 98.6 3.3E-07 7.2E-12 82.4 10.5 146 268-435 2-159 (171)
72 PLN02674 adenylate kinase 98.6 1.4E-06 2.9E-11 83.5 14.3 117 267-391 32-159 (244)
73 PRK14528 adenylate kinase; Pro 98.6 1.2E-06 2.7E-11 80.6 13.5 136 267-411 2-150 (186)
74 PRK07261 topology modulation p 98.5 1.3E-07 2.8E-12 85.9 6.1 97 269-391 3-100 (171)
75 COG0563 Adk Adenylate kinase a 98.5 2.3E-06 5E-11 78.2 14.3 114 269-391 3-128 (178)
76 TIGR02322 phosphon_PhnN phosph 98.5 9E-07 1.9E-11 80.6 11.5 127 267-406 2-143 (179)
77 cd02020 CMPK Cytidine monophos 98.5 1.9E-07 4.1E-12 81.6 6.6 142 268-431 1-146 (147)
78 PRK10078 ribose 1,5-bisphospho 98.5 7.9E-07 1.7E-11 81.7 10.9 113 267-390 3-131 (186)
79 cd01672 TMPK Thymidine monopho 98.5 3E-06 6.5E-11 77.7 14.4 121 268-391 2-147 (200)
80 PRK03839 putative kinase; Prov 98.5 4E-07 8.6E-12 83.1 8.2 99 268-391 2-101 (180)
81 PRK13808 adenylate kinase; Pro 98.5 2.5E-06 5.3E-11 85.0 13.8 113 269-391 3-128 (333)
82 PRK06217 hypothetical protein; 98.5 1.8E-07 4E-12 85.7 5.5 103 267-391 2-105 (183)
83 COG1102 Cmk Cytidylate kinase 98.5 2.4E-06 5.2E-11 75.5 12.0 142 268-434 2-157 (179)
84 PRK04040 adenylate kinase; Pro 98.5 1.5E-06 3.3E-11 80.2 11.1 38 266-305 2-40 (188)
85 TIGR03263 guanyl_kin guanylate 98.5 1.1E-06 2.4E-11 79.9 10.1 25 267-291 2-26 (180)
86 PRK14738 gmk guanylate kinase; 98.4 9E-07 2E-11 82.8 9.6 30 261-290 8-37 (206)
87 COG0703 AroK Shikimate kinase 98.4 3.3E-06 7.2E-11 76.0 12.5 106 268-389 4-114 (172)
88 PF00406 ADK: Adenylate kinase 98.4 2.9E-06 6.3E-11 75.1 12.1 108 271-389 1-122 (151)
89 PRK14529 adenylate kinase; Pro 98.4 1.9E-06 4.2E-11 81.4 11.3 115 269-391 3-127 (223)
90 PRK13947 shikimate kinase; Pro 98.4 1.1E-06 2.5E-11 79.1 9.1 37 268-307 3-39 (171)
91 PRK13948 shikimate kinase; Pro 98.4 3E-06 6.5E-11 77.8 11.8 107 265-390 9-123 (182)
92 PRK08118 topology modulation p 98.4 1.6E-06 3.5E-11 78.4 9.5 98 268-392 3-101 (167)
93 PTZ00088 adenylate kinase 1; P 98.4 3E-06 6.5E-11 80.6 11.7 112 269-391 9-131 (229)
94 smart00072 GuKc Guanylate kina 98.4 1.1E-06 2.4E-11 80.6 8.5 115 266-390 2-135 (184)
95 PRK04182 cytidylate kinase; Pr 98.4 8.8E-07 1.9E-11 80.2 7.6 110 268-391 2-113 (180)
96 PRK13949 shikimate kinase; Pro 98.4 4.8E-06 1E-10 75.5 12.0 36 268-306 3-38 (169)
97 PRK06547 hypothetical protein; 98.4 1.4E-06 3E-11 79.2 8.4 114 264-391 13-139 (172)
98 PRK05057 aroK shikimate kinase 98.3 6.7E-06 1.5E-10 74.7 12.0 109 266-390 4-117 (172)
99 PRK00300 gmk guanylate kinase; 98.3 5.3E-06 1.2E-10 77.1 11.4 27 265-291 4-30 (205)
100 PRK14526 adenylate kinase; Pro 98.3 1.6E-06 3.6E-11 81.4 7.6 111 269-391 3-123 (211)
101 PLN02459 probable adenylate ki 98.3 4E-06 8.6E-11 80.8 10.0 111 269-391 32-154 (261)
102 TIGR00041 DTMP_kinase thymidyl 98.3 2E-05 4.3E-10 72.6 14.0 123 266-391 3-149 (195)
103 COG2074 2-phosphoglycerate kin 98.3 2E-05 4.2E-10 74.5 13.8 127 262-394 85-234 (299)
104 PRK06696 uridine kinase; Valid 98.3 4.8E-06 1E-10 78.8 9.9 40 264-303 20-61 (223)
105 cd01673 dNK Deoxyribonucleosid 98.3 9.4E-06 2E-10 74.7 11.4 24 268-291 1-24 (193)
106 PRK08356 hypothetical protein; 98.3 1.5E-05 3.2E-10 73.9 12.6 114 266-391 5-136 (195)
107 PRK13973 thymidylate kinase; P 98.2 2.5E-05 5.4E-10 73.4 13.9 123 266-391 3-150 (213)
108 cd02024 NRK1 Nicotinamide ribo 98.2 3.8E-06 8.3E-11 77.3 7.1 34 268-303 1-34 (187)
109 PRK00698 tmk thymidylate kinas 98.2 3.4E-05 7.4E-10 71.4 13.6 120 266-391 3-149 (205)
110 PRK08233 hypothetical protein; 98.2 1.6E-05 3.4E-10 72.1 10.8 28 266-293 3-30 (182)
111 PRK14730 coaE dephospho-CoA ki 98.2 2.4E-05 5.2E-10 72.6 12.1 38 267-307 2-39 (195)
112 PRK03731 aroL shikimate kinase 98.2 1.7E-05 3.6E-10 71.6 10.7 38 267-307 3-40 (171)
113 KOG0635 Adenosine 5'-phosphosu 98.1 1.7E-05 3.7E-10 69.3 9.6 112 266-387 31-146 (207)
114 PLN02772 guanylate kinase 98.1 2.1E-05 4.5E-10 79.7 11.8 132 265-409 134-282 (398)
115 cd02022 DPCK Dephospho-coenzym 98.1 1.4E-05 3E-10 73.1 9.5 36 268-307 1-36 (179)
116 TIGR00235 udk uridine kinase. 98.1 1.1E-05 2.4E-10 75.3 9.0 41 263-303 3-43 (207)
117 TIGR00152 dephospho-CoA kinase 98.1 3.5E-05 7.6E-10 70.8 11.6 37 268-307 1-37 (188)
118 PTZ00301 uridine kinase; Provi 98.1 1.3E-05 2.8E-10 75.2 8.6 38 266-303 3-44 (210)
119 COG0572 Udk Uridine kinase [Nu 98.1 3.4E-05 7.3E-10 72.1 11.2 39 265-303 7-45 (218)
120 KOG0234 Fructose-6-phosphate 2 98.1 4.2E-05 9E-10 77.8 12.2 141 265-410 27-185 (438)
121 PRK05480 uridine/cytidine kina 98.1 1.7E-05 3.8E-10 74.0 9.0 39 265-303 5-43 (209)
122 PRK00081 coaE dephospho-CoA ki 98.0 4.6E-05 1E-09 70.6 11.5 38 266-307 2-39 (194)
123 PRK06761 hypothetical protein; 98.0 2E-05 4.2E-10 77.0 9.0 121 266-391 3-128 (282)
124 PF13238 AAA_18: AAA domain; P 98.0 4.4E-06 9.4E-11 71.0 3.9 103 269-391 1-113 (129)
125 cd02030 NDUO42 NADH:Ubiquinone 98.0 0.00012 2.6E-09 69.1 14.0 24 268-291 1-24 (219)
126 PF00625 Guanylate_kin: Guanyl 98.0 2.2E-05 4.7E-10 71.9 8.5 115 266-390 2-135 (183)
127 PRK14734 coaE dephospho-CoA ki 98.0 6.9E-05 1.5E-09 69.8 11.6 37 267-307 2-38 (200)
128 PLN02422 dephospho-CoA kinase 98.0 0.00011 2.4E-09 69.9 12.9 37 267-307 2-38 (232)
129 PRK13975 thymidylate kinase; P 98.0 0.00036 7.8E-09 64.2 15.9 26 267-292 3-28 (196)
130 PRK05416 glmZ(sRNA)-inactivati 97.9 0.00011 2.4E-09 72.2 12.5 96 265-389 5-105 (288)
131 PRK08154 anaerobic benzoate ca 97.9 7.5E-05 1.6E-09 74.3 11.4 38 266-306 133-170 (309)
132 PRK13951 bifunctional shikimat 97.9 7.8E-05 1.7E-09 78.6 11.5 36 269-307 3-38 (488)
133 PLN02199 shikimate kinase 97.9 8.6E-05 1.9E-09 72.6 10.2 108 267-389 103-214 (303)
134 cd02028 UMPK_like Uridine mono 97.9 4.4E-05 9.6E-10 69.8 7.6 38 268-305 1-40 (179)
135 PRK14021 bifunctional shikimat 97.8 0.00028 6E-09 75.6 14.6 112 265-390 5-123 (542)
136 PLN02924 thymidylate kinase 97.8 0.00027 5.9E-09 66.8 12.6 119 265-388 15-154 (220)
137 COG3896 Chloramphenicol 3-O-ph 97.8 0.00046 9.9E-09 61.0 12.4 127 262-390 19-160 (205)
138 PRK14731 coaE dephospho-CoA ki 97.8 0.00035 7.6E-09 65.4 12.6 38 266-307 5-42 (208)
139 cd02023 UMPK Uridine monophosp 97.8 0.00012 2.7E-09 67.6 9.5 37 268-304 1-37 (198)
140 cd02025 PanK Pantothenate kina 97.8 8.8E-05 1.9E-09 70.1 8.5 36 268-303 1-40 (220)
141 KOG3347 Predicted nucleotide k 97.8 0.00011 2.4E-09 64.2 7.9 102 269-391 10-114 (176)
142 PRK14733 coaE dephospho-CoA ki 97.7 0.00048 1E-08 64.3 12.5 39 266-307 6-44 (204)
143 PRK14732 coaE dephospho-CoA ki 97.7 0.00017 3.8E-09 66.9 9.3 36 268-307 1-36 (196)
144 PTZ00451 dephospho-CoA kinase; 97.7 0.00026 5.7E-09 67.9 10.7 38 267-307 2-39 (244)
145 PLN02842 nucleotide kinase 97.7 0.00036 7.8E-09 73.2 11.6 32 270-304 1-32 (505)
146 COG1936 Predicted nucleotide k 97.7 0.00024 5.2E-09 63.8 8.6 101 268-390 2-103 (180)
147 COG0237 CoaE Dephospho-CoA kin 97.6 0.00067 1.5E-08 63.2 11.6 36 266-305 2-37 (201)
148 PF00485 PRK: Phosphoribulokin 97.6 6.6E-05 1.4E-09 69.4 4.9 35 268-302 1-41 (194)
149 cd00071 GMPK Guanosine monopho 97.6 0.00018 3.9E-09 62.8 7.3 24 268-291 1-24 (137)
150 PLN02165 adenylate isopentenyl 97.6 0.00036 7.7E-09 69.6 10.2 35 266-303 43-77 (334)
151 COG1428 Deoxynucleoside kinase 97.6 0.00048 1E-08 63.9 10.3 27 266-292 4-30 (216)
152 PRK07667 uridine kinase; Provi 97.6 0.00096 2.1E-08 61.7 12.3 38 266-303 17-56 (193)
153 TIGR00017 cmk cytidylate kinas 97.6 0.00087 1.9E-08 63.2 12.1 35 267-304 3-37 (217)
154 COG3709 Uncharacterized compon 97.6 0.00078 1.7E-08 59.8 10.6 62 337-409 87-150 (192)
155 PRK13974 thymidylate kinase; P 97.5 0.0017 3.7E-08 60.9 13.1 27 266-292 3-29 (212)
156 PF00004 AAA: ATPase family as 97.5 0.00042 9.2E-09 58.8 8.1 34 269-303 1-34 (132)
157 PF02223 Thymidylate_kin: Thym 97.5 0.0017 3.6E-08 59.3 12.6 116 272-392 2-141 (186)
158 PF01202 SKI: Shikimate kinase 97.5 0.00053 1.2E-08 61.2 8.9 100 275-391 1-106 (158)
159 PLN02318 phosphoribulokinase/u 97.5 0.0004 8.7E-09 73.8 9.0 37 265-303 64-100 (656)
160 PRK00091 miaA tRNA delta(2)-is 97.5 0.00045 9.7E-09 68.5 8.7 34 266-302 4-37 (307)
161 PLN02348 phosphoribulokinase 97.4 0.00085 1.8E-08 68.2 10.1 28 264-291 47-74 (395)
162 PF01121 CoaE: Dephospho-CoA k 97.4 0.0023 4.9E-08 58.6 11.9 36 268-307 2-37 (180)
163 PRK05439 pantothenate kinase; 97.4 0.00058 1.3E-08 67.7 8.5 42 262-303 82-127 (311)
164 cd02019 NK Nucleoside/nucleoti 97.4 0.00018 3.8E-09 55.1 3.7 32 268-299 1-32 (69)
165 PRK09087 hypothetical protein; 97.4 0.00051 1.1E-08 65.2 7.5 134 267-411 45-186 (226)
166 PRK13976 thymidylate kinase; P 97.3 0.0046 9.9E-08 58.0 13.0 118 268-390 2-145 (209)
167 PRK07933 thymidylate kinase; V 97.3 0.0085 1.8E-07 56.3 14.9 120 268-391 2-154 (213)
168 PRK13477 bifunctional pantoate 97.3 0.0008 1.7E-08 71.0 8.7 39 266-307 284-322 (512)
169 PRK05800 cobU adenosylcobinami 97.3 0.00091 2E-08 60.7 7.4 32 268-300 3-34 (170)
170 PRK09270 nucleoside triphospha 97.3 0.0022 4.8E-08 60.8 10.5 28 264-291 31-58 (229)
171 PRK08903 DnaA regulatory inact 97.2 0.003 6.5E-08 59.7 11.2 142 266-410 42-189 (227)
172 PRK03333 coaE dephospho-CoA ki 97.2 0.0019 4.2E-08 66.4 10.3 37 267-307 2-38 (395)
173 PRK08084 DNA replication initi 97.2 0.004 8.8E-08 59.4 11.6 137 267-411 46-200 (235)
174 PRK07429 phosphoribulokinase; 97.2 0.0057 1.2E-07 61.3 13.1 39 265-303 7-45 (327)
175 PF01745 IPT: Isopentenyl tran 97.2 0.0008 1.7E-08 62.6 5.9 155 266-430 1-180 (233)
176 cd03115 SRP The signal recogni 97.1 0.00096 2.1E-08 60.2 6.2 35 268-302 2-38 (173)
177 TIGR01425 SRP54_euk signal rec 97.1 0.0023 5E-08 66.1 9.2 41 264-304 98-140 (429)
178 PHA00729 NTP-binding motif con 97.1 0.0055 1.2E-07 57.9 10.7 25 266-290 17-41 (226)
179 COG0125 Tmk Thymidylate kinase 97.0 0.012 2.7E-07 55.0 12.9 122 266-391 3-149 (208)
180 cd02026 PRK Phosphoribulokinas 97.0 0.0049 1.1E-07 60.3 10.5 36 268-303 1-36 (273)
181 PRK06893 DNA replication initi 97.0 0.0077 1.7E-07 57.2 11.6 23 267-289 40-62 (229)
182 KOG3220 Similar to bacterial d 97.0 0.017 3.8E-07 53.2 13.1 113 267-391 2-147 (225)
183 KOG3078 Adenylate kinase [Nucl 97.0 0.0042 9E-08 58.8 9.4 114 266-390 15-138 (235)
184 COG0541 Ffh Signal recognition 97.0 0.0026 5.7E-08 64.9 8.4 41 263-303 97-139 (451)
185 TIGR00959 ffh signal recogniti 97.0 0.0024 5.2E-08 66.2 8.4 40 264-303 97-139 (428)
186 PF03668 ATP_bind_2: P-loop AT 97.0 0.0073 1.6E-07 58.8 11.1 96 266-389 1-101 (284)
187 PRK14086 dnaA chromosomal repl 97.0 0.012 2.5E-07 63.4 13.6 143 268-411 316-479 (617)
188 PRK10867 signal recognition pa 96.9 0.0028 6E-08 65.8 8.4 39 265-303 99-140 (433)
189 PRK00023 cmk cytidylate kinase 96.9 0.005 1.1E-07 58.4 9.4 37 266-305 4-40 (225)
190 TIGR03420 DnaA_homol_Hda DnaA 96.9 0.0084 1.8E-07 56.3 10.9 38 266-303 38-77 (226)
191 KOG1477 SPRY domain-containing 96.9 0.00043 9.3E-09 72.3 2.0 52 137-191 2-55 (469)
192 smart00382 AAA ATPases associa 96.9 0.001 2.2E-08 56.1 4.0 37 266-302 2-40 (148)
193 PHA03132 thymidine kinase; Pro 96.9 0.015 3.3E-07 62.1 13.6 25 266-290 257-281 (580)
194 TIGR01618 phage_P_loop phage n 96.9 0.0018 3.9E-08 61.2 5.8 74 266-351 12-89 (220)
195 PRK06620 hypothetical protein; 96.9 0.0076 1.6E-07 56.7 10.0 130 267-411 45-180 (214)
196 PRK05642 DNA replication initi 96.9 0.0099 2.2E-07 56.7 10.9 135 267-411 46-199 (234)
197 PF13521 AAA_28: AAA domain; P 96.9 0.0024 5.2E-08 57.1 6.2 21 269-289 2-22 (163)
198 PRK00149 dnaA chromosomal repl 96.8 0.026 5.7E-07 59.1 14.7 144 267-411 149-313 (450)
199 PRK14974 cell division protein 96.8 0.0029 6.3E-08 63.6 7.0 39 265-303 139-179 (336)
200 PF00448 SRP54: SRP54-type pro 96.8 0.0018 3.9E-08 60.1 5.1 37 266-302 1-39 (196)
201 cd01130 VirB11-like_ATPase Typ 96.8 0.0043 9.4E-08 56.9 7.6 139 266-411 25-167 (186)
202 cd00009 AAA The AAA+ (ATPases 96.8 0.019 4.2E-07 48.6 11.3 25 266-290 19-43 (151)
203 PRK08099 bifunctional DNA-bind 96.8 0.0041 8.9E-08 64.0 8.1 44 265-308 218-261 (399)
204 PRK14088 dnaA chromosomal repl 96.7 0.037 8.1E-07 57.8 14.8 39 268-306 132-174 (440)
205 COG2019 AdkA Archaeal adenylat 96.7 0.022 4.7E-07 51.1 10.8 35 266-303 4-39 (189)
206 TIGR00362 DnaA chromosomal rep 96.7 0.031 6.7E-07 57.7 13.8 144 267-411 137-301 (405)
207 TIGR02881 spore_V_K stage V sp 96.7 0.04 8.7E-07 53.3 13.7 23 267-289 43-65 (261)
208 PRK10416 signal recognition pa 96.7 0.0083 1.8E-07 59.9 9.0 40 264-303 112-153 (318)
209 PLN03025 replication factor C 96.6 0.0071 1.5E-07 60.4 8.4 22 269-290 37-58 (319)
210 PF13245 AAA_19: Part of AAA d 96.6 0.003 6.5E-08 49.4 4.4 22 266-287 10-31 (76)
211 PRK00771 signal recognition pa 96.6 0.012 2.7E-07 61.1 10.2 39 265-303 94-134 (437)
212 PRK08727 hypothetical protein; 96.6 0.035 7.6E-07 52.9 12.4 137 267-411 42-195 (233)
213 PRK14962 DNA polymerase III su 96.6 0.026 5.5E-07 59.5 12.4 26 266-291 36-61 (472)
214 CHL00181 cbbX CbbX; Provisiona 96.6 0.024 5.1E-07 55.9 11.5 38 267-304 60-103 (287)
215 KOG0738 AAA+-type ATPase [Post 96.6 0.036 7.9E-07 55.9 12.5 36 267-303 246-281 (491)
216 cd03228 ABCC_MRP_Like The MRP 96.5 0.035 7.5E-07 50.0 11.6 116 266-383 28-158 (171)
217 PF13173 AAA_14: AAA domain 96.5 0.018 3.9E-07 49.3 9.2 92 267-378 3-96 (128)
218 TIGR00554 panK_bact pantothena 96.5 0.0025 5.4E-08 62.7 4.2 40 263-302 59-102 (290)
219 TIGR02640 gas_vesic_GvpN gas v 96.5 0.0088 1.9E-07 58.0 8.0 32 267-299 22-53 (262)
220 KOG3877 NADH:ubiquinone oxidor 96.5 0.041 8.9E-07 53.1 12.0 26 266-291 71-96 (393)
221 PF00308 Bac_DnaA: Bacterial d 96.5 0.025 5.5E-07 53.4 10.7 137 267-411 35-199 (219)
222 PF05496 RuvB_N: Holliday junc 96.5 0.011 2.3E-07 55.8 7.8 33 267-300 51-83 (233)
223 cd03246 ABCC_Protease_Secretio 96.5 0.031 6.7E-07 50.5 10.8 112 266-379 28-154 (173)
224 PRK11860 bifunctional 3-phosph 96.4 0.033 7.2E-07 61.2 12.5 39 266-307 442-480 (661)
225 PRK13900 type IV secretion sys 96.4 0.017 3.6E-07 58.1 9.2 140 266-411 160-304 (332)
226 smart00763 AAA_PrkA PrkA AAA d 96.4 0.0025 5.4E-08 64.2 3.2 26 266-291 78-103 (361)
227 KOG3308 Uncharacterized protei 96.4 0.0087 1.9E-07 55.1 6.3 37 266-304 4-40 (225)
228 TIGR03015 pepcterm_ATPase puta 96.3 0.045 9.9E-07 52.7 11.9 26 266-291 43-68 (269)
229 KOG1384 tRNA delta(2)-isopente 96.3 0.038 8.2E-07 54.6 11.0 113 266-391 7-159 (348)
230 PRK08116 hypothetical protein; 96.3 0.034 7.3E-07 54.2 10.8 41 267-307 115-157 (268)
231 TIGR00174 miaA tRNA isopenteny 96.3 0.0026 5.7E-08 62.4 2.9 33 268-303 1-33 (287)
232 PRK14956 DNA polymerase III su 96.3 0.065 1.4E-06 56.2 13.2 26 266-291 40-65 (484)
233 COG2884 FtsE Predicted ATPase 96.3 0.08 1.7E-06 48.7 11.9 56 336-391 147-207 (223)
234 KOG0780 Signal recognition par 96.2 0.016 3.4E-07 58.3 8.0 101 261-367 96-206 (483)
235 PRK12422 chromosomal replicati 96.2 0.074 1.6E-06 55.6 13.5 38 267-304 142-181 (445)
236 cd03230 ABC_DR_subfamily_A Thi 96.2 0.075 1.6E-06 47.9 11.9 113 266-380 26-154 (173)
237 COG0552 FtsY Signal recognitio 96.2 0.026 5.6E-07 56.0 9.0 97 263-368 136-245 (340)
238 cd03238 ABC_UvrA The excision 96.1 0.076 1.7E-06 48.4 11.5 108 265-380 20-148 (176)
239 PF07728 AAA_5: AAA domain (dy 96.1 0.005 1.1E-07 53.3 3.5 24 269-292 2-25 (139)
240 PRK15453 phosphoribulokinase; 96.1 0.0052 1.1E-07 59.9 3.8 39 266-304 5-45 (290)
241 PRK12377 putative replication 96.1 0.057 1.2E-06 52.0 11.0 106 267-389 102-216 (248)
242 PRK13695 putative NTPase; Prov 96.1 0.056 1.2E-06 48.8 10.3 22 269-290 3-24 (174)
243 TIGR02880 cbbX_cfxQ probable R 96.1 0.035 7.7E-07 54.5 9.6 37 268-304 60-102 (284)
244 PLN02840 tRNA dimethylallyltra 96.0 0.0066 1.4E-07 62.5 4.1 34 266-302 21-54 (421)
245 PRK12402 replication factor C 96.0 0.055 1.2E-06 53.9 10.7 24 268-291 38-61 (337)
246 TIGR00150 HI0065_YjeE ATPase, 95.9 0.0069 1.5E-07 52.6 3.5 26 266-291 22-47 (133)
247 PRK10751 molybdopterin-guanine 95.9 0.0069 1.5E-07 55.0 3.5 28 264-291 4-31 (173)
248 cd03247 ABCC_cytochrome_bd The 95.9 0.16 3.5E-06 46.0 12.5 117 266-383 28-160 (178)
249 cd03214 ABC_Iron-Siderophores_ 95.9 0.056 1.2E-06 49.1 9.4 107 265-379 24-156 (180)
250 cd01129 PulE-GspE PulE/GspE Th 95.9 0.02 4.4E-07 55.6 6.9 113 266-389 80-195 (264)
251 cd03232 ABC_PDR_domain2 The pl 95.9 0.14 3.1E-06 47.0 12.2 113 266-378 33-165 (192)
252 KOG0741 AAA+-type ATPase [Post 95.8 0.038 8.2E-07 57.8 8.7 118 254-411 241-362 (744)
253 TIGR01526 nadR_NMN_Atrans nico 95.8 0.047 1E-06 54.8 9.3 26 266-291 162-187 (325)
254 PLN02748 tRNA dimethylallyltra 95.8 0.0091 2E-07 62.5 4.3 35 265-302 21-55 (468)
255 PF05729 NACHT: NACHT domain 95.8 0.0059 1.3E-07 53.7 2.6 24 267-290 1-24 (166)
256 COG3911 Predicted ATPase [Gene 95.8 0.055 1.2E-06 47.7 8.3 42 265-307 8-49 (183)
257 COG1126 GlnQ ABC-type polar am 95.8 0.0068 1.5E-07 56.6 2.9 24 265-288 27-50 (240)
258 cd03229 ABC_Class3 This class 95.8 0.12 2.7E-06 46.7 11.2 114 266-379 26-159 (178)
259 PF01695 IstB_IS21: IstB-like 95.8 0.032 7E-07 50.9 7.2 43 266-308 47-91 (178)
260 KOG0739 AAA+-type ATPase [Post 95.7 0.032 7E-07 54.4 7.4 37 267-304 167-203 (439)
261 PF13401 AAA_22: AAA domain; P 95.7 0.0064 1.4E-07 51.7 2.4 26 265-290 3-28 (131)
262 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.7 0.19 4.1E-06 44.0 11.8 97 266-379 26-125 (144)
263 COG2256 MGS1 ATPase related to 95.7 0.053 1.1E-06 55.0 9.1 34 266-300 48-81 (436)
264 PRK03992 proteasome-activating 95.7 0.029 6.3E-07 57.7 7.5 38 266-304 165-202 (389)
265 PRK13342 recombination factor 95.7 0.12 2.5E-06 53.7 12.0 32 267-299 37-68 (413)
266 KOG0744 AAA+-type ATPase [Post 95.7 0.043 9.3E-07 54.2 8.1 26 266-291 177-202 (423)
267 TIGR00064 ftsY signal recognit 95.7 0.01 2.3E-07 57.9 4.0 40 263-302 69-110 (272)
268 cd01122 GP4d_helicase GP4d_hel 95.7 0.1 2.2E-06 50.5 10.9 36 265-300 29-67 (271)
269 PHA02544 44 clamp loader, smal 95.7 0.12 2.7E-06 51.1 11.7 27 265-291 42-68 (316)
270 PF03029 ATP_bind_1: Conserved 95.7 0.0077 1.7E-07 57.6 2.9 31 271-301 1-33 (238)
271 COG1222 RPT1 ATP-dependent 26S 95.7 0.072 1.6E-06 53.4 9.6 93 266-377 185-296 (406)
272 cd03222 ABC_RNaseL_inhibitor T 95.7 0.054 1.2E-06 49.4 8.3 110 266-390 25-141 (177)
273 PRK13833 conjugal transfer pro 95.7 0.073 1.6E-06 53.2 9.9 113 267-391 145-263 (323)
274 PRK13894 conjugal transfer ATP 95.6 0.052 1.1E-06 54.2 8.7 115 266-392 148-268 (319)
275 cd00544 CobU Adenosylcobinamid 95.6 0.011 2.5E-07 53.4 3.7 32 268-300 1-32 (169)
276 PRK07952 DNA replication prote 95.6 0.14 3.1E-06 49.2 11.4 41 267-307 100-142 (244)
277 PRK12323 DNA polymerase III su 95.6 0.15 3.3E-06 55.3 12.5 28 264-291 36-63 (700)
278 cd02029 PRK_like Phosphoribulo 95.6 0.0075 1.6E-07 58.4 2.5 37 268-304 1-39 (277)
279 cd03216 ABC_Carb_Monos_I This 95.6 0.17 3.6E-06 45.3 11.2 105 266-380 26-141 (163)
280 PF00437 T2SE: Type II/IV secr 95.6 0.048 1E-06 52.9 8.2 127 266-407 127-257 (270)
281 cd00984 DnaB_C DnaB helicase C 95.6 0.14 3E-06 48.6 11.2 36 265-300 12-50 (242)
282 COG1660 Predicted P-loop-conta 95.6 0.15 3.2E-06 49.0 11.0 98 266-389 1-102 (286)
283 cd03215 ABC_Carb_Monos_II This 95.5 0.17 3.6E-06 46.1 11.2 115 266-380 26-163 (182)
284 PTZ00454 26S protease regulato 95.5 0.047 1E-06 56.2 8.3 34 266-300 179-212 (398)
285 PRK09183 transposase/IS protei 95.5 0.15 3.1E-06 49.5 11.3 24 266-289 102-125 (259)
286 TIGR00635 ruvB Holliday juncti 95.5 0.19 4.1E-06 49.5 12.3 26 266-291 30-55 (305)
287 cd01131 PilT Pilus retraction 95.5 0.01 2.2E-07 55.1 3.0 24 268-291 3-26 (198)
288 PRK07764 DNA polymerase III su 95.5 0.16 3.5E-06 57.0 12.9 27 265-291 36-62 (824)
289 PRK11889 flhF flagellar biosyn 95.5 0.051 1.1E-06 55.6 8.1 39 265-303 240-280 (436)
290 COG1618 Predicted nucleotide k 95.5 0.0093 2E-07 53.2 2.5 25 268-292 7-31 (179)
291 PRK11174 cysteine/glutathione 95.5 0.061 1.3E-06 58.2 9.3 108 266-377 376-509 (588)
292 PF04665 Pox_A32: Poxvirus A32 95.5 0.15 3.3E-06 48.7 10.9 25 268-292 15-39 (241)
293 PF13189 Cytidylate_kin2: Cyti 95.5 0.24 5.1E-06 45.2 11.8 33 268-303 1-33 (179)
294 KOG1969 DNA replication checkp 95.4 0.013 2.8E-07 63.2 3.9 37 263-300 323-359 (877)
295 PF02492 cobW: CobW/HypB/UreG, 95.4 0.019 4.2E-07 52.2 4.6 31 268-298 2-33 (178)
296 PTZ00202 tuzin; Provisional 95.4 0.16 3.5E-06 52.7 11.4 27 265-291 285-311 (550)
297 cd01120 RecA-like_NTPases RecA 95.4 0.011 2.4E-07 51.6 2.8 34 268-301 1-36 (165)
298 PRK14949 DNA polymerase III su 95.4 0.15 3.3E-06 57.1 12.0 27 265-291 37-63 (944)
299 PLN00020 ribulose bisphosphate 95.4 0.072 1.6E-06 54.0 8.7 43 262-305 144-186 (413)
300 TIGR03499 FlhF flagellar biosy 95.4 0.014 3E-07 57.4 3.5 38 265-302 193-234 (282)
301 PLN02796 D-glycerate 3-kinase 95.4 0.016 3.5E-07 58.1 4.1 39 264-302 98-138 (347)
302 TIGR01242 26Sp45 26S proteasom 95.4 0.063 1.4E-06 54.6 8.4 34 266-300 156-189 (364)
303 TIGR01241 FtsH_fam ATP-depende 95.4 0.039 8.5E-07 58.5 7.2 38 266-304 88-125 (495)
304 KOG1532 GTPase XAB1, interacts 95.3 0.069 1.5E-06 51.6 8.0 40 263-302 16-57 (366)
305 KOG4238 Bifunctional ATP sulfu 95.3 0.064 1.4E-06 53.4 8.0 113 267-389 51-169 (627)
306 PHA02575 1 deoxynucleoside mon 95.3 0.023 5E-07 53.6 4.7 37 268-307 2-39 (227)
307 PRK07003 DNA polymerase III su 95.3 0.15 3.3E-06 56.1 11.6 27 265-291 37-63 (830)
308 PF02367 UPF0079: Uncharacteri 95.3 0.019 4.2E-07 49.1 3.9 27 265-291 14-40 (123)
309 PRK04195 replication factor C 95.3 0.084 1.8E-06 55.9 9.5 33 266-299 39-71 (482)
310 KOG0991 Replication factor C, 95.3 0.12 2.5E-06 49.0 9.1 24 267-290 49-72 (333)
311 TIGR02782 TrbB_P P-type conjug 95.3 0.11 2.4E-06 51.5 9.6 114 267-391 133-252 (299)
312 COG0283 Cmk Cytidylate kinase 95.3 0.02 4.3E-07 53.5 4.0 37 267-306 5-41 (222)
313 COG1855 ATPase (PilT family) [ 95.2 0.013 2.7E-07 60.1 2.7 26 266-291 263-288 (604)
314 COG3839 MalK ABC-type sugar tr 95.2 0.15 3.3E-06 51.2 10.3 25 265-289 28-52 (338)
315 PF08477 Miro: Miro-like prote 95.2 0.015 3.4E-07 48.4 2.8 23 269-291 2-24 (119)
316 TIGR01243 CDC48 AAA family ATP 95.2 0.085 1.8E-06 58.8 9.4 37 266-303 212-248 (733)
317 PRK13341 recombination factor 95.2 0.2 4.3E-06 55.5 12.1 24 268-291 54-77 (725)
318 PRK09435 membrane ATPase/prote 95.2 0.018 3.9E-07 57.8 3.7 38 264-301 54-93 (332)
319 PTZ00361 26 proteosome regulat 95.1 0.058 1.3E-06 56.2 7.5 33 266-299 217-249 (438)
320 PRK14964 DNA polymerase III su 95.1 0.2 4.4E-06 52.9 11.6 25 266-290 35-59 (491)
321 PRK12269 bifunctional cytidyla 95.1 0.02 4.4E-07 64.3 4.3 39 267-308 35-73 (863)
322 TIGR02525 plasmid_TraJ plasmid 95.1 0.1 2.2E-06 53.3 9.0 117 267-389 150-271 (372)
323 PF01078 Mg_chelatase: Magnesi 95.1 0.016 3.4E-07 54.1 2.9 25 268-292 24-48 (206)
324 cd03116 MobB Molybdenum is an 95.1 0.016 3.5E-07 51.9 2.9 26 266-291 1-26 (159)
325 cd00820 PEPCK_HprK Phosphoenol 95.1 0.02 4.3E-07 47.8 3.1 22 266-287 15-36 (107)
326 PHA02244 ATPase-like protein 95.1 0.043 9.2E-07 55.7 6.1 30 269-299 122-151 (383)
327 PF13191 AAA_16: AAA ATPase do 95.1 0.016 3.6E-07 52.1 3.0 28 264-291 22-49 (185)
328 TIGR02639 ClpA ATP-dependent C 95.1 0.35 7.6E-06 53.9 14.0 22 269-290 206-227 (731)
329 PLN03046 D-glycerate 3-kinase; 95.1 0.021 4.6E-07 58.6 3.9 38 265-302 211-250 (460)
330 TIGR02868 CydC thiol reductant 95.1 0.1 2.2E-06 55.8 9.3 111 266-378 361-495 (529)
331 CHL00195 ycf46 Ycf46; Provisio 95.1 0.044 9.5E-07 57.9 6.4 36 266-302 259-294 (489)
332 PRK14963 DNA polymerase III su 95.1 0.25 5.3E-06 52.6 12.1 27 265-291 35-61 (504)
333 COG4619 ABC-type uncharacteriz 95.1 0.096 2.1E-06 47.3 7.5 25 266-290 29-53 (223)
334 PRK06921 hypothetical protein; 95.0 0.32 7E-06 47.3 11.9 40 266-305 117-159 (266)
335 PF03266 NTPase_1: NTPase; In 95.0 0.015 3.2E-07 52.7 2.4 22 269-290 2-23 (168)
336 PRK09518 bifunctional cytidyla 95.0 0.014 3.1E-07 64.7 2.6 36 268-306 3-38 (712)
337 PF13479 AAA_24: AAA domain 95.0 0.049 1.1E-06 51.1 5.9 30 266-301 3-32 (213)
338 COG2274 SunT ABC-type bacterio 95.0 0.051 1.1E-06 60.0 6.8 110 266-377 499-633 (709)
339 cd03213 ABCG_EPDR ABCG transpo 95.0 0.37 8E-06 44.3 11.6 112 266-378 35-168 (194)
340 PRK06645 DNA polymerase III su 94.9 0.31 6.7E-06 51.8 12.3 27 265-291 42-68 (507)
341 PRK12724 flagellar biosynthesi 94.9 0.03 6.4E-07 57.8 4.5 38 266-303 223-263 (432)
342 PF00910 RNA_helicase: RNA hel 94.9 0.015 3.3E-07 48.3 2.0 22 269-290 1-22 (107)
343 PRK14722 flhF flagellar biosyn 94.9 0.025 5.5E-07 57.6 3.9 39 265-303 136-178 (374)
344 PRK14087 dnaA chromosomal repl 94.8 0.27 5.8E-06 51.6 11.5 39 268-306 143-185 (450)
345 PRK13764 ATPase; Provisional 94.8 0.085 1.8E-06 57.0 7.9 27 266-292 257-283 (602)
346 cd03112 CobW_like The function 94.8 0.032 7E-07 49.8 4.1 25 268-292 2-26 (158)
347 TIGR01243 CDC48 AAA family ATP 94.8 0.057 1.2E-06 60.2 6.9 38 266-304 487-524 (733)
348 cd01918 HprK_C HprK/P, the bif 94.8 0.024 5.1E-07 50.3 3.0 24 267-290 15-38 (149)
349 KOG0730 AAA+-type ATPase [Post 94.8 0.32 7E-06 52.3 11.9 39 266-305 468-506 (693)
350 KOG0707 Guanylate kinase [Nucl 94.8 0.27 5.9E-06 46.4 10.2 37 266-302 37-73 (231)
351 TIGR02788 VirB11 P-type DNA tr 94.8 0.17 3.7E-06 50.2 9.6 138 266-411 144-289 (308)
352 PRK08181 transposase; Validate 94.8 0.2 4.3E-06 48.9 9.7 41 267-307 107-149 (269)
353 TIGR00750 lao LAO/AO transport 94.8 0.028 6.1E-07 55.7 3.8 38 264-301 32-71 (300)
354 KOG0733 Nuclear AAA ATPase (VC 94.8 0.11 2.4E-06 55.3 8.2 39 266-305 223-261 (802)
355 PF01443 Viral_helicase1: Vira 94.7 0.018 3.9E-07 54.2 2.3 21 269-289 1-21 (234)
356 COG0467 RAD55 RecA-superfamily 94.7 0.056 1.2E-06 52.2 5.8 38 264-301 21-60 (260)
357 COG1132 MdlB ABC-type multidru 94.7 0.066 1.4E-06 57.7 6.9 110 266-377 355-489 (567)
358 PF03205 MobB: Molybdopterin g 94.7 0.023 4.9E-07 49.8 2.7 24 268-291 2-25 (140)
359 TIGR00073 hypB hydrogenase acc 94.7 0.027 5.9E-07 52.5 3.4 30 262-291 18-47 (207)
360 KOG0733 Nuclear AAA ATPase (VC 94.7 0.11 2.3E-06 55.5 7.9 33 266-299 545-577 (802)
361 COG4175 ProV ABC-type proline/ 94.7 0.024 5.2E-07 55.8 3.0 27 264-290 52-78 (386)
362 PRK12723 flagellar biosynthesi 94.7 0.025 5.4E-07 58.0 3.2 39 265-303 173-217 (388)
363 cd04163 Era Era subfamily. Er 94.7 0.026 5.6E-07 49.0 3.0 24 266-289 3-26 (168)
364 TIGR03689 pup_AAA proteasome A 94.7 0.083 1.8E-06 56.0 7.2 26 266-291 216-241 (512)
365 cd01124 KaiC KaiC is a circadi 94.7 0.027 5.8E-07 51.0 3.2 33 268-300 1-35 (187)
366 PRK14723 flhF flagellar biosyn 94.6 0.15 3.2E-06 56.5 9.2 39 266-304 185-227 (767)
367 PRK10463 hydrogenase nickel in 94.6 0.042 9.1E-07 54.0 4.5 36 264-299 102-138 (290)
368 COG0324 MiaA tRNA delta(2)-iso 94.6 0.032 7E-07 55.1 3.7 35 266-303 3-37 (308)
369 PF00005 ABC_tran: ABC transpo 94.6 0.023 4.9E-07 48.8 2.4 34 266-299 11-45 (137)
370 TIGR00101 ureG urease accessor 94.6 0.043 9.4E-07 51.0 4.4 25 267-291 2-26 (199)
371 PRK14957 DNA polymerase III su 94.6 0.25 5.4E-06 52.9 10.6 27 265-291 37-63 (546)
372 TIGR02397 dnaX_nterm DNA polym 94.6 0.61 1.3E-05 46.8 13.0 26 266-291 36-61 (355)
373 TIGR00176 mobB molybdopterin-g 94.5 0.022 4.8E-07 50.8 2.2 24 268-291 1-24 (155)
374 TIGR01420 pilT_fam pilus retra 94.5 0.31 6.6E-06 49.3 10.7 26 266-291 122-147 (343)
375 PRK14952 DNA polymerase III su 94.5 0.74 1.6E-05 49.8 14.1 27 265-291 34-60 (584)
376 KOG1533 Predicted GTPase [Gene 94.5 0.02 4.3E-07 54.0 1.9 32 269-301 5-39 (290)
377 TIGR01650 PD_CobS cobaltochela 94.5 0.034 7.3E-07 55.5 3.6 32 268-300 66-97 (327)
378 PRK08533 flagellar accessory p 94.5 0.038 8.2E-07 52.6 3.8 36 266-301 24-61 (230)
379 PRK14729 miaA tRNA delta(2)-is 94.4 0.037 8.1E-07 54.7 3.8 34 266-303 4-37 (300)
380 PF01926 MMR_HSR1: 50S ribosom 94.4 0.031 6.7E-07 46.7 2.7 21 269-289 2-22 (116)
381 PRK06835 DNA replication prote 94.4 0.48 1E-05 47.6 11.7 41 267-307 184-226 (329)
382 TIGR03345 VI_ClpV1 type VI sec 94.4 0.46 9.9E-06 53.8 12.8 22 269-290 211-232 (852)
383 TIGR00390 hslU ATP-dependent p 94.4 0.03 6.4E-07 57.7 3.0 32 266-298 47-78 (441)
384 PRK05201 hslU ATP-dependent pr 94.3 0.037 7.9E-07 57.0 3.6 34 266-300 50-83 (443)
385 COG0466 Lon ATP-dependent Lon 94.3 0.067 1.5E-06 57.9 5.6 43 264-307 348-390 (782)
386 PRK15455 PrkA family serine pr 94.3 0.031 6.7E-07 59.6 3.0 26 266-291 103-128 (644)
387 PRK14490 putative bifunctional 94.3 0.039 8.5E-07 56.3 3.7 29 265-293 4-32 (369)
388 PRK05896 DNA polymerase III su 94.3 0.65 1.4E-05 50.2 12.9 26 266-291 38-63 (605)
389 COG5192 BMS1 GTP-binding prote 94.3 0.093 2E-06 55.1 6.3 26 266-291 69-94 (1077)
390 PRK13768 GTPase; Provisional 94.3 0.04 8.6E-07 53.2 3.5 36 266-301 2-39 (253)
391 PF13555 AAA_29: P-loop contai 94.3 0.043 9.4E-07 41.1 2.9 22 267-288 24-45 (62)
392 PF03215 Rad17: Rad17 cell cyc 94.2 0.043 9.4E-07 58.4 3.9 27 265-291 44-70 (519)
393 CHL00176 ftsH cell division pr 94.2 0.13 2.9E-06 56.1 7.7 37 266-303 216-252 (638)
394 TIGR03797 NHPM_micro_ABC2 NHPM 94.2 0.098 2.1E-06 57.8 6.8 111 266-378 479-613 (686)
395 PRK05636 replicative DNA helic 94.2 0.46 1E-05 50.5 11.6 25 264-288 263-287 (505)
396 COG0630 VirB11 Type IV secreto 94.2 0.12 2.6E-06 51.6 6.7 118 266-390 143-263 (312)
397 TIGR02237 recomb_radB DNA repa 94.2 0.045 9.7E-07 50.8 3.5 37 265-301 11-49 (209)
398 cd04137 RheB Rheb (Ras Homolog 94.2 0.034 7.4E-07 49.9 2.6 21 269-289 4-24 (180)
399 PRK06305 DNA polymerase III su 94.1 0.45 9.8E-06 49.9 11.3 26 266-291 39-64 (451)
400 cd01394 radB RadB. The archaea 94.1 0.046 1E-06 51.1 3.5 37 265-301 18-56 (218)
401 cd00154 Rab Rab family. Rab G 94.1 0.038 8.1E-07 47.6 2.7 21 269-289 3-23 (159)
402 PRK14960 DNA polymerase III su 94.1 0.62 1.4E-05 50.8 12.3 27 265-291 36-62 (702)
403 cd03114 ArgK-like The function 94.1 0.044 9.6E-07 48.4 3.1 34 268-301 1-36 (148)
404 KOG0054 Multidrug resistance-a 94.1 0.21 4.5E-06 58.5 9.3 112 264-379 545-669 (1381)
405 PF10662 PduV-EutP: Ethanolami 94.0 0.039 8.5E-07 48.5 2.7 23 267-289 2-24 (143)
406 TIGR03878 thermo_KaiC_2 KaiC d 94.0 0.058 1.3E-06 52.2 4.1 37 265-301 35-73 (259)
407 PF07726 AAA_3: ATPase family 94.0 0.039 8.4E-07 47.6 2.5 24 269-292 2-25 (131)
408 PRK14958 DNA polymerase III su 94.0 0.68 1.5E-05 49.4 12.4 27 265-291 37-63 (509)
409 cd02034 CooC The accessory pro 94.0 0.047 1E-06 46.2 3.0 33 269-301 2-36 (116)
410 COG4618 ArpD ABC-type protease 93.9 0.35 7.7E-06 50.6 9.7 110 266-377 362-496 (580)
411 PRK08691 DNA polymerase III su 93.9 0.38 8.2E-06 52.7 10.5 28 264-291 36-63 (709)
412 PRK05342 clpX ATP-dependent pr 93.9 0.046 1E-06 56.6 3.4 32 267-299 109-140 (412)
413 TIGR03877 thermo_KaiC_1 KaiC d 93.9 0.055 1.2E-06 51.6 3.7 37 265-301 20-58 (237)
414 PHA02624 large T antigen; Prov 93.9 0.07 1.5E-06 57.2 4.8 35 264-299 429-463 (647)
415 PRK07994 DNA polymerase III su 93.9 0.54 1.2E-05 51.3 11.6 27 265-291 37-63 (647)
416 TIGR00231 small_GTP small GTP- 93.9 0.042 9.1E-07 46.9 2.6 22 269-290 4-25 (161)
417 PRK05973 replicative DNA helic 93.9 0.057 1.2E-06 51.6 3.7 44 265-308 63-112 (237)
418 CHL00095 clpC Clp protease ATP 93.9 0.24 5.1E-06 56.0 9.2 23 268-290 202-224 (821)
419 PRK08939 primosomal protein Dn 93.9 0.51 1.1E-05 46.9 10.6 104 266-388 156-270 (306)
420 PRK14959 DNA polymerase III su 93.9 1.1 2.5E-05 48.6 13.9 26 266-291 38-63 (624)
421 smart00173 RAS Ras subfamily o 93.9 0.044 9.5E-07 48.2 2.7 21 269-289 3-23 (164)
422 cd04138 H_N_K_Ras_like H-Ras/N 93.9 0.046 9.9E-07 47.6 2.8 22 269-290 4-25 (162)
423 PRK12726 flagellar biosynthesi 93.9 0.049 1.1E-06 55.5 3.3 40 264-303 204-245 (407)
424 TIGR00678 holB DNA polymerase 93.8 1.3 2.8E-05 40.4 12.5 25 266-290 14-38 (188)
425 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.8 0.049 1.1E-06 50.9 3.1 26 266-291 30-55 (218)
426 TIGR03796 NHPM_micro_ABC1 NHPM 93.8 0.21 4.5E-06 55.4 8.5 110 266-377 505-639 (710)
427 PF00931 NB-ARC: NB-ARC domain 93.8 0.053 1.1E-06 52.7 3.3 26 264-289 17-42 (287)
428 PRK04296 thymidine kinase; Pro 93.7 0.054 1.2E-06 49.9 3.2 34 266-299 2-37 (190)
429 cd00876 Ras Ras family. The R 93.7 0.047 1E-06 47.5 2.6 21 269-289 2-22 (160)
430 PRK14493 putative bifunctional 93.7 0.046 9.9E-07 53.5 2.8 26 266-291 1-26 (274)
431 smart00175 RAB Rab subfamily o 93.7 0.046 1E-06 47.9 2.6 21 269-289 3-23 (164)
432 PRK09111 DNA polymerase III su 93.7 0.73 1.6E-05 50.1 12.1 28 264-291 44-71 (598)
433 PRK08760 replicative DNA helic 93.7 0.56 1.2E-05 49.6 11.0 37 265-301 228-267 (476)
434 COG3172 NadR Predicted ATPase/ 93.7 0.32 7E-06 43.5 7.6 28 265-292 7-34 (187)
435 COG0396 sufC Cysteine desulfur 93.7 0.054 1.2E-06 51.1 3.0 25 265-289 29-53 (251)
436 cd03292 ABC_FtsE_transporter F 93.7 0.055 1.2E-06 50.4 3.1 26 266-291 27-52 (214)
437 COG0464 SpoVK ATPases of the A 93.7 0.19 4.1E-06 53.2 7.6 34 264-298 274-307 (494)
438 PRK13541 cytochrome c biogenes 93.6 0.057 1.2E-06 49.7 3.2 26 266-291 26-51 (195)
439 TIGR03600 phage_DnaB phage rep 93.6 0.63 1.4E-05 48.3 11.2 36 265-300 193-231 (421)
440 cd04139 RalA_RalB RalA/RalB su 93.6 0.05 1.1E-06 47.5 2.7 21 269-289 3-23 (164)
441 cd03283 ABC_MutS-like MutS-lik 93.6 0.053 1.2E-06 50.4 2.9 23 266-288 25-47 (199)
442 cd03225 ABC_cobalt_CbiO_domain 93.6 0.059 1.3E-06 50.1 3.2 27 265-291 26-52 (211)
443 COG5324 Uncharacterized conser 93.6 0.74 1.6E-05 47.8 11.1 145 262-432 370-529 (758)
444 TIGR00665 DnaB replicative DNA 93.6 0.92 2E-05 47.2 12.4 37 265-301 194-233 (434)
445 cd03269 ABC_putative_ATPase Th 93.6 0.059 1.3E-06 50.1 3.2 26 266-291 26-51 (210)
446 cd01983 Fer4_NifH The Fer4_Nif 93.6 0.042 9E-07 43.4 1.9 24 268-291 1-24 (99)
447 cd03263 ABC_subfamily_A The AB 93.6 0.059 1.3E-06 50.4 3.2 25 266-290 28-52 (220)
448 TIGR00960 3a0501s02 Type II (G 93.6 0.057 1.2E-06 50.4 3.1 26 266-291 29-54 (216)
449 TIGR01166 cbiO cobalt transpor 93.5 0.06 1.3E-06 49.2 3.1 26 266-291 18-43 (190)
450 cd01862 Rab7 Rab7 subfamily. 93.5 0.052 1.1E-06 48.0 2.6 21 269-289 3-23 (172)
451 TIGR00958 3a01208 Conjugate Tr 93.5 0.13 2.9E-06 57.0 6.3 110 266-377 507-641 (711)
452 TIGR02673 FtsE cell division A 93.5 0.06 1.3E-06 50.2 3.1 25 266-290 28-52 (214)
453 cd03259 ABC_Carb_Solutes_like 93.5 0.062 1.3E-06 50.1 3.2 27 265-291 25-51 (213)
454 cd04136 Rap_like Rap-like subf 93.5 0.055 1.2E-06 47.4 2.7 21 269-289 4-24 (163)
455 cd03258 ABC_MetN_methionine_tr 93.5 0.061 1.3E-06 50.8 3.1 26 266-291 31-56 (233)
456 TIGR02315 ABC_phnC phosphonate 93.5 0.06 1.3E-06 51.2 3.1 26 266-291 28-53 (243)
457 cd03224 ABC_TM1139_LivF_branch 93.5 0.064 1.4E-06 50.2 3.2 26 266-291 26-51 (222)
458 PRK05703 flhF flagellar biosyn 93.5 0.059 1.3E-06 56.0 3.2 38 266-303 221-262 (424)
459 COG4608 AppF ABC-type oligopep 93.5 0.3 6.5E-06 47.2 7.8 103 265-377 38-166 (268)
460 cd03261 ABC_Org_Solvent_Resist 93.4 0.062 1.3E-06 50.9 3.1 26 266-291 26-51 (235)
461 PRK00080 ruvB Holliday junctio 93.4 0.053 1.1E-06 54.3 2.8 26 266-291 51-76 (328)
462 cd03219 ABC_Mj1267_LivG_branch 93.4 0.06 1.3E-06 51.0 3.0 26 266-291 26-51 (236)
463 cd04119 RJL RJL (RabJ-Like) su 93.4 0.058 1.2E-06 47.3 2.7 21 269-289 3-23 (168)
464 PRK09361 radB DNA repair and r 93.4 0.073 1.6E-06 50.1 3.5 37 265-301 22-60 (225)
465 cd03301 ABC_MalK_N The N-termi 93.4 0.066 1.4E-06 49.8 3.2 26 266-291 26-51 (213)
466 cd03235 ABC_Metallic_Cations A 93.4 0.06 1.3E-06 50.1 2.9 35 265-299 24-59 (213)
467 PF08298 AAA_PrkA: PrkA AAA do 93.4 0.068 1.5E-06 53.7 3.3 27 265-291 87-113 (358)
468 PRK15177 Vi polysaccharide exp 93.4 0.064 1.4E-06 50.3 3.0 25 266-290 13-37 (213)
469 TIGR03881 KaiC_arch_4 KaiC dom 93.3 0.093 2E-06 49.5 4.1 36 265-300 19-56 (229)
470 cd03234 ABCG_White The White s 93.3 0.07 1.5E-06 50.3 3.3 26 266-291 33-58 (226)
471 cd04177 RSR1 RSR1 subgroup. R 93.3 0.06 1.3E-06 47.9 2.7 21 269-289 4-24 (168)
472 PRK10733 hflB ATP-dependent me 93.3 0.27 5.9E-06 53.9 8.2 36 268-304 187-222 (644)
473 PF03308 ArgK: ArgK protein; 93.3 0.063 1.4E-06 51.7 2.9 37 265-301 28-66 (266)
474 COG2805 PilT Tfp pilus assembl 93.3 0.21 4.5E-06 49.1 6.4 84 266-355 125-209 (353)
475 PF03796 DnaB_C: DnaB-like hel 93.3 0.22 4.8E-06 47.9 6.8 104 266-378 19-137 (259)
476 cd03297 ABC_ModC_molybdenum_tr 93.3 0.071 1.5E-06 49.7 3.2 27 264-291 22-48 (214)
477 TIGR03375 type_I_sec_LssB type 93.3 0.5 1.1E-05 52.3 10.4 108 266-377 491-625 (694)
478 cd00157 Rho Rho (Ras homology) 93.3 0.062 1.3E-06 47.5 2.7 21 269-289 3-23 (171)
479 cd03226 ABC_cobalt_CbiO_domain 93.3 0.068 1.5E-06 49.5 3.0 26 266-291 26-51 (205)
480 cd03262 ABC_HisP_GlnQ_permease 93.3 0.07 1.5E-06 49.6 3.1 26 266-291 26-51 (213)
481 TIGR03410 urea_trans_UrtE urea 93.3 0.067 1.5E-06 50.5 3.1 26 266-291 26-51 (230)
482 TIGR03608 L_ocin_972_ABC putat 93.3 0.07 1.5E-06 49.3 3.1 26 266-291 24-49 (206)
483 TIGR02211 LolD_lipo_ex lipopro 93.2 0.071 1.5E-06 49.9 3.2 26 266-291 31-56 (221)
484 PLN03130 ABC transporter C fam 93.2 0.22 4.7E-06 60.3 7.9 27 265-291 642-668 (1622)
485 cd01123 Rad51_DMC1_radA Rad51_ 93.2 0.073 1.6E-06 50.3 3.2 25 265-289 18-42 (235)
486 cd04156 ARLTS1 ARLTS1 subfamil 93.2 0.06 1.3E-06 47.1 2.5 21 269-289 2-22 (160)
487 PRK13851 type IV secretion sys 93.2 0.06 1.3E-06 54.4 2.8 139 266-411 162-307 (344)
488 cd03223 ABCD_peroxisomal_ALDP 93.2 0.075 1.6E-06 47.7 3.1 109 266-379 27-146 (166)
489 TIGR00382 clpX endopeptidase C 93.2 0.064 1.4E-06 55.4 3.0 25 267-291 117-141 (413)
490 cd03293 ABC_NrtD_SsuB_transpor 93.2 0.069 1.5E-06 50.1 3.0 25 266-290 30-54 (220)
491 cd04155 Arl3 Arl3 subfamily. 93.2 0.062 1.3E-06 47.8 2.5 23 267-289 15-37 (173)
492 cd03256 ABC_PhnC_transporter A 93.2 0.071 1.5E-06 50.6 3.1 25 266-290 27-51 (241)
493 PRK09165 replicative DNA helic 93.2 0.88 1.9E-05 48.4 11.6 24 265-288 216-239 (497)
494 PRK08506 replicative DNA helic 93.1 1 2.2E-05 47.5 12.0 37 265-301 191-229 (472)
495 PRK06851 hypothetical protein; 93.1 0.059 1.3E-06 54.8 2.6 26 266-291 30-55 (367)
496 PRK14954 DNA polymerase III su 93.1 0.67 1.4E-05 50.5 10.8 27 265-291 37-63 (620)
497 PRK10584 putative ABC transpor 93.1 0.075 1.6E-06 50.1 3.2 26 266-291 36-61 (228)
498 PRK13538 cytochrome c biogenes 93.1 0.076 1.7E-06 49.2 3.2 27 265-291 26-52 (204)
499 PRK11629 lolD lipoprotein tran 93.1 0.075 1.6E-06 50.3 3.2 26 266-291 35-60 (233)
500 PF13086 AAA_11: AAA domain; P 93.1 0.071 1.5E-06 49.5 2.9 23 268-290 19-41 (236)
No 1
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=1.9e-36 Score=296.37 Aligned_cols=174 Identities=34% Similarity=0.583 Sum_probs=157.8
Q ss_pred CeEEeCcCCCCCCeEEcCCCceEeecCCCCcccceeeEeecceee-CCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEe
Q 013831 42 QRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGIN-GGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS 120 (435)
Q Consensus 42 ~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~-~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s 120 (435)
..|+||++|++..+.|++|||.|++.. -+.|-+||||.|+. .|||||||+|.+ .|.||||||
T Consensus 87 ~~w~mn~~Drg~alaI~~dGL~CqSre----~KeWhGcRaT~Gl~gkGK~YyEvtitd-------------~GLCRVGWs 149 (725)
T KOG0349|consen 87 REWKMNKQDRGLALAIDEDGLACQSRE----KKEWHGCRATAGLYGKGKYYYEVTITD-------------KGLCRVGWS 149 (725)
T ss_pred cccccCccccCceeeEcCCccccchhH----HhhhhccccccccccCceEEEEEEecc-------------Cceeeechh
Confidence 449999999999999999999998754 58899999999999 899999999985 599999999
Q ss_pred cCCCCCCCCCCCCcceEEecCCceEeCCCcccCCCCCCCCCEEEEEEecCCCCceeEEEEeCccceeecccccCCCCCcc
Q 013831 121 RGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLG 200 (435)
Q Consensus 121 ~~~~~~~~lG~d~~S~gy~~~G~~~~~~~~~~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~lg~af~~~~~~~~l~ 200 (435)
|.++ +.-+|.+..+|||+++|++.+|.++.+||++|+..|||||+||+++ .+|.|+|||+.||.||++++.++
T Consensus 150 T~qa-sLdlGt~~~gFGfGGTGkKS~nkqFDdYGe~Ft~~DvIGCyLDld~---~~v~fsKNG~~lg~AF~ip~~~k--- 222 (725)
T KOG0349|consen 150 TLQA-SLDLGTGLDGFGFGGTGKKSTNKQFDDYGEPFTLNDVIGCYLDLDS---RTVWFSKNGEQLGAAFSIPVKYK--- 222 (725)
T ss_pred hccc-ccccCccccccccCccCccccccccccccCcccccceeeEEEeccC---ceEEEecCccccceeEEcChhhc---
Confidence 9763 6789999999999999999999999999999999999999999999 89999999999999999876543
Q ss_pred ccccccccccCCCceeeEEEEcCeEEEEEccCCC-CCCCccccchhhhhcc
Q 013831 201 VVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQ-GLIPVEGYKSWVSALD 250 (435)
Q Consensus 201 ~~~~~~~g~~~~~~lfP~v~l~~~~v~~nFG~~~-~~~p~~g~~p~~~~~~ 250 (435)
+..|||||.++|+++.+|||.++ +|||-+||....+|.+
T Consensus 223 -----------n~~lfPAvvlkNael~fNFG~~~FKfpPgngFva~s~Ap~ 262 (725)
T KOG0349|consen 223 -----------NSNLFPAVVLKNAELSFNFGSQPFKFPPGNGFVAVSDAPN 262 (725)
T ss_pred -----------ccccchheeeccceEEEecCCCccccCCCCceEEeecCCc
Confidence 67899999999999999999976 6777789988776553
No 2
>KOG2626 consensus Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2 [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=4.1e-30 Score=258.07 Aligned_cols=166 Identities=25% Similarity=0.320 Sum_probs=146.9
Q ss_pred CeEEeCcCCCCCCeEEcCCCceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEec
Q 013831 42 QRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSR 121 (435)
Q Consensus 42 ~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s~ 121 (435)
..|.|++.|++.+|.||+|.|+++. .+++++|||+|||.+|.|||||+|++. .++.++|+||++
T Consensus 291 ~tv~l~~hdrA~ql~Is~drlt~tg------eKGy~MvRAshgv~~G~WYFEI~vd~~----------pd~~a~RlGwsq 354 (544)
T KOG2626|consen 291 DTVNLSWHDRAEQLKISEDRLTATG------EKGYRMVRASHGVLEGAWYFEIKVDEM----------PDDAAIRLGWSQ 354 (544)
T ss_pred hhhhhhhhcccccccccccceeeec------ccceeeeeecccccccceeEEEEeecC----------CCccceeeeccc
Confidence 4799999999999999999999987 589999999999999999999999874 157899999999
Q ss_pred CCCC-CCCCCCCCcceEEe-cCCceEeCCCcccCCCCCCCCCEEEEEEecCC----------------------------
Q 013831 122 GDDP-VGKLGETEQSFGFG-GTGKFSHGGNFLNFGEKFGVGDTIICAIDLES---------------------------- 171 (435)
Q Consensus 122 ~~~~-~~~lG~d~~S~gy~-~~G~~~~~~~~~~yg~~f~~gDvIGc~ld~~~---------------------------- 171 (435)
.... ..+||.|++||||+ ..|.++|.+....|-..|+.||||||+|+++.
