Query 013831
Match_columns 435
No_of_seqs 315 out of 1830
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 17:55:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013831.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013831hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3toj_A SET1/ASH2 histone methy 100.0 4.9E-37 1.7E-41 287.1 19.5 175 42-249 11-194 (213)
2 2yyo_A SPRY domain-containing 100.0 2E-35 6.8E-40 266.9 16.7 160 47-238 3-169 (171)
3 3emw_A SPRY domain-containing 99.9 1.6E-23 5.3E-28 196.0 16.3 157 41-230 41-214 (217)
4 2jk9_A SPRY domain-containing 99.9 4.2E-23 1.4E-27 192.6 16.5 157 41-230 30-205 (212)
5 2afj_A Gene rich cluster, C9 g 99.9 2.5E-21 8.5E-26 182.3 12.6 161 40-233 37-214 (226)
6 3zvl_A Bifunctional polynucleo 99.7 2.6E-16 9E-21 160.9 16.4 137 263-432 255-395 (416)
7 1ly1_A Polynucleotide kinase; 99.6 2.3E-15 7.9E-20 134.7 14.7 138 266-414 2-147 (181)
8 1ltq_A Polynucleotide kinase; 99.5 7.1E-14 2.4E-18 136.0 14.4 139 266-414 2-147 (301)
9 3a4m_A L-seryl-tRNA(SEC) kinas 99.5 2.8E-13 9.5E-18 129.7 16.5 133 265-414 3-140 (260)
10 1gvn_B Zeta; postsegregational 99.4 2.6E-12 8.9E-17 124.8 15.8 140 265-409 32-184 (287)
11 2axn_A 6-phosphofructo-2-kinas 99.4 9.1E-12 3.1E-16 130.7 18.7 142 265-408 34-189 (520)
12 2rhm_A Putative kinase; P-loop 99.3 1.5E-11 5.1E-16 111.1 12.9 120 265-392 4-127 (193)
13 1qhx_A CPT, protein (chloramph 99.3 6.5E-11 2.2E-15 105.6 15.1 119 266-390 3-133 (178)
14 3t61_A Gluconokinase; PSI-biol 99.2 1.8E-11 6.1E-16 112.0 9.9 129 266-414 18-152 (202)
15 2p5t_B PEZT; postsegregational 99.2 2.9E-11 9.8E-16 115.1 11.2 126 264-392 30-159 (253)
16 2vli_A Antibiotic resistance p 99.2 6.9E-11 2.4E-15 105.8 11.2 134 265-413 4-145 (183)
17 1knq_A Gluconate kinase; ALFA/ 99.2 2.9E-10 9.9E-15 101.3 15.2 130 265-413 7-144 (175)
18 1tev_A UMP-CMP kinase; ploop, 99.2 9.6E-10 3.3E-14 98.9 17.1 120 266-392 3-136 (196)
19 3lw7_A Adenylate kinase relate 99.2 2E-10 6.8E-15 101.3 11.6 132 267-406 2-138 (179)
20 4eun_A Thermoresistant glucoki 99.1 4E-10 1.4E-14 103.1 12.5 132 265-414 28-166 (200)
21 4gp7_A Metallophosphoesterase; 99.1 1.8E-09 6.2E-14 96.4 15.5 130 265-411 8-139 (171)
22 1qf9_A UMP/CMP kinase, protein 99.1 2.4E-09 8.1E-14 96.2 16.3 118 265-391 5-132 (194)
23 2wl1_A Pyrin, marenostrin; amy 99.0 5.1E-09 1.7E-13 95.5 15.1 147 42-222 13-174 (191)
24 2c95_A Adenylate kinase 1; tra 99.0 4.5E-09 1.5E-13 94.9 14.7 118 265-391 8-134 (196)
25 2fbe_A Predicted: similar to R 99.0 7.2E-09 2.5E-13 95.2 15.9 148 42-222 10-171 (201)
26 2vok_A 52 kDa RO protein; poly 99.0 7.4E-09 2.5E-13 94.1 15.6 145 42-222 9-170 (188)
27 2ze6_A Isopentenyl transferase 99.0 5.3E-10 1.8E-14 106.5 8.1 135 266-415 1-165 (253)
28 3dl0_A Adenylate kinase; phosp 99.0 4.6E-09 1.6E-13 96.8 14.3 116 268-390 2-127 (216)
29 2yvu_A Probable adenylyl-sulfa 99.0 5.2E-09 1.8E-13 94.2 14.1 116 265-389 12-132 (186)
30 1bif_A 6-phosphofructo-2-kinas 99.0 5.1E-09 1.7E-13 108.4 15.7 123 265-390 38-172 (469)
31 2cdn_A Adenylate kinase; phosp 99.0 1.1E-08 3.6E-13 93.3 15.8 119 265-391 19-148 (201)
32 1ukz_A Uridylate kinase; trans 99.0 2.1E-08 7E-13 91.4 17.0 121 263-392 12-143 (203)
33 3cm0_A Adenylate kinase; ATP-b 99.0 1.7E-08 6E-13 90.3 15.9 117 266-391 4-127 (186)
34 3fb4_A Adenylate kinase; psych 98.9 5.9E-09 2E-13 96.0 12.8 116 268-390 2-127 (216)
35 2bwj_A Adenylate kinase 5; pho 98.9 6.4E-09 2.2E-13 94.1 12.3 115 266-391 12-137 (199)
36 3uv9_A TRIM5alpha, tripartite 98.9 1.6E-08 5.5E-13 91.8 13.8 141 42-222 12-173 (186)
37 3tlx_A Adenylate kinase 2; str 98.9 9.3E-09 3.2E-13 97.1 12.8 120 265-391 28-157 (243)
38 2xb4_A Adenylate kinase; ATP-b 98.9 1.3E-08 4.3E-13 94.8 13.0 116 268-391 2-127 (223)
39 3umf_A Adenylate kinase; rossm 98.9 1.9E-08 6.4E-13 93.6 12.8 119 263-392 26-155 (217)
40 3kb5_A Tripartite motif-contai 98.9 5.9E-08 2E-12 88.6 15.8 146 42-221 12-178 (193)
41 1aky_A Adenylate kinase; ATP:A 98.8 1.9E-08 6.5E-13 93.0 12.1 119 266-391 4-133 (220)
42 3sr0_A Adenylate kinase; phosp 98.8 2.9E-08 1E-12 91.5 12.8 116 268-391 2-125 (206)
43 1m7g_A Adenylylsulfate kinase; 98.8 2E-08 6.9E-13 92.4 11.1 114 265-387 24-149 (211)
44 3be4_A Adenylate kinase; malar 98.8 3E-08 1E-12 91.7 12.2 118 266-391 5-133 (217)
45 3uie_A Adenylyl-sulfate kinase 98.8 2.5E-08 8.7E-13 90.9 11.2 113 265-387 24-140 (200)
46 3kb2_A SPBC2 prophage-derived 98.7 6.2E-08 2.1E-12 85.3 11.7 114 267-411 2-133 (173)
47 1x6v_B Bifunctional 3'-phospho 98.7 4.2E-08 1.4E-12 104.4 12.4 115 265-388 51-170 (630)
48 3vaa_A Shikimate kinase, SK; s 98.7 4.5E-08 1.6E-12 89.2 11.0 112 265-388 24-136 (199)
49 1m8p_A Sulfate adenylyltransfe 98.7 1.2E-07 4.2E-12 100.3 14.6 115 264-387 394-513 (573)
50 2bdt_A BH3686; alpha-beta prot 98.7 1.7E-07 5.7E-12 84.4 13.2 118 266-391 2-123 (189)
51 2pbr_A DTMP kinase, thymidylat 98.7 1.2E-07 4.2E-12 85.0 12.1 133 268-411 2-160 (195)
52 3trf_A Shikimate kinase, SK; a 98.7 9.4E-08 3.2E-12 85.5 10.9 39 266-307 5-43 (185)
53 1ak2_A Adenylate kinase isoenz 98.7 1.4E-07 4.8E-12 88.1 12.5 120 265-391 15-144 (233)
54 1zd8_A GTP:AMP phosphotransfer 98.6 1.9E-07 6.3E-12 86.8 11.1 116 265-390 6-128 (227)
55 1e6c_A Shikimate kinase; phosp 98.6 3.8E-07 1.3E-11 80.4 12.1 109 266-390 2-116 (173)
56 2qor_A Guanylate kinase; phosp 98.6 2.1E-07 7E-12 85.1 10.6 108 264-390 10-147 (204)
57 2plr_A DTMP kinase, probable t 98.6 2.9E-07 1E-11 83.7 11.6 123 266-391 4-144 (213)
58 2gks_A Bifunctional SAT/APS ki 98.6 2.4E-07 8.3E-12 97.5 12.4 114 265-388 371-488 (546)
59 2z0h_A DTMP kinase, thymidylat 98.6 2.7E-07 9.2E-12 83.1 11.0 131 268-410 2-158 (197)
60 4eaq_A DTMP kinase, thymidylat 98.6 6.5E-07 2.2E-11 83.7 13.1 142 263-411 23-192 (229)
61 1e4v_A Adenylate kinase; trans 98.5 1.8E-07 6.3E-12 86.0 7.9 113 268-391 2-124 (214)
62 2pez_A Bifunctional 3'-phospho 98.5 1.2E-06 4.2E-11 77.9 12.7 115 266-389 5-124 (179)
63 1nks_A Adenylate kinase; therm 98.5 2.7E-07 9.1E-12 82.6 7.7 39 266-304 1-41 (194)
64 1ex7_A Guanylate kinase; subst 98.5 4.2E-07 1.4E-11 82.4 8.7 127 267-407 2-148 (186)
65 2pt5_A Shikimate kinase, SK; a 98.5 2.2E-07 7.5E-12 81.6 6.6 105 268-390 2-113 (168)
66 1zp6_A Hypothetical protein AT 98.4 4.8E-06 1.7E-10 74.5 15.4 136 265-411 8-145 (191)
67 1zak_A Adenylate kinase; ATP:A 98.4 6.8E-07 2.3E-11 82.6 9.9 39 265-306 4-42 (222)
68 1y63_A LMAJ004144AAA protein; 98.4 5.4E-07 1.8E-11 81.0 8.9 108 265-390 9-121 (184)
69 2iyv_A Shikimate kinase, SK; t 98.4 3.1E-07 1.1E-11 82.1 6.9 38 267-307 3-40 (184)
70 3iij_A Coilin-interacting nucl 98.4 2.6E-07 8.8E-12 82.4 5.3 105 265-390 10-117 (180)
71 1kht_A Adenylate kinase; phosp 98.4 3.2E-07 1.1E-11 82.0 6.0 41 266-306 3-45 (192)
72 1via_A Shikimate kinase; struc 98.4 8.4E-07 2.9E-11 78.7 8.1 39 266-307 4-42 (175)
73 1nn5_A Similar to deoxythymidy 98.3 1.9E-06 6.4E-11 78.6 10.4 26 266-291 9-34 (215)
74 4edh_A DTMP kinase, thymidylat 98.3 7.6E-06 2.6E-10 75.6 13.2 140 266-410 6-173 (213)
75 3gmt_A Adenylate kinase; ssgci 98.3 6E-06 2.1E-10 77.1 12.1 111 269-391 11-132 (230)
76 1kag_A SKI, shikimate kinase I 98.3 3.3E-06 1.1E-10 74.3 9.6 39 266-307 4-42 (173)
77 4b3n_A Maltose-binding peripla 98.3 4.5E-06 1.6E-10 88.8 12.3 122 42-181 410-566 (602)
78 2wwf_A Thymidilate kinase, put 98.3 1.2E-06 4E-11 79.9 6.6 139 265-412 9-170 (212)
79 3tau_A Guanylate kinase, GMP k 98.2 1.4E-06 4.7E-11 80.0 6.5 27 265-291 7-33 (208)
80 1zuh_A Shikimate kinase; alpha 98.2 2E-06 6.9E-11 75.6 7.4 40 265-307 6-45 (168)
81 1s96_A Guanylate kinase, GMP k 98.2 6.1E-06 2.1E-10 76.6 10.5 138 264-413 14-170 (219)
82 1uf9_A TT1252 protein; P-loop, 98.2 1E-05 3.4E-10 73.0 11.8 37 265-305 7-43 (203)
83 2f6r_A COA synthase, bifunctio 98.2 1.4E-05 4.8E-10 76.9 13.3 39 264-306 73-111 (281)
84 2e63_A KIAA1787 protein; struc 98.2 5.5E-05 1.9E-09 67.2 15.6 143 50-226 12-165 (170)
85 3tr0_A Guanylate kinase, GMP k 98.2 4.3E-06 1.5E-10 75.6 8.7 26 266-291 7-32 (205)
86 3lv8_A DTMP kinase, thymidylat 98.2 1.8E-05 6.1E-10 74.3 12.6 142 266-410 27-196 (236)
87 3a00_A Guanylate kinase, GMP k 98.1 2.9E-06 1E-10 76.2 6.9 25 267-291 2-26 (186)
88 3cr8_A Sulfate adenylyltranfer 98.1 1.7E-05 5.7E-10 83.5 12.6 115 265-388 368-487 (552)
89 2jaq_A Deoxyguanosine kinase; 98.1 1.7E-05 5.7E-10 71.4 10.7 24 268-291 2-25 (205)
90 3a8t_A Adenylate isopentenyltr 98.1 1.6E-05 5.3E-10 78.4 11.1 35 266-303 40-74 (339)
91 1jjv_A Dephospho-COA kinase; P 98.1 2.3E-05 8E-10 71.1 11.1 36 267-306 3-38 (206)
92 1uj2_A Uridine-cytidine kinase 98.1 1.5E-05 5.2E-10 75.1 10.1 40 265-304 21-67 (252)
93 1vht_A Dephospho-COA kinase; s 98.1 5.1E-05 1.8E-09 69.5 13.4 37 266-306 4-40 (218)
94 2if2_A Dephospho-COA kinase; a 98.0 1.6E-05 5.6E-10 71.9 9.5 36 267-306 2-37 (204)
95 4tmk_A Protein (thymidylate ki 98.0 8.4E-05 2.9E-09 68.6 14.3 126 266-391 3-154 (213)
96 1p5z_B DCK, deoxycytidine kina 98.0 6.5E-06 2.2E-10 78.1 5.9 34 264-299 22-55 (263)
97 3v9p_A DTMP kinase, thymidylat 98.0 1.1E-05 3.6E-10 75.4 6.9 120 265-391 24-173 (227)
98 1gtv_A TMK, thymidylate kinase 97.9 2.9E-06 1E-10 77.3 2.7 123 268-392 2-155 (214)
99 2v54_A DTMP kinase, thymidylat 97.9 9.7E-05 3.3E-09 66.5 12.4 26 266-291 4-29 (204)
100 4hlc_A DTMP kinase, thymidylat 97.9 0.00025 8.7E-09 64.9 15.1 120 266-391 2-146 (205)
101 4i1u_A Dephospho-COA kinase; s 97.9 0.00013 4.4E-09 67.2 13.0 39 265-307 8-46 (210)
102 2grj_A Dephospho-COA kinase; T 97.9 3.7E-05 1.3E-09 69.8 9.1 39 265-306 11-49 (192)
103 3nwj_A ATSK2; P loop, shikimat 97.9 3.8E-05 1.3E-09 72.7 9.4 39 266-307 48-86 (250)
104 2j41_A Guanylate kinase; GMP, 97.9 1.4E-05 4.7E-10 72.3 6.0 25 266-290 6-30 (207)
105 3hjn_A DTMP kinase, thymidylat 97.8 0.0004 1.4E-08 63.1 13.6 118 268-391 2-143 (197)
106 2bbw_A Adenylate kinase 4, AK4 97.7 9.5E-05 3.3E-09 69.2 9.6 36 266-304 27-62 (246)
107 3fdi_A Uncharacterized protein 97.7 0.0002 6.8E-09 65.3 11.2 112 267-390 7-137 (201)
108 3r20_A Cytidylate kinase; stru 97.7 9.2E-05 3.2E-09 69.3 8.9 38 266-306 9-46 (233)
109 1kgd_A CASK, peripheral plasma 97.7 3.1E-05 1.1E-09 69.1 5.4 26 266-291 5-30 (180)
110 4e22_A Cytidylate kinase; P-lo 97.7 0.00042 1.4E-08 65.2 13.4 38 266-306 27-64 (252)
111 3hdt_A Putative kinase; struct 97.7 0.00023 7.8E-09 66.1 11.3 38 266-306 14-51 (223)
112 3ld9_A DTMP kinase, thymidylat 97.6 0.0002 6.7E-09 66.6 9.6 118 265-390 20-165 (223)
113 2ocp_A DGK, deoxyguanosine kin 97.6 0.00017 5.8E-09 67.2 8.4 27 266-292 2-28 (241)
114 3lnc_A Guanylate kinase, GMP k 97.5 3E-05 1E-09 71.9 2.6 27 265-291 26-53 (231)
115 2vp4_A Deoxynucleoside kinase; 97.2 0.00026 8.8E-09 65.7 5.1 26 264-289 18-43 (230)
116 1cke_A CK, MSSA, protein (cyti 97.2 0.0002 6.9E-09 65.6 4.1 36 267-305 6-41 (227)
117 3ch4_B Pmkase, phosphomevalona 97.1 0.0024 8.2E-08 58.2 10.5 115 266-386 11-143 (202)
118 2qt1_A Nicotinamide riboside k 97.1 0.00033 1.1E-08 63.5 4.6 39 263-303 18-56 (207)
119 3ney_A 55 kDa erythrocyte memb 97.1 0.00037 1.3E-08 63.4 5.0 27 265-291 18-44 (197)
120 3ake_A Cytidylate kinase; CMP 97.1 0.00028 9.4E-09 63.6 3.6 36 268-306 4-39 (208)
121 3ec2_A DNA replication protein 97.1 0.00081 2.8E-08 59.4 6.6 95 266-378 38-140 (180)
122 3crm_A TRNA delta(2)-isopenten 97.0 0.00039 1.3E-08 68.1 4.4 35 266-303 5-39 (323)
123 2yue_A Protein neuralized; str 97.0 0.0051 1.8E-07 54.3 10.9 135 50-223 14-152 (168)
124 1lvg_A Guanylate kinase, GMP k 97.0 0.0024 8.1E-08 57.7 8.7 26 266-291 4-29 (198)
125 1q3t_A Cytidylate kinase; nucl 96.9 0.0006 2.1E-08 63.3 4.4 41 263-306 13-53 (236)
126 3foz_A TRNA delta(2)-isopenten 96.9 0.00071 2.4E-08 65.8 4.5 35 265-302 9-43 (316)
127 3d3q_A TRNA delta(2)-isopenten 96.8 0.00065 2.2E-08 67.0 4.1 34 267-303 8-41 (340)
128 1jbk_A CLPB protein; beta barr 96.8 0.0057 2E-07 53.2 9.9 25 266-290 43-67 (195)
129 2h92_A Cytidylate kinase; ross 96.8 0.00076 2.6E-08 61.5 4.1 37 267-306 4-40 (219)
130 3t15_A Ribulose bisphosphate c 96.8 0.0021 7.1E-08 61.9 7.4 40 264-304 34-73 (293)
131 3bos_A Putative DNA replicatio 96.8 0.00049 1.7E-08 63.0 2.4 38 266-303 52-91 (242)
132 3exa_A TRNA delta(2)-isopenten 96.6 0.0012 4E-08 64.4 4.2 35 266-303 3-37 (322)
133 3tmk_A Thymidylate kinase; pho 96.6 0.0051 1.8E-07 56.6 8.3 27 266-292 5-31 (216)
134 2p65_A Hypothetical protein PF 96.5 0.0047 1.6E-07 53.8 6.9 25 266-290 43-67 (187)
135 1p6x_A Thymidine kinase; P-loo 96.5 0.0085 2.9E-07 58.8 9.1 27 266-292 7-33 (334)
136 1of1_A Thymidine kinase; trans 96.5 0.027 9.3E-07 56.0 12.8 30 265-294 48-77 (376)
137 1l8q_A Chromosomal replication 96.4 0.0065 2.2E-07 58.8 8.1 39 266-304 37-77 (324)
138 1rz3_A Hypothetical protein rb 96.4 0.0028 9.6E-08 57.2 4.8 39 265-303 21-61 (201)
139 1vma_A Cell division protein F 96.4 0.0039 1.3E-07 60.5 6.0 39 264-302 102-142 (306)
140 3uk6_A RUVB-like 2; hexameric 96.4 0.027 9.3E-07 55.1 12.3 26 266-291 70-95 (368)
141 3syl_A Protein CBBX; photosynt 96.3 0.0087 3E-07 57.2 8.0 25 266-290 67-91 (309)
142 1e2k_A Thymidine kinase; trans 96.2 0.014 4.7E-07 57.3 9.0 29 266-294 4-32 (331)
143 3c8u_A Fructokinase; YP_612366 96.2 0.0028 9.4E-08 57.5 3.7 27 265-291 21-47 (208)
144 2z4s_A Chromosomal replication 96.2 0.017 5.9E-07 58.7 9.9 38 266-303 130-171 (440)
145 3tqc_A Pantothenate kinase; bi 96.1 0.0041 1.4E-07 60.8 4.8 41 263-303 89-133 (321)
146 1a7j_A Phosphoribulokinase; tr 96.1 0.0018 6.2E-08 62.4 2.2 39 266-304 5-45 (290)
147 3eph_A TRNA isopentenyltransfe 96.1 0.0029 1E-07 63.6 3.5 33 267-302 3-35 (409)
148 3pfi_A Holliday junction ATP-d 96.1 0.046 1.6E-06 52.9 12.0 33 267-300 56-88 (338)
149 1c9k_A COBU, adenosylcobinamid 96.1 0.0032 1.1E-07 56.3 3.3 31 268-300 1-31 (180)
150 3eie_A Vacuolar protein sortin 96.0 0.0072 2.4E-07 58.7 5.8 37 266-303 51-87 (322)
151 4b4t_J 26S protease regulatory 95.9 0.0044 1.5E-07 62.4 4.1 35 266-301 182-216 (405)
152 3asz_A Uridine kinase; cytidin 95.9 0.0041 1.4E-07 56.1 3.4 37 265-302 5-41 (211)
153 3tvt_A Disks large 1 tumor sup 95.8 0.0057 1.9E-07 59.0 4.0 25 266-293 100-124 (292)
154 3cf0_A Transitional endoplasmi 95.8 0.0097 3.3E-07 57.2 5.5 39 266-305 49-87 (301)
155 4b4t_L 26S protease subunit RP 95.8 0.0068 2.3E-07 61.7 4.6 35 266-301 215-249 (437)
156 4b4t_K 26S protease regulatory 95.7 0.0049 1.7E-07 62.6 3.5 35 266-301 206-240 (428)
157 1sq5_A Pantothenate kinase; P- 95.7 0.0074 2.5E-07 58.4 4.6 38 264-301 78-119 (308)
158 1hqc_A RUVB; extended AAA-ATPa 95.7 0.04 1.4E-06 52.8 9.8 32 267-299 39-70 (324)
159 3h4m_A Proteasome-activating n 95.7 0.01 3.4E-07 56.1 5.4 34 266-300 51-84 (285)
160 3vfd_A Spastin; ATPase, microt 95.7 0.044 1.5E-06 54.6 10.3 34 266-300 148-181 (389)
161 4b4t_M 26S protease regulatory 95.7 0.0043 1.5E-07 63.1 2.9 36 266-302 215-250 (434)
162 2qmh_A HPR kinase/phosphorylas 95.7 0.0071 2.4E-07 55.0 4.0 33 266-302 34-66 (205)
163 2cvh_A DNA repair and recombin 95.7 0.0049 1.7E-07 55.7 2.9 36 265-301 19-54 (220)
164 1odf_A YGR205W, hypothetical 3 95.7 0.0057 2E-07 58.9 3.4 28 264-291 29-56 (290)
165 4b4t_H 26S protease regulatory 95.6 0.0051 1.8E-07 62.9 3.1 36 266-302 243-278 (467)
166 2gza_A Type IV secretion syste 95.6 0.036 1.2E-06 54.9 9.2 138 266-411 175-323 (361)
167 3cf2_A TER ATPase, transitiona 95.6 0.017 5.7E-07 63.2 7.2 37 266-303 238-274 (806)
168 1xwi_A SKD1 protein; VPS4B, AA 95.6 0.008 2.7E-07 58.6 4.2 35 266-300 45-79 (322)
169 2qp9_X Vacuolar protein sortin 95.5 0.011 3.8E-07 58.3 5.2 36 267-303 85-120 (355)
170 4a1f_A DNAB helicase, replicat 95.5 0.067 2.3E-06 52.5 10.6 35 266-300 46-82 (338)
171 2w58_A DNAI, primosome compone 95.5 0.0097 3.3E-07 53.2 4.1 41 267-307 55-97 (202)
172 4b4t_I 26S protease regulatory 95.5 0.0072 2.4E-07 61.2 3.5 36 266-302 216-251 (437)
173 1ixz_A ATP-dependent metallopr 95.5 0.012 4.2E-07 54.7 4.9 33 269-302 52-84 (254)
174 1znw_A Guanylate kinase, GMP k 95.5 0.0079 2.7E-07 54.4 3.5 27 265-291 19-45 (207)
175 1xjc_A MOBB protein homolog; s 95.5 0.0063 2.2E-07 53.8 2.7 26 265-290 3-28 (169)
176 3pxg_A Negative regulator of g 95.5 0.02 6.9E-07 58.7 6.9 23 268-290 203-225 (468)
177 1g8f_A Sulfate adenylyltransfe 95.4 0.0075 2.6E-07 62.6 3.6 27 265-291 394-420 (511)
178 2qby_B CDC6 homolog 3, cell di 95.4 0.038 1.3E-06 54.2 8.6 25 266-290 45-69 (384)
179 1z6g_A Guanylate kinase; struc 95.4 0.0072 2.5E-07 55.3 2.9 27 265-291 22-48 (218)
180 3aez_A Pantothenate kinase; tr 95.3 0.01 3.4E-07 57.8 3.8 38 264-301 88-129 (312)
181 1lv7_A FTSH; alpha/beta domain 95.3 0.011 3.7E-07 55.2 3.9 33 267-300 46-78 (257)
182 4a74_A DNA repair and recombin 95.3 0.009 3.1E-07 54.2 3.2 25 265-289 24-48 (231)
183 2ehv_A Hypothetical protein PH 95.2 0.0082 2.8E-07 55.3 2.8 23 265-287 29-51 (251)
184 1nij_A Hypothetical protein YJ 95.2 0.014 4.9E-07 56.6 4.7 35 265-299 3-37 (318)
185 2x8a_A Nuclear valosin-contain 95.2 0.0092 3.2E-07 56.8 3.2 30 269-299 47-76 (274)
186 1iy2_A ATP-dependent metallopr 95.2 0.016 5.6E-07 54.7 4.9 34 269-303 76-109 (278)
187 2jeo_A Uridine-cytidine kinase 95.2 0.011 3.7E-07 55.0 3.6 27 265-291 24-50 (245)
188 3pvs_A Replication-associated 95.2 0.039 1.3E-06 56.3 7.9 32 267-299 51-82 (447)
189 2qz4_A Paraplegin; AAA+, SPG7, 95.1 0.013 4.5E-07 54.4 4.0 34 266-300 39-72 (262)
190 1ye8_A Protein THEP1, hypothet 95.1 0.01 3.6E-07 52.7 3.1 49 341-390 97-152 (178)
191 3b9p_A CG5977-PA, isoform A; A 95.1 0.014 4.7E-07 55.6 4.1 34 266-300 54-87 (297)
192 2kjq_A DNAA-related protein; s 95.1 0.011 3.8E-07 50.9 3.1 25 266-290 36-60 (149)
193 3d8b_A Fidgetin-like protein 1 95.0 0.022 7.7E-07 56.1 5.5 35 266-301 117-151 (357)
194 1rj9_A FTSY, signal recognitio 95.0 0.012 4.2E-07 56.9 3.4 37 265-301 101-139 (304)
195 3e70_C DPA, signal recognition 95.0 0.014 4.8E-07 57.1 3.8 38 264-301 127-166 (328)
196 2zan_A Vacuolar protein sortin 95.0 0.015 5.1E-07 59.3 4.1 38 266-303 167-204 (444)
197 3n70_A Transport activator; si 95.0 0.013 4.4E-07 49.9 3.1 22 269-290 27-48 (145)
198 2w0m_A SSO2452; RECA, SSPF, un 94.9 0.013 4.6E-07 53.0 3.2 35 266-300 23-59 (235)
199 1np6_A Molybdopterin-guanine d 94.9 0.014 4.9E-07 51.7 3.2 26 265-290 5-30 (174)
200 3b9q_A Chloroplast SRP recepto 94.9 0.017 5.7E-07 55.9 3.9 38 264-301 98-137 (302)
201 3co5_A Putative two-component 94.9 0.0075 2.6E-07 51.3 1.3 29 269-299 30-58 (143)
202 1htw_A HI0065; nucleotide-bind 94.9 0.018 6.3E-07 50.1 3.8 28 265-292 32-59 (158)
203 3kl4_A SRP54, signal recogniti 94.8 0.016 5.3E-07 59.0 3.8 37 265-301 96-134 (433)
204 3dm5_A SRP54, signal recogniti 94.8 0.014 4.8E-07 59.5 3.2 38 265-302 99-138 (443)
205 3czq_A Putative polyphosphate 94.8 0.069 2.4E-06 51.5 7.9 107 265-391 85-212 (304)
206 1dek_A Deoxynucleoside monopho 94.7 0.031 1.1E-06 52.3 5.1 36 267-305 2-38 (241)
207 2r6a_A DNAB helicase, replicat 94.7 0.2 6.8E-06 51.0 11.7 36 265-300 202-240 (454)
208 1n0w_A DNA repair protein RAD5 94.7 0.014 4.7E-07 53.5 2.7 25 265-289 23-47 (243)
209 2px0_A Flagellar biosynthesis 94.6 0.019 6.5E-07 55.3 3.6 38 265-302 104-144 (296)
210 3hws_A ATP-dependent CLP prote 94.6 0.027 9.2E-07 55.5 4.7 33 267-300 52-84 (363)
211 1cr0_A DNA primase/helicase; R 94.6 0.017 5.8E-07 55.1 3.2 25 265-289 34-58 (296)
212 1ofh_A ATP-dependent HSL prote 94.6 0.02 6.9E-07 54.4 3.7 33 267-300 51-83 (310)
213 1in4_A RUVB, holliday junction 94.6 0.014 4.7E-07 57.1 2.5 26 266-291 51-76 (334)
214 2q6t_A DNAB replication FORK h 94.6 0.2 6.9E-06 50.8 11.4 35 266-300 200-237 (444)
215 1njg_A DNA polymerase III subu 94.6 0.018 6.1E-07 51.8 3.2 25 266-290 45-69 (250)
216 2dr3_A UPF0273 protein PH0284; 94.6 0.018 6.2E-07 52.7 3.2 36 266-301 23-60 (247)
217 2og2_A Putative signal recogni 94.5 0.022 7.4E-07 56.5 3.9 38 264-301 155-194 (359)
218 1osn_A Thymidine kinase, VZV-T 94.5 0.023 8E-07 55.8 3.9 28 266-293 12-40 (341)
219 1d2n_A N-ethylmaleimide-sensit 94.5 0.034 1.2E-06 52.2 4.9 33 265-298 63-95 (272)
220 1g41_A Heat shock protein HSLU 94.5 0.025 8.7E-07 57.6 4.3 33 267-300 51-83 (444)
221 3m6a_A ATP-dependent protease 94.4 0.024 8.1E-07 59.4 3.9 34 266-300 108-141 (543)
222 2r2a_A Uncharacterized protein 94.3 0.025 8.5E-07 51.3 3.4 24 266-289 5-28 (199)
223 3hu3_A Transitional endoplasmi 94.3 0.071 2.4E-06 55.0 7.2 38 266-304 238-275 (489)
224 2chg_A Replication factor C sm 94.2 0.022 7.5E-07 50.7 2.9 22 269-290 41-62 (226)
225 2i3b_A HCR-ntpase, human cance 94.2 0.019 6.3E-07 51.6 2.4 24 267-290 2-25 (189)
226 2eyu_A Twitching motility prot 94.2 0.027 9.1E-07 53.2 3.6 26 265-290 24-49 (261)
227 1tue_A Replication protein E1; 94.2 0.017 5.9E-07 52.7 2.1 27 266-292 58-84 (212)
228 1svm_A Large T antigen; AAA+ f 94.2 0.024 8.1E-07 56.6 3.3 28 265-292 168-195 (377)
229 2j37_W Signal recognition part 94.2 0.025 8.6E-07 58.6 3.5 38 264-301 99-138 (504)
230 1zu4_A FTSY; GTPase, signal re 94.1 0.028 9.5E-07 54.8 3.6 38 264-301 103-142 (320)
231 2bjv_A PSP operon transcriptio 94.1 0.037 1.3E-06 51.7 4.3 33 267-299 30-64 (265)
232 2f1r_A Molybdopterin-guanine d 94.1 0.013 4.5E-07 51.8 1.0 25 266-290 2-26 (171)
233 3tif_A Uncharacterized ABC tra 94.1 0.026 8.9E-07 52.4 3.1 26 266-291 31-56 (235)
234 1um8_A ATP-dependent CLP prote 94.0 0.036 1.2E-06 54.8 4.3 32 267-299 73-104 (376)
235 2v9p_A Replication protein E1; 94.0 0.026 9E-07 54.6 3.1 27 265-291 125-151 (305)
236 1nlf_A Regulatory protein REPA 94.0 0.024 8.1E-07 53.7 2.8 24 265-288 29-52 (279)
237 2yhs_A FTSY, cell division pro 94.0 0.029 1E-06 57.8 3.6 27 264-290 291-317 (503)
238 3j16_B RLI1P; ribosome recycli 93.9 0.2 6.9E-06 53.0 10.1 52 339-390 235-290 (608)
239 3tqf_A HPR(Ser) kinase; transf 93.9 0.031 1E-06 49.6 3.1 32 266-301 16-47 (181)
240 2orw_A Thymidine kinase; TMTK, 93.9 0.031 1.1E-06 49.8 3.2 24 266-289 3-26 (184)
241 2xxa_A Signal recognition part 93.8 0.034 1.2E-06 56.5 3.7 38 264-301 98-138 (433)
242 3p32_A Probable GTPase RV1496/ 93.8 0.039 1.3E-06 54.4 3.9 37 265-301 78-116 (355)
243 3pxi_A Negative regulator of g 93.8 0.083 2.8E-06 57.4 6.9 22 269-290 204-225 (758)
244 3cf2_A TER ATPase, transitiona 93.8 0.084 2.9E-06 57.7 6.8 39 266-305 511-549 (806)
245 2r62_A Cell division protease 93.7 0.016 5.5E-07 54.2 1.0 23 269-291 47-69 (268)
246 1qvr_A CLPB protein; coiled co 93.7 0.16 5.4E-06 56.0 9.1 23 268-290 193-215 (854)
247 1g8p_A Magnesium-chelatase 38 93.7 0.026 8.9E-07 54.7 2.5 23 269-291 48-70 (350)
248 2ga8_A Hypothetical 39.9 kDa p 93.7 0.036 1.2E-06 54.8 3.4 25 266-290 24-48 (359)
249 2pcj_A ABC transporter, lipopr 93.7 0.032 1.1E-06 51.4 2.9 26 266-291 30-55 (224)
250 2qgz_A Helicase loader, putati 93.7 0.043 1.5E-06 53.1 4.0 42 266-307 152-196 (308)
251 4fcw_A Chaperone protein CLPB; 93.7 0.035 1.2E-06 52.8 3.4 34 267-300 48-83 (311)
252 2cbz_A Multidrug resistance-as 93.7 0.031 1.1E-06 51.9 2.9 25 266-290 31-55 (237)
253 2onk_A Molybdate/tungstate ABC 93.6 0.037 1.3E-06 51.6 3.3 25 267-291 25-49 (240)
254 2ghi_A Transport protein; mult 93.6 0.049 1.7E-06 51.3 4.1 33 266-298 46-78 (260)
255 2wsm_A Hydrogenase expression/ 93.6 0.042 1.4E-06 49.5 3.5 26 265-290 29-54 (221)
256 3b85_A Phosphate starvation-in 93.5 0.035 1.2E-06 50.6 2.9 24 266-289 22-45 (208)
257 2zts_A Putative uncharacterize 93.5 0.036 1.2E-06 50.7 3.0 24 265-288 29-52 (251)
258 1mv5_A LMRA, multidrug resista 93.5 0.042 1.4E-06 51.2 3.4 27 265-291 27-53 (243)
259 1b0u_A Histidine permease; ABC 93.4 0.04 1.4E-06 52.0 3.1 27 265-291 31-57 (262)
260 1yrb_A ATP(GTP)binding protein 93.3 0.056 1.9E-06 50.1 4.1 38 264-301 12-50 (262)
261 1j8m_F SRP54, signal recogniti 93.3 0.042 1.4E-06 52.9 3.2 36 266-301 98-135 (297)
262 2ce7_A Cell division protein F 93.3 0.044 1.5E-06 56.4 3.6 34 267-301 50-83 (476)
263 2olj_A Amino acid ABC transpor 93.3 0.042 1.4E-06 52.0 3.1 50 341-390 175-228 (263)
264 1oix_A RAS-related protein RAB 93.3 0.042 1.4E-06 48.6 2.9 24 267-290 30-53 (191)
265 1z2a_A RAS-related protein RAB 93.2 0.042 1.4E-06 46.6 2.8 22 268-289 7-28 (168)
266 1sxj_A Activator 1 95 kDa subu 93.2 0.058 2E-06 55.9 4.4 33 266-299 77-109 (516)
267 2dhr_A FTSH; AAA+ protein, hex 93.2 0.056 1.9E-06 55.9 4.2 31 269-300 67-97 (499)