T Consensus 355 ~~g~LqApvGYdkfsY~wRdk~GtKfh~s~gk~Y~~gf~qGDvLGf~I~LP~~~~~~~~lp~~~kdk~lI~yK~~lyfe~ 434 (544)
T KOG2626|consen 355 LYGNLQAPVGYDKFSYGWRDKKGTKFHESLGKHYSDGFGQGDVLGFYINLPKDLSPEKYLPLTHKDKFLIKYKGHLYFED 434 (544)
T ss_pred cccccccccccccccccccccCCcchhhhhhhhhhhhccCCceEEEEEecCCcccccccCCccccccceeeeeeeeEEEc
Confidence 7754 78999999999996 57999999999999999999999999999986
Q ss_pred -------------CCceeEEEEeCccceeecccccCCCCCccccccccccccCCCceeeEEEEc-CeEEEEEccCCCCCC
Q 013831 172 -------------KPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVEQGLI 237 (435)
Q Consensus 172 -------------~p~~~i~ft~NG~~lg~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~-~~~v~~nFG~~~~~~ 237 (435)
.|...|.|+|||+.+|+||+. .. ..+.|||+||+. .|.+.+|||+.+.++
T Consensus 435 ~d~v~k~~k~l~~~pgS~I~f~KNG~~qG~Ay~n---i~-------------~~G~YyPaIS~yks~tv~~nfGP~F~~~ 498 (544)
T KOG2626|consen 435 PDNVAKIEKTLKIKPGSEIEFFKNGVSQGVAYEN---IY-------------KAGAYYPAISIYKSCTVKFNFGPQFRYP 498 (544)
T ss_pred cchhhhhhhccccCCCceEEEeecccchhhhhhh---hh-------------ccccccceeeecccceEEEeccccccCC
Confidence 134678999999999999972 10 136899999998 899999999999887
Q ss_pred Cc
Q 013831 238 PV 239 (435)
Q Consensus 238 p~ 239 (435)
|-
T Consensus 499 p~ 500 (544)
T KOG2626|consen 499 PC 500 (544)
T ss_pred cc
Confidence 63
No 3
>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin []. Ca2+-release from the sarcoplasmic or endoplasmic reticulum, the intracellular Ca2+ store, is mediated by the ryanodine receptor (RyR) and/or the inositol trisphosphate receptor (IP3R).; GO: 0005515 protein binding; PDB: 2V24_A 3EK9_A 2AFJ_A 2IWG_E 3EMW_A 2WL1_A 3TOJ_B 2VOK_A 2VOL_B 2FNJ_A ....
Probab=99.86 E-value=5.3e-21 Score=163.51 Aligned_cols=116 Identities=29% Similarity=0.469 Sum_probs=98.2
Q ss_pred CCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCC----CCCCCCCCCcceEEecCC-ceEeCCCcccCCCCCCC-C
Q 013831 87 GGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDD----PVGKLGETEQSFGFGGTG-KFSHGGNFLNFGEKFGV-G 160 (435)
Q Consensus 87 ~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s~~~~----~~~~lG~d~~S~gy~~~G-~~~~~~~~~~yg~~f~~-g 160 (435)
+|+|||||+|... ..++|||++... ....+|++..||+|+..+ .++++.....++.+++. |
T Consensus 1 sG~~YwEV~v~~~-------------~~~~iGv~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (124)
T PF00622_consen 1 SGKHYWEVEVDSG-------------GSISIGVATSSASVSGDENLSGYDPFSWGFHGDGGKKYHGGTSEETGSPFQEPG 67 (124)
T ss_dssp SSEEEEEEEETGG-------------CTEEEEEEETTSEESSSTS-TTSSTTEEEEETTTTTEEESTSSSECSCTSSTTT
T ss_pred CcCEEEEEEEecC-------------cCEEEEEeECccccCCccccCCccccceeeeccccccceeecccccccccccCC
Confidence 5999999999864 339999999775 256889999999999877 88899888999999998 9
Q ss_pred CEEEEEEecCCCCceeEEEEeCcccee-ecccccCCCCCccccccccccccCCCceeeEEEEc-CeEEEEEccCCC
Q 013831 161 DTIICAIDLESKPLATIGFAKNGKWLG-TAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVEQ 234 (435)
Q Consensus 161 DvIGc~ld~~~~p~~~i~ft~NG~~lg-~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~-~~~v~~nFG~~~ 234 (435)
|||||+||++. ++|+|++||+.++ .+|+. .+ ...+|||+|++. ++.+.+|||++|
T Consensus 68 dvIG~~lD~~~---g~l~F~~ng~~~~~~~f~~-~~---------------~~~~l~P~v~~~~~~~~~~n~g~~~ 124 (124)
T PF00622_consen 68 DVIGCGLDLDN---GELSFYKNGKFLGIYAFTD-ID---------------FSEPLYPAVSLGGGQSVELNFGQRP 124 (124)
T ss_dssp SEEEEEEETTT---TEEEEEETTEEEEEEEEES-CT---------------TSSSBEEEEEEESTSEEEEEEEC--
T ss_pred cEEEEEEeecc---cEEEEEECCccceeEEEEC-CC---------------CCCcEEEEEEecCCCEEEEEeCCCC
Confidence 99999999998 8999999999999 77751 11 146999999999 899999999975
No 4
>smart00449 SPRY Domain in SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues.
Probab=99.86 E-value=9e-21 Score=162.06 Aligned_cols=114 Identities=33% Similarity=0.528 Sum_probs=97.2
Q ss_pred CCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCCC---CCCCCCCCcceEEecCC-ceEeCCCcccCCCCCCC-CC
Q 013831 87 GGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDP---VGKLGETEQSFGFGGTG-KFSHGGNFLNFGEKFGV-GD 161 (435)
Q Consensus 87 ~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s~~~~~---~~~lG~d~~S~gy~~~G-~~~~~~~~~~yg~~f~~-gD 161 (435)
+|+|||||+|.+ .+.++|||++...+ ...+|++.+||+|+.++ .++++.....|+.++.. ||
T Consensus 1 sG~~YwEV~v~~-------------~~~~~vGv~~~~~~r~~~~~~G~~~~sw~~~~~~g~~~~~~~~~~~~~~~~~~gd 67 (122)
T smart00449 1 SGRHYFEVEIFD-------------GGHWRVGVATKSVPRGYFALLGEDKGSWGYDGDGGKKYHNSTGPEYGLPLQEPGD 67 (122)
T ss_pred CCcEEEEEEEcC-------------CCeEEEEEEcCccCCCccccCCCCCCEEEEEcCCCcEEeCCCCCccCccccCCCC
Confidence 589999999984 47899999997654 56899999999998765 78888777789999997 99
Q ss_pred EEEEEEecCCCCceeEEEEeCccce-eecccccCCCCCccccccccccccCCCceeeEEEEc-CeEEEEEccC
Q 013831 162 TIICAIDLESKPLATIGFAKNGKWL-GTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSV 232 (435)
Q Consensus 162 vIGc~ld~~~~p~~~i~ft~NG~~l-g~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~-~~~v~~nFG~ 232 (435)
+|||+||++. ++|+|++||+.+ +.+|.. .. ...++||++++. ...+.+|||+
T Consensus 68 ~iGv~lD~~~---g~l~F~~ng~~~~~~~f~~-~~---------------~~~~l~P~~~~~~~~~~~~n~g~ 121 (122)
T smart00449 68 VIGCFLDLEA---GTISFYKNGKYLHGLAFFD-VK---------------FSGPLYPAVSLGSGCSVRLNFGP 121 (122)
T ss_pred EEEEEEECCC---CEEEEEECCCEeeeEEEec-cC---------------CCCcEeeEEEcCCCCEEEEEecC
Confidence 9999999998 899999999999 788851 11 246999999998 4589999997
No 5
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.85 E-value=3.5e-20 Score=162.40 Aligned_cols=139 Identities=27% Similarity=0.420 Sum_probs=102.1
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF 347 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~v 347 (435)
||+|+|+|||||||||+.|++.++ +.+|+.|.++..+..........+.. ..+.+.+.+...+..+++.|.++
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~---~~~i~~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~g~~~ 73 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG---AVVISQDEIRRRLAGEDPPSPSDYIE----AEERAYQILNAAIRKALRNGNSV 73 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST---EEEEEHHHHHHHHCCSSSGCCCCCHH----HHHHHHHHHHHHHHHHHHTT-EE
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC---CEEEeHHHHHHHHcccccccchhHHH----HHHHHHHHHHHHHHHHHHcCCCc
Confidence 799999999999999999999987 78999999988764211111111122 22233334455666777999999
Q ss_pred EEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCC--CCcHHHHHHHHhcccCC
Q 013831 348 IIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGK--EVPADAVNNMLANYVLP 413 (435)
Q Consensus 348 IlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~--~vp~~vi~~m~~~fe~P 413 (435)
|||+||+.++.|..+.+.+..++ .+.+|+|.++ +++.+|+..|....++ .++.+++.+|++.||+|
T Consensus 74 vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~p 143 (143)
T PF13671_consen 74 VVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGDKRFEVPEEVFDRMLARFEPP 143 (143)
T ss_dssp EEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCTTS----HHHHHHHHHHHH--
T ss_pred eeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCcccccccCcHHHHHHHHHhhccC
Confidence 99999999999998888877777 7888999987 8999999999765432 48999999999999987
No 6
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.82 E-value=3.6e-19 Score=186.15 Aligned_cols=137 Identities=20% Similarity=0.223 Sum_probs=112.8
Q ss_pred CCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (435)
Q Consensus 263 ~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~ 342 (435)
...++||+|+|+|||||||||++++...+ +++||.|.+- .|+.+.. .++.+++
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g---~~~vn~D~lg----------------~~~~~~~--------~a~~~L~ 418 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAG---YKHVNADTLG----------------STQNCLT--------ACERALD 418 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcC---CeEECcHHHH----------------HHHHHHH--------HHHHHHh
Confidence 35689999999999999999999998865 8899998641 1222222 3456679
Q ss_pred CCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcC--CCCcHHHHHHHHhcccCCCCCCC
Q 013831 343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMG--KEVPADAVNNMLANYVLPVNKDT 418 (435)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~--~~vp~~vi~~m~~~fe~P~~~~~ 418 (435)
+|++||||+||++++.|++++++++.++ .+.+++|++| ++|++||..|..... ..+|++++..|.++|++|+.
T Consensus 419 ~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~~~~s~~~vp~~v~~~~~k~fE~Pt~--- 495 (526)
T TIGR01663 419 QGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFRELSDSAHIKIKDMVFNGMKKKFEAPAL--- 495 (526)
T ss_pred CCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhccCCcccCCCCHHHHHHHHhhCCCCCc---
Confidence 9999999999999999999888888876 7888999998 899999999965322 35789999999999999986
Q ss_pred CCCCcccceecccc
Q 013831 419 PGSDELFDQRRGSA 432 (435)
Q Consensus 419 ~~~~e~Fd~i~~~~ 432 (435)
.|||+.|..+-
T Consensus 496 ---~EGF~~I~~v~ 506 (526)
T TIGR01663 496 ---AEGFIAIHEIN 506 (526)
T ss_pred ---ccCceEEEEEe
Confidence 99999997653
No 7
>KOG2242 consensus Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain [RNA processing and modification]
Probab=99.80 E-value=7.9e-22 Score=206.55 Aligned_cols=368 Identities=33% Similarity=0.469 Sum_probs=277.9
Q ss_pred CCCCCCCCCCCeEEeCcCCCCCCeEEcCCCceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCC
Q 013831 32 SSASGPRSQKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQ 111 (435)
Q Consensus 32 ~~~~~~~~~~~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~ 111 (435)
..-..+++ +..++.|..+|+.+ ....+..+....+.+.+...|.+.|+.++...+...||-++.+.....+......+
T Consensus 27 ~~~~~~~~-~~~~~~d~~~c~~~-~~~~~~~~~~~~~~e~~~~~~~~~r~a~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 104 (558)
T KOG2242|consen 27 AEEDEWHF-DTIVCIDTYNCDLH-KYRRDRSSGYALTKERFAGPWDGARAAYSVSRGEVCFEMRINEPEEVPHFQPLEPD 104 (558)
T ss_pred cccccccc-ceeeechhhhhhhh-hcccccccccccchhhccccCcccceeeeecCCcchhhcccccccccCCCCccccc
Confidence 34455677 88899999999999 88888877777777778889999999999999988888888766544433333455
Q ss_pred CCcEEEEEecCCCCCCCCCCCCcceEEecCCceEeCCCcccCCCCCCCCCEEEEEEecCCCCceeEEEEeCccceeeccc
Q 013831 112 QHVCRVGTSRGDDPVGKLGETEQSFGFGGTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQ 191 (435)
Q Consensus 112 ~~~~rvG~s~~~~~~~~lG~d~~S~gy~~~G~~~~~~~~~~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~lg~af~ 191 (435)
....+++|+.... -..++++..+|+|...+.+.++.....|++.|...|+|||.+++.......+.|.+||+.++.+|-
T Consensus 105 ~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~f~e~~~i~c~~~~~~~d~~~l~~~k~~~~~~~~~~ 183 (558)
T KOG2242|consen 105 PHDVRIGWSLDSI-RTLLGDEPFSYGYSETGKKSCNSEVEKYGEKFPENDVIGCFADFEILDEVELSYEKNGQDLGESFL 183 (558)
T ss_pred cccccccccchhh-hhccccccccccccccccchhhHHHHHHHhhcccccccchhhcccccccCcchhhhccchhhhhhc
Confidence 6788999997542 457899999999999999999999999999999999999999987533357899999999999996
Q ss_pred ccCCCCCccccccccccccCCCceeeEEEEcCeEEEEEccCCC-CCCCccccchhhhhccCCCcccccccC-CCCcceEE
Q 013831 192 FDAGSNGLGVVDSAVKERQCESAVFPHILLKNVVVVMQFSVEQ-GLIPVEGYKSWVSALDDGNSVLGPTFC-NMKDCEVM 269 (435)
Q Consensus 192 ~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~~~~v~~nFG~~~-~~~p~~g~~p~~~~~~~~~~~~~p~~~-~~~~~~li 269 (435)
++... .....++|++.-+++.|..|||+.. .+.+..-...+..++.....+..|.++ ...+|.++
T Consensus 184 l~~~~-------------~~~~~~~p~vl~~~~~ve~~f~~~~ag~~~v~~~~~~i~~~~~~~~~~~~~~p~~~~~c~~~ 250 (558)
T KOG2242|consen 184 LSKED-------------LGGQALYPHVLRKNCAVEGNFGQKAAGYEPVKEEYTFIQNYPLEERLRGPVGPETKKECEVF 250 (558)
T ss_pred chhhh-------------ccCcccCcccccCcceeccccccccccccccchhhhhhhhcchhhcccCCCCccccccchhh
Confidence 54321 2355799999999999999999975 343333233345555544455566654 56789999
Q ss_pred EEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHH-HHhcCCCeEE
Q 013831 270 MMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLS-RASRTPRNFI 348 (435)
Q Consensus 270 im~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~-~al~~g~~vI 348 (435)
+|+|+||+||++|+-..+.+.+.+..-+.+.-.++..++..|......+...+...++++..|+..++. .++...++.|
T Consensus 251 ~~~g~~~~g~~~~~le~~~q~~~~~~~i~g~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~~~r~~~ 330 (558)
T KOG2242|consen 251 MMRGLPGAGKTSWALEPAAQNPEKGGNILGGNTIMPKMRVVGLEEQTNDAFSRGYLIQQAGQCLNKLPRDIFLRKKRNYI 330 (558)
T ss_pred hcccccccccchhhhhhhhhCccccCCccccccccCCcCcccchhhhhccccccchhhccccccccchhhhhhhhhhhhh
Confidence 999999999999999999887765434444444555554444321112222334455566666666665 6788999999
Q ss_pred EeCCCcCHHHHHHHHHHHhcCCcEEEEEECChHHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCC
Q 013831 349 IDQTNVFKSARKRKLRLFVNFRKIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN 415 (435)
Q Consensus 349 lD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~ 415 (435)
+|.+|++...+.+.+..+..+.++..+.+++.+.+..|...|......++++.++..|...+..|..
T Consensus 331 ~d~~~~s~~~~~r~~~~~~~~~~~~p~~~~~~~d~~s~~~v~~~~~~~d~~~~~~~e~~~~~~~~~~ 397 (558)
T KOG2242|consen 331 LDQTNLSSSAQRRKMGLFSQFSRKAPVVCPAFEDLKSRTIVRTEVEGKDVGETAVLEMNANFTLPGV 397 (558)
T ss_pred hhccccchhhceecccccccccccCCCcCCchhhhccccceEeeeecccCCcceEEEEeeeeccCch
Confidence 9999999998887777777777888889999999999998887666677877777777777776654
No 8
>COG4639 Predicted kinase [General function prediction only]
Probab=99.78 E-value=3.6e-18 Score=148.51 Aligned_cols=128 Identities=24% Similarity=0.319 Sum_probs=97.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhcc-CCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV-PGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP 344 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g 344 (435)
..|++|+|+|||||||||+++..... +|+.|+++..++. .+. ......|+.+.+ .+...++..+++|
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~~~~-----~lsld~~r~~lg~~~~~---e~sqk~~~~~~~----~l~~~l~qrl~~G 69 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFLQNY-----VLSLDDLRLLLGVSASK---ENSQKNDELVWD----ILYKQLEQRLRRG 69 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCCCcc-----eecHHHHHHHhhhchhh---hhccccHHHHHH----HHHHHHHHHHHcC
Confidence 46899999999999999999877643 6788998876642 221 111222222222 2223455567999
Q ss_pred CeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhc
Q 013831 345 RNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLAN 409 (435)
Q Consensus 345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~ 409 (435)
+..|||+||+.++.|++++.++..|+ ...+|+|++| ++|.+||+.| .+.||++||.+|...
T Consensus 70 k~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~----~Rqv~~~VI~r~~r~ 132 (168)
T COG4639 70 KFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR----ERQVPEEVIPRMLRE 132 (168)
T ss_pred CeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc----chhCCHHHHHHHHHH
Confidence 99999999999999999988888887 5556888888 9999999977 567999999999876
No 9
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.75 E-value=1.1e-17 Score=151.60 Aligned_cols=138 Identities=20% Similarity=0.287 Sum_probs=100.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCcc--EEEeccHHHHHHhccCCCccCCCChHHHHH-HHHHHHHHHHHHHHHHhc
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLGTNLILEQMKVPGLLRKHNYSERFQC-LMGRANAIFDVLLSRASR 342 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~--~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~-~~~~~~~~~~~ll~~al~ 342 (435)
+.+||+.|+|||||||+|+.|++.+..+. .++++.|..+-- +. +. +.+.|++ +.+.-.+...+++..|++
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i--~~----DE-slpi~ke~yres~~ks~~rlldSalk 73 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGI--LW----DE-SLPILKEVYRESFLKSVERLLDSALK 73 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhhe--ec----cc-ccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 35899999999999999999998775432 345555543211 11 11 1122222 222111222236666665
Q ss_pred CCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCC
Q 013831 343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN 415 (435)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~ 415 (435)
..-||+|+||++.++|+++....+++. ..++|++.+| +.|++||..| +...|++++++|+.+||.|..
T Consensus 74 -n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~er----gepip~Evl~qly~RfEePn~ 143 (261)
T COG4088 74 -NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRER----GEPIPEEVLRQLYDRFEEPNP 143 (261)
T ss_pred -ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccC----CCCCCHHHHHHHHHhhcCCCC
Confidence 889999999999999999887777766 8999999987 9999999777 788999999999999998865
No 10
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.75 E-value=1.6e-17 Score=161.06 Aligned_cols=138 Identities=22% Similarity=0.292 Sum_probs=90.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~ 343 (435)
+-||+|||+|||||||+|++|.+.+. +..+++++.|.+.-. .. .|.....+ +.++..++..+++++..
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~---~~---~y~~~~~E----k~~R~~l~s~v~r~ls~ 70 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGID---RN---DYADSKKE----KEARGSLKSAVERALSK 70 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-T---TS---SS--GGGH----HHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccc---hh---hhhchhhh----HHHHHHHHHHHHHhhcc
Confidence 35899999999999999999987643 234678886665411 11 11111212 23334566677888888
Q ss_pred CCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCC
Q 013831 344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN 415 (435)
Q Consensus 344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~ 415 (435)
...||+|++|+.+++|.+++++++.++ .+++|+|.++ +.|++||.+|.. ...+++++|.+|..+||.|..
T Consensus 71 ~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~--~~~~~~e~i~~m~~RfE~P~~ 142 (270)
T PF08433_consen 71 DTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPE--PERYPEETIDDMIQRFEEPDP 142 (270)
T ss_dssp -SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT---S--S-HHHHHHHHHH---TTS
T ss_pred CeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCC--CCCCCHHHHHHHHHHhcCCCC
Confidence 999999999999999999999988887 8899999998 999999999942 334999999999999999975
No 11
>KOG4030 consensus Uncharacterized conserved protein, contains SPRY domain [Function unknown]
Probab=99.72 E-value=2.5e-16 Score=134.91 Aligned_cols=166 Identities=23% Similarity=0.284 Sum_probs=134.0
Q ss_pred CCCCCCCC-CeEEeCcCCCCCCeEEcCCCceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCC
Q 013831 34 ASGPRSQK-QRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQ 112 (435)
Q Consensus 34 ~~~~~~~~-~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~ 112 (435)
.+-++++. ..|.||.....+++.|-+.++++++ .+++.|+.++...|-||||+|.+ .
T Consensus 18 ~s~~rl~e~P~V~LD~~hMG~dVvilk~g~RicG---------tGG~lAtaPlvQnKsYFevkiQ~-------------t 75 (197)
T KOG4030|consen 18 ASYPRLNEVPTVRLDVGHMGKDVVILKEGERICG---------TGGALATAPLVQNKSYFEVKIQQ-------------T 75 (197)
T ss_pred ccchhhhcCCcEEeehhccCCcEEEEecCcEEec---------cCceeeeeeeecccceEEEEEee-------------c
Confidence 34445554 7899999999999999999999874 47899999999999999999985 5
Q ss_pred CcEEEEEecCCCC--CCCCCCCCcceEEecCCceEeCCCcc---cCCCCCCCCCEEEEEEecCCCCceeEEEEeCcccee
Q 013831 113 HVCRVGTSRGDDP--VGKLGETEQSFGFGGTGKFSHGGNFL---NFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLG 187 (435)
Q Consensus 113 ~~~rvG~s~~~~~--~~~lG~d~~S~gy~~~G~~~~~~~~~---~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~lg 187 (435)
|.+.||.++++++ ..+.|.|.+||+.+++|...||.... +-..--.+|||||+..|. .++.|+.||+.+-
T Consensus 76 G~WgiGlat~q~~l~~~p~g~d~~sw~~r~dga~~hnnee~~r~pa~~~p~EGDvVGvayDH-----VELnfY~NGKn~e 150 (197)
T KOG4030|consen 76 GTWGIGLATKQSPLDKVPGGCDEKSWGIRDDGAIAHNNEEVARMPATVFPEEGDVVGVAYDH-----VELNFYVNGKNVE 150 (197)
T ss_pred ceeeeeeeeccCccccCCCCCcceeEEEccCCchhcccHHHhcCccccCCccCcEEEEEeee-----EEEEEEEcCceec
Confidence 8999999998765 45789999999999999999987643 112224899999999986 4789999999998
Q ss_pred ecccccCCCCCccccccccccccCCCceeeEEEEc-CeEEEEEccCCCCCCCccccchh
Q 013831 188 TAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVEQGLIPVEGYKSW 245 (435)
Q Consensus 188 ~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~-~~~v~~nFG~~~~~~p~~g~~p~ 245 (435)
..++. ..+++||.|.+. ++.+.+.|-. +..-||+||..+
T Consensus 151 ~p~~g------------------vRG~vyPvvYVddsAILD~~f~n-F~h~PPpGFe~I 190 (197)
T KOG4030|consen 151 DPITG------------------VRGPVYPVVYVDDSAILDLKFKN-FTHAPPPGFEEI 190 (197)
T ss_pred ccccc------------------cccceeeEEEeCCceEEEEEecc-cccCCCCChhhe
Confidence 87751 156999999998 6667777733 455677887654
No 12
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.70 E-value=2.5e-16 Score=151.60 Aligned_cols=133 Identities=24% Similarity=0.513 Sum_probs=102.4
Q ss_pred EEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~ 345 (435)
||+|+|+|||||||+|+.+++.+. +..+++++.|.+++.+.. +...++.. +......+++.++..+.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~--------~~~~~e~~---~~~~~~~~i~~~l~~~~ 69 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV--------WKEKYEEF---IRDSTLYLIKTALKNKY 69 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH--------hhHHhHHH---HHHHHHHHHHHHHhCCC
Confidence 589999999999999999998763 234778888888765421 11112211 22233446677788999
Q ss_pred eEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCC
Q 013831 346 NFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN 415 (435)
Q Consensus 346 ~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~ 415 (435)
.||+|++|+...+|..+++.+..++ .+++|+|.+| +++++|+..| +..+|++++.+|..+|+.|..
T Consensus 70 ~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R----~~~~~~~~i~~l~~r~e~p~~ 137 (249)
T TIGR03574 70 SVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIER----GEKIPNEVIKDMYEKFDEPGT 137 (249)
T ss_pred eEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhC----CCCCCHHHHHHHHHhhCCCCC
Confidence 9999999999999998777777766 7888999987 9999999988 456889999999999998864
No 13
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.69 E-value=4.3e-16 Score=153.69 Aligned_cols=140 Identities=22% Similarity=0.360 Sum_probs=103.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~ 345 (435)
+.+|+|+|+|||||||+|+.+++.+++ +..|+.|.++..+...+....+.|....+.. ........+..++..|.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~--~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~g~ 76 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPK--AVNVNRDDLRQSLFGHGEWGEYKFTKEKEDL---VTKAQEAAALAALKSGK 76 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCC--CEEEeccHHHHHhcCCCcccccccChHHHHH---HHHHHHHHHHHHHHcCC
Confidence 479999999999999999999999842 7889999988764211111112232211111 12233345566678899
Q ss_pred eEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCC
Q 013831 346 NFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLP 413 (435)
Q Consensus 346 ~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P 413 (435)
+||||+|+.++.+|..+.++++.++ .+.+|++.++ +++++|+.+| +++.+|++++++|+++++.+
T Consensus 77 ~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R---~~~~~~~~~i~~~~~~~~~~ 143 (300)
T PHA02530 77 SVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKR---GERAVPEDVLRSMFKQMKEY 143 (300)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHcc---CcCCCCHHHHHHHHHHHHHh
Confidence 9999999999999997666666665 6777888887 8999999999 36789999999998888744
No 14
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=99.69 E-value=5.8e-17 Score=172.88 Aligned_cols=148 Identities=27% Similarity=0.426 Sum_probs=118.9
Q ss_pred eeeEee--cceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCC-CCCCCCCCCcceEEecC-CceEeCCCcc
Q 013831 76 WSGARA--NVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDD-PVGKLGETEQSFGFGGT-GKFSHGGNFL 151 (435)
Q Consensus 76 ~~~~ra--~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s~~~~-~~~~lG~d~~S~gy~~~-G~~~~~~~~~ 151 (435)
++-.|+ +|+|..|+||||..... .|.+||||+...| ++..+|.|...|+|++. ++.+| ....
T Consensus 1092 ~r~fr~eksyavkagkwyfefe~vt-------------~gdmrvgwarpgc~pd~elgadd~af~fdg~k~qrwh-qg~~ 1157 (5019)
T KOG2243|consen 1092 FRFFRAEKSYAVKAGKWYFEFETVT-------------AGDMRVGWARPGCQPDQELGADDQAFAFDGFKAQRWH-QGNE 1157 (5019)
T ss_pred eEEEeeehhheeeccceEEEEEEee-------------ccceeecccCCCCCcchhhCCccceeeeccchhhhhh-cccc
Confidence 444454 58899999999999884 5899999999876 47899999999999875 44444 4456
Q ss_pred cCCCCCCCCCEEEEEEecCCCCceeEEEEeCccceeecccccCCCCCccccccccccccCCCceeeEEEEc-CeEEEEEc
Q 013831 152 NFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQF 230 (435)
Q Consensus 152 ~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~lg~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~-~~~v~~nF 230 (435)
.||..|+.||||||+||++. .+|.||+||+.|-.. ....|++++.|+ ++.|.|.+++. ...-++||
T Consensus 1158 ~~grswq~gdvvgcmi~l~d---~sm~ftlngeili~~-----~gselaf~d~di-----~~gfipic~lg~aqigrmn~ 1224 (5019)
T KOG2243|consen 1158 HFGRSWQAGDVVGCMIDLDD---ASMIFTLNGEILIDD-----KGSELAFADFDI-----EDGFIPICCLGLAQIGRMNF 1224 (5019)
T ss_pred ccccccCCCCeEEEEEeccc---ceEEEEEcCeEEEcC-----CCCeeeeccccc-----cCCceeeeehhhHhhccccc
Confidence 89999999999999999998 799999999988643 223466777775 57899999998 66679999
Q ss_pred cCCC---C----CCCccccchhhhhcc
Q 013831 231 SVEQ---G----LIPVEGYKSWVSALD 250 (435)
Q Consensus 231 G~~~---~----~~p~~g~~p~~~~~~ 250 (435)
|... + |-.++||.||+-++.
T Consensus 1225 g~d~st~k~~ticglqeg~epfavn~n 1251 (5019)
T KOG2243|consen 1225 GKDASTFKFFTICGLQEGFEPFAVNMN 1251 (5019)
T ss_pred CCcccceeeeeeecccccCccceeccc
Confidence 9863 2 456899999987654
No 15
>KOG3953 consensus SOCS box protein SSB-1, contains SPRY domain [General function prediction only]
Probab=99.67 E-value=8.3e-16 Score=140.88 Aligned_cols=166 Identities=22% Similarity=0.321 Sum_probs=132.7
Q ss_pred CCCCCCeEEeCcCCCCCCeEEcCCC-ceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcE
Q 013831 37 PRSQKQRVVLNPADCDLDFDIEDNG-LKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVC 115 (435)
Q Consensus 37 ~~~~~~~v~l~~~d~~~~l~is~d~-l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~ 115 (435)
..+.+..+.||+.|++.++.+-.++ ++.+-+.. +....++|+..+...|..+|||.+...+ .+.+.
T Consensus 20 ~~~~~~~~~w~~~drs~nv~vk~~~~~tfhrhpv---aqstd~~rGk~g~~~g~h~w~i~w~~r~----------~GT~a 86 (242)
T KOG3953|consen 20 ALGVQAQHGWSPSDRSLNVFVKLPDGLTFHRHPV---AQSTDGIRGKRGYSRGRHAWEIAWPNRQ----------RGTHA 86 (242)
T ss_pred chhhHHhhccCcccccceeEEecCCcceEEecCC---ccccccccceeeeccCceEEEEEecCCc----------cCCcc
Confidence 3455556999999999999998876 77654322 3458999999999999999999998743 23456
Q ss_pred EEEEecCCCC------CCCCCCCCcceEEe-cCCceEeCCCc-ccC-----CCCCCCCCEEEEEEecCCCCceeEEEEeC
Q 013831 116 RVGTSRGDDP------VGKLGETEQSFGFG-GTGKFSHGGNF-LNF-----GEKFGVGDTIICAIDLESKPLATIGFAKN 182 (435)
Q Consensus 116 rvG~s~~~~~------~~~lG~d~~S~gy~-~~G~~~~~~~~-~~y-----g~~f~~gDvIGc~ld~~~~p~~~i~ft~N 182 (435)
-||.+|..++ ...||++.+|||++ +....+|++.. ..| .+.|..+|.|.|.||++. +++.|.+|
T Consensus 87 vVGIaTk~Aplha~gy~aLlGs~~qswGw~l~~~~l~H~g~~~~~yp~~~~~p~~~vp~ri~viLDm~e---gtl~F~~~ 163 (242)
T KOG3953|consen 87 VVGIATKVAPLHAVGYTALLGSNSQSWGWDLGRNVLYHDGQVAGLYPALNRQPKYNVPDRILVILDMIE---GTLSFAAD 163 (242)
T ss_pred eEEEEcccCchhhhHHHHHhCCCCCccceecccceeeecCccccccccccCCchhcCCceEEEEEeecc---ceEEEEEC
Confidence 6888887764 46899999999998 45678888732 122 467999999999999999 89999999
Q ss_pred ccceeecccccCCCCCccccccccccccCCCceeeEEEEc--CeEEEEEccCCCC
Q 013831 183 GKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK--NVVVVMQFSVEQG 235 (435)
Q Consensus 183 G~~lg~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~--~~~v~~nFG~~~~ 235 (435)
|++||+||+. + .+..|||+||.. ++++++-+=..+.
T Consensus 164 ~e~LGvAFRg---L--------------~~~~LYP~Vsav~g~~Evtm~Ylg~~~ 201 (242)
T KOG3953|consen 164 GEYLGVAFRG---L--------------KDKKLYPAVSAVWGHCEVTMKYLGTLD 201 (242)
T ss_pred CeEEeeeecC---C--------------CCCcceeeeeehhcceeEEEEEeCCcC
Confidence 9999999972 2 267999999986 8999998866554
No 16
>COG0645 Predicted kinase [General function prediction only]
Probab=99.66 E-value=4.3e-15 Score=131.72 Aligned_cols=155 Identities=17% Similarity=0.099 Sum_probs=115.2
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccC---CCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRK---HNYSERFQCLMGRANAIFDVLLSRASRT 343 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~ll~~al~~ 343 (435)
++++|+|+|||||||+|+.+.+.++ +++|.+|.+|+.|.-.+..+. ..|++. +.+.....+....+.++..
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lg---A~~lrsD~irk~L~g~p~~~r~~~g~ys~~---~~~~vy~~l~~~A~l~l~~ 75 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLG---AIRLRSDVIRKRLFGVPEETRGPAGLYSPA---ATAAVYDELLGRAELLLSS 75 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcC---ceEEehHHHHHHhcCCcccccCCCCCCcHH---HHHHHHHHHHHHHHHHHhC
Confidence 6899999999999999999999998 789999999998742111111 124432 2222233344455666899
Q ss_pred CCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCCCCCCCC
Q 013831 344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKDTPGS 421 (435)
Q Consensus 344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~~~~~~~ 421 (435)
|.+||+|+|+..+.+|..+...++.-+ .+.+|.|+.| +++..|+..|.. ...+-.-.+++.+...++..+..+.++.
T Consensus 76 G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~-d~sDA~~~il~~q~~~~~~~~~~~~~~~ 154 (170)
T COG0645 76 GHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG-DASDATFDILRVQLAEDEPWTEWETADT 154 (170)
T ss_pred CCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC-CcccchHHHHHHHHhhhCCcccccchhh
Confidence 999999999999999998666666655 7788899988 899999999952 1233346788888899988877777777
Q ss_pred Cccccee
Q 013831 422 DELFDQR 428 (435)
Q Consensus 422 ~e~Fd~i 428 (435)
..-|+..
T Consensus 155 ~~~~~~~ 161 (170)
T COG0645 155 DTARTRD 161 (170)
T ss_pred ccccccc
Confidence 7776654
No 17
>PRK06762 hypothetical protein; Provisional
Probab=99.61 E-value=2.9e-15 Score=134.98 Aligned_cols=134 Identities=16% Similarity=0.125 Sum_probs=96.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~ 345 (435)
+.+|+|+|+|||||||+|+.+++.++. .+++++.|.++..+. +...... ...++. +..++..+++.|.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~-~~~~i~~D~~r~~l~--~~~~~~~-~~~~~~--------~~~~~~~~~~~g~ 69 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGR-GTLLVSQDVVRRDML--RVKDGPG-NLSIDL--------IEQLVRYGLGHCE 69 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC-CeEEecHHHHHHHhc--cccCCCC-CcCHHH--------HHHHHHHHHhCCC
Confidence 579999999999999999999998852 377889999887652 1110000 011111 1223444567899
Q ss_pred eEEEeCCCcCHHHHHHHHHHHh-cCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCC
Q 013831 346 NFIIDQTNVFKSARKRKLRLFV-NFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPV 414 (435)
Q Consensus 346 ~vIlD~Tn~~~~~R~~~~~~~~-~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~ 414 (435)
+||+|.++....+|.. ++.++ .++ ++.+|++++| +++++|+.+|.. .+..+++.++++++.++.+.
T Consensus 70 ~vild~~~~~~~~~~~-~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~--~~~~~~~~l~~~~~~~~~~~ 138 (166)
T PRK06762 70 FVILEGILNSDRYGPM-LKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK--SHEFGEDDMRRWWNPHDTLG 138 (166)
T ss_pred EEEEchhhccHhHHHH-HHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc--cccCCHHHHHHHHhhcCCcC
Confidence 9999999877776764 55444 444 6788999987 999999999953 45678999999998887553
No 18
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.59 E-value=2.2e-14 Score=126.95 Aligned_cols=134 Identities=16% Similarity=0.217 Sum_probs=92.4
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhc----cCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK----VPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~----~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~ 343 (435)
||+|+|+|||||||+|+.+++.++ +..++.|.++.... ..|..........|. ..... ......+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~---~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~l~~~ 71 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLG---APFIDGDDLHPPANIAKMAAGIPLNDEDRWPWL---QALTD---ALLAKLASA 71 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcC---CEEEeCcccccHHHHHHHHcCCCCCccchhhHH---HHHHH---HHHHHHHhC
Confidence 589999999999999999999875 56788898765311 123211000012221 11111 112122257
Q ss_pred CCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCC
Q 013831 344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN 415 (435)
Q Consensus 344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~ 415 (435)
+.+||+|+++.....|+. ++.++ ++ .+.+|+|.++ +++.+|+..|. ++..+.+.+..+.+.|++|+.
T Consensus 72 ~~~vVid~~~~~~~~r~~-~~~~~-~~~~~~~v~l~~~~~~~~~R~~~R~---~~~~~~~~~~~~~~~~~~p~~ 140 (150)
T cd02021 72 GEGVVVACSALKRIYRDI-LRGGA-ANPRVRFVHLDGPREVLAERLAARK---GHFMPADLLDSQFETLEPPGE 140 (150)
T ss_pred CCCEEEEeccccHHHHHH-HHhcC-CCCCEEEEEEECCHHHHHHHHHhcc---cCCCCHHHHHHHHHHhcCCCC
Confidence 889999999999888875 44443 33 6788899887 89999999994 455779999999999999986
No 19
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.52 E-value=2.4e-13 Score=135.49 Aligned_cols=144 Identities=16% Similarity=0.201 Sum_probs=98.5
Q ss_pred EEEEEccCCCChhHHHHHHHhhCC---CccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHH-------------
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANA------------- 331 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~---~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~------------- 331 (435)
+.+++|+|||||||+++.+...+. +..+.+++.|+++......+.. ...-...|....+...+
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~-~~~~~~~~k~~R~~i~~~le~~v~a~~~g~ 79 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQ-SREIPSQWKQFRQELLKYLEHFLVAVINGS 79 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhc-CCCcHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 468999999999999999886542 2336678888765211100000 00011122111111111
Q ss_pred -----------------------------------HHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEE
Q 013831 332 -----------------------------------IFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVV 375 (435)
Q Consensus 332 -----------------------------------~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv 375 (435)
....++..++.++..||||++|+.+.+|.+++++++.++ .+++|
T Consensus 80 ~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V 159 (340)
T TIGR03575 80 ELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQL 159 (340)
T ss_pred cccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 112233334456678999999999999999888888876 88999
Q ss_pred EECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCCC
Q 013831 376 VFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNK 416 (435)
Q Consensus 376 ~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~~ 416 (435)
+|++| +++++||.+| +..+|+++++.|..+||.|...
T Consensus 160 ~ld~ple~~l~RN~~R----~~~v~devie~m~~r~E~P~~~ 197 (340)
T TIGR03575 160 FLDCPVESCLLRNKQR----PVPLPDETIQLMGRKIEKPNPE 197 (340)
T ss_pred EEeCCHHHHHHHHhcC----CCCCCHHHHHHHHHHhcCCCCC
Confidence 99998 9999999999 4679999999999999999853
No 20
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=99.48 E-value=9.2e-13 Score=123.84 Aligned_cols=145 Identities=19% Similarity=0.210 Sum_probs=93.1
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCC---hHHHHHHH-HHHHHHHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNY---SERFQCLM-GRANAIFDVLLS 338 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~---~~~~~~~~-~~~~~~~~~ll~ 338 (435)
..-+|+||||||+|||++|++|++.+. +-+..+++....|+++..... ....| .....++. +.+..++..++.
T Consensus 11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~-~~~ff~p~n~~~~~~R~~~a~~~l~dl~~ 89 (222)
T PF01591_consen 11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQ-DAEFFDPDNEEAKKLREQIAKEALEDLIE 89 (222)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S--GGGGSTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceeccccccc-ccccCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999998753 223567777788887642110 01112 22222233 346678888888
Q ss_pred HHh-cCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECC---hHHHHHHHHHhhhhc----CCCCcHHHHHHHHhcc
Q 013831 339 RAS-RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK---PEDLKIRSVKRFKEM----GKEVPADAVNNMLANY 410 (435)
Q Consensus 339 ~al-~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~---~ee~~~R~~~R~~~~----~~~vp~~vi~~m~~~f 410 (435)
... +.|...|+|+||.+++.|+.+++.+...+ +.++++++ +++++++|..+.... .+..++++++++++++
T Consensus 90 ~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~-~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~A~~Df~~RI 168 (222)
T PF01591_consen 90 WLQEEGGQVAIFDATNSTRERRKMLVERFKEHG-IKVLFIESICDDPEIIERNIREKKQNSPDYKGMDPEEAIEDFKKRI 168 (222)
T ss_dssp HHHTS--SEEEEES---SHHHHHHHHHHHHHTT--EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHHHHHHHHHHH
T ss_pred HHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcC-CcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHH
Confidence 877 68899999999999999999888888765 55555543 368888888876544 2345678888887765
Q ss_pred c
Q 013831 411 V 411 (435)
Q Consensus 411 e 411 (435)
+
T Consensus 169 ~ 169 (222)
T PF01591_consen 169 E 169 (222)
T ss_dssp H
T ss_pred H
Confidence 4
No 21
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.44 E-value=1.9e-12 Score=117.88 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=80.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc-c-CCCChH---HH-HHHHHHHHHHHHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL-R-KHNYSE---RF-QCLMGRANAIFDVLLSR 339 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~-~-~~~~~~---~~-~~~~~~~~~~~~~ll~~ 339 (435)
.++|+|+|+|||||||+|+.+++..+. .+++++.|.++..+...... . ...+.+ .+ +.........+...+..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 80 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAE-PWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAA 80 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCC-CccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHH
Confidence 368999999999999999999988753 26788899887654210000 0 000101 00 11222333344456667
Q ss_pred HhcCCCeEEEeCCCc-CHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831 340 ASRTPRNFIIDQTNV-FKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 340 al~~g~~vIlD~Tn~-~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
++++|.+||+|+++. ....|. .++.+.. .++.+|+|.++ +++.+|+.+|.
T Consensus 81 ~l~~G~~VIvD~~~~~~~~~r~-~~~~~~~-~~~~~v~l~~~~~~l~~R~~~R~ 132 (175)
T cd00227 81 MARAGANVIADDVFLGRAALQD-CWRSFVG-LDVLWVGVRCPGEVAEGRETARG 132 (175)
T ss_pred HHhCCCcEEEeeeccCCHHHHH-HHHHhcC-CCEEEEEEECCHHHHHHHHHhcC
Confidence 789999999999988 455554 3554433 25778888876 89999999983
No 22
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=99.43 E-value=1.4e-13 Score=128.03 Aligned_cols=142 Identities=19% Similarity=0.209 Sum_probs=86.0
Q ss_pred CCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (435)
Q Consensus 263 ~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~ 342 (435)
...+.+++|.|.|||||||++..+...+....+++|+.|.++..+...-.+...............+......+++.++.
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~ 91 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIE 91 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999998872234889999998654310000000000000122333355556678888899
Q ss_pred CCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhc------CCCCcHHHHH
Q 013831 343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEM------GKEVPADAVN 404 (435)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~------~~~vp~~vi~ 404 (435)
.+.++|+|.|+..++.-.++++.++..+ .+.++++.++ +..+.|+..|..++ ++.||.+.+.
T Consensus 92 ~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~~~~~~~g~GR~v~~~~~~ 161 (199)
T PF06414_consen 92 NRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYEEGLQAKGIGRFVPEEKHD 161 (199)
T ss_dssp CT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHHHHC-C-TT-----HCCCH
T ss_pred cCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHHccccccCCCcCCCHHHHH
Confidence 9999999999988877776788888755 7777788776 88899999998777 7888854433
No 23
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.42 E-value=2.9e-12 Score=115.01 Aligned_cols=129 Identities=19% Similarity=0.238 Sum_probs=87.1
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH-----HhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE-----QMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~-----~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~ 343 (435)
|+|+|+|||||||+|+.++..++ ...++.|.+.. .+ ..|.. ......+... .. +...+..++..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~---~~~v~~D~~~~~~~~~~~-~~~~~--~~~~~~~~~~-~~----~~~~~~~~l~~ 69 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG---AKFIEGDDLHPAANIEKM-SAGIP--LNDDDRWPWL-QN----LNDASTAAAAK 69 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC---CeEEeCccccChHHHHHH-HcCCC--CChhhHHHHH-HH----HHHHHHHHHhc
Confidence 57899999999999999999986 56788888632 11 12211 0111111111 11 11233334567
Q ss_pred CCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCC
Q 013831 344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN 415 (435)
Q Consensus 344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~ 415 (435)
|.++|||+|++.+..|.. ++ .++ .+.+++|.++ +++.+|++.|. ++.++.+.++.++..++.|..
T Consensus 70 ~~~~Vi~~t~~~~~~r~~-~~---~~~~~~~~i~l~~~~e~~~~R~~~R~---~~~~~~~~i~~~~~~~~~~~~ 136 (163)
T TIGR01313 70 NKVGIITCSALKRHYRDI-LR---EAEPNLHFIYLSGDKDVILERMKARK---GHFMKADMLESQFAALEEPLA 136 (163)
T ss_pred CCCEEEEecccHHHHHHH-HH---hcCCCEEEEEEeCCHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCCCCC
Confidence 778899999988777764 33 333 6778888876 89999999994 345678889999988888864
No 24
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.37 E-value=1.9e-11 Score=113.44 Aligned_cols=129 Identities=15% Similarity=0.182 Sum_probs=85.8
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhcc-CCC---ccCCCChHHH---------------HHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV-PGL---LRKHNYSERF---------------QCL 325 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~-~G~---~~~~~~~~~~---------------~~~ 325 (435)
++.+|+++|+|||||||+|+.++..++- ..++++|.+|+.++- .+. +....| ..| ...
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~--~~~~~~D~~r~~~r~~~~~~p~l~~s~~-~a~~~~~~~~~~~~~~~y~~q 78 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAI--DIVLSGDYLREFLRPYVDDEPVLAKSVY-DAWEFYGSMTDENIVKGYLDQ 78 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCC--eEEehhHHHHHHHHHhcCCCCCcccccH-HHHHHcCCcchhHHHHHHHHH
Confidence 3579999999999999999999999763 357888999888752 111 000000 111 111
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECChHHHHHHHHHhhhhcCCCCcH
Q 013831 326 MGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKPEDLKIRSVKRFKEMGKEVPA 400 (435)
Q Consensus 326 ~~~~~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~ee~~~R~~~R~~~~~~~vp~ 400 (435)
.+.....+..+++.++..|.+||+|++++.+..+... .... .+.++++++++++++|...|....++..|.