268 3gfo_A Cobalt import ATP-bindi 93.2 0.04 1.4E-06 52.5 2.8 26 266-291 34-59 (275)
269 2dyk_A GTP-binding protein; GT 93.2 0.043 1.5E-06 46.3 2.8 22 269-290 4-25 (161)
270 4g1u_C Hemin import ATP-bindin 93.2 0.04 1.4E-06 52.2 2.8 48 343-390 165-217 (266)
271 1v5w_A DMC1, meiotic recombina 93.2 0.072 2.5E-06 52.2 4.8 25 265-289 121-145 (343)
272 2ce2_X GTPase HRAS; signaling 93.2 0.043 1.5E-06 46.1 2.8 21 269-289 6-26 (166)
273 2c9o_A RUVB-like 1; hexameric 93.2 0.036 1.2E-06 56.5 2.6 25 267-291 64-88 (456)
274 2pze_A Cystic fibrosis transme 93.2 0.044 1.5E-06 50.6 3.0 26 266-291 34-59 (229)
275 2ixe_A Antigen peptide transpo 93.1 0.045 1.5E-06 51.9 3.1 41 340-380 171-216 (271)
276 2ff7_A Alpha-hemolysin translo 93.1 0.044 1.5E-06 51.2 3.0 26 266-291 35-60 (247)
277 2v1u_A Cell division control p 93.1 0.039 1.3E-06 53.9 2.7 26 265-290 43-68 (387)
278 2v3c_C SRP54, signal recogniti 93.1 0.039 1.3E-06 56.1 2.7 38 264-301 97-136 (432)
279 1ji0_A ABC transporter; ATP bi 93.0 0.046 1.6E-06 50.8 3.0 26 266-291 32-57 (240)
280 1g6h_A High-affinity branched- 93.0 0.046 1.6E-06 51.4 3.0 26 266-291 33-58 (257)
281 1kao_A RAP2A; GTP-binding prot 93.0 0.048 1.6E-06 46.0 2.8 21 269-289 6-26 (167)
282 2ewv_A Twitching motility prot 93.0 0.054 1.8E-06 53.8 3.6 26 265-290 135-160 (372)
283 2zu0_C Probable ATP-dependent 93.0 0.051 1.7E-06 51.4 3.2 24 266-289 46-69 (267)
284 2r44_A Uncharacterized protein 93.0 0.033 1.1E-06 53.9 1.9 25 268-292 48-72 (331)
285 2qm8_A GTPase/ATPase; G protei 93.0 0.054 1.8E-06 53.1 3.4 26 264-289 53-78 (337)
286 1sgw_A Putative ABC transporte 93.0 0.041 1.4E-06 50.4 2.4 34 266-299 35-69 (214)
287 2d2e_A SUFC protein; ABC-ATPas 93.0 0.05 1.7E-06 50.9 3.1 24 266-289 29-52 (250)
288 1vpl_A ABC transporter, ATP-bi 93.0 0.05 1.7E-06 51.2 3.1 26 266-291 41-66 (256)
289 1u8z_A RAS-related protein RAL 92.9 0.05 1.7E-06 45.9 2.8 21 269-289 7-27 (168)
290 1sxj_C Activator 1 40 kDa subu 92.9 0.046 1.6E-06 53.2 2.9 22 269-290 49-70 (340)
291 2qby_A CDC6 homolog 1, cell di 92.9 0.044 1.5E-06 53.5 2.7 26 265-290 44-69 (386)
292 2f9l_A RAB11B, member RAS onco 92.9 0.05 1.7E-06 48.2 2.9 22 268-289 7-28 (199)
293 2hf9_A Probable hydrogenase ni 92.9 0.064 2.2E-06 48.5 3.6 25 266-290 38-62 (226)
294 1ek0_A Protein (GTP-binding pr 92.8 0.053 1.8E-06 46.0 2.8 21 269-289 6-26 (170)
295 1sxj_D Activator 1 41 kDa subu 92.8 0.05 1.7E-06 52.7 2.9 22 269-290 61-82 (353)
296 1z0j_A RAB-22, RAS-related pro 92.8 0.053 1.8E-06 46.0 2.8 23 268-290 8-30 (170)
297 2yz2_A Putative ABC transporte 92.8 0.054 1.8E-06 51.2 3.1 26 266-291 33-58 (266)
298 1pzn_A RAD51, DNA repair and r 92.8 0.052 1.8E-06 53.5 3.1 26 265-290 130-155 (349)
299 2www_A Methylmalonic aciduria 92.8 0.062 2.1E-06 52.9 3.6 25 265-289 73-97 (349)
300 2z43_A DNA repair and recombin 92.8 0.069 2.3E-06 51.8 3.9 37 265-301 106-150 (324)
301 1ky3_A GTP-binding protein YPT 92.8 0.054 1.9E-06 46.5 2.8 24 267-290 9-32 (182)
302 4f4c_A Multidrug resistance pr 92.7 0.16 5.4E-06 58.7 7.4 110 266-377 444-578 (1321)
303 1wms_A RAB-9, RAB9, RAS-relate 92.7 0.056 1.9E-06 46.4 2.8 23 268-290 9-31 (177)
304 1g16_A RAS-related protein SEC 92.7 0.055 1.9E-06 45.9 2.8 21 269-289 6-26 (170)
305 2ihy_A ABC transporter, ATP-bi 92.7 0.055 1.9E-06 51.6 3.0 26 266-291 47-72 (279)
306 2erx_A GTP-binding protein DI- 92.7 0.056 1.9E-06 45.9 2.8 21 269-289 6-26 (172)
307 1ls1_A Signal recognition part 92.7 0.059 2E-06 51.7 3.2 37 265-301 97-135 (295)
308 2qi9_C Vitamin B12 import ATP- 92.7 0.056 1.9E-06 50.6 3.0 26 266-291 26-51 (249)
309 2vhj_A Ntpase P4, P4; non- hyd 92.7 0.063 2.1E-06 52.4 3.4 24 266-289 123-146 (331)
310 2nzj_A GTP-binding protein REM 92.7 0.056 1.9E-06 46.2 2.8 22 268-289 6-27 (175)
311 2wji_A Ferrous iron transport 92.6 0.057 1.9E-06 46.3 2.8 23 267-289 4-26 (165)
312 1z08_A RAS-related protein RAB 92.6 0.057 1.9E-06 45.9 2.8 22 268-289 8-29 (170)
313 1c1y_A RAS-related protein RAP 92.6 0.058 2E-06 45.7 2.8 21 269-289 6-26 (167)
314 1fnn_A CDC6P, cell division co 92.6 0.058 2E-06 52.8 3.1 25 267-291 45-69 (389)
315 2hxs_A RAB-26, RAS-related pro 92.6 0.063 2.2E-06 46.1 3.0 22 268-289 8-29 (178)
316 1lw7_A Transcriptional regulat 92.6 0.057 1.9E-06 53.3 3.0 26 266-291 170-195 (365)
317 3q85_A GTP-binding protein REM 92.5 0.06 2.1E-06 45.8 2.8 20 269-288 5-24 (169)
318 1ypw_A Transitional endoplasmi 92.5 0.085 2.9E-06 57.8 4.6 35 266-301 238-272 (806)
319 2nq2_C Hypothetical ABC transp 92.5 0.06 2.1E-06 50.5 3.0 51 339-390 142-198 (253)
320 3q72_A GTP-binding protein RAD 92.5 0.057 2E-06 45.8 2.6 21 269-289 5-25 (166)
321 3hr8_A Protein RECA; alpha and 92.5 0.067 2.3E-06 52.9 3.4 37 265-301 60-98 (356)
322 2ged_A SR-beta, signal recogni 92.5 0.061 2.1E-06 47.1 2.8 24 267-290 49-72 (193)
323 3bh0_A DNAB-like replicative h 92.5 0.067 2.3E-06 51.8 3.4 36 265-300 67-104 (315)
324 2pjz_A Hypothetical protein ST 92.5 0.08 2.7E-06 50.0 3.8 38 340-378 143-182 (263)
325 1r2q_A RAS-related protein RAB 92.5 0.063 2.2E-06 45.5 2.8 22 268-289 8-29 (170)
326 2zej_A Dardarin, leucine-rich 92.5 0.054 1.9E-06 47.4 2.4 21 269-289 5-25 (184)
327 1kjw_A Postsynaptic density pr 92.4 0.5 1.7E-05 45.3 9.4 25 265-292 104-128 (295)
328 1z0f_A RAB14, member RAS oncog 92.4 0.065 2.2E-06 45.9 2.8 24 267-290 16-39 (179)
329 2fn4_A P23, RAS-related protei 92.4 0.065 2.2E-06 46.0 2.8 23 267-289 10-32 (181)
330 2p67_A LAO/AO transport system 92.4 0.087 3E-06 51.6 4.0 26 264-289 54-79 (341)
331 3con_A GTPase NRAS; structural 92.3 0.065 2.2E-06 46.8 2.8 22 268-289 23-44 (190)
332 1pui_A ENGB, probable GTP-bind 92.3 0.044 1.5E-06 48.8 1.7 25 266-290 26-50 (210)
333 3kta_A Chromosome segregation 92.3 0.07 2.4E-06 46.6 3.0 23 268-290 28-50 (182)
334 3bc1_A RAS-related protein RAB 92.3 0.068 2.3E-06 46.4 2.8 22 268-289 13-34 (195)
335 1xx6_A Thymidine kinase; NESG, 92.2 0.14 4.9E-06 45.9 5.0 34 265-298 7-42 (191)
336 1nrj_B SR-beta, signal recogni 92.2 0.07 2.4E-06 47.8 3.0 24 267-290 13-36 (218)
337 3sop_A Neuronal-specific septi 92.2 0.063 2.2E-06 50.9 2.7 23 268-290 4-26 (270)
338 3jvv_A Twitching mobility prot 92.2 0.079 2.7E-06 52.3 3.5 25 266-290 123-147 (356)
339 1sxj_E Activator 1 40 kDa subu 92.2 0.055 1.9E-06 52.6 2.4 21 269-289 39-59 (354)
340 2gj8_A MNME, tRNA modification 92.2 0.078 2.7E-06 45.9 3.2 23 267-289 5-27 (172)
341 2pt7_A CAG-ALFA; ATPase, prote 92.2 0.054 1.8E-06 52.9 2.3 33 266-298 171-204 (330)
342 2lkc_A Translation initiation 92.2 0.084 2.9E-06 45.3 3.3 24 266-289 8-31 (178)
343 2zr9_A Protein RECA, recombina 92.2 0.064 2.2E-06 52.8 2.8 37 265-301 60-98 (349)
344 2efe_B Small GTP-binding prote 92.2 0.07 2.4E-06 45.9 2.8 22 268-289 14-35 (181)
345 3iev_A GTP-binding protein ERA 92.2 0.076 2.6E-06 51.2 3.3 28 262-289 6-33 (308)
346 1svi_A GTP-binding protein YSX 92.2 0.067 2.3E-06 46.8 2.7 23 267-289 24-46 (195)
347 2a5j_A RAS-related protein RAB 92.1 0.12 4E-06 45.3 4.3 23 268-290 23-45 (191)
348 1upt_A ARL1, ADP-ribosylation 92.1 0.073 2.5E-06 45.2 2.8 23 267-289 8-30 (171)
349 3clv_A RAB5 protein, putative; 92.1 0.072 2.5E-06 46.5 2.8 22 268-289 9-30 (208)
350 4dsu_A GTPase KRAS, isoform 2B 92.1 0.073 2.5E-06 46.1 2.8 21 269-289 7-27 (189)
351 2wjg_A FEOB, ferrous iron tran 92.1 0.072 2.5E-06 46.3 2.8 24 266-289 7-30 (188)
352 2a9k_A RAS-related protein RAL 92.0 0.075 2.6E-06 45.8 2.8 22 268-289 20-41 (187)
353 3czp_A Putative polyphosphate 92.0 0.26 8.9E-06 50.8 7.3 108 264-392 41-170 (500)
354 2ffh_A Protein (FFH); SRP54, s 92.0 0.077 2.6E-06 53.7 3.2 37 265-301 97-135 (425)
355 1q57_A DNA primase/helicase; d 92.0 0.26 8.7E-06 50.8 7.3 38 264-301 240-280 (503)
356 3lda_A DNA repair protein RAD5 92.0 0.067 2.3E-06 53.7 2.8 23 265-287 177-199 (400)
357 1r6b_X CLPA protein; AAA+, N-t 92.0 0.32 1.1E-05 52.6 8.4 24 267-290 208-231 (758)
358 1r8s_A ADP-ribosylation factor 92.0 0.081 2.8E-06 44.7 2.9 21 269-289 3-23 (164)
359 3nh6_A ATP-binding cassette SU 92.0 0.051 1.8E-06 52.6 1.8 26 266-291 80-105 (306)
360 1m7b_A RND3/RHOE small GTP-bin 92.0 0.075 2.6E-06 46.3 2.8 22 268-289 9-30 (184)
361 1p9r_A General secretion pathw 92.0 0.081 2.8E-06 53.5 3.3 26 266-291 167-192 (418)
362 2g6b_A RAS-related protein RAB 92.0 0.078 2.7E-06 45.6 2.8 23 268-290 12-34 (180)
363 2bme_A RAB4A, RAS-related prot 92.0 0.077 2.6E-06 46.0 2.8 22 268-289 12-33 (186)
364 1iqp_A RFCS; clamp loader, ext 91.9 0.075 2.6E-06 50.7 2.9 22 269-290 49-70 (327)
365 2cxx_A Probable GTP-binding pr 91.9 0.077 2.6E-06 46.0 2.8 21 269-289 4-24 (190)
366 2oil_A CATX-8, RAS-related pro 91.9 0.079 2.7E-06 46.4 2.8 22 268-289 27-48 (193)
367 2y8e_A RAB-protein 6, GH09086P 91.9 0.08 2.7E-06 45.3 2.8 22 268-289 16-37 (179)
368 3tw8_B RAS-related protein RAB 91.8 0.076 2.6E-06 45.6 2.6 22 268-289 11-32 (181)
369 2h17_A ADP-ribosylation factor 91.8 0.091 3.1E-06 45.6 3.1 23 267-289 22-44 (181)
370 3u61_B DNA polymerase accessor 91.8 0.09 3.1E-06 50.5 3.4 33 266-299 48-80 (324)
371 3pqc_A Probable GTP-binding pr 91.8 0.079 2.7E-06 46.1 2.7 23 268-290 25-47 (195)
372 2bbs_A Cystic fibrosis transme 91.8 0.084 2.9E-06 50.6 3.1 27 265-291 63-89 (290)
373 3fvq_A Fe(3+) IONS import ATP- 91.8 0.086 2.9E-06 52.2 3.2 49 341-390 154-208 (359)
374 3kkq_A RAS-related protein M-R 91.8 0.085 2.9E-06 45.6 2.8 22 268-289 20-41 (183)
375 1mh1_A RAC1; GTP-binding, GTPa 91.8 0.085 2.9E-06 45.5 2.8 22 268-289 7-28 (186)
376 2chq_A Replication factor C sm 91.7 0.083 2.8E-06 50.1 2.9 22 269-290 41-62 (319)
377 2i1q_A DNA repair and recombin 91.7 0.091 3.1E-06 50.7 3.2 25 265-289 97-121 (322)
378 3t1o_A Gliding protein MGLA; G 91.7 0.099 3.4E-06 45.5 3.2 23 269-291 17-39 (198)
379 1jr3_A DNA polymerase III subu 91.7 0.089 3E-06 51.3 3.2 26 266-291 38-63 (373)
380 1u0j_A DNA replication protein 91.6 0.095 3.2E-06 49.7 3.2 25 267-291 105-129 (267)
381 3tsz_A Tight junction protein 91.6 0.12 4.2E-06 51.6 4.2 65 265-352 231-297 (391)
382 2bov_A RAla, RAS-related prote 91.6 0.087 3E-06 46.4 2.8 22 268-289 16-37 (206)
383 2b8t_A Thymidine kinase; deoxy 91.6 0.11 3.7E-06 47.9 3.5 33 266-298 12-46 (223)
384 1zd9_A ADP-ribosylation factor 91.6 0.11 3.7E-06 45.5 3.4 23 267-289 23-45 (188)
385 3nbx_X ATPase RAVA; AAA+ ATPas 91.6 0.072 2.5E-06 55.1 2.5 24 268-291 43-66 (500)
386 3t5g_A GTP-binding protein RHE 91.6 0.089 3E-06 45.4 2.7 23 267-289 7-29 (181)
387 3tui_C Methionine import ATP-b 91.6 0.1 3.4E-06 51.8 3.4 49 341-390 179-233 (366)
388 3shw_A Tight junction protein 91.5 0.15 5E-06 52.2 4.7 66 264-352 222-289 (468)
389 3ihw_A Centg3; RAS, centaurin, 91.5 0.092 3.1E-06 46.0 2.8 23 268-290 22-44 (184)
390 1x3s_A RAS-related protein RAB 91.5 0.094 3.2E-06 45.7 2.8 22 268-289 17-38 (195)
391 2gf9_A RAS-related protein RAB 91.4 0.095 3.2E-06 45.8 2.8 22 268-289 24-45 (189)
392 3te6_A Regulatory protein SIR3 91.4 0.061 2.1E-06 52.3 1.7 26 265-290 44-69 (318)
393 1u94_A RECA protein, recombina 91.4 0.089 3.1E-06 52.0 2.9 36 265-300 62-99 (356)
394 1zbd_A Rabphilin-3A; G protein 91.4 0.092 3.1E-06 46.4 2.7 23 268-290 10-32 (203)
395 3tkl_A RAS-related protein RAB 91.4 0.098 3.3E-06 45.7 2.8 23 268-290 18-40 (196)
396 3rlf_A Maltose/maltodextrin im 91.3 0.1 3.4E-06 52.1 3.2 49 341-390 149-203 (381)
397 3dz8_A RAS-related protein RAB 91.3 0.1 3.5E-06 45.7 2.9 22 269-290 26-47 (191)
398 4bas_A ADP-ribosylation factor 91.3 0.11 3.8E-06 45.5 3.2 24 266-289 17-40 (199)
399 1z06_A RAS-related protein RAB 91.3 0.1 3.4E-06 45.6 2.8 22 268-289 22-43 (189)
400 1vg8_A RAS-related protein RAB 91.3 0.099 3.4E-06 46.2 2.8 24 267-290 9-32 (207)
401 1m2o_B GTP-binding protein SAR 91.3 0.099 3.4E-06 46.0 2.8 22 268-289 25-46 (190)
402 2fg5_A RAB-22B, RAS-related pr 91.3 0.098 3.4E-06 45.9 2.8 23 268-290 25-47 (192)
403 2yyz_A Sugar ABC transporter, 91.3 0.1 3.6E-06 51.6 3.2 50 340-390 148-203 (359)
404 2qen_A Walker-type ATPase; unk 91.2 0.15 5.1E-06 48.9 4.3 31 267-300 32-62 (350)
405 1zj6_A ADP-ribosylation factor 91.2 0.1 3.5E-06 45.5 2.8 23 267-289 17-39 (187)
406 2gf0_A GTP-binding protein DI- 91.2 0.1 3.5E-06 45.7 2.9 22 268-289 10-31 (199)
407 2atv_A RERG, RAS-like estrogen 91.2 0.1 3.5E-06 45.9 2.8 22 268-289 30-51 (196)
408 3oes_A GTPase rhebl1; small GT 91.2 0.1 3.4E-06 46.2 2.8 23 268-290 26-48 (201)
409 1moz_A ARL1, ADP-ribosylation 91.2 0.077 2.6E-06 45.8 1.9 23 266-288 18-40 (183)
410 3bwd_D RAC-like GTP-binding pr 91.2 0.1 3.6E-06 44.8 2.8 22 269-290 11-32 (182)
411 1ksh_A ARF-like protein 2; sma 91.2 0.089 3E-06 45.7 2.4 24 267-290 19-42 (186)
412 1ojl_A Transcriptional regulat 91.1 0.11 3.8E-06 49.9 3.2 32 268-299 27-60 (304)
413 2it1_A 362AA long hypothetical 91.1 0.11 3.8E-06 51.4 3.2 49 341-390 149-203 (362)
414 2iwr_A Centaurin gamma 1; ANK 91.0 0.084 2.9E-06 45.4 2.0 21 269-289 10-30 (178)
415 1fzq_A ADP-ribosylation factor 91.0 0.1 3.5E-06 45.5 2.6 23 267-289 17-39 (181)
416 3c5c_A RAS-like protein 12; GD 91.0 0.14 4.7E-06 44.9 3.4 22 268-289 23-44 (187)
417 1tf7_A KAIC; homohexamer, hexa 91.0 0.1 3.5E-06 54.2 2.9 22 265-286 38-59 (525)
418 1sxj_B Activator 1 37 kDa subu 91.0 0.11 3.7E-06 49.4 2.9 22 269-290 45-66 (323)
419 2p5s_A RAS and EF-hand domain 90.9 0.11 3.8E-06 45.9 2.8 24 267-290 29-52 (199)
420 1z47_A CYSA, putative ABC-tran 90.9 0.11 3.9E-06 51.2 3.1 49 341-390 161-215 (355)
421 2ew1_A RAS-related protein RAB 90.9 0.11 3.9E-06 46.4 2.8 22 268-289 28-49 (201)
422 3reg_A RHO-like small GTPase; 90.9 0.12 4E-06 45.4 2.8 22 268-289 25-46 (194)
423 2yv5_A YJEQ protein; hydrolase 90.9 0.12 4.1E-06 49.7 3.1 25 266-291 165-189 (302)
424 2bcg_Y Protein YP2, GTP-bindin 90.8 0.11 3.9E-06 45.9 2.8 22 268-289 10-31 (206)
425 2rcn_A Probable GTPase ENGC; Y 90.8 0.11 3.7E-06 51.4 2.8 26 266-291 215-240 (358)
426 1gwn_A RHO-related GTP-binding 90.8 0.12 4E-06 46.4 2.8 22 268-289 30-51 (205)
427 1v43_A Sugar-binding transport 90.8 0.12 4.2E-06 51.3 3.2 50 340-390 156-211 (372)
428 1f6b_A SAR1; gtpases, N-termin 90.8 0.1 3.6E-06 46.2 2.5 21 268-288 27-47 (198)
429 2oap_1 GSPE-2, type II secreti 90.8 0.11 3.7E-06 53.9 2.9 33 266-298 260-293 (511)
430 3rhf_A Putative polyphosphate 90.7 1.2 4E-05 42.5 9.7 108 265-392 74-202 (289)
431 3cbq_A GTP-binding protein REM 90.7 0.095 3.3E-06 46.5 2.1 21 267-287 24-44 (195)
432 3k1j_A LON protease, ATP-depen 90.7 0.12 4.1E-06 54.6 3.2 25 267-291 61-85 (604)
433 2o52_A RAS-related protein RAB 90.7 0.11 3.9E-06 46.0 2.6 22 268-289 27-48 (200)
434 2hup_A RAS-related protein RAB 90.7 0.12 4.2E-06 45.8 2.8 22 268-289 31-52 (201)
435 3czp_A Putative polyphosphate 90.6 0.69 2.4E-05 47.7 8.7 108 264-392 298-427 (500)
436 2qag_B Septin-6, protein NEDD5 90.6 0.12 4.2E-06 52.2 3.0 24 266-289 40-65 (427)
437 3lxx_A GTPase IMAP family memb 90.6 0.12 4.1E-06 47.4 2.7 24 267-290 30-53 (239)
438 3cph_A RAS-related protein SEC 90.5 0.13 4.3E-06 45.7 2.8 23 267-289 21-43 (213)
439 2fu5_C RAS-related protein RAB 90.5 0.084 2.9E-06 45.7 1.5 22 268-289 10-31 (183)
440 3gd7_A Fusion complex of cysti 90.5 0.13 4.6E-06 51.4 3.2 41 340-380 170-213 (390)
441 2q3h_A RAS homolog gene family 90.5 0.13 4.4E-06 45.3 2.8 22 268-289 22-43 (201)
442 1g29_1 MALK, maltose transport 90.4 0.13 4.5E-06 51.1 3.1 50 340-390 154-209 (372)
443 2fv8_A H6, RHO-related GTP-bin 90.4 0.13 4.5E-06 45.8 2.8 22 268-289 27-48 (207)
444 2fh5_B SR-beta, signal recogni 90.4 0.13 4.6E-06 45.8 2.8 23 267-289 8-30 (214)
445 2f7s_A C25KG, RAS-related prot 90.4 0.13 4.5E-06 45.9 2.8 22 268-289 27-48 (217)
446 4gzl_A RAS-related C3 botulinu 90.4 0.13 4.6E-06 45.7 2.8 23 267-289 31-53 (204)
447 1u0l_A Probable GTPase ENGC; p 90.3 0.12 4.2E-06 49.5 2.7 26 266-291 169-194 (301)
448 2h57_A ADP-ribosylation factor 90.3 0.11 3.9E-06 45.3 2.2 24 267-290 22-45 (190)
449 2il1_A RAB12; G-protein, GDP, 90.3 0.13 4.5E-06 45.1 2.6 21 269-289 29-49 (192)
450 3d31_A Sulfate/molybdate ABC t 90.2 0.1 3.4E-06 51.5 1.9 49 341-390 143-197 (348)
451 3ozx_A RNAse L inhibitor; ATP 90.1 0.18 6.1E-06 52.7 3.9 52 339-390 152-206 (538)
452 1zcb_A G alpha I/13; GTP-bindi 90.1 0.13 4.4E-06 51.0 2.6 22 267-288 34-55 (362)
453 2b6h_A ADP-ribosylation factor 90.1 0.14 4.7E-06 45.2 2.6 22 268-289 31-52 (192)
454 2atx_A Small GTP binding prote 90.1 0.15 5E-06 44.6 2.8 22 268-289 20-41 (194)
455 1f2t_A RAD50 ABC-ATPase; DNA d 90.0 0.19 6.5E-06 43.0 3.3 23 266-288 23-45 (149)
456 2gco_A H9, RHO-related GTP-bin 90.0 0.15 5.1E-06 45.1 2.8 22 268-289 27-48 (201)
457 3lxw_A GTPase IMAP family memb 90.0 0.14 4.9E-06 47.5 2.7 24 267-290 22-45 (247)
458 2j0v_A RAC-like GTP-binding pr 90.0 0.15 5.2E-06 45.3 2.8 22 268-289 11-32 (212)
459 2j1l_A RHO-related GTP-binding 89.9 0.15 5.1E-06 45.8 2.8 22 268-289 36-57 (214)
460 2cjw_A GTP-binding protein GEM 89.9 0.15 5.3E-06 44.9 2.8 22 268-289 8-29 (192)
461 2npi_A Protein CLP1; CLP1-PCF1 89.9 0.13 4.5E-06 52.5 2.6 26 265-290 137-162 (460)
462 2qu8_A Putative nucleolar GTP- 89.8 0.14 4.8E-06 46.5 2.5 24 266-289 29-52 (228)
463 1w5s_A Origin recognition comp 89.8 0.15 5E-06 50.4 2.8 25 266-290 50-76 (412)
464 1oxx_K GLCV, glucose, ABC tran 89.5 0.097 3.3E-06 51.7 1.2 50 340-390 155-210 (353)
465 2fna_A Conserved hypothetical 89.5 0.18 6.3E-06 48.3 3.2 32 267-299 31-62 (357)
466 1xp8_A RECA protein, recombina 89.5 0.16 5.6E-06 50.3 2.8 36 266-301 74-111 (366)
467 3k53_A Ferrous iron transport 89.4 0.17 6E-06 47.4 2.9 22 268-289 5-26 (271)
468 3q3j_B RHO-related GTP-binding 89.4 0.18 6.1E-06 45.3 2.8 21 269-289 30-50 (214)
469 1ega_A Protein (GTP-binding pr 89.3 0.19 6.5E-06 48.2 3.1 25 265-289 7-31 (301)
470 3bgw_A DNAB-like replicative h 89.3 0.2 6.7E-06 51.0 3.3 37 265-301 196-234 (444)
471 3llu_A RAS-related GTP-binding 89.2 0.19 6.4E-06 44.3 2.8 21 269-289 23-43 (196)
472 1knx_A Probable HPR(Ser) kinas 89.2 0.18 6.3E-06 48.8 2.9 32 266-301 147-178 (312)
473 2xtp_A GTPase IMAP family memb 89.2 0.18 6.1E-06 46.8 2.7 24 266-289 22-45 (260)
474 3vkw_A Replicase large subunit 89.1 0.37 1.3E-05 49.0 5.1 26 264-289 159-184 (446)
475 2x77_A ADP-ribosylation factor 89.0 0.15 5.1E-06 44.4 1.9 21 268-288 24-44 (189)
476 1a5t_A Delta prime, HOLB; zinc 89.0 0.2 6.7E-06 48.7 3.0 26 266-291 24-49 (334)
477 2qnr_A Septin-2, protein NEDD5 89.0 0.18 6.1E-06 48.4 2.6 21 269-289 21-41 (301)
478 1z6t_A APAF-1, apoptotic prote 88.9 0.2 6.9E-06 52.3 3.2 24 265-288 146-169 (591)
479 3cpj_B GTP-binding protein YPT 88.9 0.2 6.8E-06 45.2 2.8 22 268-289 15-36 (223)
480 1ni3_A YCHF GTPase, YCHF GTP-b 88.9 0.27 9.3E-06 49.2 4.0 25 264-288 18-42 (392)
481 1tf7_A KAIC; homohexamer, hexa 88.8 0.19 6.5E-06 52.1 2.9 25 265-289 280-304 (525)
482 4f4c_A Multidrug resistance pr 88.7 0.16 5.4E-06 58.8 2.4 110 266-377 1105-1241(1321)
483 3b60_A Lipid A export ATP-bind 88.7 0.21 7.2E-06 52.5 3.1 26 266-291 369-394 (582)
484 3f9v_A Minichromosome maintena 88.7 0.12 4.1E-06 54.7 1.2 24 268-291 329-352 (595)
485 1tq4_A IIGP1, interferon-induc 88.5 0.24 8.3E-06 49.9 3.3 24 266-289 69-92 (413)
486 1yqt_A RNAse L inhibitor; ATP- 88.5 0.23 8E-06 51.7 3.3 52 339-390 172-227 (538)
487 3b5x_A Lipid A export ATP-bind 88.4 0.22 7.6E-06 52.3 3.1 26 266-291 369-394 (582)
488 3qf4_B Uncharacterized ABC tra 88.3 0.23 7.9E-06 52.4 3.1 27 265-291 380-406 (598)
489 2yc2_C IFT27, small RAB-relate 88.3 0.11 3.8E-06 45.7 0.6 22 268-289 22-43 (208)
490 1r6b_X CLPA protein; AAA+, N-t 88.3 0.26 8.8E-06 53.4 3.6 33 268-301 490-522 (758)
491 1t9h_A YLOQ, probable GTPase E 88.3 0.093 3.2E-06 50.8 0.1 25 266-290 173-197 (307)
492 2g3y_A GTP-binding protein GEM 88.2 0.24 8.1E-06 44.9 2.8 21 268-288 39-59 (211)
493 2yl4_A ATP-binding cassette SU 88.2 0.23 7.9E-06 52.3 3.1 26 266-291 370-395 (595)
494 2xkx_A Disks large homolog 4; 88.2 1.4 4.7E-05 47.5 9.3 25 265-292 530-554 (721)
495 3t5d_A Septin-7; GTP-binding p 88.2 0.22 7.4E-06 46.9 2.6 20 269-288 11-30 (274)
496 1wf3_A GTP-binding protein; GT 88.2 0.28 9.6E-06 47.1 3.4 24 266-289 7-30 (301)
497 1ko7_A HPR kinase/phosphatase; 88.0 0.27 9.2E-06 47.6 3.1 24 266-289 144-167 (314)
498 2hjg_A GTP-binding protein ENG 87.9 1 3.4E-05 45.4 7.5 22 268-289 5-26 (436)
499 2a5y_B CED-4; apoptosis; HET: 87.9 0.31 1E-05 50.8 3.7 24 265-288 151-174 (549)
500 3ozx_A RNAse L inhibitor; ATP 87.9 0.25 8.4E-06 51.6 3.0 52 339-390 399-455 (538)
No 1
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens}
Probab=100.00 E-value=4.9e-37 Score=287.12 Aligned_cols=175 Identities=25% Similarity=0.303 Sum_probs=152.5
Q ss_pred CeEEeCcCCCCCCeEEcCCCceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEec
Q 013831 42 QRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSR 121 (435)
Q Consensus 42 ~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s~ 121 (435)
..|+||+.|++++|.||+|+++++. .++|++||||+++.+|+|||||+|.... ..++++|||++
T Consensus 11 ~~v~ld~~d~~~~l~ls~d~l~v~~------~~~~~~vra~~~v~~G~~YfEV~v~~~~----------~~~~~~iG~a~ 74 (213)
T 3toj_A 11 ERVLLALHDRAPQLKISDDRLTVVG------EKGYSMVRASHGVRKGAWYFEITVDEMP----------PDTAARLGWSQ 74 (213)
T ss_dssp CCCCEEEEEECTTSEECTTSSEEEC------CSSCEEEEESCCBSSEEEEEEEEEEECC----------TTCEEEEEEEC
T ss_pred CeEEechhhCCCCEEEcCCCcEEEe------CCceeEEEeCCCccCCeEEEEEEEeecC----------CCceEEEEecc
Confidence 5699999999999999999999986 3689999999999999999999998742 35899999999
Q ss_pred CCCC-CCCCCCCCcceEEe-cCCceEeCCCcccCCCCCCCCCEEEEEEecCCC-----CceeEEEEeCccceeecccccC
Q 013831 122 GDDP-VGKLGETEQSFGFG-GTGKFSHGGNFLNFGEKFGVGDTIICAIDLESK-----PLATIGFAKNGKWLGTAKQFDA 194 (435)
Q Consensus 122 ~~~~-~~~lG~d~~S~gy~-~~G~~~~~~~~~~yg~~f~~gDvIGc~ld~~~~-----p~~~i~ft~NG~~lg~af~~~~ 194 (435)
...+ ..++|+|.+||||+ .+|+++|++....||++|++||||||+||++.. +.++|+||+||+.||.||+.
T Consensus 75 ~~~~~~~~~G~d~~S~gy~~~~G~~~h~~~~~~yg~~~~~GDvIGc~ld~~~~~~~~~~~g~i~Ft~NG~~lg~aF~~-- 152 (213)
T 3toj_A 75 PLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTISGRGSSEIIFYKNGVNQGVAYKD-- 152 (213)
T ss_dssp TTSCTTSCTTSSTTEEEEETTTTCEEETTEEECCSCCCCTTCEEEEEEEECCC-----CCCEEEEEETTEEEEEEEES--
T ss_pred CCcccccCCCCCCCcEEEECCCCeEEeCCcCcccCCCCCCCCEEEEEEEcCCCccccCCccEEEEEeCCeeeeeeEEc--
Confidence 8654 56899999999997 589999998888999999999999999999862 22589999999999999972
Q ss_pred CCCCccccccccccccCCCceeeEEEEc-CeEEEEEccCCCCCCCcc-ccchhhhhc
Q 013831 195 GSNGLGVVDSAVKERQCESAVFPHILLK-NVVVVMQFSVEQGLIPVE-GYKSWVSAL 249 (435)
Q Consensus 195 ~~~~l~~~~~~~~g~~~~~~lfP~v~l~-~~~v~~nFG~~~~~~p~~-g~~p~~~~~ 249 (435)
. ..+.|||+|++. ++++++|||+.+.|+|++ +|+|+.+..
T Consensus 153 -~--------------~~~~lyPavsl~~~~~v~~NFG~~F~~~p~~~~~~~~~~~~ 194 (213)
T 3toj_A 153 -I--------------FEGVYFPAISLYKSCTVSINFGPCFKYPPKDLTYRPMSDMG 194 (213)
T ss_dssp -C--------------CSSCBEEEEEEESSCEEEEECSSSCSSCCSSCCCEEGGGGG
T ss_pred -C--------------CCCcEEEEEEcCCCCEEEEECCCCCccCCCCCceEcHHHhc
Confidence 1 146899999996 999999999976777766 799997654
No 2
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=266.92 Aligned_cols=160 Identities=21% Similarity=0.209 Sum_probs=132.2
Q ss_pred CcCCCCCCeEEcCCCceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCCC-
Q 013831 47 NPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDP- 125 (435)
Q Consensus 47 ~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s~~~~~- 125 (435)
|+.|++.+|.|+.|.|++++. ...|++||||+++..|+|||||+|.+.. ..++++|||++...+
T Consensus 3 s~~dr~~~l~~~~d~l~~~~~-----~~~~~~vra~~p~~~g~~YfEv~i~~~~----------~~~~~~IG~a~~~~~~ 67 (171)
T 2yyo_A 3 SGSSGFKHILVDGDTLSYHGN-----SGEVGCYVASRPLTKDSNYFEVSIVDSG----------VRGTIAVGLVPQYYSL 67 (171)
T ss_dssp ---CEEESEEEETTEEEECCC-----SSCCEEEECSSCCCSSSCEEEEEEEEET----------TTCCCEEEEECTTCCT
T ss_pred CcccCcceEEEcCCEEEEeCC-----CCceeEEEECCCCCCCCEEEEEEEEECC----------CCcEEEEEecCCCCCC
Confidence 568999999999999888763 2589999999999999999999999863 358999999997754
Q ss_pred CCCCCCCCcceEEec-CCceEeCC-CcccCCCCCCCCCEEEEEEecCC--CCceeEEEEeCccceeecccccCCCCCccc
Q 013831 126 VGKLGETEQSFGFGG-TGKFSHGG-NFLNFGEKFGVGDTIICAIDLES--KPLATIGFAKNGKWLGTAKQFDAGSNGLGV 201 (435)
Q Consensus 126 ~~~lG~d~~S~gy~~-~G~~~~~~-~~~~yg~~f~~gDvIGc~ld~~~--~p~~~i~ft~NG~~lg~af~~~~~~~~l~~ 201 (435)
..++|+|.+||||++ +|+++|+. ....||++|++||||||+||+++ .+.++|+|||||+.||+||.. .