T Consensus 79 ~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~----~~~~v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~ 150 (197)
T PRK12339 79 ARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDEN----RTNNIRAFYLYIRDAELHRSRLADRINYTHKNSPG 150 (197)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHH----HhcCeEEEEEEeCCHHHHHHHHHHHhhcccCCCcH
Confidence 1222334666777889999999999999999876531 1112 233345566688999999997655555664
No 25
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=99.32 E-value=7.2e-12 Score=115.19 Aligned_cols=141 Identities=18% Similarity=0.189 Sum_probs=101.7
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCC---ccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPE---KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~---~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~ 343 (435)
-||++||+|.|||||.|+.|...+.. |..+.+..|+. ++ ..+...|... ...+.++..++..+++-+.+
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des---lg---~~~ns~y~~s--~~EK~lRg~L~S~v~R~Lsk 73 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES---LG---IEKNSNYGDS--QAEKALRGKLRSAVDRSLSK 73 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh---cC---CCCccccccc--HHHHHHHHHHHHHHHhhccc
Confidence 58999999999999999998766542 32455555542 33 2122233221 11222334456677788899
Q ss_pred CCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCC
Q 013831 344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN 415 (435)
Q Consensus 344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~ 415 (435)
+..||+|+-|+.+..|.+++...+... .+++|++..| |.|.+.|..|...+...-++++++.+..+||.|.-
T Consensus 74 ~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p~e~gy~~e~le~L~~RyEeP~s 147 (281)
T KOG3062|consen 74 GDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSEREDPGEDGYDDELLEALVQRYEEPNS 147 (281)
T ss_pred CcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCCCCCCCCCHHHHHHHHHHhhCCCc
Confidence 999999999999999998877776655 7888998888 88999998885443334679999999999998853
No 26
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.30 E-value=2.4e-11 Score=107.82 Aligned_cols=112 Identities=18% Similarity=0.180 Sum_probs=75.7
Q ss_pred EEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChHH-HHHHHHHHHHHHHHHHHHHhcCC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSRASRTP 344 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~ll~~al~~g 344 (435)
+|+|+|+|||||||+|+.+++.+. +..++.++.|.+++.+. +.. .+.+. ....+.. +...+...+++|
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~--~~~---~~~~~~~~~~~~~----~~~~a~~l~~~G 71 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLN--KDL---GFSREDREENIRR----IAEVAKLLADAG 71 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhh--hcc---CCCcchHHHHHHH----HHHHHHHHHhCC
Confidence 588999999999999999998763 22367788898887653 111 12111 1111111 112333445789
Q ss_pred CeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHH
Q 013831 345 RNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK 389 (435)
Q Consensus 345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~ 389 (435)
.+||+|+|+..+..|..+ +.+.....+.+|+|.+| +++.+|+.+
T Consensus 72 ~~VIid~~~~~~~~R~~~-~~l~~~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 72 LIVIAAFISPYREDREAA-RKIIGGGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred CEEEEccCCCCHHHHHHH-HHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence 999999999999998864 44443337888999987 889888654
No 27
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=4.1e-11 Score=104.29 Aligned_cols=141 Identities=19% Similarity=0.241 Sum_probs=103.9
Q ss_pred CCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH-----HHHhccCCCccCCCChHHHHHHHHHHHHHHHHHH
Q 013831 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-----LEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLL 337 (435)
Q Consensus 263 ~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i-----r~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll 337 (435)
.+-.-+|++.|..||||||+++.+.+++. +-.+..|++ +++|+ .|.+ -+..++|.++...... +
T Consensus 9 ~~~k~~i~vmGvsGsGKSTigk~L~~~l~---~~F~dgDd~Hp~~NveKM~-~Gip--LnD~DR~pWL~~i~~~-----~ 77 (191)
T KOG3354|consen 9 GPFKYVIVVMGVSGSGKSTIGKALSEELG---LKFIDGDDLHPPANVEKMT-QGIP--LNDDDRWPWLKKIAVE-----L 77 (191)
T ss_pred CCCceeEEEEecCCCChhhHHHHHHHHhC---CcccccccCCCHHHHHHHh-cCCC--CCcccccHHHHHHHHH-----H
Confidence 34345899999999999999999999987 444555543 67775 3432 1345677777664432 2
Q ss_pred HHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcC-----C--cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhc
Q 013831 338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNF-----R--KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLAN 409 (435)
Q Consensus 338 ~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~-----~--~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~ 409 (435)
..++..|.-|||-.+.+.+.+|+-+-..+..+ . .+.+|++... |++.+|+.+|. +|..|.+.++.+++-
T Consensus 78 ~~~l~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~---gHFMp~~lleSQf~~ 154 (191)
T KOG3354|consen 78 RKALASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRK---GHFMPADLLESQFAT 154 (191)
T ss_pred HHHhhcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcc---cccCCHHHHHHHHHh
Confidence 33345899999999999999998543333322 1 3567888887 99999999994 799999999999999
Q ss_pred ccCCCCCC
Q 013831 410 YVLPVNKD 417 (435)
Q Consensus 410 fe~P~~~~ 417 (435)
+|+|+..+
T Consensus 155 LE~p~~~e 162 (191)
T KOG3354|consen 155 LEAPDADE 162 (191)
T ss_pred ccCCCCCc
Confidence 99998744
No 28
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=99.23 E-value=4e-12 Score=136.79 Aligned_cols=151 Identities=25% Similarity=0.355 Sum_probs=112.1
Q ss_pred cceeeEeec--ceeeCC-----EEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCC----C-------CCCCCCCCcc
Q 013831 74 YCWSGARAN--VGINGG-----KYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDD----P-------VGKLGETEQS 135 (435)
Q Consensus 74 ~~~~~~ra~--~gv~~G-----~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s~~~~----~-------~~~lG~d~~S 135 (435)
...+++|.| .||..| +||||..|....|.. ..+..++||||+..+. + ...+|+|-+|
T Consensus 656 n~vss~rpniflgvaegsaqykkwy~el~id~~dpf~-----tae~thlrvgwass~gyap~pggge~wggngvgddl~s 730 (5019)
T KOG2243|consen 656 NDVSSIRPNIFLGVAEGSAQYKKWYFELIIDHTDPFL-----TAEATHLRVGWASSEGYAPCPGGGEEWGGNGVGDDLFS 730 (5019)
T ss_pred hhhhhcCCceeEeeccchHHHHHHHHHHhhhcCCcce-----ecccceeeeeeeccCCCCCCCCCcccccCCCccchhhh
Confidence 356788888 466665 899999998754421 1246799999987542 2 4589999999
Q ss_pred eEEecC----CceEeCCCcccCCCCCCCCCEEEEEEecCCCCceeEEEEeCccceeecccccCCCCCccccccccccccC
Q 013831 136 FGFGGT----GKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSAVKERQC 211 (435)
Q Consensus 136 ~gy~~~----G~~~~~~~~~~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~lg~af~~~~~~~~l~~~~~~~~g~~~ 211 (435)
|||++- |.+. +....+--.-....|||.|++|+-. ..|+|..||+.+.-.|+... .
T Consensus 731 ygfdglhlwsg~i~-r~vas~nqhllrsddvisccldl~~---psisfringqpvqgmfenfn----------------~ 790 (5019)
T KOG2243|consen 731 YGFDGLHLWSGCIA-RAVASPNQHLLRSDDVISCCLDLGA---PSISFRINGQPVQGMFENFN----------------I 790 (5019)
T ss_pred cCCCcchhhcccch-hhhcChhhhhhcccchhhhhhhcCC---CceEEEECCccchhHHhcCC----------------C
Confidence 999762 3321 1111222334788999999999987 68999999999877776321 2
Q ss_pred CCceeeEEEEc-CeEEEEEccCC---CCCCCccccchhhhhc
Q 013831 212 ESAVFPHILLK-NVVVVMQFSVE---QGLIPVEGYKSWVSAL 249 (435)
Q Consensus 212 ~~~lfP~v~l~-~~~v~~nFG~~---~~~~p~~g~~p~~~~~ 249 (435)
.+-|||.+|+. +..|++-.|.+ +++.||+||.|...+.
T Consensus 791 dglffpv~sfsagikvrfllggrhgefkflpp~gyapcyea~ 832 (5019)
T KOG2243|consen 791 DGLFFPVMSFSAGIKVRFLLGGRHGEFKFLPPPGYAPCYEAL 832 (5019)
T ss_pred cceeeeeEeeccCeEEEEEecccccceeecCCCCCccHHHHh
Confidence 57899999998 89999999985 5788999999987654
No 29
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.20 E-value=2.6e-10 Score=104.16 Aligned_cols=117 Identities=25% Similarity=0.313 Sum_probs=72.5
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEecc-HHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhc
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR 342 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~-D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~ 342 (435)
+|+|+|+|||||||+|+.+++.++ +.+||. |.+++++. .+. ......+.+... ....+..++..++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~---~~~is~~d~lr~~~~-~~~----~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 72 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG---FTHLSAGDLLRAEIK-SGS----ENGELIESMIKNGKIVPSEVTVKLLKNAIQ 72 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC---CeEEECChHHHHHHh-cCC----hHHHHHHHHHHCCCcCCHHHHHHHHHHHHh
Confidence 589999999999999999999987 778887 55565543 111 011111111100 00112233333332
Q ss_pred --CCCeEEEeCCCcCHHHHHHHHHHHhcC-CcEEEEEECCh-HHHHHHHHHhhh
Q 013831 343 --TPRNFIIDQTNVFKSARKRKLRLFVNF-RKIAVVVFPKP-EDLKIRSVKRFK 392 (435)
Q Consensus 343 --~g~~vIlD~Tn~~~~~R~~~~~~~~~~-~~~~vv~l~~~-ee~~~R~~~R~~ 392 (435)
.++.+|||....+..++..+.+.+... ..-.+++++.+ +++++|+..|..
T Consensus 73 ~~~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~ 126 (183)
T TIGR01359 73 ADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQ 126 (183)
T ss_pred ccCCCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence 267899999888887777544444332 22246788887 889999999853
No 30
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.20 E-value=2e-10 Score=105.39 Aligned_cols=114 Identities=19% Similarity=0.157 Sum_probs=77.6
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCC--ccEEEeccHHHHHHhccCCCccCCCChHH-HHHHHHHHHHHHHHHHHHHh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSRAS 341 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls~D~ir~~~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~ll~~al 341 (435)
.+.+|+|+|+|||||||+|+.+...+.. ..++.++.|.++..+. +. ..|... ....+.. +..+....+
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~--~~---~~~~~~~~~~~~~~----~~~~~~~~~ 87 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLN--KD---LGFSEEDRKENIRR----IGEVAKLFV 87 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhc--cc---cCCCHHHHHHHHHH----HHHHHHHHH
Confidence 4689999999999999999999987532 2267888899887653 21 122221 1111111 122334456
Q ss_pred cCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH
Q 013831 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV 388 (435)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~ 388 (435)
++|.+||+|+++..+.+|..+...+... .+.+|+++++ +++.+|+.
T Consensus 88 ~~G~~VI~d~~~~~~~~r~~~~~~~~~~-~~~~v~l~~~~e~~~~R~~ 134 (184)
T TIGR00455 88 RNGIIVITSFISPYRADRQMVRELIEKG-EFIEVFVDCPLEVCEQRDP 134 (184)
T ss_pred cCCCEEEEecCCCCHHHHHHHHHhCcCC-CeEEEEEeCCHHHHHHhCc
Confidence 8999999999999999887643333332 5778999987 88888854
No 31
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=99.19 E-value=2.4e-10 Score=112.87 Aligned_cols=154 Identities=14% Similarity=0.176 Sum_probs=116.9
Q ss_pred EEeCcCCCCCCeEEcCCCceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCC
Q 013831 44 VVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGD 123 (435)
Q Consensus 44 v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s~~~ 123 (435)
++|++--+...+.+|.+.+++++- +..++.|.+..++..|.+||||+|.... ....+-||++...
T Consensus 535 fqlt~spsqrdmilsnecatlsgs-----sleyrtilgsiafskgvhywevtidrhd----------gnsdivigvaqpa 599 (699)
T KOG4367|consen 535 FQLTPSPSQRDMILSNECATLSGS-----SLEYRTILGSIAFSKGVHYWEVTIDRHD----------GNSDIVIGVAQPA 599 (699)
T ss_pred eeccCCchhhceeeecccceeccc-----ccchheeeeecccccceeEEEEEEeccC----------CCCCceEEecchh
Confidence 344555566679999998887653 4789999999999999999999999642 2356789999854
Q ss_pred C-CCCCCCCCCcceEEecCCc--eE-eCCCccc-CCCCCCCCCEEEEEEecCCCCceeEEEEeCcccee-ecccccCCCC
Q 013831 124 D-PVGKLGETEQSFGFGGTGK--FS-HGGNFLN-FGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLG-TAKQFDAGSN 197 (435)
Q Consensus 124 ~-~~~~lG~d~~S~gy~~~G~--~~-~~~~~~~-yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~lg-~af~~~~~~~ 197 (435)
- .+..+|-|.++|..-.+|. ++ ||....+ .--..+.|-|||+.||++. ++|.|+.|.+..+ +||. ++
T Consensus 600 vnrnvmlgkdlhgwsmyvdgerswylhnethhnrvlggvtrgtvigvrldcdr---gtmeytvndrqddsmaft---nm- 672 (699)
T KOG4367|consen 600 VNRNVMLGKDLHGWSMYVDGERSWYLHNETHHNRVLGGVTRGTVIGVRLDCDR---GTMEYTVNDRQDDSMAFT---NM- 672 (699)
T ss_pred hhhceeecccccceeEEEcCcceeEEeccccccccccccccccEEEEEEeccC---CceEEEeccccCCceeee---cc-
Confidence 2 2678999999999755554 43 4443322 2235789999999999998 8999999998654 5664 21
Q ss_pred CccccccccccccCCCceeeEEEEc-CeEEEEEccCC
Q 013831 198 GLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVE 233 (435)
Q Consensus 198 ~l~~~~~~~~g~~~~~~lfP~v~l~-~~~v~~nFG~~ 233 (435)
.+-|||++++. |..+.+.-|-.
T Consensus 673 --------------rglyypafsvnanssitvhtgls 695 (699)
T KOG4367|consen 673 --------------RGLYYPAFSVNANSSITVHTGLS 695 (699)
T ss_pred --------------cceeeeeeEeccCceEEEecCCC
Confidence 46799999998 89999988753
No 32
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.19 E-value=1.5e-10 Score=103.00 Aligned_cols=111 Identities=20% Similarity=0.207 Sum_probs=72.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCCh--HHHHHHHHHHHHHHHHHHHHHh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYS--ERFQCLMGRANAIFDVLLSRAS 341 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~--~~~~~~~~~~~~~~~~ll~~al 341 (435)
+.+|+|+|+|||||||+|+.+.+.+. +...+.|..|.+|..+. . +..|. .+++.+. + +..+.....
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~--~---dl~fs~~dR~e~~r-r----~~~~A~ll~ 71 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLN--A---DLGFSKEDREENIR-R----IAEVAKLLA 71 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTT--T---T--SSHHHHHHHHH-H----HHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccC--C---CCCCCHHHHHHHHH-H----HHHHHHHHH
Confidence 57899999999999999999987653 23478899998876542 1 22232 2222222 2 223444556
Q ss_pred cCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHH
Q 013831 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS 387 (435)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~ 387 (435)
++|..||++....+++.|...-+.+... ++..||+.+| ++|.+|.
T Consensus 72 ~~G~ivIva~isp~~~~R~~~R~~~~~~-~f~eVyv~~~~e~~~~RD 117 (156)
T PF01583_consen 72 DQGIIVIVAFISPYREDREWARELIPNE-RFIEVYVDCPLEVCRKRD 117 (156)
T ss_dssp HTTSEEEEE----SHHHHHHHHHHHHTT-EEEEEEEES-HHHHHHHT
T ss_pred hCCCeEEEeeccCchHHHHHHHHhCCcC-ceEEEEeCCCHHHHHHhC
Confidence 8999999999999999999644444432 6777899998 9999885
No 33
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.15 E-value=6e-10 Score=97.70 Aligned_cols=132 Identities=16% Similarity=0.116 Sum_probs=95.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~ 345 (435)
+.+.||.|+.||||||+.......+.. ..+++++|+|-.+.. .. .+. ...++ |.+.....+..+++.++
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~~-~~~~VN~D~iA~~i~--p~------~p~-~~~i~-A~r~ai~~i~~~I~~~~ 70 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLLP-GIVFVNADEIAAQIS--PD------NPT-SAAIQ-AARVAIDRIARLIDLGR 70 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhcC-CeEEECHHHHhhhcC--CC------Cch-HHHHH-HHHHHHHHHHHHHHcCC
Confidence 578899999999999997776654432 478999999865532 11 111 11222 22333445667789999
Q ss_pred eEEEeCCCcCHHHHHHHHHHHhcCC---cEEEEEECChHHHHHHHHHhhhhcCCCCcHHHHHHHHhc
Q 013831 346 NFIIDQTNVFKSARKRKLRLFVNFR---KIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNMLAN 409 (435)
Q Consensus 346 ~vIlD~Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~ee~~~R~~~R~~~~~~~vp~~vi~~m~~~ 409 (435)
+++.+.|...++.++ .++.++..+ ...+++++..|-..+|.+.|...+||++|++++++-+.+
T Consensus 71 ~F~~ETtLS~~s~~~-~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~r 136 (187)
T COG4185 71 PFIAETTLSGPSILE-LIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRR 136 (187)
T ss_pred CcceEEeeccchHHH-HHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 999999988888777 477666533 233456677789999999999999999999999887654
No 34
>PRK14527 adenylate kinase; Provisional
Probab=99.12 E-value=8.9e-10 Score=101.72 Aligned_cols=140 Identities=24% Similarity=0.315 Sum_probs=82.1
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRA 340 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~a 340 (435)
++++|+++|+|||||||+|+.+++.++ +.+++.+++.+.....+. ........+... ....+..++...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~---~~~is~gd~~r~~~~~~~----~~~~~~~~~~~~g~~~p~~~~~~l~~~~ 77 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG---LKKLSTGDILRDHVARGT----ELGQRAKPIMEAGDLVPDELILALIRDE 77 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC---CCCCCccHHHHHHHhcCc----HHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 468999999999999999999999887 677888665443211111 011111111110 011122233333
Q ss_pred hcC--CCeEEEeCCCcCHHHHHHHHHHHhcCC-c-EEEEEECCh-HHHHHHHHHhhhhcC-CCCcHHHHHHHHhccc
Q 013831 341 SRT--PRNFIIDQTNVFKSARKRKLRLFVNFR-K-IAVVVFPKP-EDLKIRSVKRFKEMG-KEVPADAVNNMLANYV 411 (435)
Q Consensus 341 l~~--g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~-~~vv~l~~~-ee~~~R~~~R~~~~~-~~vp~~vi~~m~~~fe 411 (435)
+.+ +..+|||...-+..++..+-..+...+ . ..+++++++ +++++|+..|....+ .+..++++.+..+.|.
T Consensus 78 l~~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~ 154 (191)
T PRK14527 78 LAGMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYR 154 (191)
T ss_pred HhcCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHH
Confidence 332 457999986666777664333444443 3 356788887 899999999853322 2334666666555543
No 35
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.10 E-value=1.3e-09 Score=98.12 Aligned_cols=126 Identities=13% Similarity=0.164 Sum_probs=80.6
Q ss_pred EccCCCChhHHHHHHHhhCCCccEEEeccHHHH-----HHhccCCCccCCCChH--HHHHHHHHHHHHHHHHHHHHhcCC
Q 013831 272 VGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL-----EQMKVPGLLRKHNYSE--RFQCLMGRANAIFDVLLSRASRTP 344 (435)
Q Consensus 272 ~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir-----~~~~~~G~~~~~~~~~--~~~~~~~~~~~~~~~ll~~al~~g 344 (435)
+|+|||||||+++.++..++ .+.|+.|.+. .++ ..|. .++. .+....... .. ....+...+
T Consensus 1 ~G~sGsGKSTla~~la~~l~---~~~~~~d~~~~~~~~~~~-~~g~----~~~~~~~~~~~~~~~-~~---~~~~~~~~~ 68 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLH---AAFLDGDFLHPRRNIEKM-ASGE----PLNDDDRKPWLQALN-DA---AFAMQRTNK 68 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhC---CeEEeCccCCchhhhccc-cCCC----CCChhhHHHHHHHHH-HH---HHHHHHcCC
Confidence 59999999999999999986 5677777641 111 1232 1222 111111111 11 111122455
Q ss_pred CeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCCCC
Q 013831 345 RNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNKD 417 (435)
Q Consensus 345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~~~ 417 (435)
..||+ .|++.+.+|.. ++... .+.+|+|.++ +++.+|+..|.. +.-+.+++..+++.+++|...+
T Consensus 69 ~~viv-~s~~~~~~r~~----~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~---~~a~~~vl~~Q~~~~ep~~~~e 135 (163)
T PRK11545 69 VSLIV-CSALKKHYRDL----LREGNPNLSFIYLKGDFDVIESRLKARKG---HFFKTQMLVTQFETLQEPGADE 135 (163)
T ss_pred ceEEE-EecchHHHHHH----HHccCCCEEEEEEECCHHHHHHHHHhccC---CCCCHHHHHHHHHHcCCCCCCC
Confidence 56666 89997777653 33333 7889999987 899999999953 3357899999999999886533
No 36
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=1.7e-09 Score=93.82 Aligned_cols=127 Identities=19% Similarity=0.229 Sum_probs=92.9
Q ss_pred EccCCCChhHHHHHHHhhCCCccEEEeccHHH-----HHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 013831 272 VGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-----LEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN 346 (435)
Q Consensus 272 ~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i-----r~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~ 346 (435)
.|..||||||+++.++..+. +..+..|++ +++|. .|.+- +...+|-++.... ..+....+.+..
T Consensus 1 MGVsG~GKStvg~~lA~~lg---~~fidGDdlHp~aNi~KM~-~GiPL--~DdDR~pWL~~l~-----~~~~~~~~~~~~ 69 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLG---AKFIDGDDLHPPANIEKMS-AGIPL--NDDDRWPWLEALG-----DAAASLAQKNKH 69 (161)
T ss_pred CCCCccCHHHHHHHHHHHcC---CceecccccCCHHHHHHHh-CCCCC--CcchhhHHHHHHH-----HHHHHhhcCCCc
Confidence 48999999999999999987 445555543 56775 45321 2345555554322 123333467777
Q ss_pred EEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCC
Q 013831 347 FIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVN 415 (435)
Q Consensus 347 vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~ 415 (435)
+||-.+-+.+++|+. ++... ..+.+||+..+ +.+++|.+.|. +|..|.+.++.+++.+|.|..
T Consensus 70 ~vi~CSALKr~YRD~-LR~~~--~~~~Fv~L~g~~~~i~~Rm~~R~---gHFM~~~ll~SQfa~LE~P~~ 133 (161)
T COG3265 70 VVIACSALKRSYRDL-LREAN--PGLRFVYLDGDFDLILERMKARK---GHFMPASLLDSQFATLEEPGA 133 (161)
T ss_pred eEEecHHHHHHHHHH-HhccC--CCeEEEEecCCHHHHHHHHHhcc---cCCCCHHHHHHHHHHhcCCCC
Confidence 888888899998886 33222 26899999886 89999999994 899999999999999999975
No 37
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.08 E-value=1.3e-09 Score=98.98 Aligned_cols=121 Identities=23% Similarity=0.308 Sum_probs=75.0
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCcc---CCCCh---HHHHHHHHHHHHHHHHHHHHH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLR---KHNYS---ERFQCLMGRANAIFDVLLSRA 340 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~---~~~~~---~~~~~~~~~~~~~~~~ll~~a 340 (435)
++|+|-|.|.|||||+|+.|...++. .|++++.|.+++.|. .+... ...+. +............+...+...
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~-p~~~l~~D~f~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~ 79 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPE-PWLHLSVDTFVDMMP-PGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAM 79 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS--EEEEEHHHHHHHS--GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcC-CeEEEecChHHhhcC-cccccCCccccccccCCchhHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999874 589999999988653 11100 00011 001122233333455566677
Q ss_pred hcCCCeEEEeCCCcCHHHHHHHH-HHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 013831 341 SRTPRNFIIDQTNVFKSARKRKL-RLFVNFRKIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 341 l~~g~~vIlD~Tn~~~~~R~~~~-~~~~~~~~~~vv~l~~~-ee~~~R~~~R 390 (435)
++.|.+||+|.....+..-...+ +.+..+ ++.+|-+.+| +++.+|...|
T Consensus 80 a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~-~vl~VgV~Cpleil~~RE~~R 130 (174)
T PF07931_consen 80 ARAGNNVIVDDVFLGPRWLQDCLRRLLAGL-PVLFVGVRCPLEILERRERAR 130 (174)
T ss_dssp HHTT-EEEEEE--TTTHHHHHHHHHHHTTS--EEEEEEE--HHHHHHHHHHH
T ss_pred HhCCCCEEEecCccCcHHHHHHHHHHhCCC-ceEEEEEECCHHHHHHHHHhc
Confidence 79999999999888776522334 445544 6777666666 8999999999
No 38
>PRK14531 adenylate kinase; Provisional
Probab=99.07 E-value=2.2e-09 Score=98.50 Aligned_cols=132 Identities=20% Similarity=0.293 Sum_probs=77.2
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEecc-HHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhc
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR 342 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~-D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~ 342 (435)
-|+++|+|||||||+++.+++.++ +.+||. |.+|.++. .+. ........++.. ....+..++...+.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g---~~~is~gd~lr~~~~-~~~----~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~ 75 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHG---LRHLSTGDLLRSEVA-AGS----ALGQEAEAVMNRGELVSDALVLAIVESQLK 75 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CCeEecccHHHHHHh-cCC----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 488899999999999999999987 667887 55555542 111 011110111000 00111122222222
Q ss_pred --CCCeEEEeCCCcCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcc
Q 013831 343 --TPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANY 410 (435)
Q Consensus 343 --~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~f 410 (435)
.+..+|||....+..++..+-..+...+ .+ .+++++++ +++.+|+..|.+ .+-.++++.+-.+.|
T Consensus 76 ~~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r---~dD~~e~i~~Rl~~y 145 (183)
T PRK14531 76 ALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGR---ADDNEAVIRNRLEVY 145 (183)
T ss_pred hccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCC---CCCCHHHHHHHHHHH
Confidence 3567999999888887775443444443 33 46788887 889999998842 233455554444443
No 39
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.06 E-value=3.5e-09 Score=96.69 Aligned_cols=133 Identities=15% Similarity=0.196 Sum_probs=84.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH-----HHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL-----EQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA 340 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir-----~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 340 (435)
.++++++|++||||||+++.++..+. ...++.|.+. +++. .|..........|-..+. .....++
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~---~~~i~gd~~~~~~~~r~~~-~g~~~~~~~~~~~~~~~~---~~~~~~~--- 72 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS---AKFIDGDDLHPAKNIDKMS-QGIPLTDEDRLPWLERLN---DASYSLY--- 72 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC---CEEECCcccCCHhHHHHHh-cCCCCCcccchHHHHHHH---HHHHHHH---
Confidence 46899999999999999999998876 3567766531 1221 222100000001211111 1111121
Q ss_pred hcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCCCC
Q 013831 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPVNK 416 (435)
Q Consensus 341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~~~ 416 (435)
......+|+ +|++.+..|... .+.. .+.+|+|+++ +++++|+.+|. ++..+.+++..+++.+++|...
T Consensus 73 ~~~~~g~iv-~s~~~~~~R~~~----r~~~~~~~~v~l~a~~~~l~~Rl~~R~---~~~~~~~vl~~Q~~~~e~~~~~ 142 (176)
T PRK09825 73 KKNETGFIV-CSSLKKQYRDIL----RKSSPNVHFLWLDGDYETILARMQRRA---GHFMPPDLLQSQFDALERPCAD 142 (176)
T ss_pred hcCCCEEEE-EEecCHHHHHHH----HhhCCCEEEEEEeCCHHHHHHHHhccc---CCCCCHHHHHHHHHHcCCCCCC
Confidence 112334455 888988777742 3333 6889999987 89999999994 4668999999999999988653
No 40
>PRK14532 adenylate kinase; Provisional
Probab=99.05 E-value=3e-09 Score=97.80 Aligned_cols=114 Identities=25% Similarity=0.320 Sum_probs=71.2
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH-hccCCCccCCCChHHHHHHH--------HHHHHHHHHHHHH
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ-MKVPGLLRKHNYSERFQCLM--------GRANAIFDVLLSR 339 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~-~~~~G~~~~~~~~~~~~~~~--------~~~~~~~~~ll~~ 339 (435)
|+|+|+|||||||+|+++++.++ +.+|++|+++++ +. .|.. .......+. +.....+...+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g---~~~is~~d~lr~~~~-~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~- 73 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG---MVQLSTGDMLRAAIA-SGSE----LGQRVKGIMDRGELVSDEIVIALIEERLP- 73 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CeEEeCcHHHHHHHH-cCCH----HHHHHHHHHHCCCccCHHHHHHHHHHHHh-
Confidence 78899999999999999999987 788898655443 32 1210 000000100 111111222221
Q ss_pred HhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHhh
Q 013831 340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 340 al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~~-ee~~~R~~~R~ 391 (435)
....+..+|||...-+..++..+.+.+...+ .. .+++|+.| +++.+|+..|.
T Consensus 74 ~~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~ 128 (188)
T PRK14532 74 EAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRF 128 (188)
T ss_pred CcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCc
Confidence 1235778999998888888776444554443 33 57788887 78999999884
No 41
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.03 E-value=2.9e-09 Score=96.81 Aligned_cols=111 Identities=18% Similarity=0.254 Sum_probs=71.9
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCC--ccEEEeccHHHHHHhccCCCccCCCChH-HHHHHHHHHHHHHHHHHHHHh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRAS 341 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls~D~ir~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~ll~~al 341 (435)
..++|+|+|+|||||||+|+.++..+.. ..+..++.|.++..+. .+. .+.. ..+....... .+.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~-~~~----~~~~~~r~~~~~~~~----~~a~~~~ 73 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLS-KGL----GFSKEDRDTNIRRIG----FVANLLT 73 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHh-cCC----CCChhhHHHHHHHHH----HHHHHHH
Confidence 4689999999999999999999887632 2366789998876653 121 1111 1111111111 1222234
Q ss_pred cCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHH
Q 013831 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS 387 (435)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~ 387 (435)
..|.+||+|+++.....|+. ++... ..+.+|+++++ +++.+|+
T Consensus 74 ~~g~~vi~~~~~~~~~~~~~-l~~~~--~~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 74 RHGVIVLVSAISPYRETREE-VRANI--GNFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred hCCCEEEEecCCCCHHHHHH-HHhhc--CCeEEEEEcCCHHHHHHhC
Confidence 67999999999887766664 32222 25778999987 8888885
No 42
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=99.01 E-value=6.6e-09 Score=106.70 Aligned_cols=125 Identities=10% Similarity=0.122 Sum_probs=86.1
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhcc--CCCccCCCC---hHHH----------------
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV--PGLLRKHNY---SERF---------------- 322 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~--~G~~~~~~~---~~~~---------------- 322 (435)
+.+.+|+++|+||+||||+|.+++..++- ..+|++|.+|+.|+- ........+ -..|
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~--~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~ 330 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGI--TRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTR 330 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCC--cEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccch
Confidence 35899999999999999999999999873 237899999886641 111000000 0011
Q ss_pred ----HHHHHHHHHH---HHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-c-E-EEEEECChHHHHHHHHHhhh
Q 013831 323 ----QCLMGRANAI---FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-K-I-AVVVFPKPEDLKIRSVKRFK 392 (435)
Q Consensus 323 ----~~~~~~~~~~---~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~-~-~vv~l~~~ee~~~R~~~R~~ 392 (435)
.-..++|... +..+++++++.|.+||||..|+.+..... ....+ . + .+++|++.+++++|...|.+
T Consensus 331 ~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~----~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~ 406 (475)
T PRK12337 331 AEVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRH----PYQAGALVVPMLVTLPDEALHRRRFELRDR 406 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHH----HHhcCCceEEEEEEECCHHHHHHHHHHHhh
Confidence 1122344444 77889999999999999999999987653 11222 2 2 34677878999999999976
Q ss_pred hc
Q 013831 393 EM 394 (435)
Q Consensus 393 ~~ 394 (435)
..
T Consensus 407 ~~ 408 (475)
T PRK12337 407 ET 408 (475)
T ss_pred hc
Confidence 43
No 43
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.98 E-value=5e-09 Score=111.90 Aligned_cols=115 Identities=16% Similarity=0.209 Sum_probs=82.1
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCC---ccEEEeccHHHHHHhccCCCccCCCChHH-HHHHHHHHHHHHHHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE---KRYILLGTNLILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSRA 340 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~---~~~~~ls~D~ir~~~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~ll~~a 340 (435)
...+|+|+|+|||||||+|+.+++.+.. ..+..++.|.+|..|. |. ..|... .+.....+ ..+....
T Consensus 391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~--ge---~~f~~~er~~~~~~l----~~~a~~v 461 (568)
T PRK05537 391 QGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLS--SE---LGFSKEDRDLNILRI----GFVASEI 461 (568)
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhcc--CC---CCCCHHHHHHHHHHH----HHHHHHH
Confidence 4679999999999999999999988752 1257889999877653 32 234332 12222211 1123344
Q ss_pred hcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH
Q 013831 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV 388 (435)
Q Consensus 341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~ 388 (435)
++.|..||+|.|+.....|....+.++..+.+.+|+|+++ +++.+|+.
T Consensus 462 ~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~r 510 (568)
T PRK05537 462 TKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDR 510 (568)
T ss_pred HhCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhcc
Confidence 6889999999999999999987777766555677899987 88988863
No 44
>PLN02200 adenylate kinase family protein
Probab=98.97 E-value=1.3e-08 Score=97.09 Aligned_cols=119 Identities=18% Similarity=0.229 Sum_probs=69.9
Q ss_pred CCCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH-HHHHHhccCCCccCCCChHHHHHHH--------HHHHHH
Q 013831 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN-LILEQMKVPGLLRKHNYSERFQCLM--------GRANAI 332 (435)
Q Consensus 262 ~~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D-~ir~~~~~~G~~~~~~~~~~~~~~~--------~~~~~~ 332 (435)
..+.+.+|+++|+|||||||+|+++++.++ +.+|+.+ .+|+.+.. .. .......... +.....
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g---~~his~gdllR~~i~~-~s----~~~~~i~~~~~~G~~vp~e~~~~~ 110 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFG---FKHLSAGDLLRREIAS-NS----EHGAMILNTIKEGKIVPSEVTVKL 110 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhC---CeEEEccHHHHHHHhc-cC----hhHHHHHHHHHcCCCCcHHHHHHH
Confidence 345578999999999999999999999887 6778884 45554421 10 0000000000 111111
Q ss_pred HHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831 333 FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 333 ~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
+...+.. ..+..+|||....+..++.. +..+.+...-.+++++++ +++++|+..|.
T Consensus 111 l~~~l~~--~~~~~~ILDG~Prt~~q~~~-l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~ 167 (234)
T PLN02200 111 IQKEMES--SDNNKFLIDGFPRTEENRIA-FERIIGAEPNVVLFFDCPEEEMVKRVLNRN 167 (234)
T ss_pred HHHHHhc--CCCCeEEecCCcccHHHHHH-HHHHhccCCCEEEEEECCHHHHHHHHHcCc
Confidence 2222211 23467999997666555543 333333223356778876 88999999884
No 45
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.97 E-value=1.3e-08 Score=93.01 Aligned_cols=115 Identities=24% Similarity=0.336 Sum_probs=69.0
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH-hccCCCccCCCChHHHHHHH--------HHHHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ-MKVPGLLRKHNYSERFQCLM--------GRANAIFDV 335 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~-~~~~G~~~~~~~~~~~~~~~--------~~~~~~~~~ 335 (435)
++.+|+++|+|||||||+|+.+++.++ +.+++++++.++ +. .+.. ......... ......+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g---~~~~~~g~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~ 73 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYG---FTHLSTGDLLRAEVA-SGSE----RGKQLQAIMESGDLVPLDTVLDLLKD 73 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHHHh-cCCH----HHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 468999999999999999999999886 667888665433 21 1110 000000000 011122222
Q ss_pred HHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhc-CC-cEEEEEECCh-HHHHHHHHHhh
Q 013831 336 LLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FR-KIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 336 ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~-~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
.+..++..+..||+|...-+..+.. .+.. .. ...+++++++ +.+.+|+..|.
T Consensus 74 ~~~~~~~~~~~~i~dg~~~~~~q~~----~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 128 (188)
T TIGR01360 74 AMVAALGTSKGFLIDGYPREVKQGE----EFERRIGPPTLVLYFDCSEDTMVKRLLKRA 128 (188)
T ss_pred HHHcccCcCCeEEEeCCCCCHHHHH----HHHHcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 3333456788999999754433222 2322 22 3457788887 88999999885
No 46
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.96 E-value=1.3e-08 Score=91.00 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=78.3
Q ss_pred CCcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCCh--HHHHHHHHHHHHHHHHHHH
Q 013831 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYS--ERFQCLMGRANAIFDVLLS 338 (435)
Q Consensus 263 ~~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~--~~~~~~~~~~~~~~~~ll~ 338 (435)
.+.+.+|++.||+||||||+|..+.+.+. +....+|.-|.+|.-+. ++..|. ++.+.+...+ ....
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~-----~dLgFs~edR~eniRRva-----evAk 89 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLN-----RDLGFSREDRIENIRRVA-----EVAK 89 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhccc-----CCCCCChHHHHHHHHHHH-----HHHH
Confidence 34568999999999999999999987754 23467899999886543 222332 2223222222 1233
Q ss_pred HHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHH
Q 013831 339 RASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS 387 (435)
Q Consensus 339 ~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~ 387 (435)
...++|-.||+-....+++.|+..-+.+.. +++.-||+++| ++|.+|.
T Consensus 90 ll~daG~iviva~ISP~r~~R~~aR~~~~~-~~FiEVyV~~pl~vce~RD 138 (197)
T COG0529 90 LLADAGLIVIVAFISPYREDRQMARELLGE-GEFIEVYVDTPLEVCERRD 138 (197)
T ss_pred HHHHCCeEEEEEeeCccHHHHHHHHHHhCc-CceEEEEeCCCHHHHHhcC
Confidence 345889999999988888888864333333 35666899998 9999885
No 47
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.95 E-value=7.5e-09 Score=112.50 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=77.8
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChHH-HHHHHHHHHHHHHHHHHHHh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSRAS 341 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~ll~~al 341 (435)
.+.+|+|+|+|||||||+|+.+++.+. +..++.|+.|.+|..+. +. ..|.+. ....++.+ ..+....+
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~--~~---~~~~~~~r~~~~~~l----~~~a~~~~ 529 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLN--RD---LGFSDADRVENIRRV----AEVARLMA 529 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccC--CC---CCCCHHHHHHHHHHH----HHHHHHHH
Confidence 478999999999999999999988752 23478899999886542 21 123322 12222221 12333445
Q ss_pred cCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHH
Q 013831 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS 387 (435)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~ 387 (435)
++|.+||+|+++..+..|.. ++.+.....+.+|+|+++ +++++|+
T Consensus 530 ~~G~~Vivda~~~~~~~R~~-~r~l~~~~~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 530 DAGLIVLVSFISPFREEREL-ARALHGEGEFVEVFVDTPLEVCEARD 575 (632)
T ss_pred hCCCEEEEECCCCCHHHHHH-HHHhcccCCeEEEEECCCHHHHHhhC
Confidence 88999999999999999875 443332225788999987 8888885
No 48
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=98.94 E-value=1.6e-09 Score=97.77 Aligned_cols=143 Identities=15% Similarity=0.278 Sum_probs=92.1
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCc---cEEEeccHHHH-HHhccCCCccCCCCh---HHHHHHHHHHHHHHHH----
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEK---RYILLGTNLIL-EQMKVPGLLRKHNYS---ERFQCLMGRANAIFDV---- 335 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~---~~~~ls~D~ir-~~~~~~G~~~~~~~~---~~~~~~~~~~~~~~~~---- 335 (435)
.++.++|+|+||||||.+.+...+... ..++++.|+++ ++.. .. +..+. .+++..++.+-....+
T Consensus 2 ~LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTp-Sa---D~a~keqRgr~~~~iEk~ISaiqedtdw 77 (291)
T KOG4622|consen 2 ALLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATP-SA---DKAAKEQRGRFECHIEKCISAIQEDTDW 77 (291)
T ss_pred ceeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCc-ch---hhhHHHHhchHHHHHHHHHHHHhcccCC
Confidence 367899999999999999987665432 24566777765 2211 11 11121 1223333322111000
Q ss_pred --HHHHHh-----cC-CCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHH
Q 013831 336 --LLSRAS-----RT-PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNN 405 (435)
Q Consensus 336 --ll~~al-----~~-g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~ 405 (435)
.+.+.. .. ...+++|+.++.+++|.++.+.++..+ .+-+||+.+. .+++++|..|. +...++.+++++
T Consensus 78 ppqvrrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaNS~Rs--da~k~~~dtiRk 155 (291)
T KOG4622|consen 78 PPQVRRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQANSHRS--DAEKQKNDTIRK 155 (291)
T ss_pred CchheeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhccccc--cchhCccHHHHH
Confidence 000111 12 347888999999999998666666666 5677888775 89999999994 345789999999
Q ss_pred HHhcccCCCC
Q 013831 406 MLANYVLPVN 415 (435)
Q Consensus 406 m~~~fe~P~~ 415 (435)
|.+++|.|..
T Consensus 156 i~EklE~PD~ 165 (291)
T KOG4622|consen 156 IFEKLEDPDE 165 (291)
T ss_pred HHHhccCccH
Confidence 9999999964
No 49
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.93 E-value=2.8e-08 Score=91.39 Aligned_cols=116 Identities=22% Similarity=0.220 Sum_probs=69.3
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhc--
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR-- 342 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~-- 342 (435)
|+++|+|||||||+|+.+++.++ +.+|+.|++.++..-.+. ............ -...+..++..++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~---~~~i~~~~l~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~ 74 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG---LPHISTGDLLREEIASGT----ELGKKAKEYIDSGKLVPDEIVIKLLKERLKKP 74 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CeEEECcHHHHHHHhcCC----hHHHHHHHHHHcCCccCHHHHHHHHHHHHhcc
Confidence 78999999999999999999986 678888766443210110 001100011100 00122234444443
Q ss_pred -CCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhh
Q 013831 343 -TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 343 -~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
.++.+|||....+..+...+.+.+.... ...+|++.++ +++++|+..|.
T Consensus 75 ~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~ 126 (194)
T cd01428 75 DCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRR 126 (194)
T ss_pred cccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 3678999997666665554333333222 4456788887 88999999985
No 50
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.91 E-value=1.9e-08 Score=91.52 Aligned_cols=113 Identities=21% Similarity=0.153 Sum_probs=69.0
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~ 342 (435)
.+.+|+++|+|||||||+|+.++..+. ...++.++.|.+++.+...| +......+. +. ....+.+...+
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~----~~~~~~~~~----~~-~~~~l~~~l~~ 76 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYG----YDKQSRIEM----AL-KRAKLAKFLAD 76 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCC----CCHHHHHHH----HH-HHHHHHHHHHh
Confidence 467999999999999999999987764 12366778888876543222 111111111 11 11112222346
Q ss_pred CCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHH
Q 013831 343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK 389 (435)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~ 389 (435)
.|.+||+|.++.....+.. .+... ....+|+|+++ +++.+|+.+
T Consensus 77 ~g~~VI~~~~~~~~~~~~~-~~~~~--~~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 77 QGMIVIVTTISMFDEIYAY-NRKHL--PNYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred CCCEEEEEeCCcHHHHHHH-HHhhc--CCeEEEEEeCCHHHHHHhchh
Confidence 8899999999875444432 22111 13457888876 899999754
No 51
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.91 E-value=2.3e-08 Score=109.15 Aligned_cols=144 Identities=22% Similarity=0.169 Sum_probs=90.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCcc-CCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLR-KHNYSERFQCLMGRANAIFDVLLSRASR 342 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~-~~~~~~~~~~~~~~~~~~~~~ll~~al~ 342 (435)
..+++|+|+||+||||+|++|++.+. +-...+++.+.+++++.-.+... ........ ..+.+..+++.+....+.
T Consensus 215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~--e~~~~~~~~~d~~~~v~~ 292 (664)
T PTZ00322 215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEV--EFRIAKAIAHDMTTFICK 292 (664)
T ss_pred ceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHH--HHHHHHHHHHHHHHHHhc
Confidence 56899999999999999999998863 11245666788887763111100 11111111 112233333334445566
Q ss_pred CCCeEEEeCCCcCHHHHHHHHHHHhcCCc---EEEEEEC---ChHHHHHHHHHhhhhcCCCCcHHHHHHHHhccc
Q 013831 343 TPRNFIIDQTNVFKSARKRKLRLFVNFRK---IAVVVFP---KPEDLKIRSVKRFKEMGKEVPADAVNNMLANYV 411 (435)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~---~~vv~l~---~~ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe 411 (435)
.|..+|+|+||.+...|..+++.+++.+. ..+|+++ ++++.+++|..|........+++++.++++.++
T Consensus 293 ~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~~~~~~e~~~~~~~~~~~ 367 (664)
T PTZ00322 293 TDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEMFPGAPEDFVDRYYEVIE 367 (664)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 78899999999999999888888886431 2344443 346667888877554444456677777776665
No 52
>PRK01184 hypothetical protein; Provisional
Probab=98.87 E-value=5.7e-08 Score=88.92 Aligned_cols=119 Identities=18% Similarity=0.157 Sum_probs=64.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc-HHHHHHhccCCCcc-CCCChHHHHHHHHH-HHHHHHHHHHHHh-
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQMKVPGLLR-KHNYSERFQCLMGR-ANAIFDVLLSRAS- 341 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~-D~ir~~~~~~G~~~-~~~~~~~~~~~~~~-~~~~~~~ll~~al- 341 (435)
+.+|+|+|+|||||||+++ ++++++ +.++++ |.+|+.+...+... ...+...-....+. ....+..++...+
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~g---~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~ 76 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREMG---IPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIR 76 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHcC---CcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 3589999999999999987 677765 667776 55566542122110 00011100011111 0011111111112
Q ss_pred -cCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831 342 -RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 342 -~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
..+..||+|.+ ....+... ++.... ....+|++.++ +++.+|+..|.
T Consensus 77 ~~~~~~vvidg~-r~~~e~~~-~~~~~~-~~~~~i~v~~~~~~~~~Rl~~R~ 125 (184)
T PRK01184 77 EKGDEVVVIDGV-RGDAEVEY-FRKEFP-EDFILIAIHAPPEVRFERLKKRG 125 (184)
T ss_pred hcCCCcEEEeCC-CCHHHHHH-HHHhCC-cccEEEEEECCHHHHHHHHHHcC
Confidence 24678999997 44444432 222211 14567788887 88999999884
No 53
>PRK12338 hypothetical protein; Provisional
Probab=98.85 E-value=4.5e-08 Score=96.73 Aligned_cols=123 Identities=19% Similarity=0.218 Sum_probs=79.2
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccC-CC-c----cCCCChHHHH---------------
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVP-GL-L----RKHNYSERFQ--------------- 323 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~-G~-~----~~~~~~~~~~--------------- 323 (435)
.+.+|+++|+|||||||+|+.++..++- ..++++|.+|+.++-. +. + ....| ..|.
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~--~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy-~a~~~l~~~~~~~~~~~~i 79 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNI--KHLIETDFIREVVRGIIGKEYAPALHKSSY-NAYTALRDKENFKNNEELI 79 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCC--eEEccChHHHHHHcCCCCcccCchhhcccH-HHHhhcCCcccccchHHHH
Confidence 3679999999999999999999999873 2345889998876521 11 0 00011 1121
Q ss_pred --HH---HHHHHHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECC-hHHHHHHHHHhhh
Q 013831 324 --CL---MGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK-PEDLKIRSVKRFK 392 (435)
Q Consensus 324 --~~---~~~~~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~-~ee~~~R~~~R~~ 392 (435)
-. .+.+...+..+++++++.|.++||+..++.+..... ..+.....+.++++.+ .++.++|...|.+
T Consensus 80 ~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~--~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~ 152 (319)
T PRK12338 80 CAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDI--EQFEENASIHFFILSADEEVHKERFVKRAM 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhh--hhhcccCceEEEEEECCHHHHHHHHHHhhh
Confidence 01 122333455677888899999999999999876553 1111212455444434 4889999999864
No 54
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.81 E-value=5.6e-08 Score=90.31 Aligned_cols=113 Identities=15% Similarity=0.084 Sum_probs=74.1
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~ 342 (435)
.+.+|.|+|+|||||||+|+.+...+. +...+.|+.|.++..+. +.. .+..... ...+.. +..+....+.
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~--~~~-~~~~~~~-~~~~~~----l~~~a~~~~~ 94 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLC--SDL-GFSDADR-KENIRR----VGEVAKLMVD 94 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhh--hcC-CcCcccH-HHHHHH----HHHHHHHHhh
Confidence 478999999999999999999988653 22367888888775532 110 1111111 111111 2223344567
Q ss_pred CCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHH
Q 013831 343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIR 386 (435)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R 386 (435)
.|.+||.+..+..+++|..+...+... .+.+|+|+++ +++.+|
T Consensus 95 ~G~~VI~~~~~~~~~~R~~~r~~l~~~-~~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 95 AGLVVLTAFISPHRAERQMVRERLGEG-EFIEVFVDTPLAICEAR 138 (198)
T ss_pred CCCEEEEEeCCCCHHHHHHHHHHcccC-CEEEEEEcCCHHHHHhc
Confidence 899999888888889998755554432 4667899987 888888
No 55
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.80 E-value=7.5e-08 Score=90.57 Aligned_cols=115 Identities=19% Similarity=0.226 Sum_probs=66.4
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH-HHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhc-
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR- 342 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i-r~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~- 342 (435)
|+++|+|||||||+|+.+++.++ +.+|+.+++ ++.+. .+. ........+... -...+..++...+.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~---~~~is~~dl~r~~~~-~~~----~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~ 74 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYG---IPHISTGDMLRAAVK-AGT----ELGKEAKSYMDAGELVPDEIVIGLVKERLAQ 74 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CcEEECCccHHHHHh-ccc----hHHHHHHHHHHcCCcCCHHHHHHHHHHHHhc
Confidence 78899999999999999999987 678887554 44332 111 001100001000 00111223322222
Q ss_pred --CCCeEEEeCCCcCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHhh
Q 013831 343 --TPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 343 --~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~~-ee~~~R~~~R~ 391 (435)
.+..+|||...-+..+...+-+.+...+ .. .+|+|+++ +++++|+..|.
T Consensus 75 ~~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 128 (215)
T PRK00279 75 PDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRR 128 (215)
T ss_pred cCccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCc
Confidence 2347999996555555443323334443 33 57788887 78999999984
No 56
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]
Probab=98.78 E-value=1.4e-08 Score=105.21 Aligned_cols=159 Identities=21% Similarity=0.194 Sum_probs=116.8
Q ss_pred eEEeCcCCCCC-CeEEcCCCceEeecCCCCcccceeeEeecceee--CCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEE
Q 013831 43 RVVLNPADCDL-DFDIEDNGLKSSGLHQEGFAYCWSGARANVGIN--GGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGT 119 (435)
Q Consensus 43 ~v~l~~~d~~~-~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~--~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~ 119 (435)
..+||+.+..- ..+++.|...+...........-+.+-|+..+. .|.||||+.|.+.+ ..+.+.||.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~gi~f~~~~~~~~~dvg~~~~~~~~~~N~~~~~Fe~~i~d~g----------~~~~i~i~~ 100 (469)
T KOG1477|consen 31 PCEVNTINGSDFFTKNGPDMGIAFYTPPALLYHDVGVVQAGEPLPANFGIYYFEFDILDYG----------IEGRIKIGF 100 (469)
T ss_pred cceEeccCCceeEEEEcCCcceeeecCccccCCCcceeeCCCCCCcccccceeeeeHHHhh----------hhhceEEEE
Confidence 67899877644 455666666554433333344556666666666 47999999999653 468899999
Q ss_pred ecCCCC-CCCCCCCCcceEEec-CCceEeCC--CcccCCCCCCCCCEEEEEEecCCCCceeEEEEeCccceeecccccCC
Q 013831 120 SRGDDP-VGKLGETEQSFGFGG-TGKFSHGG--NFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAG 195 (435)
Q Consensus 120 s~~~~~-~~~lG~d~~S~gy~~-~G~~~~~~--~~~~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~lg~af~~~~~ 195 (435)
...... ....|+..+||+|++ +|.+.+.+ ....|+++|+.||.|||.++... .+|+|++||..+|.+++.
T Consensus 101 ~~~~~~~~~~~g~~~~s~~y~g~~g~l~~~~~~~~~~~~~~~~~~D~ig~~~~~~~---q~i~~t~~g~~~~~~~~~--- 174 (469)
T KOG1477|consen 101 LIDSFSIIESEGYTMNSLGYHGNSGLLDNGGAELGEEFGPTFTTGDEIGCGINEIT---QEIFFTKNGTEVGEIIKP--- 174 (469)
T ss_pred EecccccccccchhhhhhcccCCchhhhhhhhhhchhhcCCCCccceeeeccchhh---heeeeccCcccccccccc---
Confidence 886554 678899999999986 46665523 34689999999999999999987 699999999999999862
Q ss_pred CCCccccccccccccCCCceeeE----EEE-c-CeEEEEEccC
Q 013831 196 SNGLGVVDSAVKERQCESAVFPH----ILL-K-NVVVVMQFSV 232 (435)
Q Consensus 196 ~~~l~~~~~~~~g~~~~~~lfP~----v~l-~-~~~v~~nFG~ 232 (435)
+ ...++|. +.+ . +..|.+|||.
T Consensus 175 ~---------------~~~~~~~~~n~~~~~s~~~~I~~~~g~ 202 (469)
T KOG1477|consen 175 L---------------SPDLLEENGNLAWLFSPNEEVEVNFGL 202 (469)
T ss_pred c---------------cccccccccceeeEeccCceeeeeecC
Confidence 1 2234444 444 3 8999999994
No 57
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=98.77 E-value=8.1e-09 Score=101.94 Aligned_cols=133 Identities=23% Similarity=0.220 Sum_probs=94.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~ 345 (435)
.++|+|+|.|||||||+++.+...+. +.+++.|. .|. |+.+...+ ..++..+.
T Consensus 269 ~eiV~~vgfp~sGks~f~a~~~~~~~---y~~vn~d~-------lg~---------~~~C~~~~--------~e~l~~~~ 321 (422)
T KOG2134|consen 269 GEIVVAVGFPGSGKSTFAAKRVVPNG---YKIVNADT-------LGT---------PQNCLLAN--------AEALKHGK 321 (422)
T ss_pred CcEEEEEecCCCCcchhhhhhcccCc---eeEeeccc-------CCC---------chhhHHHH--------HHHhhccc
Confidence 49999999999999999999988776 78887764 233 23333322 34568999
Q ss_pred eEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcC--CCCcHHHHHHHHhcccCCCCCCCCCC
Q 013831 346 NFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMG--KEVPADAVNNMLANYVLPVNKDTPGS 421 (435)
Q Consensus 346 ~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~--~~vp~~vi~~m~~~fe~P~~~~~~~~ 421 (435)
.||+|+||.+...|+.++....... .+..+.+.++ +..+.-+..|..... ..+++-++..++.+|+.|++
T Consensus 322 sVvidnt~pd~~sr~~~~~~a~e~~~p~rcf~~~~s~eq~~hn~~fR~~~~~~~~~~~dm~~~~~k~kf~~ptl------ 395 (422)
T KOG2134|consen 322 SVVIDNTNPDAESRKYYLDCATEREIPIRCFEMNSSVEQAQHNNRFRELSDSVKDSGSDMVFNSEKSKFQKPTL------ 395 (422)
T ss_pred EEeeCCCCcchHHHHHHhhhHHHhCccceeeeeccHHHhhhccccchhhccchhcccccceeehhhccccCchH------
Confidence 9999999999999998766555543 3444444555 444445555654332 24556777778899999997
Q ss_pred Ccccceeccc
Q 013831 422 DELFDQRRGS 431 (435)
Q Consensus 422 ~e~Fd~i~~~ 431 (435)
+|+|..|.-.
T Consensus 396 ~egft~i~ev 405 (422)
T KOG2134|consen 396 DEGFTNILEV 405 (422)
T ss_pred hhhhhhhhcc
Confidence 8888887654
No 58
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.76 E-value=8.9e-08 Score=89.74 Aligned_cols=114 Identities=22% Similarity=0.280 Sum_probs=65.7
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH-HHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhc-
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR- 342 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i-r~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~- 342 (435)
|+++|+|||||||+|+.+++.++ +.+|+++++ |+.+. .+. .....-..+.+. -...+..++...+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g---~~~is~gdllr~~~~-~~~----~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~ 73 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG---LPHISTGDLLRAEIK-AGT----PLGKKAKEYMEKGELVPDEIVNQLVKERLTQ 73 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CCeeehhHHHHHhhc-ccc----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 68899999999999999999887 678888554 44432 110 000000000000 00111223333322
Q ss_pred ---CCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831 343 ---TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 343 ---~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
.++.+|||...-+..+... +..........+|+|+.+ +.+++|+..|.
T Consensus 74 ~~~~~~~~ilDGfPrt~~Qa~~-l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 74 NQDNENGFILDGFPRTLSQAEA-LDALLKEKIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred CcccCCcEEEeCCCCCHHHHHH-HHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence 2678999996556555543 332221123457788887 78999999884
No 59
>PRK14530 adenylate kinase; Provisional
Probab=98.74 E-value=1.6e-07 Score=88.32 Aligned_cols=117 Identities=16% Similarity=0.165 Sum_probs=66.2
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH-hccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhc
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ-MKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR 342 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~-~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~ 342 (435)
.|+++|+|||||||+|+.+++.++ +.+|+++++.++ ...........+... ...... -......++..++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~---~~~i~~g~~lr~~~~~~~~~~~~~~~~~-~~~~~~g~~~~d~~~~~~l~~~l~ 80 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG---VEHVTTGDALRANKQMDISDMDTEYDTP-GEYMDAGELVPDAVVNEIVEEALS 80 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CeEEeccHHHHHhccCCcccccchHHHH-HHHHHcCCCCCHHHHHHHHHHHHh
Confidence 478899999999999999999987 667777665443 210000000001100 001100 01123344545555
Q ss_pred CCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831 343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
....+|||....+..+.. .++.+. ..-.+|+++.+ +.+++|+..|.
T Consensus 81 ~~~~~IldG~pr~~~q~~-~l~~~~--~~d~vI~Ld~~~~~l~~Rl~~R~ 127 (215)
T PRK14530 81 DADGFVLDGYPRNLEQAE-YLESIT--DLDVVLYLDVSEEELVDRLTGRR 127 (215)
T ss_pred cCCCEEEcCCCCCHHHHH-HHHHhc--CCCEEEEEeCCHHHHHHHHhCCC
Confidence 566899998444444333 233222 23347788887 88899998873
No 60
>PRK02496 adk adenylate kinase; Provisional
Probab=98.70 E-value=1.3e-07 Score=86.67 Aligned_cols=132 Identities=18% Similarity=0.149 Sum_probs=72.6
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHH--------HHHHHHHHHHHHHH
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLM--------GRANAIFDVLLSRA 340 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~--------~~~~~~~~~ll~~a 340 (435)
+++.|+|||||||+|+.+++.++ +.+++.+++.++....+. .....-.... +.....+...+..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~---~~~i~~~~~~~~~~~~~~----~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~- 75 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLH---IPHISTGDILRQAIKEQT----PLGIKAQGYMDKGELVPDQLVLDLVQERLQQ- 75 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CcEEEhHHHHHHHHhccC----hhHHHHHHHHHCCCccCHHHHHHHHHHHHhC-
Confidence 78899999999999999999886 567777665443211111 0000000000 0111111122211
Q ss_pred hcCCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhccc
Q 013831 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYV 411 (435)
Q Consensus 341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe 411 (435)
......+|||..--+..+...+-+.+...+ ...+++++.+ +.+.+|+..|.+ .+-+++.+++..+.|.
T Consensus 76 ~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~---~dd~~~~~~~r~~~y~ 146 (184)
T PRK02496 76 PDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGR---KDDTEEVIRRRLEVYR 146 (184)
T ss_pred cCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCC---CCCCHHHHHHHHHHHH
Confidence 123457999985444444332222233332 3456788876 889999999832 2345667776666554
No 61
>PRK00625 shikimate kinase; Provisional
Probab=98.69 E-value=2e-07 Score=84.85 Aligned_cols=36 Identities=22% Similarity=0.414 Sum_probs=30.7
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~ 306 (435)
.|+|+|.|||||||+++.+++.+. +..++.|.+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~---~~~id~D~~I~~ 37 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS---LPFFDTDDLIVS 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CCEEEhhHHHHH
Confidence 389999999999999999999886 667888876554
No 62
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.68 E-value=3.5e-07 Score=80.75 Aligned_cols=107 Identities=19% Similarity=0.200 Sum_probs=59.6
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChH-HHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRASRTPRNF 347 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~ll~~al~~g~~v 347 (435)
|+|+|+|||||||+|+.+++.++ +..++.|.++.+.. |..-...+.. .++...... .+++..++..+ ++
T Consensus 2 i~l~G~~GsGKstla~~la~~l~---~~~~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~e----~~~~~~~~~~~-~~ 71 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG---LPFVDLDELIEQRA--GMSIPEIFAEEGEEGFRELE----REVLLLLLTKE-NA 71 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC---CCEEEchHHHHHHc--CCCHHHHHHHHCHHHHHHHH----HHHHHHHhccC-Cc
Confidence 68999999999999999999986 66788888766542 2100000000 011111111 11333333444 44
Q ss_pred EEeCCC---cCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831 348 IIDQTN---VFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 348 IlD~Tn---~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
||+... ..... .+.+.. ...+||+.+| +++++|+.+|.
T Consensus 72 vi~~g~~~i~~~~~----~~~~~~--~~~~i~l~~~~e~~~~R~~~r~ 113 (154)
T cd00464 72 VIATGGGAVLREEN----RRLLLE--NGIVVWLDASPEELLERLARDK 113 (154)
T ss_pred EEECCCCccCcHHH----HHHHHc--CCeEEEEeCCHHHHHHHhccCC
Confidence 444322 22222 122222 3457788887 78889998874
No 63
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.68 E-value=1.5e-07 Score=85.20 Aligned_cols=134 Identities=16% Similarity=0.236 Sum_probs=79.7
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc--cCCCC--hHHHHHHHHH------HH----
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL--RKHNY--SERFQCLMGR------AN---- 330 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~--~~~~~--~~~~~~~~~~------~~---- 330 (435)
...+++++|++|+||||+++.|.+..+ . .++||... +..+ .|.. .+|.| ...++.++++ |.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l-~~SVS~TT--R~pR-~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gn 77 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK-L-RFSVSATT--RKPR-PGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGN 77 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC-e-EEEEEecc--CCCC-CCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCC
Confidence 367999999999999999999998873 2 44555443 2322 2321 12333 2334433322 00
Q ss_pred --HHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh--HHHHHHHHHhhhhcCCCCcHHHHHHH
Q 013831 331 --AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNNM 406 (435)
Q Consensus 331 --~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~--ee~~~R~~~R~~~~~~~vp~~vi~~m 406 (435)
-.....++.++..|++||+|-.-- ..++ .-..+.....||+.+| +++.+|+..| +.+..+.+-++|
T Consensus 78 yYGT~~~~ve~~~~~G~~vildId~q--Ga~q----vk~~~p~~v~IFi~pPs~eeL~~RL~~R----gtds~e~I~~Rl 147 (191)
T COG0194 78 YYGTSREPVEQALAEGKDVILDIDVQ--GALQ----VKKKMPNAVSIFILPPSLEELERRLKGR----GTDSEEVIARRL 147 (191)
T ss_pred cccCcHHHHHHHHhcCCeEEEEEehH--HHHH----HHHhCCCeEEEEEcCCCHHHHHHHHHcc----CCCCHHHHHHHH
Confidence 022345667789999999998622 1111 1123445555566443 8999999999 666666666666
Q ss_pred Hh-cccCC
Q 013831 407 LA-NYVLP 413 (435)
Q Consensus 407 ~~-~fe~P 413 (435)
.+ +-|+-
T Consensus 148 ~~a~~Ei~ 155 (191)
T COG0194 148 ENAKKEIS 155 (191)
T ss_pred HHHHHHHH
Confidence 43 34443
No 64
>PRK13946 shikimate kinase; Provisional
Probab=98.67 E-value=3.7e-07 Score=83.81 Aligned_cols=130 Identities=12% Similarity=0.108 Sum_probs=77.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHH--HHHHHHHHHHHHHHHHHHhcC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERF--QCLMGRANAIFDVLLSRASRT 343 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~--~~~~~~~~~~~~~ll~~al~~ 343 (435)
...|+|+|+|||||||+++.+++.++ +..+++|.++.++. |..-. .+...+ .... .....++..++..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg---~~~id~D~~~~~~~--g~~~~-e~~~~~ge~~~~----~~e~~~l~~l~~~ 79 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG---LPFLDADTEIERAA--RMTIA-EIFAAYGEPEFR----DLERRVIARLLKG 79 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC---CCeECcCHHHHHHh--CCCHH-HHHHHHCHHHHH----HHHHHHHHHHHhc
Confidence 45799999999999999999999986 56788898766542 32100 000111 1111 1122344444556
Q ss_pred CCeEEEeC--CCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhhhc--CCCCcHHHHHHHHhccc
Q 013831 344 PRNFIIDQ--TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEM--GKEVPADAVNNMLANYV 411 (435)
Q Consensus 344 g~~vIlD~--Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~~~--~~~vp~~vi~~m~~~fe 411 (435)
+..||... +.+.+..|+. + ... ..+|+|+.| +++.+|+..|.... ...-+.+.++++.++.+
T Consensus 80 ~~~Vi~~ggg~~~~~~~r~~-l---~~~--~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~ 146 (184)
T PRK13946 80 GPLVLATGGGAFMNEETRAA-I---AEK--GISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERY 146 (184)
T ss_pred CCeEEECCCCCcCCHHHHHH-H---HcC--CEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHH
Confidence 65666653 5666665553 2 222 245788887 88999998873210 01234577777766554
No 65
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.67 E-value=1.2e-07 Score=87.26 Aligned_cols=128 Identities=16% Similarity=0.331 Sum_probs=67.0
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc--cCCCC--hHHHHHHHHH-----------
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL--RKHNY--SERFQCLMGR----------- 328 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~--~~~~~--~~~~~~~~~~----------- 328 (435)
..+.+|+|+|+|||||||+++.|.+.++.. +..++.- -+..+ .|.. .+|.| .+.++..++.
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~-~~~v~~T--TR~~r-~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g 77 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDF-LFSISCT--TRAPR-PGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHD 77 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCcc-ccccCcc--CCCCC-CCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECC
Confidence 357899999999999999999999887642 1122111 01111 1111 01211 1222222110
Q ss_pred -HHHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhc-CC-cEEEEEECC--hHHHHHHHHHhhhhcCCCCcHHHH
Q 013831 329 -ANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FR-KIAVVVFPK--PEDLKIRSVKRFKEMGKEVPADAV 403 (435)
Q Consensus 329 -~~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~-~~~vv~l~~--~ee~~~R~~~R~~~~~~~vp~~vi 403 (435)
..-.-.+.++.+++.|+.+|+|-. . .. ++.++. +. .+.+|++.+ .+++++|+.+| +.. +++.+
T Consensus 78 ~~YGt~~~~i~~~~~~g~~~i~d~~-~--~g----~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R----~~~-s~e~i 145 (186)
T PRK14737 78 NYYGTPKAFIEDAFKEGRSAIMDID-V--QG----AKIIKEKFPERIVTIFIEPPSEEEWEERLIHR----GTD-SEESI 145 (186)
T ss_pred eeecCcHHHHHHHHHcCCeEEEEcC-H--HH----HHHHHHhCCCCeEEEEEECCCHHHHHHHHHhc----CCC-CHHHH
Confidence 000112235556789999999974 2 11 222232 43 334556643 38899999888 433 44444
Q ss_pred HHHH
Q 013831 404 NNML 407 (435)
Q Consensus 404 ~~m~ 407 (435)
+++.
T Consensus 146 ~~Rl 149 (186)
T PRK14737 146 EKRI 149 (186)
T ss_pred HHHH
Confidence 4443
No 66
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.65 E-value=6.7e-08 Score=81.93 Aligned_cols=34 Identities=24% Similarity=0.490 Sum_probs=29.6
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir 304 (435)
+|+++|+|||||||+|+.|++.++ +.+++.|+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~---~~~i~~d~~~ 34 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG---FPVISMDDLI 34 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT---CEEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC---CeEEEecceE
Confidence 689999999999999999999876 6677788853
No 67
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.62 E-value=2.7e-07 Score=83.07 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=33.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
+.+|+|+|+|||||||+|+.+++.++ +..++.|.++++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~---~~~~d~d~~~~~~ 42 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG---YDFIDTDHLIEAR 42 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC---CCEEEChHHHHHH
Confidence 56899999999999999999999986 5567888876653
No 68
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.61 E-value=6.3e-07 Score=87.87 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=81.6
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccC-------CCcc-CCC-C-------hHHHHHHHH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVP-------GLLR-KHN-Y-------SERFQCLMG 327 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~-------G~~~-~~~-~-------~~~~~~~~~ 327 (435)
+.+-+|+++|++||||||+|.+++..++.. .++++|.+|+.|+.. +..+ .|. + .+.-..+..
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~--~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g 167 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIR--SVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYG 167 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCC--EEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhh
Confidence 357889999999999999999999998742 478999998776521 1100 000 0 000001222
Q ss_pred HHH------HHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCc-EE-EEEECChHHHHHHHHHhhhh
Q 013831 328 RAN------AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRK-IA-VVVFPKPEDLKIRSVKRFKE 393 (435)
Q Consensus 328 ~~~------~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~-~~-vv~l~~~ee~~~R~~~R~~~ 393 (435)
... ..++..++.++++|.++||...|+.+..-+. ....+.. +. ++++.+.+.+++|...|.+.
T Consensus 168 ~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~---~~~~~~~~i~~~l~i~~ee~h~~RF~~R~~~ 238 (301)
T PRK04220 168 FERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKE---KYLENPNVFMFVLTLSDEEAHKARFYARARV 238 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHH---hhhcCCCEEEEEEEECCHHHHHHHHHHHHhh
Confidence 222 2367788899999999999999999975332 1223432 32 34446668899998888653
No 69
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=98.61 E-value=7e-07 Score=79.42 Aligned_cols=138 Identities=17% Similarity=0.165 Sum_probs=88.7
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF 347 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~v 347 (435)
|++-++.+|+||||+|..|..-.+. |-++-.|.| .|. .+ ...++.+ ++.+ +......|
T Consensus 1 vlvPIAtiGCGKTTva~aL~~LFg~--wgHvQnDnI------~~k------~~--~~f~~~~---l~~L---~~~~~~vV 58 (168)
T PF08303_consen 1 VLVPIATIGCGKTTVALALSNLFGE--WGHVQNDNI------TGK------RK--PKFIKAV---LELL---AKDTHPVV 58 (168)
T ss_pred CEeeecCCCcCHHHHHHHHHHHcCC--CCccccCCC------CCC------CH--HHHHHHH---HHHH---hhCCCCEE
Confidence 4677899999999999999998874 555655653 121 01 1222221 1111 12567789
Q ss_pred EEeCCCcCHHHHHHHHHHHhcCC--------c---EEEEEECC-h-----HHHHHHHHHhhhhcCC-----CC-----cH
Q 013831 348 IIDQTNVFKSARKRKLRLFVNFR--------K---IAVVVFPK-P-----EDLKIRSVKRFKEMGK-----EV-----PA 400 (435)
Q Consensus 348 IlD~Tn~~~~~R~~~~~~~~~~~--------~---~~vv~l~~-~-----ee~~~R~~~R~~~~~~-----~v-----p~ 400 (435)
|+|-.|....+|++++..+.... . +++.|+.. + +.+.+|..+|-. .| .. -.
T Consensus 59 iaDRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGD--NHQTika~~~~~~~~~ 136 (168)
T PF08303_consen 59 IADRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGD--NHQTIKADSKDEKKVE 136 (168)
T ss_pred EEeCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCc--CcceeecCCCCHHHHH
Confidence 99999999999999888776421 2 24445432 2 345667777721 11 01 14
Q ss_pred HHHHHHHhcccCCCCCCCCCCCcccceeccc
Q 013831 401 DAVNNMLANYVLPVNKDTPGSDELFDQRRGS 431 (435)
Q Consensus 401 ~vi~~m~~~fe~P~~~~~~~~~e~Fd~i~~~ 431 (435)
.+|+.+.++||+..... .++..||.|+.+
T Consensus 137 ~Im~gFi~rfep~~~~~--~pD~~FD~vI~L 165 (168)
T PF08303_consen 137 GIMEGFIKRFEPVDPDR--EPDSGFDHVIDL 165 (168)
T ss_pred HHHHHHHHhcCCCCCCC--CCccccCEeEeC
Confidence 68888899999876543 357899999876
No 70
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.61 E-value=8.3e-07 Score=80.02 Aligned_cols=130 Identities=23% Similarity=0.270 Sum_probs=78.3
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH-HhccCCCccCCCChHHHHHHHHHHH-------HHHHH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE-QMKVPGLLRKHNYSERFQCLMGRAN-------AIFDV 335 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~-~~~~~G~~~~~~~~~~~~~~~~~~~-------~~~~~ 335 (435)
..+.||++.|.|||||-|...+++..++ |.+||..++.+ +..-.|. +.+..+.+... .....
T Consensus 6 ~~~~IifVlGGPGsgKgTqC~kiv~ky~---ftHlSaGdLLR~E~~~~gs-------e~g~~I~~~i~~G~iVP~ei~~~ 75 (195)
T KOG3079|consen 6 DKPPIIFVLGGPGSGKGTQCEKIVEKYG---FTHLSAGDLLRAEIASAGS-------ERGALIKEIIKNGDLVPVEITLS 75 (195)
T ss_pred cCCCEEEEEcCCCCCcchHHHHHHHHcC---ceeecHHHHHHHHHccccC-------hHHHHHHHHHHcCCcCcHHHHHH
Confidence 4578999999999999999999999998 99999976644 3221121 22222222111 23344
Q ss_pred HHHHHhcCCC---eEEEeCCCcCHHHHHHHHHHHhc-CC--cEEEEEECCh-HHHHHHHHHhhhhcCC-CCcHHHHHHHH
Q 013831 336 LLSRASRTPR---NFIIDQTNVFKSARKRKLRLFVN-FR--KIAVVVFPKP-EDLKIRSVKRFKEMGK-EVPADAVNNML 407 (435)
Q Consensus 336 ll~~al~~g~---~vIlD~Tn~~~~~R~~~~~~~~~-~~--~~~vv~l~~~-ee~~~R~~~R~~~~~~-~vp~~vi~~m~ 407 (435)
+++.++.+.. .++||.---..++.. .|.. +. .-.+++++++ +++++|+..|...+.+ +-..+.+++..
T Consensus 76 LL~~am~~~~~~~~fLIDGyPR~~~q~~----~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~ 151 (195)
T KOG3079|consen 76 LLEEAMRSSGDSNGFLIDGYPRNVDQLV----EFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRL 151 (195)
T ss_pred HHHHHHHhcCCCCeEEecCCCCChHHHH----HHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHH
Confidence 5555544322 299999433333322 2322 32 2345788998 8999999999654221 22345555443
No 71
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.59 E-value=3.3e-07 Score=82.37 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=79.4
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhc-cCCCccCCCChHHHHHH---HHHHHHHHHHHHHHHhcC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK-VPGLLRKHNYSERFQCL---MGRANAIFDVLLSRASRT 343 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~-~~G~~~~~~~~~~~~~~---~~~~~~~~~~ll~~al~~ 343 (435)
+|+++|.|||||||+|+.+++.++ +.+++.|.+..++. ..|.. ...+... .......+...+......
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg---~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 73 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS---LKLISAGDIFRELAAKMGLD-----LIEFLNYAEENPEIDKKIDRRIHEIALK 73 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CceecHHHHHHHHHHHcCCC-----HHHHHHHHhcCcHHHHHHHHHHHHHHhc
Confidence 689999999999999999999876 66788876554431 12210 0111000 001111222233333335
Q ss_pred CCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHh-------cccCCCC
Q 013831 344 PRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLA-------NYVLPVN 415 (435)
Q Consensus 344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~-------~fe~P~~ 415 (435)
+.++|||..+.. ++ +..... .+|++.+| +.+.+|+.+|. + .-.+++..++.. .+....
T Consensus 74 ~~~~Vi~g~~~~------~~--~~~~~d-~~v~v~a~~~~r~~R~~~R~---~-~s~~~a~~~~~~~d~~~~~~~~~~~- 139 (171)
T TIGR02173 74 EKNVVLESRLAG------WI--VREYAD-VKIWLKAPLEVRARRIAKRE---G-KSLTVARSETIEREESEKRRYLKFY- 139 (171)
T ss_pred CCCEEEEecccc------ee--ecCCcC-EEEEEECCHHHHHHHHHHcc---C-CCHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 568888886431 11 112223 35677776 78889999883 2 122333332221 122111
Q ss_pred CCCCCCCcccceecccccCC
Q 013831 416 KDTPGSDELFDQRRGSAAFG 435 (435)
Q Consensus 416 ~~~~~~~e~Fd~i~~~~~~~ 435 (435)
.-.......||-++.++.++
T Consensus 140 ~~~~~~~~~ydl~i~t~~~~ 159 (171)
T TIGR02173 140 GIDIDDLSIYDLVINTSNWD 159 (171)
T ss_pred CCCccccccccEEEECCCCC
Confidence 12234568899888888764
No 72
>PLN02674 adenylate kinase
Probab=98.57 E-value=1.4e-06 Score=83.47 Aligned_cols=117 Identities=17% Similarity=0.199 Sum_probs=68.1
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH-hccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ-MKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRAS 341 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~-~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al 341 (435)
.-|++.|+|||||||.|+.+++.++ +.+||+++++++ +. .+. ........++.. -......++..++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~---~~his~GdllR~~i~-~~s----~~g~~i~~~~~~G~lvpd~iv~~lv~~~l 103 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVA-AKT----PLGIKAKEAMDKGELVSDDLVVGIIDEAM 103 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcC---CcEEchhHHHHHHHh-ccC----hhhHHHHHHHHcCCccCHHHHHHHHHHHH
Confidence 4478899999999999999999987 788888766443 32 121 111111111110 0011222333333
Q ss_pred c---CCCeEEEeCCCcCHHHHHHHHHHHhcCC-c-EEEEEECCh-HHHHHHHHHhh
Q 013831 342 R---TPRNFIIDQTNVFKSARKRKLRLFVNFR-K-IAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 342 ~---~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~-~~vv~l~~~-ee~~~R~~~R~ 391 (435)
. .+..+|||.---+..+-..+-..+...+ . -.+++++.+ +++++|+..|.
T Consensus 104 ~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~ 159 (244)
T PLN02674 104 KKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRW 159 (244)
T ss_pred hCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccc
Confidence 2 3467999996555444443222333333 3 356788887 78999999883
No 73
>PRK14528 adenylate kinase; Provisional
Probab=98.56 E-value=1.2e-06 Score=80.56 Aligned_cols=136 Identities=20% Similarity=0.189 Sum_probs=72.8
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH-HHhccCCCccCCCChHHHHHHHH--------HHHHHHHHHH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL-EQMKVPGLLRKHNYSERFQCLMG--------RANAIFDVLL 337 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir-~~~~~~G~~~~~~~~~~~~~~~~--------~~~~~~~~ll 337 (435)
+-|++.|+|||||||+|+.+++.++ +.+++.+++. ..+. .+. .....-..... .....+...+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~---~~~is~~~~lr~~~~-~~~----~~g~~~~~~~~~g~lvp~~~~~~~~~~~l 73 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS---IPQISTGDILREAVK-NQT----AMGIEAKRYMDAGDLVPDSVVIGIIKDRI 73 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC---CCeeeCCHHHHHHhh-cCC----HHHHHHHHHHhCCCccCHHHHHHHHHHHH
Confidence 4588999999999999999998886 5567777664 4332 111 00000000000 0111122222
Q ss_pred HHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhhhhcCC-CCcHHHHHHHHhccc
Q 013831 338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRFKEMGK-EVPADAVNNMLANYV 411 (435)
Q Consensus 338 ~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R~~~~~~-~vp~~vi~~m~~~fe 411 (435)
... .....+|||.---+..+-..+.+.+...+ .-.+|+++.+ +++.+|+..|....++ +-.++++.+-.+.|.
T Consensus 74 ~~~-~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~ 150 (186)
T PRK14528 74 REA-DCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYN 150 (186)
T ss_pred hCc-CccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHH
Confidence 111 22356999984333333232222333332 2356788887 8999999998543332 234566666555443
No 74
>PRK07261 topology modulation protein; Provisional
Probab=98.53 E-value=1.3e-07 Score=85.92 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=57.1
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFI 348 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~vI 348 (435)
|+++|.|||||||+|+.+++.++ ...++.|.+.-. .+ +.. ...+.... .+..++.++. +|
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~---~~~i~~D~~~~~---~~-~~~----~~~~~~~~--------~~~~~~~~~~-wI 62 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYN---CPVLHLDTLHFQ---PN-WQE----RDDDDMIA--------DISNFLLKHD-WI 62 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC---CCeEecCCEEec---cc-ccc----CCHHHHHH--------HHHHHHhCCC-EE
Confidence 78999999999999999998765 334555643210 11 111 00111211 2333445555 99
Q ss_pred EeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831 349 IDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 349 lD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
+|+++....... .+ .. --.+|+++.| ..|+.|+.+|.
T Consensus 63 idg~~~~~~~~~-~l---~~--ad~vI~Ld~p~~~~~~R~lkR~ 100 (171)
T PRK07261 63 IDGNYSWCLYEE-RM---QE--ADQIIFLNFSRFNCLYRAFKRY 100 (171)
T ss_pred EcCcchhhhHHH-HH---HH--CCEEEEEcCCHHHHHHHHHHHH
Confidence 999865422121 12 11 1246788887 88999998885
No 75
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.53 E-value=2.3e-06 Score=78.21 Aligned_cols=114 Identities=24% Similarity=0.274 Sum_probs=64.7
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHH--------HHHHHHHHHHHHH
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMG--------RANAIFDVLLSRA 340 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~--------~~~~~~~~ll~~a 340 (435)
|++.|+|||||||+|++|++.++ ..+||++.+.+.-...+. .....-...++ ....++...+..+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~---i~hlstgd~~r~~~~~~t----~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~ 75 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLG---LPHLDTGDILRAAIAERT----ELGEEIKKYIDKGELVPDEIVNGLVKERLDEA 75 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CcEEcHhHHhHhhhccCC----hHHHHHHHHHHcCCccchHHHHHHHHHHHHhh
Confidence 78899999999999999999987 789998776443111111 01111011111 1112333344333
Q ss_pred hcCCCeEEEeCCCcCHHHHHHHHHH-HhcCC-c-EEEEEECCh-HHHHHHHHHhh
Q 013831 341 SRTPRNFIIDQTNVFKSARKRKLRL-FVNFR-K-IAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 341 l~~g~~vIlD~Tn~~~~~R~~~~~~-~~~~~-~-~~vv~l~~~-ee~~~R~~~R~ 391 (435)
-... .+|+|.---+-. +.+.++. +..++ + -.++.++.+ +.+..|...|.
T Consensus 76 d~~~-~~I~dg~PR~~~-qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~ 128 (178)
T COG0563 76 DCKA-GFILDGFPRTLC-QARALKRLLKELGVRLDMVIELDVPEELLLERLLGRR 128 (178)
T ss_pred cccC-eEEEeCCCCcHH-HHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCcc
Confidence 1122 799999533333 3333443 33333 3 345677776 78889998883
No 76
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.53 E-value=9e-07 Score=80.56 Aligned_cols=127 Identities=13% Similarity=0.156 Sum_probs=63.9
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCcc-EEEeccHHHHHHhccCCCccCCCC--hHHHHHHHHHH-----------HHH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKR-YILLGTNLILEQMKVPGLLRKHNY--SERFQCLMGRA-----------NAI 332 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~-~~~ls~D~ir~~~~~~G~~~~~~~--~~~~~~~~~~~-----------~~~ 332 (435)
++++++|+|||||||+++.++..++... ...+.++.-+. ....|. .+.+ ...+....... ..-
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRP-ASAGGE--NHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccC-CCCCCc--cccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 4789999999999999999988764221 11111111000 000110 0000 01111100000 000
Q ss_pred HHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHH
Q 013831 333 FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNM 406 (435)
Q Consensus 333 ~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m 406 (435)
....+..++..|.+||+|.. ...+....+ .+....+|+++++ +++.+|+..| +...++.+..++
T Consensus 79 ~~~~i~~~~~~g~~vv~~g~---~~~~~~~~~---~~~~~~~i~l~~~~~~~~~Rl~~R----~~~~~~~~~~rl 143 (179)
T TIGR02322 79 IPAEIDQWLEAGDVVVVNGS---RAVLPEARQ---RYPNLLVVNITASPDVLAQRLAAR----GRESREEIEERL 143 (179)
T ss_pred ChHHHHHHHhcCCEEEEECC---HHHHHHHHH---HCCCcEEEEEECCHHHHHHHHHHc----CCCCHHHHHHHH
Confidence 01123334578899999986 222222111 1235677888876 8999999988 333444444454
No 77
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.52 E-value=1.9e-07 Score=81.64 Aligned_cols=142 Identities=13% Similarity=0.087 Sum_probs=70.2
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF 347 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~v 347 (435)
+|+++|+|||||||+|+.+++.++ +..++.|.+..+.. +. ...+..........+...+... ..+.++
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~---~~~~~~~~i~~e~~--~~------~~~~~~~~~~i~~~l~~~~~~~-~~~~~~ 68 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG---LPYLDTGGIRTEEV--GK------LASEVAAIPEVRKALDERQREL-AKKPGI 68 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---CceeccccCCHHHH--HH------HHHHhcccHhHHHHHHHHHHHH-hhCCCE
Confidence 588999999999999999999876 44566553211100 00 0000000011111222233222 334579
Q ss_pred EEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhhhcCCCCc-HHHHHHHHhcccCCCC--CCCCCCCc
Q 013831 348 IIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVP-ADAVNNMLANYVLPVN--KDTPGSDE 423 (435)
Q Consensus 348 IlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp-~~vi~~m~~~fe~P~~--~~~~~~~e 423 (435)
|||...... + .+ . ....+|++.++ +...+|..+|.....+.++ +++...+..+- .+.. --.+-...
T Consensus 69 Vidg~~~~~------~-~~-~-~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~ 138 (147)
T cd02020 69 VLEGRDIGT------V-VF-P-DADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERD-ERDSTRYVAPLKLA 138 (147)
T ss_pred EEEeeeeee------E-Ec-C-CCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HHhhhcccccccCC
Confidence 999864311 1 11 1 12244677665 7888898886543333444 44444443321 1110 01112456
Q ss_pred ccceeccc
Q 013831 424 LFDQRRGS 431 (435)
Q Consensus 424 ~Fd~i~~~ 431 (435)
.||-++.+
T Consensus 139 ~~dl~i~~ 146 (147)
T cd02020 139 EDAIVIDT 146 (147)
T ss_pred CCcEEEeC
Confidence 66666554
No 78
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.52 E-value=7.9e-07 Score=81.70 Aligned_cols=113 Identities=14% Similarity=0.217 Sum_probs=60.8
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCC-CC-hHHHHHHHHH---H-H--------HH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKH-NY-SERFQCLMGR---A-N--------AI 332 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~-~~-~~~~~~~~~~---~-~--------~~ 332 (435)
++++++|++||||||+++.++...+. -+.++...+.+... .+. .++ .+ ...+....+. + . ..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~--~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~ 78 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQT--QLLVAHRYITRPAS-AGS-ENHIALSEQEFFTRAGQNLFALSWHANGLYYGV 78 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCC--eEEEcCEECCCccc-hhH-HhheeEcHHHHHHHHHCCchhhHHHHhCCccCC
Confidence 58899999999999999999887642 12222111111000 000 001 01 1111111110 0 0 00
Q ss_pred HHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHh
Q 013831 333 FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 333 ~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R 390 (435)
.+ -++.+++.|.+||+|.+ ...+.. ..+.+. ...+|+++++ +++.+|+..|
T Consensus 79 ~~-~~~~~l~~g~~VI~~G~---~~~~~~---~~~~~~~~~~vi~l~~s~e~l~~RL~~R 131 (186)
T PRK10078 79 GI-EIDLWLHAGFDVLVNGS---RAHLPQ---ARARYQSALLPVCLQVSPEILRQRLENR 131 (186)
T ss_pred cH-HHHHHHhCCCEEEEeCh---HHHHHH---HHHHcCCCEEEEEEeCCHHHHHHHHHHh
Confidence 11 24556788999999876 222222 122333 5677888887 8999999988
No 79
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.50 E-value=3e-06 Score=77.73 Aligned_cols=121 Identities=15% Similarity=0.081 Sum_probs=61.8
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCc--cEEEecc-------HHHHHHhccCCCccCCCChHHHHHHHHHH--HHHHHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGT-------NLILEQMKVPGLLRKHNYSERFQCLMGRA--NAIFDVL 336 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~--~~~~ls~-------D~ir~~~~~~G~~~~~~~~~~~~~~~~~~--~~~~~~l 336 (435)
+|++.|++||||||+++.|++.+... .++.+.. +.+++.+. ... ..........+.-.+ ...+...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~r~~~~~~~ 78 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLL-DPE--DEKMDPRAELLLFAADRAQHVEEV 78 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHh-ccC--ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999876422 1222211 23333221 110 001111111111111 1122334
Q ss_pred HHHHhcCCCeEEEeCCCcCHHH----H----HHHHHHH---h-cC-CcEEEEEECCh-HHHHHHHHHhh
Q 013831 337 LSRASRTPRNFIIDQTNVFKSA----R----KRKLRLF---V-NF-RKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 337 l~~al~~g~~vIlD~Tn~~~~~----R----~~~~~~~---~-~~-~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
+..++..|..||+|....+.-. . ..++..+ . .. ....++++.++ +++++|+.+|.
T Consensus 79 ~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~ 147 (200)
T cd01672 79 IKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARG 147 (200)
T ss_pred HHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 4445678999999943221110 0 1112222 2 11 23457788876 89999999985
No 80
>PRK03839 putative kinase; Provisional
Probab=98.49 E-value=4e-07 Score=83.09 Aligned_cols=99 Identities=15% Similarity=0.202 Sum_probs=58.6
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF 347 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~v 347 (435)
.|+++|+|||||||+++.+++.++ +..++.|.+..+..+ +.. +....+..... +...+... ..+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~---~~~id~d~~~~~~~~-~~~----~~~~~~~~~~~----l~~~~~~~-~~~~~v 68 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG---YEYVDLTEFALKKGI-GEE----KDDEMEIDFDK----LAYFIEEE-FKEKNV 68 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEEehhhhhhhcCC-ccc----CChhhhcCHHH----HHHHHHHh-ccCCCE
Confidence 488999999999999999999987 667788877654321 111 11111111111 11122111 235679
Q ss_pred EEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831 348 IIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 348 IlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
|+|..+. . +. ..-.+|+++++ +++.+|+..|.
T Consensus 69 IidG~~~------~----l~--~~~~vi~L~~~~~~~~~Rl~~R~ 101 (180)
T PRK03839 69 VLDGHLS------H----LL--PVDYVIVLRAHPKIIKERLKERG 101 (180)
T ss_pred EEEeccc------c----cc--CCCEEEEEECCHHHHHHHHHHcC
Confidence 9998421 0 11 11235678775 89999998873
No 81
>PRK13808 adenylate kinase; Provisional
Probab=98.47 E-value=2.5e-06 Score=85.02 Aligned_cols=113 Identities=21% Similarity=0.252 Sum_probs=63.0
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH-hccCCCccCCCChHHHHHHH--------HHHHHHHHHHHHH
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ-MKVPGLLRKHNYSERFQCLM--------GRANAIFDVLLSR 339 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~-~~~~G~~~~~~~~~~~~~~~--------~~~~~~~~~ll~~ 339 (435)
|||.|+|||||||+++.|++.++ +.+|+.+++++. +. .+. ........++ +....++...+..
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~yg---l~~is~gdlLR~~i~-~~s----~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~ 74 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYG---IVQLSTGDMLRAAVA-AGT----PVGLKAKDIMASGGLVPDEVVVGIISDRIEQ 74 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CceecccHHHHHHhh-cCC----hhhHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 67899999999999999999987 678888766543 21 111 0000000110 1111112222211
Q ss_pred HhcCCCeEEEeCCCcCHHHHHHHHH-HHhcCC--cEEEEEECCh-HHHHHHHHHhh
Q 013831 340 ASRTPRNFIIDQTNVFKSARKRKLR-LFVNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 340 al~~g~~vIlD~Tn~~~~~R~~~~~-~~~~~~--~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
. .....+|||.---+..+-. .+. ++...+ .-.+|+|+.+ +++++|+..|.
T Consensus 75 ~-~~~~G~ILDGFPRt~~QA~-~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~ 128 (333)
T PRK13808 75 P-DAANGFILDGFPRTVPQAE-ALDALLKDKQLKLDAVVELRVNEGALLARVETRV 128 (333)
T ss_pred c-cccCCEEEeCCCCCHHHHH-HHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCc
Confidence 1 2235699998433333333 333 333322 3346788887 89999999873
No 82
>PRK06217 hypothetical protein; Validated
Probab=98.47 E-value=1.8e-07 Score=85.67 Aligned_cols=103 Identities=17% Similarity=0.053 Sum_probs=60.7
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN 346 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~ 346 (435)
.-|+++|.|||||||+|++|++.++ +.+++.|.+... .+.. ........+... .++...+..+..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~---~~~~~~D~~~~~---~~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~ 66 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD---IPHLDTDDYFWL---PTDP-PFTTKRPPEERL--------RLLLEDLRPREG 66 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CcEEEcCceeec---cCCC-CccccCCHHHHH--------HHHHHHHhcCCC
Confidence 3489999999999999999999986 557777876432 1110 000000111111 122223345678
Q ss_pred EEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831 347 FIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 347 vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
+|||.... . .+. .+... .-.+|+++.| +++++|+..|.
T Consensus 67 ~vi~G~~~-~-~~~----~~~~~-~d~~i~Ld~~~~~~~~Rl~~R~ 105 (183)
T PRK06217 67 WVLSGSAL-G-WGD----PLEPL-FDLVVFLTIPPELRLERLRLRE 105 (183)
T ss_pred EEEEccHH-H-HHH----HHHhh-CCEEEEEECCHHHHHHHHHcCc
Confidence 99997532 1 222 12221 1246788887 89999999985
No 83
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.47 E-value=2.4e-06 Score=75.54 Aligned_cols=142 Identities=19% Similarity=0.302 Sum_probs=80.3
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhcc-CCCc-cC-CCC---hHHHHHHHHHHHHHHHHHHHHHh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV-PGLL-RK-HNY---SERFQCLMGRANAIFDVLLSRAS 341 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~-~G~~-~~-~~~---~~~~~~~~~~~~~~~~~ll~~al 341 (435)
+|.+.|+|||||||+|+.+++.++ +-.+|+-.++++|-. .|.. .+ ..+ .+.+++.+++ .....+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g---l~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~-------rq~e~a 71 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG---LKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDR-------RQKELA 71 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC---CceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHH-------HHHHHH
Confidence 577899999999999999999988 566777666665531 2220 00 001 2233333332 222223
Q ss_pred cCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHH-------hcccCC
Q 013831 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNML-------ANYVLP 413 (435)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~-------~~fe~P 413 (435)
+ ..++||+.- +. -|+ ++.+..+. ||+.+| ++..+|.++|. +.++ +++...+. ++|. -
T Consensus 72 ~-~~nvVlegr-LA-----~Wi--~k~~adlk-I~L~Apl~vRa~Ria~RE---gi~~-~~a~~~~~~RE~se~kRY~-~ 136 (179)
T COG1102 72 K-EGNVVLEGR-LA-----GWI--VREYADLK-IWLKAPLEVRAERIAKRE---GIDV-DEALAETVEREESEKKRYK-K 136 (179)
T ss_pred H-cCCeEEhhh-hH-----HHH--hccccceE-EEEeCcHHHHHHHHHHhc---CCCH-HHHHHHHHHHHHHHHHHHH-H
Confidence 4 778999874 31 122 12333455 577777 89999999994 3333 22222221 1221 1
Q ss_pred CCCCCCCCCcccceecccccC
Q 013831 414 VNKDTPGSDELFDQRRGSAAF 434 (435)
Q Consensus 414 ~~~~~~~~~e~Fd~i~~~~~~ 434 (435)
..+-..+....||-|+.++.+
T Consensus 137 ~YgIDidDlSiyDLVinTs~~ 157 (179)
T COG1102 137 IYGIDIDDLSIYDLVINTSKW 157 (179)
T ss_pred HhCCCCccceeeEEEEecccC
Confidence 122233447788888887765
No 84
>PRK04040 adenylate kinase; Provisional
Probab=98.46 E-value=1.5e-06 Score=80.16 Aligned_cols=38 Identities=24% Similarity=0.415 Sum_probs=30.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEeccHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTNLILE 305 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls~D~ir~ 305 (435)
+.+|+++|.|||||||+++.+++.++ + +..++.++++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~--~~~~~~g~~~~ 40 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKED--YKIVNFGDVML 40 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccC--CeEEecchHHH
Confidence 57899999999999999999999985 3 55666666643
No 85
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.45 E-value=1.1e-06 Score=79.95 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=23.0
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
++|+++|++||||||+++.++...+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCc
Confidence 6899999999999999999998765
No 86
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.45 E-value=9e-07 Score=82.79 Aligned_cols=30 Identities=10% Similarity=0.106 Sum_probs=25.3
Q ss_pred CCCCcceEEEEEccCCCChhHHHHHHHhhC
Q 013831 261 CNMKDCEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 261 ~~~~~~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
+.+..+.+|+++|+|||||||+++.|.+..
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 445667899999999999999999997643
No 87
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.44 E-value=3.3e-06 Score=76.05 Aligned_cols=106 Identities=19% Similarity=0.209 Sum_probs=61.5
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCCh-HHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYS-ERFQCLMGRANAIFDVLLSRASRTPRN 346 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~ll~~al~~g~~ 346 (435)
=|+|+|+|||||||+.+.+++.+. +.-+.+|.++++- .|-.-..-|. .-++...+. -.+.+...+..+ +
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~---~~F~D~D~~Ie~~--~g~sI~eIF~~~GE~~FR~~----E~~vl~~l~~~~-~ 73 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALN---LPFIDTDQEIEKR--TGMSIAEIFEEEGEEGFRRL----ETEVLKELLEED-N 73 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcC---CCcccchHHHHHH--HCcCHHHHHHHHhHHHHHHH----HHHHHHHHhhcC-C
Confidence 378999999999999999999987 5567889876652 2210000011 111111111 112344444555 4
Q ss_pred EEEeC---CCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHH
Q 013831 347 FIIDQ---TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK 389 (435)
Q Consensus 347 vIlD~---Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~ 389 (435)
.||-. +-.+++.|. .+++. -.+||++++ +.+.+|++.
T Consensus 74 ~ViaTGGG~v~~~enr~----~l~~~--g~vv~L~~~~e~l~~Rl~~ 114 (172)
T COG0703 74 AVIATGGGAVLSEENRN----LLKKR--GIVVYLDAPFETLYERLQR 114 (172)
T ss_pred eEEECCCccccCHHHHH----HHHhC--CeEEEEeCCHHHHHHHhcc
Confidence 45543 334444444 23332 367899887 999999983
No 88
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.44 E-value=2.9e-06 Score=75.13 Aligned_cols=108 Identities=21% Similarity=0.214 Sum_probs=59.8
Q ss_pred EEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH-HhccCCCccCCCChHHHHHHHHH-------HHHHHHHHHHHHh-
Q 013831 271 MVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE-QMKVPGLLRKHNYSERFQCLMGR-------ANAIFDVLLSRAS- 341 (435)
Q Consensus 271 m~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~-~~~~~G~~~~~~~~~~~~~~~~~-------~~~~~~~ll~~al- 341 (435)
+.|+|||||||+|+++++.++ +++||..++.+ ++. .+ ++.++.+.+. -...+..++...+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~---~~~is~~~llr~~~~-~~-------s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~ 69 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG---LVHISVGDLLREEIK-SD-------SELGKQIQEYLDNGELVPDELVIELLKERLE 69 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT---SEEEEHHHHHHHHHH-TT-------SHHHHHHHHHHHTTSS--HHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC---cceechHHHHHHHHh-hh-------hHHHHHHHHHHHhhccchHHHHHHHHHHHHh
Confidence 589999999999999999987 78888866544 332 11 1111111111 0112222333332
Q ss_pred --cCCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHH
Q 013831 342 --RTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVK 389 (435)
Q Consensus 342 --~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~ 389 (435)
...+.+|||.---+..+-..+.+.+.... .-.+|+++.+ +++.+|...
T Consensus 70 ~~~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 70 QPPCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp SGGTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred hhcccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 24678999995444443333222222232 3367788887 788888765
No 89
>PRK14529 adenylate kinase; Provisional
Probab=98.43 E-value=1.9e-06 Score=81.41 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=66.3
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH-HHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhcC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASRT 343 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i-r~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~~ 343 (435)
|+|.|+|||||||.|+.+++.+. +..+|+.++ |+.+. .+. ........++.. -......++...+.+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~---~~~is~gdllr~~i~-~~t----~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~ 74 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD---LAHIESGAIFREHIG-GGT----ELGKKAKEYIDRGDLVPDDITIPMILETLKQ 74 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC---CCCcccchhhhhhcc-CCC----hHHHHHHHHHhccCcchHHHHHHHHHHHHhc
Confidence 77899999999999999999987 556665444 44321 111 011111111111 001122233333321
Q ss_pred --CCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhh
Q 013831 344 --PRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 344 --g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
.+.+|||.---+..+-..+...+...+ .-.+++++.+ +++++|+..|.
T Consensus 75 ~~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~ 127 (223)
T PRK14529 75 DGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRR 127 (223)
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCc
Confidence 567999996555555444333444433 3357788887 88999999883
No 90
>PRK13947 shikimate kinase; Provisional
Probab=98.42 E-value=1.1e-06 Score=79.13 Aligned_cols=37 Identities=22% Similarity=0.418 Sum_probs=31.4
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
-|+++|+|||||||+|+.+++.++ +..++.|.+++++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg---~~~id~d~~~~~~ 39 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS---FGFIDTDKEIEKM 39 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC---CCEEECchhhhhh
Confidence 389999999999999999999987 5567788776654
No 91
>PRK13948 shikimate kinase; Provisional
Probab=98.41 E-value=3e-06 Score=77.75 Aligned_cols=107 Identities=17% Similarity=0.212 Sum_probs=63.3
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc-cCC--CChH-HHHHHHHHHHHHHHHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL-RKH--NYSE-RFQCLMGRANAIFDVLLSRA 340 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~-~~~--~~~~-~~~~~~~~~~~~~~~ll~~a 340 (435)
.+..|+|+|+|||||||+++.+++.++ +..+++|.+++++. |.. .+. .+.+ .|..+.. +++..+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg---~~~iD~D~~ie~~~--g~si~~if~~~Ge~~fR~~E~-------~~l~~l 76 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM---LHFIDTDRYIERVT--GKSIPEIFRHLGEAYFRRCEA-------EVVRRL 76 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC---CCEEECCHHHHHHH--hCCHHHHHHHhCHHHHHHHHH-------HHHHHH
Confidence 467899999999999999999999887 55678898776642 310 000 0111 1221111 223333
Q ss_pred hcCCCeEEEe---CCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 013831 341 SRTPRNFIID---QTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 341 l~~g~~vIlD---~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R 390 (435)
+..+.. ||. .+...+..|+. +.+. -.+|++..+ +++.+|+..+
T Consensus 77 ~~~~~~-VIa~GgG~v~~~~n~~~----l~~~--g~vV~L~~~~e~l~~Rl~~~ 123 (182)
T PRK13948 77 TRLDYA-VISLGGGTFMHEENRRK----LLSR--GPVVVLWASPETIYERTRPG 123 (182)
T ss_pred HhcCCe-EEECCCcEEcCHHHHHH----HHcC--CeEEEEECCHHHHHHHhcCC
Confidence 344444 444 45566665553 3332 346678776 8899998543
No 92
>PRK08118 topology modulation protein; Reviewed
Probab=98.39 E-value=1.6e-06 Score=78.41 Aligned_cols=98 Identities=15% Similarity=0.185 Sum_probs=57.5
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF 347 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~v 347 (435)
-|+++|+|||||||+|+++++.++ ..+++.|.+... .| +. .... +... .+++.+++ +...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~---~~~~~lD~l~~~---~~-w~---~~~~-~~~~--------~~~~~~~~-~~~w 62 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN---IPVHHLDALFWK---PN-WE---GVPK-EEQI--------TVQNELVK-EDEW 62 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CCceecchhhcc---cC-Cc---CCCH-HHHH--------HHHHHHhc-CCCE
Confidence 478999999999999999999886 445666765422 12 10 0110 1111 12222223 3579
Q ss_pred EEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhh
Q 013831 348 IIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK 392 (435)
Q Consensus 348 IlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~ 392 (435)
|+|.... ... ...+ .. --.+|+++.| +.|..|+.+|..
T Consensus 63 VidG~~~-~~~-~~~l---~~--~d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 63 IIDGNYG-GTM-DIRL---NA--ADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred EEeCCcc-hHH-HHHH---Hh--CCEEEEEeCCHHHHHHHHHHHHH
Confidence 9999633 221 1111 11 2346788887 788889888843
No 93
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.39 E-value=3e-06 Score=80.57 Aligned_cols=112 Identities=21% Similarity=0.188 Sum_probs=64.4
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH-hccCCCccCCCChHHHHHHH--------HHHHHHHHHHHHH
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ-MKVPGLLRKHNYSERFQCLM--------GRANAIFDVLLSR 339 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~-~~~~G~~~~~~~~~~~~~~~--------~~~~~~~~~ll~~ 339 (435)
|++.|+|||||||+|+.+++.++ +.+||+|++.++ +...+. ....-..+. +.....+...+..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g---~~~is~gdllr~~~~~~t~-----lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~ 80 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN---LKHINMGNILREEIKAKTT-----IGKEIQKVVTSGNLVPDNLVIAIVKDEIAK 80 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CcEEECChHHHHHhhcCCh-----HHHHHHHHHHcCCcCCHHHHHHHHHHHHHh
Confidence 88899999999999999999987 778888776543 221010 000000000 0111122222222
Q ss_pred H-hcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831 340 A-SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 340 a-l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
. ....+.+|||.---+..++.. +..+ .....+++++.+ +++++|+..|.
T Consensus 81 ~~~~~~~g~iLDGfPRt~~Qa~~-l~~~--~~~~~vi~l~~~~~~~~~Rl~~Rr 131 (229)
T PTZ00088 81 VTDDCFKGFILDGFPRNLKQCKE-LGKI--TNIDLFVNIYLPRNILIKKLLGRR 131 (229)
T ss_pred hccccCceEEEecCCCCHHHHHH-HHhc--CCCCEEEEEeCCHHHHHHHHHcCc
Confidence 1 134567999995444444432 3222 123456788887 78899998883
No 94
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.39 E-value=1.1e-06 Score=80.62 Aligned_cols=115 Identities=13% Similarity=0.196 Sum_probs=60.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc--cCCCC--hHHHHHHHHHH------------
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL--RKHNY--SERFQCLMGRA------------ 329 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~--~~~~~--~~~~~~~~~~~------------ 329 (435)
.++|+++|++||||+|+++.|.+..+..-..+++. .- +..+ .|.. .++.| ...++...+.-
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~-Tt-R~~r-~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~ 78 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSH-TT-RPPR-PGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNY 78 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeee-cC-CCCC-CCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcC
Confidence 46899999999999999999999875311111111 00 1111 1110 01111 12222221110
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhc-CCcEEEEEEC-Ch-HHHHHHHHHh
Q 013831 330 NAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFP-KP-EDLKIRSVKR 390 (435)
Q Consensus 330 ~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~~~~vv~l~-~~-ee~~~R~~~R 390 (435)
.......+..+++.|+.+|+|.+ .. . +..+.. +....+|++. ++ +++.+|+..|
T Consensus 79 YGt~~~~i~~~~~~~~~~ild~~-~~-~-----~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R 135 (184)
T smart00072 79 YGTSKETIRQVAEQGKHCLLDID-PQ-G-----VKQLRKAQLYPIVIFIAPPSSEELERRLRGR 135 (184)
T ss_pred cccCHHHHHHHHHcCCeEEEEEC-HH-H-----HHHHHHhCCCcEEEEEeCcCHHHHHHHHHhc
Confidence 00112245556688999999986 32 1 122222 2244566774 33 6799999988
No 95
>PRK04182 cytidylate kinase; Provisional
Probab=98.39 E-value=8.8e-07 Score=80.19 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=59.3
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhc-cCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK-VPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN 346 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~ 346 (435)
+|+++|.|||||||+|+.+++.++ +..++.|++.+... ..|.... .+. ............+...+......+.+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg---~~~id~~~~~~~~~~~~g~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG---LKHVSAGEIFRELAKERGMSLE-EFN-KYAEEDPEIDKEIDRRQLEIAEKEDN 76 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CcEecHHHHHHHHHHHcCCCHH-HHH-HHhhcCchHHHHHHHHHHHHHhcCCC
Confidence 689999999999999999999887 66787666544321 1221100 000 00000000011122222222224567
Q ss_pred EEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831 347 FIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 347 vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
+|+|..... ++ +... ...+|++.+| +++.+|+..|.
T Consensus 77 ~Vi~g~~~~------~~--~~~~-~~~~V~l~a~~e~~~~Rl~~r~ 113 (180)
T PRK04182 77 VVLEGRLAG------WM--AKDY-ADLKIWLKAPLEVRAERIAERE 113 (180)
T ss_pred EEEEEeecc------eE--ecCC-CCEEEEEECCHHHHHHHHHhcc
Confidence 888874321 10 1111 2345688887 88999998883
No 96
>PRK13949 shikimate kinase; Provisional
Probab=98.37 E-value=4.8e-06 Score=75.47 Aligned_cols=36 Identities=19% Similarity=0.417 Sum_probs=30.4
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~ 306 (435)
=|+++|+|||||||+++.+++.+. +..+++|.+..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~---~~~id~D~~i~~ 38 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG---LSFIDLDFFIEN 38 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CCeecccHHHHH
Confidence 478999999999999999999987 667888876543
No 97
>PRK06547 hypothetical protein; Provisional
Probab=98.36 E-value=1.4e-06 Score=79.25 Aligned_cols=114 Identities=18% Similarity=0.131 Sum_probs=64.8
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHH---------
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFD--------- 334 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~--------- 334 (435)
..+.+|++.|+|||||||+|+.+++.++ +..++.|.+.... .+. ....+.+.+.....-+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~---~~~~~~d~~~~~~--~~~------~~~~~~l~~~~l~~g~~~~~~yd~~ 81 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTG---FQLVHLDDLYPGW--HGL------AAASEHVAEAVLDEGRPGRWRWDWA 81 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---CCeecccceeccc--ccC------ChHHHHHHHHHHhCCCCceecCCCC
Confidence 3467899999999999999999999875 5567777543210 010 0011111111100000
Q ss_pred -H-HHH-HHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831 335 -V-LLS-RASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 335 -~-ll~-~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
. ... ..+..+.++|++........ ....+.+.+.+.+|++++| +++.+|..+|.
T Consensus 82 ~~~~~~~~~l~~~~vVIvEG~~al~~~---~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd 139 (172)
T PRK06547 82 NNRPGDWVSVEPGRRLIIEGVGSLTAA---NVALASLLGEVLTVWLDGPEALRKERALARD 139 (172)
T ss_pred CCCCCCcEEeCCCCeEEEEehhhccHH---HHHHhccCCCEEEEEEECCHHHHHHHHHhcC
Confidence 0 000 01224567889997665322 2222333335678899998 89999999993
No 98
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.33 E-value=6.7e-06 Score=74.71 Aligned_cols=109 Identities=12% Similarity=0.149 Sum_probs=59.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChH-HHHHHHHHHHHHHHHHHHHHhcCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRASRTP 344 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~ll~~al~~g 344 (435)
...|+++|++||||||+++.++..+. +..+++|..++++. |..-...+.. ........... ++......
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~---~~~vd~D~~i~~~~--g~~i~~~~~~~g~~~fr~~e~~----~l~~l~~~- 73 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN---MEFYDSDQEIEKRT--GADIGWVFDVEGEEGFRDREEK----VINELTEK- 73 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC---CcEEECCchHHHHh--CcCHhHHHHHhCHHHHHHHHHH----HHHHHHhC-
Confidence 35689999999999999999999876 55677786555432 2100000100 00111111122 33232233
Q ss_pred CeEEEeCC---CcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 013831 345 RNFIIDQT---NVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 345 ~~vIlD~T---n~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R 390 (435)
..+|+... -..+..|. .+... -.+|+++.+ +++.+|+..+
T Consensus 74 ~~~vi~~ggg~v~~~~~~~----~l~~~--~~vv~L~~~~e~~~~Ri~~~ 117 (172)
T PRK05057 74 QGIVLATGGGSVKSRETRN----RLSAR--GVVVYLETTIEKQLARTQRD 117 (172)
T ss_pred CCEEEEcCCchhCCHHHHH----HHHhC--CEEEEEeCCHHHHHHHHhCC
Confidence 34555532 23333333 23332 257889887 9999999765
No 99
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.32 E-value=5.3e-06 Score=77.09 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=24.5
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..++|+++|++||||||+++.++..++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 467999999999999999999998875
No 100
>PRK14526 adenylate kinase; Provisional
Probab=98.30 E-value=1.6e-06 Score=81.36 Aligned_cols=111 Identities=20% Similarity=0.250 Sum_probs=60.0
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH-HHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHh--
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRAS-- 341 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i-r~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al-- 341 (435)
|+++|+|||||||+++.+++.++ +.+++++++ |+.+. .+. ........+++. -......++...+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~---~~~is~G~llr~~~~-~~t----~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~ 74 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELN---YYHISTGDLFRENIL-NST----PLGKEIKQIVENGQLVPDSITIKIVEDKINT 74 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CceeecChHHHHhcc-cCC----hhhHHHHHHHHcCccCChHHHHHHHHHHHhc
Confidence 67899999999999999998876 567777665 44332 111 000000111100 0011112222222
Q ss_pred -cCCCeEEEeCCCcCHHHHHHHHHHHhcC-CcEEEEEECCh-HHHHHHHHHhh
Q 013831 342 -RTPRNFIIDQTNVFKSARKRKLRLFVNF-RKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 342 -~~g~~vIlD~Tn~~~~~R~~~~~~~~~~-~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
.....+|||.---+..+- +.+... ....++++..+ +++.+|+..|.
T Consensus 75 ~~~~~g~ilDGfPR~~~Qa----~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 123 (211)
T PRK14526 75 IKNNDNFILDGFPRNINQA----KALDKFLPNIKIINFLIDEELLIKRLSGRR 123 (211)
T ss_pred ccccCcEEEECCCCCHHHH----HHHHHhcCCCEEEEEECCHHHHHHHHHCCC
Confidence 235679999743333322 223332 23456667666 88999999884
No 101
>PLN02459 probable adenylate kinase
Probab=98.29 E-value=4e-06 Score=80.80 Aligned_cols=111 Identities=21% Similarity=0.194 Sum_probs=62.4
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH-HHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhc-
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR- 342 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i-r~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~- 342 (435)
|++.|+|||||||.|+.+++.++ +.+||+.++ |+++. .+. ........++.. -...+..++...+.
T Consensus 32 ii~~G~PGsGK~T~a~~la~~~~---~~~is~gdllR~ei~-~~t----~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~ 103 (261)
T PLN02459 32 WVFLGCPGVGKGTYASRLSKLLG---VPHIATGDLVREEIK-SSG----PLGAQLKEIVNQGKLVPDEIIFSLLSKRLEA 103 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CcEEeCcHHHHHHHh-ccc----hhHHHHHHHHHcCCccCHHHHHHHHHHHHhc
Confidence 66689999999999999999887 677777554 55442 111 011111111110 00111223322222
Q ss_pred ----CCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhh
Q 013831 343 ----TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 343 ----~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
..+.+|||.---+..+ ...+ .... .-.+++++.+ +.+++|+..|.