T Consensus 68 ~~~~G~d~~S~gy~~~dG~~~~~~~~~~~yg~~f~~GDvIGc~id~~~~~~~~~~i~Ft~NG~~lg~af~~---~----- 139 (171)
T 2yyo_A 68 DHQPGWLPDSVAYHADDGKLYNGRAKGRQFGSKCNSGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGSTIMP---M----- 139 (171)
T ss_dssp TSCTTSSTTCEEEETTTCCEESSSSCCBCCSCCCCTTCEEEEEECGGGGSSSCEEEEEEETTEEEEEEEES---S-----
T ss_pred ccCCCccCCEEEEEcCCCeEEeCCCCCCcCCCCCCCCCEEEEEEEeccCCCCcEEEEEEECCEEcCceecC---C-----
Confidence 568999999999998 69998874 56899999999999999999972 112799999999999999962 1
Q ss_pred cccccccccCCCceeeEEEEc--CeEEEEEccCCCCCCC
Q 013831 202 VDSAVKERQCESAVFPHILLK--NVVVVMQFSVEQGLIP 238 (435)
Q Consensus 202 ~~~~~~g~~~~~~lfP~v~l~--~~~v~~nFG~~~~~~p 238 (435)
....|||+|++. +++|++|||+.+.+||
T Consensus 140 ---------~~~~lyPaV~l~~~g~~v~vNFG~~~~~pp 169 (171)
T 2yyo_A 140 ---------SPDGLFPAVGMHSLGEEVRLHLNAELSGPS 169 (171)
T ss_dssp ---------CSSSCEEEEEECSTTEEEEEETTCCC----
T ss_pred ---------cCCCEEEEEEEecCCCEEEEECCCCCcCCC
Confidence 146899999998 7999999999766654
No 3
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A
Probab=99.90 E-value=1.6e-23 Score=196.00 Aligned_cols=157 Identities=24% Similarity=0.422 Sum_probs=130.3
Q ss_pred CCeEEeCcCCCCCCeEEcCCCceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEe
Q 013831 41 KQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTS 120 (435)
Q Consensus 41 ~~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s 120 (435)
+..++|||.++.++|.||+|+++++.... ...|.+||++.++.+|+|||||+|.... ....++|||+
T Consensus 41 ~~~~tlDp~ta~~~L~lSed~~~v~~~~~---~~~~~~Vl~~~~~~sGrhYWEV~v~~~~----------~g~~~~vGv~ 107 (217)
T 3emw_A 41 QRRHGWNPKDCSENIEVKEGGLYFERRPV---AQSTDGARGKRGYSRGLHAWEISWPLEQ----------RGTHAVVGVA 107 (217)
T ss_dssp HHHTSEEEEEECTTEEEEGGGTEEEECCB---SSCEEEEEESCCBSSSEEEEEEECCGGG----------CTTCCEEEEE
T ss_pred ccceEeCcccCCCCEEECCCCeEEEECcc---CCCCCEEEeCCCccCccEEEEEEEcccC----------CCCceeEEEE
Confidence 46799999999999999999999876422 2458899999999999999999998531 1257999999
Q ss_pred cCCCC------CCCCCCCCcceEEe-cCCceEeCCCc---ccCC-----CCCCCCCEEEEEEecCCCCceeEEEEeCccc
Q 013831 121 RGDDP------VGKLGETEQSFGFG-GTGKFSHGGNF---LNFG-----EKFGVGDTIICAIDLESKPLATIGFAKNGKW 185 (435)
Q Consensus 121 ~~~~~------~~~lG~d~~S~gy~-~~G~~~~~~~~---~~yg-----~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~ 185 (435)
+.... ...+|++..||+|+ .+|.++|++.. ..|+ +.|..+|+|||+||++. ++|+|++||+.
T Consensus 108 ~~~~~r~~~g~~~~lG~~~~SW~l~~~~g~~~h~~~~~~~~~~~~~~~~~~~~~~d~IGV~LD~~~---G~LsFy~ng~~ 184 (217)
T 3emw_A 108 TALAPLQTDHYAALLGSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEE---GTLGYAIGGTY 184 (217)
T ss_dssp CTTSCCEESSSCCCTTSSTTEEEEETTTCBEESSCCSSCCCBSSSSSTTCCCCCCSEEEEEEETTT---TEEEEEETTEE
T ss_pred cCccccccCCccccccCCCCEEEEEeCCCcEEeCCcccCCccccccccccCCCCCCEEEEEEEcCC---CEEEEEECCeE
Confidence 87643 45799999999997 57888887653 3675 56899999999999998 89999999999
Q ss_pred eeecccccCCCCCccccccccccccCCCceeeEEEEc--CeEEEEEc
Q 013831 186 LGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK--NVVVVMQF 230 (435)
Q Consensus 186 lg~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~--~~~v~~nF 230 (435)
+|+||+. . ...+|||+|++. +++|.++|
T Consensus 185 lg~aF~~---~--------------~~~~LyP~~sl~~g~~~v~l~~ 214 (217)
T 3emw_A 185 LGPAFRG---L--------------KGRTLYPAVSAVWGQCQVRIRY 214 (217)
T ss_dssp EEEEECC---C--------------TTCCBEEEEEECSTTCEEEEEE
T ss_pred eEEEEEC---C--------------CCCEEEEEEEeccCCcEEEEEe
Confidence 9999972 1 256899999996 78998876
No 4
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A
Probab=99.90 E-value=4.2e-23 Score=192.60 Aligned_cols=157 Identities=20% Similarity=0.317 Sum_probs=128.5
Q ss_pred CCeEEeCcCCCCCCeEEcCCC-ceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEE
Q 013831 41 KQRVVLNPADCDLDFDIEDNG-LKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGT 119 (435)
Q Consensus 41 ~~~v~l~~~d~~~~l~is~d~-l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~ 119 (435)
+..++||+.+++++|.||+|+ ++++.... ...|.+||++.++.+|+|||||+|.... ..+.++|||
T Consensus 30 ~~~~tldp~ta~~~L~lsed~~~~~~~~~~---~~~~~~Vlg~~~f~sGrhYWEV~v~~~~----------~~~~w~vGV 96 (212)
T 2jk9_A 30 QLLHSWNNNDRSLNVFVKEDDKLIFHRHPV---AQSTDAIRGKVGYTRGLHVWQITWAMRQ----------RGTHAVVGV 96 (212)
T ss_dssp HHHTSEEEEEECTTEEEETTEEEEEEECCB---TTEEEEEEESCCBCSSEEEEEEECCGGG----------CTTCCEEEE
T ss_pred ccccccChhhcCCceEEeCCCeEEEEECCC---CCccceEEcCCCccCCeEEEEEEEeccc----------CCCcEEEEE
Confidence 567999999999999999997 46653221 3579999999999999999999997521 246789999
Q ss_pred ecCCCC------CCCCCCCCcceEEec-CCceEeCCCcc---c------CCCCCCCCCEEEEEEecCCCCceeEEEEeCc
Q 013831 120 SRGDDP------VGKLGETEQSFGFGG-TGKFSHGGNFL---N------FGEKFGVGDTIICAIDLESKPLATIGFAKNG 183 (435)
Q Consensus 120 s~~~~~------~~~lG~d~~S~gy~~-~G~~~~~~~~~---~------yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG 183 (435)
++.... ...+|.+..||+|+. +|+++|++... . |++.|.++|+|||+||++. ++|+|++||
T Consensus 97 ~~~~~~r~~~g~~~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~IGv~LD~e~---G~lsFy~ng 173 (212)
T 2jk9_A 97 ATADAPLHSVGYTTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDD---GTLSFIVDG 173 (212)
T ss_dssp ECTTSCCEEESSCCCTTSSTTEEEEETTTTEEEESTTTSCCEESSTTSCTTCCCCCCSEEEEEEETTT---TEEEEEETT
T ss_pred EcCCccccccCcccccccCCCcEeeECCCCcEEECCcccCccccCcccccCCcCCCCCEEEEEEECCC---CEEEEEECC
Confidence 997643 246799999999985 78888876542 2 5778899999999999998 899999999
Q ss_pred cceeecccccCCCCCccccccccccccCCCceeeEEEEc--CeEEEEEc
Q 013831 184 KWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK--NVVVVMQF 230 (435)
Q Consensus 184 ~~lg~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~--~~~v~~nF 230 (435)
+.++.||+. . ...+|||++++. +++|.+||
T Consensus 174 ~~l~~aF~~---~--------------~~~~l~P~f~l~~g~~~v~l~~ 205 (212)
T 2jk9_A 174 QYMGVAFRG---L--------------KGKKLYPVVSAVWGHCEIRMRY 205 (212)
T ss_dssp EEEEEEECC---C--------------TTCCBEEEEEECCTTCEEEEEE
T ss_pred EEeEEEecc---C--------------CCCEEeeEEEEEcCCcEEEEEE
Confidence 999999962 1 245999999995 78999987
No 5
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22
Probab=99.85 E-value=2.5e-21 Score=182.34 Aligned_cols=161 Identities=24% Similarity=0.405 Sum_probs=128.4
Q ss_pred CCCeEEeCcCCCCCCeEEcCCCceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEE
Q 013831 40 QKQRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGT 119 (435)
Q Consensus 40 ~~~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~ 119 (435)
.+..++||+.+++++|.||+|+++++.... ...+.+||++.++.+|+|||||+|.... ..+.+.|||
T Consensus 37 ~~~~~tLDp~ta~~~L~lSed~~~v~~~~~---~~~~~~Vlg~~~f~sGrhYWEV~V~~~~----------~~~~w~vGV 103 (226)
T 2afj_A 37 AQRHHGWNPKDCSENIDVKEGGLCFERRPV---AQSTDGVRGKRGYSRGLHAWEISWPLEQ----------RGTHAVVGV 103 (226)
T ss_dssp HHHHHSSCCSSSCCSSEEETTTTEEECSSC---TTTSSSEEECCCCCCSEEEEEEECCCCS----------SSCCCEEEE
T ss_pred cccccEEccccCCCCEEEeCCCEEEEECCC---CCCcCeEEECCCccCCEEEEEEEEeccC----------CCCCEEEEe
Confidence 356789999999999999999998874321 2356799999999999999999997521 136799999
Q ss_pred ecCCCC------CCCCCCCCcceEEe-cCCceEeCCCc---ccC-----CCCCCCCCEEEEEEecCCCCceeEEEEeCcc
Q 013831 120 SRGDDP------VGKLGETEQSFGFG-GTGKFSHGGNF---LNF-----GEKFGVGDTIICAIDLESKPLATIGFAKNGK 184 (435)
Q Consensus 120 s~~~~~------~~~lG~d~~S~gy~-~~G~~~~~~~~---~~y-----g~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~ 184 (435)
++.... ...+|.+..||+|+ .+|.++|++.. ..| +..|.++|+|||+||++. ++|+|++||+
T Consensus 104 ~~~s~~~~r~~~~~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~rIGV~LD~e~---G~lSFy~ng~ 180 (226)
T 2afj_A 104 ATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEE---GTLGYSIGGT 180 (226)
T ss_dssp EESSCCCSSCSSSCCCCCSCEEEEEEGGGTSTTSSSSCCSCSSSSCCSGGGGSCCSSCEEEEEETTT---TEEEEESTTC
T ss_pred cCCccccccccccccccCCCCcEEEEcCCCeEEECccccCcccccccccCCcCCCCCEEEEEEECCC---CEEEEEECCe
Confidence 986542 34689999999998 47777777653 235 446899999999999998 8999999999
Q ss_pred ceeecccccCCCCCccccccccccccCCCceeeEEEEc--CeEEEEEccCC
Q 013831 185 WLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK--NVVVVMQFSVE 233 (435)
Q Consensus 185 ~lg~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~--~~~v~~nFG~~ 233 (435)
.++.+|+.. ...+|||++++. +++|.++|-..
T Consensus 181 ~l~~aF~~~-----------------~~~~L~P~f~l~~g~~~v~l~~~~g 214 (226)
T 2afj_A 181 YLGPAFRGL-----------------KGRTLYPSVSAVWGQCQVRIRYMGE 214 (226)
T ss_dssp SCSTTHHHH-----------------HHHCCEEEEEECCTTSCCEEEEESC
T ss_pred EeEEEEEcC-----------------CCCEEEEEEEcccCCCEEEEEEcCC
Confidence 999999621 135899999995 67888887554
No 6
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.69 E-value=2.6e-16 Score=160.93 Aligned_cols=137 Identities=18% Similarity=0.176 Sum_probs=110.0
Q ss_pred CCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (435)
Q Consensus 263 ~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~ 342 (435)
...+.+|+|+|+|||||||+|+.|++.++ +.+|+.|.+. .|..+.+ .+..++.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~---~~~i~~D~~~----------------~~~~~~~--------~~~~~l~ 307 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAG---YVHVNRDTLG----------------SWQRCVS--------SCQAALR 307 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGT---CEECCGGGSC----------------SHHHHHH--------HHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcC---cEEEccchHH----------------HHHHHHH--------HHHHHHh
Confidence 44579999999999999999999999886 7888887631 1122222 3344567
Q ss_pred CCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcC--CCCcHHHHHHHHhcccCCCCCCC
Q 013831 343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMG--KEVPADAVNNMLANYVLPVNKDT 418 (435)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~--~~vp~~vi~~m~~~fe~P~~~~~ 418 (435)
.|.+||||+||.....|..+++.++.++ .+.+|+|+++ +++++|+..|..... ..++++++.+|.+.|+.|..
T Consensus 308 ~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~P~~--- 384 (416)
T 3zvl_A 308 QGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTL--- 384 (416)
T ss_dssp TTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCCCG---
T ss_pred cCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhcCCCCc---
Confidence 8999999999999999998888777665 7788999887 899999999975332 36899999999999999976
Q ss_pred CCCCcccceecccc
Q 013831 419 PGSDELFDQRRGSA 432 (435)
Q Consensus 419 ~~~~e~Fd~i~~~~ 432 (435)
.|+||.|+.+-
T Consensus 385 ---~E~fd~v~~v~ 395 (416)
T 3zvl_A 385 ---AEGFLEILEIP 395 (416)
T ss_dssp ---GGTCSEEEEEC
T ss_pred ---ccCCcEEEEEe
Confidence 89999988653
No 7
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.64 E-value=2.3e-15 Score=134.69 Aligned_cols=138 Identities=20% Similarity=0.306 Sum_probs=100.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHh-hCCCccEEEeccHHHHHHhccCCCccC--CCChHHHHHHHHHHHHHHHHHHHHHh-
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVK-DHPEKRYILLGTNLILEQMKVPGLLRK--HNYSERFQCLMGRANAIFDVLLSRAS- 341 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~-~~~~~~~~~ls~D~ir~~~~~~G~~~~--~~~~~~~~~~~~~~~~~~~~ll~~al- 341 (435)
+.+|+|+|+|||||||+|+.|++ .++ +.+|+.|.++..+. +.... ..+....+... ...+..++..++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~---~~~i~~d~~r~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~ 73 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG---FYNINRDDYRQSIM--AHEERDEYKYTKKKEGIV---TGMQFDTAKSILY 73 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT---EEEECHHHHHHHHT--TSCCGGGCCCCHHHHHHH---HHHHHHHHHHHHT
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC---cEEecHHHHHHHhh--CCCccchhhhchhhhhHH---HHHHHHHHHHHHh
Confidence 46899999999999999999998 454 78999999887653 21000 12322212111 222334566666
Q ss_pred --cCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCC
Q 013831 342 --RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPV 414 (435)
Q Consensus 342 --~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~ 414 (435)
..|.+||+|.++.+..+|..+.+.+..++ .+.+|++.++ +++++|+..|. .+.++++++.++++.|+.|.
T Consensus 74 ~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~---~~~~~~~~i~~~~~~~~~~~ 147 (181)
T 1ly1_A 74 GGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG---TKAVPIDVLRSMYKSMREYL 147 (181)
T ss_dssp SCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCG---GGCCCHHHHHHHHHHHHHHH
T ss_pred hccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccc---cCCCCHHHHHHHHHHhhccC
Confidence 78999999999999988887665555544 5667888887 89999999984 24689999999999998764
No 8
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.53 E-value=7.1e-14 Score=136.00 Aligned_cols=139 Identities=20% Similarity=0.316 Sum_probs=100.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhcc--CCCccCCCChHHHHHHHHHHHHHHHHHHHHHh--
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV--PGLLRKHNYSERFQCLMGRANAIFDVLLSRAS-- 341 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~--~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al-- 341 (435)
+.+|+|+|+|||||||+|+.|++.+.+ +.+|+.|.+|..+.. .|. . ..+....+... ...+..++..++
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~--~~~i~~D~~r~~~~~~~~g~-~-~~~~~~~~~~~---~~~~~~~~~~~l~~ 74 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDYRQSIMAHEERD-E-YKYTKKKEGIV---TGMQFDTAKSILYG 74 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHHHHHHTTSCCCC-----CCHHHHHHH---HHHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCC--cEEecccHHHHHhccCCccc-c-cccchhhhhHH---HHHHHHHHHHHHhh
Confidence 468999999999999999999987532 889999988876431 110 0 01222112111 122334566667
Q ss_pred -cCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCC
Q 013831 342 -RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPV 414 (435)
Q Consensus 342 -~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~ 414 (435)
..|..||+|.++.....|..+.+.+..++ .+.+|+++++ +++++|+.+|. .+.+++++++++++.|+.|.
T Consensus 75 ~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~---~~~~~~e~i~~~~~~~~~~~ 147 (301)
T 1ltq_A 75 GDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG---TKAVPIDVLRSMYKSMREYL 147 (301)
T ss_dssp CTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCG---GGCCCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhcc---CCCCCHHHHHHHHHHHhccc
Confidence 78999999999999988887655555554 5678899887 89999999984 36789999999999887553
No 9
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.51 E-value=2.8e-13 Score=129.68 Aligned_cols=133 Identities=24% Similarity=0.488 Sum_probs=95.6
Q ss_pred cceEEEEEccCCCChhHHHHHHHhh---CCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKD---HPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRAS 341 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~---~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al 341 (435)
.+.+|+|+|+|||||||+|+.+++. .+ ..+++++.|.++..+ .+ |....+..... .....+..++
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g-~~~i~~~~D~~~~~l--~~------~~~~~e~~~~~---~~~~~i~~~l 70 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNN-IDVIVLGSDLIRESF--PV------WKEKYEEFIKK---STYRLIDSAL 70 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEECTHHHHTTS--SS------CCGGGHHHHHH---HHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCC-CEEEEECchHHHHHH--hh------hhHHHHHHHHH---HHHHHHHHHh
Confidence 3679999999999999999999986 33 224446889887643 22 21111111111 1123444555
Q ss_pred cCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCC
Q 013831 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPV 414 (435)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~ 414 (435)
+. ..||+|.++.+...|..+.+.+...+ ...+|+|+++ +++++|+.+| ++.++++.++++.+.|+.|.
T Consensus 71 ~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R----~~~~~~~~l~~~~~~~e~~~ 140 (260)
T 3a4m_A 71 KN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIER----GEKIPNEVIKKMYEKFDEPG 140 (260)
T ss_dssp TT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHT----TCSSCHHHHHHHHHHCCCTT
T ss_pred hC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhC----CCCCCHHHHHHHHHHhcCcc
Confidence 66 89999999999998887666655555 5678889886 8999999998 45678999999999998775
No 10
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.42 E-value=2.6e-12 Score=124.85 Aligned_cols=140 Identities=16% Similarity=0.226 Sum_probs=91.5
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc---cCC-CChHHHHHHHHHHHHHHHHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL---RKH-NYSERFQCLMGRANAIFDVLLSRA 340 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~---~~~-~~~~~~~~~~~~~~~~~~~ll~~a 340 (435)
.+.+|+|+|+|||||||+|+.|++.++. .+++||.|.+|..+ .+.. ... .+.... ...........+++.+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~-~~~~Is~D~~R~~~--~~~~~~~~~~~~~a~~~--~~~~~~~~~~~~v~~~ 106 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQG-NVIVIDNDTFKQQH--PNFDELVKLYEKDVVKH--VTPYSNRMTEAIISRL 106 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTT-CCEEECTHHHHTTS--TTHHHHHHHHGGGCHHH--HHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEechHhHHhc--hhhHHHHHHccchhhhh--hhHHHHHHHHHHHHHH
Confidence 4689999999999999999999998752 37889999887542 1110 000 000000 0011112233455666
Q ss_pred hcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHH----HHHHHHhhhhc---CCCCcHHHHHHHHhc
Q 013831 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDL----KIRSVKRFKEM---GKEVPADAVNNMLAN 409 (435)
Q Consensus 341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~----~~R~~~R~~~~---~~~vp~~vi~~m~~~ 409 (435)
++.|.+||||.++..+..+..+++.++..+ .+.+++|.+| +.+ .+|+..|...+ ++.+|++....+.++
T Consensus 107 l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~~~e~~~~i~~r 184 (287)
T 1gvn_B 107 SDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKN 184 (287)
T ss_dssp HHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCCHHHHHHHHHH
T ss_pred HhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 788999999999998877777677776654 5666777775 766 78888886543 356775555554433
No 11
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.39 E-value=9.1e-12 Score=130.67 Aligned_cols=142 Identities=16% Similarity=0.079 Sum_probs=86.6
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCcc-CCCC---hHHHHHH-HHHHHHHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLR-KHNY---SERFQCL-MGRANAIFDVLL 337 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~-~~~~---~~~~~~~-~~~~~~~~~~ll 337 (435)
.+.+|+|+|+|||||||+|++|++.++ .....+|+.|++|+++. |... ...| ....-.. .+.+..++..+.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~--~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~ 111 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAV--KQYSSYNFFRPDNEEAMKVRKQCALAALRDVK 111 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHH--SCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhc--cCCccccccCcccHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999988752 22367889999888763 2100 0011 1111111 122222233222
Q ss_pred HHH-hcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh--HHHHHHHHHhhhhcC---CCCcHHHHHHHHh
Q 013831 338 SRA-SRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP--EDLKIRSVKRFKEMG---KEVPADAVNNMLA 408 (435)
Q Consensus 338 ~~a-l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~--ee~~~R~~~R~~~~~---~~vp~~vi~~m~~ 408 (435)
... .+.|.+||+|+||..+..|..+++.++..+ .+.++++.++ +.+.+|+.+|..... ...+++++..+.+
T Consensus 112 ~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~d~e~~~~~~~~ 189 (520)
T 2axn_A 112 SYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFMK 189 (520)
T ss_dssp HHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTSCHHHHHHHHHH
T ss_pred HHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccCCHHHHHHHHHH
Confidence 222 168999999999999999998777776554 4556666553 555566656643211 1246666666643
No 12
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.31 E-value=1.5e-11 Score=111.09 Aligned_cols=120 Identities=14% Similarity=0.125 Sum_probs=77.1
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHH-HHHHHHHHHHHHHHHHHhcC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQ-CLMGRANAIFDVLLSRASRT 343 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~-~~~~~~~~~~~~ll~~al~~ 343 (435)
.+.+|+++|+|||||||+|+.|++.++ +.+++.|.++..+. +.... ....|. .+...+...+...+..+++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~---~~~i~~D~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLR---LPLLSKDAFKEVMF--DGLGW--SDREWSRRVGATAIMMLYHTAATILQS 76 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHHH--HHHCC--CSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC---CeEecHHHHHHHHH--HhcCc--cchHHHHHhhHHHHHHHHHHHHHHHhC
Confidence 467999999999999999999999875 56788899887652 11000 111221 12212223333455556678
Q ss_pred CCeEEEeCCCcCHHHHHHHHHHHhc-CC-cEEEEEECCh-HHHHHHHHHhhh
Q 013831 344 PRNFIIDQTNVFKSARKRKLRLFVN-FR-KIAVVVFPKP-EDLKIRSVKRFK 392 (435)
Q Consensus 344 g~~vIlD~Tn~~~~~R~~~~~~~~~-~~-~~~vv~l~~~-ee~~~R~~~R~~ 392 (435)
|..||+|.++ ....+.+.+..++. .. ...+|+|+++ +++++|+.+|..
T Consensus 77 g~~vi~d~~~-~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~ 127 (193)
T 2rhm_A 77 GQSLIMESNF-RVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIA 127 (193)
T ss_dssp TCCEEEEECC-CHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred CCeEEEecCC-CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcC
Confidence 9999999998 43322222333333 33 5567888876 899999998864
No 13
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.28 E-value=6.5e-11 Score=105.63 Aligned_cols=119 Identities=17% Similarity=0.177 Sum_probs=76.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhcc-CCCc-cCCC-------C-hHHHHHHHHHHHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKV-PGLL-RKHN-------Y-SERFQCLMGRANAIFDV 335 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~-~G~~-~~~~-------~-~~~~~~~~~~~~~~~~~ 335 (435)
+.+|+++|+|||||||+|+.|++.++. .++.++.|.+++.+.- .+.. .... + ...|....... ..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 77 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPE-PWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAW----AE 77 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSS-CEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHH----HH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC-CeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHH----HH
Confidence 468999999999999999999998863 3777888988765321 0100 0000 0 12233333222 22
Q ss_pred HHHHHhcCCCeEEEeCCCcC-HHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 013831 336 LLSRASRTPRNFIIDQTNVF-KSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 336 ll~~al~~g~~vIlD~Tn~~-~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R 390 (435)
.+..+++.|.+||+|.+++. +..|..+.+.+... .+.+|++.++ +++.+|+..|
T Consensus 78 ~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~-~~~~v~l~~~~e~l~~R~~~r 133 (178)
T 1qhx_A 78 GVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDL-DVLWVGVRCDGAVAEGRETAR 133 (178)
T ss_dssp HHHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTC-CEEEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHhcCCeEEEEeccccChHHHHHHHHHhcCC-cEEEEEEECCHHHHHHHHHhh
Confidence 34445578899999998763 44455555555432 5667788776 9999999988
No 14
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.25 E-value=1.8e-11 Score=112.01 Aligned_cols=129 Identities=16% Similarity=0.230 Sum_probs=86.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH-----HHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL-----EQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRA 340 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir-----~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 340 (435)
+.+|+|+|+|||||||+|+.|++.++ +..++.|.++ ..+. .|. .+.... .... + ..+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg---~~~i~~d~~~~~~~~~~~~-~g~----~~~~~~--~~~~----~-~~l~~~ 82 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG---YPFIEGDALHPPENIRKMS-EGI----PLTDDD--RWPW----L-AAIGER 82 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT---CCEEEGGGGCCHHHHHHHH-HTC----CCCHHH--HHHH----H-HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---CEEEeCCcCcchhhHHHHh-cCC----CCCchh--hHHH----H-HHHHHH
Confidence 56899999999999999999999876 5677788653 1111 121 121110 1111 1 122233
Q ss_pred hcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCC
Q 013831 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPV 414 (435)
Q Consensus 341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~ 414 (435)
+..|..||+|.++.....|.. +..... ....+|+|+++ +++++|+.+|. ++..+.+.+.++.+.++.|.
T Consensus 83 ~~~~~~vivd~~~~~~~~~~~-l~~~~~-~~~~vi~l~~~~e~~~~Rl~~R~---~~~~~~~~~~~~~~~~~~~~ 152 (202)
T 3t61_A 83 LASREPVVVSCSALKRSYRDK-LRESAP-GGLAFVFLHGSESVLAERMHHRT---GHFMPSSLLQTQLETLEDPR 152 (202)
T ss_dssp HTSSSCCEEECCCCSHHHHHH-HHHTST-TCCEEEEEECCHHHHHHHHHHHH---SSCCCHHHHHHHHHHCCCCT
T ss_pred HhcCCCEEEECCCCCHHHHHH-HHHhcC-CCeEEEEEeCCHHHHHHHHHHhh---ccCCCHHHHHHHHHhcCCCC
Confidence 478899999999998877765 322221 14678888887 89999999984 34456889999999888664
No 15
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.24 E-value=2.9e-11 Score=115.09 Aligned_cols=126 Identities=17% Similarity=0.171 Sum_probs=83.5
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCC-CccCCC-ChHHHHHHHHHHHHHHHHHHHHHh
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPG-LLRKHN-YSERFQCLMGRANAIFDVLLSRAS 341 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G-~~~~~~-~~~~~~~~~~~~~~~~~~ll~~al 341 (435)
..+.+|+|+|+|||||||+|+.+++.++. .+++++.|.++..+.... ...... ....+... .+......++..++
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~-~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~--~~~~~~~~~~~~~~ 106 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQG-NIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKD--FAGKMVESLVTKLS 106 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTT-CCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHH--HHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCC-CcEEEecHHHHHhchhHHHHHHHcCchHHHHhhH--HHHHHHHHHHHHHH
Confidence 34689999999999999999999998752 367888888754321000 000111 11111110 01122234555556
Q ss_pred cCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhh
Q 013831 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK 392 (435)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~ 392 (435)
+.|.++|||.++.....+..+++.+...+ .+.++++.++ +++.+|+..|..
T Consensus 107 ~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~~ 159 (253)
T 2p5t_B 107 SLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRYE 159 (253)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHHH
T ss_pred hcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHH
Confidence 78889999999888877777777777655 6777788776 899999998854
No 16
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.20 E-value=6.9e-11 Score=105.84 Aligned_cols=134 Identities=10% Similarity=0.047 Sum_probs=77.9
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH----HHHHhccCCCccCCCCh--HHHHHHHHHHHHHHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL----ILEQMKVPGLLRKHNYS--ERFQCLMGRANAIFDVLLS 338 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~----ir~~~~~~G~~~~~~~~--~~~~~~~~~~~~~~~~ll~ 338 (435)
.+.+|+++|+|||||||+|+.|++.++.. + ++..|. +++.+. .|. ..+. ..|... ..+.+..++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~-~-i~d~~~~g~~i~~~~~-~g~---~~~~~~~~~~~~---~~~~i~~~l- 73 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGS-F-VFEPEEMGQALRKLTP-GFS---GDPQEHPMWIPL---MLDALQYAS- 73 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTC-E-ECCTHHHHHHHHHTST-TCC---SCGGGSTTHHHH---HHHHHHHHH-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCC-E-EEchhhhHHHHHHhCc-ccc---chhhhhHHHHHH---HHHHHHHHH-
Confidence 35789999999999999999999887631 2 234332 332221 221 1121 222211 111122222
Q ss_pred HHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCC
Q 013831 339 RASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLP 413 (435)
Q Consensus 339 ~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P 413 (435)
...|..||+|.|+..+..+...++.+...+ .+.+|++.++ +++++|+..|.. +....+.+..+.+.++.+
T Consensus 74 --~~~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~---r~~~~~~~~~~~~~~~~~ 145 (183)
T 2vli_A 74 --REAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQ---PQVNVGTVEDRLNELRGE 145 (183)
T ss_dssp --HHCSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC-------CCHHHHHHHHHHHTSG
T ss_pred --HhCCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccc---cchhHHHHHHHHHhhccc
Confidence 124889999999988877776666666543 4566888886 899999998842 225567777777776644
No 17
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.20 E-value=2.9e-10 Score=101.30 Aligned_cols=130 Identities=14% Similarity=0.173 Sum_probs=84.6
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH-----HhccCCCccCCCChH-HHHHHHHHHHHHHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE-----QMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLS 338 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~-----~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~ll~ 338 (435)
..++|+++|+|||||||+++.++..++ ++.++.|.++. ++ ..|. .+.. ....... .+..++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g---~~~i~~d~~~~~~~~~~~-~~g~----~~~~~~~~~~~~----~~~~~~~ 74 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLH---AAFLDGDFLHPRRNIEKM-ASGE----PLNDDDRKPWLQ----ALNDAAF 74 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHT---CEEEEGGGGCCHHHHHHH-HTTC----CCCHHHHHHHHH----HHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhC---cEEEeCccccchHHHHHh-hcCc----CCCccccccHHH----HHHHHHH
Confidence 367999999999999999999998765 67788886531 11 1232 1111 1111111 1222333
Q ss_pred HHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCC
Q 013831 339 RASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLP 413 (435)
Q Consensus 339 ~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P 413 (435)
.++..+..+|+|.+++.+..|.. ++... .+.+|++++| +++.+|+..|. ++..+...+..+.+.++.|
T Consensus 75 ~~~~~~~~~vi~~~~~~~~~~~~----l~~~~~~~~vv~l~~~~e~~~~R~~~R~---~~~~~~~~~~~~~~~~~~~ 144 (175)
T 1knq_A 75 AMQRTNKVSLIVCSALKKHYRDL----LREGNPNLSFIYLKGDFDVIESRLKARK---GHFFKTQMLVTQFETLQEP 144 (175)
T ss_dssp HHHHHCSEEEEECCCCSHHHHHH----HHTTCTTEEEEEEECCHHHHHHHHHTST---TCCCCHHHHHHHHHHCCCC
T ss_pred HHHhcCCcEEEEeCchHHHHHHH----HHhcCCCEEEEEEECCHHHHHHHHHhcc---CCCCchHHHHHHHHhhhCc
Confidence 44456889999999887665543 34433 5678899887 89999999983 3444577777777777655
No 18
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.17 E-value=9.6e-10 Score=98.95 Aligned_cols=120 Identities=19% Similarity=0.160 Sum_probs=74.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHH------------HHHHHHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERF------------QCLMGRANAIF 333 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~------------~~~~~~~~~~~ 333 (435)
+.+|+++|+|||||||+|+.+++.++ +.+++.|.+.+.....+. ..+.... +.........+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~ 76 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG---YTHLSAGELLRDERKNPD---SQYGELIEKYIKEGKIVPVEITISLLKREM 76 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHCTT---STTHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC---CeEEeHHHHHHHHHhccC---ChHHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence 57899999999999999999999876 677888877544211110 0010000 00111111122
Q ss_pred HHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhh
Q 013831 334 DVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFK 392 (435)
Q Consensus 334 ~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~ 392 (435)
...+ .++..+..||+|.+..+...+..+.+.+.... .-.+|++++| +++++|+.+|..
T Consensus 77 ~~~~-~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 136 (196)
T 1tev_A 77 DQTM-AANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK 136 (196)
T ss_dssp HHHH-HHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred Hhhh-ccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence 2222 23456889999999888877665544444322 2246788886 899999998854
No 19
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.15 E-value=2e-10 Score=101.28 Aligned_cols=132 Identities=11% Similarity=0.185 Sum_probs=76.2
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh-ccCCCccCCCChHHHHHHHHH-HHHHHHHHHHHHh--c
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM-KVPGLLRKHNYSERFQCLMGR-ANAIFDVLLSRAS--R 342 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~-~~~G~~~~~~~~~~~~~~~~~-~~~~~~~ll~~al--~ 342 (435)
.+|+++|+|||||||+|+.| +.++ +.+++.|++.++. ...+ ..........+...+. -...+..++..++ .
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g---~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 76 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG---AKVIVMSDVVRKRYSIEA-KPGERLMDFAKRLREIYGDGVVARLCVEELGTS 76 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT---CEEEEHHHHHHHHHHHHC----CCHHHHHHHHHHHHCTTHHHHHHHHHHCSC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC---CcEEEHhHHHHHHHHhcC-CChhHHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999 7766 5667766554432 2112 0000001111111111 0112333444445 6
Q ss_pred CCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHH
Q 013831 343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNM 406 (435)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m 406 (435)
.+..||+|.. .....+.. ++.+.. ....+|++++| +++.+|+..|.........+++..++
T Consensus 77 ~~~~vi~dg~-~~~~~~~~-l~~~~~-~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~ 138 (179)
T 3lw7_A 77 NHDLVVFDGV-RSLAEVEE-FKRLLG-DSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRD 138 (179)
T ss_dssp CCSCEEEECC-CCHHHHHH-HHHHHC-SCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHH
T ss_pred CCCeEEEeCC-CCHHHHHH-HHHHhC-CCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHH
Confidence 7889999997 77776664 333332 25678888886 89999999984322223345666655
No 20
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.12 E-value=4e-10 Score=103.06 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=86.6
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH-----HhccCCCccCCCChHHHHHHHHHHHHHHHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE-----QMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSR 339 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~-----~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 339 (435)
..++|+++|+|||||||+++.++..++ .+.++.|.+.. .+. .|. .+... ...... ..+...+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g---~~~i~~d~~~~~~~~~~~~-~g~----~~~~~--~~~~~~-~~~~~~~~~ 96 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETG---LEFAEADAFHSPENIATMQ-RGI----PLTDE--DRWPWL-RSLAEWMDA 96 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHC---CEEEEGGGGSCHHHHHHHH-TTC----CCCHH--HHHHHH-HHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhC---CeEEcccccccHHHHHHHh-cCC----CCCCc--ccccHH-HHHHHHHHH
Confidence 367999999999999999999998875 67777776521 111 121 12211 111111 122233434
Q ss_pred HhcCCCeEEEeCCCcCHHHHHHHHHHHhcC-CcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhcccCCC
Q 013831 340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNF-RKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYVLPV 414 (435)
Q Consensus 340 al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~-~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe~P~ 414 (435)
.+..+..+|+|.+...+..|.. +... ....+|++.++ +++.+|+.+|. ++..+.+.+..+++.++.+.
T Consensus 97 ~~~~g~~viid~~~~~~~~~~~----l~~~~~~~~vv~l~~~~e~l~~Rl~~R~---~~~~~~~~l~~~~~~~~~~~ 166 (200)
T 4eun_A 97 RADAGVSTIITCSALKRTYRDV----LREGPPSVDFLHLDGPAEVIKGRMSKRE---GHFMPASLLQSQLATLEALE 166 (200)
T ss_dssp HHHTTCCEEEEECCCCHHHHHH----HTTSSSCCEEEEEECCHHHHHHHHTTCS---CCSSCGGGHHHHHHHCCCCC
T ss_pred HHhcCCCEEEEchhhhHHHHHH----HHHhCCceEEEEEeCCHHHHHHHHHhcc---cCCCCHHHHHHHHHHhCCCC
Confidence 4567889999999888766553 3332 25677889887 89999998884 34456778888888887553
No 21
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.10 E-value=1.8e-09 Score=96.37 Aligned_cols=130 Identities=19% Similarity=0.278 Sum_probs=91.9
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP 344 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g 344 (435)
..+++.|+|++||||||+++.+... ..+++.|.++..+. .......+. ....+. +.......+..|
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~~-----~~~~~~d~~~g~~~--~~~~~~~~~---~~~~~~----~~~~~~~~~~~g 73 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFKP-----TEVISSDFCRGLMS--DDENDQTVT---GAAFDV----LHYIVSKRLQLG 73 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSCG-----GGEEEHHHHHHHHC--SSTTCGGGH---HHHHHH----HHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHccC-----CeEEccHHHHHHhc--CcccchhhH---HHHHHH----HHHHHHHHHhCC
Confidence 4689999999999999999997643 23577787765432 211111111 111111 112333445789
Q ss_pred CeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhccc
Q 013831 345 RNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYV 411 (435)
Q Consensus 345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe 411 (435)
..+++|+++.....|++++..++.+. +..+++++.| ..+-.|++.|. .+.+|++++.++.+.+.
T Consensus 74 ~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~---~~~~~~~vi~~~~~~l~ 139 (171)
T 4gp7_A 74 KLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT---DRQVEEYVIRKHTQQMK 139 (171)
T ss_dssp CCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS---SCCCCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc---CCCCCHHHHHHHHHHhh
Confidence 99999999999998888787777765 7888999988 78888999884 45899999999887654
No 22
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.10 E-value=2.4e-09 Score=96.18 Aligned_cols=118 Identities=21% Similarity=0.259 Sum_probs=72.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHH--------HHHHHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLM--------GRANAIFDVL 336 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~--------~~~~~~~~~l 336 (435)
.+.+|+++|+|||||||+|+.|++.++ +.+++.|.+.++....|.. .......+. +.....+...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~---~~~i~~d~~~~~~~~~~~~----~~~~i~~~~~~g~~~~~~~~~~~l~~~ 77 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFG---WVHLSAGDLLRQEQQSGSK----DGEMIATMIKNGEIVPSIVTVKLLKNA 77 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTTCT----THHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhC---CeEeeHHHHHHHHHhcCCH----HHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 457999999999999999999999876 6788887765442111210 111100000 0111112222
Q ss_pred HHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhh
Q 013831 337 LSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 337 l~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
+.. ..+..||+|....+...+..+.+.+.... .-.+|++++| +++++|+..|.
T Consensus 78 i~~--~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 132 (194)
T 1qf9_A 78 IDA--NQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRG 132 (194)
T ss_dssp HHT--STTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHH
T ss_pred HHh--cCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhcc
Confidence 211 16789999998887776665444444322 2246788876 89999999885
No 23
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens}
Probab=99.02 E-value=5.1e-09 Score=95.50 Aligned_cols=147 Identities=8% Similarity=-0.026 Sum_probs=100.0
Q ss_pred CeEEeCcCCCCCCeEEcCCCceEeecC--------CCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCC
Q 013831 42 QRVVLNPADCDLDFDIEDNGLKSSGLH--------QEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQH 113 (435)
Q Consensus 42 ~~v~l~~~d~~~~l~is~d~l~~~~~~--------~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~ 113 (435)
..++|||....++|.||+|+.+++... ++.|. .|..|.+.-++.+|++||||.+.. ..
T Consensus 13 ~~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~p~RF~-~~~~VLg~~~fssGrHYWEVev~~-------------~~ 78 (191)
T 2wl1_A 13 VNVILDAETAYPNLIFSDDLKSVRLGNKWERLPDGPQRFD-SCIIVLGSPSFLSGRRYWEVEVGD-------------KT 78 (191)
T ss_dssp CCCEECTTTSCTTEEECTTSCEEEECCTTCCCCCCTTSCS-SSCCEEEECCBCSSEEEEEEECTT-------------CS
T ss_pred eeeEECCccCCCceEECCCCcEEEECCcCCCCCCCccccc-ccccccCcccccCCCEEEEEEeCC-------------CC
Confidence 368999999999999999998876432 22332 477899999999999999999863 35
Q ss_pred cEEEEEecCCCC---CCCCCCCCcceEEec-CCceE--eCCCcccCCCCCCCCCEEEEEEecCCCCceeEEEEeCcccee
Q 013831 114 VCRVGTSRGDDP---VGKLGETEQSFGFGG-TGKFS--HGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLG 187 (435)
Q Consensus 114 ~~rvG~s~~~~~---~~~lG~d~~S~gy~~-~G~~~--~~~~~~~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~lg 187 (435)
.+.||++..... ...+|.+..+|+..- ++..+ ........- .-.....||++||++. ++|+|+. -...-
T Consensus 79 ~w~vGV~~~s~~Rkg~~~~~~~~~~W~l~~~~~~~y~~~~~~~~~l~-~~~~~~rVGVfLDye~---G~lSFY~-v~~~~ 153 (191)
T 2wl1_A 79 AWILGACKTSISRKGNMTLSPENGYWVVIMMKENEYQASSVPPTRLL-IKEPPKRVGIFVDYRV---GSISFYN-VTARS 153 (191)
T ss_dssp CEEEEEEETTCCSSSCCCCCGGGTEEEEEEEETTEEEECCSSCEECC-CSSCCSEEEEEEETTT---TEEEEEE-TTTTE
T ss_pred EEEEEEeeCCcCCCCccccCCCCCEEEEEEeCCCEEEEEcCCCccCc-cccCCcEEEEEEEcCC---CEEEEEE-CCCCc
Confidence 789999986532 335788888898753 24332 111111111 1234679999999998 8999985 22222
Q ss_pred ecccccC-CCCCccccccccccccCCCceeeEEEEc
Q 013831 188 TAKQFDA-GSNGLGVVDSAVKERQCESAVFPHILLK 222 (435)
Q Consensus 188 ~af~~~~-~~~~l~~~~~~~~g~~~~~~lfP~v~l~ 222 (435)
.-+++.. . ..++|||.+++.
T Consensus 154 ~i~tF~~~~---------------Fs~pl~P~F~~~ 174 (191)
T 2wl1_A 154 HIYTFASCS---------------FSGPLQPIFSPG 174 (191)
T ss_dssp EEEEECCCC---------------CCSCEEEEEECC
T ss_pred ceEEeCCCC---------------CCCCEEeEEEcc
Confidence 2233321 1 257999998764
No 24
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.02 E-value=4.5e-09 Score=94.88 Aligned_cols=118 Identities=20% Similarity=0.244 Sum_probs=72.3
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHH--------HHHHHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLM--------GRANAIFDVL 336 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~--------~~~~~~~~~l 336 (435)
.+.+|+++|+|||||||+|+.|++.++ +..++.|.+.+.....|.. ......... +.....+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~---~~~i~~d~~~~~~~~~~~~----~~~~i~~~~~~g~~~~~~~~~~~~~~~ 80 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG---YTHLSTGDLLRSEVSSGSA----RGKKLSEIMEKGQLVPLETVLDMLRDA 80 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTTCH----HHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC---CeEEcHHHHHHHHHHcCCh----HHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence 357899999999999999999999876 5678888765442111110 000000000 0111233344
Q ss_pred HHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831 337 LSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 337 l~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
+..++..|..||+|........+.. +..... ..-.+|+++++ +++.+|+..|.
T Consensus 81 i~~~~~~~~~vi~d~~~~~~~~~~~-~~~~~~-~~~~vi~l~~~~e~~~~R~~~R~ 134 (196)
T 2c95_A 81 MVAKVNTSKGFLIDGYPREVQQGEE-FERRIG-QPTLLLYVDAGPETMTQRLLKRG 134 (196)
T ss_dssp HHHHTTTCSCEEEESCCCSHHHHHH-HHHHTC-CCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHhccccCCcEEEeCCCCCHHHHHH-HHHhcC-CCCEEEEEECCHHHHHHHHHccC
Confidence 5555678899999987666554443 222111 23357788876 89999999884
No 25
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22
Probab=99.01 E-value=7.2e-09 Score=95.17 Aligned_cols=148 Identities=11% Similarity=0.002 Sum_probs=100.7
Q ss_pred CeEEeCcCCCCCCeEEcCCCceEeecC--------CCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCC
Q 013831 42 QRVVLNPADCDLDFDIEDNGLKSSGLH--------QEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQH 113 (435)
Q Consensus 42 ~~v~l~~~d~~~~l~is~d~l~~~~~~--------~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~ 113 (435)
..++||+....++|.||+|+.+++... ++.|. .|..|.++-++.+|++||||.|.. ..
T Consensus 10 ~~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~-~~~~VLg~~~fsSGrHYWEVev~~-------------~~ 75 (201)
T 2fbe_A 10 VDMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFD-TALCVLGTPRFTSGRHYWEVDVGT-------------SQ 75 (201)
T ss_dssp CCCCEETTTCCTTEEECTTSSEEEECSSCCCCCCCTTSCS-SSCEEEESCCBSSSEEEEEEECTT-------------CS
T ss_pred EeEEECcccCCCceEECCCCcEEEECCccCCCCCCcccee-eccceecCccccCCceEEEEEeCC-------------CC
Confidence 358999999999999999999876432 22332 477899999999999999999963 35
Q ss_pred cEEEEEecCCCC---CCCCCCCCcceEEec-CCceE--eCCCcccCCCCCCCCCEEEEEEecCCCCceeEEEEeCcccee
Q 013831 114 VCRVGTSRGDDP---VGKLGETEQSFGFGG-TGKFS--HGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLG 187 (435)
Q Consensus 114 ~~rvG~s~~~~~---~~~lG~d~~S~gy~~-~G~~~--~~~~~~~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~lg 187 (435)
.+.||++..... ...++.+..+|...- +|..+ ++......- .-.....||++||++. ++|+|+..- ..-
T Consensus 76 ~w~vGV~~~si~Rkg~~~~~~~~g~W~l~~~~~~~y~~~~~~~~~l~-~~~~~~rVGVfLDye~---G~lSFY~v~-~~~ 150 (201)
T 2fbe_A 76 VWDVGVCKESVNRQGKIELSSEHGFLTVGCREGKVFAASTVPMTPLW-VSPQLHRVGIFLDVGM---RSIAFYNVS-DGC 150 (201)
T ss_dssp EEEEEEEETTSCCSSCCCCCTTTTEEEEEEETTTEEEECSSSCEEEC-CCTTCCEEEEEEETTT---TEEEEEETT-TTE
T ss_pred EEEEEEeeCccCCCCcccccCCCCEEEEEEeCCCEEEEEcCCcccCc-cCCCCCEEEEEEEcCC---CEEEEEeCC-CCc
Confidence 689999986532 335677888998853 34432 222211111 1234579999999998 899998522 222
Q ss_pred ecccccCCCCCccccccccccccCCCceeeEEEEc
Q 013831 188 TAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK 222 (435)
Q Consensus 188 ~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~ 222 (435)
.-+++... ...++|||.+++.
T Consensus 151 ~i~tF~~~--------------~Fs~pL~P~F~~~ 171 (201)
T 2fbe_A 151 HIYTFIEI--------------PVCEPWRPFFAHK 171 (201)
T ss_dssp EEEEECSC--------------CCSSCEEEEEEEE
T ss_pred eeEEEcCC--------------CCCCCEEeEEEec
Confidence 22333210 0257999999874
No 26
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*
Probab=99.01 E-value=7.4e-09 Score=94.12 Aligned_cols=145 Identities=10% Similarity=0.030 Sum_probs=100.3
Q ss_pred CeEEeCcCCCCCCeEEcCCCceEeecC--------CCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCC
Q 013831 42 QRVVLNPADCDLDFDIEDNGLKSSGLH--------QEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQH 113 (435)
Q Consensus 42 ~~v~l~~~d~~~~l~is~d~l~~~~~~--------~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~ 113 (435)
..++|||....++|.||+|+.+++... ++.|. .|..|.+.-++.+|++||||.+.. ..
T Consensus 9 ~~vtLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~-~~~~VLg~~~fsSGrHYWEVev~~-------------~~ 74 (188)
T 2vok_A 9 VHITLDRNTANSWLIISKDRRQVRMGDTHQNVSDNKERFS-NYPMVLGAQRFSSGKMYWEVDVTQ-------------KE 74 (188)
T ss_dssp CCCCBCGGGSCTTEEECTTSCEEEECSSCCCCCCCTTSCC-SSSEEEBSCCBSSSEEEEEEECTT-------------CS
T ss_pred cceEECCccCCCCeEECCCCCEEEECCccCCCCCCcccee-eeccccccCcccCCCeEEEEEecC-------------Cc
Confidence 357899999999999999999876432 22332 477899999999999999999863 35
Q ss_pred cEEEEEecCCCC---CCCCCCCCcceEEec-CCc-e-EeCCCcccCCCCCCCCCEEEEEEecCCCCceeEEEEeCcc--c
Q 013831 114 VCRVGTSRGDDP---VGKLGETEQSFGFGG-TGK-F-SHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGK--W 185 (435)
Q Consensus 114 ~~rvG~s~~~~~---~~~lG~d~~S~gy~~-~G~-~-~~~~~~~~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~--~ 185 (435)
.+.||++..... ...+|.+..+|+..- +|. . +|+.. ...- .-.....||++||++. ++|+|+..-. .
T Consensus 75 ~w~vGV~~~si~Rkg~~~~~~~~~~W~l~~~~~~y~~~~~~~-~~l~-~~~~~~rVGVfLDye~---G~lSFY~v~~~~~ 149 (188)
T 2vok_A 75 AWDLGVCRDSVQRKGQFSLSPENGFWTIWLWQDSYEAGTSPQ-TTLH-IQVPPCQIGIFVDYEA---GVVSFYNITDHGS 149 (188)
T ss_dssp CEEEEEEETTCCCSSCCCCSTTTTEEEEEEETTEEEECSSSC-EEEC-CSSCCSEEEEEEETTT---TEEEEEETTTTTE
T ss_pred eEEEEEeeCCcCCCCccccCCCCCEEEEEEECCEEEEEeCCc-cCEe-cCCCCCEEEEEEEcCC---CEEEEEECCCCCe
Confidence 689999986432 346789999999863 343 1 12221 1111 1124679999999998 8999985322 2
Q ss_pred eeecccccC-CCCCccccccccccccCCCceeeEEEEc
Q 013831 186 LGTAKQFDA-GSNGLGVVDSAVKERQCESAVFPHILLK 222 (435)
Q Consensus 186 lg~af~~~~-~~~~l~~~~~~~~g~~~~~~lfP~v~l~ 222 (435)
+.-.|. . . ..++|||.+++.
T Consensus 150 ~I~tF~--~~~---------------Fs~pL~P~F~~~ 170 (188)
T 2vok_A 150 LIYTFS--ECV---------------FAGPLRPFFNVG 170 (188)
T ss_dssp EEEEEC--SCC---------------CCSCEEEEEECC
T ss_pred eeEEec--CCC---------------CCCCEEeEEEec
Confidence 332332 1 1 257999998764
No 27
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.00 E-value=5.3e-10 Score=106.46 Aligned_cols=135 Identities=13% Similarity=0.136 Sum_probs=84.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH--HHhcc-CCCcc------------C-C-----CChHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL--EQMKV-PGLLR------------K-H-----NYSERFQC 324 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir--~~~~~-~G~~~------------~-~-----~~~~~~~~ 324 (435)
+++|+++|+|||||||+|+.|++.++ +.+++.|.+. +.+.+ .+..+ . . .++. ..
T Consensus 1 M~li~I~G~~GSGKSTla~~La~~~~---~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~ 75 (253)
T 2ze6_A 1 MLLHLIYGPTCSGKTDMAIQIAQETG---WPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDA--ES 75 (253)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC---CCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCH--HH
T ss_pred CeEEEEECCCCcCHHHHHHHHHhcCC---CeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccH--HH
Confidence 36899999999999999999999876 5677777753 11110 00000 0 0 1111 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhc----CC-cEEEEEECCh--HHHHHHHHHhhhh--cC
Q 013831 325 LMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN----FR-KIAVVVFPKP--EDLKIRSVKRFKE--MG 395 (435)
Q Consensus 325 ~~~~~~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~----~~-~~~vv~l~~~--ee~~~R~~~R~~~--~~ 395 (435)
..+.+ ...+ .++..|..+|++.... ...+. .+.. .+ ...++++..| +++.+|+.+|..+ ..
T Consensus 76 f~~~~----~~~i-~~~~~g~~vIl~gg~~--~~~~~---~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~~ml~~ 145 (253)
T 2ze6_A 76 AHRRL----IFEV-DWRKSEEGLILEGGSI--SLLNC---MAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVAEMFAI 145 (253)
T ss_dssp HHHHH----HHHH-HTTTTSSEEEEEECCH--HHHHH---HHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHH----HHHH-HHHhCCCCeEEeccHH--HHHHH---HHhcccccccCceEEEEecchhHHHHHHHHHHHHHHHHhc
Confidence 22222 2234 4557889888886532 11111 1222 22 4577888764 8899999999765 35
Q ss_pred CCCcHHHHHHHHhcccCCCC
Q 013831 396 KEVPADAVNNMLANYVLPVN 415 (435)
Q Consensus 396 ~~vp~~vi~~m~~~fe~P~~ 415 (435)
..++++++..+.+.|+.|..
T Consensus 146 ~~~~~~~l~e~~~~~~~p~~ 165 (253)
T 2ze6_A 146 REDRPSLLEELAELWNYPAA 165 (253)
T ss_dssp CSSSCCHHHHHHHHHTSTTH
T ss_pred CcccchHHHHHHHhcCCcch
Confidence 56777889999999998865
No 28
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.00 E-value=4.6e-09 Score=96.77 Aligned_cols=116 Identities=15% Similarity=0.166 Sum_probs=70.5
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHh--
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRAS-- 341 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al-- 341 (435)
.|+|+|+|||||||+|+.|++.++ +.+++.|++.++....+.. ........... .......++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~r~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ 74 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG---IPHISTGDMFRAAMKEETP----LGLEAKSYIDKGELVPDEVTIGIVKERLGK 74 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS---CCEEEHHHHHHHHHHTTCH----HHHHHHHHHTTTCCCCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHHHhcCCH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Confidence 378899999999999999999886 6788887765543111110 00000000000 0001112222232
Q ss_pred -cCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHh
Q 013831 342 -RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 342 -~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~~-ee~~~R~~~R 390 (435)
..+..+|+|....+...+..+.+.+...+ .. .++++.+| +++++|+..|
T Consensus 75 ~~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3dl0_A 75 DDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR 127 (216)
T ss_dssp GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred ccccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence 23789999997777776665555555443 23 57788776 8999999998
No 29
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.00 E-value=5.2e-09 Score=94.20 Aligned_cols=116 Identities=19% Similarity=0.156 Sum_probs=75.2
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChH-HHHHHHHHHHHHHHHHHHHHh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRAS 341 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~ll~~al 341 (435)
...+|+++|+|||||||+++.++..+. +..+..++.|.++..+ .+. ..+.. .....+... ...+..++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~--~~~---~~~~~~~r~~~~~~~----~~~~~~~~ 82 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTV--SEG---AGFTREERLRHLKRI----AWIARLLA 82 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTT--TTT---CCCCHHHHHHHHHHH----HHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHH--hhc---cCCChhhHHHHHHHH----HHHHHHHH
Confidence 367899999999999999999987653 2225667778876543 221 12222 111111111 11222335
Q ss_pred cCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHH
Q 013831 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVK 389 (435)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~ 389 (435)
..|..||+|.++.+...|..+.+.+...+ ...+|+++++ +++.+|+..
T Consensus 83 ~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~ 132 (186)
T 2yvu_A 83 RNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPK 132 (186)
T ss_dssp TTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHH
T ss_pred hCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhh
Confidence 78899999999988887776555555443 5677899886 889888754
No 30
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.99 E-value=5.1e-09 Score=108.42 Aligned_cols=123 Identities=19% Similarity=0.077 Sum_probs=73.5
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCC-ccCCCC---hHHHHHHH-HHHHHHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGL-LRKHNY---SERFQCLM-GRANAIFDVLL 337 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~-~~~~~~---~~~~~~~~-~~~~~~~~~ll 337 (435)
.+.+|+|+|+|||||||++++|++.+. ......++.|.++.++. |. .....| .....+.. ..+..++..+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~--g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~- 114 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMV--KTYKSFEFFLPDNEEGLKIRKQCALAALNDV- 114 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHH--CSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH-
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhc--cCCCcccccCCCCHHHHHHHHHHHHHHHHHH-
Confidence 357899999999999999999987642 12256788888877642 21 000011 11111111 2222223222
Q ss_pred HHHh--cCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECC--hHHHHHHHHHh
Q 013831 338 SRAS--RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPK--PEDLKIRSVKR 390 (435)
Q Consensus 338 ~~al--~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~--~ee~~~R~~~R 390 (435)
...+ ..|..+|+|+||.+.+.|+.+++.++..+ .+.++.+.+ ++.+.+|...|
T Consensus 115 ~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~ 172 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQV 172 (469)
T ss_dssp HHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHh
Confidence 2223 57889999999999999998877776654 343444433 34555554444
No 31
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.98 E-value=1.1e-08 Score=93.30 Aligned_cols=119 Identities=18% Similarity=0.157 Sum_probs=70.0
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH-hccCCCccCCCChHHHHHHHHH----HHHHHHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ-MKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSR 339 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~-~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~ 339 (435)
.+.+|+|+|+|||||||+|+.|++.++ +.+++.|.+.++ +. .+.. ........... -......++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~---~~~i~~d~~~r~~~~-~~~~----~g~~i~~~~~~g~~~~~~~~~~~~~~ 90 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG---IPQISTGELFRRNIE-EGTK----LGVEAKRYLDAGDLVPSDLTNELVDD 90 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHHHH-TTCH----HHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC---CcEEehhHHHHHHHH-cCCh----HHHHHHHHHHcCCcccHHHHHHHHHH
Confidence 356899999999999999999999876 557787776443 21 1110 00000000000 00001112221
Q ss_pred H---hcCCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhh
Q 013831 340 A---SRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 340 a---l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
. ...+..||+|.+.....++..+.+.+...+ .-.+|+|++| +++++|+..|.
T Consensus 91 ~~~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~ 148 (201)
T 2cdn_A 91 RLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG 148 (201)
T ss_dssp HTTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC
T ss_pred HHhcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 1 134678999988777766664333344332 2357788876 89999999983
No 32
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.97 E-value=2.1e-08 Score=91.36 Aligned_cols=121 Identities=21% Similarity=0.276 Sum_probs=71.8
Q ss_pred CCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhc-cCCCccCCCChHHHHHHH--------HHHHHHH
Q 013831 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMK-VPGLLRKHNYSERFQCLM--------GRANAIF 333 (435)
Q Consensus 263 ~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~-~~G~~~~~~~~~~~~~~~--------~~~~~~~ 333 (435)
+..+.+|+++|+|||||||+|+.|++.++ +.+++.|.+.++.. ..|. .+........ +.....+
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g---~~~i~~d~~~~~~~~~~~~----~~~~~i~~~~~~g~~~~~~~~~~~l 84 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS---FVHLSAGDLLRAEQGRAGS----QYGELIKNCIKEGQIVPQEITLALL 84 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSS---CEEEEHHHHHHHHHHSTTC----SCHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcC---ceEEeHHHHHHHHHhccCC----HHHHHHHHHHHcCCcCCHHHHHHHH
Confidence 34578999999999999999999999886 67888887655421 1121 0111000000 0111223
Q ss_pred HHHHHHHhcCC-CeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhh
Q 013831 334 DVLLSRASRTP-RNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFK 392 (435)
Q Consensus 334 ~~ll~~al~~g-~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~ 392 (435)
...+..++..| ..+|+|......+... .++.... ..-.+|++++| +++++|+..|..
T Consensus 85 ~~~i~~~l~~g~~~~i~dg~~~~~~~~~-~~~~~~~-~~~~~i~l~~~~e~~~~Rl~~R~~ 143 (203)
T 1ukz_A 85 RNAISDNVKANKHKFLIDGFPRKMDQAI-SFERDIV-ESKFILFFDCPEDIMLERLLERGK 143 (203)
T ss_dssp HHHHHHHHHTTCCEEEEETCCCSHHHHH-HHHHHTC-CCSEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCeEEEeCCCCCHHHHH-HHHHhcC-CCCEEEEEECCHHHHHHHHHhccc
Confidence 33444445566 6899998655544433 2332211 12346788876 889999988853
No 33
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.96 E-value=1.7e-08 Score=90.34 Aligned_cols=117 Identities=23% Similarity=0.292 Sum_probs=69.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRAS 341 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al 341 (435)
..+|+++|+|||||||+++.+++.++ +.++++|.+.++..-.|.. ........... .......++..++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~---~~~i~~d~~~~~~~~~~~~----~~~~i~~~~~~g~~~~~~~~~~~~~~~l 76 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG---FKKLSTGDILRDHVARGTP----LGERVRPIMERGDLVPDDLILELIREEL 76 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT---CEEECHHHHHHHHHHTTCH----HHHHHHHHHHTTCCCCHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---CeEecHHHHHHHHHHcCCh----HHHHHHHHHHcCCcCCHHHHHHHHHHHh
Confidence 56899999999999999999998876 6788887665432001110 00000000000 0011222344444
Q ss_pred cCCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhh
Q 013831 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
..+ +|+|.+......+..+...+...+ .-.+|++++| +++.+|+..|.
T Consensus 77 ~~~--~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 127 (186)
T 3cm0_A 77 AER--VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRA 127 (186)
T ss_dssp CSE--EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred cCC--EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 544 999988777665553222344333 2356788876 89999999884
No 34
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.95 E-value=5.9e-09 Score=95.95 Aligned_cols=116 Identities=17% Similarity=0.225 Sum_probs=70.7
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhc-
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR- 342 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~- 342 (435)
.|+++|+|||||||+|+.|++.++ +.+++.|.+.++....+.. ........... .......++..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~r~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ 74 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE---IPHISTGDMFRAAIKNGTE----LGLKAKSFMDQGNLVPDEVTIGIVHERLSK 74 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHHTTCH----HHHHHHHHHHHTCCCCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEeeHHHHHHHHHhcCCH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Confidence 478899999999999999998876 5678887765543111210 00100111100 00111223333332
Q ss_pred --CCCeEEEeCCCcCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHh
Q 013831 343 --TPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 343 --~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~~-ee~~~R~~~R 390 (435)
.+..+|+|....+...+..+.+.+...+ .. .+|++++| +++++|+..|
T Consensus 75 ~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3fb4_A 75 DDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR 127 (216)
T ss_dssp GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred ccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 3789999997777776665444554443 23 57788876 8999999998
No 35
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.94 E-value=6.4e-09 Score=94.06 Aligned_cols=115 Identities=18% Similarity=0.216 Sum_probs=71.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc-----c-----CCCChHHHHHHHHHHHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL-----R-----KHNYSERFQCLMGRANAIFDV 335 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~-----~-----~~~~~~~~~~~~~~~~~~~~~ 335 (435)
+.+|+++|+|||||||+|+.|++.++ +.+++.|.+.++....+.. + ...... +.. ...+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~---~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~--~~~----~~~~~~ 82 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG---FTHLSTGELLREELASESERSKLIRDIMERGDLVPS--GIV----LELLKE 82 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCH--HHH----HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC---CeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCH--HHH----HHHHHH
Confidence 46899999999999999999999876 6788888764332101110 0 000000 111 112233
Q ss_pred HHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhh
Q 013831 336 LLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 336 ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
.+...+..+..||+|....+...+..+.+.+ . ..-.+|+++++ +++.+|+..|.
T Consensus 83 ~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~-~-~~~~~i~l~~~~~~~~~R~~~R~ 137 (199)
T 2bwj_A 83 AMVASLGDTRGFLIDGYPREVKQGEEFGRRI-G-DPQLVICMDCSADTMTNRLLQMS 137 (199)
T ss_dssp HHHHHTTSCSCEEEETCCSSHHHHHHHHHHT-C-CCSEEEEEECCHHHHHHHHHHTC
T ss_pred HHhcccccCccEEEeCCCCCHHHHHHHHHhc-C-CCCEEEEEECCHHHHHHHHHcCC
Confidence 4444456788999999888776655432221 1 12246788776 88999999883
No 36
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=98.91 E-value=1.6e-08 Score=91.77 Aligned_cols=141 Identities=17% Similarity=0.190 Sum_probs=98.1
Q ss_pred CeEEeCcCCCCCCeEEcCCCceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEec
Q 013831 42 QRVVLNPADCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSR 121 (435)
Q Consensus 42 ~~v~l~~~d~~~~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s~ 121 (435)
..|+|||.... +|.||+|+.+++.. .+..|.+.-++.+|++||||.|.. ...+.||++.
T Consensus 12 v~vTLDp~TA~-~l~lSed~r~Vr~~-------~~~~VLG~~~ftsGrHYWEVeV~~-------------~~~W~vGV~~ 70 (186)
T 3uv9_A 12 VDVTLATNNIS-HAVIAEDKRQVSSR-------AGTGVLGSQSITSGKHYWEVDVSK-------------KSAWILGVCA 70 (186)
T ss_dssp CCCCCCCCSSC-CCEECTTSSCEECC-------CSSCEECSSCBCSSEEEEEEECTT-------------CSCEEEEEES
T ss_pred EEeEeCCCCcC-CceECCCCCEEeec-------CCCcCcCCCCCCCCCEEEEEEEcC-------------CCcEEEEEEE
Confidence 35889999877 59999999999752 346799999999999999999863 4678999987
Q ss_pred CCCC--------CCCCCCCCcceEEe-cCCce---EeCCCcc-cCCC------CCCCCCEEEEEEecCCCCceeEEEEe-
Q 013831 122 GDDP--------VGKLGETEQSFGFG-GTGKF---SHGGNFL-NFGE------KFGVGDTIICAIDLESKPLATIGFAK- 181 (435)
Q Consensus 122 ~~~~--------~~~lG~d~~S~gy~-~~G~~---~~~~~~~-~yg~------~f~~gDvIGc~ld~~~~p~~~i~ft~- 181 (435)
.... ...+|.+..+|+.. .+|.. +|++... ..++ .-.....||++||++. ++|+|+-
T Consensus 71 ~~~~r~~~~~~~~~~~~~~~g~W~l~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~p~rVGVfLDye~---G~lSFYnv 147 (186)
T 3uv9_A 71 GFQSDAMYNIEQNENYQPKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEA---CTVSFFNI 147 (186)
T ss_dssp CSTTTTTTTHHHHTCCCGGGTEEEEEEETTTEEEEEECCCTTSTTSCEEEECCCSSCCSEEEEEEETTT---TEEEEEET
T ss_pred EEecccccccCCCcccCCCCCEEEEEECCCCEEEEEeCCCccccCCCccCcccccccCCEEEEEeecCC---CEEEEEeC
Confidence 4321 23678888999985 45543 3444332 2222 1234679999999998 8999983
Q ss_pred -CccceeecccccCCCCCccccccccccccCCCceeeEEEEc
Q 013831 182 -NGKWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILLK 222 (435)
Q Consensus 182 -NG~~lg~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l~ 222 (435)
|...+.-.|. ... ..++|||..++.
T Consensus 148 ~d~~~lI~tF~-~~~---------------Fs~pL~P~F~~~ 173 (186)
T 3uv9_A 148 TNHGFLIYKFS-QCS---------------FSKPVFPYLNPR 173 (186)
T ss_dssp TTTTEEEEEEC-SCC---------------CSSCBEEEEECT
T ss_pred CCCceEEEEeC-CcC---------------CCCCEEeEEECC
Confidence 2222333332 111 256899998875
No 37
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.91 E-value=9.3e-09 Score=97.10 Aligned_cols=120 Identities=21% Similarity=0.222 Sum_probs=73.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRA 340 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~a 340 (435)
.+.+|+++|+|||||||+|+.|++.++ +.++++|++.++....+.. .......+... ....+..++...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g---~~~is~~~~~r~~~~~~~~----~g~~i~~~~~~g~~~~~~~~~~~~~~~ 100 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC---YCHLSTGDLLREAAEKKTE----LGLKIKNIINEGKLVDDQMVLSLVDEK 100 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHTTSSSH----HHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC---CeEEecHHHHHHHHhccch----HHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 467899999999999999999998886 6788887765543212210 01111111100 001112233333
Q ss_pred hcC---CCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhh
Q 013831 341 SRT---PRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 341 l~~---g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
+.. +..+|+|....+..+...+.+.+...+ .-.++++.+| +++++|+..|.
T Consensus 101 l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~ 157 (243)
T 3tlx_A 101 LKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRL 157 (243)
T ss_dssp TTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred HhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCC
Confidence 333 788999996666655554444444443 2356778776 89999999884
No 38
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.90 E-value=1.3e-08 Score=94.78 Aligned_cols=116 Identities=15% Similarity=0.086 Sum_probs=67.8
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhcC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASRT 343 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~~ 343 (435)
+|+++|+|||||||+|+.|++.++ +.++++|++.++....+.. .......+... -.+.+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg---~~~i~~dd~~r~~~~~~~~----~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~ 74 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS---LAHIESGGIFREHIGGGTE----LGKKAKEFIDRGDLVPDDITIPMVLETLES 74 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT---CEEEEHHHHHHHHTTTTCH----HHHHHHHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CeEEchHHHHHHHHHcCCH----HHHHHHHHHHcCCcCcHHHHHHHHHHHHhc
Confidence 589999999999999999999876 6778887775543111110 00000000000 001122233333444
Q ss_pred --CCeEEEeCCCcCHHHHHHHHHHH-hcCC--cEEEEEECCh-HHHHHHHHHhh
Q 013831 344 --PRNFIIDQTNVFKSARKRKLRLF-VNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 344 --g~~vIlD~Tn~~~~~R~~~~~~~-~~~~--~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
|..||+|.......+... +..+ ...+ .-.+|+++++ +++++|+..|.
T Consensus 75 ~~g~~vIlDg~~~~~~~~~~-l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 75 KGKDGWLLDGFPRNTVQAQK-LFEALQEKGMKINFVIEILLPREVAKNRIMGRR 127 (223)
T ss_dssp HCTTCEEEESCCCSHHHHHH-HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred ccCCeEEEeCCcCCHHHHHH-HHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 899999975555444443 3332 3322 3356788876 89999999884
No 39
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.86 E-value=1.9e-08 Score=93.57 Aligned_cols=119 Identities=21% Similarity=0.266 Sum_probs=69.4
Q ss_pred CCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHH--------HHHHHHH
Q 013831 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMG--------RANAIFD 334 (435)
Q Consensus 263 ~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~--------~~~~~~~ 334 (435)
.+++++|++.|+|||||+|.|+.|++.++ +.+||+.+++++....+.. .......+++ .....+.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g---~~hIstGdllR~~i~~~t~----lg~~~~~~~~~G~lVpde~~~~lv~ 98 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH---FNHLSSGDLLRAEVQSGSP----KGKELKAMMERGELVPLEVVLALLK 98 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHC---CEEECHHHHHHHHHTTCCH----HHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHC---CceEcHHHHHHHHHHcCCc----hHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 35678999999999999999999999987 7899996654432112210 0011111111 1111222
Q ss_pred HHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhc-CC-cEEEEEECCh-HHHHHHHHHhhh
Q 013831 335 VLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FR-KIAVVVFPKP-EDLKIRSVKRFK 392 (435)
Q Consensus 335 ~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~-~~~vv~l~~~-ee~~~R~~~R~~ 392 (435)
..+.........+|||.---+..+-. .+.. .. .-.+++++++ +++.+|+..|..
T Consensus 99 ~~l~~~~~~~~g~ilDGfPRt~~Qa~----~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~ 155 (217)
T 3umf_A 99 EAMIKLVDKNCHFLIDGYPRELDQGI----KFEKEVCPCLCVINFDVSEEVMRKRLLKRAE 155 (217)
T ss_dssp HHHHHHTTTCSEEEEETBCSSHHHHH----HHHHHTCCCSEEEEEECCHHHHHHHHSCC--
T ss_pred HHHhhccccccCcccccCCCcHHHHH----HHHHhCCccCEEEeccCCHHHHHHHHhcccc
Confidence 23323334566799998433333222 2222 22 3467788887 889999988843
No 40
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens}
Probab=98.86 E-value=5.9e-08 Score=88.58 Aligned_cols=146 Identities=12% Similarity=0.126 Sum_probs=96.7
Q ss_pred CeEEeCcCCCCCCeEEcCCCceEeecCC---------CCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCC
Q 013831 42 QRVVLNPADCDLDFDIEDNGLKSSGLHQ---------EGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQ 112 (435)
Q Consensus 42 ~~v~l~~~d~~~~l~is~d~l~~~~~~~---------~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~ 112 (435)
..++|||....++|.||+|+.+++.... +.|. .|..|.+.-++.+|++||||.|.. .
T Consensus 12 ~~vtLDp~TA~~~L~lSed~~~v~~~~~~~q~~p~~p~RF~-~~~~VLg~~~fssGrhYWEVev~~-------------~ 77 (193)
T 3kb5_A 12 EELTFDPSSAHPSLVVSSSGRRVECSEQKAPPAGEDPRQFD-KAVAVVAHQQLSEGEHYWEVDVGD-------------K 77 (193)
T ss_dssp CCCCBCTTTSCTTEEEETTTTEEEECCSCCCCCCSCTTSCS-SSCEEEBSCCBCSSEEEEEEECTT-------------C
T ss_pred ccEEECCCCCCCCEEECCCCCEEEECCcCCCCCCCCccccc-cccEEccCCcccCCCEEEEEEeCc-------------C
Confidence 4589999999999999999988765321 2222 367899999999999999999863 3
Q ss_pred CcEEEEEecCCCC---CCCCCCCCcceEEe-cCCce--EeCCCccc--CCCCCCCCCEEEEEEecCCCCceeEEEEe--C
Q 013831 113 HVCRVGTSRGDDP---VGKLGETEQSFGFG-GTGKF--SHGGNFLN--FGEKFGVGDTIICAIDLESKPLATIGFAK--N 182 (435)
Q Consensus 113 ~~~rvG~s~~~~~---~~~lG~d~~S~gy~-~~G~~--~~~~~~~~--yg~~f~~gDvIGc~ld~~~~p~~~i~ft~--N 182 (435)
..+.||++..... ...++.+..+|+.. .+|.. .+...... ...+-..-..||++||++. ++|+|+- +
T Consensus 78 ~~W~lGV~~~s~~Rkg~~~~~~~~~~W~l~~~~~~~y~~~~~~~~~~~l~~~~~~~~rVGVfLDye~---G~lSFY~v~~ 154 (193)
T 3kb5_A 78 PRWALGVIAAEAPRRGRLHAVPSQGLWLLGLREGKILEAHVEAKEPRALRSPERRPTRIGLYLSFGD---GVLSFYDASD 154 (193)
T ss_dssp SSEEEEEEETTSCCSSSCCCSGGGTEEEEEEETTTEEEECCSSSSCEECCCCSSCCSEEEEEEETTT---TEEEEEECCS
T ss_pred ceEEEEEeeCCcCcCCCcCCCCCCCEEEEEEeCCCEEEEEeCCCccEEEeecCCCCCEEEEEEEcCC---CEEEEEeCCC
Confidence 5789999986532 23455566789875 34432 22221111 1110123458999999998 8999874 2
Q ss_pred c--cceeecccccCCCCCccccccccccccCCCceeeEEEE
Q 013831 183 G--KWLGTAKQFDAGSNGLGVVDSAVKERQCESAVFPHILL 221 (435)
Q Consensus 183 G--~~lg~af~~~~~~~~l~~~~~~~~g~~~~~~lfP~v~l 221 (435)
+ ..+--.|+ .. ..++|||..++
T Consensus 155 ~~~~s~I~tF~--~~---------------Ft~pl~P~F~~ 178 (193)
T 3kb5_A 155 ADALVPLFAFH--ER---------------LPRPVYPFFDV 178 (193)
T ss_dssp TTCCEEEEEEC--SC---------------CCSCEEEEEEC
T ss_pred CCCceEEEEeC--CC---------------CCCCeECEEEc
Confidence 1 23333342 22 25789999865
No 41
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.84 E-value=1.9e-08 Score=93.04 Aligned_cols=119 Identities=17% Similarity=0.152 Sum_probs=67.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHH--------HHHHHHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLM--------GRANAIFDVLL 337 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~--------~~~~~~~~~ll 337 (435)
+.+|+++|+|||||||+|+.|++.++ +.++++|++.++..-.+.. .......+. +.....+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~~~~~~~~~~~~----~g~~i~~~~~~g~~~~~~~~~~~l~~~l 76 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH---AAHLATGDMLRSQIAKGTQ----LGLEAKKIMDQGGLVSDDIMVNMIKDEL 76 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTTCH----HHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC---ceEEehhHHHHHHHHcCCh----HHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence 56899999999999999999999886 6778887765432101110 000000000 00111112222
Q ss_pred HHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cE-EEEEECCh-HHHHHHHHHhh
Q 013831 338 SRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR-KI-AVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 338 ~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~-~vv~l~~~-ee~~~R~~~R~ 391 (435)
......+..+|+|....+..++..+-..+...+ .. .+|+++++ +++++|+..|.