T Consensus 104 ~~~~~~~g~iLDGFPRt~~Q-a~~L---e~~~~id~Vi~L~v~d~~l~~Rl~gR~ 154 (261)
T PLN02459 104 GEEEGESGFILDGFPRTVRQ-AEIL---EGVTDIDLVVNLKLREEVLVEKCLGRR 154 (261)
T ss_pred ccccCCceEEEeCCCCCHHH-HHHH---HhcCCCCEEEEEECCHHHHHHHhhccc
Confidence 3467999995443332 2223 3322 2356788887 78999999883
No 102
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.27 E-value=2e-05 Score=72.56 Aligned_cols=123 Identities=16% Similarity=0.062 Sum_probs=64.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCcc--EEEec----c---HHHHHHhccCCCccCCCChHHH-HHHHHHH-HHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLG----T---NLILEQMKVPGLLRKHNYSERF-QCLMGRA-NAIFD 334 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~--~~~ls----~---D~ir~~~~~~G~~~~~~~~~~~-~~~~~~~-~~~~~ 334 (435)
..+|++.|+|||||||+++.|++.+...+ ++.+. + +.+++.+ ..+. .....+.. ..+.... .+.+.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~-~~~~--~~~~~~~~~~~l~~~~r~~~~~ 79 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELL-LNEN--DEPLTDKAEALLFAADRHEHLE 79 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHH-cCCC--ccCCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999998875322 22221 1 2333321 1111 11122111 1111110 12333
Q ss_pred HHHHHHhcCCCeEEEeCCCcCHHHH--------HHHHHHHhc-C-C--cEEEEEECCh-HHHHHHHHHhh
Q 013831 335 VLLSRASRTPRNFIIDQTNVFKSAR--------KRKLRLFVN-F-R--KIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 335 ~ll~~al~~g~~vIlD~Tn~~~~~R--------~~~~~~~~~-~-~--~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
..+..++..+..||+|....+.-.. ..++..+.. . . .-.+|++.++ +++++|+..|.
T Consensus 80 ~~i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~ 149 (195)
T TIGR00041 80 DKIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRG 149 (195)
T ss_pred HHHHHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 4555667789999999532221100 112332221 1 1 2356788876 88999998884
No 103
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.27 E-value=2e-05 Score=74.54 Aligned_cols=127 Identities=17% Similarity=0.258 Sum_probs=85.9
Q ss_pred CCCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhc-cCC--C---ccCCCChHHHHH-----------
Q 013831 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK-VPG--L---LRKHNYSERFQC----------- 324 (435)
Q Consensus 262 ~~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~-~~G--~---~~~~~~~~~~~~----------- 324 (435)
..+.+.+|++-|.||.||||+|..++.+++= -.+|++|.||+-|+ +.+ . +....| .+|+.
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI--~~visTD~IREvlR~ii~~~l~PtLh~Ssy-~Awkalr~~~~~~pii 161 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGI--RSVISTDSIREVLRKIISPELLPTLHTSSY-DAWKALRDPTDENPII 161 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCC--ceeecchHHHHHHHHhCCHHhcchhhHhHH-HHHHHhcCCCCCcchh
Confidence 4456789999999999999999999999873 25789999988775 222 1 000001 22322
Q ss_pred --HHHHH---HHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCc-EEEEEECChHHHHHHHHHhhhhc
Q 013831 325 --LMGRA---NAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRK-IAVVVFPKPEDLKIRSVKRFKEM 394 (435)
Q Consensus 325 --~~~~~---~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~-~~vv~l~~~ee~~~R~~~R~~~~ 394 (435)
..+++ .--++..+++|+..|.++||...|+-|..-+.. .+ +... ..++++.++++...|...|.+..
T Consensus 162 aGF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~--~~-~~n~~~~~l~i~dee~Hr~RF~~R~~~t 234 (299)
T COG2074 162 AGFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEE--AL-GNNVFMFMLYIADEELHRERFYDRIRYT 234 (299)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHh--hh-ccceEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 11222 234567889999999999999999988764432 12 2222 33456666788999999986543
No 104
>PRK06696 uridine kinase; Validated
Probab=98.26 E-value=4.8e-06 Score=78.80 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=32.1
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCCC--ccEEEeccHHH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLI 303 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls~D~i 303 (435)
..+.+|.++|+|||||||+|+.+++.++. ..+++++.|.+
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 35789999999999999999999988742 23667776654
No 105
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.26 E-value=9.4e-06 Score=74.72 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.3
Q ss_pred EEEEEccCCCChhHHHHHHHhhCC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+|++.|++||||||+++.|.+.++
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~ 24 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLG 24 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998754
No 106
>PRK08356 hypothetical protein; Provisional
Probab=98.25 E-value=1.5e-05 Score=73.87 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=58.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH-HHHHhccCCCccCCCCh-H-HH------HHHHHHHH------
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL-ILEQMKVPGLLRKHNYS-E-RF------QCLMGRAN------ 330 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~-ir~~~~~~G~~~~~~~~-~-~~------~~~~~~~~------ 330 (435)
..+|+++|+|||||||+|+.+. +++ +.+|+..+ +++.+...+. ++.|. . .+ +.+.+...
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~-~~g---~~~is~~~~~~~~~~~~~~--~~~f~~~~~~~~~~~~~~~~e~g~~~~~~y 78 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE-EKG---FCRVSCSDPLIDLLTHNVS--DYSWVPEVPFKGEPTRENLIELGRYLKEKY 78 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HCC---CcEEeCCCccccccccccc--ccccccHHHHhhccccccHHHHHHHHHHhc
Confidence 3578999999999999999995 444 44565543 2221111111 11110 0 00 11111111
Q ss_pred --HHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831 331 --AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 331 --~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
..+..++...++....+|||.- -+..+++. +.... ..+|++.++ +++.+|+..|.
T Consensus 79 G~~~~~~~~~~~~~~~~~ividG~-r~~~q~~~----l~~~~-~~vi~l~~~~~~~~~Rl~~R~ 136 (195)
T PRK08356 79 GEDILIRLAVDKKRNCKNIAIDGV-RSRGEVEA----IKRMG-GKVIYVEAKPEIRFERLRRRG 136 (195)
T ss_pred CcHHHHHHHHHHhccCCeEEEcCc-CCHHHHHH----HHhcC-CEEEEEECCHHHHHHHHHhcC
Confidence 0001122112233447999975 55544442 32322 246677776 88999999884
No 107
>PRK13973 thymidylate kinase; Provisional
Probab=98.23 E-value=2.5e-05 Score=73.42 Aligned_cols=123 Identities=17% Similarity=0.100 Sum_probs=68.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEec---------cHHHHHHhccCCCccCCCChHHHHHHHHHHH--HHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG---------TNLILEQMKVPGLLRKHNYSERFQCLMGRAN--AIFD 334 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls---------~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~--~~~~ 334 (435)
..+|++-|++||||||.++.+++.+...++.++. .+.+|+.+. .+. ...+.+.-+.+.-.+. ..+.
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~-~~~--~~~~~~~~~~ll~~a~r~~~~~ 79 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLL-SGA--AELYGPRMEALLFAAARDDHVE 79 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHc-CCC--ccCCCHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999887433232222 234444432 111 0112222111111111 2334
Q ss_pred HHHHHHhcCCCeEEEeCCCcCHHHH--------HHHHHHHhc----CC-cEEEEEECCh-HHHHHHHHHhh
Q 013831 335 VLLSRASRTPRNFIIDQTNVFKSAR--------KRKLRLFVN----FR-KIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 335 ~ll~~al~~g~~vIlD~Tn~~~~~R--------~~~~~~~~~----~~-~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
..+.-++..|..||.|--..+.-.. ..++..+.. .. .-.++++++| +++++|+.+|.
T Consensus 80 ~~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~ 150 (213)
T PRK13973 80 EVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRR 150 (213)
T ss_pred HHHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 4566678899999999743211111 112232221 11 3456788887 88999999885
No 108
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.18 E-value=3.8e-06 Score=77.30 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=29.1
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
||.++|.|||||||+|+.+++.+++ +.+|+.|.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~--~~~i~~Ddf 34 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPN--CCVIHQDDF 34 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCC--CeEEccccc
Confidence 5789999999999999999998853 667888865
No 109
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.18 E-value=3.4e-05 Score=71.41 Aligned_cols=120 Identities=16% Similarity=0.066 Sum_probs=62.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCc--cEEEec-------cHHHHHHhccCCCccCCCChHHHHHH----HHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLG-------TNLILEQMKVPGLLRKHNYSERFQCL----MGRANAI 332 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~--~~~~ls-------~D~ir~~~~~~G~~~~~~~~~~~~~~----~~~~~~~ 332 (435)
..+|++.|++||||||+++.|.+.+... .++... .+.+++.+. +... ...+ +... ..+ ...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~--~~~~--~~~~-~~~~~~~~~~r-~~~ 76 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPGGTPLGEKLRELLL--DPNE--EMDD-KTELLLFYAAR-AQH 76 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCCCChHHHHHHHHHh--cccc--CCCH-HHHHHHHHHHH-HHH
Confidence 4689999999999999999998865321 122210 012222211 1000 1111 1111 111 122
Q ss_pred HHHHHHHHhcCCCeEEEeCCCcCHHHH--------HHHHHHHhc-----CCcEEEEEECCh-HHHHHHHHHhh
Q 013831 333 FDVLLSRASRTPRNFIIDQTNVFKSAR--------KRKLRLFVN-----FRKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 333 ~~~ll~~al~~g~~vIlD~Tn~~~~~R--------~~~~~~~~~-----~~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
+...+..++.+|..||+|-.-.+.-.. ..++..+.. ...-.+|+++++ +++.+|+.+|.
T Consensus 77 ~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~ 149 (205)
T PRK00698 77 LEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARG 149 (205)
T ss_pred HHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 333455566889999999422111000 112222221 123367788876 89999999984
No 110
>PRK08233 hypothetical protein; Provisional
Probab=98.17 E-value=1.6e-05 Score=72.14 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=24.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCc
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEK 293 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~ 293 (435)
..+|.+.|.|||||||+|+.+++.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~ 30 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNS 30 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 5789999999999999999999988643
No 111
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.17 E-value=2.4e-05 Score=72.58 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=32.1
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
.+|.++|.|||||||+++.+.+.++ +.+++.|.+.+++
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g---~~~i~~D~~~~~~ 39 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKG---IPILDADIYAREA 39 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC---CeEeeCcHHHHHH
Confidence 4789999999999999999998755 6788999886553
No 112
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.16 E-value=1.7e-05 Score=71.64 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=32.3
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
+.|+++|+|||||||+|+.+++.++ +..++.|.++...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg---~~~~d~D~~~~~~ 40 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG---YRFVDTDQWLQST 40 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC---CCEEEccHHHHHH
Confidence 4588899999999999999999886 5678889887654
No 113
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=98.14 E-value=1.7e-05 Score=69.25 Aligned_cols=112 Identities=18% Similarity=0.164 Sum_probs=65.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChH-HHHHHHHHHHHHHHHHHHHHhc
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRASR 342 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~ll~~al~ 342 (435)
..+|+|.||+||||||+|-.|.+.+- ++...+|.-|.+|- |..++-.|.. ...+-+.+... .....+.
T Consensus 31 GcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRh-----GLN~DL~F~a~dR~ENIRRige----VaKLFAD 101 (207)
T KOG0635|consen 31 GCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRH-----GLNKDLGFKAEDRNENIRRIGE----VAKLFAD 101 (207)
T ss_pred CcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccc-----ccccccCcchhhhhhhHHHHHH----HHHHHhc
Confidence 56789999999999999998876543 34467888787653 3322223322 11222222221 2222245
Q ss_pred CCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHH
Q 013831 343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS 387 (435)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~ 387 (435)
.|-.-|-.-...++..|+. -+.+...+.+.-||++.| +.|.+|.
T Consensus 102 ag~iciaSlISPYR~dRda-cRel~~~~~FiEvfmdvpl~vcE~RD 146 (207)
T KOG0635|consen 102 AGVICIASLISPYRKDRDA-CRELLPEGDFIEVFMDVPLEVCEARD 146 (207)
T ss_pred cceeeeehhcCchhccHHH-HHHhccCCCeEEEEecCcHHHhhccC
Confidence 6655555555556666665 222322235666788988 8888774
No 114
>PLN02772 guanylate kinase
Probab=98.13 E-value=2.1e-05 Score=79.72 Aligned_cols=132 Identities=14% Similarity=0.151 Sum_probs=67.5
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc--cCCCCh--HHHHHHHHH------------
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL--RKHNYS--ERFQCLMGR------------ 328 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~--~~~~~~--~~~~~~~~~------------ 328 (435)
..++++++|++|+||||++++|.+..+..-...++.- -+..+ .|.. ..|.|. +.++..++.
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshT--TR~pR-~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn 210 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHT--TRAPR-EMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGN 210 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhcccccccccccc--CCCCc-ccccCCceEeeCCHHHHHHHHHhCccceeeeecCc
Confidence 3579999999999999999999887653111111110 01111 1110 011111 112111110
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHH
Q 013831 329 ANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNML 407 (435)
Q Consensus 329 ~~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~ 407 (435)
..-.-.+.++.++++|+.+|+|-. ....+.+.+.. ...+.+++++.+ +++.+|+..| +.. .++.|+++.
T Consensus 211 ~YGTsk~~V~~vl~~Gk~vILdLD---~qGar~Lr~~~--l~~v~IFI~PPSlEeLe~RL~~R----Gte-seE~I~kRL 280 (398)
T PLN02772 211 LYGTSIEAVEVVTDSGKRCILDID---VQGARSVRASS--LEAIFIFICPPSMEELEKRLRAR----GTE-TEEQIQKRL 280 (398)
T ss_pred cccccHHHHHHHHHhCCcEEEeCC---HHHHHHHHHhc--CCeEEEEEeCCCHHHHHHHHHhc----CCC-CHHHHHHHH
Confidence 000122355566789999999963 33333322211 223455555654 8999999988 433 344444444
Q ss_pred hc
Q 013831 408 AN 409 (435)
Q Consensus 408 ~~ 409 (435)
++
T Consensus 281 ~~ 282 (398)
T PLN02772 281 RN 282 (398)
T ss_pred HH
Confidence 33
No 115
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.13 E-value=1.4e-05 Score=73.07 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=30.2
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
+|.++|.|||||||+++.+.+ ++ +.+++.|.+.+++
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g---~~~i~~D~~~~~~ 36 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LG---IPVIDADKIAHEV 36 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CC---CCEEecCHHHHhh
Confidence 478999999999999999988 54 6788889876554
No 116
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.12 E-value=1.1e-05 Score=75.32 Aligned_cols=41 Identities=20% Similarity=0.170 Sum_probs=32.5
Q ss_pred CCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 263 ~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
++...+|.++|++||||||+++.++..++.....+++.|..
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~ 43 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNY 43 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence 34578999999999999999999998776333566777753
No 117
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.10 E-value=3.5e-05 Score=70.83 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=30.6
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
+|.++|.+||||||+++.+.+..+ +.+++.|.+.+++
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~---~~~i~~D~~~~~~ 37 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYH---FPVIDADKIAHQV 37 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC---CeEEeCCHHHHHH
Confidence 478999999999999999988754 6688889885543
No 118
>PTZ00301 uridine kinase; Provisional
Probab=98.08 E-value=1.3e-05 Score=75.21 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=28.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC----CCccEEEeccHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLI 303 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~----~~~~~~~ls~D~i 303 (435)
|.||.+.|.|||||||+|+.+.+.+ ....+.+++.|..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~y 44 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFY 44 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence 6899999999999999999887654 2122446777754
No 119
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.08 E-value=3.4e-05 Score=72.15 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=33.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
.+.+|-+.|.+||||||+|+++...++.....+|+.|..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~Y 45 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDY 45 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecccc
Confidence 467899999999999999999999988555678888865
No 120
>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]
Probab=98.06 E-value=4.2e-05 Score=77.79 Aligned_cols=141 Identities=20% Similarity=0.188 Sum_probs=82.8
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc-----HHHHHHhc-cCCCccCCCCh---HHHHHHHH-HHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-----NLILEQMK-VPGLLRKHNYS---ERFQCLMG-RANAIFD 334 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~-----D~ir~~~~-~~G~~~~~~~~---~~~~~~~~-~~~~~~~ 334 (435)
...+|+|+|+|++|||.++.++.+.+. |..+++ -..++... .... ...|. ..-..+.+ .+..++.
T Consensus 27 ~~~~ivmvglpA~gKt~is~kl~ryl~---w~~~~tk~fn~g~yrr~~~~~~~s--~~ff~p~n~~~~~lr~~~a~~~l~ 101 (438)
T KOG0234|consen 27 SKLVIVMVGLPARGKTYISSKLTRYLN---WLGVNTKVFNVGEYRREAVKKVDS--EPFFLPDNAEASKLRKQLALLALN 101 (438)
T ss_pred CceEEEEecCCccCcchhhhhHHHHHH---hhccccccccHHHHHHHHhccccc--ccccccCChhhhhhhHHHHHHHhh
Confidence 357999999999999999999998765 333322 34444332 1111 11121 11122223 2334555
Q ss_pred HHHHHHh-cCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECC---hHHHHHHHHHhhhhcCC----CCcHHHHHHH
Q 013831 335 VLLSRAS-RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK---PEDLKIRSVKRFKEMGK----EVPADAVNNM 406 (435)
Q Consensus 335 ~ll~~al-~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~---~ee~~~R~~~R~~~~~~----~vp~~vi~~m 406 (435)
.++.... ..|.++|.|+||.+++.|+.++..+.+-..+.+.+++. +..++.+|..-....+. .-.++++..+
T Consensus 102 D~~~~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~~~spdy~~~~~e~a~~df 181 (438)
T KOG0234|consen 102 DLLHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIREVKHVSPDYKGKDQEEALKDF 181 (438)
T ss_pred hHHHHhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhhhhhhcCCCcCCCCHHHHHHHH
Confidence 5665554 58899999999999999998777775223445544432 35677777662222221 2236666666
Q ss_pred Hhcc
Q 013831 407 LANY 410 (435)
Q Consensus 407 ~~~f 410 (435)
.++.
T Consensus 182 l~ri 185 (438)
T KOG0234|consen 182 LKRI 185 (438)
T ss_pred HHHH
Confidence 5543
No 121
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.06 E-value=1.7e-05 Score=74.03 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=33.1
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
.+.+|.++|.|||||||+++.+.+.++...+.+++.|.+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 478999999999999999999999885445677888764
No 122
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.05 E-value=4.6e-05 Score=70.58 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=31.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
+.+|.++|.+||||||+++.+.+ ++ +.+++.|.+.+++
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g---~~~i~~D~~~~~~ 39 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LG---APVIDADAIAHEV 39 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cC---CEEEEecHHHHHH
Confidence 46899999999999999999987 54 6788889876544
No 123
>PRK06761 hypothetical protein; Provisional
Probab=98.03 E-value=2e-05 Score=77.04 Aligned_cols=121 Identities=16% Similarity=0.160 Sum_probs=70.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEE--e-ccHHHH-HHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYIL--L-GTNLIL-EQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~--l-s~D~ir-~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al 341 (435)
..+|+++|+|||||||+++.+++.+....+.+ + ..|... ..+ .+. .......+....+......+.+++.+.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~--~~~--~~~~~eer~~~l~~~~~f~~~l~~~~~ 78 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADY--DGV--ACFTKEEFDRLLSNYPDFKEVLLKNVL 78 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhh--ccc--cCCCHHHHHHHHHhhhHHHHHHHHHHH
Confidence 36899999999999999999999876432211 1 111100 011 111 111123344444443333344666777
Q ss_pred cCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
..|..||+--.-+...+|+.+-...-...++..++ +.| +.+.+|...|-
T Consensus 79 ~~g~~~i~~~~~l~~~yr~~~~~~~~~~~~v~~~h-~~p~e~i~~R~~~rw 128 (282)
T PRK06761 79 KKGDYYLLPYRKIKNEFGDQFSDELFNDISKNDIY-ELPFDKNTELITDRW 128 (282)
T ss_pred HcCCeEEEEehhhhHHHhhhhhhhhcccceeeeee-cCCHHHHHHHHHHHH
Confidence 89999999888787777775332111112455555 666 77888887773
No 124
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.03 E-value=4.4e-06 Score=70.99 Aligned_cols=103 Identities=23% Similarity=0.170 Sum_probs=53.3
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccC---CCc--cCC-CC-hHHHHHHHHHHHHHHHHHHHHHh
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVP---GLL--RKH-NY-SERFQCLMGRANAIFDVLLSRAS 341 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~---G~~--~~~-~~-~~~~~~~~~~~~~~~~~ll~~al 341 (435)
|++.|.|||||||+|+.|.+.+. ... .|.+....... ... ... .. ...+..+..... .... ..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~ 70 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG---DII--RDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSII----QAIR-RM 70 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC---HHH--HHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHH----HHHH-HH
T ss_pred CEEECCCCCCHHHHHHHHHHHHC---cHH--HHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHH----Hhhc-cc
Confidence 68999999999999999999862 111 12222111000 000 000 11 111122222211 1111 34
Q ss_pred cCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEE-EEECCh-HHHHHHHHHhh
Q 013831 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAV-VVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~v-v~l~~~-ee~~~R~~~R~ 391 (435)
..+.++|+|...... .... .... |++.++ +++.+|...|.
T Consensus 71 ~~~~~~iid~~~~~~----------~~~~~~~~~~i~L~~~~e~~~~R~~~R~ 113 (129)
T PF13238_consen 71 NKGRNIIIDGILSNL----------ELERLFDIKFIFLDCSPEELRKRLKKRG 113 (129)
T ss_dssp TTTSCEEEEESSEEE----------CETTEEEESSEEEE--HHHHHHHHHCTT
T ss_pred ccCCcEEEecccchh----------cccccceeeEEEEECCHHHHHHHHHhCC
Confidence 678899999975521 0111 1222 788876 89999999983
No 125
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.02 E-value=0.00012 Score=69.12 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.6
Q ss_pred EEEEEccCCCChhHHHHHHHhhCC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+|++-|.-||||||+++.|++.+.
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~ 24 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLG 24 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999998765
No 126
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.02 E-value=2.2e-05 Score=71.91 Aligned_cols=115 Identities=20% Similarity=0.359 Sum_probs=61.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc--cCCCC--hHHHHHHHHHHH-----------
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL--RKHNY--SERFQCLMGRAN----------- 330 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~--~~~~~--~~~~~~~~~~~~----------- 330 (435)
.++|+|+|++||||||+++.|.+.+|..-...++... +..+ .|.. .+|.| ...++...+.-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TT--R~~r-~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~ 78 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTT--RPPR-PGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNY 78 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEES--S-GG-TTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecc--cCCc-ccccCCcceEEEeechhhhhhccccEEEEeeecchh
Confidence 5789999999999999999999988753212222111 1111 1111 11212 122222211100
Q ss_pred -HHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEE--CChHHHHHHHHHh
Q 013831 331 -AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVF--PKPEDLKIRSVKR 390 (435)
Q Consensus 331 -~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l--~~~ee~~~R~~~R 390 (435)
-.....+..+++.|+.+|+|.. . .. ++.++... ...+||+ ++++++.+|+.+|
T Consensus 79 YGt~~~~i~~~~~~gk~~il~~~-~--~g----~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r 135 (183)
T PF00625_consen 79 YGTSKSAIDKVLEEGKHCILDVD-P--EG----VKQLKKAGFNPIVIFIKPPSPEVLKRRLRRR 135 (183)
T ss_dssp EEEEHHHHHHHHHTTTEEEEEET-H--HH----HHHHHHCTTTEEEEEEEESSHHHHHHHHHTT
T ss_pred hhhccchhhHhhhcCCcEEEEcc-H--HH----HHHHHhcccCceEEEEEccchHHHHHHHhcc
Confidence 0111344556689999999975 2 21 23333323 4555666 3457888888776
No 127
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=97.99 E-value=6.9e-05 Score=69.82 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=30.5
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
.+|.++|.+||||||+++.+.. .+ +.+++.|.+.+++
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g---~~vid~D~i~~~~ 38 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EG---FLIVDADQVARDI 38 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CC---CeEEeCcHHHHHH
Confidence 5789999999999999999986 44 6789999764443
No 128
>PLN02422 dephospho-CoA kinase
Probab=97.99 E-value=0.00011 Score=69.92 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=30.6
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
.+|.++|.+||||||+++.+.+ .+ +.+++.|.+.+++
T Consensus 2 ~~igltG~igsGKstv~~~l~~-~g---~~~idaD~~~~~l 38 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS-SG---IPVVDADKVARDV 38 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CC---CeEEehhHHHHHH
Confidence 4789999999999999999984 44 6789999875544
No 129
>PRK13975 thymidylate kinase; Provisional
Probab=97.97 E-value=0.00036 Score=64.20 Aligned_cols=26 Identities=27% Similarity=0.366 Sum_probs=23.9
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPE 292 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~ 292 (435)
.+|++.|++||||||+|+.+++.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 68999999999999999999998863
No 130
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.94 E-value=0.00011 Score=72.18 Aligned_cols=96 Identities=16% Similarity=0.169 Sum_probs=59.2
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHH-hcC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA-SRT 343 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~a-l~~ 343 (435)
.+++|+++|++||||||+++.+... + +..+ |.+ ....+..+.+ ++... ...
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~~~-g---~~~~--d~~--------------~~~L~~~l~~--------~~~~~~~~~ 56 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALEDL-G---YYCV--DNL--------------PPSLLPKLVE--------LLAQSGGIR 56 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHc-C---CeEE--CCc--------------CHHHHHHHHH--------HHHhcCCCC
Confidence 4679999999999999999999632 3 4443 210 0111111211 11111 124
Q ss_pred CCeEEEeCCCcC--HHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHH
Q 013831 344 PRNFIIDQTNVF--KSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVK 389 (435)
Q Consensus 344 g~~vIlD~Tn~~--~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~ 389 (435)
.-.|++|.++.. .+.+. .++.++..+ .+.+||++++ +++.+|...
T Consensus 57 ~~av~iD~r~~~~~~~~~~-~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~ 105 (288)
T PRK05416 57 KVAVVIDVRSRPFFDDLPE-ALDELRERGIDVRVLFLDASDEVLIRRYSE 105 (288)
T ss_pred CeEEEEccCchhhHHHHHH-HHHHHHHcCCcEEEEEEECCHHHHHHHHhh
Confidence 458999998652 23333 466666544 6778999987 899999875
No 131
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.94 E-value=7.5e-05 Score=74.30 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=30.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~ 306 (435)
...|+++|+|||||||+++.+++.++ +..+..|..+.+
T Consensus 133 ~~~I~l~G~~GsGKStvg~~La~~Lg---~~~id~D~~i~~ 170 (309)
T PRK08154 133 RRRIALIGLRGAGKSTLGRMLAARLG---VPFVELNREIER 170 (309)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcC---CCEEeHHHHHHH
Confidence 46799999999999999999999886 445567765544
No 132
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.91 E-value=7.8e-05 Score=78.58 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=31.6
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
|+++|+|||||||+++.+++.+. +..+++|.++++.
T Consensus 3 I~l~G~~GsGKSTv~~~La~~lg---~~~id~D~~i~~~ 38 (488)
T PRK13951 3 IFLVGMMGSGKSTIGKRVSEVLD---LQFIDMDEEIERR 38 (488)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CeEEECcHHHHHH
Confidence 78999999999999999998886 6778889887664
No 133
>PLN02199 shikimate kinase
Probab=97.87 E-value=8.6e-05 Score=72.62 Aligned_cols=108 Identities=20% Similarity=0.215 Sum_probs=60.1
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc-cCC--CChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL-RKH--NYSERFQCLMGRANAIFDVLLSRASRT 343 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~-~~~--~~~~~~~~~~~~~~~~~~~ll~~al~~ 343 (435)
.-|+|+|.+||||||+++.+++.+. +..+++|.+.++.. .|.. .+. .+.. +...+. ..+.+..+...
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg---~~fIDtD~lIe~~~-~G~sI~eIf~~~GE--~~FR~~----E~e~L~~L~~~ 172 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLG---YTFFDCDTLIEQAM-NGTSVAEIFVHHGE--NFFRGK----ETDALKKLSSR 172 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC---CCEEehHHHHHHHh-cCCCHHHHHHHhCH--HHHHHH----HHHHHHHHHhc
Confidence 4688999999999999999999886 67888898776631 1310 000 0111 111111 11223333233
Q ss_pred CCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHH
Q 013831 344 PRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVK 389 (435)
Q Consensus 344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~ 389 (435)
..+||.. -.-.-.+..-++.+.. -.+||++.+ +++.+|+..
T Consensus 173 -~~~VISt-GGG~V~~~~n~~~L~~---G~vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 173 -YQVVVST-GGGAVIRPINWKYMHK---GISIWLDVPLEALAHRIAA 214 (303)
T ss_pred -CCEEEEC-CCcccCCHHHHHHHhC---CeEEEEECCHHHHHHHHhh
Confidence 3555543 2221222222333332 246899887 999999885
No 134
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.86 E-value=4.4e-05 Score=69.82 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=30.8
Q ss_pred EEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILE 305 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~ 305 (435)
+|.++|.|||||||+|+.++..+. +....+|+.|.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 578999999999999999998753 22367889898754
No 135
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.85 E-value=0.00028 Score=75.55 Aligned_cols=112 Identities=12% Similarity=0.103 Sum_probs=62.0
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCC-ccCCCChH-HHHHHHHHHHHHHHHHHHHHhc
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGL-LRKHNYSE-RFQCLMGRANAIFDVLLSRASR 342 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~-~~~~~~~~-~~~~~~~~~~~~~~~ll~~al~ 342 (435)
....|+|+|.|||||||+++.+++.+. +-.+++|..+++. .|. ..+ -|.. -++..++.- .+.+...+.
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~---~~fiD~D~~ie~~--~g~si~e-if~~~Ge~~FR~~E----~~~l~~~~~ 74 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMR---LPFADADVEIERE--IGMSIPS-YFEEYGEPAFREVE----ADVVADMLE 74 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhC---CCEEEchHHHHHH--HCcCHHH-HHHHHHHHHHHHHH----HHHHHHHHh
Confidence 456799999999999999999999987 5677888766553 231 111 0111 111111111 122322233
Q ss_pred CCCeEEEeC---CCcCHHHHHHHHHH-HhcCCcEEEEEECCh-HHHHHHHHHh
Q 013831 343 TPRNFIIDQ---TNVFKSARKRKLRL-FVNFRKIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 343 ~g~~vIlD~---Tn~~~~~R~~~~~~-~~~~~~~~vv~l~~~-ee~~~R~~~R 390 (435)
.. +.||.. +-..++.|+. +.. +++. -.+||+..+ +++.+|+..+
T Consensus 75 ~~-~~VIs~GGG~v~~~~n~~~-L~~~~~~~--g~vv~L~~~~~~l~~Rl~~~ 123 (542)
T PRK14021 75 DF-DGIFSLGGGAPMTPSTQHA-LASYIAHG--GRVVYLDADPKEAMERANRG 123 (542)
T ss_pred cC-CeEEECCCchhCCHHHHHH-HHHHHhcC--CEEEEEECCHHHHHHHHhCC
Confidence 33 344532 1234444443 322 2332 257889886 8999998643
No 136
>PLN02924 thymidylate kinase
Probab=97.83 E-value=0.00027 Score=66.81 Aligned_cols=119 Identities=17% Similarity=0.093 Sum_probs=63.6
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCcc--EEEec-----c---HHHHHHhccCCCccCCCChHH-HHHHHHHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLG-----T---NLILEQMKVPGLLRKHNYSER-FQCLMGRANAIF 333 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~--~~~ls-----~---D~ir~~~~~~G~~~~~~~~~~-~~~~~~~~~~~~ 333 (435)
...+|++.|++||||||.++.+++.+.... ++.+. + ..+++.+. +. . ...+. ...+....+...
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~--~~-~--~~~~~~~~llf~adR~~~ 89 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLS--NK-S--QLDDRAIHLLFSANRWEK 89 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHh--CC-C--CCCHHHHHHHHHHHHHHH
Confidence 367999999999999999999998775322 12211 1 12333221 11 0 11111 111111111111
Q ss_pred HHHHHHHhcCCCeEEEeCCCcCHHHH-------HHHHHHHhcC-C-cEEEEEECCh-HHHHHHHH
Q 013831 334 DVLLSRASRTPRNFIIDQTNVFKSAR-------KRKLRLFVNF-R-KIAVVVFPKP-EDLKIRSV 388 (435)
Q Consensus 334 ~~ll~~al~~g~~vIlD~Tn~~~~~R-------~~~~~~~~~~-~-~~~vv~l~~~-ee~~~R~~ 388 (435)
...+..+++.|..||+|.-..+.-.. ..++..+... . +-.+++++.+ +++++|..
T Consensus 90 ~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~ 154 (220)
T PLN02924 90 RSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGG 154 (220)
T ss_pred HHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhc
Confidence 23466778999999999865532111 1223333322 1 3356788876 88888854
No 137
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.80 E-value=0.00046 Score=60.97 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=78.8
Q ss_pred CCCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhc----cC--CCccCC---CChHH-----HHHHHH
Q 013831 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK----VP--GLLRKH---NYSER-----FQCLMG 327 (435)
Q Consensus 262 ~~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~----~~--G~~~~~---~~~~~-----~~~~~~ 327 (435)
...+.++|++-|.|-||||++|..+..-..+ .|..|..|.+.+.+- .. |...+. ..... ...+.+
T Consensus 19 g~~~griVlLNG~~saGKSSiA~A~Q~~~a~-pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e 97 (205)
T COG3896 19 GMPEGRIVLLNGGSSAGKSSIALAFQDLAAE-PWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILE 97 (205)
T ss_pred CCCCceEEEecCCCccchhHHHHHHHHHhhc-chhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHH
Confidence 3445799999999999999999999865432 388899998876542 11 210000 00001 122344
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 013831 328 RANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 328 ~~~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R 390 (435)
.+....+..|...+..|.+||.|+.-.++..--.-++.+..+ ++.+|=+.+| |+..+|-.+|
T Consensus 98 ~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~-~v~~VGV~~p~E~~~~Re~rr 160 (205)
T COG3896 98 LAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEGC-RVWMVGVHVPDEEGARRELRR 160 (205)
T ss_pred HHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhCC-ceEEEEeeccHHHHHHHHhhc
Confidence 433334445666678999999999877644333323333332 6777777777 7777776666
No 138
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=97.79 E-value=0.00035 Score=65.41 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=30.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
+.+|.++|.+||||||+++.+.. ++ +.+++.|.+.+++
T Consensus 5 ~~~igitG~igsGKSt~~~~l~~-~g---~~v~d~D~i~~~~ 42 (208)
T PRK14731 5 PFLVGVTGGIGSGKSTVCRFLAE-MG---CELFEADRVAKEL 42 (208)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-CC---CeEEeccHHHHHH
Confidence 46788999999999999999986 43 6788888665443
No 139
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.79 E-value=0.00012 Score=67.64 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=30.6
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir 304 (435)
||.++|++||||||+++.+...+++....+++.|.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence 5789999999999999999988754447788888754
No 140
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.78 E-value=8.8e-05 Score=70.14 Aligned_cols=36 Identities=22% Similarity=0.145 Sum_probs=27.9
Q ss_pred EEEEEccCCCChhHHHHHHHhhCC----CccEEEeccHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLI 303 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~----~~~~~~ls~D~i 303 (435)
+|-++|++||||||+|+.++..+. +..+.+|+.|..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 467899999999999999987762 234667777754
No 141
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.75 E-value=0.00011 Score=64.23 Aligned_cols=102 Identities=25% Similarity=0.305 Sum_probs=54.1
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNFI 348 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~vI 348 (435)
|+++|-||.||||++.++++...- .++-+| |.+++. .+... |...|+-..-.- ..+...++-++..| ..|
T Consensus 10 ILvtGTPG~GKstl~~~lae~~~~-~~i~is-d~vkEn-~l~~g-----yDE~y~c~i~DE-dkv~D~Le~~m~~G-g~I 79 (176)
T KOG3347|consen 10 ILVTGTPGTGKSTLAERLAEKTGL-EYIEIS-DLVKEN-NLYEG-----YDEEYKCHILDE-DKVLDELEPLMIEG-GNI 79 (176)
T ss_pred EEEeCCCCCCchhHHHHHHHHhCC-ceEehh-hHHhhh-cchhc-----ccccccCccccH-HHHHHHHHHHHhcC-CcE
Confidence 788999999999999999987762 255554 444433 12211 122221000000 01112334444443 455
Q ss_pred EeC--CCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831 349 IDQ--TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 349 lD~--Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
+|- +-+.++ +| --.||++.+| +.+..|++.|.
T Consensus 80 VDyHgCd~Fpe---rw--------fdlVvVLr~~~s~LY~RL~sRg 114 (176)
T KOG3347|consen 80 VDYHGCDFFPE---RW--------FDLVVVLRTPNSVLYDRLKSRG 114 (176)
T ss_pred EeecccCccch---hh--------eeEEEEEecCchHHHHHHHHcC
Confidence 664 222211 01 1235667888 89999999993
No 142
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.74 E-value=0.00048 Score=64.32 Aligned_cols=39 Identities=18% Similarity=0.114 Sum_probs=31.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
+..|.++|.+||||||+++.+.+.++ +.+++.|.+.+++
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~lg---~~vidaD~i~~~l 44 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKLN---LNVVCADTISREI 44 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHcC---CeEEeccHHHHHH
Confidence 46799999999999999999998765 5578888775544
No 143
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=97.72 E-value=0.00017 Score=66.90 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=28.5
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
+|.++|.+||||||+++.+.. .+ +.+++.|.+-+++
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g---~~~i~~D~i~~~~ 36 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LG---AFGISADRLAKRY 36 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CC---CEEEecchHHHHH
Confidence 578999999999999998865 43 6778888775443
No 144
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=97.72 E-value=0.00026 Score=67.86 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=31.8
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
.+|-++|-.||||||+++.+.+.++ +.+++.|.+-+++
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G---~~viDaD~iar~l 39 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHH---IEVIDADLVVREL 39 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CeEEehHHHHHHH
Confidence 5788999999999999999987655 6789999875544
No 145
>PLN02842 nucleotide kinase
Probab=97.67 E-value=0.00036 Score=73.19 Aligned_cols=32 Identities=38% Similarity=0.470 Sum_probs=26.4
Q ss_pred EEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831 270 MMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (435)
Q Consensus 270 im~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir 304 (435)
|+.|+|||||||.|+.+++.++ +.+|+++++.
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg---~~hIs~gdLL 32 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFG---LVHISTGDLL 32 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhC---CCEEEccHHH
Confidence 5899999999999999999887 5667665543
No 146
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.65 E-value=0.00024 Score=63.81 Aligned_cols=101 Identities=23% Similarity=0.209 Sum_probs=54.1
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRNF 347 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~v 347 (435)
+|+++|.||.||||++++|. .++-+ ++.+ .++..+.+. ...+ .+.++...-... .++..++..+ ...+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~-~i~l--~el~~e~~~---~~~~--de~r~s~~vD~d-~~~~~le~~~-~~~~~ 70 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYK-VIEL--NELAKENGL---YTEY--DELRKSVIVDVD-KLRKRLEELL-REGSG 70 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCc-eeeH--HHHHHhcCC---eecc--CCccceEEeeHH-HHHHHHHHHh-ccCCe
Confidence 58899999999999999999 65521 3444 344454432 1111 111100000000 1112232222 55688
Q ss_pred EEeCCCcCHHHHHHHHHHHhcCCcEEEEEECC-hHHHHHHHHHh
Q 013831 348 IIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK-PEDLKIRSVKR 390 (435)
Q Consensus 348 IlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~-~ee~~~R~~~R 390 (435)
|+|. |+. .++.. .=.+|++.+ |+.+.+|++.|
T Consensus 71 Ivd~-H~~--------hl~~~--~dlVvVLR~~p~~L~~RLk~R 103 (180)
T COG1936 71 IVDS-HLS--------HLLPD--CDLVVVLRADPEVLYERLKGR 103 (180)
T ss_pred Eeec-hhh--------hcCCC--CCEEEEEcCCHHHHHHHHHHc
Confidence 8887 331 11221 123456676 59999999999
No 147
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.62 E-value=0.00067 Score=63.18 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=30.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE 305 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~ 305 (435)
+.+|-++|-|||||||+|+.+.+ .+ +.+++.|.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G---~~vidaD~v~r 37 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LG---FPVIDADDVAR 37 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cC---CeEEEccHHHH
Confidence 57899999999999999999988 54 67888887755
No 148
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.62 E-value=6.6e-05 Score=69.39 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=27.1
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCcc------EEEeccHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKR------YILLGTNL 302 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~------~~~ls~D~ 302 (435)
||-++|+|||||||+|+.+...++... ...++.|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~ 41 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDD 41 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecc
Confidence 688999999999999999998776321 34566654
No 149
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.62 E-value=0.00018 Score=62.82 Aligned_cols=24 Identities=17% Similarity=0.444 Sum_probs=21.6
Q ss_pred EEEEEccCCCChhHHHHHHHhhCC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+|+++|++||||||+++.+++.++
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 478899999999999999998865
No 150
>PLN02165 adenylate isopentenyltransferase
Probab=97.62 E-value=0.00036 Score=69.58 Aligned_cols=35 Identities=17% Similarity=0.375 Sum_probs=30.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
..+|+++|++||||||+|..++..++ ..+||.|.+
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~---~eIIsaDs~ 77 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFP---SEIINSDKM 77 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcC---CceecCChh
Confidence 45899999999999999999999987 467888875
No 151
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.61 E-value=0.00048 Score=63.90 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=24.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~ 292 (435)
..+|++.|+-|+||||+|+.|++.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~ 30 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGF 30 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCC
Confidence 468999999999999999999999884
No 152
>PRK07667 uridine kinase; Provisional
Probab=97.60 E-value=0.00096 Score=61.68 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=30.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC--ccEEEeccHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLI 303 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls~D~i 303 (435)
..+|.|+|+|||||||+|+.+.+.+.. ....+++.|.+
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 478999999999999999999887532 23667888864
No 153
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.59 E-value=0.00087 Score=63.24 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=29.1
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir 304 (435)
.+|.+.|++||||||+++.+++.++ +..++++.+.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~---~~~~~~g~~~ 37 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG---YAYLDSGAMY 37 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CceeeCchHH
Confidence 4788999999999999999999887 5566776554
No 154
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=97.58 E-value=0.00078 Score=59.82 Aligned_cols=62 Identities=18% Similarity=0.265 Sum_probs=43.5
Q ss_pred HHHHhcCCCeEEEeCCCcCHHHHHHHHHHHh-cCCcEEEEEECC-hHHHHHHHHHhhhhcCCCCcHHHHHHHHhc
Q 013831 337 LSRASRTPRNFIIDQTNVFKSARKRKLRLFV-NFRKIAVVVFPK-PEDLKIRSVKRFKEMGKEVPADAVNNMLAN 409 (435)
Q Consensus 337 l~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~-~~~~~~vv~l~~-~ee~~~R~~~R~~~~~~~vp~~vi~~m~~~ 409 (435)
|..-+..|..||+..+ |. .+-.++ .|....+|.+.. |+.+.+|+.+| |+.-.+++..++...
T Consensus 87 Id~wl~~G~vvl~NgS------Ra-~Lp~arrry~~Llvv~ita~p~VLaqRL~~R----GREs~eeI~aRL~R~ 150 (192)
T COG3709 87 IDLWLAAGDVVLVNGS------RA-VLPQARRRYPQLLVVCITASPEVLAQRLAER----GRESREEILARLARA 150 (192)
T ss_pred HHHHHhCCCEEEEecc------Hh-hhHHHHHhhhcceeEEEecCHHHHHHHHHHh----ccCCHHHHHHHHHhh
Confidence 4445689999998764 22 222232 355677777776 49999999999 777778888888653
No 155
>PRK13974 thymidylate kinase; Provisional
Probab=97.53 E-value=0.0017 Score=60.90 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=24.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~ 292 (435)
.++|++.|++||||||.++.+++.++.
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~ 29 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPS 29 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 478999999999999999999987753
No 156
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.51 E-value=0.00042 Score=58.85 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=27.5
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
|++.|+||+||||+|+.+++.+. ..++.++...+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~-~~~~~i~~~~~ 34 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG-FPFIEIDGSEL 34 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT-SEEEEEETTHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcc-ccccccccccc
Confidence 68999999999999999999986 33566665554
No 157
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=97.51 E-value=0.0017 Score=59.35 Aligned_cols=116 Identities=20% Similarity=0.161 Sum_probs=59.0
Q ss_pred EccCCCChhHHHHHHHhhCCCccEE-Eecc--------HHHHHHhccCCCccCCCChHH-HHHHHHHHH-HHHHHHHHHH
Q 013831 272 VGLPASGKTTWAEKWVKDHPEKRYI-LLGT--------NLILEQMKVPGLLRKHNYSER-FQCLMGRAN-AIFDVLLSRA 340 (435)
Q Consensus 272 ~GlPGSGKST~A~~l~~~~~~~~~~-~ls~--------D~ir~~~~~~G~~~~~~~~~~-~~~~~~~~~-~~~~~ll~~a 340 (435)
=|+.||||||.++.+.+.+...... .+.. +.+++.+. + .....+. ...+..... ..+...+..+
T Consensus 2 EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~--~---~~~~~~~~~~~l~~a~r~~~~~~~I~~~ 76 (186)
T PF02223_consen 2 EGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLR--S---ESELSPEAEALLFAADRAWHLARVIRPA 76 (186)
T ss_dssp EESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHH--T---SSTCGHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHh--c---ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999998876543332 2211 12232221 1 1112221 111111111 2334456677
Q ss_pred hcCCCeEEEeCCCcCHHHH--------HHHHHHHh-cC---CcEEEEEECC-hHHHHHHHHHhhh
Q 013831 341 SRTPRNFIIDQTNVFKSAR--------KRKLRLFV-NF---RKIAVVVFPK-PEDLKIRSVKRFK 392 (435)
Q Consensus 341 l~~g~~vIlD~Tn~~~~~R--------~~~~~~~~-~~---~~~~vv~l~~-~ee~~~R~~~R~~ 392 (435)
+++|..||+|---.+.-.. ..++..+. .. .+=.+++++. |+++.+|...|..
T Consensus 77 l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~ 141 (186)
T PF02223_consen 77 LKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGE 141 (186)
T ss_dssp HHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSS
T ss_pred HcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCc
Confidence 8899999999521111100 01121111 11 2223456666 4999999999954
No 158
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=97.50 E-value=0.00053 Score=61.22 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=55.6
Q ss_pred CCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCC-ccCCCChH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEEeC-
Q 013831 275 PASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGL-LRKHNYSE-RFQCLMGRANAIFDVLLSRASRTPRNFIIDQ- 351 (435)
Q Consensus 275 PGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~-~~~~~~~~-~~~~~~~~~~~~~~~ll~~al~~g~~vIlD~- 351 (435)
|||||||+++.+++.+. +-.++.|..+.+. .|. ..+ -+.. -++...+ .-.+++...+... +.||..
T Consensus 1 ~GsGKStvg~~lA~~L~---~~fiD~D~~i~~~--~g~si~~-i~~~~G~~~fr~----~E~~~l~~l~~~~-~~VIa~G 69 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLG---RPFIDLDDEIEER--TGMSISE-IFAEEGEEAFRE----LESEALRELLKEN-NCVIACG 69 (158)
T ss_dssp TTSSHHHHHHHHHHHHT---SEEEEHHHHHHHH--HTSHHHH-HHHHHHHHHHHH----HHHHHHHHHHCSS-SEEEEE-
T ss_pred CCCcHHHHHHHHHHHhC---CCccccCHHHHHH--hCCcHHH-HHHcCChHHHHH----HHHHHHHHHhccC-cEEEeCC
Confidence 79999999999999987 6778888876553 231 000 0111 0111111 1122344444554 555544
Q ss_pred --CCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831 352 --TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 352 --Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
+-..++.|+ .++. .-.+||++.+ +++.+|+..+.
T Consensus 70 GG~~~~~~~~~----~L~~--~g~vI~L~~~~~~l~~Rl~~~~ 106 (158)
T PF01202_consen 70 GGIVLKEENRE----LLKE--NGLVIYLDADPEELAERLRARD 106 (158)
T ss_dssp TTGGGSHHHHH----HHHH--HSEEEEEE--HHHHHHHHHHHC
T ss_pred CCCcCcHHHHH----HHHh--CCEEEEEeCCHHHHHHHHhCCC
Confidence 334444333 3332 3457888776 89999998874
No 159
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.48 E-value=0.0004 Score=73.77 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=30.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
...+|.++|++||||||+|+.++..++. ..+|+.|..
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp~--vgvIsmDdy 100 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMPS--IAVISMDNY 100 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCCC--cEEEEEcce
Confidence 4679999999999999999999988864 456666754
No 160
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.47 E-value=0.00045 Score=68.55 Aligned_cols=34 Identities=29% Similarity=0.326 Sum_probs=30.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ 302 (435)
..+|+++|++||||||+|..+++.++ ..+||.|.
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~---~~iis~Ds 37 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLN---GEIISADS 37 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCC---CcEEeccc
Confidence 57999999999999999999999987 46788887
No 161
>PLN02348 phosphoribulokinase
Probab=97.42 E-value=0.00085 Score=68.23 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=24.7
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..+.||-+.|.|||||||+|++|...++
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999999998774
No 162
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=97.40 E-value=0.0023 Score=58.63 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=29.9
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
+|-++|..||||||+++.+.+ ++ +.+++.|.+-.++
T Consensus 2 iIglTG~igsGKStv~~~l~~-~G---~~vidaD~i~~~l 37 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE-LG---FPVIDADEIAHEL 37 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-TT----EEEEHHHHHHHC
T ss_pred EEEEECCCcCCHHHHHHHHHH-CC---CCEECccHHHHHH
Confidence 678999999999999999988 54 7899999876554
No 163
>PRK05439 pantothenate kinase; Provisional
Probab=97.40 E-value=0.00058 Score=67.72 Aligned_cols=42 Identities=21% Similarity=0.075 Sum_probs=32.5
Q ss_pred CCCcceEEEEEccCCCChhHHHHHHHhhCC----CccEEEeccHHH
Q 013831 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLI 303 (435)
Q Consensus 262 ~~~~~~liim~GlPGSGKST~A~~l~~~~~----~~~~~~ls~D~i 303 (435)
....+.+|.+.|.|||||||+|+.+...+. +..+.+|+.|.+
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 334578999999999999999999987543 234678888865
No 164
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.38 E-value=0.00018 Score=55.10 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=24.4
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls 299 (435)
+|+++|.|||||||+++.+.+.+.+.++..++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 47889999999999999999985222355553
No 165
>PRK09087 hypothetical protein; Validated
Probab=97.37 E-value=0.00051 Score=65.23 Aligned_cols=134 Identities=19% Similarity=0.203 Sum_probs=69.4
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhc--c-CCC--ccCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK--V-PGL--LRKHNYSERFQCLMGRANAIFDVLLSRAS 341 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~--~-~G~--~~~~~~~~~~~~~~~~~~~~~~~ll~~al 341 (435)
..++++|.+||||||+++.+++... +..++.+.+..... + .+. +.+..+.. .. +..+-.++..+.
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~-~~------~~~lf~l~n~~~ 114 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSD---ALLIHPNEIGSDAANAAAEGPVLIEDIDAGG-FD------ETGLFHLINSVR 114 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcC---CEEecHHHcchHHHHhhhcCeEEEECCCCCC-CC------HHHHHHHHHHHH
Confidence 4579999999999999999987754 44565543222110 0 000 00000100 00 112334555666
Q ss_pred cCCCeEEEeCCCcCHHHHHHHHHHHhc-CCcEEEEEECCh--HHHHHHHHHhhhhcCCCCcHHHHHHHHhccc
Q 013831 342 RTPRNFIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNNMLANYV 411 (435)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~~~~vv~l~~~--ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe 411 (435)
+.|+.+|+-++...+.... ....++. ...-.++-++.+ ++..+-++++....+-.++++++.-+.+++.
T Consensus 115 ~~g~~ilits~~~p~~~~~-~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~ 186 (226)
T PRK09087 115 QAGTSLLMTSRLWPSSWNV-KLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRME 186 (226)
T ss_pred hCCCeEEEECCCChHHhcc-ccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Confidence 7888888877633222111 1111111 111245566554 3333333333333466789999988887765
No 166
>PRK13976 thymidylate kinase; Provisional
Probab=97.31 E-value=0.0046 Score=58.01 Aligned_cols=118 Identities=19% Similarity=0.109 Sum_probs=61.9
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCc-c--EEEecc--------HHHHHHhccCCCccCCCChHHHHHHHHHH--HHHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEK-R--YILLGT--------NLILEQMKVPGLLRKHNYSERFQCLMGRA--NAIFD 334 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~-~--~~~ls~--------D~ir~~~~~~G~~~~~~~~~~~~~~~~~~--~~~~~ 334 (435)
+|++-|+.||||||.++.+++.+... + -+++.. ..||+.+ .+. . ...+.-+.+.=.+ .+.+.
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l--~~~--~-~~~~~~~~llf~a~R~~~~~ 76 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLL--LSL--K-NLDKISELLLFIAMRREHFV 76 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHH--cCC--c-CCCHHHHHHHHHHHHHHHHH
Confidence 68899999999999999998776532 1 122221 2233322 110 0 1111111111111 12234
Q ss_pred HHHHHHhcCCCeEEEeCCCcCHHHHH--------HHHHHHhcC----CcEEEEEECCh-HHHHHHHHHh
Q 013831 335 VLLSRASRTPRNFIIDQTNVFKSARK--------RKLRLFVNF----RKIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 335 ~ll~~al~~g~~vIlD~Tn~~~~~R~--------~~~~~~~~~----~~~~vv~l~~~-ee~~~R~~~R 390 (435)
..+.-+++.|..||.|--..+.-..+ .++..+... .+=.+++++.+ +++++|..+|
T Consensus 77 ~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~ 145 (209)
T PRK13976 77 KVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKN 145 (209)
T ss_pred HHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhccc
Confidence 45667789999999997433221111 123322221 12345678876 8888887654
No 167
>PRK07933 thymidylate kinase; Validated
Probab=97.31 E-value=0.0085 Score=56.33 Aligned_cols=120 Identities=19% Similarity=0.141 Sum_probs=63.4
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCcc--EEEec---------cHHHHHHhccCCCccCCCChHH-HHHHH--HHHHHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKR--YILLG---------TNLILEQMKVPGLLRKHNYSER-FQCLM--GRANAIF 333 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~--~~~ls---------~D~ir~~~~~~G~~~~~~~~~~-~~~~~--~~~~~~~ 333 (435)
+|.+.|+-||||||.++.|.+.+...+ ++.+. .+.+++.+. +........+. ...+. .++. .+
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~--~~~~~~~~~~~~~~llf~a~R~~-~~ 78 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALH--GRHGDLADSVYAMATLFALDRAG-AR 78 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHc--CCCCcccCCHHHHHHHHhhhhhh-hH
Confidence 789999999999999999998765321 22111 123443331 21001000111 11111 1111 12
Q ss_pred HHHHHHHhcCCCeEEEeCCCcCHHH----H---------HHHHHHHhc--CC---cEEEEEECCh-HHHHHHHHHhh
Q 013831 334 DVLLSRASRTPRNFIIDQTNVFKSA----R---------KRKLRLFVN--FR---KIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 334 ~~ll~~al~~g~~vIlD~Tn~~~~~----R---------~~~~~~~~~--~~---~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
..+.-+++.|..||.|---.+.-. + ..++..+.. .. +-.+++++.+ ++.++|..+|.
T Consensus 79 -~~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~ 154 (213)
T PRK07933 79 -DELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRA 154 (213)
T ss_pred -HHHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhc
Confidence 235566789999999974332211 1 123333332 11 2356788876 89999998884
No 168
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.30 E-value=0.0008 Score=71.03 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=33.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
..+|.+.|++||||||+|+.+++.++ +..+++|.+.+.+
T Consensus 284 ~~ii~i~G~sgsGKst~a~~la~~l~---~~~~d~g~~YR~~ 322 (512)
T PRK13477 284 QPIIAIDGPAGAGKSTVTRAVAKKLG---LLYLDTGAMYRAV 322 (512)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC---CeEecCCceehHH
Confidence 57899999999999999999999997 7888887765543
No 169
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.25 E-value=0.00091 Score=60.68 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=25.8
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~ 300 (435)
++++.|.|||||||+|.+++..++. .++.|++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-~~~~iat 34 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-QVLYIAT 34 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-CcEeCcC
Confidence 6899999999999999999988653 2455555
No 170
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.25 E-value=0.0022 Score=60.82 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=24.8
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..+.++.+.|++||||||+++.++..++
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4578999999999999999999987765
No 171
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.25 E-value=0.003 Score=59.66 Aligned_cols=142 Identities=11% Similarity=0.047 Sum_probs=67.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~ 343 (435)
...++++|.||+||||+|+.++... .+..++.++...+......... ....+-+..+.+-...+..+..++......