T Consensus 77 ~~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~ 133 (220)
T 1aky_A 77 TNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRL 133 (220)
T ss_dssp HHCGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred HhccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCC
Confidence 111124678999985445444443222333322 23 57788886 89999998874
No 42
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.83 E-value=2.9e-08 Score=91.52 Aligned_cols=116 Identities=21% Similarity=0.265 Sum_probs=73.3
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH-HHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhc
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI-LEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR 342 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i-r~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~ 342 (435)
+|++.|+|||||+|.|+.+++.++ +.+||+.++ |.++. .+. .........+.. -......++..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g---~~~istGdllR~~i~-~~t----~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~ 73 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG---FVHISTGDILREAVQ-KGT----PLGKKAKEYMERGELVPDDLIIALIEEVFP 73 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHH-HTC----HHHHHHHHHHHHTCCCCHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC---CeEEcHHHHHHHHHH-hcC----hhhhhHHHHHhcCCcCCHHHHHHHHHHhhc
Confidence 578889999999999999999987 788998665 44332 111 001111111111 01123346666667
Q ss_pred CCCeEEEeCCCcCHHHHHHHHHHHhcCC-c-EEEEEECCh-HHHHHHHHHhh
Q 013831 343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-K-IAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~-~~vv~l~~~-ee~~~R~~~R~ 391 (435)
+...+|||.---+..+...+...+...+ . -.+++++++ +++++|+..|.
T Consensus 74 ~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~ 125 (206)
T 3sr0_A 74 KHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRR 125 (206)
T ss_dssp SSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred cCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCc
Confidence 7778999996566555554333444433 3 367788887 89999999883
No 43
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.81 E-value=2e-08 Score=92.40 Aligned_cols=114 Identities=17% Similarity=0.091 Sum_probs=71.0
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC---CccEEEeccHHHHHHhccCCCccCCCCh-HHHHHHHHHHHHHHHHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNLILEQMKVPGLLRKHNYS-ERFQCLMGRANAIFDVLLSRA 340 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~---~~~~~~ls~D~ir~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~ll~~a 340 (435)
...+|+++|+|||||||+++.++..++ +..++.++.|.++..+. +. ..+. .......... ...+..+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~--~~---~~~~~~~r~~~~~~~----~~~~~~~ 94 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLN--KD---LGFSEADRNENIRRI----AEVAKLF 94 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTT--TT---CCSSHHHHHHHHHHH----HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhc--cc---cCCCHHHHHHHHHHH----HHHHHHH
Confidence 357999999999999999999988654 11267888887764431 11 1122 2111122211 1234445
Q ss_pred hcCCCeEEEeCCCcCHHHHHHHHHHHh------cCC-cEEEEEECCh-HHHHHHH
Q 013831 341 SRTPRNFIIDQTNVFKSARKRKLRLFV------NFR-KIAVVVFPKP-EDLKIRS 387 (435)
Q Consensus 341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~------~~~-~~~vv~l~~~-ee~~~R~ 387 (435)
++.|..||+|.++.+...|..+.+... ... ...+|+|+++ +++.+|+
T Consensus 95 l~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 95 ADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp HHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred HHCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 678999999976655666664333333 112 4678899887 8888884
No 44
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.81 E-value=3e-08 Score=91.73 Aligned_cols=118 Identities=18% Similarity=0.204 Sum_probs=68.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHH-
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRA- 340 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~a- 340 (435)
+..|+++|+|||||||+|+.|++.++ +.++++|++.++..-.+. ........+... -......++..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~li~~~~~~~t----~~g~~i~~~~~~g~~~~~~~~~~~i~~~l 77 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG---LAHLSTGDMLREAIKNGT----KIGLEAKSIIESGNFVGDEIVLGLVKEKF 77 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTC------CCHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC---ceEEehhHHHHHHHHcCC----HHHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence 45789999999999999999999886 678888876554210111 011111111100 001111222222
Q ss_pred --hcCCCeEEEeCCCcCHHHHHHHHH-HHhcCC--cEEEEEECCh-HHHHHHHHHhh
Q 013831 341 --SRTPRNFIIDQTNVFKSARKRKLR-LFVNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 341 --l~~g~~vIlD~Tn~~~~~R~~~~~-~~~~~~--~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
...+..+|+|....+..+... +. .+...+ .-.+|+++++ +++++|+..|.
T Consensus 78 ~~~~~~~~~i~dg~~~~~~~~~~-l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 133 (217)
T 3be4_A 78 DLGVCVNGFVLDGFPRTIPQAEG-LAKILSEIGDSLTSVIYFEIDDSEIIERISGRC 133 (217)
T ss_dssp HTTTTTTCEEEESCCCSHHHHHH-HHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred hccccCCCEEEeCCCCCHHHHHH-HHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 234788999975444443333 33 333322 3367888886 89999998874
No 45
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.80 E-value=2.5e-08 Score=90.92 Aligned_cols=113 Identities=15% Similarity=0.119 Sum_probs=72.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChH-HHHHHHHHHHHHHHHHHHHHh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRAS 341 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~ll~~al 341 (435)
..++|+++|+|||||||+++.++..++ +...+.+..|.++..+. . ...+.. ........ +..+.....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~--~---~~~~~~~~~~~~~~~----~~~~~~~~~ 94 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLN--R---DLSFKAEDRAENIRR----VGEVAKLFA 94 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTT--T---TCCSSHHHHHHHHHH----HHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhh--c---ccCcChHHHHHHHHH----HHHHHHHHH
Confidence 368999999999999999999988763 22123677787754332 1 112222 11111111 112333344
Q ss_pred cCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHH
Q 013831 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS 387 (435)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~ 387 (435)
..+..+|++..+..+..|.. ++.......+.+||+.++ +++.+|.
T Consensus 95 ~~~~~vi~~~~~~~~~~r~~-~~~~~~~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 95 DAGIICIASLISPYRTDRDA-CRSLLPEGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp HTTCEEEEECCCCCHHHHHH-HHHTSCTTSEEEEEECCCHHHHHHHC
T ss_pred hCCceEEEecCCchHHHHHH-HHHhcCCCCEEEEEEeCCHHHHHHhc
Confidence 68899999999998888876 333322225677899987 8999886
No 46
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.75 E-value=6.2e-08 Score=85.26 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=69.0
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPRN 346 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~~ 346 (435)
.+|+++|+|||||||+|+.|++.++ +..++.|.+..... .. ....+ . ..++..+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~---~~~i~~d~~~~~~~---------~~---~~~~~--------~-~~~l~~~~~ 57 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK---YPIIKGSSFELAKS---------GN---EKLFE--------H-FNKLADEDN 57 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC---CCEEECCCHHHHTT---------CH---HHHHH--------H-HHHHTTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CeeecCcccccchh---------HH---HHHHH--------H-HHHHHhCCC
Confidence 5899999999999999999999876 55677775543210 00 11111 1 123467888
Q ss_pred EEEeCCC---------------cCHHHHHHHHHHHhc-C-CcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHh
Q 013831 347 FIIDQTN---------------VFKSARKRKLRLFVN-F-RKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLA 408 (435)
Q Consensus 347 vIlD~Tn---------------~~~~~R~~~~~~~~~-~-~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~ 408 (435)
||.|... +....+. .+.. + ....+|+++++ +++.+|+..|. ......+.+.++.+
T Consensus 58 vi~dr~~~~~~v~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~---r~~~~~~~~~~~~~ 130 (173)
T 3kb2_A 58 VIIDRFVYSNLVYAKKFKDYSILTERQLR----FIEDKIKAKAKVVYLHADPSVIKKRLRVRG---DEYIEGKDIDSILE 130 (173)
T ss_dssp EEEESCHHHHHHHTTTBTTCCCCCHHHHH----HHHHHHTTTEEEEEEECCHHHHHHHHHHHS---CSCCCHHHHHHHHH
T ss_pred eEEeeeecchHHHHHHHHHhhHhhHHHHH----HHhccCCCCCEEEEEeCCHHHHHHHHHhcC---CcchhhhHHHHHHH
Confidence 9999432 1222222 2222 1 23457888876 89999999983 22334456666655
Q ss_pred ccc
Q 013831 409 NYV 411 (435)
Q Consensus 409 ~fe 411 (435)
.++
T Consensus 131 ~~~ 133 (173)
T 3kb2_A 131 LYR 133 (173)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 47
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.74 E-value=4.2e-08 Score=104.36 Aligned_cols=115 Identities=14% Similarity=0.075 Sum_probs=76.1
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChHH-HHHHHHHHHHHHHHHHHHHh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSRAS 341 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~ll~~al 341 (435)
...+|+++|+|||||||+|+.|++.+. +..++.++.|.++..+. . ...|... .+...... ..++..++
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~--~---~~~fs~~dree~~r~i----~eva~~~l 121 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLN--K---NLGFSPEDREENVRRI----AEVAKLFA 121 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTT--T---TCCSSHHHHHHHHHHH----HHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccC--c---cccCChhhhHHHHHHH----HHHHHHHH
Confidence 467999999999999999999998762 22367777777654331 1 1123321 11222211 22344456
Q ss_pred cCCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHH
Q 013831 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSV 388 (435)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~ 388 (435)
+.|..||.|.++.+...|..+.+.+.... ...+|+|+++ +++.+|+.
T Consensus 122 ~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~ 170 (630)
T 1x6v_B 122 DAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDV 170 (630)
T ss_dssp HTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCT
T ss_pred hCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhc
Confidence 78999999987777777776555555544 5788999987 89999965
No 48
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=4.5e-08 Score=89.16 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=63.8
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP 344 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g 344 (435)
.+++|+++|+|||||||+++.+++.++ +..++.|.+.... .|..-...+....+.... .....++..+ ..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~---~~~i~~d~~~~~~--~g~~i~~~~~~~~~~~~~---~~e~~~l~~l-~~~ 94 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN---VPFIDLDWYIEER--FHKTVGELFTERGEAGFR---ELERNMLHEV-AEF 94 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT---CCEEEHHHHHHHH--HTSCHHHHHHHHHHHHHH---HHHHHHHHHH-TTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC---CCEEcchHHHHHH--hCCcHHHHHHhcChHHHH---HHHHHHHHHH-hhc
Confidence 367899999999999999999999886 5677888875543 121000001111011111 1111233333 356
Q ss_pred CeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH
Q 013831 345 RNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV 388 (435)
Q Consensus 345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~ 388 (435)
.++||+........+. .++.+.. ...+|+++++ +++.+|+.
T Consensus 95 ~~~vi~~ggg~~~~~~-~~~~l~~--~~~vi~L~~~~e~l~~Rl~ 136 (199)
T 3vaa_A 95 ENVVISTGGGAPCFYD-NMEFMNR--TGKTVFLNVHPDVLFRRLR 136 (199)
T ss_dssp SSEEEECCTTGGGSTT-HHHHHHH--HSEEEEEECCHHHHHHHHH
T ss_pred CCcEEECCCcEEccHH-HHHHHHc--CCEEEEEECCHHHHHHHHh
Confidence 7788885433222122 1223332 2457788886 89999998
No 49
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.71 E-value=1.2e-07 Score=100.28 Aligned_cols=115 Identities=13% Similarity=0.150 Sum_probs=78.6
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCCC---ccEEEeccHHHHHHhccCCCccCCCChHH-HHHHHHHHHHHHHHHHHH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE---KRYILLGTNLILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSR 339 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~~---~~~~~ls~D~ir~~~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~ll~~ 339 (435)
+.+.+|+++|+|||||||+|+.|++.+.. ..++.++.|.++..+ .+. ..|... ....+.. +..++..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l--~~~---~~f~~~er~~~i~r----i~~v~~~ 464 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHEL--SSE---LGFTREDRHTNIQR----IAFVATE 464 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHT--CTT---CCCSHHHHHHHHHH----HHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHh--ccc---cCCChhHHHHHHHH----HHHHHHH
Confidence 34678999999999999999999987642 336788889887754 332 123221 1111111 1224444
Q ss_pred HhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHH
Q 013831 340 ASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRS 387 (435)
Q Consensus 340 al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~ 387 (435)
+++.|..||+|.++.++..|....+.+...+.+.+||++++ +++.+|.
T Consensus 465 ~~~~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~ 513 (573)
T 1m8p_A 465 LTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSD 513 (573)
T ss_dssp HHHTTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHC
T ss_pred HHhCCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHh
Confidence 56789999999988888888865555554345678899987 8998884
No 50
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.70 E-value=1.7e-07 Score=84.37 Aligned_cols=118 Identities=13% Similarity=0.112 Sum_probs=69.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~ 345 (435)
.++++++|+|||||||+++.++....+ .+.++.|.+++... .|...............+ .+...+......+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g--~~~i~~d~~~~~~~-~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~ 74 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDN--SAYIEGDIINHMVV-GGYRPPWESDELLALTWK----NITDLTVNFLLAQN 74 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSS--EEEEEHHHHHTTCC-TTCCCGGGCHHHHHHHHH----HHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCC--eEEEcccchhhhhc-cccccCccchhHHHHHHH----HHHHHHHHHHhcCC
Confidence 368999999999999999999886543 46788888754321 221111111111111222 22223333345778
Q ss_pred eEEEeCCCcCHHHHHHHHHHHh--cCC-cEEEEEECCh-HHHHHHHHHhh
Q 013831 346 NFIIDQTNVFKSARKRKLRLFV--NFR-KIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 346 ~vIlD~Tn~~~~~R~~~~~~~~--~~~-~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
.+|+|.. ..+..++.+.+.+. ... ++.++++.++ +++.+|...|.
T Consensus 75 ~~ild~~-~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~ 123 (189)
T 2bdt_A 75 DVVLDYI-AFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRK 123 (189)
T ss_dssp EEEEESC-CCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSC
T ss_pred cEEEeec-cCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcc
Confidence 9999986 45555444333332 223 5566777665 89999998884
No 51
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.69 E-value=1.2e-07 Score=85.00 Aligned_cols=133 Identities=15% Similarity=0.179 Sum_probs=70.5
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccH---------HHHHHhccCCCccCCCChHHHHHHH--HHHHHHHHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN---------LILEQMKVPGLLRKHNYSERFQCLM--GRANAIFDVL 336 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D---------~ir~~~~~~G~~~~~~~~~~~~~~~--~~~~~~~~~l 336 (435)
+|+++|+|||||||+++.+++.++..++.++++| .+++.+. .|. +......+. ......+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~i~~~~~-~g~-----~~~~~~~~~~~~~~~~~l~~~ 75 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILL-TEE-----LDERTELLLFEASRSKLIEEK 75 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHH-HSC-----CCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchHHHHHHHHc-CCC-----CCHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999987621114445543 2222221 121 111111111 0111223344
Q ss_pred HHHHhcCCCeEEEeCC------------CcCHHHHHHHHH-HHhc-CCcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHH
Q 013831 337 LSRASRTPRNFIIDQT------------NVFKSARKRKLR-LFVN-FRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPAD 401 (435)
Q Consensus 337 l~~al~~g~~vIlD~T------------n~~~~~R~~~~~-~~~~-~~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~ 401 (435)
+..+++.|..||+|.. .+....-.. +. .+.. ...-.+|++++| +++++|+.+|. ..-.++
T Consensus 76 i~~~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~----~~~~~~ 150 (195)
T 2pbr_A 76 IIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKN-LNEFATRGVKPDITLLLDIPVDIALRRLKEKN----RFENKE 150 (195)
T ss_dssp HHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHH-HHHHHHTTCCCSEEEEEECCHHHHHHHHHTTT----CCCCHH
T ss_pred HHHHHhCCCEEEECcchhHHHHHccccCCCCHHHHHH-HHHHhhcCCCCCEEEEEeCCHHHHHHHhhccC----ccchHH
Confidence 5556688999999952 222211111 11 1121 123357788886 89999998652 222566
Q ss_pred HHHHHHhccc
Q 013831 402 AVNNMLANYV 411 (435)
Q Consensus 402 vi~~m~~~fe 411 (435)
.+.++.+.++
T Consensus 151 ~~~~~~~~~~ 160 (195)
T 2pbr_A 151 FLEKVRKGFL 160 (195)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655444
No 52
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.68 E-value=9.4e-08 Score=85.53 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=33.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
+.+|+++|+|||||||+|+.+++.++ +..++.|.++.++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~---~~~i~~d~~~~~~ 43 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK---RILYDSDKEIEKR 43 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC---CCEEEChHHHHHH
Confidence 56899999999999999999999876 6678889887664
No 53
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.68 E-value=1.4e-07 Score=88.08 Aligned_cols=120 Identities=20% Similarity=0.229 Sum_probs=67.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRA 340 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~a 340 (435)
.+..|+++|+|||||||+|+.|++.++ +.++++|++.++....+. ........+... .......++..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~li~~~~~~~~----~~g~~i~~~~~~g~~~~~~~~~~~i~~~ 87 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC---VCHLATGDMLRAMVASGS----ELGKKLKATMDAGKLVSDEMVLELIEKN 87 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHHHHTC----HHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC---CceecHHHHHHHHHHcCC----hhHHHHHHHHHCCCcCCHHHHHHHHHHH
Confidence 356899999999999999999999886 667888776544210110 000000000000 001111223332
Q ss_pred hc---CCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhh
Q 013831 341 SR---TPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 341 l~---~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
+. .+..+|+|....+..+...+.+.+...+ .-.+|+++.+ +++++|+..|.
T Consensus 88 l~~~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 144 (233)
T 1ak2_A 88 LETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRL 144 (233)
T ss_dssp HTSGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCE
T ss_pred HhcccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 22 3457999974444444443222333322 3467888886 89999998883
No 54
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.61 E-value=1.9e-07 Score=86.79 Aligned_cols=116 Identities=16% Similarity=0.197 Sum_probs=64.1
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRA 340 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~a 340 (435)
.+.+|+++|+|||||||+|+.|++.++ +..++.|++.+.....|.. .......+... .......++...
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~~~~~~~~~~~~----~g~~i~~~~~~g~~~~~~~~~~~~~~~ 78 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFE---LKHLSSGDLLRDNMLRGTE----IGVLAKAFIDQGKLIPDDVMTRLALHE 78 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSS---SEEEEHHHHHHHHHHHTCH----HHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcC---CeEEechHHHHHhhhcCCh----HHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence 357899999999999999999999886 6778887664432101110 00000000000 000001111111
Q ss_pred hc--CCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 013831 341 SR--TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 341 l~--~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R 390 (435)
+. .+..+|+|....+..+.. .+..+ ...-.+|+++++ +++++|+..|
T Consensus 79 l~~~~~~~~vid~~~~~~~~~~-~l~~~--~~~~~vi~L~~~~~~~~~R~~~R 128 (227)
T 1zd8_A 79 LKNLTQYSWLLDGFPRTLPQAE-ALDRA--YQIDTVINLNVPFEVIKQRLTAR 128 (227)
T ss_dssp HHTCTTSCEEEESCCCSHHHHH-HHHTT--SCCCEEEEEECCHHHHHHHHTCE
T ss_pred HhcccCCCEEEeCCCCCHHHHH-HHHHh--cCCCEEEEEECCHHHHHHHHHcC
Confidence 22 467899999765544322 22222 122257788886 8899999877
No 55
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.59 E-value=3.8e-07 Score=80.40 Aligned_cols=109 Identities=18% Similarity=0.211 Sum_probs=62.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTPR 345 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g~ 345 (435)
+.+|+++|+|||||||+|+.|++.++ +.+++.|.++.++ .|..-...+...-+..... ....++.. +. +.
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg---~~~id~d~~~~~~--~g~~~~~~~~~~~~~~~~~---~~~~~~~~-l~-~~ 71 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARALG---YEFVDTDIFMQHT--SGMTVADVVAAEGWPGFRR---RESEALQA-VA-TP 71 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHH--HCSCHHHHHHHHHHHHHHH---HHHHHHHH-HC-CS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC---CcEEcccHHHHHH--hCCCHHHHHHHcCHHHHHH---HHHHHHHH-hh-cC
Confidence 35799999999999999999999876 6688889887654 2321000000000011111 11122222 33 44
Q ss_pred eEEEeCC---CcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH--Hh
Q 013831 346 NFIIDQT---NVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV--KR 390 (435)
Q Consensus 346 ~vIlD~T---n~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~--~R 390 (435)
.+||+.. .+.+..+.. + .. .-.+|++.+| +++++|+. .|
T Consensus 72 ~~vi~~g~~~~~~~~~~~~-l---~~--~~~~i~l~~~~e~~~~R~~~~~r 116 (173)
T 1e6c_A 72 NRVVATGGGMVLLEQNRQF-M---RA--HGTVVYLFAPAEELALRLQASLQ 116 (173)
T ss_dssp SEEEECCTTGGGSHHHHHH-H---HH--HSEEEEEECCHHHHHHHHHHHHC
T ss_pred CeEEECCCcEEeCHHHHHH-H---Hc--CCeEEEEECCHHHHHHHHhhccC
Confidence 6677643 234444432 2 22 1256788776 89999998 66
No 56
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.59 E-value=2.1e-07 Score=85.09 Aligned_cols=108 Identities=15% Similarity=0.132 Sum_probs=63.2
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCCC--------------------ccEEEeccHHHHHHhccCCCccC---C---C
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE--------------------KRYILLGTNLILEQMKVPGLLRK---H---N 317 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~~--------------------~~~~~ls~D~ir~~~~~~G~~~~---~---~ 317 (435)
....+|+++|+|||||||+++.|++.++. ..+..++.|.+...+. .|..-. + .
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 88 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLK-EGQFLEFDKYANNF 88 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHH-TTCEEEEEEETTEE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHH-cCCCEEeHHhCCCe
Confidence 45678999999999999999999988753 1244455565543221 121100 0 0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEEC-Ch-HHHHHHHHHh
Q 013831 318 YSERFQCLMGRANAIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFP-KP-EDLKIRSVKR 390 (435)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~-~~-ee~~~R~~~R 390 (435)
|.... ..++.+++.|.+||+|.+. ..... + ...+. ...+||+. ++ +++.+|+..|
T Consensus 89 ~~~~~------------~~i~~~l~~g~~vi~d~~~---~~~~~-l--~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R 147 (204)
T 2qor_A 89 YGTLK------------SEYDLAVGEGKICLFEMNI---NGVKQ-L--KESKHIQDGIYIFVKPPSIDILLGRLKNR 147 (204)
T ss_dssp EEEEH------------HHHHHHHHTTCEEEEECCH---HHHHH-H--HHCSSCSCCEEEEEECSCHHHHHHHHHTC
T ss_pred ecCCH------------HHHHHHHHcCCeEEEEECH---HHHHH-H--HHhcCCCCeEEEEEcCCCHHHHHHHHHHc
Confidence 11100 1233345789999999742 11111 1 12233 44667774 55 8999999888
No 57
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.59 E-value=2.9e-07 Score=83.72 Aligned_cols=123 Identities=14% Similarity=0.038 Sum_probs=65.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCc-cEEEe---ccHHHHHHhccCCCccCCCChHHHHHHH---HHHHHHHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEK-RYILL---GTNLILEQMKVPGLLRKHNYSERFQCLM---GRANAIFDVLLS 338 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~-~~~~l---s~D~ir~~~~~~G~~~~~~~~~~~~~~~---~~~~~~~~~ll~ 338 (435)
..+|+++|+|||||||+|+.|++.++.. .++.. ..+.+++.+. .+.. ...+.+....+. .+. ..+...+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~-~~~~-~~~~~~~~~~~~~~~~r~-~~~~~~i~ 80 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIK-EAKK-KDLLTPLTFSLIHATDFS-DRYERYIL 80 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHH-HHTT-TSCCCHHHHHHHHHHHHH-HHHHHTHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHh-cccc-ccCCCHHHHHHHHHHHHH-HHHHHHHH
Confidence 4689999999999999999999876532 13221 1133433221 1100 001111111111 111 12223344
Q ss_pred HHhcCCCeEEEeCCCcCHHHHH-------HHHHHHhcC-C-cEEEEEECCh-HHHHHHHH-Hhh
Q 013831 339 RASRTPRNFIIDQTNVFKSARK-------RKLRLFVNF-R-KIAVVVFPKP-EDLKIRSV-KRF 391 (435)
Q Consensus 339 ~al~~g~~vIlD~Tn~~~~~R~-------~~~~~~~~~-~-~~~vv~l~~~-ee~~~R~~-~R~ 391 (435)
.++..|..||+|....+..... .++..+... . .-.+|+++++ +++.+|+. +|.
T Consensus 81 ~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~ 144 (213)
T 2plr_A 81 PMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKR 144 (213)
T ss_dssp HHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTC
T ss_pred HHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccc
Confidence 5567899999998544321111 223334332 2 2346788776 89999998 773
No 58
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.58 E-value=2.4e-07 Score=97.54 Aligned_cols=114 Identities=20% Similarity=0.236 Sum_probs=76.3
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChHH-HHHHHHHHHHHHHHHHHHHh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSRAS 341 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~ll~~al 341 (435)
...+|+++|+|||||||+|+.|++.+. +..+..++.|.+++.+ .+. ..|... ....++. +...+..++
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l--~~~---~~f~~~er~~~l~~----i~~~~~~~l 441 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHL--SRG---LGFSKEDRITNILR----VGFVASEIV 441 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHT--CTT---CCSSHHHHHHHHHH----HHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhh--ccc---ccccHHHHHHHHHH----HHHHHHHHH
Confidence 357899999999999999999988653 2336788889887764 232 123221 1111121 122344456
Q ss_pred cCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH
Q 013831 342 RTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV 388 (435)
Q Consensus 342 ~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~ 388 (435)
+.|..||+|.++.++..|....+.+.. ..+.+|++.++ +++++|+.
T Consensus 442 ~~G~~VI~d~~~~~~~~r~~~~~~l~~-~d~~vV~L~~~~e~~~~Rl~ 488 (546)
T 2gks_A 442 KHNGVVICALVSPYRSARNQVRNMMEE-GKFIEVFVDAPVEVCEERDV 488 (546)
T ss_dssp HTTCEEEEECCCCCHHHHHHHHTTSCT-TCEEEEEEECCGGGHHHHCC
T ss_pred hCCCEEEEEcCCCCHHHHHHHHHHhhc-CCEEEEEEeCCHHHHHHHhh
Confidence 789999999999988877754333332 35677888887 89998875
No 59
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.58 E-value=2.7e-07 Score=83.07 Aligned_cols=131 Identities=11% Similarity=0.076 Sum_probs=62.6
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEecc---------HHHHHHhccCCCccCCCChHHHHHHH--HHHHHHHHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT---------NLILEQMKVPGLLRKHNYSERFQCLM--GRANAIFDVL 336 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~---------D~ir~~~~~~G~~~~~~~~~~~~~~~--~~~~~~~~~l 336 (435)
+|++.|+|||||||+++.+++.++..++.++.+ +.+++.+. .+. ..+.-..+. ......+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~g~~~~~~~~-~~~-----~~~~~~~~~~~~~r~~~~~~- 74 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILL-EEE-----VTPKAELFLFLASRNLLVTE- 74 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSCSSHHHHHHHHHHH-HSC-----CCHHHHHHHHHHHHHHHHHH-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCCCCcHHHHHHHHHH-hcC-----CCHHHHHHHHHHHHHHHHHH-
Confidence 689999999999999999998762111333322 12222221 111 111111111 001112233
Q ss_pred HHHHhcCCCeEEEeCC------------CcCHHHHHHHHHHHhc-CC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHH
Q 013831 337 LSRASRTPRNFIIDQT------------NVFKSARKRKLRLFVN-FR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPAD 401 (435)
Q Consensus 337 l~~al~~g~~vIlD~T------------n~~~~~R~~~~~~~~~-~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~ 401 (435)
+..++..|..||+|.. ++....... +..+.. .. .-.++++++| +++++|+.+| ++.-..+
T Consensus 75 i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R----~~~~~~~ 149 (197)
T 2z0h_A 75 IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEE-LNDFATDGLIPDLTFYIDVDVETALKRKGEL----NRFEKRE 149 (197)
T ss_dssp HTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHH-HHHHHHTTCCCSEEEEEECCHHHHHHHC-------CCCCCHH
T ss_pred HHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHH-HHHHhcCCCCCCEEEEEeCCHHHHHHHHhcc----CcccHHH
Confidence 4445678999999942 233333332 222222 11 3456788776 8999999988 2222335
Q ss_pred HHHHHHhcc
Q 013831 402 AVNNMLANY 410 (435)
Q Consensus 402 vi~~m~~~f 410 (435)
.+.++.+.+
T Consensus 150 ~~~~~~~~~ 158 (197)
T 2z0h_A 150 FLERVREGY 158 (197)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665544
No 60
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.55 E-value=6.5e-07 Score=83.71 Aligned_cols=142 Identities=14% Similarity=0.077 Sum_probs=74.5
Q ss_pred CCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc---------HHHHHHhccCCCccCCCChHHHHHHHHHHHH--
Q 013831 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT---------NLILEQMKVPGLLRKHNYSERFQCLMGRANA-- 331 (435)
Q Consensus 263 ~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~---------D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~-- 331 (435)
.....+|++.|+|||||||+++.+++.++. ...++.+ ..+++.+ ..+.. ..+.-..+.-.+..
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~~~~~g~~i~~~~-~~~~~----~~~~~~~ll~~a~r~~ 96 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPGGVPTGEEIRKIV-LEGND----MDIRTEAMLFAASRRE 96 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTTTCHHHHHHHHHT-TC-------CCHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCCCCchHHHHHHHH-hCCCC----CCHHHHHHHHHHHHHH
Confidence 345689999999999999999999988763 2222222 1222221 12210 11111111111111
Q ss_pred HHHHHHHHHhcCCCeEEEe----------C--CCcCHHHHHHHHHHHhc-C-CcEEEEEECCh-HHHHHHHHHhhhhcCC
Q 013831 332 IFDVLLSRASRTPRNFIID----------Q--TNVFKSARKRKLRLFVN-F-RKIAVVVFPKP-EDLKIRSVKRFKEMGK 396 (435)
Q Consensus 332 ~~~~ll~~al~~g~~vIlD----------~--Tn~~~~~R~~~~~~~~~-~-~~~~vv~l~~~-ee~~~R~~~R~~~~~~ 396 (435)
.+.+.+..+++.|..||+| . .++....... +..+.. . ..-.++++++| +++++|+.+|.....+
T Consensus 97 ~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~-l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr 175 (229)
T 4eaq_A 97 HLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRA-LNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNR 175 (229)
T ss_dssp HCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHH-HHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----C
T ss_pred HHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHH-HHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccc
Confidence 1112234556789999999 3 2455555443 333432 2 24456788876 8999999998432122
Q ss_pred C--CcHHHHHHHHhccc
Q 013831 397 E--VPADAVNNMLANYV 411 (435)
Q Consensus 397 ~--vp~~vi~~m~~~fe 411 (435)
. -+.+..+++.+.|.
T Consensus 176 ~e~~~~~~~~rv~~~y~ 192 (229)
T 4eaq_A 176 LDQEDLKFHEKVIEGYQ 192 (229)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 1 13455555555553
No 61
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.51 E-value=1.8e-07 Score=86.02 Aligned_cols=113 Identities=18% Similarity=0.172 Sum_probs=62.6
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhcC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASRT 343 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~~ 343 (435)
.|+++|+|||||||+|+.|++.++ +.++++|++.++..-.|.. .......+... ....+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g---~~~i~~d~~~r~~~~~~~~----~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~ 74 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG---IPQISTGDMLRAAVKSGSE----LGKQAKDIMDAGKLVTDELVIALVKERIAQ 74 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHHHTCT----TTGGGHHHHHHTCCCCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CeEEeHHHHHHHHHHcCCh----HHHHHHHHHHCCCcCCHHHHHHHHHHHHhc
Confidence 378999999999999999999876 5678887665442101110 00000000000 001122233333333
Q ss_pred ---CCeEEEeCCCcCHHHHHHHHHHHhcC--CcEEEEEECCh-HHHHHHHHHhh
Q 013831 344 ---PRNFIIDQTNVFKSARKRKLRLFVNF--RKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 344 ---g~~vIlD~Tn~~~~~R~~~~~~~~~~--~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
+..+|+|..-.+..+.. .+... ..-.+++++++ +++++|+..|.
T Consensus 75 ~~~~~~~i~dg~~~~~~~~~----~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~ 124 (214)
T 1e4v_A 75 EDCRNGFLLDGFPRTIPQAD----AMKEAGINVDYVLEFDVPDELIVDRIVGRR 124 (214)
T ss_dssp GGGGGCEEEESCCCSHHHHH----HHHHTTCCCSEEEEEECCHHHHHHHHHTEE
T ss_pred cccCCCEEEeCCCCCHHHHH----HHHhcCCCCCEEEEEECCHHHHHHHHHCCc
Confidence 35799998533333222 23322 22356788876 89999998874
No 62
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.49 E-value=1.2e-06 Score=77.93 Aligned_cols=115 Identities=15% Similarity=0.089 Sum_probs=64.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHhccCCCccCCCChH-HHHHHHHHHHHHHHHHHHHHhc
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQMKVPGLLRKHNYSE-RFQCLMGRANAIFDVLLSRASR 342 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~ll~~al~ 342 (435)
..+|+++|++||||||+++.++..+. +..++.++.|.++..+. . ...+.. ..+....+... .......
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~----~~~~~~~ 75 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLN--K---NLGFSPEDREENVRRIAE----VAKLFAD 75 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTT--T---TCCSSHHHHHHHHHHHHH----HHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHh--h---ccccccccHHHHHHHHHH----HHHHHHH
Confidence 57899999999999999999988641 12256666666654321 1 111211 11111111111 1111224
Q ss_pred CCCeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHH
Q 013831 343 TPRNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVK 389 (435)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~ 389 (435)
.+..++.+.++.....|....+.....+ ...+|+++++ +++++|+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~ 124 (179)
T 2pez_A 76 AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK 124 (179)
T ss_dssp TTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTT
T ss_pred CCCEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhh
Confidence 6666666666555444554333333333 4567888886 888888654
No 63
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.47 E-value=2.7e-07 Score=82.59 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=29.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCc--cEEEeccHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGTNLIL 304 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~--~~~~ls~D~ir 304 (435)
+.+|+++|+|||||||+|+.|++.++.. .+..++.|++.
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~ 41 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence 3589999999999999999999876521 25667766543
No 64
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.45 E-value=4.2e-07 Score=82.39 Aligned_cols=127 Identities=17% Similarity=0.282 Sum_probs=68.1
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc--cCCCC--hHHHHHHHHHHH------------
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL--RKHNY--SERFQCLMGRAN------------ 330 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~--~~~~~--~~~~~~~~~~~~------------ 330 (435)
++|+++|++||||||++++|.+.++..-...++... +..+ .|.. .+|.| ...++..++.-.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TT--R~pR-~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~Y 78 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTT--RTPR-AGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYY 78 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEEC--SCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEec--cCCC-CCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCcee
Confidence 468999999999999999999887642112232211 1111 1211 12222 122332221100
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhc-CC-c-EEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHH
Q 013831 331 AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVN-FR-K-IAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNM 406 (435)
Q Consensus 331 ~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~-~-~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m 406 (435)
......++..+.+|++||+|-. + . -.+.++. +. . +.+++++++ +++.+|+..| +..-.+++-.+|
T Consensus 79 Gt~~~~v~~~l~~g~~vil~id-~--~----g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~R----g~e~~e~i~~Rl 147 (186)
T 1ex7_A 79 GSTVASVKQVSKSGKTCILDID-M--Q----GVKSVKAIPELNARFLFIAPPSVEDLKKRLEGR----GTETEESINKRL 147 (186)
T ss_dssp EEEHHHHHHHHHHTSEEEEECC-H--H----HHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHH----CCSCHHHHHHHH
T ss_pred eeecceeeehhhCCCEEEecCC-H--H----HHHHHHHhcccCceEEEEeCCCHHHHHHHHHhc----CCCCHHHHHHHH
Confidence 0111244556688999999974 2 1 1223333 22 3 334444554 8999999999 555455555555
Q ss_pred H
Q 013831 407 L 407 (435)
Q Consensus 407 ~ 407 (435)
.
T Consensus 148 ~ 148 (186)
T 1ex7_A 148 S 148 (186)
T ss_dssp H
T ss_pred H
Confidence 4
No 65
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.45 E-value=2.2e-07 Score=81.64 Aligned_cols=105 Identities=15% Similarity=0.137 Sum_probs=59.3
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc-cCC--CChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL-RKH--NYSERFQCLMGRANAIFDVLLSRASRTP 344 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~-~~~--~~~~~~~~~~~~~~~~~~~ll~~al~~g 344 (435)
.|+++|+|||||||+|+.|++.++ +.+++.|.+...+ .|.. ++. .+.. . ..... ...++. .+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~---~~~i~~d~~~~~~--~g~~~~~~~~~~~~--~-~~~~~---~~~~l~-~l~~~ 69 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN---IPFYDVDEEVQKR--EGLSIPQIFEKKGE--A-YFRKL---EFEVLK-DLSEK 69 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT---CCEEEHHHHHHHH--HTSCHHHHHHHSCH--H-HHHHH---HHHHHH-HHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CCEEECcHHHHHH--cCCCHHHHHHHhCh--H-HHHHH---HHHHHH-HHhcc
Confidence 588999999999999999999876 5678888876553 1310 000 0011 1 11111 112222 23334
Q ss_pred CeEEEeC---CCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 013831 345 RNFIIDQ---TNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 345 ~~vIlD~---Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R 390 (435)
..+||+. ..+.+..+. .+... -.+|++++| +++++|+.+|
T Consensus 70 ~~~Vi~~g~~~~~~~~~~~----~l~~~--~~~i~l~~~~e~~~~R~~~r 113 (168)
T 2pt5_A 70 ENVVISTGGGLGANEEALN----FMKSR--GTTVFIDIPFEVFLERCKDS 113 (168)
T ss_dssp SSEEEECCHHHHTCHHHHH----HHHTT--SEEEEEECCHHHHHHHCBCT
T ss_pred CCeEEECCCCEeCCHHHHH----HHHcC--CEEEEEECCHHHHHHHHhCC
Confidence 4555552 223443333 23322 356788876 8999998876
No 66
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.44 E-value=4.8e-06 Score=74.52 Aligned_cols=136 Identities=15% Similarity=0.149 Sum_probs=75.2
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP 344 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g 344 (435)
..++++++|+|||||||+++.++... ....+.++.|.++.... .+....+....... ...+...+..........+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~-~~g~i~i~~d~~~~~~~-~~~~~~~~~~~~~~--~~~v~~~l~~~~~~~~~~~ 83 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP-GVPKVHFHSDDLWGYIK-HGRIDPWLPQSHQQ--NRMIMQIAADVAGRYAKEG 83 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS-SSCEEEECTTHHHHTCC-SSCCCTTSSSHHHH--HHHHHHHHHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc-CCCeEEEcccchhhhhh-cccccCCccchhhh--hHHHHHHHHHHHHHHhccC
Confidence 35899999999999999999999874 34467888888765321 11111111111111 1111112222222234567
Q ss_pred CeEEEeCCCcCHHHHHHHHHHHhcCC-cEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHHHHhccc
Q 013831 345 RNFIIDQTNVFKSARKRKLRLFVNFR-KIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNNMLANYV 411 (435)
Q Consensus 345 ~~vIlD~Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~m~~~fe 411 (435)
..+++|...- ... +..+.... ...++++..+ +++++|...|... -....+.+..+.+.+.
T Consensus 84 ~~~~~~~~~~-~~~----l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~--~lld~~~~~~~~~~~~ 145 (191)
T 1zp6_A 84 YFVILDGVVR-PDW----LPAFTALARPLHYIVLRTTAAEAIERCLDRGGD--SLSDPLVVADLHSQFA 145 (191)
T ss_dssp CEEEECSCCC-TTT----THHHHTTCSCEEEEEEECCHHHHHHHHHTTCTT--SCCCHHHHHHHHHHTT
T ss_pred CeEEEeccCc-HHH----HHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCC--ccCCHHHHHHHHHHHh
Confidence 8899998532 111 22233212 4566777766 8899999888321 1124556666655553
No 67
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.44 E-value=6.8e-07 Score=82.56 Aligned_cols=39 Identities=28% Similarity=0.273 Sum_probs=32.9
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~ 306 (435)
.+.+|+++|+|||||||+++.|++.++ +..++.|++.++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~---~~~i~~d~~~~~ 42 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ---LAHISAGDLLRA 42 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC---CEECCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC---CceecHHHHHHH
Confidence 356899999999999999999999887 678888876543
No 68
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.43 E-value=5.4e-07 Score=80.96 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=62.1
Q ss_pred cceEEEEEccCCCChhHHHHHHHhh-CCCccEEEeccHHHHHHhccCCCccC---CCChHHHHHHHHHHHHHHHHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKD-HPEKRYILLGTNLILEQMKVPGLLRK---HNYSERFQCLMGRANAIFDVLLSRA 340 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~-~~~~~~~~ls~D~ir~~~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~ll~~a 340 (435)
.+.+|+++|.|||||||+++.+++. ++ +..++.|.+.++..+.....+ ..+..+ ...+.... .++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g---~~~id~d~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~----~l~~~ 79 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDG---FQHLEVGKLVKENHFYTEYDTELDTHIIEE--KDEDRLLD----FMEPI 79 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTT---EEEEEHHHHHHHTTCSCC------CCCCCH--HHHHHHHH----HHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC---CEEeeHHHHHHHhhhhhhHHHHhhhcccCC--CCHHHHHH----HHHHH
Confidence 3578999999999999999999998 55 788999987665322111100 001100 00011111 12222
Q ss_pred hcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 013831 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R 390 (435)
+..+..+|+|..+.. + +.....-.+|+++++ +++.+|+.+|
T Consensus 80 ~~~~g~~vi~~~~~~------~---~~~~~~~~vi~l~~~~e~~~~Rl~~R 121 (184)
T 1y63_A 80 MVSRGNHVVDYHSSE------L---FPERWFHMVVVLHTSTEVLFERLTKR 121 (184)
T ss_dssp HTSSSEEEEECSCCT------T---SCGGGCSEEEEEECCHHHHHHHHHHT
T ss_pred HhccCCEEEeCchHh------h---hhhccCCEEEEEECCHHHHHHHHHhC
Confidence 323346778865431 1 111111257788887 8999999998
No 69
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.42 E-value=3.1e-07 Score=82.12 Aligned_cols=38 Identities=37% Similarity=0.490 Sum_probs=32.6
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
.+|+|+|+|||||||+|+.|++.++ +.+++.|.+++++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg---~~~id~D~~~~~~ 40 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG---VGLLDTDVAIEQR 40 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC---CCEEeCchHHHHH
Confidence 3589999999999999999999876 6678899987664
No 70
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.38 E-value=2.6e-07 Score=82.41 Aligned_cols=105 Identities=15% Similarity=0.099 Sum_probs=60.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChH--HHHHHHHHHHHHHHHHHHHHhc
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSE--RFQCLMGRANAIFDVLLSRASR 342 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~--~~~~~~~~~~~~~~~ll~~al~ 342 (435)
...+|+++|+|||||||+++.+++.++ +..++.|.+..+...........+.. ..+.+.+. +...+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 78 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG---LKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDE--------LDNQMR 78 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHH--------HHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC---CeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHH--------HHHHHh
Confidence 356789999999999999999999876 56778888766543211111111111 01112221 122233
Q ss_pred CCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 013831 343 TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 343 ~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R 390 (435)
.|. +|+|.-+.. . +.....-.+|+++++ +++++|+..|
T Consensus 79 ~g~-~vv~~~~~~------~---~~~~~~~~vi~L~~~~e~l~~R~~~r 117 (180)
T 3iij_A 79 EGG-VIVDYHGCD------F---FPERWFHIVFVLRTDTNVLYERLETR 117 (180)
T ss_dssp HCC-EEEECSCCT------T---SCGGGCSEEEEEECCHHHHHHHHHHT
T ss_pred cCC-EEEEechhh------h---cchhcCCEEEEEECCHHHHHHHHHHc
Confidence 454 455654321 0 111012367788886 8999999988
No 71
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.38 E-value=3.2e-07 Score=82.01 Aligned_cols=41 Identities=17% Similarity=0.343 Sum_probs=30.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCcc--EEEeccHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKR--YILLGTNLILEQ 306 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~--~~~ls~D~ir~~ 306 (435)
..+|+++|+|||||||+++.|++.++... +..++.|++.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~ 45 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFE 45 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHH
Confidence 35899999999999999999998765222 456776665433
No 72
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.36 E-value=8.4e-07 Score=78.73 Aligned_cols=39 Identities=28% Similarity=0.537 Sum_probs=32.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
+..|+++|+|||||||+|+.+++.++ +..++.|.++++.
T Consensus 4 m~~i~i~G~~GsGKsTla~~La~~l~---~~~~d~d~~~~~~ 42 (175)
T 1via_A 4 AKNIVFIGFMGSGKSTLARALAKDLD---LVFLDSDFLIEQK 42 (175)
T ss_dssp -CCEEEECCTTSCHHHHHHHHHHHHT---CEEEEHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC---CCEEcccHHHHHH
Confidence 34688999999999999999999887 6788899876653
No 73
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.35 E-value=1.9e-06 Score=78.58 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+.+|+++|+|||||||+++.|++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999998643
No 74
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.29 E-value=7.6e-06 Score=75.64 Aligned_cols=140 Identities=18% Similarity=0.098 Sum_probs=72.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc---------HHHHHHhccCCCccCCCChHHHHH-HH--HHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT---------NLILEQMKVPGLLRKHNYSERFQC-LM--GRANAIF 333 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~---------D~ir~~~~~~G~~~~~~~~~~~~~-~~--~~~~~~~ 333 (435)
..+|++.|++||||||.++.+++.+....+.++.+ ..+++-+ ..+.. ....+.-+. +. .++ +.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l-~~~~~--~~~~~~~~~llf~a~R~-~~~ 81 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELL-LAPSD--EPMAADTELLLMFAARA-QHL 81 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHH-HSCCS--SCCCHHHHHHHHHHHHH-HHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHH-hcCCC--CCCCHHHHHHHHHHHHH-HHH
Confidence 57899999999999999999987764322211211 1233322 12210 011121111 11 111 123
Q ss_pred HHHHHHHhcCCCeEEEeCC------------CcCHHHHHHHHHHHh-cC-CcEEEEEECCh-HHHHHHHHHhhhhcCC-C
Q 013831 334 DVLLSRASRTPRNFIIDQT------------NVFKSARKRKLRLFV-NF-RKIAVVVFPKP-EDLKIRSVKRFKEMGK-E 397 (435)
Q Consensus 334 ~~ll~~al~~g~~vIlD~T------------n~~~~~R~~~~~~~~-~~-~~~~vv~l~~~-ee~~~R~~~R~~~~~~-~ 397 (435)
...+.-++.+|..||.|-- .+..+.-.+ +..+. .. ..-.+++|+++ +++++|..+|...... .
T Consensus 82 ~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~-l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr~E~ 160 (213)
T 4edh_A 82 AGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAA-LESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQ 160 (213)
T ss_dssp HHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHH-HHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCTTTT
T ss_pred HHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHH-HHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCcccc
Confidence 4556677889999999952 122221111 12222 11 24467788886 8999999888321111 1
Q ss_pred CcHHHHHHHHhcc
Q 013831 398 VPADAVNNMLANY 410 (435)
Q Consensus 398 vp~~vi~~m~~~f 410 (435)
-+.+.+++..+.|
T Consensus 161 ~~~~~~~rv~~~y 173 (213)
T 4edh_A 161 EDRRFFEAVRQTY 173 (213)
T ss_dssp SCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 1345555555444
No 75
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.28 E-value=6e-06 Score=77.13 Aligned_cols=111 Identities=15% Similarity=0.169 Sum_probs=62.6
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH-hccCCCccCCCChHHHHHHHHH----HHHHHHHHHHHHhc-
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ-MKVPGLLRKHNYSERFQCLMGR----ANAIFDVLLSRASR- 342 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~-~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~ll~~al~- 342 (435)
+-+.|+|||||||.|+.+++.+. +.+||++++.++ +. .+.. .......+++. -...+..++...+.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g---~~~is~gdllR~~~~-~~t~----lG~~i~~~~~~G~lvpdei~~~ll~~~l~~ 82 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFG---IPQISTGDMLRAAVK-AGTP----LGVEAKTYMDEGKLVPDSLIIGLVKERLKE 82 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT---CCEECHHHHHHHHHH-TTCH----HHHHHHHHHTTTCCCCHHHHHHHHHHHHHS
T ss_pred eeeECCCCCCHHHHHHHHHHHhC---CCeeechHHHHHhcc-CCCh----HHHHHHHHHhhccccccHHHHHHHHHHHhC
Confidence 46789999999999999999886 678898765443 21 1210 00000000000 00011122222222
Q ss_pred --CCCeEEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECCh-HHHHHHHHHhh
Q 013831 343 --TPRNFIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 343 --~g~~vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
....+|||.---+..+ . +.+.... .-.+|+|++| +++.+|+..|.
T Consensus 83 ~~~~~g~ILDGfPRt~~Q-a---~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~ 132 (230)
T 3gmt_A 83 ADCANGYLFDGFPRTIAQ-A---DAMKEAGVAIDYVLEIDVPFSEIIERMSGRR 132 (230)
T ss_dssp GGGTTCEEEESCCCSHHH-H---HHHHHTTCCCSEEEEECCCHHHHHHHHHTEE
T ss_pred cccCCCeEecCCCCcHHH-H---HHHHHhCCCccEEEEEeCCHHHHHHHHHcCC
Confidence 2457999984334322 2 2233332 3467899987 89999999984
No 76
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.26 E-value=3.3e-06 Score=74.33 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=32.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
..+|+++|+|||||||+++.++..++ +..++.|.+..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~---~~~id~d~~~~~~ 42 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN---MEFYDSDQEIEKR 42 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT---CEEEEHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC---CCEEeccHHHHHH
Confidence 46799999999999999999999876 5778888876543
No 77
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=98.26 E-value=4.5e-06 Score=88.84 Aligned_cols=122 Identities=17% Similarity=0.236 Sum_probs=81.3
Q ss_pred CeEEeCcCCCCCCeEEcCCCceEeecC----------------CCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCC
Q 013831 42 QRVVLNPADCDLDFDIEDNGLKSSGLH----------------QEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDME 105 (435)
Q Consensus 42 ~~v~l~~~d~~~~l~is~d~l~~~~~~----------------~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~ 105 (435)
-.|+|||.... +|.||+|+.+|+... ...|.. +.+|.+.-++.+|++||||.|..
T Consensus 410 v~vtldp~ta~-~l~~s~d~r~v~~~~~~~~~~~p~~~~~~~~~~rF~~-~~~VLg~~~f~sGrhyWEV~v~~------- 480 (602)
T 4b3n_A 410 VDVTLATNNIS-HAVIAEDKRQVSSRNPQIMYQAPGTLFTFPSLTNFNY-CTGVLGSQSITSGKHYWEVDVSK------- 480 (602)
T ss_dssp CCCCEECCSCC-SCEECTTSSEEECCCC--------------------C-CCCEEESSCBSSSEEEEEEECTT-------
T ss_pred EEEEeCCCCCC-ceeEecCCCEEEECCccccccCCCccCCCCCcccCCC-CCEeccCCCCCCEEEEEEEEECC-------
Confidence 45899999877 699999999987432 123333 56799999999999999999863
Q ss_pred CCCCCCCCcEEEEEecCCCC--------CCCCCCCCcceEEe-cCCceE---eCCCc-ccCCCC---CC---CCCEEEEE
Q 013831 106 DTPPDQQHVCRVGTSRGDDP--------VGKLGETEQSFGFG-GTGKFS---HGGNF-LNFGEK---FG---VGDTIICA 166 (435)
Q Consensus 106 ~~~~~~~~~~rvG~s~~~~~--------~~~lG~d~~S~gy~-~~G~~~---~~~~~-~~yg~~---f~---~gDvIGc~ 166 (435)
...+.||++..... ...++.+..+|+.+ .+|..+ |+... ....+. .. .=..||++
T Consensus 481 ------~~~w~~Gv~~~~~~~~~~~~~~~~~~~~~~g~w~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~rvgv~ 554 (602)
T 4b3n_A 481 ------KSAWILGVCAGFQSDAMYNIEQNENYQPKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVF 554 (602)
T ss_dssp ------CSCEEEEEECCCCTTTSSTHHHHCCCCGGGTEEEEEEETTTEEEEEECCCSSCCSSCEEEECCCSSCCSEEEEE
T ss_pred ------CeeEEEEEeeccccccccccCCCcccCCCCcEEEEEEecCCeEEEEeCCCcccccCCcccccccCCCCCEEEEE
Confidence 46789999863211 23456666789875 455432 33322 122211 11 22589999
Q ss_pred EecCCCCceeEEEEe
Q 013831 167 IDLESKPLATIGFAK 181 (435)
Q Consensus 167 ld~~~~p~~~i~ft~ 181 (435)
||++. +.|+|+.
T Consensus 555 ld~~~---g~~sFy~ 566 (602)
T 4b3n_A 555 VDYEA---CTVSFFN 566 (602)
T ss_dssp EETTT---TEEEEEE
T ss_pred EecCC---CEEEEEe
Confidence 99998 8999984
No 78
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.25 E-value=1.2e-06 Score=79.87 Aligned_cols=139 Identities=14% Similarity=0.047 Sum_probs=68.7
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCc--cEEEecc--------HHHHHHhccCCCccCCCChHH-HHHHHHHHH-HH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK--RYILLGT--------NLILEQMKVPGLLRKHNYSER-FQCLMGRAN-AI 332 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~--~~~~ls~--------D~ir~~~~~~G~~~~~~~~~~-~~~~~~~~~-~~ 332 (435)
.+.+|+++|+|||||||+++.|++.++.. ....+.. +.+++.+. .+ ..+.+. ...+..... ..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~-~~----~~~~~~~~~~~~~~~~~~~ 83 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLK-ME----NSMSNETIHLLFSANRWEH 83 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHT-TS----SCCCHHHHHHHHHHHHHTT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHh-cC----CCCCHHHHHHHHHHHHHHH
Confidence 35789999999999999999999865311 1211110 11222221 11 011111 111111000 11
Q ss_pred HHHHHHHHhcCCCeEEEeCCCcCH----HHH----HHHHHHHhc-C-CcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHH
Q 013831 333 FDVLLSRASRTPRNFIIDQTNVFK----SAR----KRKLRLFVN-F-RKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPAD 401 (435)
Q Consensus 333 ~~~ll~~al~~g~~vIlD~Tn~~~----~~R----~~~~~~~~~-~-~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~ 401 (435)
+ ..+..++..+..||+|....+. ..+ ..++..+.. . ..-.+|+|.+| +++++|+..|. .+.-.++
T Consensus 84 ~-~~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~---~r~~~~~ 159 (212)
T 2wwf_A 84 M-NEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGE---EIYEKVE 159 (212)
T ss_dssp H-HHHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTS---STTCSHH
T ss_pred H-HHHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCc---ccccHHH
Confidence 1 1334445678899999864321 111 122222222 1 13356788776 88888876541 1112355
Q ss_pred HHHHHHhcccC
Q 013831 402 AVNNMLANYVL 412 (435)
Q Consensus 402 vi~~m~~~fe~ 412 (435)
...++.+.++.
T Consensus 160 ~~~~~~~~~~~ 170 (212)
T 2wwf_A 160 TQKKIYETYKH 170 (212)
T ss_dssp HHHHHHHHGGG
T ss_pred HHHHHHHHHHH
Confidence 56666555543
No 79
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.23 E-value=1.4e-06 Score=79.96 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=24.5
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..++|+++|++||||||+++.|+..++
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 367999999999999999999998875
No 80
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.22 E-value=2e-06 Score=75.61 Aligned_cols=40 Identities=20% Similarity=0.373 Sum_probs=32.8
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
.+..|+++|.|||||||+|+.|++.++ +..+++|.+..++
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg---~~~id~D~~~~~~ 45 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK---LEVLDTDMIISER 45 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC---CCEEEChHHHHHH
Confidence 578999999999999999999999876 5678888876653
No 81
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.21 E-value=6.1e-06 Score=76.60 Aligned_cols=138 Identities=12% Similarity=0.212 Sum_probs=76.2
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEeccHHHHHHhccCCCcc--CCCCh--HHHHHHHH------HH---
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPGLLR--KHNYS--ERFQCLMG------RA--- 329 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D~ir~~~~~~G~~~--~~~~~--~~~~~~~~------~~--- 329 (435)
+..++++++|++||||||+.+.++...+. .-...++.+. +..+ .+... .+.+. ..+..... .+
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~tt--r~~~-~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTT--RQPR-PGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEEC--SCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecC--CCCC-cccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 34689999999999999999999987752 1011111110 0000 01000 11111 11211111 00
Q ss_pred H---HHHHHHHHHHhcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHhhhhcCCCCcHHHHHH
Q 013831 330 N---AIFDVLLSRASRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKRFKEMGKEVPADAVNN 405 (435)
Q Consensus 330 ~---~~~~~ll~~al~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R~~~~~~~vp~~vi~~ 405 (435)
. ..-...++.+++.|+.+|+| +++..+..+++.+. ..+.+++++.+ +++.+|+..| +..-++++..+
T Consensus 91 ~~~yg~~~~~v~~~l~~G~illLD---LD~~~~~~i~~~l~--~~~tI~i~th~~~~l~~Rl~~r----G~~~~e~i~~r 161 (219)
T 1s96_A 91 GNYYGTSREAIEQVLATGVDVFLD---IDWQGAQQIRQKMP--HARSIFILPPSKIELDRRLRGR----GQDSEEVIAKR 161 (219)
T ss_dssp TEEEEEEHHHHHHHHTTTCEEEEE---CCHHHHHHHHHHCT--TCEEEEEECSSHHHHHHHHHTT----SCSCHHHHHHH
T ss_pred hccCCCCHHHHHHHHhcCCeEEEE---ECHHHHHHHHHHcc--CCEEEEEECCCHHHHHHHHHHc----CCCCHHHHHHH
Confidence 0 00012355667889999999 88888887666555 24666666554 8888888666 55555666666
Q ss_pred HHh-cccCC
Q 013831 406 MLA-NYVLP 413 (435)
Q Consensus 406 m~~-~fe~P 413 (435)
+.. ..+++
T Consensus 162 l~~a~~e~~ 170 (219)
T 1s96_A 162 MAQAVAEMS 170 (219)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 643 24443
No 82
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.20 E-value=1e-05 Score=72.97 Aligned_cols=37 Identities=22% Similarity=0.159 Sum_probs=31.5
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE 305 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~ 305 (435)
.+.+|.++|.|||||||+++.|++. + +.+++.|.+.+
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g---~~~id~d~~~~ 43 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-G---YPVLDLDALAA 43 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-T---CCEEEHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-C---CEEEcccHHHH
Confidence 4678999999999999999999987 3 67888887643
No 83
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.20 E-value=1.4e-05 Score=76.87 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=32.1
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~ 306 (435)
+.+.+|.++|.|||||||+|+.|++ ++ +.+|++|.+.++
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~-lg---~~~id~D~~~~~ 111 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN-LG---AYIIDSDHLGHR 111 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH-HT---CEEEEHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CC---CcEEehhHHHHH
Confidence 4578999999999999999999994 44 678888887443
No 84
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=5.5e-05 Score=67.22 Aligned_cols=143 Identities=15% Similarity=0.214 Sum_probs=97.6
Q ss_pred CCCCCeEEcCCCceEeecC-CCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCC----
Q 013831 50 DCDLDFDIEDNGLKSSGLH-QEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDD---- 124 (435)
Q Consensus 50 d~~~~l~is~d~l~~~~~~-~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s~~~~---- 124 (435)
-+..++.|++|+.++.... .. ..+-+-|-++.++..|. .|+|+|.+... .=.|.+++|+++.+-
T Consensus 12 ~hG~nI~L~~~~~~A~R~~~~~--~f~~givFS~rPl~~~E-~~~v~I~~~~~--------~wsG~l~~GvT~~dP~~l~ 80 (170)
T 2e63_A 12 RTGRLVSLSACGRTARRQQPGQ--EFNHGLVLSREPLRDGR-VFTVRIDRKVN--------SWSGSIEIGVTALDPSVLD 80 (170)
T ss_dssp CCCSSEEECSSSCEEEESCTTT--CSCSCCEEEEEEECTTC-EEEEEEEEECC--------SSCCCCEEEEESSCTTSCC
T ss_pred ccCCCeEECCCCeEEEeCCCCc--ccCceEEEECCCCCCCC-EEEEEEEeecC--------CcceeEEEEEEccChhhcc
Confidence 4788999999999887642 12 23446688889999775 46777775421 125899999998541
Q ss_pred -CCCCCCCCCcceEEecCCceEeCCC--cccCCC---CCCCCCEEEEEEecCCCCceeEEEEeCccceeecccccCCCCC
Q 013831 125 -PVGKLGETEQSFGFGGTGKFSHGGN--FLNFGE---KFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNG 198 (435)
Q Consensus 125 -~~~~lG~d~~S~gy~~~G~~~~~~~--~~~yg~---~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~lg~af~~~~~~~~ 198 (435)
+.....-...+|.+.+.+-. ++++ .+.||. +...||+||..++-. +.++|..||+.+|+++. ..
T Consensus 81 lP~~~~~L~~~~Wv~~~~~v~-~ng~~~~e~~~~~l~~l~~Gd~ig~~~~~~----G~l~~~iNg~~~g~~~~-~i---- 150 (170)
T 2e63_A 81 FPSSATGLKGGSWVVSGCSVL-RDGRSVLEEYGQDLDQLGEGDRVGVERTVA----GELRLWVNGRDCGVAAT-GL---- 150 (170)
T ss_dssp CCSSGGGCCSSEEEESSSEEE-ESSCEEEESCSSCGGGCCSSCCEEEEECTT----SCEEEEESSCEEEEEEC-CC----
T ss_pred CCCChhhCCCCeEEEeccccc-cCCcccchhccccccccCCCCEEEEEEcCC----cEEEEEECCccceeeEc-CC----
Confidence 11122223467988653222 2222 357886 567999999999854 59999999999999975 11
Q ss_pred ccccccccccccCCCceeeEEEEcCeEE
Q 013831 199 LGVVDSAVKERQCESAVFPHILLKNVVV 226 (435)
Q Consensus 199 l~~~~~~~~g~~~~~~lfP~v~l~~~~v 226 (435)
..+||..|-+++...
T Consensus 151 -------------p~~LwavvDvyG~t~ 165 (170)
T 2e63_A 151 -------------PPRVWAVVDLYGKCT 165 (170)
T ss_dssp -------------CSCEEEEEECCTTEE
T ss_pred -------------CCcEEEEEEccCCEE
Confidence 357888888885443
No 85
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.18 E-value=4.3e-06 Score=75.63 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=23.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+++.++..++
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999998876
No 86
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.16 E-value=1.8e-05 Score=74.33 Aligned_cols=142 Identities=11% Similarity=0.048 Sum_probs=69.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccE--EEecc--------HHHHHHhccCCCccCCCChHHHHHH-HH-HHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRY--ILLGT--------NLILEQMKVPGLLRKHNYSERFQCL-MG-RANAIF 333 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~--~~ls~--------D~ir~~~~~~G~~~~~~~~~~~~~~-~~-~~~~~~ 333 (435)
..+|++.|++||||||.++.+++.+....+ +.+.. ..+++.+. .+. ......+.-+.+ .- .-.+.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~-~~~-~~~~~~~~~e~lLf~A~R~~~~ 104 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVK-EEH-PGEELQDITELLLVYAARVQLV 104 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHH-SCC-TTSCCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHh-hCC-CcccCCHHHHHHHHHHHHHHHH
Confidence 579999999999999999999876542211 12211 23333321 110 001122211211 11 111233
Q ss_pred HHHHHHHhcCCCeEEEeCC------------CcCHHHHHHHHHHHh-cC-CcEEEEEECCh-HHHHHHHHHhhhhcC-CC
Q 013831 334 DVLLSRASRTPRNFIIDQT------------NVFKSARKRKLRLFV-NF-RKIAVVVFPKP-EDLKIRSVKRFKEMG-KE 397 (435)
Q Consensus 334 ~~ll~~al~~g~~vIlD~T------------n~~~~~R~~~~~~~~-~~-~~~~vv~l~~~-ee~~~R~~~R~~~~~-~~ 397 (435)
...+.-++++|..||.|-- .+..+.-.+ +..+. .. ..-.+++|++| +++++|+.+|..... ..
T Consensus 105 ~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~-l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~E~ 183 (236)
T 3lv8_A 105 ENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQS-LKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRIEK 183 (236)
T ss_dssp HHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHH-HHHHHHTTCCCSEEEEEECCHHHHHHC-----CCCTTTT
T ss_pred HHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHH-HHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhh
Confidence 4456677899999999942 122221111 22222 11 23456788876 899999988842111 11
Q ss_pred CcHHHHHHHHhcc
Q 013831 398 VPADAVNNMLANY 410 (435)
Q Consensus 398 vp~~vi~~m~~~f 410 (435)
-+.+.+++..+.|
T Consensus 184 ~~~~~~~rv~~~y 196 (236)
T 3lv8_A 184 MDISFFERARERY 196 (236)
T ss_dssp SCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 1345555555544
No 87
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.15 E-value=2.9e-06 Score=76.20 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=22.5
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+++.++|++||||||+++.++..++
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999997765
No 88
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.11 E-value=1.7e-05 Score=83.53 Aligned_cols=115 Identities=15% Similarity=0.185 Sum_probs=62.9
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCC-c--cEEEeccHHHHHHhccCCCccCCCChHH-HHHHHHHHHHHHHHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-K--RYILLGTNLILEQMKVPGLLRKHNYSER-FQCLMGRANAIFDVLLSRA 340 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~-~--~~~~ls~D~ir~~~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~ll~~a 340 (435)
..++|+++|++||||||+++.++..+.. . .+..+..|.++..+. +. ..|... .......... ++...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~--~~---l~f~~~~r~~~~r~i~~----v~q~l 438 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLS--SE---LGFSKAHRDVNVRRIGF----VASEI 438 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTT--SS---CCCSHHHHHHHHHHHHH----HHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhc--cc---cCCCHHHHHHHHHHHHH----HHHHH
Confidence 4689999999999999999999987631 1 244688888876542 11 123221 1111111111 22222
Q ss_pred hcCCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHH
Q 013831 341 SRTPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSV 388 (435)
Q Consensus 341 l~~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~ 388 (435)
...+..+|..........|....+.+...+.+.+|+++++ +++.+|..
T Consensus 439 ~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~ 487 (552)
T 3cr8_A 439 TKNRGIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDR 487 (552)
T ss_dssp HHTTCEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC----------
T ss_pred HhcCCEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhcc
Confidence 3456666665544345666655555655556778899998 89988864
No 89
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.09 E-value=1.7e-05 Score=71.45 Aligned_cols=24 Identities=21% Similarity=0.273 Sum_probs=22.5
Q ss_pred EEEEEccCCCChhHHHHHHHhhCC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+|+++|+|||||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999876
No 90
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.09 E-value=1.6e-05 Score=78.40 Aligned_cols=35 Identities=11% Similarity=0.372 Sum_probs=31.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
..+|+++|++||||||+|..|++.++ ..+||.|.+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~---~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP---LEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC---EEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC---CcEEccccc
Confidence 46999999999999999999999997 678888864
No 91
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.06 E-value=2.3e-05 Score=71.10 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=30.0
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~ 306 (435)
.+|.++|+|||||||+++.++. ++ +..+++|.+.++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg---~~~id~d~~~~~ 38 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LG---VPLVDADVVARE 38 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TT---CCEEEHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CC---CcccchHHHHHH
Confidence 5789999999999999999987 54 567888887554
No 92
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.06 E-value=1.5e-05 Score=75.07 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=31.9
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCc-------cEEEeccHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK-------RYILLGTNLIL 304 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~-------~~~~ls~D~ir 304 (435)
.+.+|.++|.|||||||+|+.|++.++.. .+.+++.|.+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 46789999999999999999999876521 24578888764
No 93
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.05 E-value=5.1e-05 Score=69.49 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=31.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~ 306 (435)
+.+|.++|.+||||||+++.+++ ++ +.++++|.+.++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg---~~~id~D~~~~~ 40 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LG---INVIDADIIARQ 40 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TT---CEEEEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cC---CEEEEccHHHHH
Confidence 46899999999999999999987 54 677888877554
No 94
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.03 E-value=1.6e-05 Score=71.93 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=30.6
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~ 306 (435)
.+|.++|.|||||||+++.++. ++ +.+++.|.+.++
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g---~~~i~~d~~~~~ 37 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LG---AYVLDADKLIHS 37 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TT---CEEEEHHHHHHG
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CC---CEEEEccHHHHH
Confidence 4789999999999999999998 65 678888887554
No 95
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.03 E-value=8.4e-05 Score=68.57 Aligned_cols=126 Identities=14% Similarity=0.089 Sum_probs=65.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccE--EEecc--------HHHHHHhccCCCccCCCChHHHHHHHHHHH--HHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRY--ILLGT--------NLILEQMKVPGLLRKHNYSERFQCLMGRAN--AIF 333 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~--~~ls~--------D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~--~~~ 333 (435)
..+|++.|++||||||.++.+.+.+....+ +++.. ..|++-+.-..........+.-+.+.-.|. +.+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~ 82 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLV 82 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHH
Confidence 468999999999999999999876542222 12211 123333210000000112222121111111 233
Q ss_pred HHHHHHHhcCCCeEEEeCCCcCHH-HH-------HHHHHHHhc----C-CcEEEEEECCh-HHHHHHHHHhh
Q 013831 334 DVLLSRASRTPRNFIIDQTNVFKS-AR-------KRKLRLFVN----F-RKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 334 ~~ll~~al~~g~~vIlD~Tn~~~~-~R-------~~~~~~~~~----~-~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
...+.-++++|..||.|--..+.- ++ ..++..+.. . ..-.+++++.+ +++++|..+|.
T Consensus 83 ~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~ 154 (213)
T 4tmk_A 83 ETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARG 154 (213)
T ss_dssp HHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 445667789999999995111100 00 112322221 1 23456788876 89999999983
No 96
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.97 E-value=6.5e-06 Score=78.09 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=27.6
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls 299 (435)
..+.+|++.|++||||||+++.|++.+.+ +.++.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~--~~~i~ 55 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCED--WEVVP 55 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTT--EEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCC--CEEEe
Confidence 34689999999999999999999999854 44453
No 97
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.96 E-value=1.1e-05 Score=75.43 Aligned_cols=120 Identities=15% Similarity=0.144 Sum_probs=61.5
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCc------cEEEec----c---HHHHHHhccCCCccCCCChHHHHHHHHHHH-
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEK------RYILLG----T---NLILEQMKVPGLLRKHNYSERFQCLMGRAN- 330 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~------~~~~ls----~---D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~- 330 (435)
...+|++.|++||||||.++.+++.+... .++.+. + ..+++.+ ..+. ..+.-+.+.-.+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l-~~~~-----~~~~~~~llf~a~R 97 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREIL-LNQP-----MDLETEALLMFAGR 97 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHH-HHSC-----CCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHH-HcCC-----CCHHHHHHHHHHHH
Confidence 45799999999999999999998876421 122221 0 1233322 1221 1111111111111
Q ss_pred -HHHHHHHHHHhcCCCeEEEeCC------------CcCHHHHHHHHHHHh-cC-CcEEEEEECCh-HHHHHHHHHhh
Q 013831 331 -AIFDVLLSRASRTPRNFIIDQT------------NVFKSARKRKLRLFV-NF-RKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 331 -~~~~~ll~~al~~g~~vIlD~T------------n~~~~~R~~~~~~~~-~~-~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
+.+...+.-++.+|..||+|-- .+..+.-.. +..+. +. ..-.+|+|+.+ +++++|..+|.
T Consensus 98 ~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~-l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~ 173 (227)
T 3v9p_A 98 REHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEA-LERWVQGGFQPDLTVLFDVPPQIASARRGAVR 173 (227)
T ss_dssp HHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHH-HHHHHHTTCCCSEEEEEECCSSCGGGTTTCCC
T ss_pred HHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHH-HHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 1234456677889999999942 122221111 11122 11 24456788876 88999998873
No 98
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.94 E-value=2.9e-06 Score=77.30 Aligned_cols=123 Identities=15% Similarity=0.059 Sum_probs=63.3
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccE--EEec---------cHHHHHHhccCCCccCCCChHHHHHHHHHHHH-HHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRY--ILLG---------TNLILEQMKVPGLLRKHNYSERFQCLMGRANA-IFDV 335 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~--~~ls---------~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~ 335 (435)
+|+++|+|||||||+++.|++.++...+ ..+. .|.++..+ .|........+.-..+...+.. ....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEAL--HGEHGDLASSVYAMATLFALDRAGAVH 79 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHE--EEEEEEEEEEHHHHHHHHHHHHHEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHH--cccccccCCCHhHHHHHHHHHHhhhHH
Confidence 7899999999999999999987652212 1111 23343322 1110000001111111111111 0022
Q ss_pred HHHHHhcCCCeEEEeCCCcCHHH-H------------HHHHHHHh----cC-CcEEEEEECCh-HHHHHHHHHhhh
Q 013831 336 LLSRASRTPRNFIIDQTNVFKSA-R------------KRKLRLFV----NF-RKIAVVVFPKP-EDLKIRSVKRFK 392 (435)
Q Consensus 336 ll~~al~~g~~vIlD~Tn~~~~~-R------------~~~~~~~~----~~-~~~~vv~l~~~-ee~~~R~~~R~~ 392 (435)
.+..++..|..||+|....+.-. + ..++..+. .. ..-.+++++++ +++++|+..|..
T Consensus 80 ~i~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~ 155 (214)
T 1gtv_A 80 TIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQ 155 (214)
T ss_dssp HHHHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccc
Confidence 34555678899999986543211 1 11233322 11 13346778776 899999999853
No 99
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.92 E-value=9.7e-05 Score=66.53 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=23.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+.+|+++|+|||||||+++.|++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 29 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIP 29 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHC
Confidence 46899999999999999999999874
No 100
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.91 E-value=0.00025 Score=64.86 Aligned_cols=120 Identities=16% Similarity=0.099 Sum_probs=62.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCc-cEEEec----c---HHHHHHhccCCCccCCCChHHHHHHHHHHH--HHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEK-RYILLG----T---NLILEQMKVPGLLRKHNYSERFQCLMGRAN--AIFDV 335 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~-~~~~ls----~---D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~--~~~~~ 335 (435)
.++|.+-|+.||||||.++.|.+.+... .++... + +.+++.+ ..+. ...+.-+.+.-.+. +.+..
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l-~~~~----~~~~~~~~lLf~a~R~~~~~~ 76 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIV-LEGN----DMDIRTEAMLFAASRREHLVL 76 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHH-HSSC----CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHH-hccc----CCCHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999998776421 122211 1 2333332 1221 11222111111111 12344
Q ss_pred HHHHHhcCCCeEEEeCCC------------cCHHHHHHHHHHHh-cC-CcEEEEEECCh-HHHHHHHHHhh
Q 013831 336 LLSRASRTPRNFIIDQTN------------VFKSARKRKLRLFV-NF-RKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 336 ll~~al~~g~~vIlD~Tn------------~~~~~R~~~~~~~~-~~-~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
.+.-++.+|..||.|--. +..+.-.. +..+. .. .+=.+++++.| +++++|..+|.