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~liiDdi~~l~~~~~~~L~~~~~~~~~~ 120 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAFDFDPE-AELYAVDDVERLDDAQQIALFNLFNRVRAH 120 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHHhhccc-CCEEEEeChhhcCchHHHHHHHHHHHHHHc
Confidence 4578999999999999999998764 2233666766544332210000 000000111111111122333445444455
Q ss_pred CCe-EEEeCCCcCHHHHHHHHHHHh-cCCcEEEEEECCh--HHHHHHHHHhhhhcCCCCcHHHHHHHHhcc
Q 013831 344 PRN-FIIDQTNVFKSARKRKLRLFV-NFRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNNMLANY 410 (435)
Q Consensus 344 g~~-vIlD~Tn~~~~~R~~~~~~~~-~~~~~~vv~l~~~--ee~~~R~~~R~~~~~~~vp~~vi~~m~~~f 410 (435)
+.. +|+-.+ ..+.... +...+. .......+.++.+ ++....+.+-..+.+-.++++++..+.+.|
T Consensus 121 ~~~~vl~~~~-~~~~~~~-l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~ 189 (227)
T PRK08903 121 GQGALLVAGP-AAPLALP-LREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHF 189 (227)
T ss_pred CCcEEEEeCC-CCHHhCC-CCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc
Confidence 664 555444 3332211 111111 1112245667664 333333333222235668888988888754
No 172
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=97.22 E-value=0.0019 Score=66.40 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=31.0
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
..|.++|.+||||||+++.|.+ ++ +.+++.|.+..++
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G---~~vidaD~i~~~l 38 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LG---AVVVDADVLAREV 38 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CC---CeEEehHHHHHHH
Confidence 4689999999999999999987 44 7789999876553
No 173
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.20 E-value=0.004 Score=59.39 Aligned_cols=137 Identities=12% Similarity=0.034 Sum_probs=68.2
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHH-------HHhc-----cCCCccCCCChHHHHHHHHHHHHH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLIL-------EQMK-----VPGLLRKHNYSERFQCLMGRANAI 332 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir-------~~~~-----~~G~~~~~~~~~~~~~~~~~~~~~ 332 (435)
..++++|+||+||||+++.++.... +..+..++.+... +.+. +..+.......+.|+. .
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~dlliiDdi~~~~~~~~~~~-------~ 118 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEM-------A 118 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhhCCEEEEeChhhhcCCHHHHH-------H
Confidence 4689999999999999998775422 2234445544321 1110 0000000000122221 2
Q ss_pred HHHHHHHHhcCCC-eEEEeCCCcCHHHHHHHHHHHhc-CCcEEEEEECCh--HHHHHHHHHhhhhcCCCCcHHHHHHHHh
Q 013831 333 FDVLLSRASRTPR-NFIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNNMLA 408 (435)
Q Consensus 333 ~~~ll~~al~~g~-~vIlD~Tn~~~~~R~~~~~~~~~-~~~~~vv~l~~~--ee~~~R~~~R~~~~~~~vp~~vi~~m~~ 408 (435)
+..++....+.|+ .+|+-.++. +..-......++. ..--.++-+..+ ++.++-++++....+-.++++++.-+.+
T Consensus 119 lf~l~n~~~e~g~~~li~ts~~~-p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~ 197 (235)
T PRK08084 119 IFDLYNRILESGRTRLLITGDRP-PRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLK 197 (235)
T ss_pred HHHHHHHHHHcCCCeEEEeCCCC-hHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2234445556665 677766543 3221111122222 111134555443 5555555444444466789999998888
Q ss_pred ccc
Q 013831 409 NYV 411 (435)
Q Consensus 409 ~fe 411 (435)
+++
T Consensus 198 ~~~ 200 (235)
T PRK08084 198 RLD 200 (235)
T ss_pred hhc
Confidence 765
No 174
>PRK07429 phosphoribulokinase; Provisional
Probab=97.19 E-value=0.0057 Score=61.27 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=30.6
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
.+-+|-++|.+||||||+++.++..++.....+++.|.+
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~ 45 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY 45 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc
Confidence 467899999999999999999998876433445666654
No 175
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.15 E-value=0.0008 Score=62.60 Aligned_cols=155 Identities=14% Similarity=0.165 Sum_probs=79.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH--HHhcc-CCCccC--C-----CC-hHHH----HHHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL--EQMKV-PGLLRK--H-----NY-SERF----QCLMGRAN 330 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir--~~~~~-~G~~~~--~-----~~-~~~~----~~~~~~~~ 330 (435)
++|++++|++|+|||.+|-.+++.++ +.+|+.|.+. .++.+ .|.+.. . -| ..+. ....+.+.
T Consensus 1 M~v~~i~GpT~tGKt~~ai~lA~~~g---~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~a~ea~ 77 (233)
T PF01745_consen 1 MKVYLIVGPTGTGKTALAIALAQKTG---APVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIINAEEAH 77 (233)
T ss_dssp -EEEEEE-STTSSHHHHHHHHHHHH-----EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S--HHHHH
T ss_pred CcEEEEECCCCCChhHHHHHHHHHhC---CCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCCcCHHHHH
Confidence 47899999999999999999999987 5677778542 22221 221100 0 01 1100 00111122
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhc--CC----cEEEEEECCh--HHHHHHHHHhhhhc--CCCCcH
Q 013831 331 AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN--FR----KIAVVVFPKP--EDLKIRSVKRFKEM--GKEVPA 400 (435)
Q Consensus 331 ~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~--~~----~~~vv~l~~~--ee~~~R~~~R~~~~--~~~vp~ 400 (435)
..+...+.. ...++.+|+....++ ++..+.. |- ...+.+++.+ +..+.|..+|.++- ...-..
T Consensus 78 ~~Li~~v~~-~~~~~~~IlEGGSIS------Ll~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~p~~~~~ 150 (233)
T PF01745_consen 78 ERLISEVNS-YSAHGGLILEGGSIS------LLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLRPDSSGP 150 (233)
T ss_dssp HHHHHHHHT-TTTSSEEEEEE--HH------HHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS--SSS-
T ss_pred HHHHHHHHh-ccccCceEEeCchHH------HHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcCCCCCCC
Confidence 222223322 245889999998664 3444432 21 4566666553 67888988887542 223336
Q ss_pred HHHHHHHhcccCCCCCCCCCCCcccceecc
Q 013831 401 DAVNNMLANYVLPVNKDTPGSDELFDQRRG 430 (435)
Q Consensus 401 ~vi~~m~~~fe~P~~~~~~~~~e~Fd~i~~ 430 (435)
..+..+..-|.-|...-......||+.|..
T Consensus 151 Sll~EL~~lW~~p~~r~~ledIdGyr~~i~ 180 (233)
T PF01745_consen 151 SLLEELVALWNDPALRPILEDIDGYRYIIR 180 (233)
T ss_dssp -HHHHHHHHHTSTTHHHHHTTSTTHHHHHH
T ss_pred cHHHHHHHHHhCccccchHhhhccHHHHHH
Confidence 788888888887765444455666665543
No 176
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.13 E-value=0.00096 Score=60.23 Aligned_cols=35 Identities=34% Similarity=0.461 Sum_probs=27.3
Q ss_pred EEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL 302 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ 302 (435)
+++++|+|||||||+++.++..+. +.++.+++.|.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 688999999999999999876532 23466777773
No 177
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.08 E-value=0.0023 Score=66.11 Aligned_cols=41 Identities=29% Similarity=0.259 Sum_probs=32.1
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLIL 304 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir 304 (435)
..+.+|+|+|++||||||.+.+++..+. ++++.+++.|..|
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 3478999999999999999999986542 3347788888643
No 178
>PHA00729 NTP-binding motif containing protein
Probab=97.05 E-value=0.0055 Score=57.95 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
..-|++.|.||+||||+|..++..+
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999875
No 179
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=97.04 E-value=0.012 Score=55.03 Aligned_cols=122 Identities=20% Similarity=0.181 Sum_probs=66.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccE-EEecc--------HHHHHHhccCCCccCCCChHHHH-HHHHHHH-HHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRY-ILLGT--------NLILEQMKVPGLLRKHNYSERFQ-CLMGRAN-AIFD 334 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~-~~ls~--------D~ir~~~~~~G~~~~~~~~~~~~-~~~~~~~-~~~~ 334 (435)
..+|.+=|+=||||||.++.+.+.+....+ +++.. ..||+.+ +.+. ....+.-+ .+....+ +.+.
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~l-l~~~---~~~~~~~e~lLfaadR~~h~~ 78 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELL-LNGE---EKLSPKAEALLFAADRAQHLE 78 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHH-cCCc---cCCCHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999887654321 12211 1233222 2221 11112111 1111111 2245
Q ss_pred HHHHHHhcCCCeEEEeCCCcCHHHHH--------HHHHHHhcC-----CcEEEEEECCh-HHHHHHHHHhh
Q 013831 335 VLLSRASRTPRNFIIDQTNVFKSARK--------RKLRLFVNF-----RKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 335 ~ll~~al~~g~~vIlD~Tn~~~~~R~--------~~~~~~~~~-----~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
..+.-++..|..||.|--..+.-.-+ .++..+..+ .+-.+++++.+ ++.++|..+|.
T Consensus 79 ~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~ 149 (208)
T COG0125 79 EVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRG 149 (208)
T ss_pred HHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 56777889999999997433222111 122222121 12245678875 99999999984
No 180
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.03 E-value=0.0049 Score=60.25 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=28.3
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
+|.++|.+||||||+++.++..++.....+++.|.+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~ 36 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDY 36 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccc
Confidence 467899999999999999998876444556666654
No 181
>PRK06893 DNA replication initiation factor; Validated
Probab=97.02 E-value=0.0077 Score=57.23 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=20.4
Q ss_pred eEEEEEccCCCChhHHHHHHHhh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~ 289 (435)
..++++|+||+|||++++.++.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999998865
No 182
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=97.02 E-value=0.017 Score=53.17 Aligned_cols=113 Identities=19% Similarity=0.268 Sum_probs=63.3
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc--------------------cC-----CCC-hH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL--------------------RK-----HNY-SE 320 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~--------------------~~-----~~~-~~ 320 (435)
.++-+.|-.||||||+++.+. .++ +-+|+.|.+-+++-.+|.+ +. .-| ++
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G---~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~ 77 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALG---IPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDP 77 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcC---CcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCH
Confidence 577789999999999999997 444 6688889775544222221 00 012 11
Q ss_pred HH-HHHHH-----HHHHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcC-CcEEEEEECChHHHHHHHHHhh
Q 013831 321 RF-QCLMG-----RANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNF-RKIAVVVFPKPEDLKIRSVKRF 391 (435)
Q Consensus 321 ~~-~~~~~-----~~~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~-~~~~vv~l~~~ee~~~R~~~R~ 391 (435)
.. +.+.. ....++++++...++.-+.+|+|..-+... . +.++ +..-+|+|+- ++.++|+.+|+
T Consensus 78 ~~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~---~----~~~~~~~tvvV~cd~-~~Ql~Rl~~Rd 147 (225)
T KOG3220|consen 78 KKRQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEA---K----LLKICHKTVVVTCDE-ELQLERLVERD 147 (225)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHH---h----HHhheeeEEEEEECc-HHHHHHHHHhc
Confidence 11 11111 122355555555566667888888755322 0 1122 1334456543 45677888884
No 183
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=97.01 E-value=0.0042 Score=58.82 Aligned_cols=114 Identities=21% Similarity=0.249 Sum_probs=66.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRAS 341 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al 341 (435)
..-++++|.|||||+|+|.++...++ ..+|++-++.+++...+.. .....+..+.+ .....-.+++..+
T Consensus 15 ~~~~v~~G~pg~gkgt~a~~l~~~~~---~~hl~tGdllr~~ia~~te----lg~~~~~~~~~g~lvpDeiv~~~l~~~l 87 (235)
T KOG3078|consen 15 GVRAVLLGAPGSGKGTQAPRLTKNFG---VIHISTGDLLRDEIASGTE----LGKEAKEAIDKGKLVPDEVVVRLLEKRL 87 (235)
T ss_pred ceEEEEEeCCCCCCCccCHHHHHhcC---CccchhHHHHHHHHhccCc----HHHHHHHHHHhcCcCcHHHHHHHHHhhc
Confidence 34567899999999999999999988 5667775554443334421 11111122211 0111112444444
Q ss_pred cCC---CeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHh
Q 013831 342 RTP---RNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 342 ~~g---~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R 390 (435)
..+ +.+|+|.---+..+... +.+.+ .-.++.+..| +.+.+|+..|
T Consensus 88 ~~~~~~~~~ildg~Prt~~qa~~----l~~~~~~~d~Vi~l~vp~~~L~~ri~~r 138 (235)
T KOG3078|consen 88 ENPRCQKGFILDGFPRTVQQAEE----LLDRIAQIDLVINLKVPEEVLVDRITGR 138 (235)
T ss_pred cccccccccccCCCCcchHHHHH----HHHccCCcceEEEecCCHHHHHHHHhcc
Confidence 544 68999984333322221 22322 4467788888 7889999888
No 184
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.99 E-value=0.0026 Score=64.88 Aligned_cols=41 Identities=39% Similarity=0.446 Sum_probs=31.8
Q ss_pred CCcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHH
Q 013831 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI 303 (435)
Q Consensus 263 ~~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~i 303 (435)
.+.+.+|+|+||-||||||.+-+|+..+. ++....++.|..
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~ 139 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTY 139 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccC
Confidence 34579999999999999999988876543 334667888854
No 185
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.99 E-value=0.0024 Score=66.18 Aligned_cols=40 Identities=38% Similarity=0.447 Sum_probs=31.8
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhC---CCccEEEeccHHH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTNLI 303 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~---~~~~~~~ls~D~i 303 (435)
..+.+++++|+|||||||.|.+++..+ .++++.+++.|..
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 347899999999999999998887653 2455778888843
No 186
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=96.98 E-value=0.0073 Score=58.80 Aligned_cols=96 Identities=19% Similarity=0.217 Sum_probs=54.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHH--HhcC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSR--ASRT 343 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~--al~~ 343 (435)
+++||+.|++||||||-.+.+. +++ |..+ |.+ + ..-...+.+ ++.. ....
T Consensus 1 m~~vIiTGlSGaGKs~Al~~lE-D~G---y~cv--DNl------P--------~~Ll~~l~~--------~~~~~~~~~~ 52 (284)
T PF03668_consen 1 MELVIITGLSGAGKSTALRALE-DLG---YYCV--DNL------P--------PSLLPQLIE--------LLAQSNSKIE 52 (284)
T ss_pred CeEEEEeCCCcCCHHHHHHHHH-hcC---eeEE--cCC------c--------HHHHHHHHH--------HHHhcCCCCc
Confidence 5799999999999998877664 344 6665 321 0 000111111 1110 0123
Q ss_pred CCeEEEeCCCcCHH-HHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHH
Q 013831 344 PRNFIIDQTNVFKS-ARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVK 389 (435)
Q Consensus 344 g~~vIlD~Tn~~~~-~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~ 389 (435)
+--+++|.-+..-. .-...+..+.+.+ .+.++|++++ +++++|-++
T Consensus 53 ~~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~e 101 (284)
T PF03668_consen 53 KVAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSE 101 (284)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHh
Confidence 45788898543221 1222233333334 7889999996 889888876
No 187
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.98 E-value=0.012 Score=63.39 Aligned_cols=143 Identities=11% Similarity=0.094 Sum_probs=73.2
Q ss_pred EEEEEccCCCChhHHHHHHHhhC----CCccEEEeccHHHHHHhc--c-CCCc-------cCCC--ChHHHHHH--HHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLILEQMK--V-PGLL-------RKHN--YSERFQCL--MGRA 329 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~----~~~~~~~ls~D~ir~~~~--~-~G~~-------~~~~--~~~~~~~~--~~~~ 329 (435)
.++|+|.+|+|||+++..++... ++..++.++.+++...+. + .+.. +... .-+..+.+ .+..
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~t 395 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKEST 395 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHHH
Confidence 47999999999999999887643 344567787776554432 0 1110 0000 00000000 0011
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHh-cCCcEEEEEECCh--HHHHHHHHHhhhhcCCCCcHHHHHHH
Q 013831 330 NAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFV-NFRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNNM 406 (435)
Q Consensus 330 ~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~-~~~~~~vv~l~~~--ee~~~R~~~R~~~~~~~vp~~vi~~m 406 (435)
+..+-.++......++.+|| .++..+..-..+...+. .+.--.++.+..| ++.++=++++....+-.++++++.-+
T Consensus 396 qeeLF~l~N~l~e~gk~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yL 474 (617)
T PRK14086 396 QEEFFHTFNTLHNANKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFI 474 (617)
T ss_pred HHHHHHHHHHHHhcCCCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 12233455555677777777 44555543322222222 2222234566554 33333333333334667888888888
Q ss_pred Hhccc
Q 013831 407 LANYV 411 (435)
Q Consensus 407 ~~~fe 411 (435)
..+++
T Consensus 475 a~r~~ 479 (617)
T PRK14086 475 ASRIS 479 (617)
T ss_pred HHhcc
Confidence 88775
No 188
>PRK10867 signal recognition particle protein; Provisional
Probab=96.95 E-value=0.0028 Score=65.81 Aligned_cols=39 Identities=38% Similarity=0.500 Sum_probs=30.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC---CccEEEeccHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNLI 303 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~---~~~~~~ls~D~i 303 (435)
.+.+|+|+|+|||||||++.+++..+. ++.+.+++.|..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 478999999999999998888876431 344778888843
No 189
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.93 E-value=0.005 Score=58.44 Aligned_cols=37 Identities=27% Similarity=0.283 Sum_probs=30.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE 305 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~ 305 (435)
..+|.+.|+|||||||+|+.+++.++ +..++++.+.+
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~---~~~~~~~~~~r 40 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG---FHYLDTGAMYR 40 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC---CCcccCchhHH
Confidence 36789999999999999999999887 55677776533
No 190
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.92 E-value=0.0084 Score=56.26 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=28.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI 303 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~i 303 (435)
...++++|.||+||||+|+.++.... +..++.++.+.+
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 56889999999999999999986542 223566665544
No 191
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]
Probab=96.90 E-value=0.00043 Score=72.25 Aligned_cols=52 Identities=31% Similarity=0.468 Sum_probs=41.5
Q ss_pred EEec-CCceEeCCC-cccCCCCCCCCCEEEEEEecCCCCceeEEEEeCccceeeccc
Q 013831 137 GFGG-TGKFSHGGN-FLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQ 191 (435)
Q Consensus 137 gy~~-~G~~~~~~~-~~~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~lg~af~ 191 (435)
+|++ +|..+..+. ...||+.|++||+|||.+|... +..+|++||..+|++|-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~i~~~~~~~~---~~~~~~~~~~~~gi~f~ 55 (469)
T KOG1477|consen 2 GYHGDDGNFFLKSGDGQLYGPVFTTGDVIPCEVNTIN---GSDFFTKNGPDMGIAFY 55 (469)
T ss_pred CCcccchhhhhhcccccccCCcCCccccccceEeccC---CceeEEEEcCCcceeee
Confidence 4433 344444332 3579999999999999999998 79999999999999995
No 192
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.90 E-value=0.001 Score=56.06 Aligned_cols=37 Identities=32% Similarity=0.434 Sum_probs=29.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCc--cEEEeccHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNL 302 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~--~~~~ls~D~ 302 (435)
...++++|+||+||||+++.++..+... ..+.++.+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE
Confidence 3578999999999999999999887754 366666553
No 193
>PHA03132 thymidine kinase; Provisional
Probab=96.90 E-value=0.015 Score=62.13 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
..+|.+-|.-||||||+++.+.+.+
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~l 281 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGIL 281 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5788999999999999999999887
No 194
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.88 E-value=0.0018 Score=61.18 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=42.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCcc----CCCChHHHHHHHHHHHHHHHHHHHHHh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLR----KHNYSERFQCLMGRANAIFDVLLSRAS 341 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~----~~~~~~~~~~~~~~~~~~~~~ll~~al 341 (435)
+.+++++|.||+||||+|+.+.. + ..+|+.|.....+ .|... +......|+.+.+... .++..+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~----~-~~~~~~d~~~~~l--~g~~~~~v~~~d~~~~~~~~~d~l~-----~~~~~~ 79 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG----K-TLVLSFDMSSKVL--IGDENVDIADHDDMPPIQAMVEFYV-----MQNIQA 79 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC----C-CEEEeccccchhc--cCCCCCceeecCCCCCHHHHHHHHH-----HHHhcc
Confidence 56799999999999999998842 1 4677777532222 23211 0111233555544332 223333
Q ss_pred cCCCeEEEeC
Q 013831 342 RTPRNFIIDQ 351 (435)
Q Consensus 342 ~~g~~vIlD~ 351 (435)
..=.+||||.
T Consensus 80 ~~ydtVVIDs 89 (220)
T TIGR01618 80 VKYDNIVIDN 89 (220)
T ss_pred ccCCEEEEec
Confidence 4456888887
No 195
>PRK06620 hypothetical protein; Validated
Probab=96.87 E-value=0.0076 Score=56.73 Aligned_cols=130 Identities=12% Similarity=0.209 Sum_probs=66.1
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCC---ccCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGL---LRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~---~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~ 343 (435)
..++++|+||+||||+++.++.... ...++.....+.+....+ +.+. ..|+ ...+-.++..+.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~~~~~~~~~~~~~d~lliDdi---~~~~------~~~lf~l~N~~~e~ 112 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN---AYIIKDIFFNEEILEKYNAFIIEDI---ENWQ------EPALLHIFNIINEK 112 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC---CEEcchhhhchhHHhcCCEEEEecc---ccch------HHHHHHHHHHHHhc
Confidence 4679999999999999999877654 233332211111100000 0000 1111 01233455555678
Q ss_pred CCeEEEeCCCcCHHHHHHHHHHHhc-CCcEEEEEECCh-HHHHHHHHH-hhhhcCCCCcHHHHHHHHhccc
Q 013831 344 PRNFIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFPKP-EDLKIRSVK-RFKEMGKEVPADAVNNMLANYV 411 (435)
Q Consensus 344 g~~vIlD~Tn~~~~~R~~~~~~~~~-~~~~~vv~l~~~-ee~~~R~~~-R~~~~~~~vp~~vi~~m~~~fe 411 (435)
|+.+|+-++-..+.. . +..+.. .....++-++.| ++.+....+ +....+-.++++++.-+.++++
T Consensus 113 g~~ilits~~~p~~l-~--l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~ 180 (214)
T PRK06620 113 QKYLLLTSSDKSRNF-T--LPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLP 180 (214)
T ss_pred CCEEEEEcCCCcccc-c--hHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc
Confidence 888888876443321 1 122221 111235566554 333333333 3222355688999888887764
No 196
>PRK05642 DNA replication initiation factor; Validated
Probab=96.86 E-value=0.0099 Score=56.68 Aligned_cols=135 Identities=12% Similarity=0.106 Sum_probs=69.8
Q ss_pred eEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccHHHHHHhc-----cC-CC---ccCCC---ChHHHHHHHHHHHHH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTNLILEQMK-----VP-GL---LRKHN---YSERFQCLMGRANAI 332 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D~ir~~~~-----~~-G~---~~~~~---~~~~~~~~~~~~~~~ 332 (435)
..++++|.+|+|||++++.++... .+.+++.++.+.+..... +. .+ +.+.. -.+.|+ ..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~-------~~ 118 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWE-------EA 118 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHH-------HH
Confidence 457899999999999999886432 123467787776543210 00 00 00000 011121 12
Q ss_pred HHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcE---EEEEECC-h-HHHHHHHHHhhhhcCCCCcHHHHHHHH
Q 013831 333 FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKI---AVVVFPK-P-EDLKIRSVKRFKEMGKEVPADAVNNML 407 (435)
Q Consensus 333 ~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~---~vv~l~~-~-ee~~~R~~~R~~~~~~~vp~~vi~~m~ 407 (435)
+-.++..+...|+.+|+=++.. +..-......+.. +. .++-++. + ++.++-+++|....+-.++++++.-+.
T Consensus 119 Lf~l~n~~~~~g~~ilits~~~-p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~ 195 (234)
T PRK05642 119 LFHLFNRLRDSGRRLLLAASKS-PRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFIL 195 (234)
T ss_pred HHHHHHHHHhcCCEEEEeCCCC-HHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3345555567788887777533 3211100111111 22 3344554 3 444444443433335668899998888
Q ss_pred hccc
Q 013831 408 ANYV 411 (435)
Q Consensus 408 ~~fe 411 (435)
.+++
T Consensus 196 ~~~~ 199 (234)
T PRK05642 196 TRGT 199 (234)
T ss_pred HhcC
Confidence 8775
No 197
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.85 E-value=0.0024 Score=57.09 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=18.0
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.||+||||+++.|++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 689999999999999999988
No 198
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.83 E-value=0.026 Score=59.08 Aligned_cols=144 Identities=13% Similarity=0.137 Sum_probs=71.4
Q ss_pred eEEEEEccCCCChhHHHHHHHhhC----CCccEEEeccHHHHHHhc--c-CCCc-------cCCC--ChHHHHHHH--HH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLILEQMK--V-PGLL-------RKHN--YSERFQCLM--GR 328 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~----~~~~~~~ls~D~ir~~~~--~-~G~~-------~~~~--~~~~~~~~~--~~ 328 (435)
.-+++.|+||+|||++++.++... ++..++.++.+.+..++. + .+.. +... .-+..+.+. +.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~ 228 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKER 228 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCHH
Confidence 347899999999999999887653 344466777765543321 0 0000 0000 000001000 00
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhc-CCcEEEEEECCh--HHHHHHHHHhhhhcCCCCcHHHHHH
Q 013831 329 ANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNN 405 (435)
Q Consensus 329 ~~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~~~~vv~l~~~--ee~~~R~~~R~~~~~~~vp~~vi~~ 405 (435)
.+..+-.++....+.++.+|+-++ ..+..-..+-..+.. +..-.++.++.| ++..+-++++....+-.++++++..
T Consensus 229 ~~~~l~~~~n~l~~~~~~iiits~-~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ 307 (450)
T PRK00149 229 TQEEFFHTFNALHEAGKQIVLTSD-RPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEF 307 (450)
T ss_pred HHHHHHHHHHHHHHCCCcEEEECC-CCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 112233344455567777777554 444332211112222 211234566554 4444444444433355688888888
Q ss_pred HHhccc
Q 013831 406 MLANYV 411 (435)
Q Consensus 406 m~~~fe 411 (435)
+.+++.
T Consensus 308 ia~~~~ 313 (450)
T PRK00149 308 IAKNIT 313 (450)
T ss_pred HHcCcC
Confidence 877664
No 199
>PRK14974 cell division protein FtsY; Provisional
Probab=96.81 E-value=0.0029 Score=63.57 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=29.0
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI 303 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~i 303 (435)
.+.+|+++|+||+||||.+.+++..+. +..+.+++.|..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 478999999999999998887775432 223556777743
No 200
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.80 E-value=0.0018 Score=60.12 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=28.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL 302 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ 302 (435)
|.+|+|+|++|+||||-+.+++..+. ++++..++.|.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~ 39 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADT 39 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEEST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCC
Confidence 57999999999999999988875431 44566788874
No 201
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.80 E-value=0.0043 Score=56.88 Aligned_cols=139 Identities=15% Similarity=0.052 Sum_probs=71.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEeccHHHHHHhccCC-CccCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPG-LLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D~ir~~~~~~G-~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~ 343 (435)
.+.++++|++||||||+.+.++...+. .+.+.+. |. .++.+.. ......+........ ....+..++..+++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ie-d~--~E~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~lR~ 99 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIE-DT--AELQLPHPNWVRLVTRPGNVEGS--GEVTMADLLRSALRM 99 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEC-Cc--cccCCCCCCEEEEEEecCCCCCC--CccCHHHHHHHHhcc
Confidence 578999999999999999999877653 3344442 21 1221110 000000000000000 000122355556677
Q ss_pred CCeEEEeCCCcCHHHHHHHHHHHhc-CC-cEEEEEECChHHHHHHHHHhhhhcCCCCcHHHHHHHHhccc
Q 013831 344 PRNFIIDQTNVFKSARKRKLRLFVN-FR-KIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNMLANYV 411 (435)
Q Consensus 344 g~~vIlD~Tn~~~~~R~~~~~~~~~-~~-~~~vv~l~~~ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe 411 (435)
..++|+=..--.++... .++.+.. +. -+..+...++.+.++|+..+....+...+. +.+.+...+.
T Consensus 100 ~pd~i~igEir~~ea~~-~~~a~~tGh~g~~~T~Ha~s~~~~~~Rl~~~~~~~~~~~~~-~~~~i~~~~d 167 (186)
T cd01130 100 RPDRIIVGEVRGGEALD-LLQAMNTGHPGGMTTIHANSAEEALTRLELLPSNVPLGRPL-LREQIKEAID 167 (186)
T ss_pred CCCEEEEEccCcHHHHH-HHHHHhcCCCCceeeecCCCHHHHHHHHHHHHhhcCccHHH-HHHHHHHhCC
Confidence 66666655444555443 4554432 22 344556666778889999886554444444 4444455443
No 202
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.79 E-value=0.019 Score=48.60 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
...+++.|.||+||||+++.++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999876
No 203
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.78 E-value=0.0041 Score=64.02 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=33.5
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhc
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK 308 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~ 308 (435)
..+.|+++|.+||||||+++.|++.++-..+..++.+.+.++++
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~~~~~ 261 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFSHLG 261 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHHHhhc
Confidence 46789999999999999999999986633344566676655543
No 204
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.73 E-value=0.037 Score=57.81 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=28.9
Q ss_pred EEEEEccCCCChhHHHHHHHhh----CCCccEEEeccHHHHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD----HPEKRYILLGTNLILEQ 306 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~----~~~~~~~~ls~D~ir~~ 306 (435)
-+++.|.||+|||++++.++.. .++..++.++.+++...
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~ 174 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND 174 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 4899999999999999987764 34445667777665444
No 205
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.69 E-value=0.022 Score=51.14 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=27.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC-CCccEEEeccHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH-PEKRYILLGTNLI 303 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~-~~~~~~~ls~D~i 303 (435)
+++++++|.||+||||+.+...+.+ . +.+++.-++
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~---~~ivNyG~~ 39 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVK---HKIVNYGDL 39 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhh---ceeeeHhHH
Confidence 6899999999999999999888876 3 445555444
No 206
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.68 E-value=0.031 Score=57.70 Aligned_cols=144 Identities=15% Similarity=0.139 Sum_probs=70.4
Q ss_pred eEEEEEccCCCChhHHHHHHHhhC----CCccEEEeccHHHHHHhc--c-CCC-------ccCC--CChHHHHHHH--HH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLILEQMK--V-PGL-------LRKH--NYSERFQCLM--GR 328 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~----~~~~~~~ls~D~ir~~~~--~-~G~-------~~~~--~~~~~~~~~~--~~ 328 (435)
..+++.|.||+|||++++.++.+. ++..++.++.+.+..++. + .+. ++.. ..-+..+.+. +.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~ 216 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKER 216 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCCHH
Confidence 357899999999999999887543 234566777766543321 0 010 0000 0000000000 01
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhc-CCcEEEEEECCh--HHHHHHHHHhhhhcCCCCcHHHHHH
Q 013831 329 ANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNN 405 (435)
Q Consensus 329 ~~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~~~~vv~l~~~--ee~~~R~~~R~~~~~~~vp~~vi~~ 405 (435)
.+..+-.++....+.++.+|+-.+ ..+..-..+-..+.. +..-.++.++.| ++..+-++++....+-.++++++..
T Consensus 217 ~~~~l~~~~n~~~~~~~~iiits~-~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ 295 (405)
T TIGR00362 217 TQEEFFHTFNALHENGKQIVLTSD-RPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEF 295 (405)
T ss_pred HHHHHHHHHHHHHHCCCCEEEecC-CCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 112233344444566777777543 444432221111221 111134666554 3444334444433456688888888
Q ss_pred HHhccc
Q 013831 406 MLANYV 411 (435)
Q Consensus 406 m~~~fe 411 (435)
+.+++.
T Consensus 296 ia~~~~ 301 (405)
T TIGR00362 296 IAKNIR 301 (405)
T ss_pred HHHhcC
Confidence 877664
No 207
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.67 E-value=0.04 Score=53.32 Aligned_cols=23 Identities=39% Similarity=0.338 Sum_probs=20.1
Q ss_pred eEEEEEccCCCChhHHHHHHHhh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~ 289 (435)
.-+++.|+||+||||+|+.+++.
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Confidence 44788999999999999999865
No 208
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.65 E-value=0.0083 Score=59.94 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=31.1
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI 303 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~i 303 (435)
..+.+++++|+|||||||.+.+++..+. +.++.+++.|..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 3478999999999999999999986543 234667777753
No 209
>PLN03025 replication factor C subunit; Provisional
Probab=96.63 E-value=0.0071 Score=60.37 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEccCCCChhHHHHHHHhhC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~ 290 (435)
+++.|+||+||||+|+.+++.+
T Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 37 LILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999875
No 210
>PF13245 AAA_19: Part of AAA domain
Probab=96.62 E-value=0.003 Score=49.37 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=16.9
Q ss_pred ceEEEEEccCCCChhHHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWV 287 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~ 287 (435)
..++++.|+|||||||.+....
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i 31 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARI 31 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4678889999999996554443
No 211
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.60 E-value=0.012 Score=61.10 Aligned_cols=39 Identities=31% Similarity=0.360 Sum_probs=30.7
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI 303 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~i 303 (435)
.+.+|+|+|+||+||||.+.+++..+. +....+++.|..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 478999999999999999999986543 234667777753
No 212
>PRK08727 hypothetical protein; Validated
Probab=96.58 E-value=0.035 Score=52.86 Aligned_cols=137 Identities=12% Similarity=0.098 Sum_probs=67.0
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhc-----cCC--C--ccCCCC---hHHHHHHHHHHHHH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMK-----VPG--L--LRKHNY---SERFQCLMGRANAI 332 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~-----~~G--~--~~~~~~---~~~~~~~~~~~~~~ 332 (435)
..++++|.+|+|||++++.++.... +..++.++.+.....+. +.. . +.+..+ .+.++ ..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~-------~~ 114 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQREDE-------VA 114 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChHHH-------HH
Confidence 4589999999999999999854421 22345555544322110 000 0 000000 11111 11
Q ss_pred HHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhc-CCcEEEEEECCh--HHHHHHHHHhhhhcCCCCcHHHHHHHHhc
Q 013831 333 FDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FRKIAVVVFPKP--EDLKIRSVKRFKEMGKEVPADAVNNMLAN 409 (435)
Q Consensus 333 ~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~~~~vv~l~~~--ee~~~R~~~R~~~~~~~vp~~vi~~m~~~ 409 (435)
+-.++......+..+|+-... .+..-......+.. .....++-++.+ +++.+-+++|....+-.++++++.-+.++
T Consensus 115 lf~l~n~~~~~~~~vI~ts~~-~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~ 193 (233)
T PRK08727 115 LFDFHNRARAAGITLLYTARQ-MPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTH 193 (233)
T ss_pred HHHHHHHHHHcCCeEEEECCC-ChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh
Confidence 223444444556667776543 33322111222222 111335566654 44444444444333566888888888776
Q ss_pred cc
Q 013831 410 YV 411 (435)
Q Consensus 410 fe 411 (435)
..
T Consensus 194 ~~ 195 (233)
T PRK08727 194 GE 195 (233)
T ss_pred CC
Confidence 54
No 213
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.58 E-value=0.026 Score=59.49 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+..++++|+||+||||+|+.+++.+.
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45689999999999999999988754
No 214
>CHL00181 cbbX CbbX; Provisional
Probab=96.57 E-value=0.024 Score=55.85 Aligned_cols=38 Identities=24% Similarity=0.222 Sum_probs=27.3
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCC------CccEEEeccHHHH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHP------EKRYILLGTNLIL 304 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~------~~~~~~ls~D~ir 304 (435)
.-+++.|+||+||||+|+.++..+. ...++.++.+.+.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~ 103 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLV 103 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHH
Confidence 4478899999999999999976531 1125667666543
No 215
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.036 Score=55.90 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=29.1
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
+=++|+|+||+|||-+|+.++.+.. ..++.||.-.+
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~-tTFFNVSsstl 281 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECG-TTFFNVSSSTL 281 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhc-CeEEEechhhh
Confidence 4689999999999999999998876 34666766544
No 216
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.035 Score=50.03 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=62.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEeccH--------HHHHHhcc-CCCccCCCCh-HHHHHHHHHHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTN--------LILEQMKV-PGLLRKHNYS-ERFQCLMGRANAIFD 334 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D--------~ir~~~~~-~G~~~~~~~~-~~~~~~~~~~~~~~~ 334 (435)
.+++.++|++||||||+.+.++...+. .+-+.++.. .++..+.. ... ...+. ..++.+...-++..-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~--~~~~~~t~~e~lLS~G~~~rl 105 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQD--PFLFSGTIRENILSGGQRQRI 105 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCC--chhccchHHHHhhCHHHHHHH
Confidence 578999999999999999999876542 223333321 11122111 111 01111 111211111111111
Q ss_pred HHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHH
Q 013831 335 VLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDL 383 (435)
Q Consensus 335 ~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~ 383 (435)
.++...+.....+|+|. ..+++..+..+++.+.... ..+++++.-. +++
T Consensus 106 ~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 158 (171)
T cd03228 106 AIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 23334457788999997 5788888888777777643 4555555433 443
No 217
>PF13173 AAA_14: AAA domain
Probab=96.53 E-value=0.018 Score=49.30 Aligned_cols=92 Identities=14% Similarity=0.235 Sum_probs=51.6
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCC-CccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~ 345 (435)
+++++.|+.++||||+++++++.+. ..+++.++-|..+.... . ..+ ..+.+.+.......
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~--------------~-~~~----~~~~~~~~~~~~~~ 63 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRL--------------A-DPD----LLEYFLELIKPGKK 63 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHH--------------h-hhh----hHHHHHHhhccCCc
Confidence 6899999999999999999997754 22355565544322100 0 000 01112222123566
Q ss_pred eEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEEC
Q 013831 346 NFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFP 378 (435)
Q Consensus 346 ~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~ 378 (435)
.++||.-+..+.... .++.+.+.. ...+++.-
T Consensus 64 ~i~iDEiq~~~~~~~-~lk~l~d~~~~~~ii~tg 96 (128)
T PF13173_consen 64 YIFIDEIQYLPDWED-ALKFLVDNGPNIKIILTG 96 (128)
T ss_pred EEEEehhhhhccHHH-HHHHHHHhccCceEEEEc
Confidence 899998766665444 345444433 45555443
No 218
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.53 E-value=0.0025 Score=62.73 Aligned_cols=40 Identities=23% Similarity=0.125 Sum_probs=29.7
Q ss_pred CCcceEEEEEccCCCChhHHHHHHHhhCC----CccEEEeccHH
Q 013831 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNL 302 (435)
Q Consensus 263 ~~~~~liim~GlPGSGKST~A~~l~~~~~----~~~~~~ls~D~ 302 (435)
.+.+.+|-++|++||||||+|+.+...+. ...+.+++.|.
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~ 102 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG 102 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc
Confidence 34578999999999999999988754432 22366777774
No 219
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.51 E-value=0.0088 Score=58.02 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=24.8
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls 299 (435)
.-+++.|.||+|||++|+.+++.++ ..++.++
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg-~~~~~i~ 53 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRD-RPVMLIN 53 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC-CCEEEEe
Confidence 3467899999999999999998764 3355553
No 220
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=96.51 E-value=0.041 Score=53.07 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=24.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+||++-|.-|||||++|+.+++++.
T Consensus 71 SkvI~VeGnI~sGK~klAKelAe~Lg 96 (393)
T KOG3877|consen 71 SKVIVVEGNIGSGKTKLAKELAEQLG 96 (393)
T ss_pred ceEEEEeCCcccCchhHHHHHHHHhC
Confidence 58999999999999999999999986
No 221
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.50 E-value=0.025 Score=53.36 Aligned_cols=137 Identities=20% Similarity=0.287 Sum_probs=65.8
Q ss_pred eEEEEEccCCCChhHHHHHHHh----hCCCccEEEeccHHHHHHhc--c-CCC-------ccCC---------CChHHHH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVK----DHPEKRYILLGTNLILEQMK--V-PGL-------LRKH---------NYSERFQ 323 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~----~~~~~~~~~ls~D~ir~~~~--~-~G~-------~~~~---------~~~~~~~ 323 (435)
..+++.|.+|+|||++.+.++. ..++.+++.++.+++.+.+. + .+. ++.. ..... .
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~-~ 113 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGK-Q 113 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTH-H
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCc-h
Confidence 3468899999999999888764 34566678888766543321 0 010 0000 00110 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEeCCCcCHH---HHHHHHHHHhcCCcEEEEEECCh--HHHHHHHHHhhhhcCCCC
Q 013831 324 CLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKS---ARKRKLRLFVNFRKIAVVVFPKP--EDLKIRSVKRFKEMGKEV 398 (435)
Q Consensus 324 ~~~~~~~~~~~~ll~~al~~g~~vIlD~Tn~~~~---~R~~~~~~~~~~~~~~vv~l~~~--ee~~~R~~~R~~~~~~~v 398 (435)
..+..+-.++......|+.+|+-....-.+ ...++...+.. . .++-+..| ++..+=++++....+-.+
T Consensus 114 ----~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~--G-l~~~l~~pd~~~r~~il~~~a~~~~~~l 186 (219)
T PF00308_consen 114 ----RTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSW--G-LVVELQPPDDEDRRRILQKKAKERGIEL 186 (219)
T ss_dssp ----HHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHC--S-EEEEE----HHHHHHHHHHHHHHTT--S
T ss_pred ----HHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhh--c-chhhcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 112233445555567777777665221111 11222222221 1 22344443 333333333444446779
Q ss_pred cHHHHHHHHhccc
Q 013831 399 PADAVNNMLANYV 411 (435)
Q Consensus 399 p~~vi~~m~~~fe 411 (435)
|+++++-+.+++.
T Consensus 187 ~~~v~~~l~~~~~ 199 (219)
T PF00308_consen 187 PEEVIEYLARRFR 199 (219)
T ss_dssp -HHHHHHHHHHTT
T ss_pred cHHHHHHHHHhhc
Confidence 9999999988874
No 222
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.47 E-value=0.011 Score=55.85 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=25.2
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~ 300 (435)
.=+++.|+||.||||+|+-++.+... .+..+|.
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~-~~~~~sg 83 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGV-NFKITSG 83 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT---EEEEEC
T ss_pred ceEEEECCCccchhHHHHHHHhccCC-CeEeccc
Confidence 35789999999999999999999863 3545543
No 223
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.47 E-value=0.031 Score=50.49 Aligned_cols=112 Identities=14% Similarity=0.155 Sum_probs=61.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEecc--------HHHHHHhcc-CCCccCCCCh-HHHHHHHHHHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGT--------NLILEQMKV-PGLLRKHNYS-ERFQCLMGRANAIFD 334 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls~--------D~ir~~~~~-~G~~~~~~~~-~~~~~~~~~~~~~~~ 334 (435)
.+++.++|++||||||+.+.++...+ ..+-+.++. ..++..+.. ... ...+. ...+.+...-++..-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~--~~~~~~tv~~~lLS~G~~qrv 105 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQD--DELFSGSIAENILSGGQRQRL 105 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCC--CccccCcHHHHCcCHHHHHHH
Confidence 57899999999999999999987653 222333332 122222211 111 00111 111111110111111
Q ss_pred HHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC--cEEEEEECC
Q 013831 335 VLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPK 379 (435)
Q Consensus 335 ~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~ 379 (435)
.++...+.....+|+|- +.+++..|...++.+.... ..+++++.-
T Consensus 106 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh 154 (173)
T cd03246 106 GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAH 154 (173)
T ss_pred HHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 23334457788999997 6788888888777776542 356666544
No 224
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=96.41 E-value=0.033 Score=61.24 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=33.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
..+|.+.|++||||||+|+.+++.++ +..++++.+.+.+
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~---~~~~~~~~~~~~~ 480 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALG---YHYLDSGALYRLT 480 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhC---CeEecHHHhhhHH
Confidence 44788899999999999999999987 7789888876654
No 225
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.38 E-value=0.017 Score=58.10 Aligned_cols=140 Identities=16% Similarity=0.143 Sum_probs=74.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCc-cEEEeccHHHHHHhccCCCccCCC-ChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEK-RYILLGTNLILEQMKVPGLLRKHN-YSERFQCLMGRANAIFDVLLSRASRT 343 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~-~~~~ls~D~ir~~~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~ll~~al~~ 343 (435)
...|+++|.+||||||+.+.+....+.. +.+.+ ++. .++.+........ ...... .....-.+..+++.+++.
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~ti--Ed~-~El~l~~~~n~~~~~~~~~~--~~~~~~~~~~ll~~~LR~ 234 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITV--EDA-REIVLSNHPNRVHLLASKGG--QGRAKVTTQDLIEACLRL 234 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEe--cCC-CccccccCCCEEEEEecCCC--CCcCcCcHHHHHHHHhcc
Confidence 4578999999999999999999887742 33333 221 1222111000000 000000 000011234467777787
Q ss_pred CCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHhhhhcCCCCcHHHHHHHH-hccc
Q 013831 344 PRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNML-ANYV 411 (435)
Q Consensus 344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~ee~~~R~~~R~~~~~~~vp~~vi~~m~-~~fe 411 (435)
.-++|+=.---..+... +++.+..-+ -++.+..+++.+.+.|+.......+..++.+.+.++. ..+.
T Consensus 235 ~PD~IivGEiR~~ea~~-~l~a~~tGh~G~~tTiHa~s~~~ai~Rl~~~~~~~~~~~~~~~~~~~i~~~iD 304 (332)
T PRK13900 235 RPDRIIVGELRGAEAFS-FLRAINTGHPGSISTLHADSPAMAIEQLKLMVMQAGLGMPPDQIKKYILNVVD 304 (332)
T ss_pred CCCeEEEEecCCHHHHH-HHHHHHcCCCcEEEEEecCCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCC
Confidence 77655554333444332 444444333 3566777777778889887655445556766665554 4443
No 226
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.36 E-value=0.0025 Score=64.24 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=23.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.++++++|+|||||||+|+.|++.+.
T Consensus 78 r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 58899999999999999999998764
No 227
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=96.36 E-value=0.0087 Score=55.10 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=30.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir 304 (435)
.-||-+.|...|||||+|+.+.+-+++ ..+|+.|++.
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~--~~lIhqDDFy 40 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFPG--CSLIHQDDFY 40 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHccC--Ceeecccccc
Confidence 346778899999999999999999987 4577888764
No 228
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.35 E-value=0.045 Score=52.70 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..+++++|.||+||||+++.++..+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 45889999999999999999998865
No 229
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.34 E-value=0.038 Score=54.60 Aligned_cols=113 Identities=12% Similarity=0.179 Sum_probs=67.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH--hcc----------CCCccC-CC-ChHHHH----HHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ--MKV----------PGLLRK-HN-YSERFQ----CLMG 327 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~--~~~----------~G~~~~-~~-~~~~~~----~~~~ 327 (435)
-+||++.|..|||||-+|-.|+.+++ ..+|+.|.+--. +.+ .|.+.. .. ..+..+ ....
T Consensus 7 ~KVvvI~G~TGsGKSrLaVdLA~rf~---~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~ 83 (348)
T KOG1384|consen 7 DKVVVIMGATGAGKSRLAVDLATRFP---GEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFED 83 (348)
T ss_pred ceEEEEecCCCCChhhhHHHHHHhCC---ceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHH
Confidence 57999999999999999999999988 568888753110 000 010000 00 011111 1112
Q ss_pred HHHHHHHHHHHHHhcCCC-eEEEeCCCcCHHHHHHHHHHHhc-------------------C-CcEEEEEECCh-HHHHH
Q 013831 328 RANAIFDVLLSRASRTPR-NFIIDQTNVFKSARKRKLRLFVN-------------------F-RKIAVVVFPKP-EDLKI 385 (435)
Q Consensus 328 ~~~~~~~~ll~~al~~g~-~vIlD~Tn~~~~~R~~~~~~~~~-------------------~-~~~~vv~l~~~-ee~~~ 385 (435)
.+. ..++...++|+ ++|+=.||.+-.. + +.+ . .+.++++++++ .++-+
T Consensus 84 ~a~----~aie~I~~rgk~PIv~GGs~~yi~a---l---~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~ 153 (348)
T KOG1384|consen 84 DAS----RAIEEIHSRGKLPIVVGGSNSYLQA---L---LSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFE 153 (348)
T ss_pred HHH----HHHHHHHhCCCCCEEeCCchhhHHH---H---hhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHH
Confidence 222 24444456666 6777789885321 1 222 0 13678899887 78999
Q ss_pred HHHHhh
Q 013831 386 RSVKRF 391 (435)
Q Consensus 386 R~~~R~ 391 (435)
|+.+|.
T Consensus 154 ~l~~RV 159 (348)
T KOG1384|consen 154 RLDKRV 159 (348)
T ss_pred HHHHHH
Confidence 999995
No 230
>PRK08116 hypothetical protein; Validated
Probab=96.32 E-value=0.034 Score=54.20 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=30.4
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQM 307 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~ 307 (435)
.-+++.|.||+|||++|..++..+- +..++.++..++...+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i 157 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI 157 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 4589999999999999999887642 3346667766665544
No 231
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.31 E-value=0.0026 Score=62.44 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=28.5
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
+|+++|++|||||++|..+++.++ ..+||.|.+
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~---~~iis~Ds~ 33 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLN---AEIISVDSM 33 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCC---CcEEEechh
Confidence 589999999999999999999987 457888863
No 232
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.29 E-value=0.065 Score=56.20 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=23.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+..++++|+||+||||+|+.+++.+.
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56789999999999999999998865
No 233
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.26 E-value=0.08 Score=48.67 Aligned_cols=56 Identities=21% Similarity=0.270 Sum_probs=37.3
Q ss_pred HHHHHh-cCCCeEEEeC--CCcCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHhh
Q 013831 336 LLSRAS-RTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRF 391 (435)
Q Consensus 336 ll~~al-~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~ee~~~R~~~R~ 391 (435)
.|.+|+ .+....|-|- .|+++..-.++|++|.+.. ..+|+.-.-+.++..+..+|.
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rv 207 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRV 207 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcE
Confidence 344454 4455666664 7999998888899998865 345554444577777776664
No 234
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.016 Score=58.31 Aligned_cols=101 Identities=22% Similarity=0.162 Sum_probs=60.3
Q ss_pred CCCCcceEEEEEccCCCChhHHHHHHHhhCCCcc--EEEeccHHHH----HHhccCCCccCC----CChHHHHHHHHHHH
Q 013831 261 CNMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLGTNLIL----EQMKVPGLLRKH----NYSERFQCLMGRAN 330 (435)
Q Consensus 261 ~~~~~~~liim~GlPGSGKST~A~~l~~~~~~~~--~~~ls~D~ir----~~~~~~G~~~~~----~~~~~~~~~~~~~~ 330 (435)
+.+..+.||+++||-||||||...+++-.+..++ ...+..|.+| +++..++.-... .|++. .....+.
T Consensus 96 ~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~--dpv~ia~ 173 (483)
T KOG0780|consen 96 PKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEA--DPVKIAS 173 (483)
T ss_pred cccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEeccccc--chHHHHH
Confidence 3556789999999999999999988887665433 4466777664 344322210011 11111 1222222
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHh
Q 013831 331 AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFV 367 (435)
Q Consensus 331 ~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~ 367 (435)
+-+++.-+.+.++||-+|.-...+-..+++...
T Consensus 174 ----egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~ 206 (483)
T KOG0780|consen 174 ----EGVDRFKKENFDVIIVDTSGRHKQEASLFEEMK 206 (483)
T ss_pred ----HHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHH
Confidence 345566688888888888776655555555444
No 235
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.24 E-value=0.074 Score=55.63 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=27.8
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLIL 304 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir 304 (435)
.-+++.|.||+|||++++.++.... +..++.++.+.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~ 181 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT 181 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH
Confidence 3467899999999999999886532 3446677776543
No 236
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.24 E-value=0.075 Score=47.94 Aligned_cols=113 Identities=14% Similarity=0.130 Sum_probs=61.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEeccH-------HHHHHhcc-CCCccCCCCh--HHHHHH-HHHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTN-------LILEQMKV-PGLLRKHNYS--ERFQCL-MGRANAIF 333 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls~D-------~ir~~~~~-~G~~~~~~~~--~~~~~~-~~~~~~~~ 333 (435)
.+++.++|++||||||+.+.++...+ ..+-+.++.. .++..... .... ..+. ...+.+ ...-++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~--~~~~~~tv~~~~~LS~G~~qr 103 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEP--SLYENLTVRENLKLSGGMKQR 103 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCC--ccccCCcHHHHhhcCHHHHHH
Confidence 57899999999999999999987653 2222333221 11111111 1110 0111 111211 10001111
Q ss_pred HHHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC--cEEEEEECCh
Q 013831 334 DVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKP 380 (435)
Q Consensus 334 ~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~ 380 (435)
-.++...+.....+|+|- ++++...|...++.+.... ..+++++.-.
T Consensus 104 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~ 154 (173)
T cd03230 104 LALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHI 154 (173)
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 123333456788999996 7788888888888777653 3566666443
No 237
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.17 E-value=0.026 Score=56.00 Aligned_cols=97 Identities=22% Similarity=0.162 Sum_probs=57.5
Q ss_pred CCcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHH----HHhccCCC------cc-CCCChHHHHHHHHHH
Q 013831 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLIL----EQMKVPGL------LR-KHNYSERFQCLMGRA 329 (435)
Q Consensus 263 ~~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir----~~~~~~G~------~~-~~~~~~~~~~~~~~~ 329 (435)
.+.+-+|+++|..|+||||-+.+++..+. ++++++...|.+| ++|.+.|. .. .+.-.+.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpA-------- 207 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPA-------- 207 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcH--------
Confidence 34589999999999999998888876543 3446666668775 34432221 01 1111111
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhc
Q 013831 330 NAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN 368 (435)
Q Consensus 330 ~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~ 368 (435)
......++.|..++.+|||=+|--...-...+|..+.+
T Consensus 208 -aVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~K 245 (340)
T COG0552 208 -AVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKK 245 (340)
T ss_pred -HHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHH
Confidence 11223556666788877776665554444555665543
No 238
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.15 E-value=0.076 Score=48.40 Aligned_cols=108 Identities=18% Similarity=0.218 Sum_probs=56.8
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCc------------cEEEeccHHHHHHhccCCC-ccCC--CChHHHHHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK------------RYILLGTNLILEQMKVPGL-LRKH--NYSERFQCLMGRA 329 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~------------~~~~ls~D~ir~~~~~~G~-~~~~--~~~~~~~~~~~~~ 329 (435)
..+++.++|++||||||+.+.+....+.. ....+....+.+.+.+... .... .... .. .+++
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSg--Gq-~qrl 96 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSG--GE-LQRV 96 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCH--HH-HHHH
Confidence 35789999999999999999886321110 0111111112233322111 1110 0111 00 0111
Q ss_pred HHHHHHHHHHHhcC--CCeEEEeC--CCcCHHHHHHHHHHHhcCC--cEEEEEECCh
Q 013831 330 NAIFDVLLSRASRT--PRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKP 380 (435)
Q Consensus 330 ~~~~~~ll~~al~~--g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~ 380 (435)
.+....+.. ...+|+|- .++++..++.+++.+.... ..+++++.-.
T Consensus 97 -----~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~ 148 (176)
T cd03238 97 -----KLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN 148 (176)
T ss_pred -----HHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 133333456 68899996 7788888887777666532 4566666543
No 239
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.14 E-value=0.005 Score=53.30 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.9
Q ss_pred EEEEccCCCChhHHHHHHHhhCCC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPE 292 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~ 292 (435)
||++|+||+|||++|+.+++.+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~ 25 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR 25 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999988853
No 240
>PRK15453 phosphoribulokinase; Provisional
Probab=96.11 E-value=0.0052 Score=59.94 Aligned_cols=39 Identities=13% Similarity=0.143 Sum_probs=30.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC--ccEEEeccHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLIL 304 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls~D~ir 304 (435)
..+|.++|.|||||||+|+.++..+.. ....+++.|...
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh 45 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH 45 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence 568999999999999999999875542 235677777653
No 241
>PRK12377 putative replication protein; Provisional
Probab=96.11 E-value=0.057 Score=51.98 Aligned_cols=106 Identities=12% Similarity=0.127 Sum_probs=59.1
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP 344 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g 344 (435)
.-+++.|.||+|||++|..++..+. +..++.++..+++..+.. . +... + ....++ ..+..-
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~-~------~~~~-~--------~~~~~l-~~l~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHE-S------YDNG-Q--------SGEKFL-QELCKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHH-H------Hhcc-c--------hHHHHH-HHhcCC
Confidence 5689999999999999999886643 233556666666555421 0 0000 0 001122 224677
Q ss_pred CeEEEeCC---CcCHHHHHHHHHHHhc-CC-cEEEEEECC-h-HHHHHHHHH
Q 013831 345 RNFIIDQT---NVFKSARKRKLRLFVN-FR-KIAVVVFPK-P-EDLKIRSVK 389 (435)
Q Consensus 345 ~~vIlD~T---n~~~~~R~~~~~~~~~-~~-~~~vv~l~~-~-ee~~~R~~~ 389 (435)
..+|||+- ..+......++..+.. |. ...+++... . +++.++...
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~~~ 216 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLGE 216 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHhhH
Confidence 78999986 3444555544545543 43 344445433 3 666554433
No 242
>PRK13695 putative NTPase; Provisional
Probab=96.08 E-value=0.056 Score=48.77 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=18.9
Q ss_pred EEEEccCCCChhHHHHHHHhhC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~ 290 (435)
|+++|.||+||||+++.+...+
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999976543
No 243
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.08 E-value=0.035 Score=54.52 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=25.9
Q ss_pred EEEEEccCCCChhHHHHHHHhhCC------CccEEEeccHHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHP------EKRYILLGTNLIL 304 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~------~~~~~~ls~D~ir 304 (435)
-+++.|+||+||||+|+.+++.+. ...++.++.+++.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 478899999999999977765432 1126667665554
No 244
>PLN02840 tRNA dimethylallyltransferase
Probab=95.99 E-value=0.0066 Score=62.48 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=28.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ 302 (435)
..+|+++|++||||||+|..|++.++. .+|+.|.