T Consensus 77 ~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~-l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~ 146 (205)
T 4hlc_A 77 KVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRA-LNEFAINGLYPDLTIYLNVSAEVGRERIIKNS 146 (205)
T ss_dssp THHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHH-HHHHHHTTCCCSEEEEEECCHHHHHHHHHC--
T ss_pred HHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHH-HHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcC
Confidence 566778999999999521 11111111 11111 11 22245688775 89999998874
No 101
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.90 E-value=0.00013 Score=67.18 Aligned_cols=39 Identities=28% Similarity=0.312 Sum_probs=32.6
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
.+-.|-++|.+||||||+++.+.+ ++ +.++++|.+.+++
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~-~g---~~vidaD~ia~~l 46 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA-RG---ASLVDTDLIAHRI 46 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH-TT---CEEEEHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH-CC---CcEEECcHHHHHH
Confidence 466789999999999999999987 65 7889999876543
No 102
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.89 E-value=3.7e-05 Score=69.75 Aligned_cols=39 Identities=18% Similarity=0.127 Sum_probs=32.8
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~ 306 (435)
.-.+|.++|.+||||||+++.+++.++ +.+++.|.+.++
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg---~~vid~D~~~~~ 49 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG---AHVVNVDRIGHE 49 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC---CEEEECcHHHHH
Confidence 457899999999999999999998865 678899987443
No 103
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.89 E-value=3.8e-05 Score=72.68 Aligned_cols=39 Identities=28% Similarity=0.436 Sum_probs=33.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM 307 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~ 307 (435)
.+.|+++|+|||||||+++.++..++ +..+++|.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg---~~~~d~d~~~~~~ 86 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG---YTFFDCDTLIEQA 86 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT---CEEEEHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC---CcEEeCcHHHHHH
Confidence 46789999999999999999999876 6778888876653
No 104
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.88 E-value=1.4e-05 Score=72.30 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
.++|+++|+|||||||+++.++..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5789999999999999999999877
No 105
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.75 E-value=0.0004 Score=63.05 Aligned_cols=118 Identities=13% Similarity=0.069 Sum_probs=57.5
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCc--cEEEec----c---HHHHHHhccCCCccCCCChHHHHH-HHHHHHHHHHHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEK--RYILLG----T---NLILEQMKVPGLLRKHNYSERFQC-LMGRANAIFDVLL 337 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~--~~~~ls----~---D~ir~~~~~~G~~~~~~~~~~~~~-~~~~~~~~~~~ll 337 (435)
+|++-|+.||||||.++.|++.+... .++... + ..+++.+. .. ...+.... +.......+...+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~-~~-----~~~~~~~~ll~~a~r~~~~~~I 75 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILL-EE-----EVTPKAELFLFLASRNLLVTEI 75 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHH-HS-----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhh-cc-----cCChHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999988765321 122221 1 12232221 11 11121111 1111122233456
Q ss_pred HHHhcCCCeEEEeCCCcCHHHH--------HHHHHHH---hc--CCcEEEEEECCh-HHHHHHHHHhh
Q 013831 338 SRASRTPRNFIIDQTNVFKSAR--------KRKLRLF---VN--FRKIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 338 ~~al~~g~~vIlD~Tn~~~~~R--------~~~~~~~---~~--~~~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
.-++..|..||.|--..+.-.. ..++..+ .. ..+-.+++++.| +++++|...|.
T Consensus 76 ~~~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~d 143 (197)
T 3hjn_A 76 KQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN 143 (197)
T ss_dssp HHHHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C
T ss_pred HHHHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcC
Confidence 6778999999999632211111 0112222 21 123345677765 88888866653
No 106
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.74 E-value=9.5e-05 Score=69.19 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=29.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir 304 (435)
+++|+++|+|||||||+++.+++.++ ...++.+.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg---~~~~~~G~i~ 62 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG---LQHLSSGHFL 62 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC---CCCEEHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC---CeEecHHHHH
Confidence 57999999999999999999998775 3445555553
No 107
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.73 E-value=0.0002 Score=65.31 Aligned_cols=112 Identities=11% Similarity=0.078 Sum_probs=59.0
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHh-ccCCCccCC--CChHHHH-HH-------------HHHH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQM-KVPGLLRKH--NYSERFQ-CL-------------MGRA 329 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~-~~~G~~~~~--~~~~~~~-~~-------------~~~~ 329 (435)
.+|.+.|++||||||+++.+++.++ +..++ +++.+.. ...|...+. .+.+... .. ....
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg---~~~~D-~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN---IPLYS-KELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDI 82 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT---CCEEC-HHHHHHTTCC---------------------------------CHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC---cCEEC-HHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHH
Confidence 5899999999999999999999987 56677 4443332 112221000 0011000 00 0001
Q ss_pred HHHHHHHHHHHhc-CCCeEEEeCCCcCHHHHHHHHHHHhcCCcEEEEEECCh-HHHHHHHHHh
Q 013831 330 NAIFDVLLSRASR-TPRNFIIDQTNVFKSARKRKLRLFVNFRKIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 330 ~~~~~~ll~~al~-~g~~vIlD~Tn~~~~~R~~~~~~~~~~~~~~vv~l~~~-ee~~~R~~~R 390 (435)
...+.+++...+. ...++|++.+-.. + .+........||+.++ +++.+|..+|
T Consensus 83 ~~~~~~~i~~la~~~~~~~Vi~Gr~g~------~--vl~~~~~~~~V~L~A~~e~r~~R~~~~ 137 (201)
T 3fdi_A 83 AIRQFNFIRKKANEEKESFVIVGRCAE------E--ILSDNPNMISAFILGDKDTKTKRVMER 137 (201)
T ss_dssp HHHHHHHHHHHHHTSCCCEEEESTTHH------H--HTTTCTTEEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCEEEEECCcc------h--hcCCCCCeEEEEEECCHHHHHHHHHHH
Confidence 1223334444441 3457888876321 1 1333223556788776 8999998876
No 108
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.72 E-value=9.2e-05 Score=69.27 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=32.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~ 306 (435)
+.+|.+.|+|||||||+++.+++.++ +..++.|.+.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg---~~~~d~g~~~r~ 46 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG---ARYLDTGAMYRI 46 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---CCcccCCcHHHH
Confidence 56899999999999999999999886 678888887654
No 109
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.71 E-value=3.1e-05 Score=69.05 Aligned_cols=26 Identities=15% Similarity=0.463 Sum_probs=23.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.++++++|++||||||+++.+...++
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998765
No 110
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.70 E-value=0.00042 Score=65.24 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=32.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~ 306 (435)
..+|.++|++||||||+++.+++.++ +..++++.+.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg---~~~~d~g~i~r~ 64 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN---WRLLDSGAIYRV 64 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT---CEEEEHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC---CCcCCCCceehH
Confidence 57899999999999999999999887 667788877643
No 111
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.70 E-value=0.00023 Score=66.10 Aligned_cols=38 Identities=8% Similarity=0.051 Sum_probs=31.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~ 306 (435)
..+|.+.|.+||||||+|+.+++.++ +..++.|.++..
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg---~~~~d~~~~~~~ 51 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG---IHFYDDDILKLA 51 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT---CEEECHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC---CcEEcHHHHHHH
Confidence 46899999999999999999999887 667887766543
No 112
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.62 E-value=0.0002 Score=66.58 Aligned_cols=118 Identities=11% Similarity=0.043 Sum_probs=55.7
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCC-c--cEEE-e-cc------HHHHHHhccCCCccCCCChHHHHH---HHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE-K--RYIL-L-GT------NLILEQMKVPGLLRKHNYSERFQC---LMGRAN 330 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~-~--~~~~-l-s~------D~ir~~~~~~G~~~~~~~~~~~~~---~~~~~~ 330 (435)
...+|++.|++||||||.++.+.+.+.. . .++. . -+ +.|++-+. +. .. +.+.-+. +..++
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~--~~-~~--~~~~~e~llf~a~R~- 93 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLF--KA-QG--LDSLSELLFFIAMRR- 93 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHH--TC-SS--CCHHHHHHHHHHHHH-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHh--CC-CC--CCHHHHHHHHHHHHH-
Confidence 4689999999999999999999876543 1 1222 1 11 12333321 11 11 2222121 11121
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCcCHHH-H--------HHHHHHHh----cCCcEEEEEECCh-HHHHHHHHHh
Q 013831 331 AIFDVLLSRASRTPRNFIIDQTNVFKSA-R--------KRKLRLFV----NFRKIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 331 ~~~~~ll~~al~~g~~vIlD~Tn~~~~~-R--------~~~~~~~~----~~~~~~vv~l~~~-ee~~~R~~~R 390 (435)
+.+.+.+.-++.+|..||.|--- .... - ..++..+. +...=.+|+++.+ +++++|. .|
T Consensus 94 ~~~~~~I~paL~~g~~VI~DRy~-~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~r 165 (223)
T 3ld9_A 94 EHFVKIIKPSLMQKKIVICDRFI-DSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-CK 165 (223)
T ss_dssp HHHHHTHHHHHHTTCEEEEESCH-HHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC-----------
T ss_pred HHHHHHHHHHHhcCCeEEEccch-hhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-cc
Confidence 23344566678999999999732 1110 0 11222221 1112345788775 8888888 44
No 113
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.56 E-value=0.00017 Score=67.21 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=24.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~ 292 (435)
+.+|++.|++||||||+++.+++.+++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 578999999999999999999999854
No 114
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.53 E-value=3e-05 Score=71.89 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=17.3
Q ss_pred cceEEEEEccCCCChhHHHHHHH-hhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWV-KDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~-~~~~ 291 (435)
..+++.++|++||||||+++.++ ...+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 35799999999999999999999 6653
No 115
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.23 E-value=0.00026 Score=65.66 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=23.4
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhh
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~ 289 (435)
+...+|.+.|+.||||||+++.++..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34689999999999999999999877
No 116
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.21 E-value=0.0002 Score=65.62 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=31.2
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE 305 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~ 305 (435)
.+|.++|+|||||||+++.+++.++ +..+++|.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g---~~~~d~g~i~~ 41 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ---WHLLDSGAIYR 41 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CCcccCcceee
Confidence 5799999999999999999998876 66788888755
No 117
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=97.15 E-value=0.0024 Score=58.19 Aligned_cols=115 Identities=17% Similarity=0.138 Sum_probs=60.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc-HHHHHHh-ccCCCc-----cCCCChHHHHHHHH-HHHHHHHHH-
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILEQM-KVPGLL-----RKHNYSERFQCLMG-RANAIFDVL- 336 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~-D~ir~~~-~~~G~~-----~~~~~~~~~~~~~~-~~~~~~~~l- 336 (435)
..+|+++|.|||||+|+|+.+.+.++..++.+++- |.+++++ ...|.. ....|.+.+...+. .. ..++..
T Consensus 11 ~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g-~~~R~~d 89 (202)
T 3ch4_B 11 RLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWG-EEKRQAD 89 (202)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHH-HHHHHHC
T ss_pred CEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHH-HHHHhcC
Confidence 47999999999999999999988553222444444 6666432 122321 01122222221111 11 111111
Q ss_pred ----HHHHhc--CCCeEEEeCCCcCHHHHHHHHHHHhc-CC-cEEEEEECCh-HHHHHH
Q 013831 337 ----LSRASR--TPRNFIIDQTNVFKSARKRKLRLFVN-FR-KIAVVVFPKP-EDLKIR 386 (435)
Q Consensus 337 ----l~~al~--~g~~vIlD~Tn~~~~~R~~~~~~~~~-~~-~~~vv~l~~~-ee~~~R 386 (435)
+..++. ....+|||+.=- ...++.|+. ++ .+.+|.+.++ +...+|
T Consensus 90 ~~~~~~~~~~~~~~~~vII~dvR~-----~~Ev~~fr~~~g~~~~iirI~as~~~R~~R 143 (202)
T 3ch4_B 90 PGFFCRKIVEGISQPIWLVSDTRR-----VSDIQWFREAYGAVTQTVRVVALEQSRQQR 143 (202)
T ss_dssp TTTTHHHHSBTCCCSEEEECCCCS-----HHHHHHHHHHHGGGEEEEEEEECHHHHHHT
T ss_pred chHHHHHHHHhcCCCcEEEeCCCC-----HHHHHHHHHhCCCcEEEEEEECCHHHHHHH
Confidence 222222 224799999622 224555665 33 5777888775 565656
No 118
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.13 E-value=0.00033 Score=63.49 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=32.3
Q ss_pred CCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 263 ~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
.+.+.+|.++|.|||||||+++.++..+++ +.+++.|.+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~--~~~i~~D~~ 56 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPN--CSVISQDDF 56 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTSTT--EEEEEGGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCC--cEEEeCCcc
Confidence 344689999999999999999999988742 778888865
No 119
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.13 E-value=0.00037 Score=63.41 Aligned_cols=27 Identities=11% Similarity=0.426 Sum_probs=24.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..++|+++|++||||||+++.|++.++
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 367899999999999999999998876
No 120
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.08 E-value=0.00028 Score=63.60 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=31.3
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~ 306 (435)
+|.++|.|||||||+++.+++.++ +..++.|.+.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg---~~~~d~d~~~~~ 39 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG---VPYLSSGLLYRA 39 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT---CCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC---CceeccchHHHh
Confidence 789999999999999999999876 567888887654
No 121
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.08 E-value=0.00081 Score=59.43 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=53.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC---CccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~---~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~ 342 (435)
.+.++++|+||+||||+++.++.... +..++.++..++.+.+.. ....... . .++ ..+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~----~-----------~~~-~~~~ 99 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKH--LMDEGKD----T-----------KFL-KTVL 99 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHH--HHHHTCC----S-----------HHH-HHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--HhcCchH----H-----------HHH-HHhc
Confidence 57889999999999999999886542 222444555555443310 0000000 0 011 1124
Q ss_pred CCCeEEEeCC---CcCHHHHHHHHHHHhcC--CcEEEEEEC
Q 013831 343 TPRNFIIDQT---NVFKSARKRKLRLFVNF--RKIAVVVFP 378 (435)
Q Consensus 343 ~g~~vIlD~T---n~~~~~R~~~~~~~~~~--~~~~vv~l~ 378 (435)
....+|||.. ..++..+..+++.+... ....+|+..
T Consensus 100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~ts 140 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITT 140 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 6778999985 35677777655655442 245555553
No 122
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.04 E-value=0.00039 Score=68.11 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=30.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
+.+|+++|++||||||+|+.+++.++ ..+++.|.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~---~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP---CELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC---EEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC---CcEEeccch
Confidence 46899999999999999999999987 678888764
No 123
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=97.00 E-value=0.0051 Score=54.33 Aligned_cols=135 Identities=10% Similarity=0.066 Sum_probs=84.8
Q ss_pred CCCCCeEEcCCCceEeecCCCCcccceeeEeecceeeCCEEEEEEEEEeecCCCCCCCCCCCCCcEEEEEecCCCCCCCC
Q 013831 50 DCDLDFDIEDNGLKSSGLHQEGFAYCWSGARANVGINGGKYCFGCKIVSTQPVDMEDTPPDQQHVCRVGTSRGDDPVGKL 129 (435)
Q Consensus 50 d~~~~l~is~d~l~~~~~~~~~~~~~~~~~ra~~gv~~G~~YfEv~i~~~~~~~~~~~~~~~~~~~rvG~s~~~~~~~~l 129 (435)
.+..++.|++|+.+++... ..+-+=|-++.++..|. -|+|+|.+... .-.|.++||+++.+-.....
T Consensus 14 ~~G~nI~L~~~~~~A~R~~----sf~~givFS~RPl~~~E-~~~v~I~~~~~--------~wsG~l~~GvT~~dP~~l~~ 80 (168)
T 2yue_A 14 VHGDNIRISRDGTLARRFE----SFCRAITFSARPVRINE-RICVKFAEISN--------NWNGGIRFGFTSNDPVTLEG 80 (168)
T ss_dssp EECTTEEECCSSCCEEECS----CSSCCEEEESSCCCSSC-CEEEEEEECCS--------SSSSCCEEEEESSCGGGTTT
T ss_pred ccCCCeEECCCCcEEEecc----cCCceEEEECCCCcCCC-EEEEEEEeecC--------CcceeEEEeeeecCHHHcCC
Confidence 5688999999999887642 24446788889998764 36777775421 13589999999865111111
Q ss_pred CCCCcceEEe----cCCceEeCCCcccCCCCCCCCCEEEEEEecCCCCceeEEEEeCccceeecccccCCCCCccccccc
Q 013831 130 GETEQSFGFG----GTGKFSHGGNFLNFGEKFGVGDTIICAIDLESKPLATIGFAKNGKWLGTAKQFDAGSNGLGVVDSA 205 (435)
Q Consensus 130 G~d~~S~gy~----~~G~~~~~~~~~~yg~~f~~gDvIGc~ld~~~~p~~~i~ft~NG~~lg~af~~~~~~~~l~~~~~~ 205 (435)
+--+|+.. ..|.+. ....+.|+ ..||+|+..++-. ++++|..||+..|++++. ++
T Consensus 81 --~lP~~a~~dL~~~~~~W~-~~l~~~~~---~~g~~l~f~v~~~----G~l~~~iNg~~~g~~~~~-V~---------- 139 (168)
T 2yue_A 81 --TLPKYACPDLTNRPGFWA-KALHEQYC---EKDNILYYYVNGA----GDVIYGINNEEKGVILTG-ID---------- 139 (168)
T ss_dssp --CCCSSSSSHHHHSTTBCC-EECCSTTC---CSSCEEEEEECTT----SEEEEEESSCEEEEEEEC-CC----------
T ss_pred --CCCCcCchHHhcCCCEEE-EEeccccc---cCCCEEEEEEcCC----CEEEEEECCCccEEEEcC-CC----------
Confidence 11111110 011110 01122333 6799999999854 699999999999999852 11
Q ss_pred cccccCCCceeeEEEEcC
Q 013831 206 VKERQCESAVFPHILLKN 223 (435)
Q Consensus 206 ~~g~~~~~~lfP~v~l~~ 223 (435)
...+||..+-+++
T Consensus 140 -----~~~pLwavvDvyG 152 (168)
T 2yue_A 140 -----TRSLLWTVIDIYG 152 (168)
T ss_dssp -----CSSCCEEEEECCS
T ss_pred -----CCCceEEEEEccC
Confidence 1457888888874
No 124
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.96 E-value=0.0024 Score=57.70 Aligned_cols=26 Identities=23% Similarity=0.426 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.++++++|++||||||+++.+...++
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46789999999999999999987543
No 125
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.92 E-value=0.0006 Score=63.28 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=33.7
Q ss_pred CCcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (435)
Q Consensus 263 ~~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~ 306 (435)
.....+|.++|.|||||||+++.+++.++ +..++.|.+.+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg---~~~~d~d~~~~~ 53 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG---FTYLDTGAMYRA 53 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHC---CEEEEHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcC---CceecCCCeeEc
Confidence 34467899999999999999999998876 667888887654
No 126
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.86 E-value=0.00071 Score=65.77 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=31.1
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ 302 (435)
.+.+|+++|++||||||+|..+++.++ ..+||.|.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~---~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP---VELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC---EEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC---CcEEeccc
Confidence 467999999999999999999999987 67888875
No 127
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.84 E-value=0.00065 Score=66.96 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=30.8
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
.+|+++|++||||||+|+.|++.++ ..+||.|.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~---~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN---GEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT---EEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC---Cceeccccc
Confidence 5899999999999999999999987 678888864
No 128
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.84 E-value=0.0057 Score=53.20 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=21.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
...++++|+||+||||+|+.+++.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999998775
No 129
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.81 E-value=0.00076 Score=61.45 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=31.8
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQ 306 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~ 306 (435)
.+|.++|.|||||||+++.+++.++ +..++.|.+.+.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g---~~~~~~d~~~~~ 40 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS---MIYVDTGAMYRA 40 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT---CEEEEHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC---CceecCChHHHH
Confidence 5789999999999999999999886 678888887543
No 130
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.81 E-value=0.0021 Score=61.86 Aligned_cols=40 Identities=15% Similarity=0.073 Sum_probs=31.4
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir 304 (435)
+.+..+++.|+||+|||++|+.+++.+. ..++.++...+.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~-~~~i~v~~~~l~ 73 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMG-INPIMMSAGELE 73 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHT-CCCEEEEHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-CCEEEEeHHHhh
Confidence 3467889999999999999999999875 336777665543
No 131
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.76 E-value=0.00049 Score=62.97 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=27.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI 303 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~i 303 (435)
...++++|+||+||||+|+.++.... +..+..++.+.+
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 46789999999999999999987543 123555655443
No 132
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.65 E-value=0.0012 Score=64.40 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=31.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
..+|+++|++||||||+|..+++.++ ..+||.|.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~---~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN---GEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT---EEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc---cceeecCcc
Confidence 46899999999999999999999987 678888864
No 133
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.63 E-value=0.0051 Score=56.63 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=24.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~ 292 (435)
..+|++.|++||||||.++.+++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 578999999999999999999998764
No 134
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.51 E-value=0.0047 Score=53.77 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
...++++|+||+||||+|+.+++.+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999998765
No 135
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=96.46 E-value=0.0085 Score=58.83 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=23.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~ 292 (435)
..+|.+-|+-||||||.++.+++.+..
T Consensus 7 ~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 7 IVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468888999999999999999988754
No 136
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=96.45 E-value=0.027 Score=56.04 Aligned_cols=30 Identities=20% Similarity=0.074 Sum_probs=22.1
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCcc
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKR 294 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~ 294 (435)
...+|.+-|+-||||||.++.|++.+....
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~Lae~L~~~g 77 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLVALGSRDD 77 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHHC----CC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 355788889999999999999998775433
No 137
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.44 E-value=0.0065 Score=58.80 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=28.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLIL 304 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir 304 (435)
...++++|+||+||||+|+.++.... +..++.++...+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 34578999999999999999987652 2336777765543
No 138
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.38 E-value=0.0028 Score=57.19 Aligned_cols=39 Identities=23% Similarity=0.159 Sum_probs=29.3
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLI 303 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~i 303 (435)
...+|.++|.+||||||+++.+...++ +..+..++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 468999999999999999999987542 122556666643
No 139
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.37 E-value=0.0039 Score=60.53 Aligned_cols=39 Identities=31% Similarity=0.337 Sum_probs=29.7
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL 302 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ 302 (435)
..+++|+++|++||||||++..++..+. +..+..++.|.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 4578999999999999999999986532 23466666663
No 140
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.36 E-value=0.027 Score=55.11 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
...+++.|+||+||||+|+.+++.+.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 36789999999999999999998765
No 141
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.29 E-value=0.0087 Score=57.21 Aligned_cols=25 Identities=36% Similarity=0.262 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
..-++++|+||+||||+|+.+++.+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999887654
No 142
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=96.21 E-value=0.014 Score=57.26 Aligned_cols=29 Identities=21% Similarity=0.076 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCcc
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKR 294 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~ 294 (435)
..+|.+-|+-||||||.++.+++.+....
T Consensus 4 ~~fI~~EG~dGsGKTT~~~~La~~L~~~g 32 (331)
T 1e2k_A 4 LLRVYIDGPHGMGKTTTTQLLVALGSRDD 32 (331)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC----CC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 45788889999999999999998765433
No 143
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.20 E-value=0.0028 Score=57.52 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.9
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..++|.++|++||||||+++.++..++
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 468999999999999999999987654
No 144
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.18 E-value=0.017 Score=58.74 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=28.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC----CCccEEEeccHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH----PEKRYILLGTNLI 303 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~----~~~~~~~ls~D~i 303 (435)
..-+++.|+||+||||+|+.++... ++..++.++...+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 4568999999999999999988654 2344666766544
No 145
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.14 E-value=0.0041 Score=60.77 Aligned_cols=41 Identities=17% Similarity=0.033 Sum_probs=31.4
Q ss_pred CCcceEEEEEccCCCChhHHHHHHHhhCC----CccEEEeccHHH
Q 013831 263 MKDCEVMMMVGLPASGKTTWAEKWVKDHP----EKRYILLGTNLI 303 (435)
Q Consensus 263 ~~~~~liim~GlPGSGKST~A~~l~~~~~----~~~~~~ls~D~i 303 (435)
...+.+|.++|++||||||+++.+...+. .....+++.|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 34578999999999999999999987653 123667777753
No 146
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.13 E-value=0.0018 Score=62.35 Aligned_cols=39 Identities=8% Similarity=0.150 Sum_probs=27.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC--ccEEEeccHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGTNLIL 304 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls~D~ir 304 (435)
..+|.++|.+||||||+|+.+++.++. ..+.+|+.|.+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 568999999999999999999886431 125678887653
No 147
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.09 E-value=0.0029 Score=63.62 Aligned_cols=33 Identities=12% Similarity=0.274 Sum_probs=29.6
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ 302 (435)
.+|+++|++||||||+|..+++.++ ..+||.|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~---~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN---GEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT---EEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC---CeEeecCc
Confidence 5899999999999999999999987 56788876
No 148
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.06 E-value=0.046 Score=52.90 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=26.1
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~ 300 (435)
.-+++.|+||+||||+|+.++..... .++.++.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~-~~~~~~~ 88 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSA-NIKTTAA 88 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTC-CEEEEEG
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCC-CeEEecc
Confidence 34789999999999999999988753 3555543
No 149
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.06 E-value=0.0032 Score=56.31 Aligned_cols=31 Identities=26% Similarity=0.466 Sum_probs=24.7
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~ 300 (435)
++++.|.+||||||||++++.. . ...+.+.+
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~-~~~~yiaT 31 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-A-PQVLYIAT 31 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-C-SSEEEEEC
T ss_pred CEEEECCCCCcHHHHHHHHHhc-C-CCeEEEec
Confidence 4789999999999999999976 3 33556655
No 150
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.00 E-value=0.0072 Score=58.72 Aligned_cols=37 Identities=14% Similarity=0.319 Sum_probs=29.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
+.-+++.|+||+|||++|+.++..... .++.++...+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~-~~~~v~~~~l 87 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANS-TFFSVSSSDL 87 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTC-EEEEEEHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCC-CEEEEchHHH
Confidence 456899999999999999999988753 4667766554
No 151
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.0044 Score=62.35 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=28.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D 301 (435)
++=++|.|+||+|||++|+.++.+... .++.++..
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~-~f~~v~~s 216 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDC-KFIRVSGA 216 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTC-EEEEEEGG
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCC-CceEEEhH
Confidence 456899999999999999999998763 36666544
No 152
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.92 E-value=0.0041 Score=56.14 Aligned_cols=37 Identities=35% Similarity=0.310 Sum_probs=28.6
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ 302 (435)
.+++|.++|++||||||+++.++..++. .+.+++.|.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~-~i~~v~~d~ 41 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGE-RVALLPMDH 41 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGG-GEEEEEGGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEecCc
Confidence 4689999999999999999999886531 245566554
No 153
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=95.79 E-value=0.0057 Score=58.98 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCc
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEK 293 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~ 293 (435)
.+.|+|+|+ ||+|+.++|.+++|.+
T Consensus 100 ~RpvVl~Gp---~K~tl~~~Ll~~~p~~ 124 (292)
T 3tvt_A 100 TRPVIILGP---LKDRINDDLISEYPDK 124 (292)
T ss_dssp CCCEEEEST---THHHHHHHHHHHCTTT
T ss_pred CCeEEEeCC---CHHHHHHHHHHhChhh
Confidence 467888887 5999999999998863
No 154
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.77 E-value=0.0097 Score=57.24 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=31.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE 305 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~ 305 (435)
..-++++|+||+||||+|+.++.... ..++.++...+..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~-~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQ-ANFISIKGPELLT 87 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT-CEEEEECHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhC-CCEEEEEhHHHHh
Confidence 46789999999999999999999876 3467777655543
No 155
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.0068 Score=61.72 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=28.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D 301 (435)
++=|+|.|+||+|||++|+.++.+... .++.++..
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~~-~~~~v~~s 249 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIGA-NFIFSPAS 249 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTC-EEEEEEGG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCC-CEEEEehh
Confidence 567899999999999999999998763 35666544
No 156
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.0049 Score=62.63 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=28.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D 301 (435)
++=++|.|+||+|||++|+.++.+... .++.++..
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~-~~~~v~~~ 240 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKA-AFIRVNGS 240 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTC-EEEEEEGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC-CeEEEecc
Confidence 567899999999999999999998763 35666543
No 157
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.74 E-value=0.0074 Score=58.39 Aligned_cols=38 Identities=26% Similarity=0.220 Sum_probs=28.8
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC---C-ccEEEeccH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP---E-KRYILLGTN 301 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~---~-~~~~~ls~D 301 (435)
...++|.++|++||||||+++.++..++ . ..+.+|+.|
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d 119 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD 119 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecC
Confidence 3468999999999999999999987543 1 225566655
No 158
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.73 E-value=0.04 Score=52.80 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=25.0
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls 299 (435)
..++++|+||+||||+|+.++..... .++.++
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~-~~~~~~ 70 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGV-NLRVTS 70 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTC-CEEEEC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCC-CEEEEe
Confidence 45789999999999999999887652 244444
No 159
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.72 E-value=0.01 Score=56.12 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=27.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~ 300 (435)
..-+++.|+||+||||+|+.++..+.. .++.++.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~-~~~~v~~ 84 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNA-TFIRVVG 84 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTC-EEEEEEG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCC-CEEEEeh
Confidence 345899999999999999999998763 3555543
No 160
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.72 E-value=0.044 Score=54.55 Aligned_cols=34 Identities=18% Similarity=0.384 Sum_probs=27.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~ 300 (435)
..-+++.|+||+|||++|+.++..... .++.++.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~-~~~~v~~ 181 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNA-TFFNISA 181 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTC-EEEEECS
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcC-cEEEeeH
Confidence 356899999999999999999988753 3555544
No 161
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.0043 Score=63.13 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=29.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ 302 (435)
++=|+|.|+||+|||++|+.++.+... .++.++...
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~~-~f~~v~~s~ 250 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTNA-TFLKLAAPQ 250 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTC-EEEEEEGGG
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhCC-CEEEEehhh
Confidence 577899999999999999999998763 366665543
No 162
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.70 E-value=0.0071 Score=54.99 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=27.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ 302 (435)
...|+++|++||||||+|..|++... .+|+.|.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~----~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH----RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC----EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC----eEEecch
Confidence 46799999999999999999998764 4566563
No 163
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.69 E-value=0.0049 Score=55.65 Aligned_cols=36 Identities=28% Similarity=0.143 Sum_probs=27.6
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D 301 (435)
..++++++|.|||||||++..++. ..+...+.++.+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~ 54 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTE 54 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECC
Confidence 357999999999999999999987 333345566553
No 164
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.66 E-value=0.0057 Score=58.86 Aligned_cols=28 Identities=18% Similarity=0.064 Sum_probs=24.3
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..+.+|.++|.+||||||+|+.+...++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4578999999999999999999987654
No 165
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.0051 Score=62.85 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=29.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ 302 (435)
++=|+|.|+||+|||++|+.++.+... .++.++...
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~~-~fi~vs~s~ 278 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTDA-TFIRVIGSE 278 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHTC-EEEEEEGGG
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCC-CeEEEEhHH
Confidence 567899999999999999999998763 366665443
No 166
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.63 E-value=0.036 Score=54.89 Aligned_cols=138 Identities=17% Similarity=0.128 Sum_probs=71.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEeccHHHHHHhccCCCccC---CCC-hHHHHHHHHHHHHHHHHHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLGTNLILEQMKVPGLLRK---HNY-SERFQCLMGRANAIFDVLLSRA 340 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls~D~ir~~~~~~G~~~~---~~~-~~~~~~~~~~~~~~~~~ll~~a 340 (435)
.++++++|++||||||+.+.+....+. .+.+.+. | . .++.. ...+. +.+ +....... ........+..+
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie-~-~-~e~~~-~~~~~~v~~v~~q~~~~~~~--~~~t~~~~i~~~ 248 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE-D-V-PELFL-PDHPNHVHLFYPSEAKEEEN--APVTAATLLRSC 248 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE-S-S-SCCCC-TTCSSEEEEECC------------CCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC-C-c-cccCc-cccCCEEEEeecCccccccc--cccCHHHHHHHH
Confidence 468999999999999999999987652 3445553 1 1 12211 10110 111 11100000 011223455566
Q ss_pred hcCCCe-EEEeCCCcCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHhhhhc--CCCCcHHHHHHHHh-ccc
Q 013831 341 SRTPRN-FIIDQTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKRFKEM--GKEVPADAVNNMLA-NYV 411 (435)
Q Consensus 341 l~~g~~-vIlD~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~ee~~~R~~~R~~~~--~~~vp~~vi~~m~~-~fe 411 (435)
++...+ +|++.. -...... +++.+..-+ .+..+.-...+...+|+....... ++.+|.++++++.+ .+.
T Consensus 249 l~~~pd~~l~~e~-r~~~~~~-~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~~~~~~~~~~~~i~~~l~~~~~ 323 (361)
T 2gza_A 249 LRMKPTRILLAEL-RGGEAYD-FINVAASGHGGSITSCHAGSCELTFERLALMVLQNRQGRQLPYEIIRRLLYLVVD 323 (361)
T ss_dssp TTSCCSEEEESCC-CSTHHHH-HHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHCC
T ss_pred HhcCCCEEEEcCc-hHHHHHH-HHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhccccccCCCHHHHHHHHHHHcC
Confidence 665554 455553 2222222 455554422 244444455577888988775443 34688877777654 443
No 167
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.61 E-value=0.017 Score=63.18 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=30.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
++=|+|.|+||+|||++|+.++.++.. .++.++..++
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~-~~~~v~~~~l 274 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGA-FFFLINGPEI 274 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTC-EEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC-eEEEEEhHHh
Confidence 577999999999999999999998863 3666665554
No 168
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.58 E-value=0.008 Score=58.56 Aligned_cols=35 Identities=14% Similarity=0.365 Sum_probs=28.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~ 300 (435)
+.-+++.|+||+|||++|+.++.......++.++.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~ 79 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 79 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEEC
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEh
Confidence 46789999999999999999999874444655553
No 169
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.55 E-value=0.011 Score=58.32 Aligned_cols=36 Identities=14% Similarity=0.332 Sum_probs=28.4
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
.-|+++|+||+||||+|+.++..+.. .++.++...+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~-~~~~v~~~~l 120 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANS-TFFSVSSSDL 120 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTC-EEEEEEHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCC-CEEEeeHHHH
Confidence 45788999999999999999998753 3666665544
No 170
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.53 E-value=0.067 Score=52.53 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=26.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC--CCccEEEecc
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGT 300 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~ 300 (435)
..++++.|.||+||||||..++... .+..+.++|.
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 5899999999999999999887542 2233555655
No 171
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.49 E-value=0.0097 Score=53.22 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=29.4
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHHHHHHh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNLILEQM 307 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ir~~~ 307 (435)
..++++|+||+||||+|+.++.... +..++.++...+...+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFREL 97 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHH
Confidence 6788999999999999999987542 2235556655554443
No 172
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.0072 Score=61.23 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=28.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ 302 (435)
++=|+|.|+||+|||++|+.++.+... .++.++..+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~-~fi~v~~s~ 251 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSA-TFLRIVGSE 251 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTC-EEEEEESGG
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCC-CEEEEEHHH
Confidence 567899999999999999999998763 366665443
No 173
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.48 E-value=0.012 Score=54.68 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=26.7
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEeccHH
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNL 302 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ 302 (435)
++++|+||+||||+++.++.... ...+.++...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~~~ 84 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSD 84 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeHHH
Confidence 88999999999999999998875 3466665443
No 174
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.47 E-value=0.0079 Score=54.39 Aligned_cols=27 Identities=26% Similarity=0.280 Sum_probs=24.2
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..+++.++|++||||||+++.++..++
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 468999999999999999999988775
No 175
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.46 E-value=0.0063 Score=53.85 Aligned_cols=26 Identities=46% Similarity=0.639 Sum_probs=22.5
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
.+.+++++|.+||||||++.+++..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 36789999999999999999998764
No 176
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.45 E-value=0.02 Score=58.72 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEEccCCCChhHHHHHHHhhC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~ 290 (435)
=++++|+||+||||+|+.++...