T Consensus 21 ~~vi~I~GptgsGKTtla~~La~~~~~---~iis~Ds 54 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELAKRLNG---EIISADS 54 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHCCC---CeEeccc
Confidence 568999999999999999999999873 4566664
No 245
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.98 E-value=0.055 Score=53.91 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.1
Q ss_pred EEEEEccCCCChhHHHHHHHhhCC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.|+||+||||+|+.+++...
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999988753
No 246
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.94 E-value=0.0069 Score=52.60 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=24.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..+|++.|..||||||+++.+++.++
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999999876
No 247
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.92 E-value=0.0069 Score=55.02 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=24.5
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..+.++.++|.+||||||+++++...+.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 3467999999999999999999997765
No 248
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.92 E-value=0.16 Score=45.97 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=62.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEeccHH-------HHHHhccCCCccCCCCh-HHHHHHHHH---HHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTNL-------ILEQMKVPGLLRKHNYS-ERFQCLMGR---ANAIF 333 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls~D~-------ir~~~~~~G~~~~~~~~-~~~~~~~~~---~~~~~ 333 (435)
.+++.++|++||||||+.+.++...+ ..+-+.++... +++.+..... ....+. ..++.+... -++..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q-~~~~~~~tv~~~i~~~LS~G~~qr 106 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQ-RPYLFDTTLRNNLGRRFSGGERQR 106 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEcc-CCeeecccHHHhhcccCCHHHHHH
Confidence 57899999999999999999987754 22234443211 1222211110 000111 111111000 01111
Q ss_pred HHHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC-cEEEEEECC-hHHH
Q 013831 334 DVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR-KIAVVVFPK-PEDL 383 (435)
Q Consensus 334 ~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~-~ee~ 383 (435)
-.++...+.....+|+|. +.++...++..++.+.... ..+++++.. .+.+
T Consensus 107 v~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 160 (178)
T cd03247 107 LALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 123334467888999997 6788888888777776643 455666543 3443
No 249
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.89 E-value=0.056 Score=49.11 Aligned_cols=107 Identities=17% Similarity=0.203 Sum_probs=58.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC-CccEEEecc--------HHHHHHhc-------cCCCc---cCC--CChHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGT--------NLILEQMK-------VPGLL---RKH--NYSERFQ 323 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls~--------D~ir~~~~-------~~G~~---~~~--~~~~~~~ 323 (435)
..+++.++|++||||||+.+.++...+ ..+-+.++. ..++..+. ..|.. ... ....-
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G-- 101 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG-- 101 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH--
Confidence 368899999999999999999987653 222333321 11111111 01110 000 00000
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECC
Q 013831 324 CLMGRANAIFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPK 379 (435)
Q Consensus 324 ~~~~~~~~~~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~ 379 (435)
+ +..-.++...+.....+|+|- .+++...++..++.+..+. ...++++.-
T Consensus 102 ----~--~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh 156 (180)
T cd03214 102 ----E--RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLH 156 (180)
T ss_pred ----H--HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 0 001113334457888999996 5778888888777776542 345555543
No 250
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.88 E-value=0.02 Score=55.61 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=57.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC--ccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~ 343 (435)
..+|+++|.+||||||+.+.+....+. .+.+.| ++-. ++.+.+... ..... .....+..++..+++.
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~~~~~iiti--Edp~-E~~~~~~~q-~~v~~-------~~~~~~~~~l~~~lR~ 148 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITV--EDPV-EYQIPGINQ-VQVNE-------KAGLTFARGLRAILRQ 148 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEE--CCCc-eecCCCceE-EEeCC-------cCCcCHHHHHHHHhcc
Confidence 358999999999999999988776642 233333 2111 122222110 00000 0001233456666777
Q ss_pred CCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECChHHHHHHHHH
Q 013831 344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKPEDLKIRSVK 389 (435)
Q Consensus 344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~ee~~~R~~~ 389 (435)
+-++|+=.---.++.-...++.+..-+ -++.+.-++....+.|+..
T Consensus 149 ~PD~i~vgEiR~~e~a~~~~~aa~tGh~v~tTlHa~~~~~ai~Rl~~ 195 (264)
T cd01129 149 DPDIIMVGEIRDAETAEIAVQAALTGHLVLSTLHTNDAPGAITRLLD 195 (264)
T ss_pred CCCEEEeccCCCHHHHHHHHHHHHcCCcEEEEeccCCHHHHHHHHHH
Confidence 766555543334443332344433322 2334455556777888864
No 251
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.88 E-value=0.14 Score=46.96 Aligned_cols=113 Identities=12% Similarity=0.066 Sum_probs=58.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC---CCccEEEeccHH----HHHHhcc-CCCccCCCChHHHHHHH------HH--H
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTNL----ILEQMKV-PGLLRKHNYSERFQCLM------GR--A 329 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~---~~~~~~~ls~D~----ir~~~~~-~G~~~~~~~~~~~~~~~------~~--~ 329 (435)
.+++.++|++||||||+.+.++... +...-+.+.... +++.+.. .....-.......+.+. +. -
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~LSgG 112 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVE 112 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhcCCHH
Confidence 5899999999999999999998642 223334443211 2222211 11000000001111111 00 0
Q ss_pred HHHHHHHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC--cEEEEEEC
Q 013831 330 NAIFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFP 378 (435)
Q Consensus 330 ~~~~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~ 378 (435)
++..-.++.+.+.....+|+|- +.++...+..+++.+.++. ..+++++.
T Consensus 113 e~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivt 165 (192)
T cd03232 113 QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTI 165 (192)
T ss_pred HhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 0111123334456778888886 6677888887777776542 35555553
No 252
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.038 Score=57.77 Aligned_cols=118 Identities=19% Similarity=0.239 Sum_probs=72.4
Q ss_pred cccccccC---CCCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHH
Q 013831 254 SVLGPTFC---NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRAN 330 (435)
Q Consensus 254 ~~~~p~~~---~~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~ 330 (435)
+|.+|..- .-++.+=|+|-|+||.|||-+||++-+.++++.-.+++--+|..++ .| +..
T Consensus 241 RvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KY--VG----------------eSE 302 (744)
T KOG0741|consen 241 RVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKY--VG----------------ESE 302 (744)
T ss_pred hcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHh--hc----------------ccH
Confidence 45555542 2345678999999999999999999887765444456555555443 12 222
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECC-hHHHHHHHHHhhhhcCCCCcHHHHHHHHhc
Q 013831 331 AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPK-PEDLKIRSVKRFKEMGKEVPADAVNNMLAN 409 (435)
Q Consensus 331 ~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~-~ee~~~R~~~R~~~~~~~vp~~vi~~m~~~ 409 (435)
...+.+.. |+ ..+ ++........++|.++- +..|++|=..+ ++..|-+.|+.++..+
T Consensus 303 ~NvR~LFa-----------DA---EeE-----~r~~g~~SgLHIIIFDEiDAICKqRGS~~---g~TGVhD~VVNQLLsK 360 (744)
T KOG0741|consen 303 ENVRKLFA-----------DA---EEE-----QRRLGANSGLHIIIFDEIDAICKQRGSMA---GSTGVHDTVVNQLLSK 360 (744)
T ss_pred HHHHHHHH-----------hH---HHH-----HHhhCccCCceEEEehhhHHHHHhcCCCC---CCCCccHHHHHHHHHh
Confidence 22333332 11 111 22222222678888865 47888775554 3467889999999887
Q ss_pred cc
Q 013831 410 YV 411 (435)
Q Consensus 410 fe 411 (435)
+.
T Consensus 361 mD 362 (744)
T KOG0741|consen 361 MD 362 (744)
T ss_pred cc
Confidence 74
No 253
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.83 E-value=0.047 Score=54.76 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+.|+++|.||+||||+++.++..++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~ 187 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFN 187 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 35789999999999999999998865
No 254
>PLN02748 tRNA dimethylallyltransferase
Probab=95.83 E-value=0.0091 Score=62.47 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=31.1
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ 302 (435)
...+|+++|++||||||+|..++..++ ..+||.|.
T Consensus 21 ~~~~i~i~GptgsGKs~la~~la~~~~---~eii~~Ds 55 (468)
T PLN02748 21 KAKVVVVMGPTGSGKSKLAVDLASHFP---VEIINADS 55 (468)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC---eeEEcCch
Confidence 356899999999999999999999987 67889885
No 255
>PF05729 NACHT: NACHT domain
Probab=95.82 E-value=0.0059 Score=53.74 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.0
Q ss_pred eEEEEEccCCCChhHHHHHHHhhC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~ 290 (435)
+++++.|.||+||||+++.++..+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH
Confidence 478999999999999999988654
No 256
>COG3911 Predicted ATPase [General function prediction only]
Probab=95.80 E-value=0.055 Score=47.68 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=31.5
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
..+++|+.|-||+||||+.+.|++.--. .+....+|.|+++-
T Consensus 8 R~~~fIltGgpGaGKTtLL~aLa~~Gfa-tvee~~r~ii~~es 49 (183)
T COG3911 8 RHKRFILTGGPGAGKTTLLAALARAGFA-TVEEAGRDIIALES 49 (183)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHcCce-eeccchhhHHHHHH
Confidence 3579999999999999999999876431 13456667776653
No 257
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.78 E-value=0.0068 Score=56.59 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.8
Q ss_pred cceEEEEEccCCCChhHHHHHHHh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVK 288 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~ 288 (435)
..+++.++|++||||||+.|.+..
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 468999999999999999999875
No 258
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.78 E-value=0.12 Score=46.71 Aligned_cols=114 Identities=14% Similarity=0.152 Sum_probs=59.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEeccH----------HHHHHhcc-CCCccCCCChHHHHHHH---HHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTN----------LILEQMKV-PGLLRKHNYSERFQCLM---GRAN 330 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D----------~ir~~~~~-~G~~~~~~~~~~~~~~~---~~~~ 330 (435)
.+++.++|++||||||+++.++..++. .+-+.+... .+++.... .............+.+. ..-+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~ 105 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQ 105 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCHHH
Confidence 578999999999999999999876542 222333211 11111111 11000000001111110 0001
Q ss_pred HHHHHHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECC
Q 013831 331 AIFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPK 379 (435)
Q Consensus 331 ~~~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~ 379 (435)
+..-.++.+.+...+.+|+|- ++++...+...++.+.... ..+++++.-
T Consensus 106 ~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 159 (178)
T cd03229 106 QQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH 159 (178)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 111123334457788999996 7788888888777776542 255655543
No 259
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.75 E-value=0.032 Score=50.89 Aligned_cols=43 Identities=21% Similarity=0.382 Sum_probs=30.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccHHHHHHhc
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTNLILEQMK 308 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D~ir~~~~ 308 (435)
.+=+++.|.||+|||++|..++.+. .+..+..++..++++++.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 3568999999999999998887532 223356677788777764
No 260
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.032 Score=54.45 Aligned_cols=37 Identities=14% Similarity=0.341 Sum_probs=29.5
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir 304 (435)
+-|+|-|+||.|||.+|+..+-+-+. .+..+|+.+++
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEAnS-TFFSvSSSDLv 203 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEANS-TFFSVSSSDLV 203 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhcCC-ceEEeehHHHH
Confidence 46899999999999999999987653 37777765543
No 261
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.74 E-value=0.0064 Score=51.70 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=19.7
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
+..++++.|.||+||||+++.+++.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999875
No 262
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.73 E-value=0.19 Score=43.99 Aligned_cols=97 Identities=13% Similarity=0.193 Sum_probs=57.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP 344 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g 344 (435)
.+++.+.|.+||||||+.+.++...+. ..-+.+... ..+ +...+ ...... +++ .++...+.+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~---~~i---~~~~~--lS~G~~---~rv-----~laral~~~p 89 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST---VKI---GYFEQ--LSGGEK---MRL-----ALAKLLLENP 89 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe---EEE---EEEcc--CCHHHH---HHH-----HHHHHHhcCC
Confidence 578999999999999999999877542 222333210 011 10000 111101 111 1333345778
Q ss_pred CeEEEeC--CCcCHHHHHHHHHHHhcCCcEEEEEECC
Q 013831 345 RNFIIDQ--TNVFKSARKRKLRLFVNFRKIAVVVFPK 379 (435)
Q Consensus 345 ~~vIlD~--Tn~~~~~R~~~~~~~~~~~~~~vv~l~~ 379 (435)
..+|+|. .+++...+..+++.++... .+++++.-
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~~-~til~~th 125 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEYP-GTVILVSH 125 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHcC-CEEEEEEC
Confidence 8999997 6788888888777777653 45555543
No 263
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.72 E-value=0.053 Score=55.04 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=26.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~ 300 (435)
..=.|+-|+||+||||+|+-++..... .+..+|.
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~-~f~~~sA 81 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNA-AFEALSA 81 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCC-ceEEecc
Confidence 444678999999999999999987653 3555654
No 264
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.71 E-value=0.029 Score=57.68 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=29.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir 304 (435)
+.-|+++|+||+|||++|+.++..+.. .++.++...+.
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~~-~~i~v~~~~l~ 202 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETNA-TFIRVVGSELV 202 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhCC-CEEEeehHHHh
Confidence 456899999999999999999988763 36666554443
No 265
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.71 E-value=0.12 Score=53.67 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=24.8
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls 299 (435)
.-+++.|+||+||||+|+.+++.... .++.++
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~-~~~~l~ 68 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDA-PFEALS 68 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC-CEEEEe
Confidence 35677999999999999999987652 355554
No 266
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.043 Score=54.21 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=23.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.++|++.|+||.|||++.+.++..+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 57999999999999999999998764
No 267
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.70 E-value=0.01 Score=57.92 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=30.4
Q ss_pred CCcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHH
Q 013831 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL 302 (435)
Q Consensus 263 ~~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ 302 (435)
...+++|+++|+||+||||.+.+++..+. ++++.+++.|.
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 34578999999999999999999876542 23466777774
No 268
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.67 E-value=0.1 Score=50.47 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=26.7
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC--C-CccEEEecc
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH--P-EKRYILLGT 300 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~--~-~~~~~~ls~ 300 (435)
..+++++.|.||+||||++..++... . +..+..+|.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 35799999999999999999886542 1 233556665
No 269
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.67 E-value=0.12 Score=51.13 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=23.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
-+.+++++|+||+||||+|+.++....
T Consensus 42 ~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 42 IPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 356888899999999999999988764
No 270
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.67 E-value=0.0077 Score=57.65 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=21.3
Q ss_pred EEccCCCChhHHHHHHHhhCCC--ccEEEeccH
Q 013831 271 MVGLPASGKTTWAEKWVKDHPE--KRYILLGTN 301 (435)
Q Consensus 271 m~GlPGSGKST~A~~l~~~~~~--~~~~~ls~D 301 (435)
++|+|||||||+++.+.+-+.. ....+||-|
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence 5899999999999998765442 246667666
No 271
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.072 Score=53.35 Aligned_cols=93 Identities=19% Similarity=0.297 Sum_probs=59.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~ 345 (435)
++=|+|-|+||.|||-+|+..+.+... .++.+..-++.+++. |. .. +++ +++.+.|-+.--
T Consensus 185 PKGVLLYGPPGTGKTLLAkAVA~~T~A-tFIrvvgSElVqKYi--GE------Ga---RlV-------RelF~lArekaP 245 (406)
T COG1222 185 PKGVLLYGPPGTGKTLLAKAVANQTDA-TFIRVVGSELVQKYI--GE------GA---RLV-------RELFELAREKAP 245 (406)
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCc-eEEEeccHHHHHHHh--cc------ch---HHH-------HHHHHHHhhcCC
Confidence 577899999999999999999988764 377766666666542 31 01 122 223333333333
Q ss_pred e-EEEe------------CCCcCHHHHHHHHHHHhc---CC---cEEEEEE
Q 013831 346 N-FIID------------QTNVFKSARKRKLRLFVN---FR---KIAVVVF 377 (435)
Q Consensus 346 ~-vIlD------------~Tn~~~~~R~~~~~~~~~---~~---~~~vv~l 377 (435)
+ +.|| .|.-.++.++.+++++.. |. .+.||.-
T Consensus 246 sIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~A 296 (406)
T COG1222 246 SIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMA 296 (406)
T ss_pred eEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEe
Confidence 3 3333 467788888888998875 32 5666654
No 272
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.67 E-value=0.054 Score=49.43 Aligned_cols=110 Identities=15% Similarity=0.033 Sum_probs=61.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEeccHHHHHHhccCCCccCCC-ChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTNLILEQMKVPGLLRKHN-YSERFQCLMGRANAIFDVLLSRASRT 343 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls~D~ir~~~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~ll~~al~~ 343 (435)
.+++.++|++||||||+.+.++...+ ...-+.+... .+ +...+.. ...-.. +++ .++...+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~----~i---~~~~q~~~LSgGq~---qrv-----~laral~~~ 89 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI----TP---VYKPQYIDLSGGEL---QRV-----AIAAALLRN 89 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE----EE---EEEcccCCCCHHHH---HHH-----HHHHHHhcC
Confidence 57899999999999999999987643 2223333210 01 1000000 111001 111 133334567
Q ss_pred CCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECChHHHHHHHHHh
Q 013831 344 PRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKPEDLKIRSVKR 390 (435)
Q Consensus 344 g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~ee~~~R~~~R 390 (435)
...+|+|- +++++..++..++.+.... ..+++++.-..+..++...|
T Consensus 90 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~ 141 (177)
T cd03222 90 ATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDR 141 (177)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCE
Confidence 88999997 6788888887777666532 25666665443334444444
No 273
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.66 E-value=0.073 Score=53.23 Aligned_cols=113 Identities=17% Similarity=0.096 Sum_probs=61.3
Q ss_pred eEEEEEccCCCChhHHHHHHHhhC----CCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~----~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~ 342 (435)
.-|+++|.+||||||+.+.+.... ++.+.+.+ ++-. ++.+... ....... ... ..+..+++.+++
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivti--Ed~~-El~~~~~-n~v~l~~--~~~-----~~~~~lv~~aLR 213 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVIL--EDTA-EIQCAAE-NAVALHT--SDT-----VDMARLLKSTMR 213 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEe--cCCc-ccccCCC-CEEEecc--CCC-----cCHHHHHHHHhC
Confidence 457899999999999999998764 33344443 2211 2221110 0000000 000 123356777788
Q ss_pred CCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHhh
Q 013831 343 TPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRF 391 (435)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~ee~~~R~~~R~ 391 (435)
.+-+.|+=.=--..+... +++.+..-+ -++.+..+++.+..+|+..-.
T Consensus 214 ~~PD~IivGEiRg~ea~~-~l~a~~tGh~G~itTiHA~s~~~a~~Rl~~l~ 263 (323)
T PRK13833 214 LRPDRIIVGEVRDGAALT-LLKAWNTGHPGGVTTIHSNTAMSALRRLEQLT 263 (323)
T ss_pred CCCCEEEEeecCCHHHHH-HHHHHcCCCCceEEEECCCCHHHHHHHHHHHh
Confidence 777666554222333332 444444333 356666677778888987753
No 274
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.62 E-value=0.052 Score=54.24 Aligned_cols=115 Identities=15% Similarity=0.115 Sum_probs=62.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhh----CCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKD----HPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~----~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al 341 (435)
...++++|.+||||||+++.++.. .+..+.+.|. +- .++.+... ....+... . ...+..++..++
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIE--d~-~El~~~~~-~~v~~~~~--~-----~~~~~~ll~~aL 216 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIE--DT-GEIQCAAE-NYVQYHTS--I-----DVNMTALLKTTL 216 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEc--CC-CccccCCC-CEEEEecC--C-----CCCHHHHHHHHh
Confidence 356889999999999999999876 2333444442 11 12221110 00000000 0 012344667777
Q ss_pred cCCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHhhh
Q 013831 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRFK 392 (435)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~ee~~~R~~~R~~ 392 (435)
+.+-++|+=.=--..+... +++.+..-+ -++.+.-+++...+.|+..-..
T Consensus 217 R~~PD~IivGEiR~~Ea~~-~l~A~~tGh~G~~tTiHa~s~~~ai~Rl~~l~~ 268 (319)
T PRK13894 217 RMRPDRILVGEVRGPEALD-LLMAWNTGHEGGAATLHANNAKAGLDRLKSLIS 268 (319)
T ss_pred cCCCCEEEEeccCCHHHHH-HHHHHHcCCCceEEEECCCCHHHHHHHHHHHHh
Confidence 8777665554323444333 445444333 3556666777788888877643
No 275
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.62 E-value=0.011 Score=53.44 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=24.9
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~ 300 (435)
++++.|.|||||||||.+++..... +.+.+.+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~-~~~y~at 32 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGG-PVTYIAT 32 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCC-CeEEEEc
Confidence 4788999999999999999877543 3555544
No 276
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.61 E-value=0.14 Score=49.16 Aligned_cols=41 Identities=20% Similarity=0.341 Sum_probs=30.1
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQM 307 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~ 307 (435)
..+++.|.||+|||++|..++..+. +..++.++..++...+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l 142 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM 142 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH
Confidence 4789999999999999999987652 2345666665555443
No 277
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.60 E-value=0.15 Score=55.31 Aligned_cols=28 Identities=21% Similarity=0.238 Sum_probs=24.3
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.-...+|++|++|.||||+|+.+++.+.
T Consensus 36 RLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 36 RLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457889999999999999999998764
No 278
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.60 E-value=0.0075 Score=58.42 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=28.4
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCC--ccEEEeccHHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLIL 304 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls~D~ir 304 (435)
+|.++|.+||||||+++++.+.+.. ..+.+|+.|...
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yy 39 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFH 39 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccc
Confidence 4788999999999999998876542 236678877653
No 279
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.59 E-value=0.17 Score=45.27 Aligned_cols=105 Identities=16% Similarity=0.197 Sum_probs=58.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEeccHHH-----HHHhc-cCCCccCCCChHHHHHHHHHHHHHHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLI-----LEQMK-VPGLLRKHNYSERFQCLMGRANAIFDVLLS 338 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D~i-----r~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~ 338 (435)
.+++.++|++||||||+.+.++...+. .+-+.+....+ .+... ..+... ....-.. +++ .++.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~--qLS~G~~---qrl-----~lar 95 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVY--QLSVGER---QMV-----EIAR 95 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEE--ecCHHHH---HHH-----HHHH
Confidence 578999999999999999999876542 22233322110 00000 001000 0111000 111 1333
Q ss_pred HHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC--cEEEEEECCh
Q 013831 339 RASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKP 380 (435)
Q Consensus 339 ~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~ 380 (435)
..+.....+|+|- .+++...++..++.++.+. ..+++++.-.
T Consensus 96 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 141 (163)
T cd03216 96 ALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141 (163)
T ss_pred HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3457778999997 5688888888888777652 4566666443
No 280
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.59 E-value=0.048 Score=52.88 Aligned_cols=127 Identities=19% Similarity=0.225 Sum_probs=63.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCc--cEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~--~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~ 343 (435)
...|+++|.+||||||+.+.+....+.. +.+.+. |. .++.+.+... ...... ... ..+.+++..+++.
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iE-d~--~E~~l~~~~~-~~~~~~-~~~-----~~~~~~l~~~LR~ 196 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIE-DP--PELRLPGPNQ-IQIQTR-RDE-----ISYEDLLKSALRQ 196 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEE-SS--S-S--SCSSE-EEEEEE-TTT-----BSHHHHHHHHTTS
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEec-cc--cceeecccce-EEEEee-cCc-----ccHHHHHHHHhcC
Confidence 5789999999999999999999887654 334442 21 1222222100 000000 000 0122355566777
Q ss_pred CCeEEEeCCCcCHHHHHHHHHHHhcCCc--EEEEEECChHHHHHHHHHhhhhcCCCCcHHHHHHHH
Q 013831 344 PRNFIIDQTNVFKSARKRKLRLFVNFRK--IAVVVFPKPEDLKIRSVKRFKEMGKEVPADAVNNML 407 (435)
Q Consensus 344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~~--~~vv~l~~~ee~~~R~~~R~~~~~~~vp~~vi~~m~ 407 (435)
+-++|+=.---..+.-. .++.+..-+. ++-+.-.++.+..+|+..- ...++.+.+..+.
T Consensus 197 ~pD~iiigEiR~~e~~~-~~~a~~tGh~~~~tT~Ha~s~~~~i~Rl~~l----~~~~~~~~l~~~l 257 (270)
T PF00437_consen 197 DPDVIIIGEIRDPEAAE-AIQAANTGHLGSLTTLHANSAEDAIERLADL----GMEMDPESLRSRL 257 (270)
T ss_dssp --SEEEESCE-SCHHHH-HHHHHHTT-EEEEEEEE-SSHHHHHHHHHHH----CCTSCHHHHHHHH
T ss_pred CCCcccccccCCHhHHH-HHHhhccCCceeeeeeecCCHHHHHHHHHHH----hcccCHHHHHHHH
Confidence 66555544222222222 2443333333 4456666678888898765 2226666555553
No 281
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.58 E-value=0.14 Score=48.61 Aligned_cols=36 Identities=17% Similarity=0.345 Sum_probs=26.5
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC--C-CccEEEecc
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH--P-EKRYILLGT 300 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~--~-~~~~~~ls~ 300 (435)
..++++++|.||+|||||+..++... . +..+..+|.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 35899999999999999998876432 1 233566664
No 282
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=95.57 E-value=0.15 Score=49.01 Aligned_cols=98 Identities=16% Similarity=0.129 Sum_probs=53.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~ 345 (435)
+.+||+.|++||||||-++.+. .++ |..+ |. | +- .-+.+..+.+ . ........-
T Consensus 1 m~lvIVTGlSGAGKsvAl~~lE-DlG---yycv--DN----L--Pp--------~Llp~~~~~~----~--~~~~~~~kv 54 (286)
T COG1660 1 MRLVIVTGLSGAGKSVALRVLE-DLG---YYCV--DN----L--PP--------QLLPKLADLM----L--TLESRITKV 54 (286)
T ss_pred CcEEEEecCCCCcHHHHHHHHH-hcC---eeee--cC----C--CH--------HHHHHHHHHH----h--hcccCCceE
Confidence 3689999999999988777664 444 6555 32 1 00 0011111110 0 101112444
Q ss_pred eEEEeCCCcC-HHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHH
Q 013831 346 NFIIDQTNVF-KSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVK 389 (435)
Q Consensus 346 ~vIlD~Tn~~-~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~ 389 (435)
-|++|--+.. .+.-...+..++..+ .+.++|+++. +++++|-+.
T Consensus 55 Av~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~e 102 (286)
T COG1660 55 AVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSE 102 (286)
T ss_pred EEEEecccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhh
Confidence 7888985441 111222333444442 4788999986 889998866
No 283
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.55 E-value=0.17 Score=46.05 Aligned_cols=115 Identities=23% Similarity=0.210 Sum_probs=60.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEecc-H--------HHHHHhcc-CCCcc-CCCC--hHHHHHHHH---H
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGT-N--------LILEQMKV-PGLLR-KHNY--SERFQCLMG---R 328 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls~-D--------~ir~~~~~-~G~~~-~~~~--~~~~~~~~~---~ 328 (435)
.+++.++|.+||||||+.+.++...+ ..+-+.+.. + ..++.+.. ..... ...+ ....+.+.- .
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~L 105 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSLL 105 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhhc
Confidence 57889999999999999999997654 222233322 1 11111111 11000 0001 111121110 0
Q ss_pred --HHHHHHHHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC--cEEEEEECCh
Q 013831 329 --ANAIFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKP 380 (435)
Q Consensus 329 --~~~~~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~ 380 (435)
-++..-.++...+.....+|+|- +++++..|+..++.+.... ..+++++.-.
T Consensus 106 S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 163 (182)
T cd03215 106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSE 163 (182)
T ss_pred CHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 00111123333456778999996 7788888888877776542 3566555433
No 284
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.54 E-value=0.047 Score=56.24 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=26.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~ 300 (435)
++-+++.|+||+|||++|+.++..... .++.+..
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l~~-~fi~i~~ 212 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHTTA-TFIRVVG 212 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCC-CEEEEeh
Confidence 567889999999999999999988753 2555543
No 285
>PRK09183 transposase/IS protein; Provisional
Probab=95.54 E-value=0.15 Score=49.52 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHhh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~ 289 (435)
.+.++++|+||+||||+|..++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 356889999999999999998643
No 286
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.52 E-value=0.19 Score=49.53 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+..++++|+||+||||+|+.++..+.
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578999999999999999998875
No 287
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.51 E-value=0.01 Score=55.09 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.2
Q ss_pred EEEEEccCCCChhHHHHHHHhhCC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+|+++|++||||||+++.++...+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999998877654
No 288
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.51 E-value=0.16 Score=57.02 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=23.7
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
-...+|+.|++|+||||+|+.+++.+.
T Consensus 36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 36 INHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999998764
No 289
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.49 E-value=0.051 Score=55.64 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=29.7
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI 303 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~i 303 (435)
.+.+|+++|++|+||||.+.+|+..+. ++.+..++.|..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~ 280 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 280 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCc
Confidence 357899999999999999999986542 233556777753
No 290
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.48 E-value=0.0093 Score=53.17 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.3
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPE 292 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~ 292 (435)
=|++.|.||+||||++.+++..+..
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHh
Confidence 3788999999999999999876543
No 291
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.48 E-value=0.061 Score=58.21 Aligned_cols=108 Identities=15% Similarity=0.164 Sum_probs=61.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc--------HHHHHHhcc--------CCCccCC------CChHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT--------NLILEQMKV--------PGLLRKH------NYSERFQ 323 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~--------D~ir~~~~~--------~G~~~~~------~~~~~~~ 323 (435)
.+.+.++|.+||||||+++-+...+|..+-+.++. +.+|+.... .|..++. .+++ +
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~--e 453 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASD--E 453 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCH--H
Confidence 57889999999999999999998776544455543 344444331 1222210 1111 2
Q ss_pred HHHHHHHH-HHHHHHHHHhcCCCeEEEe--CCCcCHHHHHHHHHHHhc-CCcEEEEEE
Q 013831 324 CLMGRANA-IFDVLLSRASRTPRNFIID--QTNVFKSARKRKLRLFVN-FRKIAVVVF 377 (435)
Q Consensus 324 ~~~~~~~~-~~~~ll~~al~~g~~vIlD--~Tn~~~~~R~~~~~~~~~-~~~~~vv~l 377 (435)
++.+.++. .+.+.+ ..+..|.+.++. ..|++..+|++ +..++. +.+..++.+
T Consensus 454 ei~~al~~a~l~~~i-~~lp~G~dT~vge~G~~LSGGQrQR-ialARAll~~~~IliL 509 (588)
T PRK11174 454 QLQQALENAWVSEFL-PLLPQGLDTPIGDQAAGLSVGQAQR-LALARALLQPCQLLLL 509 (588)
T ss_pred HHHHHHHHhCHHHHH-HhcccccccccccCCCCCCHHHHHH-HHHHHHHhcCCCEEEE
Confidence 23222221 233344 234567766553 37888888887 666655 334455555
No 292
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.47 E-value=0.15 Score=48.75 Aligned_cols=25 Identities=28% Similarity=0.342 Sum_probs=21.3
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPE 292 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~ 292 (435)
=++++|.+||||||++..+...+..
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcc
Confidence 4678999999999999999877653
No 293
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=95.47 E-value=0.24 Score=45.16 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=24.8
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
||-+.+..|||++|+|+++++.++ +..++.+.+
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg---~~~~d~~ii 33 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLG---YPYYDREII 33 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT-----EE-HHHH
T ss_pred CEEECCCCCCChHHHHHHHHHHcC---CccCCHHHH
Confidence 577889999999999999999998 666776444
No 294
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.44 E-value=0.013 Score=63.17 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=28.9
Q ss_pred CCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (435)
Q Consensus 263 ~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~ 300 (435)
.+..++.+|||+||.||||+|+-++++-+-. ++-|+.
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGYs-VvEINA 359 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYS-VVEINA 359 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCce-EEEecc
Confidence 3457899999999999999999999887622 344444
No 295
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=95.44 E-value=0.019 Score=52.20 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=23.5
Q ss_pred EEEEEccCCCChhHHHHHHH-hhCCCccEEEe
Q 013831 268 VMMMVGLPASGKTTWAEKWV-KDHPEKRYILL 298 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~-~~~~~~~~~~l 298 (435)
++++.|..||||||+.+++. ....+.++.+|
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI 33 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVI 33 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEE
Confidence 68999999999999999999 44444444333
No 296
>PTZ00202 tuzin; Provisional
Probab=95.42 E-value=0.16 Score=52.66 Aligned_cols=27 Identities=15% Similarity=0.357 Sum_probs=24.1
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+.+++++|.+|+||||+++.+....+
T Consensus 285 ~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 285 HPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 356999999999999999999998776
No 297
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.41 E-value=0.011 Score=51.63 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=24.8
Q ss_pred EEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D 301 (435)
+++++|.||+||||++..++.... +...+.++.+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 478999999999999999977643 2234555543
No 298
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.39 E-value=0.15 Score=57.10 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=24.2
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
-+..+|++|+||+||||+|+.+++.+.
T Consensus 37 l~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 37 LHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 457789999999999999999998875
No 299
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.39 E-value=0.072 Score=53.96 Aligned_cols=43 Identities=19% Similarity=0.111 Sum_probs=34.5
Q ss_pred CCCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH
Q 013831 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE 305 (435)
Q Consensus 262 ~~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~ 305 (435)
+-+-+..+++.|+||.|||.+|+.+++++.. .++.++.-++..
T Consensus 144 ~ik~PlgllL~GPPGcGKTllAraiA~elg~-~~i~vsa~eL~s 186 (413)
T PLN00020 144 NIKVPLILGIWGGKGQGKSFQCELVFKKMGI-EPIVMSAGELES 186 (413)
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHHcCC-CeEEEEHHHhhc
Confidence 3345789999999999999999999999864 377887766543
No 300
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.37 E-value=0.014 Score=57.39 Aligned_cols=38 Identities=29% Similarity=0.332 Sum_probs=29.6
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC----CCccEEEeccHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNL 302 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~----~~~~~~~ls~D~ 302 (435)
...+|+++|++|+||||.+.+++..+ ....+.+|+.|.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 46799999999999999999987654 224466777775
No 301
>PLN02796 D-glycerate 3-kinase
Probab=95.37 E-value=0.016 Score=58.13 Aligned_cols=39 Identities=21% Similarity=0.011 Sum_probs=29.6
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCCCc--cEEEeccHH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNL 302 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~--~~~~ls~D~ 302 (435)
+.+-+|-++|.+||||||+++.+...+... ....|+.|.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDd 138 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDD 138 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECC
Confidence 357889999999999999999998876531 244565554
No 302
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.36 E-value=0.063 Score=54.60 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=26.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~ 300 (435)
++-+++.|+||+||||+|+.++..+... ++.++.
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~-~~~v~~ 189 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNAT-FIRVVG 189 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCC-EEecch
Confidence 4558999999999999999999987632 555443
No 303
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.35 E-value=0.039 Score=58.51 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=29.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir 304 (435)
++=+++.|+||+|||++|+.++.... ..++.++...+.
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~-~~~~~i~~~~~~ 125 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAG-VPFFSISGSDFV 125 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcC-CCeeeccHHHHH
Confidence 34589999999999999999998865 336666655543
No 304
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.35 E-value=0.069 Score=51.59 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=29.1
Q ss_pred CCcceEEEEEccCCCChhHHHHHHHhhCCC--ccEEEeccHH
Q 013831 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNL 302 (435)
Q Consensus 263 ~~~~~liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls~D~ 302 (435)
...+.+|+++|..|||||||.++|...+.. .+-.+|+.|-
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDP 57 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDP 57 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCH
Confidence 345788999999999999999998754322 1235667774
No 305
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=95.35 E-value=0.064 Score=53.43 Aligned_cols=113 Identities=17% Similarity=0.107 Sum_probs=60.8
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChH-HHHHHHHHHHHHHHHHHHHHhcC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRASRT 343 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~ll~~al~~ 343 (435)
.-|.+.||+|+||||+.-.+.+.+. +.....|..|.||.-+. .+-.|.+ ..++-+.++.. .....+..
T Consensus 51 ctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~-----knlgfs~edreenirriae----vaklfada 121 (627)
T KOG4238|consen 51 CTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLN-----KNLGFSPEDREENIRRIAE----VAKLFADA 121 (627)
T ss_pred eeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhh-----hccCCCchhHHHHHHHHHH----HHHHHhcC
Confidence 3468899999999999877766542 12256677788876432 1112322 22333332221 22222456
Q ss_pred CCeEEEeCCCcCHHHHHHHHHHHhcC-C-cEEEEEECCh-HHHHHHHHH
Q 013831 344 PRNFIIDQTNVFKSARKRKLRLFVNF-R-KIAVVVFPKP-EDLKIRSVK 389 (435)
Q Consensus 344 g~~vIlD~Tn~~~~~R~~~~~~~~~~-~-~~~vv~l~~~-ee~~~R~~~ 389 (435)
|-.-|-.....+.+.|.. -+.+.+. . .+.-|+++++ +.|.+|.-+
T Consensus 122 glvcitsfispf~~dr~~-arkihe~~~l~f~ev~v~a~l~vceqrd~k 169 (627)
T KOG4238|consen 122 GLVCITSFISPFAKDREN-ARKIHESAGLPFFEVFVDAPLNVCEQRDVK 169 (627)
T ss_pred CceeeehhcChhhhhhhh-hhhhhcccCCceEEEEecCchhhhhhcChH
Confidence 654444433333344443 2233332 2 4555788888 899888644
No 306
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=95.34 E-value=0.023 Score=53.58 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=26.9
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccE-EEeccHHHHHHh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRY-ILLGTNLILEQM 307 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~-~~ls~D~ir~~~ 307 (435)
+|.++|.|||||||+|+.+.+.... + +.+ .|.|++.+
T Consensus 2 iI~i~G~~gsGKstva~~~~~~g~~--~~~~~-~d~ik~~l 39 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIENYNA--VKYQL-ADPIKEIL 39 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHhcCCc--EEEeh-hHHHHHHH
Confidence 7899999999999999999766431 3 333 36666544
No 307
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.34 E-value=0.15 Score=56.11 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=23.7
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
-...+|++|.+|+||||+|+.+++.+.
T Consensus 37 L~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 37 LHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356889999999999999999998764
No 308
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.33 E-value=0.019 Score=49.15 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=24.2
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
...+|+|.|.-|||||||+|.+++.+.
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 358999999999999999999999886
No 309
>PRK04195 replication factor C large subunit; Provisional
Probab=95.31 E-value=0.084 Score=55.85 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=26.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls 299 (435)
...+++.|+||+||||+|+.++++++- .++.++
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~-~~ieln 71 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGW-EVIELN 71 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC-CEEEEc
Confidence 568899999999999999999998752 244554
No 310
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.27 E-value=0.12 Score=49.04 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.4
Q ss_pred eEEEEEccCCCChhHHHHHHHhhC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~ 290 (435)
.=+++.|+||.||||-+..|++++
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHH
Confidence 346789999999999999888775
No 311
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.27 E-value=0.11 Score=51.51 Aligned_cols=114 Identities=17% Similarity=0.111 Sum_probs=61.6
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCC----CccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~----~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~ 342 (435)
..++++|.+||||||+++.++...+ ..+.+.+ ++. .++.+.+. ....+... +.. ..+..++..+++
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~ti--Ed~-~El~~~~~-~~v~~~~~-~~~-----~~~~~~l~~aLR 202 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVII--EDT-RELQCAAP-NVVQLRTS-DDA-----ISMTRLLKATLR 202 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEE--CCc-hhhcCCCC-CEEEEEec-CCC-----CCHHHHHHHHhc
Confidence 4678999999999999999987753 3344444 222 22322111 00000000 000 023456777788
Q ss_pred CCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHhh
Q 013831 343 TPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRF 391 (435)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~ee~~~R~~~R~ 391 (435)
.+-++|+=.---..+. ..+++.+..-+ -++.+..+++.+.+.|+..-.
T Consensus 203 ~~pD~iivGEiR~~ea-~~~l~a~~tGh~G~~tTiHa~~~~~ai~Rl~~l~ 252 (299)
T TIGR02782 203 LRPDRIIVGEVRGGEA-LDLLKAWNTGHPGGIATIHANNAKAALDRLEQLI 252 (299)
T ss_pred CCCCEEEEeccCCHHH-HHHHHHHHcCCCCeEEeeccCCHHHHHHHHHHHH
Confidence 7776655443234443 22344444323 355566666778888887653
No 312
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.26 E-value=0.02 Score=53.48 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=30.8
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~ 306 (435)
-+|-+=||.||||||+|+.+++.++ +..|++-.+.+.
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg---~~yldTGamYRa 41 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLG---FHYLDTGAMYRA 41 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhC---CCeecccHHHHH
Confidence 4566779999999999999999998 788888766444
No 313
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.21 E-value=0.013 Score=60.13 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+=|++.|+||+||||||+.++.-+.
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHHH
Confidence 56789999999999999999987543
No 314
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.19 E-value=0.15 Score=51.16 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~ 289 (435)
+.++++++|++||||||+-+.++--
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999999854
No 315
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.17 E-value=0.015 Score=48.39 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.0
Q ss_pred EEEEccCCCChhHHHHHHHhhCC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~ 291 (435)
|+++|.+|+||||+.++++....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 68999999999999999987653
No 316
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.16 E-value=0.085 Score=58.77 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=29.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
++-+++.|+||+||||+|+.++...+. .++.++...+
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~~-~~i~i~~~~i 248 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAGA-YFISINGPEI 248 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhCC-eEEEEecHHH
Confidence 467899999999999999999988763 3566655443
No 317
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.16 E-value=0.2 Score=55.52 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.2
Q ss_pred EEEEEccCCCChhHHHHHHHhhCC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~ 291 (435)
-+++.|+||+||||+|+.+++...
T Consensus 54 slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 468899999999999999998764
No 318
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.16 E-value=0.018 Score=57.76 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=28.4
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D 301 (435)
..+.+|-++|+|||||||++..+...+. +.++.+|+.|
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~D 93 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVD 93 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeC
Confidence 3578999999999999999998765543 2335566655
No 319
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.14 E-value=0.058 Score=56.21 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=26.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls 299 (435)
++-+++.|+||+|||++|+.++..+... ++.+.
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el~~~-fi~V~ 249 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANETSAT-FLRVV 249 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCC-EEEEe
Confidence 4568899999999999999999987633 44443
No 320
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.14 E-value=0.2 Score=52.87 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
+.-++++|+||+||||.|+.+++.+
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHH
Confidence 5678999999999999999998754
No 321
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=95.13 E-value=0.02 Score=64.25 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=34.0
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhc
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK 308 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~ 308 (435)
.+|.+-|+|||||||+|+.+++.++ +..|+++.+.+.+.
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~---~~~~~~g~~yRa~a 73 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLG---AQCLNTGSFYRAFT 73 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHHH
Confidence 4788899999999999999999998 67899998877653
No 322
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.12 E-value=0.1 Score=53.28 Aligned_cols=117 Identities=13% Similarity=0.058 Sum_probs=55.8
Q ss_pred eEEEEEccCCCChhHHHHHHHhhC----CCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~----~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~ 342 (435)
-+++++|++||||||+.+.+.... +..+.+.|- |-+ ++.+.+. .......+.+ +-... ..+..++..+++
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiE-dp~--E~~~~~~-~~~~~~~q~e-vg~~~-~~~~~~l~~aLR 223 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYE-DPI--EYILGSP-DDLLPPAQSQ-IGRDV-DSFANGIRLALR 223 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe-cCc--hhccCCC-ceeecccccc-cCCCc-cCHHHHHHHhhc
Confidence 478999999999999999987654 223344441 221 1111111 0000000000 00000 123346666778
Q ss_pred CCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECChHHHHHHHHH
Q 013831 343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKPEDLKIRSVK 389 (435)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~ee~~~R~~~ 389 (435)
..-++|+=.=--..+.-...++.+..-+ -+..+.-++..+.+.|+..
T Consensus 224 ~~PD~I~vGEiRd~et~~~al~aa~TGH~v~tTlHa~s~~~ai~Rl~~ 271 (372)
T TIGR02525 224 RAPKIIGVGEIRDLETFQAAVLAGQSGHFCLGTLHVKSPGEAISRCLQ 271 (372)
T ss_pred cCCCEEeeCCCCCHHHHHHHHHHHhcCCcEEEeeCCCCHHHHHHHHHH
Confidence 7776666553234433222233332222 2333444555677777765
No 323
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.12 E-value=0.016 Score=54.06 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPE 292 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~ 292 (435)
=++|.|+||+|||++|+++..-+|.
T Consensus 24 ~lLl~GppGtGKTmlA~~l~~lLP~ 48 (206)
T PF01078_consen 24 HLLLIGPPGTGKTMLARRLPSLLPP 48 (206)
T ss_dssp -EEEES-CCCTHHHHHHHHHHCS--
T ss_pred CeEEECCCCCCHHHHHHHHHHhCCC
Confidence 4789999999999999999988874
No 324
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.11 E-value=0.016 Score=51.90 Aligned_cols=26 Identities=38% Similarity=0.477 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+.++.++|.+||||||+++++...+.
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999998765
No 325
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.10 E-value=0.02 Score=47.83 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCChhHHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWV 287 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~ 287 (435)
.+++.+.|++||||||+++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 5889999999999999999987
No 326
>PHA02244 ATPase-like protein
Probab=95.10 E-value=0.043 Score=55.66 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=24.8
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls 299 (435)
|+|.|+||+||||+|+.++..+. ..++.++
T Consensus 122 VLL~GppGtGKTtLA~aLA~~lg-~pfv~In 151 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEALD-LDFYFMN 151 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-CCEEEEe
Confidence 67899999999999999998765 3366665
No 327
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.09 E-value=0.016 Score=52.08 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=18.3
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..+.+++++|.||+||||+.+.+.....
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3468999999999999999998876543
No 328
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.09 E-value=0.35 Score=53.87 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=19.6
Q ss_pred EEEEccCCCChhHHHHHHHhhC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~ 290 (435)
++++|+||+|||++|+.++...
T Consensus 206 ~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 206 PLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998764
No 329
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.08 E-value=0.021 Score=58.62 Aligned_cols=38 Identities=16% Similarity=-0.025 Sum_probs=28.9
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL 302 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ 302 (435)
.+-||-++|.+||||||+++.+...+. +.....|+.|.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDD 250 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDD 250 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECC
Confidence 578899999999999999999976553 22355666664
No 330
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.07 E-value=0.1 Score=55.77 Aligned_cols=111 Identities=14% Similarity=0.119 Sum_probs=59.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEecc-------HHHHHHhcc--------CCCccCC-CC-hH--HHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGT-------NLILEQMKV--------PGLLRKH-NY-SE--RFQCL 325 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls~-------D~ir~~~~~--------~G~~~~~-~~-~~--~~~~~ 325 (435)
.+.+.++|++||||||+++-+...++ ..+-+.++. +.+|+.... .|..++. .+ .+ .-+++
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i 440 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEEL 440 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHH
Confidence 57889999999999999999987654 233444443 122222221 1111110 01 00 01222
Q ss_pred HHHHHH-HHHHHHHHHhcCCCeEEEe--CCCcCHHHHHHHHHHHhcC-CcEEEEEEC
Q 013831 326 MGRANA-IFDVLLSRASRTPRNFIID--QTNVFKSARKRKLRLFVNF-RKIAVVVFP 378 (435)
Q Consensus 326 ~~~~~~-~~~~ll~~al~~g~~vIlD--~Tn~~~~~R~~~~~~~~~~-~~~~vv~l~ 378 (435)
.+.++. .+.+.+. .+..|.+..+. ..|++..+|++ +..++.. .+..++.++
T Consensus 441 ~~al~~a~l~~~i~-~lp~GldT~ige~G~~LSGGQrQR-iaiARall~~~~iliLD 495 (529)
T TIGR02868 441 WAALERVGLADWLR-SLPDGLDTVLGEGGARLSGGERQR-LALARALLADAPILLLD 495 (529)
T ss_pred HHHHHHcCCHHHHH-hCcccccchhccccCcCCHHHHHH-HHHHHHHhcCCCEEEEe
Confidence 222221 1223332 24567766665 37899999997 6666653 455565663
No 331
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.07 E-value=0.044 Score=57.94 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=28.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ 302 (435)
++-|+|.|+||+|||++|+.++.+... .++.++...
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~-~~~~l~~~~ 294 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQL-PLLRLDVGK 294 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC-CEEEEEhHH
Confidence 567899999999999999999998753 356665443
No 332
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.07 E-value=0.25 Score=52.59 Aligned_cols=27 Identities=22% Similarity=0.080 Sum_probs=23.5
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
-+.+++++|+||+||||+|+.+++.+.
T Consensus 35 l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 35 LGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357789999999999999999988753
No 333
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.06 E-value=0.096 Score=47.30 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
.+.+.+.|++|+||||+-+.++.--
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhcc
Confidence 5788999999999999999998753
No 334
>PRK06921 hypothetical protein; Provisional
Probab=95.04 E-value=0.32 Score=47.32 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=27.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC---ccEEEeccHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE---KRYILLGTNLILE 305 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~---~~~~~ls~D~ir~ 305 (435)
..-+++.|.||+|||++|..++..+.. ..++.++...++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~ 159 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG 159 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH
Confidence 456899999999999999999876432 2344555444333
No 335
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.02 E-value=0.015 Score=52.65 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.1
Q ss_pred EEEEccCCCChhHHHHHHHhhC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~ 290 (435)
|++.|.||+||||+.+++.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999988776
No 336
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=95.00 E-value=0.014 Score=64.67 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=29.4
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~ 306 (435)
+|.+.|+|||||||+|+.+++.++ +..+++..+.+.
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~---~~~~~~g~~~r~ 38 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLG---YAYLDTGAMYRA 38 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEeecCcEeHH
Confidence 688999999999999999999987 566666555443
No 337
>PF13479 AAA_24: AAA domain
Probab=94.98 E-value=0.049 Score=51.10 Aligned_cols=30 Identities=33% Similarity=0.517 Sum_probs=24.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D 301 (435)
+.-+++.|.||+||||+|..+ +. .++|++|
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k--~l~id~E 32 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PK--PLFIDTE 32 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CC--eEEEEeC
Confidence 456889999999999999998 32 5677665
No 338
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.97 E-value=0.051 Score=59.97 Aligned_cols=110 Identities=18% Similarity=0.182 Sum_probs=60.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEE--------eccHHHHHHhcc-C-------CCccCC----CChHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYIL--------LGTNLILEQMKV-P-------GLLRKH----NYSERFQC 324 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~--------ls~D~ir~~~~~-~-------G~~~~~----~~~~~~~~ 324 (435)
.+.|.++|.+||||||+++-+..-+.. .+-+. ++.+.+|+.++. . |..++. ......++
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~ 578 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEE 578 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHH
Confidence 577899999999999999999876532 11222 333566776652 1 222211 00111233
Q ss_pred HHHHHHHH-HHHHHHHHhcCCCeEEE--eCCCcCHHHHHHHHHHHhcC-CcEEEEEE
Q 013831 325 LMGRANAI-FDVLLSRASRTPRNFII--DQTNVFKSARKRKLRLFVNF-RKIAVVVF 377 (435)
Q Consensus 325 ~~~~~~~~-~~~ll~~al~~g~~vIl--D~Tn~~~~~R~~~~~~~~~~-~~~~vv~l 377 (435)
+++.|+.+ .+..+ ..+-.|.+.+| .+.|++-.+|++ +..++.. .+-.++.+
T Consensus 579 i~~A~~~ag~~~fI-~~lP~gy~t~v~E~G~~LSGGQrQr-lalARaLl~~P~ILlL 633 (709)
T COG2274 579 IIEAAQLAGAHEFI-ENLPMGYDTPVGEGGANLSGGQRQR-LALARALLSKPKILLL 633 (709)
T ss_pred HHHHHHHhCcHHHH-HhcccccccccccCCCCCCHHHHHH-HHHHHHhccCCCEEEE
Confidence 44433321 12222 33456766555 347888888886 5666553 34445555
No 339
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.96 E-value=0.37 Score=44.31 Aligned_cols=112 Identities=12% Similarity=0.093 Sum_probs=60.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC--C-CccEEEeccH-----HHHHHhccCCCccCCCCh--HHHHHHH------HH-
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH--P-EKRYILLGTN-----LILEQMKVPGLLRKHNYS--ERFQCLM------GR- 328 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~--~-~~~~~~ls~D-----~ir~~~~~~G~~~~~~~~--~~~~~~~------~~- 328 (435)
.+++.++|++||||||+.+.++... + ..+-+.++.. .++..+..... ....+. ..++.+. ..
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q-~~~~~~~~t~~~~i~~~~~~~~LS 113 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQ-DDILHPTLTVRETLMFAAKLRGLS 113 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccC-cccCCCCCcHHHHHHHHHHhccCC
Confidence 5789999999999999999998875 3 2233333221 12222221110 001111 1111111 00
Q ss_pred -HHHHHHHHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC--cEEEEEEC
Q 013831 329 -ANAIFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFP 378 (435)
Q Consensus 329 -~~~~~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~ 378 (435)
-++..-.++.+.+.....+|+|. +.++...|+..++.+.... ..+++++.
T Consensus 114 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~s 168 (194)
T cd03213 114 GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSI 168 (194)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 00111123334456778899996 6788888888777776542 34555553
No 340
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.94 E-value=0.31 Score=51.83 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=23.9
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
-+..++++|+||+||||+|+.+++.+.
T Consensus 42 i~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 42 LAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 356789999999999999999998764
No 341
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.91 E-value=0.03 Score=57.76 Aligned_cols=38 Identities=32% Similarity=0.262 Sum_probs=29.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC---CCccEEEeccHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTNLI 303 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~---~~~~~~~ls~D~i 303 (435)
..+++++|++||||||.+.+++... .+..+.+++.|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~ 263 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNY 263 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccch
Confidence 5789999999999999999998643 2334667777763
No 342
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.89 E-value=0.015 Score=48.29 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.4
Q ss_pred EEEEccCCCChhHHHHHHHhhC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~ 290 (435)
|++.|.||.|||++|+.|++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999988664
No 343
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.88 E-value=0.025 Score=57.56 Aligned_cols=39 Identities=26% Similarity=0.259 Sum_probs=29.6
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC----CCccEEEeccHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLI 303 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~----~~~~~~~ls~D~i 303 (435)
+..+++++|++|+||||.+.+++..+ +.+.+..++.|..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 35799999999999999999998642 2234556777764
No 344
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.85 E-value=0.27 Score=51.61 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=29.3
Q ss_pred EEEEEccCCCChhHHHHHHHhh----CCCccEEEeccHHHHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD----HPEKRYILLGTNLILEQ 306 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~----~~~~~~~~ls~D~ir~~ 306 (435)
-+++.|.+|+|||++++.++.. .++..++.++.+++...
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~ 185 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARK 185 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 3689999999999999988763 34455677877766544
No 345
>PRK13764 ATPase; Provisional
Probab=94.84 E-value=0.085 Score=56.97 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~ 292 (435)
...|+++|+|||||||+++.++...+.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 456899999999999999999877653
No 346
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=94.84 E-value=0.032 Score=49.78 Aligned_cols=25 Identities=24% Similarity=0.423 Sum_probs=21.8
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPE 292 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~ 292 (435)
+++++|.+||||||+.+.+.+...+
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~~ 26 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQHG 26 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcccC
Confidence 6789999999999999999877543
No 347
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.84 E-value=0.057 Score=60.16 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=29.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir 304 (435)
+.-+++.|+||+|||++|+.++.+.. ..++.++..++.
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~-~~fi~v~~~~l~ 524 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESG-ANFIAVRGPEIL 524 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcC-CCEEEEehHHHh
Confidence 34578999999999999999998876 346677655443
No 348
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=94.82 E-value=0.024 Score=50.26 Aligned_cols=24 Identities=21% Similarity=0.273 Sum_probs=21.2
Q ss_pred eEEEEEccCCCChhHHHHHHHhhC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~ 290 (435)
.-++++|.+|+||||+|..+.+..
T Consensus 15 ~gvLi~G~sG~GKStlal~L~~~g 38 (149)
T cd01918 15 IGVLITGPSGIGKSELALELIKRG 38 (149)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 568999999999999999988763
No 349
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.32 Score=52.26 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=30.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE 305 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~ 305 (435)
++=|++-|+||+||||+|+.++.+.. .+++.+.--+++.
T Consensus 468 pkGVLlyGPPGC~KT~lAkalAne~~-~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 468 PKGVLLYGPPGCGKTLLAKALANEAG-MNFLSVKGPELFS 506 (693)
T ss_pred CceEEEECCCCcchHHHHHHHhhhhc-CCeeeccCHHHHH
Confidence 68899999999999999999998765 3466665544443
No 350
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.81 E-value=0.27 Score=46.38 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=29.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ 302 (435)
..-++++|+.|+||+|+..++.+++++.--..+|.+.
T Consensus 37 ~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~tt 73 (231)
T KOG0707|consen 37 FKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTT 73 (231)
T ss_pred CceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCC
Confidence 4778999999999999999999999863334555543
No 351
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.80 E-value=0.17 Score=50.24 Aligned_cols=138 Identities=19% Similarity=0.154 Sum_probs=67.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEeccHHHHHHhccCC-CccCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPG-LLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D~ir~~~~~~G-~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~ 343 (435)
...++++|.+||||||+.+.+....+. .+.+.+ ++. .++.+.. ..-...+...-+. ...-.+.+++..+++.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~i--ed~-~El~~~~~~~~~l~~~~~~~~---~~~~~~~~~l~~~Lr~ 217 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIITI--EDT-REIFLPHPNYVHLFYSKGGQG---LAKVTPKDLLQSCLRM 217 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccccEEEE--cCc-cccCCCCCCEEEEEecCCCCC---cCccCHHHHHHHHhcC
Confidence 468999999999999999999988763 234444 322 2222111 0000000000000 0001122345555565
Q ss_pred C-CeEEEeCCCcCHHHHHHHHHHHhcCCc--EEEEEECChHHHHHHHHHhhh--hcCCCCcHHHHHHHH-hccc
Q 013831 344 P-RNFIIDQTNVFKSARKRKLRLFVNFRK--IAVVVFPKPEDLKIRSVKRFK--EMGKEVPADAVNNML-ANYV 411 (435)
Q Consensus 344 g-~~vIlD~Tn~~~~~R~~~~~~~~~~~~--~~vv~l~~~ee~~~R~~~R~~--~~~~~vp~~vi~~m~-~~fe 411 (435)
. ..+|+|-.- ..+.. .+++.+..-+. +..+.-.+......|+..... ..+...|.+++.++. +.+.
T Consensus 218 ~pd~ii~gE~r-~~e~~-~~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~~~~i~~~~d 289 (308)
T TIGR02788 218 RPDRIILGELR-GDEAF-DFIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYIVKLVREVID 289 (308)
T ss_pred CCCeEEEeccC-CHHHH-HHHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHHHHHHHHhCC
Confidence 4 456666643 33332 23444433222 233333445666888876643 123456777776553 3444
No 352
>PRK08181 transposase; Validated
Probab=94.80 E-value=0.2 Score=48.91 Aligned_cols=41 Identities=17% Similarity=0.266 Sum_probs=28.9
Q ss_pred eEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccHHHHHHh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTNLILEQM 307 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D~ir~~~ 307 (435)
+-++++|+||+|||++|..++... .+..++.++..+++..+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 448999999999999999987532 22335556666665554
No 353
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.77 E-value=0.028 Score=55.65 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=28.2
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D 301 (435)
....+|.++|+|||||||++..+...+. +..+.+|+.|
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D 71 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD 71 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 3578999999999999999999876532 2235566555
No 354
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.11 Score=55.31 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=31.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE 305 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~ 305 (435)
++=|++.|+||+|||.+|+.++.++. -.++.|+.-+|.-
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel~-vPf~~isApeivS 261 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGELG-VPFLSISAPEIVS 261 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhcC-CceEeecchhhhc
Confidence 46689999999999999999999875 3377888776643
No 355
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.75 E-value=0.018 Score=54.21 Aligned_cols=21 Identities=43% Similarity=0.764 Sum_probs=19.5
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|++.|.|||||||++++++..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 578999999999999999988
No 356
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.75 E-value=0.056 Score=52.19 Aligned_cols=38 Identities=21% Similarity=0.436 Sum_probs=27.8
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D 301 (435)
+...++++.|.||||||+|+.+++.+.- +...+.++++
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~ 60 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE 60 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 3468999999999999999999875421 2335566665
No 357
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.74 E-value=0.066 Score=57.70 Aligned_cols=110 Identities=15% Similarity=0.226 Sum_probs=62.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEe--------ccHHHHHHhcc--------CCCccCC-CCh-H--HHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILL--------GTNLILEQMKV--------PGLLRKH-NYS-E--RFQC 324 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~l--------s~D~ir~~~~~--------~G~~~~~-~~~-~--~~~~ 324 (435)
.+.+.++|.+||||||+++-+.+-++. .+-+.+ +.+.+|+.+.. .|..++. .+. + .-++
T Consensus 355 Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~ee 434 (567)
T COG1132 355 GEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEE 434 (567)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHH
Confidence 567789999999999999999987653 223333 23345555441 1111110 011 0 1133
Q ss_pred HHHHHHHH-HHHHHHHHhcCCCeEEEe--CCCcCHHHHHHHHHHHhcC-CcEEEEEE
Q 013831 325 LMGRANAI-FDVLLSRASRTPRNFIID--QTNVFKSARKRKLRLFVNF-RKIAVVVF 377 (435)
Q Consensus 325 ~~~~~~~~-~~~ll~~al~~g~~vIlD--~Tn~~~~~R~~~~~~~~~~-~~~~vv~l 377 (435)
+.+.++.+ +.+.++. +.+|.+.++. ..+++..+|++ +..++.. .+-.++.+
T Consensus 435 i~~a~k~a~~~d~I~~-lp~g~dt~vge~G~~LSgGQrQr-laiARall~~~~ILIL 489 (567)
T COG1132 435 IEEALKLANAHEFIAN-LPDGYDTIVGERGVNLSGGQRQR-LAIARALLRNPPILIL 489 (567)
T ss_pred HHHHHHHhChHHHHHh-CcccccceecCCCccCCHHHHHH-HHHHHHHhcCCCEEEE
Confidence 44433332 3444433 3568888887 47899999987 6666653 33344444
No 358
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.72 E-value=0.023 Score=49.83 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.5
Q ss_pred EEEEEccCCCChhHHHHHHHhhCC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+|++||..+|||||+++.|...+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 689999999999999999987654
No 359
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.72 E-value=0.027 Score=52.49 Aligned_cols=30 Identities=30% Similarity=0.408 Sum_probs=25.5
Q ss_pred CCCcceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 262 ~~~~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+.+...+|.++|.+|||||||.++++..+.
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445688999999999999999999987743
No 360
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.11 Score=55.46 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=26.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls 299 (435)
+.=|+|||+||+|||-+|+..+.+.. .+++.|-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag-~NFisVK 577 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAG-ANFISVK 577 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhcc-CceEeec
Confidence 46689999999999999999998865 3366653
No 361
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.69 E-value=0.024 Score=55.84 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=23.5
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhC
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
.+.+++++.||+||||||++|.+.+-.
T Consensus 52 ~~GeIfViMGLSGSGKSTLvR~~NrLi 78 (386)
T COG4175 52 EEGEIFVIMGLSGSGKSTLVRLLNRLI 78 (386)
T ss_pred cCCeEEEEEecCCCCHHHHHHHHhccC
Confidence 457899999999999999999987654
No 362
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.67 E-value=0.025 Score=58.01 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=30.5
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC------CccEEEeccHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP------EKRYILLGTNLI 303 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~------~~~~~~ls~D~i 303 (435)
.+.+|+++|++|+||||.+.+++..+. ++.+.+++.|..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~ 217 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY 217 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc
Confidence 467999999999999999999986542 344667777753
No 363
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=94.67 E-value=0.026 Score=49.05 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~ 289 (435)
+..|+++|.|||||||++..+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999998754
No 364
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.66 E-value=0.083 Score=56.03 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+.=++|.|+||+|||++|+.++..+.
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhc
Confidence 34589999999999999999998864
No 365
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.65 E-value=0.027 Score=51.02 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=24.1
Q ss_pred EEEEEccCCCChhHHHHHHHhhC--CCccEEEecc
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGT 300 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~ 300 (435)
++++.|.||+|||+++.+++... .+..+..++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 36899999999999999876532 2234666665
No 366
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.63 E-value=0.15 Score=56.48 Aligned_cols=39 Identities=28% Similarity=0.285 Sum_probs=30.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC----CCccEEEeccHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLIL 304 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~----~~~~~~~ls~D~ir 304 (435)
.++|+|+|+.|+||||.+.+++..+ +.+.+.+++.|..|
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 5799999999999999999998654 22345677777654
No 367
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.62 E-value=0.042 Score=53.99 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=27.6
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEec
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLG 299 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls 299 (435)
....++-++|.|||||||+.+++...+.. .+..+|.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~ 138 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIE 138 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEEC
Confidence 34789999999999999999999887542 2344443
No 368
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=94.61 E-value=0.032 Score=55.14 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=31.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
+.+|+++|+.|||||-+|-.|+++++ ..+||.|.+
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~---~eIIs~DSm 37 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLG---GEIISLDSM 37 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcC---CcEEecchh
Confidence 67999999999999999999999998 578888864
No 369
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.61 E-value=0.023 Score=48.85 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=26.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEec
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls 299 (435)
.+++.++|.+||||||+.+.++...+ ..+.+.++
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~ 45 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILIN 45 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEET
T ss_pred CCEEEEEccCCCccccceeeecccccccccccccc
Confidence 57899999999999999999987764 22344444
No 370
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=94.59 E-value=0.043 Score=50.98 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=21.7
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..+.++|.+||||||+.+++...++
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4678899999999999999987754
No 371
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.58 E-value=0.25 Score=52.94 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=23.3
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
-+..+|++|+||+||||+|+.+++.+.
T Consensus 37 l~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 37 VHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999998654
No 372
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.56 E-value=0.61 Score=46.83 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+..++++|+||+||||+|+.+++.+.
T Consensus 36 ~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 36 AHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56889999999999999999987753
No 373
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.54 E-value=0.022 Score=50.81 Aligned_cols=24 Identities=46% Similarity=0.548 Sum_probs=21.0
Q ss_pred EEEEEccCCCChhHHHHHHHhhCC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~ 291 (435)
++.++|.+||||||+++++...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~ 24 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK 24 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 478899999999999999988754
No 374
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.51 E-value=0.31 Score=49.26 Aligned_cols=26 Identities=19% Similarity=0.242 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..+++++|++||||||+.+.+....+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 47899999999999999999887554
No 375
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.50 E-value=0.74 Score=49.80 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=23.7
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
-+..++++|++|+||||+|+.+++.+.
T Consensus 34 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 34 INHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467889999999999999999998754
No 376
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=94.50 E-value=0.02 Score=54.02 Aligned_cols=32 Identities=19% Similarity=0.415 Sum_probs=20.8
Q ss_pred EEEEccCCCChhHHHHHH---HhhCCCccEEEeccH
Q 013831 269 MMMVGLPASGKTTWAEKW---VKDHPEKRYILLGTN 301 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l---~~~~~~~~~~~ls~D 301 (435)
-+++|+|||||||+.... .+..+ .++.+++-|
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~g-r~~~vVNLD 39 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIG-RPVAVVNLD 39 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhC-CceEEEecC
Confidence 367899999999997544 33332 224555555
No 377
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.49 E-value=0.034 Score=55.53 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=25.4
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~ 300 (435)
-|++.|+||+||||+|+.+++.++.. ++.++-
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~~-~~rV~~ 97 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNWP-CVRVNL 97 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCCC-eEEEEe
Confidence 48899999999999999999987632 444433
No 378
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.46 E-value=0.038 Score=52.58 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=25.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D 301 (435)
..++++.|.||+||||+|.+++... ++.....++++
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 5699999999999999987765432 23335555553
No 379
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=94.44 E-value=0.037 Score=54.69 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=29.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
.++|+++|+.|||||.+|-.+++.+ ..+||.|..
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~~----~eIIsaDS~ 37 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKGK----AEIINVDSI 37 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC----CcEEeccHH
Confidence 4699999999999999999999984 268888864
No 380
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.42 E-value=0.031 Score=46.66 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=19.2
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|++.|.||+||||+.+.+...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 678999999999999999964
No 381
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.41 E-value=0.48 Score=47.59 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=30.7
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQM 307 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~ 307 (435)
.-+++.|.||+|||++|..++..+- +..++.++.+++...+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 5689999999999999999887642 2346667776665554
No 382
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.41 E-value=0.46 Score=53.82 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.9
Q ss_pred EEEEccCCCChhHHHHHHHhhC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~ 290 (435)
++++|.||+||||+|+.++...
T Consensus 211 ~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 211 PILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred eeEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999865
No 383
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.40 E-value=0.03 Score=57.66 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=25.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEe
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILL 298 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~l 298 (435)
+.-|+|.|+||+||||+|+.+++.+.. .++.+
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~-~fi~v 78 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANA-PFIKV 78 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC-eEEEe
Confidence 356899999999999999999998752 24444
No 384
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.35 E-value=0.037 Score=57.03 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=26.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~ 300 (435)
+.-|+|+|+||+||||+|+.+++.+. ..++.++.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~-~~fi~vD~ 83 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLAN-APFIKVEA 83 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC-Chheeecc
Confidence 35689999999999999999998875 23555543
No 385
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.067 Score=57.88 Aligned_cols=43 Identities=16% Similarity=0.332 Sum_probs=34.6
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
-+..+++++|+||.|||++++.+++.++. .|+++|---+|++-
T Consensus 348 ~kGpILcLVGPPGVGKTSLgkSIA~al~R-kfvR~sLGGvrDEA 390 (782)
T COG0466 348 LKGPILCLVGPPGVGKTSLGKSIAKALGR-KFVRISLGGVRDEA 390 (782)
T ss_pred CCCcEEEEECCCCCCchhHHHHHHHHhCC-CEEEEecCccccHH
Confidence 34579999999999999999999999874 48888875555543
No 386
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.29 E-value=0.031 Score=59.59 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..+++++|+||+||||+|+.+++.+.
T Consensus 103 ~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 103 KQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHH
Confidence 46999999999999999999987654
No 387
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=94.29 E-value=0.039 Score=56.26 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=25.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCc
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK 293 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~ 293 (435)
.+.+|.++|++||||||+++++.+.+..+
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~ 32 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSER 32 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhC
Confidence 46789999999999999999999887643
No 388
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.28 E-value=0.65 Score=50.22 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+..+++.|+||+||||+|+.+++.+.
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhc
Confidence 56789999999999999999998753
No 389
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=94.28 E-value=0.093 Score=55.11 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+-++.++|+||.||||+++.+.+...
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~t 94 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRFT 94 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHHHH
Confidence 56777999999999999999988764
No 390
>PRK13768 GTPase; Provisional
Probab=94.28 E-value=0.04 Score=53.22 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=26.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D 301 (435)
+.++++.|++||||||++..++..+. ++++.+++.|
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D 39 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLD 39 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECC
Confidence 46889999999999999888875432 2346666555
No 391
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.27 E-value=0.043 Score=41.06 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=18.7
Q ss_pred eEEEEEccCCCChhHHHHHHHh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVK 288 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~ 288 (435)
.+.++.|..||||||+...+.-
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999877653
No 392
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.22 E-value=0.043 Score=58.38 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=24.3
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
...+++|+|+||+||||.++.+++++.
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356999999999999999999999875
No 393
>CHL00176 ftsH cell division protein; Validated
Probab=94.20 E-value=0.13 Score=56.12 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=28.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
++-+++.|+||+|||++|+.++.+.. ..++.++...+
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~-~p~i~is~s~f 252 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAE-VPFFSISGSEF 252 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC-CCeeeccHHHH
Confidence 45589999999999999999998764 33666665544
No 394
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=94.19 E-value=0.098 Score=57.78 Aligned_cols=111 Identities=19% Similarity=0.205 Sum_probs=59.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEe--------ccHHHHHHhcc--------CCCccCC-CC-hH-HHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILL--------GTNLILEQMKV--------PGLLRKH-NY-SE-RFQCL 325 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~l--------s~D~ir~~~~~--------~G~~~~~-~~-~~-~~~~~ 325 (435)
.+.+.++|.+||||||+++-++..++ ..+-+.+ +.+.+|+.+.. .|..++. .+ .+ .-+++
T Consensus 479 Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i 558 (686)
T TIGR03797 479 GEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEA 558 (686)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHH
Confidence 57789999999999999999987653 2223333 33455555431 1211110 00 00 01222
Q ss_pred HHHHHH-HHHHHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhc-CCcEEEEEEC
Q 013831 326 MGRANA-IFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVN-FRKIAVVVFP 378 (435)
Q Consensus 326 ~~~~~~-~~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~-~~~~~vv~l~ 378 (435)
.+.++. .+.+.+ ..+..|.+.++.. .|++..+|++ +..++. +.+..++.++
T Consensus 559 ~~al~~a~l~~~i-~~lp~G~dt~ige~G~~LSGGQrQR-ialARAll~~p~iLiLD 613 (686)
T TIGR03797 559 WEAARMAGLAEDI-RAMPMGMHTVISEGGGTLSGGQRQR-LLIARALVRKPRILLFD 613 (686)
T ss_pred HHHHHHcCcHHHH-HhccccccccccCCCCCCCHHHHHH-HHHHHHHhcCCCEEEEe
Confidence 222221 122333 2245676655543 6788888887 666665 3445555553
No 395
>PRK05636 replicative DNA helicase; Provisional
Probab=94.17 E-value=0.46 Score=50.53 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=21.4
Q ss_pred CcceEEEEEccCCCChhHHHHHHHh
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVK 288 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~ 288 (435)
....++++.|-||+||||||-.++.
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~ 287 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMR 287 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHH
Confidence 3468999999999999999887764
No 396
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.16 E-value=0.12 Score=51.58 Aligned_cols=118 Identities=19% Similarity=0.150 Sum_probs=66.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEeccHHHHHHhccC-CCccCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVP-GLLRKHNYSERFQCLMGRANAIFDVLLSRASRT 343 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D~ir~~~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~ 343 (435)
.+=|++||.+||||||+...+....|. .+.+.+ ++.. ++.+. ..+-.....+.... .....+..++..|++.
T Consensus 143 ~~siii~G~t~sGKTt~lnall~~Ip~~~rivtI--Edt~-E~~~~~~n~~~l~~r~~~~~---~~~v~~~dll~aalR~ 216 (312)
T COG0630 143 RKSIIICGGTASGKTTLLNALLDFIPPEERIVTI--EDTP-ELKLPHENWVQLVTREGESG---SSEVSLEDLLRAALRQ 216 (312)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCchhcEEEE--eccc-cccCCCCCEEEEEecCCCCC---ccccCHHHHHHHHHhc
Confidence 356889999999999999999887763 223333 3322 22222 11100000000000 1112334577888899
Q ss_pred CCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECChHHHHHHHHHh
Q 013831 344 PRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKPEDLKIRSVKR 390 (435)
Q Consensus 344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~ee~~~R~~~R 390 (435)
+-+.||.+.--..+... .++....-+ .+..+...+++...+|+...
T Consensus 217 rPd~IivgEvrg~e~~~-~~~a~~tGh~~isT~ha~s~~~~~~rl~~~ 263 (312)
T COG0630 217 RPDYIIVGELRGREAFV-LFQAMQTGHGTISTIHADSPELVLDRLTEL 263 (312)
T ss_pred CCCeEEEeeeecHHHHH-HHHHHhcCCCceeEEecCCHHHHHHHHhhc
Confidence 99988888744443333 344444333 45555666678888898875
No 397
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.16 E-value=0.045 Score=50.81 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=27.6
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D 301 (435)
...++.++|+|||||||++.+++... .+...+.++++
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 46899999999999999999887532 12335666664
No 398
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=94.15 E-value=0.034 Score=49.93 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=18.9
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.||+||||+++++...
T Consensus 4 v~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 4 IAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999999854
No 399
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.12 E-value=0.45 Score=49.92 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+..+++.|+||+||||+|+.+++.+.
T Consensus 39 ~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 39 AHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 57789999999999999999988753
No 400
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.09 E-value=0.046 Score=51.11 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=27.7
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D 301 (435)
...++++.|.|||||||++..++.... +...+.++++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 468999999999999999999885531 2235566554
No 401
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=94.09 E-value=0.038 Score=47.61 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=18.9
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.|||||||+..++...
T Consensus 3 i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 688999999999999999754
No 402
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.09 E-value=0.62 Score=50.79 Aligned_cols=27 Identities=26% Similarity=0.170 Sum_probs=24.0
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
-+..++++|+||.||||+|+.+++.+.
T Consensus 36 l~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 36 LHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999998764
No 403
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.08 E-value=0.044 Score=48.42 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=25.0
Q ss_pred EEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D 301 (435)
++.++|.+||||||++..++..+ .+.++.++..|
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 36789999999999999987654 12345666555
No 404
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.08 E-value=0.21 Score=58.52 Aligned_cols=112 Identities=16% Similarity=0.233 Sum_probs=63.3
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEeccHHH--HHHhc-cCCCccC-----CCC-hHHHHHHHHHHHHHH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLI--LEQMK-VPGLLRK-----HNY-SERFQCLMGRANAIF 333 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D~i--r~~~~-~~G~~~~-----~~~-~~~~~~~~~~~~~~~ 333 (435)
+..+++.+||..|||||++...+..+++. .+.+.++.... =++-. .+|..++ ..| .++|++.++.| ++
T Consensus 545 ~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC--~L 622 (1381)
T KOG0054|consen 545 KKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKAC--AL 622 (1381)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHc--cC
Confidence 34689999999999999999999988763 11222222100 00000 1233222 123 34456666655 24
Q ss_pred HHHHHHHhcCCCe-EEEeC-CCcCHHHHHHHHHHHhc-CCcEEEEEECC
Q 013831 334 DVLLSRASRTPRN-FIIDQ-TNVFKSARKRKLRLFVN-FRKIAVVVFPK 379 (435)
Q Consensus 334 ~~ll~~al~~g~~-vIlD~-Tn~~~~~R~~~~~~~~~-~~~~~vv~l~~ 379 (435)
++-++. +-.|.. .|=|. .|++-.+|+| +.+++. |++..++.+++
T Consensus 623 ~~Dle~-Lp~GD~TeIGErGinLSGGQKqR-IsLARAVY~~adIYLLDD 669 (1381)
T KOG0054|consen 623 KKDLEI-LPFGDLTEIGERGINLSGGQKQR-ISLARAVYQDADIYLLDD 669 (1381)
T ss_pred HhHHhh-cCCCCcceecCCccCCcHhHHHH-HHHHHHHhccCCEEEEcC
Confidence 444443 344543 33343 6788888887 777776 65556666654
No 405
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.04 E-value=0.039 Score=48.46 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.3
Q ss_pred eEEEEEccCCCChhHHHHHHHhh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~ 289 (435)
+=||++|..||||||+++.|...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 44799999999999999999764
No 406
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.02 E-value=0.058 Score=52.23 Aligned_cols=37 Identities=14% Similarity=0.330 Sum_probs=27.2
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D 301 (435)
...+++++|.||+||||++.+++... .+...+.++.+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 46799999999999999999886531 22335566654
No 407
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.01 E-value=0.039 Score=47.57 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=18.5
Q ss_pred EEEEccCCCChhHHHHHHHhhCCC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPE 292 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~ 292 (435)
+++-|.||.||||+|+.+++....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~ 25 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL 25 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-
T ss_pred EeeECCCccHHHHHHHHHHHHcCC
Confidence 688999999999999999998874
No 408
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.98 E-value=0.68 Score=49.37 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=23.7
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
-+..++++|+||.||||+|+.+++.+.
T Consensus 37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 37 LHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 356789999999999999999998764
No 409
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=93.97 E-value=0.047 Score=46.20 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=25.2
Q ss_pred EEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D 301 (435)
|++.|.+|+||||++..++..+. +.++.++..|
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D 36 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDAD 36 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 68999999999999988876432 3346667766
No 410
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.95 E-value=0.35 Score=50.60 Aligned_cols=110 Identities=20% Similarity=0.205 Sum_probs=60.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEeccHHHH----HHhc-cCCCccC--CC-----------Ch--HHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTNLIL----EQMK-VPGLLRK--HN-----------YS--ERFQC 324 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls~D~ir----~~~~-~~G~~~~--~~-----------~~--~~~~~ 324 (435)
.+.+-++|++||||||+||.+..-.+ ....++|..-+++ ++++ +.|-+.+ .. |. ..-++
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~k 441 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEK 441 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHH
Confidence 46788999999999999999986543 2346777554443 3443 1222110 01 11 01133
Q ss_pred HHHHHHHH-HHHHHHHHhcCCCeEEE-e-CCCcCHHHHHHHHHHHhc-CCcEEEEEE
Q 013831 325 LMGRANAI-FDVLLSRASRTPRNFII-D-QTNVFKSARKRKLRLFVN-FRKIAVVVF 377 (435)
Q Consensus 325 ~~~~~~~~-~~~ll~~al~~g~~vIl-D-~Tn~~~~~R~~~~~~~~~-~~~~~vv~l 377 (435)
+++.++.. .++++ ..+.+|++..| | ...++..+|++ +-+.+. |++-.+|++
T Consensus 442 IieAA~lAgvHelI-l~lP~GYdT~iG~~G~~LSgGQRQR-IaLARAlYG~P~lvVL 496 (580)
T COG4618 442 VIEAARLAGVHELI-LRLPQGYDTRIGEGGATLSGGQRQR-IALARALYGDPFLVVL 496 (580)
T ss_pred HHHHHHHcChHHHH-HhCcCCccCccCCCCCCCCchHHHH-HHHHHHHcCCCcEEEe
Confidence 44433321 12232 23467775444 3 25577777776 666665 565566666
No 411
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.95 E-value=0.38 Score=52.70 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=24.3
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.-+..+|++|+||+||||+|+.+++.+.
T Consensus 36 rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 36 RLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 3467899999999999999999998764
No 412
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.94 E-value=0.046 Score=56.56 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=24.7
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls 299 (435)
.-++++|+||+||||+|+.+++.+.. .++.++
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~-pf~~id 140 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDV-PFAIAD 140 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCC-Cceecc
Confidence 34789999999999999999987642 244443
No 413
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.94 E-value=0.055 Score=51.61 Aligned_cols=37 Identities=16% Similarity=0.390 Sum_probs=27.0
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D 301 (435)
...++++.|.|||||||+|.+++.+. .+...+.++.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 36799999999999999998876432 23335566653
No 414
>PHA02624 large T antigen; Provisional
Probab=93.93 E-value=0.07 Score=57.17 Aligned_cols=35 Identities=23% Similarity=0.158 Sum_probs=28.8
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls 299 (435)
+...++++.|+||||||||+..+++.+.++ .+.++
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~-vlsVN 463 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGK-SLNVN 463 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCe-EEEee
Confidence 456799999999999999999999999764 33344
No 415
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.90 E-value=0.54 Score=51.33 Aligned_cols=27 Identities=26% Similarity=0.198 Sum_probs=23.6
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
-...+|++|.||+||||+|+.+++.+.
T Consensus 37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 37 LHHAYLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 356689999999999999999998765
No 416
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=93.90 E-value=0.042 Score=46.94 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.5
Q ss_pred EEEEccCCCChhHHHHHHHhhC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~ 290 (435)
|+++|.|||||||+...+....
T Consensus 4 i~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 4 IVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6789999999999999998654
No 417
>PRK05973 replicative DNA helicase; Provisional
Probab=93.89 E-value=0.057 Score=51.61 Aligned_cols=44 Identities=9% Similarity=0.235 Sum_probs=30.3
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEecc----HHHHHHhc
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGT----NLILEQMK 308 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~----D~ir~~~~ 308 (435)
...++++.|.||+||||++-.++... .+...+.+|. +.++++|.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~ 112 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLR 112 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHH
Confidence 46799999999999999998876532 1233555554 35555554
No 418
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.89 E-value=0.24 Score=55.98 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHHHHHhhC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~ 290 (435)
=++++|+||.|||++|+.++...
T Consensus 202 n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 202 NPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999998764
No 419
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.88 E-value=0.51 Score=46.93 Aligned_cols=104 Identities=11% Similarity=0.138 Sum_probs=60.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhcc-CCCccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKV-PGLLRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~ 342 (435)
..-+++.|.||+|||++|..++..+- +..+..+....+...+.. .+ .. .+.+.++ .++
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~-------~~-----------~~~~~l~-~l~ 216 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSIS-------DG-----------SVKEKID-AVK 216 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHh-------cC-----------cHHHHHH-Hhc
Confidence 45689999999999999999987653 222445555555554420 00 00 0111222 236
Q ss_pred CCCeEEEeCC---CcCHHHHHHHHHHHhc--C-CcEEEEEECC-h-HHHHHHHH
Q 013831 343 TPRNFIIDQT---NVFKSARKRKLRLFVN--F-RKIAVVVFPK-P-EDLKIRSV 388 (435)
Q Consensus 343 ~g~~vIlD~T---n~~~~~R~~~~~~~~~--~-~~~~vv~l~~-~-ee~~~R~~ 388 (435)
.-..+|||+- ..+...|..++..+-. + .....++... + +++.++..
T Consensus 217 ~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~~ 270 (306)
T PRK08939 217 EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHLA 270 (306)
T ss_pred CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHh
Confidence 6778999984 3667777666665532 2 2444444433 4 77777663
No 420
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.87 E-value=1.1 Score=48.57 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=23.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+..+|+.|+||+||||+|+.+++.+.
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcc
Confidence 56799999999999999999998764
No 421
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=93.86 E-value=0.044 Score=48.22 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=18.7
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.||+||||+++++...
T Consensus 3 i~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678899999999999999754
No 422
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=93.85 E-value=0.046 Score=47.65 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=19.3
Q ss_pred EEEEccCCCChhHHHHHHHhhC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~ 290 (435)
|+++|.||+||||++.++....
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~~ 25 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQNH 25 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6788999999999999998643
No 423
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.85 E-value=0.049 Score=55.50 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=30.8
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccHHH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTNLI 303 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D~i 303 (435)
...++++++|++|+||||.+.+++..+ .+.++..++.|..
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 347899999999999999999988644 2234667888854
No 424
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.82 E-value=1.3 Score=40.36 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
+..+++.|+||.||||+|+.+++.+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l 38 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKAL 38 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5688999999999999999998775
No 425
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.82 E-value=0.049 Score=50.90 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=23.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++..++
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 57899999999999999999987754
No 426
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=93.79 E-value=0.21 Score=55.39 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=59.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEec--------cHHHHHHhcc--------CCCccCC-C-ChH--HHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG--------TNLILEQMKV--------PGLLRKH-N-YSE--RFQC 324 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls--------~D~ir~~~~~--------~G~~~~~-~-~~~--~~~~ 324 (435)
.+.+.++|.+||||||+++-++..++ ..+-+.++ .+.+|+.++. .|..++. . ..+ .-++
T Consensus 505 Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~ 584 (710)
T TIGR03796 505 GQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDAD 584 (710)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHH
Confidence 57889999999999999999987754 23344443 2344544431 1221110 0 000 0122
Q ss_pred HHHHHHH-HHHHHHHHHhcCCCeEEEe--CCCcCHHHHHHHHHHHhcC-CcEEEEEE
Q 013831 325 LMGRANA-IFDVLLSRASRTPRNFIID--QTNVFKSARKRKLRLFVNF-RKIAVVVF 377 (435)
Q Consensus 325 ~~~~~~~-~~~~ll~~al~~g~~vIlD--~Tn~~~~~R~~~~~~~~~~-~~~~vv~l 377 (435)
+.+.++. .+.+.+. .+..|.+.++. ..|++..+|++ +..++.. ++..++.+
T Consensus 585 i~~al~~~~l~~~i~-~lp~gl~t~i~e~G~~LSGGQrQR-iaLARall~~p~iliL 639 (710)
T TIGR03796 585 LVRACKDAAIHDVIT-SRPGGYDAELAEGGANLSGGQRQR-LEIARALVRNPSILIL 639 (710)
T ss_pred HHHHHHHhCCHHHHH-hCcCcccceeccCCCCCCHHHHHH-HHHHHHHhhCCCEEEE
Confidence 2222221 1223332 24567666554 37888888887 6666653 34555555
No 427
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=93.76 E-value=0.053 Score=52.67 Aligned_cols=26 Identities=35% Similarity=0.564 Sum_probs=23.4
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhh
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~ 289 (435)
....+|.++|.+|+||||+|+.++..
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 45789999999999999999998866
No 428
>PRK04296 thymidine kinase; Provisional
Probab=93.73 E-value=0.054 Score=49.88 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=25.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC--CCccEEEec
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLG 299 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls 299 (435)
..+++++|.||+||||.+..++.+. .++.++++.
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3688999999999999998887654 234455563
No 429
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=93.73 E-value=0.047 Score=47.48 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=18.9
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.|||||||+..++...
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999754
No 430
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.73 E-value=0.046 Score=53.45 Aligned_cols=26 Identities=38% Similarity=0.549 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+++|.++|.+||||||++.+|+..+.
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~ 26 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLS 26 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999988765
No 431
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=93.71 E-value=0.046 Score=47.88 Aligned_cols=21 Identities=14% Similarity=0.499 Sum_probs=19.0
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.|||||||+++++...
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 688999999999999999754
No 432
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.69 E-value=0.73 Score=50.06 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=24.1
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.-+.-+|++|++|.||||+|+.+++.+.
T Consensus 44 ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 44 RIAQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 3456789999999999999999998764
No 433
>PRK08760 replicative DNA helicase; Provisional
Probab=93.67 E-value=0.56 Score=49.55 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=27.2
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC---CCccEEEeccH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTN 301 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~---~~~~~~~ls~D 301 (435)
...++++.|-||.||||||-.++... .+..+..+|.+
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlE 267 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSME 267 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEecc
Confidence 36899999999999999998887532 12335566653
No 434
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=93.67 E-value=0.32 Score=43.48 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=24.6
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE 292 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~ 292 (435)
-.+.|.+.|.--|||||++++++...+.
T Consensus 7 F~K~VailG~ESsGKStLv~kLA~~fnt 34 (187)
T COG3172 7 FVKTVAILGGESSGKSTLVNKLANIFNT 34 (187)
T ss_pred hheeeeeecCcccChHHHHHHHHHHhCC
Confidence 4678899999999999999999988763
No 435
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.054 Score=51.13 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=22.6
Q ss_pred cceEEEEEccCCCChhHHHHHHHhh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~ 289 (435)
..+++.+.|+.||||||+|..++-.
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~ 53 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGH 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999999864
No 436
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.65 E-value=0.055 Score=50.38 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=23.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++..++
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 57899999999999999999998753
No 437
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.19 Score=53.23 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=27.1
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEe
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILL 298 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~l 298 (435)
..+..+++.|+||+|||.+|+.++.+... +++.+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~-~fi~v 307 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRS-RFISV 307 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCC-eEEEe
Confidence 44668999999999999999999996652 25544
No 438
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.65 E-value=0.057 Score=49.70 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|.+||||||+.+.++...+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 57899999999999999999987653
No 439
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.64 E-value=0.63 Score=48.30 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=26.9
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC---CCccEEEecc
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGT 300 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~---~~~~~~~ls~ 300 (435)
..+++++.|.||+||||||-.++... .+..+..+|.
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSl 231 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSL 231 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 36899999999999999999887432 1334556664
No 440
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=93.62 E-value=0.05 Score=47.55 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=18.9
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.||+||||+++++...
T Consensus 3 i~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 688999999999999999754
No 441
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.61 E-value=0.053 Score=50.36 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVK 288 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~ 288 (435)
.++++++|++||||||+.+.+..
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 38999999999999999998863
No 442
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.61 E-value=0.059 Score=50.08 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=23.5
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..+++.++|++||||||+++.++...+
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 358899999999999999999987643
No 443
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=0.74 Score=47.78 Aligned_cols=145 Identities=16% Similarity=0.145 Sum_probs=83.3
Q ss_pred CCCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 013831 262 NMKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341 (435)
Q Consensus 262 ~~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al 341 (435)
..++..+++-+..-|+||||.|+.|.+... |-++-.|.+ .|- -.+ +.... .++...
T Consensus 370 ~~~e~tll~pia~igcgktt~ak~l~~lf~---w~~vqnd~l------sgk-----~~~---k~~~k-------ai~~~~ 425 (758)
T COG5324 370 CGKEFTLLVPIATIGCGKTTVAKILEKLFG---WPVVQNDNL------SGK-----GGP---KRFAK-------AIIEEF 425 (758)
T ss_pred ccceeEEEEEEEEeccCcccHHHHHHHHcC---CcccccCCC------CCC-----Cch---hHHHH-------HHHHHh
Confidence 345667888889999999999999988775 656555542 231 011 11111 222233
Q ss_pred cCCC-eEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEEC---C---hHHHHHHHHHhhhhcC-CCCc------HHHHHHH
Q 013831 342 RTPR-NFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFP---K---PEDLKIRSVKRFKEMG-KEVP------ADAVNNM 406 (435)
Q Consensus 342 ~~g~-~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~---~---~ee~~~R~~~R~~~~~-~~vp------~~vi~~m 406 (435)
+.|. .|++|..|.-..+|..+-..+-.+- .+.+|-+| + |+-.++|..+|-.... -.++ ..++..+
T Consensus 426 r~~~~~v~~drnnh~~~~r~~lq~d~l~~~~~vr~v~~p~~~~~ev~e~~~~rvlqrg~~hqsik~~eg~~kv~~imn~f 505 (758)
T COG5324 426 RNGHSVVFADRNNHISNMRSTLQTDILALIDGVRFVALPFKHTPEVPEFVQNRVLQRGDRHQSIKVSEGVDKVKAIMNTF 505 (758)
T ss_pred ccCceEEEEcccchhhhhhhhhhcceEEEecCcEEEecccccCcccHHHHHHHHHhccCCccceeeccchHHHHHHHHHH
Confidence 5665 6777878877777765322222222 34555442 2 4667889888832110 1122 3567777
Q ss_pred HhcccCCCCCCCCCCCcccceecccc
Q 013831 407 LANYVLPVNKDTPGSDELFDQRRGSA 432 (435)
Q Consensus 407 ~~~fe~P~~~~~~~~~e~Fd~i~~~~ 432 (435)
++++.+-.. .-..+.-||.|+.+-
T Consensus 506 ~k~ykp~~~--~~~~d~~~d~~ield 529 (758)
T COG5324 506 YKQYKPFDA--GNKHDANYDDIIELD 529 (758)
T ss_pred HHhcCCCCC--CCCccccccceeecc
Confidence 888875543 233456678777553
No 444
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.59 E-value=0.92 Score=47.20 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=26.9
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC---CCccEEEeccH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTN 301 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~---~~~~~~~ls~D 301 (435)
...++++.|.||+|||||+..++... .+..+..+|.+
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlE 233 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLE 233 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCc
Confidence 36899999999999999998876531 22335556553
No 445
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.58 E-value=0.059 Score=50.10 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++..++
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57899999999999999999997653
No 446
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.56 E-value=0.042 Score=43.38 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=20.4
Q ss_pred EEEEEccCCCChhHHHHHHHhhCC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~ 291 (435)
++++.|.+|+||||++..++..+.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~ 24 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALA 24 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999887653
No 447
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.56 E-value=0.059 Score=50.44 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
.+++.++|++||||||+.+.++...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5789999999999999999998764
No 448
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.56 E-value=0.057 Score=50.41 Aligned_cols=26 Identities=23% Similarity=0.380 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++...+
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57899999999999999999987653
No 449
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.52 E-value=0.06 Score=49.23 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++...+
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57899999999999999999987643
No 450
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=93.51 E-value=0.052 Score=48.03 Aligned_cols=21 Identities=24% Similarity=0.548 Sum_probs=18.9
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.||+||||+++++...
T Consensus 3 i~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 688999999999999999754
No 451
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=93.51 E-value=0.13 Score=57.03 Aligned_cols=110 Identities=20% Similarity=0.247 Sum_probs=57.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEecc--------HHHHHHhcc--------CCCccCC-CCh-H--HHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGT--------NLILEQMKV--------PGLLRKH-NYS-E--RFQC 324 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~--------D~ir~~~~~--------~G~~~~~-~~~-~--~~~~ 324 (435)
.+.+.++|++||||||+++-+...++. .+-+.++. +.+++.+.. .|..++. .+. + .-++
T Consensus 507 Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~ 586 (711)
T TIGR00958 507 GEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEE 586 (711)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHH
Confidence 578999999999999999999987642 23344432 334444331 1111110 000 0 0112
Q ss_pred HHHHHHH-HHHHHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhc-CCcEEEEEE
Q 013831 325 LMGRANA-IFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVN-FRKIAVVVF 377 (435)
Q Consensus 325 ~~~~~~~-~~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~-~~~~~vv~l 377 (435)
+.+.++. .+.+.++ .+..|.+..+.. .+++..+|++ +..++. +++..++.+
T Consensus 587 i~~al~~a~l~~~i~-~lp~GldT~ige~G~~LSGGQkQR-lalARALl~~p~ILIL 641 (711)
T TIGR00958 587 IMAAAKAANAHDFIM-EFPNGYDTEVGEKGSQLSGGQKQR-IAIARALVRKPRVLIL 641 (711)
T ss_pred HHHHHHHcCCHHHHH-hCCCccCCcccCCCCcCCHHHHHH-HHHHHHHhcCCCEEEE
Confidence 2222211 1222332 245676666654 6788888886 666655 334455555
No 452
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.50 E-value=0.06 Score=50.16 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
.+++.++|++||||||+++.++...
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5789999999999999999998765
No 453
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.49 E-value=0.062 Score=50.07 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=23.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..+++.++|++||||||+.+.++...+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 357899999999999999999987643
No 454
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=93.48 E-value=0.055 Score=47.37 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=18.6
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.||+||||++.++...
T Consensus 4 i~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 4 VVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678899999999999998854
No 455
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.48 E-value=0.061 Score=50.85 Aligned_cols=26 Identities=19% Similarity=0.196 Sum_probs=23.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++..++
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57899999999999999999987754
No 456
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.47 E-value=0.06 Score=51.22 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++..++
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 57899999999999999999987653
No 457
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.46 E-value=0.064 Score=50.22 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++...+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 58999999999999999999986543
No 458
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.45 E-value=0.059 Score=56.05 Aligned_cols=38 Identities=26% Similarity=0.261 Sum_probs=29.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC----CCccEEEeccHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLI 303 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~----~~~~~~~ls~D~i 303 (435)
.++++++|++|+||||.+.+++..+ .+.++..|+.|..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 4689999999999999998887543 2345777888864
No 459
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.45 E-value=0.3 Score=47.25 Aligned_cols=103 Identities=19% Similarity=0.251 Sum_probs=57.3
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEecc--------HHH----HHHhccCCCcc----CCC--C-hHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGT--------NLI----LEQMKVPGLLR----KHN--Y-SERFQC 324 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~--------D~i----r~~~~~~G~~~----~~~--~-~~~~~~ 324 (435)
+.+.+-++|-+||||||+++.+..-.+. .+-+.+.- +.. .+.+...|... .|. + +.+.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ- 116 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ- 116 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh-
Confidence 4688999999999999999999876541 22333332 111 11121233211 111 1 11111
Q ss_pred HHHHHHHHHHHHHHHHh-cCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEE
Q 013831 325 LMGRANAIFDVLLSRAS-RTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVF 377 (435)
Q Consensus 325 ~~~~~~~~~~~ll~~al-~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l 377 (435)
+-.+.+|+ -+...+|.|- ++++.+.|.+.+.++.+.+ .+.++|+
T Consensus 117 ---------Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFI 166 (268)
T COG4608 117 ---------RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFI 166 (268)
T ss_pred ---------hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEE
Confidence 11233443 4566777775 6788888888888777542 3444444
No 460
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.45 E-value=0.062 Score=50.94 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+++.++..++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57899999999999999999997653
No 461
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=93.44 E-value=0.053 Score=54.30 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
...+++.|+||+||||+|+.++..+.
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhC
Confidence 34678999999999999999998876
No 462
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.43 E-value=0.06 Score=50.98 Aligned_cols=26 Identities=23% Similarity=0.133 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++...+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 57899999999999999999987643
No 463
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=93.41 E-value=0.058 Score=47.30 Aligned_cols=21 Identities=14% Similarity=0.403 Sum_probs=19.2
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.||+||||++.++...
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999865
No 464
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.41 E-value=0.073 Score=50.09 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=28.0
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D 301 (435)
...++++.|.||+||||++..++... .+...+.++++
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 46899999999999999999987532 12346667665
No 465
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.40 E-value=0.066 Score=49.85 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++..++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57899999999999999999997653
No 466
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.37 E-value=0.06 Score=50.15 Aligned_cols=35 Identities=20% Similarity=0.141 Sum_probs=26.5
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC-CccEEEec
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls 299 (435)
..+++.++|++||||||+.+.++...+ ..+-+.++
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~ 59 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVF 59 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEEC
Confidence 368899999999999999999987643 23334443
No 467
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.37 E-value=0.068 Score=53.68 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=24.1
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+.+|+++.|++|+||||+++.|.+.+.
T Consensus 87 ~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 87 RKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 468999999999999999999987765
No 468
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.36 E-value=0.064 Score=50.27 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
.+++.++|++||||||+.+.++...
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 5789999999999999999998754
No 469
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.34 E-value=0.093 Score=49.47 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=26.0
Q ss_pred cceEEEEEccCCCChhHHHHHHHhh--CCCccEEEecc
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKD--HPEKRYILLGT 300 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~--~~~~~~~~ls~ 300 (435)
...++++.|.||+||||++..++.. .++...+.++.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 3689999999999999999887532 22334555554
No 470
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.34 E-value=0.07 Score=50.27 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=23.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+++.++..++
T Consensus 33 Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 33 GQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCccC
Confidence 58899999999999999999987654
No 471
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=93.33 E-value=0.06 Score=47.86 Aligned_cols=21 Identities=19% Similarity=0.523 Sum_probs=18.9
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.||+||||+++++...
T Consensus 4 i~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999754
No 472
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.32 E-value=0.27 Score=53.94 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=28.6
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir 304 (435)
=++++|+||+||||+|+.++.+.+. .++.++...+.
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~-~f~~is~~~~~ 222 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKV-PFFTISGSDFV 222 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCC-CEEEEehHHhH
Confidence 3899999999999999999988753 36677665543
No 473
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.31 E-value=0.063 Score=51.68 Aligned_cols=37 Identities=24% Similarity=0.472 Sum_probs=24.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D 301 (435)
...+|=++|+||+||||+...+...+. ++++-+|..|
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVD 66 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVD 66 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEEC
Confidence 467889999999999999988876542 3334455545
No 474
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.29 E-value=0.21 Score=49.09 Aligned_cols=84 Identities=20% Similarity=0.150 Sum_probs=42.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP 344 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g 344 (435)
.-+|++.|+.||||||-...+....+. +...+|...+=++-+ +-. +...-. ++-+..-...+...+..|+++.
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~v--h~s--kkslI~--QREvG~dT~sF~~aLraALReD 198 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYV--HES--KKSLIN--QREVGRDTLSFANALRAALRED 198 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhh--hcc--hHhhhh--HHHhcccHHHHHHHHHHHhhcC
Confidence 468999999999999977666554321 113344332211111 000 000000 1111112234556677778888
Q ss_pred CeEEEeCCCcC
Q 013831 345 RNFIIDQTNVF 355 (435)
Q Consensus 345 ~~vIlD~Tn~~ 355 (435)
-+||+=.---+
T Consensus 199 PDVIlvGEmRD 209 (353)
T COG2805 199 PDVILVGEMRD 209 (353)
T ss_pred CCEEEEecccc
Confidence 88888764333
No 475
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.29 E-value=0.22 Score=47.94 Aligned_cols=104 Identities=17% Similarity=0.238 Sum_probs=56.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC---CCccEEEeccH----HHHHHhc--cCCCc----cCCCC-hHHHHHHHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTN----LILEQMK--VPGLL----RKHNY-SERFQCLMGRANA 331 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~---~~~~~~~ls~D----~ir~~~~--~~G~~----~~~~~-~~~~~~~~~~~~~ 331 (435)
..|+++.|.||+|||+||-.++... .+..+..+|.+ .+..++- ..+.. +.... ...|+++.+
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~~---- 94 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIRSGDLSDEEFERLQA---- 94 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHHH----
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhhccccCHHHHHHHHH----
Confidence 5799999999999999998887532 12346677763 3333321 12221 01111 122222221
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcC-CcEEEEEEC
Q 013831 332 IFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNF-RKIAVVVFP 378 (435)
Q Consensus 332 ~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~-~~~~vv~l~ 378 (435)
... .+.....+|.|....+...-...++.++.. ..+.+|+++
T Consensus 95 ----~~~-~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~ID 137 (259)
T PF03796_consen 95 ----AAE-KLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFID 137 (259)
T ss_dssp ----HHH-HHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEE
T ss_pred ----HHH-HHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEec
Confidence 111 123444777777777777766666666543 466666663
No 476
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.28 E-value=0.071 Score=49.74 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=23.6
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.. +++.++|++||||||+.+.++...+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 35 8999999999999999999987653
No 477
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=93.28 E-value=0.5 Score=52.26 Aligned_cols=108 Identities=16% Similarity=0.188 Sum_probs=57.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEec--------cHHHHHHhcc--------CCCccC------CCChHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG--------TNLILEQMKV--------PGLLRK------HNYSERF 322 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls--------~D~ir~~~~~--------~G~~~~------~~~~~~~ 322 (435)
.+.+.++|.+||||||+++-++..++ ..+-+.++ .+.+|+.+.. .|..++ ..++.
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~-- 568 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADD-- 568 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCH--
Confidence 57889999999999999999987654 22334443 2344444331 111111 01111
Q ss_pred HHHHHHHHH-HHHHHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcC-CcEEEEEE
Q 013831 323 QCLMGRANA-IFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNF-RKIAVVVF 377 (435)
Q Consensus 323 ~~~~~~~~~-~~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~-~~~~vv~l 377 (435)
+++.+.++. .+.+.+ ..+..|.+..+.. .|++..+|++ +..++.. .+..++.+
T Consensus 569 ~~i~~a~~~~~l~~~i-~~lp~gl~T~i~e~G~~LSgGQrQR-lalARall~~p~iliL 625 (694)
T TIGR03375 569 EEILRAAELAGVTEFV-RRHPDGLDMQIGERGRSLSGGQRQA-VALARALLRDPPILLL 625 (694)
T ss_pred HHHHHHHHHcChHHHH-HhCcccccceecCCCCCCCHHHHHH-HHHHHHHhcCCCEEEE
Confidence 222222221 123333 2345676666644 6788888886 6655543 34445555
No 478
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=93.28 E-value=0.062 Score=47.46 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.2
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.||+||||++.++...
T Consensus 3 i~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999865
No 479
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.27 E-value=0.068 Score=49.51 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++...+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 57899999999999999999987643
No 480
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.26 E-value=0.07 Score=49.61 Aligned_cols=26 Identities=27% Similarity=0.265 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++...+
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57899999999999999999987653
No 481
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.26 E-value=0.067 Score=50.45 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|.+||||||+++.++..++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 58899999999999999999987653
No 482
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.26 E-value=0.07 Score=49.35 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++...+
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 57899999999999999999997654
No 483
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.25 E-value=0.071 Score=49.93 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++...+
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57899999999999999999987654
No 484
>PLN03130 ABC transporter C family member; Provisional
Probab=93.24 E-value=0.22 Score=60.28 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=24.2
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..++++++|..||||||+++.+...++
T Consensus 642 ~Ge~vaIvG~sGSGKSTLl~lLlG~~~ 668 (1622)
T PLN03130 642 VGSLVAIVGSTGEGKTSLISAMLGELP 668 (1622)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhc
Confidence 368899999999999999999998764
No 485
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.24 E-value=0.073 Score=50.27 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.1
Q ss_pred cceEEEEEccCCCChhHHHHHHHhh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~ 289 (435)
..+++.++|.|||||||++..++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999743
No 486
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=93.24 E-value=0.06 Score=47.11 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=19.0
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.||+||||++.++...
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 678999999999999999765
No 487
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.23 E-value=0.06 Score=54.38 Aligned_cols=139 Identities=19% Similarity=0.174 Sum_probs=69.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEeccHHHHHHhccCCCcc-CCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPGLLR-KHNYSERFQCLMGRANAIFDVLLSRASRT 343 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D~ir~~~~~~G~~~-~~~~~~~~~~~~~~~~~~~~~ll~~al~~ 343 (435)
...|+++|.+||||||+++.++...+. .+.+.+ ++. .++.+..... ...+.. +. .......+..++..+++.
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~~~rivti--Ed~-~El~l~~~~~v~l~~~~--~~-~~~~~~t~~~ll~~~LR~ 235 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPPQERLITI--EDT-LELVIPHENHVRLLYSK--NG-AGLGAVTAEHLLQASLRM 235 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCCCCCEEEE--CCC-ccccCCCCCEEEEEeec--cc-cCcCccCHHHHHHHHhcC
Confidence 356899999999999999999987664 233333 221 1222211100 000100 00 000001233466677777
Q ss_pred CCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHhhhhc--CCCCcHHHHHHHH-hccc
Q 013831 344 PRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRFKEM--GKEVPADAVNNML-ANYV 411 (435)
Q Consensus 344 g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~ee~~~R~~~R~~~~--~~~vp~~vi~~m~-~~fe 411 (435)
.-++|+=.=--..+... +++.+..-+ -++.+..+++.+..+|+..-.... +..++.+.+.++. ..+.
T Consensus 236 ~pD~IivGEiR~~ea~~-~l~a~~tGh~G~ltTiHa~s~~~a~~Rl~~l~~~~~~~~~~~~~~~~~~i~~~iD 307 (344)
T PRK13851 236 RPDRILLGEMRDDAAWA-YLSEVVSGHPGSISTIHGANPVQGFKKLFSLVKSSAQGASLEDRTLIDMLATAID 307 (344)
T ss_pred CCCeEEEEeeCcHHHHH-HHHHHHhCCCcEEECCCCCCHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhCC
Confidence 66555433212333332 344443322 345556666677788887654321 3345666555554 4443
No 488
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.20 E-value=0.075 Score=47.71 Aligned_cols=109 Identities=13% Similarity=0.166 Sum_probs=57.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEeccHHHHHHhc-cCCCccCCCChHHHHHHH-------HHHHHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTNLILEQMK-VPGLLRKHNYSERFQCLM-------GRANAIFDVL 336 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls~D~ir~~~~-~~G~~~~~~~~~~~~~~~-------~~~~~~~~~l 336 (435)
.+++.++|++||||||+++.++...+ ..+-+.+... +.+. +.-... .......+.+. ..-++..-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~---~~i~~~~q~~~-~~~~tv~~nl~~~~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG---EDLLFLPQRPY-LPLGTLREQLIYPWDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC---ceEEEECCCCc-cccccHHHHhhccCCCCCCHHHHHHHHH
Confidence 57899999999999999999987754 1222333211 1111 000000 00000001110 0000011123
Q ss_pred HHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCCcEEEEEECC
Q 013831 337 LSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFRKIAVVVFPK 379 (435)
Q Consensus 337 l~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~~~~vv~l~~ 379 (435)
+...+.....+|+|- ++++...++..++.+.+++ .+++++.-
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~-~tiiivsh 146 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG-ITVISVGH 146 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhC-CEEEEEeC
Confidence 334457788999996 6688888888777777653 55555543
No 489
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.20 E-value=0.064 Score=55.41 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.3
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.-+++.|+||+|||++|+.+++.+.
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcC
Confidence 3689999999999999999998764
No 490
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.20 E-value=0.069 Score=50.05 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
.+++.++|++||||||+.+.++...
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5789999999999999999998764
No 491
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=93.18 E-value=0.062 Score=47.79 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.3
Q ss_pred eEEEEEccCCCChhHHHHHHHhh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~ 289 (435)
.-|+++|.+||||||+.+.+...
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcC
Confidence 34889999999999999999875
No 492
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.17 E-value=0.071 Score=50.58 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
.+++.++|++||||||+++.++..+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 5789999999999999999998765
No 493
>PRK09165 replicative DNA helicase; Provisional
Probab=93.15 E-value=0.88 Score=48.36 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=20.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVK 288 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~ 288 (435)
...++++.|.||.||||||-.++.
T Consensus 216 ~g~livIaarpg~GKT~~al~ia~ 239 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIAF 239 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHHH
Confidence 358999999999999999876643
No 494
>PRK08506 replicative DNA helicase; Provisional
Probab=93.15 E-value=1 Score=47.52 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=27.1
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D 301 (435)
...++++.|-||.|||+||-.++... .++.+..+|.+
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlE 229 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLE 229 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCc
Confidence 36899999999999999998887543 22335566653
No 495
>PRK06851 hypothetical protein; Provisional
Probab=93.15 E-value=0.059 Score=54.75 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.++++|.|.||+||||+.+++...+.
T Consensus 30 ~~~~il~G~pGtGKStl~~~i~~~~~ 55 (367)
T PRK06851 30 NRIFILKGGPGTGKSTLMKKIGEEFL 55 (367)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999876653
No 496
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.15 E-value=0.67 Score=50.51 Aligned_cols=27 Identities=30% Similarity=0.252 Sum_probs=23.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
-+..+|++|+||.||||+|+.+++.+.
T Consensus 37 i~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 37 VGHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 356689999999999999999998764
No 497
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=93.14 E-value=0.075 Score=50.07 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=23.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+++.++..++
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 58999999999999999999997653
No 498
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.14 E-value=0.076 Score=49.21 Aligned_cols=27 Identities=19% Similarity=0.152 Sum_probs=23.6
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..+++.++|.+||||||+.+.++..++
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 357899999999999999999987644
No 499
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.13 E-value=0.075 Score=50.32 Aligned_cols=26 Identities=31% Similarity=0.283 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++...+
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 57899999999999999999987653
No 500
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.10 E-value=0.071 Score=49.51 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=16.9
Q ss_pred EEEEEccCCCChhHHHHHHHhhC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~ 290 (435)
+.++.|+||+||||.+..+....
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 78899999999998776665443
Done!