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 35889999999999999998774
No 177
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.44 E-value=0.0075 Score=62.61 Aligned_cols=27 Identities=0% Similarity=-0.092 Sum_probs=24.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
...+|+++|+|||||||+|+.|++.+.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999876
No 178
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.42 E-value=0.038 Score=54.22 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
+..++++|+||+||||+|+.+++..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998764
No 179
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.38 E-value=0.0072 Score=55.34 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=24.1
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..+++.++|++||||||+++.++..++
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 357899999999999999999998775
No 180
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.30 E-value=0.01 Score=57.76 Aligned_cols=38 Identities=24% Similarity=0.086 Sum_probs=28.6
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC---C-ccEEEeccH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP---E-KRYILLGTN 301 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~---~-~~~~~ls~D 301 (435)
...++|.++|++||||||+++.++..++ + ..+..++.|
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd 129 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTD 129 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecC
Confidence 4578999999999999999999987542 1 234455555
No 181
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.29 E-value=0.011 Score=55.20 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=25.8
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~ 300 (435)
.-++++|+||+||||+|+.++..++. .++.++.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~-~~~~i~~ 78 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKV-PFFTISG 78 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC-CEEEECS
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCC-CEEEEeH
Confidence 34889999999999999999987652 2555543
No 182
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.28 E-value=0.009 Score=54.24 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=22.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~ 289 (435)
..+++.++|+|||||||+++.++..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999999863
No 183
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.23 E-value=0.0082 Score=55.26 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=21.0
Q ss_pred cceEEEEEccCCCChhHHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWV 287 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~ 287 (435)
..+++.++|++||||||+++.++
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 46899999999999999999887
No 184
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.23 E-value=0.014 Score=56.64 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=27.6
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls 299 (435)
..++++++|..||||||+.+.+....++.++.+|-
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~ 37 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE 37 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE
Confidence 36799999999999999999999776444444443
No 185
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.21 E-value=0.0092 Score=56.78 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=24.6
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls 299 (435)
+++.|+||+||||+++.++...+. ..+.++
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~-~~i~i~ 76 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL-NFISVK 76 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC-EEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC-CEEEEE
Confidence 899999999999999999988763 244443
No 186
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.21 E-value=0.016 Score=54.73 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=27.1
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
++++|+||+||||+++.++.... ...+.++...+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~~~~ 109 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDF 109 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHH
T ss_pred EEEECCCcChHHHHHHHHHHHcC-CCEEEecHHHH
Confidence 88999999999999999998876 34666654433
No 187
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.20 E-value=0.011 Score=54.99 Aligned_cols=27 Identities=30% Similarity=0.162 Sum_probs=23.7
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
...+|.++|++||||||+++.++..++
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 468999999999999999999988653
No 188
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.17 E-value=0.039 Score=56.26 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=25.9
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls 299 (435)
.-+++.|+||+||||+|+.+++.... .++.++
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~-~f~~l~ 82 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANA-DVERIS 82 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTC-EEEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCC-CeEEEE
Confidence 46899999999999999999998753 355554
No 189
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.15 E-value=0.013 Score=54.36 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=26.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~ 300 (435)
+.-+++.|+||+||||+|+.++..+.. .++.++.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~-~~~~~~~ 72 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQV-PFLAMAG 72 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTC-CEEEEET
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC-CEEEech
Confidence 456889999999999999999987653 3555543
No 190
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.15 E-value=0.01 Score=52.66 Aligned_cols=49 Identities=16% Similarity=0.103 Sum_probs=31.6
Q ss_pred hcCCCeEEEeC----CCcCHHHHHHHHHHHhcCCcEEEEEEC--C-hHHHHHHHHHh
Q 013831 341 SRTPRNFIIDQ----TNVFKSARKRKLRLFVNFRKIAVVVFP--K-PEDLKIRSVKR 390 (435)
Q Consensus 341 l~~g~~vIlD~----Tn~~~~~R~~~~~~~~~~~~~~vv~l~--~-~ee~~~R~~~R 390 (435)
+.....+|+|- +++++..++.+++.+... ...++++. + +.....+...|
T Consensus 97 ~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~-~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDP-NVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCT-TSEEEEECCSSCCSHHHHHHHTC
T ss_pred ccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcC-CCeEEEEEccCCCchHHHHHHhc
Confidence 56778999998 567787888777767664 33343333 2 34555666666
No 191
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.13 E-value=0.014 Score=55.61 Aligned_cols=34 Identities=18% Similarity=0.401 Sum_probs=27.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~ 300 (435)
..-+++.|+||+||||+|+.++..... .++.++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~-~~~~i~~ 87 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSA-TFLNISA 87 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTC-EEEEEES
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCC-CeEEeeH
Confidence 457899999999999999999998753 3555543
No 192
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.12 E-value=0.011 Score=50.87 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
.+.++++|++|+||||+++.++...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999998754
No 193
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.02 E-value=0.022 Score=56.10 Aligned_cols=35 Identities=14% Similarity=0.293 Sum_probs=28.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D 301 (435)
+.-++++|+||+||||+|+.++.... ..++.++..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~-~~~~~i~~~ 151 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSG-ATFFSISAS 151 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTT-CEEEEEEGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC-CeEEEEehH
Confidence 45789999999999999999999875 335666543
No 194
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.02 E-value=0.012 Score=56.94 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=27.7
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D 301 (435)
..+++.++|++||||||+++.++..+. +..+.+.+.|
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D 139 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD 139 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 478999999999999999999985432 2235555554
No 195
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.98 E-value=0.014 Score=57.12 Aligned_cols=38 Identities=26% Similarity=0.275 Sum_probs=28.0
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D 301 (435)
..+++++++|++||||||+++.++..+. +..+...+.|
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D 166 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD 166 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 4579999999999999999999886432 1224455544
No 196
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.98 E-value=0.015 Score=59.30 Aligned_cols=38 Identities=13% Similarity=0.334 Sum_probs=29.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLI 303 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~i 303 (435)
+.-+++.|+||+|||++|+.++..+....++.++...+
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l 204 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 204 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC--
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHH
Confidence 45789999999999999999999874445666665443
No 197
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.98 E-value=0.013 Score=49.90 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=20.3
Q ss_pred EEEEccCCCChhHHHHHHHhhC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~ 290 (435)
|++.|.||+|||++|+.++...
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999998765
No 198
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.91 E-value=0.013 Score=52.97 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=25.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEecc
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGT 300 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~ 300 (435)
.++++++|+|||||||+++.++.... +.....++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 57899999999999999999884321 122555554
No 199
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.87 E-value=0.014 Score=51.68 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=22.7
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
.+.+++++|.+||||||+++.+...+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998754
No 200
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.86 E-value=0.017 Score=55.93 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=28.3
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D 301 (435)
...++++++|++||||||+++.++..+. +..+.+.+.|
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d 137 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD 137 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeec
Confidence 3578999999999999999999986532 2235555555
No 201
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.85 E-value=0.0075 Score=51.28 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=23.2
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls 299 (435)
|++.|.||+|||++|+.++.... .++.++
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~~--~~~~~~ 58 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNGT--PWVSPA 58 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTTS--CEECCS
T ss_pred EEEECCCCccHHHHHHHHHHhCC--CeEEec
Confidence 78899999999999999987654 355543
No 202
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.85 E-value=0.018 Score=50.12 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=24.6
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE 292 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~ 292 (435)
..+++.++|+.||||||+.+.++..++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l~~ 59 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 3689999999999999999999987653
No 203
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.84 E-value=0.016 Score=58.99 Aligned_cols=37 Identities=30% Similarity=0.231 Sum_probs=28.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D 301 (435)
.+.+|+++|++||||||++.+++..+. ++++.+++.|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 478999999999999999999875432 2346666666
No 204
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.78 E-value=0.014 Score=59.47 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=29.3
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTNL 302 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D~ 302 (435)
.+.+|+++|+||+||||.+.+++..+. ++++.+++.|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 478999999999999999999875432 33466777663
No 205
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=94.76 E-value=0.069 Score=51.51 Aligned_cols=107 Identities=10% Similarity=-0.033 Sum_probs=62.7
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP 344 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g 344 (435)
...+|++-|.-||||||.++.+...+....+.++.+. -++. ++.. ...+.......-..|
T Consensus 85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~-------~Pt~----------eE~~---~~yl~R~~~~LP~~G 144 (304)
T 3czq_A 85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALT-------KPTE----------TERG---QWYFQRYVATFPTAG 144 (304)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECC-------SCCH----------HHHT---SCTTHHHHTTCCCTT
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeC-------CcCh----------HHHh---chHHHHHHHhcccCC
Confidence 3688999999999999999999999876555444321 0110 0000 001111222223789
Q ss_pred CeEEEeCCCcCHH------------HHHHHHHHHhc-------CC-cEEEEEECCh-HHHHHHHHHhh
Q 013831 345 RNFIIDQTNVFKS------------ARKRKLRLFVN-------FR-KIAVVVFPKP-EDLKIRSVKRF 391 (435)
Q Consensus 345 ~~vIlD~Tn~~~~------------~R~~~~~~~~~-------~~-~~~vv~l~~~-ee~~~R~~~R~ 391 (435)
..||+|-..+..- ...+.++.+.. .+ ....++|+.+ ++.++|...|.
T Consensus 145 ~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~ 212 (304)
T 3czq_A 145 EFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRR 212 (304)
T ss_dssp CEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHH
T ss_pred eEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhh
Confidence 9999997644332 11122333322 12 3344678775 88899998874
No 206
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=94.69 E-value=0.031 Score=52.26 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=27.9
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEecc-HHHHH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT-NLILE 305 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~-D~ir~ 305 (435)
.+|.++|.+||||||+|+.+...++ +.+++. +.+++
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g---~~~~~~~~~~~~ 38 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYS---AVKYQLAGPIKD 38 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSC---EEECCTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC---CeEEecChHHHH
Confidence 5789999999999999999988766 555654 34433
No 207
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.68 E-value=0.2 Score=50.96 Aligned_cols=36 Identities=14% Similarity=0.357 Sum_probs=26.9
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC---CCccEEEecc
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGT 300 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~---~~~~~~~ls~ 300 (435)
...++++.|.||+||||++..++... .+..+..+|.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 36799999999999999999987542 1223566664
No 208
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.67 E-value=0.014 Score=53.48 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=22.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~ 289 (435)
..++++++|+|||||||+++.++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3579999999999999999999873
No 209
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.63 E-value=0.019 Score=55.33 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=28.8
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC---CCccEEEeccHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGTNL 302 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~---~~~~~~~ls~D~ 302 (435)
..++++++|++||||||++..++..+ .++++..+..|.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 46799999999999999999998543 233466666653
No 210
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.59 E-value=0.027 Score=55.48 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=26.6
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~ 300 (435)
.-++++|+||+||||+|+.+++.+. ..++.++.
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~~-~~~~~~~~ 84 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLLD-VPFTMADA 84 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT-CCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC-CCEEEech
Confidence 4578999999999999999999875 33666644
No 211
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.59 E-value=0.017 Score=55.14 Aligned_cols=25 Identities=24% Similarity=0.330 Sum_probs=22.1
Q ss_pred cceEEEEEccCCCChhHHHHHHHhh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~ 289 (435)
..++++++|.|||||||+++.++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3689999999999999999998754
No 212
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.58 E-value=0.02 Score=54.36 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=26.1
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~ 300 (435)
.-++++|+||+||||+|+.+++.++. .++.++.
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~~-~~~~i~~ 83 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLANA-PFIKVEA 83 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTC-CEEEEEG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC-CEEEEcc
Confidence 45789999999999999999988753 3555543
No 213
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.58 E-value=0.014 Score=57.08 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
...++++|+||+||||+|+.++....
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35688999999999999999998764
No 214
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.58 E-value=0.2 Score=50.77 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=26.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC---CCccEEEecc
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH---PEKRYILLGT 300 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~---~~~~~~~ls~ 300 (435)
..+++++|.||+||||||..++... .+..+..+|.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 5799999999999999999887542 1234566665
No 215
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.57 E-value=0.018 Score=51.83 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
+.+++++|+||+||||+|+.+++..
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3588999999999999999998765
No 216
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.56 E-value=0.018 Score=52.74 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=26.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D 301 (435)
.++++++|.|||||||++.+++... .+...+.++.+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 5799999999999999998886532 12235666654
No 217
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.53 E-value=0.022 Score=56.52 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=28.6
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D 301 (435)
...++++|+|++||||||+++.++..+. +..+.+.+.|
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D 194 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD 194 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccc
Confidence 3578999999999999999999986532 2235555555
No 218
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=94.48 E-value=0.023 Score=55.84 Aligned_cols=28 Identities=25% Similarity=0.022 Sum_probs=24.1
Q ss_pred ceEEEEEccCCCChhHHH-HHHHhhCCCc
Q 013831 266 CEVMMMVGLPASGKTTWA-EKWVKDHPEK 293 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A-~~l~~~~~~~ 293 (435)
..+|.+-|.-||||||.+ +.+.+.++..
T Consensus 12 ~~~I~iEG~~GaGKTT~~~~~L~~~l~~~ 40 (341)
T 1osn_A 12 VLRIYLDGAYGIGKTTAAEEFLHHFAITP 40 (341)
T ss_dssp EEEEEEEESSSSCTTHHHHHHHHTTTTSG
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHhhC
Confidence 568889999999999999 9998887643
No 219
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.47 E-value=0.034 Score=52.24 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=26.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEe
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILL 298 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~l 298 (435)
...-++++|+||+||||+|+.++..... .++.+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~-~~~~i 95 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNF-PFIKI 95 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTC-SEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCC-CEEEE
Confidence 3567899999999999999999987643 35555
No 220
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.47 E-value=0.025 Score=57.58 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=26.9
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~ 300 (435)
.-|+|+|+||+||||+|+.+++.++. .++.++.
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~-~~~~v~~ 83 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANA-PFIKVEA 83 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC-CEEEEEG
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCC-Cceeecc
Confidence 45889999999999999999998863 3566654
No 221
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.36 E-value=0.024 Score=59.37 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=27.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~ 300 (435)
...++++|+||+||||+|+.++..++. .+..++.
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~i~~ 141 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGR-KFVRISL 141 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTC-EEEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC-CeEEEEe
Confidence 568999999999999999999987653 2445543
No 222
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.27 E-value=0.025 Score=51.27 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=20.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~ 289 (435)
+-+++++|.||||||++|..+...
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Confidence 458899999999999999887543
No 223
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.26 E-value=0.071 Score=55.01 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=30.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLIL 304 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir 304 (435)
+.-+++.|+||+|||++|+.++.... ..++.++...+.
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~-~~fv~vn~~~l~ 275 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETG-AFFFLINGPEIM 275 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCS-SEEEEEEHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhC-CCEEEEEchHhh
Confidence 34588999999999999999998875 447777765543
No 224
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.25 E-value=0.022 Score=50.65 Aligned_cols=22 Identities=32% Similarity=0.512 Sum_probs=20.1
Q ss_pred EEEEccCCCChhHHHHHHHhhC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~ 290 (435)
++++|+||+||||+|+.+++.+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998764
No 225
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.23 E-value=0.019 Score=51.61 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=21.0
Q ss_pred eEEEEEccCCCChhHHHHHHHhhC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~ 290 (435)
+++.++|++||||||+.+.++..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 468899999999999999988654
No 226
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.23 E-value=0.027 Score=53.23 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.7
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
..++++++|++||||||+.+.++...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 35799999999999999999988654
No 227
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.19 E-value=0.017 Score=52.73 Aligned_cols=27 Identities=11% Similarity=0.262 Sum_probs=23.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE 292 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~ 292 (435)
...+++.|+||+||||+|..+++.+.+
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346899999999999999999988754
No 228
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.17 E-value=0.024 Score=56.60 Aligned_cols=28 Identities=25% Similarity=0.157 Sum_probs=24.6
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE 292 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~ 292 (435)
..++++++|+|||||||+++.++....+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g 195 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCGG 195 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 3579999999999999999999987654
No 229
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.16 E-value=0.025 Score=58.61 Aligned_cols=38 Identities=32% Similarity=0.322 Sum_probs=27.5
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D 301 (435)
..+.+|+++|+||+||||++.+|+..+. +++..+++.|
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 4578999999999999999999985432 2336666665
No 230
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.13 E-value=0.028 Score=54.79 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=28.9
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D 301 (435)
..+++|+++|++|+||||++..++..+. ++++..+..|
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3478999999999999999999875432 3346666655
No 231
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.07 E-value=0.037 Score=51.67 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=25.9
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCC--ccEEEec
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLG 299 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls 299 (435)
.-+++.|.||+|||++|+.++...+. ..++.++
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~ 64 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence 34788999999999999999987642 2366665
No 232
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.06 E-value=0.013 Score=51.76 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
++++.++|.+||||||+++.+...+
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999999998764
No 233
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.05 E-value=0.026 Score=52.39 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++.-.+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 58899999999999999999987654
No 234
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.04 E-value=0.036 Score=54.79 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=25.5
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls 299 (435)
.-++++|+||+||||+|+.+++.+.. .++.++
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~-~~~~~~ 104 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDI-PIAISD 104 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC-CEEEEE
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCC-CEEEec
Confidence 45789999999999999999998752 355554
No 235
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.02 E-value=0.026 Score=54.64 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=23.8
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..+++.++|++||||||+++.++..+.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 357899999999999999999988764
No 236
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.00 E-value=0.024 Score=53.68 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.5
Q ss_pred cceEEEEEccCCCChhHHHHHHHh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVK 288 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~ 288 (435)
..++++++|.|||||||++..++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999999874
No 237
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.99 E-value=0.029 Score=57.84 Aligned_cols=27 Identities=37% Similarity=0.434 Sum_probs=23.5
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhC
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
...++++|+|++||||||+++.++..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 357899999999999999999998653
No 238
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.94 E-value=0.2 Score=53.02 Aligned_cols=52 Identities=6% Similarity=0.007 Sum_probs=35.6
Q ss_pred HHhcCCCeEEEe--CCCcCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHh
Q 013831 339 RASRTPRNFIID--QTNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKR 390 (435)
Q Consensus 339 ~al~~g~~vIlD--~Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~ee~~~R~~~R 390 (435)
..+.....+|+| .+++++..+..+++.+.... ..+++++.-+-....+...|
T Consensus 235 aL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~dr 290 (608)
T 3j16_B 235 SCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDF 290 (608)
T ss_dssp HHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSE
T ss_pred HHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 335678899999 58899999998888877643 46777776542333444444
No 239
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.93 E-value=0.031 Score=49.64 Aligned_cols=32 Identities=13% Similarity=0.130 Sum_probs=25.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D 301 (435)
..-++++|.+|+||||+|..+.+.- +..++.|
T Consensus 16 G~gvli~G~SGaGKStlal~L~~rG----~~lvaDD 47 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDRG----HQLVCDD 47 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHTT----CEEEESS
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcC----CeEecCC
Confidence 4578999999999999999998852 4455544
No 240
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.90 E-value=0.031 Score=49.77 Aligned_cols=24 Identities=29% Similarity=0.244 Sum_probs=20.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~ 289 (435)
..+++++|+|||||||.+.+++.+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999766654
No 241
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.80 E-value=0.034 Score=56.48 Aligned_cols=38 Identities=29% Similarity=0.382 Sum_probs=29.4
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC---CccEEEeccH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN 301 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~---~~~~~~ls~D 301 (435)
..+.+|+++|++|+||||.+.+|+..+. ++++..++.|
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 3578999999999999999999875432 3456777766
No 242
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.76 E-value=0.039 Score=54.40 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=28.0
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D 301 (435)
...+|+++|.||+||||++.+++..+ .++++.++..|
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 46789999999999999999997653 22345666665
No 243
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.76 E-value=0.083 Score=57.40 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.3
Q ss_pred EEEEccCCCChhHHHHHHHhhC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~ 290 (435)
++++|+||+||||+|+.++...
T Consensus 204 vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 204 PVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp EEEESCTTTTTHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999874
No 244
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.75 E-value=0.084 Score=57.69 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=30.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILE 305 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~ 305 (435)
++=++|.|+||+|||.+|+.++.+... .++.++..++..
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~-~f~~v~~~~l~s 549 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQA-NFISIKGPELLT 549 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTC-EEEECCHHHHHT
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCC-ceEEeccchhhc
Confidence 345789999999999999999998863 467776665543
No 245
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.74 E-value=0.016 Score=54.22 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.0
Q ss_pred EEEEccCCCChhHHHHHHHhhCC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~ 291 (435)
++++|+||+||||+|+.++....
T Consensus 47 vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 78999999999999999998764
No 246
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.73 E-value=0.16 Score=55.99 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.4
Q ss_pred EEEEEccCCCChhHHHHHHHhhC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~ 290 (435)
-++++|+||+||||+|+.++...
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHH
Confidence 36889999999999999998765
No 247
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.69 E-value=0.026 Score=54.70 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=21.6
Q ss_pred EEEEccCCCChhHHHHHHHhhCC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~ 291 (435)
+++.|+||+|||++|+.++..++
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 88999999999999999998876
No 248
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.69 E-value=0.036 Score=54.81 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
...|+++|+|||||||+++.++..+
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3458899999999999999988754
No 249
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.69 E-value=0.032 Score=51.37 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++...+
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 57899999999999999999987654
No 250
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.69 E-value=0.043 Score=53.05 Aligned_cols=42 Identities=12% Similarity=0.022 Sum_probs=30.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC---CccEEEeccHHHHHHh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTNLILEQM 307 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~---~~~~~~ls~D~ir~~~ 307 (435)
..-+++.|+||+|||++|+.++.... +..++.++...+...+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l 196 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDV 196 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHH
Confidence 35788999999999999999876432 2335556666665554
No 251
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.68 E-value=0.035 Score=52.85 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=25.7
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCC--ccEEEecc
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPE--KRYILLGT 300 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls~ 300 (435)
..++++|+||+||||+|+.++..+.. ..++.++.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~ 83 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 83 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeec
Confidence 57899999999999999999886531 22555543
No 252
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.65 E-value=0.031 Score=51.89 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
.+++.++|++||||||+.+.++...
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5789999999999999999998765
No 253
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.60 E-value=0.037 Score=51.55 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=22.5
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+++.++|++||||||+.+.++...+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7899999999999999999987653
No 254
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.59 E-value=0.049 Score=51.31 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=26.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEe
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILL 298 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~l 298 (435)
.+++.++|++||||||+.+.++...+..+-+.+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i 78 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKI 78 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCeEEEE
Confidence 578999999999999999999876543334444
No 255
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.55 E-value=0.042 Score=49.53 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
....|+++|.+||||||++.+++...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999998763
No 256
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.54 E-value=0.035 Score=50.61 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHhh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~ 289 (435)
.+++.++|++||||||+.+.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 578899999999999999998764
No 257
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.49 E-value=0.036 Score=50.71 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=20.9
Q ss_pred cceEEEEEccCCCChhHHHHHHHh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVK 288 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~ 288 (435)
...+++++|.||+||||||.+++.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 357999999999999999988753
No 258
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.45 E-value=0.042 Score=51.16 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=23.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..+++.++|++||||||+.+.++...+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 358999999999999999999987653
No 259
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.35 E-value=0.04 Score=51.99 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=23.5
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..+++.++|++||||||+.+.++.-.+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 357899999999999999999987654
No 260
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.34 E-value=0.056 Score=50.12 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=28.2
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC-CccEEEeccH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLGTN 301 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls~D 301 (435)
....+++++|.+|+||||++..++..+. +.+..+++.|
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3467899999999999999999985432 2335666655
No 261
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.33 E-value=0.042 Score=52.94 Aligned_cols=36 Identities=33% Similarity=0.326 Sum_probs=28.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D 301 (435)
+++++++|.+|+||||++..++..+. +.+..+++.|
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 78999999999999999999885432 2346666666
No 262
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.33 E-value=0.044 Score=56.35 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=26.6
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D 301 (435)
+=++++|+||+||||+|+.++.+.+ ..++.++..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~-~~f~~is~~ 83 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEAN-VPFFHISGS 83 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHT-CCEEEEEGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC-CCeeeCCHH
Confidence 3488999999999999999998765 236666543
No 263
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.28 E-value=0.042 Score=51.96 Aligned_cols=50 Identities=12% Similarity=0.192 Sum_probs=32.7
Q ss_pred hcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHh
Q 013831 341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKR 390 (435)
Q Consensus 341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~ee~~~R~~~R 390 (435)
+.....+|+|- +++++..|...++.+.+.. ..+++++.-+-+...+...|
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~ 228 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDR 228 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCE
Confidence 56677889995 7788988888887776542 46676665442233444444
No 264
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.27 E-value=0.042 Score=48.62 Aligned_cols=24 Identities=13% Similarity=0.386 Sum_probs=21.2
Q ss_pred eEEEEEccCCCChhHHHHHHHhhC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~ 290 (435)
-.++++|.+||||||+.+.+....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999998754
No 265
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.25 E-value=0.042 Score=46.60 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3788999999999999999864
No 266
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.24 E-value=0.058 Score=55.91 Aligned_cols=33 Identities=24% Similarity=0.218 Sum_probs=27.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls 299 (435)
+..++++|+||+||||+|+.+++.++ ..++.++
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~-~~~i~in 109 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG-YDILEQN 109 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT-CEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC-CCEEEEe
Confidence 46899999999999999999999885 2345554
No 267
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.23 E-value=0.056 Score=55.93 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=25.8
Q ss_pred EEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~~~~~~~ls~ 300 (435)
++++|+||+||||+|+.++.... ..++.++.
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~-~~~i~i~g 97 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR-VPFITASG 97 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT-CCEEEEEG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-CCEEEEeh
Confidence 89999999999999999998875 33666654
No 268
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.22 E-value=0.04 Score=52.50 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++...+
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 57899999999999999999987654
No 269
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.22 E-value=0.043 Score=46.26 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.8
Q ss_pred EEEEccCCCChhHHHHHHHhhC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~ 290 (435)
|+++|.+|+||||+..++....
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7889999999999999998654
No 270
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.21 E-value=0.04 Score=52.18 Aligned_cols=48 Identities=23% Similarity=0.315 Sum_probs=33.0
Q ss_pred CCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECChHHHHHHHHHh
Q 013831 343 TPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKPEDLKIRSVKR 390 (435)
Q Consensus 343 ~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~ee~~~R~~~R 390 (435)
..+.+|+|- +++++..+..+++.+.+.. ..+++++.-+-+...+...|
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~ 217 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADR 217 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSE
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCE
Confidence 677899995 7889999998888877642 46777775542333444444
No 271
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.20 E-value=0.072 Score=52.22 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=22.7
Q ss_pred cceEEEEEccCCCChhHHHHHHHhh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~ 289 (435)
...+++++|.|||||||+|..++..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999875
No 272
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.19 E-value=0.043 Score=46.14 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=19.2
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.+|+||||++.++...
T Consensus 6 i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999865
No 273
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.16 E-value=0.036 Score=56.50 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.3
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.-+++.|+||+||||+|+.++..++
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhC
Confidence 4588999999999999999998765
No 274
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.15 E-value=0.044 Score=50.57 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|+.||||||+.+.++...+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 57899999999999999999987654
No 275
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.15 E-value=0.045 Score=51.95 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=30.2
Q ss_pred HhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh
Q 013831 340 ASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP 380 (435)
Q Consensus 340 al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~ 380 (435)
.+.....+|+|- +++++..+..+++.+.... ..++|++.-+
T Consensus 171 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd 216 (271)
T 2ixe_A 171 LIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ 216 (271)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSC
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 356778999995 7889999998888887652 4567666443
No 276
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.14 E-value=0.044 Score=51.24 Aligned_cols=26 Identities=31% Similarity=0.262 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++...+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 57899999999999999999987654
No 277
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.12 E-value=0.039 Score=53.87 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.7
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
.+..++++|+||+||||+|+.+++..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998765
No 278
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.09 E-value=0.039 Score=56.07 Aligned_cols=38 Identities=32% Similarity=0.429 Sum_probs=29.0
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D 301 (435)
..+.+|+++|+||+||||++.+++..+. +.++.+++.|
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 3467999999999999999999886542 1236677766
No 279
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.05 E-value=0.046 Score=50.79 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++...+
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57899999999999999999987653
No 280
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.04 E-value=0.046 Score=51.37 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++...+
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57899999999999999999987654
No 281
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.04 E-value=0.048 Score=46.02 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=19.1
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.||+||||+..++...
T Consensus 6 i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999854
No 282
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.02 E-value=0.054 Score=53.83 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.7
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
...+++++|++||||||+.+.++...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35789999999999999999998654
No 283
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.99 E-value=0.051 Score=51.45 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~ 289 (435)
.+++.++|++||||||+.+.++..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999999875
No 284
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=92.98 E-value=0.033 Score=53.86 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.3
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPE 292 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~ 292 (435)
-+++.|+||+|||++|+.++..++.
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4789999999999999999988763
No 285
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.97 E-value=0.054 Score=53.09 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=22.8
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhh
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~ 289 (435)
....++.++|.|||||||+.+.+...
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34689999999999999999999854
No 286
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.97 E-value=0.041 Score=50.41 Aligned_cols=34 Identities=24% Similarity=0.135 Sum_probs=26.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEec
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG 299 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls 299 (435)
.+++.++|++||||||+.+.++...+ ..+-+.++
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~ 69 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYN 69 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEEC
Confidence 57889999999999999999987654 23344443
No 287
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.96 E-value=0.05 Score=50.92 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~ 289 (435)
.+++.++|++||||||+.+.++..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999999885
No 288
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.95 E-value=0.05 Score=51.18 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++...+
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 57899999999999999999987654
No 289
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.95 E-value=0.05 Score=45.94 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.1
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.+|+||||+..++...
T Consensus 7 i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 788999999999999999864
No 290
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.95 E-value=0.046 Score=53.17 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=20.4
Q ss_pred EEEEccCCCChhHHHHHHHhhC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~ 290 (435)
+++.|+||+||||+|+.+++.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999874
No 291
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.94 E-value=0.044 Score=53.46 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.7
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
.+..++++|+||+||||+++.++...
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35688999999999999999998765
No 292
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.90 E-value=0.05 Score=48.25 Aligned_cols=22 Identities=14% Similarity=0.474 Sum_probs=19.9
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
-++++|.+|+||||+.+.+...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 293
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.88 E-value=0.064 Score=48.46 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
...|+++|.+|+||||++.+++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4677888999999999999998763
No 294
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.84 E-value=0.053 Score=45.97 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=19.0
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.+|+||||+..++...
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 788999999999999999754
No 295
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.82 E-value=0.05 Score=52.69 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEccCCCChhHHHHHHHhhC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~ 290 (435)
+++.|+||+||||+|+.+++.+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998764
No 296
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.81 E-value=0.053 Score=46.02 Aligned_cols=23 Identities=22% Similarity=0.396 Sum_probs=20.1
Q ss_pred EEEEEccCCCChhHHHHHHHhhC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~ 290 (435)
=|+++|.+|+||||+.+++....
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37889999999999999998654
No 297
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.80 E-value=0.054 Score=51.19 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++.-.+
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 57899999999999999999987654
No 298
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.80 E-value=0.052 Score=53.45 Aligned_cols=26 Identities=23% Similarity=0.127 Sum_probs=23.5
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
..+++.++|+|||||||++..++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999998765
No 299
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.77 E-value=0.062 Score=52.88 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.2
Q ss_pred cceEEEEEccCCCChhHHHHHHHhh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~ 289 (435)
...+|.++|.|||||||+...+...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999864
No 300
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.76 E-value=0.069 Score=51.85 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=28.1
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC--C------CccEEEeccH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH--P------EKRYILLGTN 301 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~--~------~~~~~~ls~D 301 (435)
...+++++|.|||||||+|..++... + +...+.++++
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 35799999999999999999998653 2 2345666654
No 301
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.76 E-value=0.054 Score=46.55 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=20.4
Q ss_pred eEEEEEccCCCChhHHHHHHHhhC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~ 290 (435)
-=|+++|.+|+||||+..++....
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 347889999999999999998653
No 302
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.73 E-value=0.16 Score=58.73 Aligned_cols=110 Identities=11% Similarity=0.184 Sum_probs=60.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEec--------cHHHHHHhccC--------CCccCC-CCh---HHHHH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILLG--------TNLILEQMKVP--------GLLRKH-NYS---ERFQC 324 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~ls--------~D~ir~~~~~~--------G~~~~~-~~~---~~~~~ 324 (435)
.+.+.++|++||||||+++.+.+.++. .+-+.++ .+.+|+.+... |..+++ .+. ...++
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~ 523 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREE 523 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHH
T ss_pred CcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHH
Confidence 578999999999999999999987652 2334443 24555554421 111110 010 01233
Q ss_pred HHHHHHHH-HHHHHHHHhcCCCeEEEe--CCCcCHHHHHHHHHHHhc-CCcEEEEEE
Q 013831 325 LMGRANAI-FDVLLSRASRTPRNFIID--QTNVFKSARKRKLRLFVN-FRKIAVVVF 377 (435)
Q Consensus 325 ~~~~~~~~-~~~ll~~al~~g~~vIlD--~Tn~~~~~R~~~~~~~~~-~~~~~vv~l 377 (435)
+.+.++.+ +.+.+ ..+..|.+.+|- ..+++-.+|++ +..++. +.+-.++.+
T Consensus 524 v~~a~~~a~l~~~i-~~lp~G~~T~vGe~G~~LSGGQkQR-iaiARAl~~~~~IliL 578 (1321)
T 4f4c_A 524 MVAACKMANAEKFI-KTLPNGYNTLVGDRGTQLSGGQKQR-IAIARALVRNPKILLL 578 (1321)
T ss_dssp HHHHHHHTTCHHHH-HHSTTTTSSEESSSSCCCCHHHHHH-HHHHHHHTTCCSEEEE
T ss_pred HHHHHHHccchhHH-HcCCCCCccEecCCCCCCCHHHHHH-HHHHHHHccCCCEEEE
Confidence 33333221 22333 234667665554 37888888886 666665 444444444
No 303
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.72 E-value=0.056 Score=46.41 Aligned_cols=23 Identities=17% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHHHHHhhC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~ 290 (435)
=|+++|.||+||||+..++....
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998653
No 304
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.69 E-value=0.055 Score=45.91 Aligned_cols=21 Identities=24% Similarity=0.577 Sum_probs=19.1
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.+|+||||+..++...
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 788999999999999999854
No 305
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.69 E-value=0.055 Score=51.60 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++...+
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 57899999999999999999987653
No 306
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.69 E-value=0.056 Score=45.90 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=19.1
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.+|+||||+..++...
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 788999999999999999864
No 307
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.68 E-value=0.059 Score=51.74 Aligned_cols=37 Identities=35% Similarity=0.443 Sum_probs=27.7
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D 301 (435)
..+++.++|.+|+||||++..++..+. +.++..++.|
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 468899999999999999999875432 2345566554
No 308
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.67 E-value=0.056 Score=50.64 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++...+
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 57899999999999999999987654
No 309
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.67 E-value=0.063 Score=52.38 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~ 289 (435)
..++++.|+||+||||+|..++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 457789999999999999999875
No 310
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.67 E-value=0.056 Score=46.20 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.||+||||+.+++...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 3789999999999999999754
No 311
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.65 E-value=0.057 Score=46.33 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.3
Q ss_pred eEEEEEccCCCChhHHHHHHHhh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~ 289 (435)
..|+++|.||+||||+.+++...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999864
No 312
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.64 E-value=0.057 Score=45.92 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.6
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3788999999999999999854
No 313
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.63 E-value=0.058 Score=45.66 Aligned_cols=21 Identities=19% Similarity=0.480 Sum_probs=19.0
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.+|+||||+.+++...
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 788999999999999999864
No 314
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.61 E-value=0.058 Score=52.84 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=22.3
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..++++|+||+||||+++.++....
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHh
Confidence 3889999999999999999988764
No 315
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.61 E-value=0.063 Score=46.10 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.4
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.||+||||+..++...
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3789999999999999999754
No 316
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.60 E-value=0.057 Score=53.31 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+.+.++|.+||||||+++.++..++
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998765
No 317
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.53 E-value=0.06 Score=45.79 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=18.3
Q ss_pred EEEEccCCCChhHHHHHHHh
Q 013831 269 MMMVGLPASGKTTWAEKWVK 288 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~ 288 (435)
|+++|.||+||||+..++..
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999974
No 318
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.52 E-value=0.085 Score=57.83 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=28.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D 301 (435)
.+-++++|+||+||||+|+.++...+. .++.++..
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~~-~~i~v~~~ 272 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETGA-FFFLINGP 272 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTTC-EEEEEEHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCC-cEEEEEch
Confidence 567899999999999999999988763 35566543
No 319
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.51 E-value=0.06 Score=50.50 Aligned_cols=51 Identities=10% Similarity=0.247 Sum_probs=33.3
Q ss_pred HHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 013831 339 RASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 339 ~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R 390 (435)
..+.+...+|+|- +++++..|...++.+.... ..+++++.-+ +.+ .+...|
T Consensus 142 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~-~~~~d~ 198 (253)
T 2nq2_C 142 AIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV-VAIANK 198 (253)
T ss_dssp HHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHH-HHHCSE
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HHhCCE
Confidence 3357788999996 7799999998888776542 3566666433 443 344334
No 320
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.51 E-value=0.057 Score=45.78 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=18.6
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.||+||||+.+++...
T Consensus 5 i~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHcCc
Confidence 688999999999999999643
No 321
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.50 E-value=0.067 Score=52.91 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=27.3
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D 301 (435)
...++++.|+|||||||++..++.... +..++.++.+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 358999999999999999999886531 2235556553
No 322
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.49 E-value=0.061 Score=47.09 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.1
Q ss_pred eEEEEEccCCCChhHHHHHHHhhC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~ 290 (435)
.-|+++|.+|+||||+..++....
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999998764
No 323
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.49 E-value=0.067 Score=51.76 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=26.9
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEecc
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGT 300 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~ 300 (435)
...+++++|.||+||||||..++... .+.....+|.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 36899999999999999999987532 2233556654
No 324
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.48 E-value=0.08 Score=50.02 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=28.8
Q ss_pred HhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCCcEEEEEEC
Q 013831 340 ASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFRKIAVVVFP 378 (435)
Q Consensus 340 al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~~~~vv~l~ 378 (435)
.+.....+|+|- +++++..|...++.+..+.. +++++.
T Consensus 143 L~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~-tviivt 182 (263)
T 2pjz_A 143 LASQPEIVGLDEPFENVDAARRHVISRYIKEYGK-EGILVT 182 (263)
T ss_dssp HHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS-EEEEEE
T ss_pred HHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC-cEEEEE
Confidence 356778899995 77889999988888887655 666553
No 325
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.48 E-value=0.063 Score=45.47 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 326
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.47 E-value=0.054 Score=47.37 Aligned_cols=21 Identities=43% Similarity=0.629 Sum_probs=19.1
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.||+||||+.+++...
T Consensus 5 v~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999863
No 327
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=92.41 E-value=0.5 Score=45.27 Aligned_cols=25 Identities=12% Similarity=0.337 Sum_probs=20.9
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE 292 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~ 292 (435)
..++|+++|+ ||+|+.++|.+.++.
T Consensus 104 ~~r~ivl~GP---gK~tl~~~L~~~~~~ 128 (295)
T 1kjw_A 104 YARPIIILGP---TKDRANDDLLSEFPD 128 (295)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCTT
T ss_pred CCCEEEEECC---CHHHHHHHHHhhCcc
Confidence 3578899997 799999999988763
No 328
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.38 E-value=0.065 Score=45.89 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=20.4
Q ss_pred eEEEEEccCCCChhHHHHHHHhhC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~ 290 (435)
-=|+++|.+|+||||+..++....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 347889999999999999998643
No 329
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.37 E-value=0.065 Score=45.99 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=20.1
Q ss_pred eEEEEEccCCCChhHHHHHHHhh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~ 289 (435)
.-|+++|.+|+||||+..++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34788999999999999999865
No 330
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.36 E-value=0.087 Score=51.57 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.4
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhh
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~ 289 (435)
....+|.++|.||+||||++..++..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 34688899999999999999999754
No 331
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.35 E-value=0.065 Score=46.77 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
-|+++|.+|+||||++.++...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4788999999999999999865
No 332
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.34 E-value=0.044 Score=48.77 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
...|+++|.+||||||+.+.+....
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999887543
No 333
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.32 E-value=0.07 Score=46.60 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.6
Q ss_pred EEEEEccCCCChhHHHHHHHhhC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~ 290 (435)
+.+++|..||||||+.+.+.-.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 88999999999999999987654
No 334
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.25 E-value=0.068 Score=46.38 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.6
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999999999999999864
No 335
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.25 E-value=0.14 Score=45.88 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=25.7
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEe
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILL 298 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~l 298 (435)
..++++++|.+||||||.+-+++.+. .+.++.++
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 35799999999999999988887654 23345555
No 336
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.24 E-value=0.07 Score=47.81 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.0
Q ss_pred eEEEEEccCCCChhHHHHHHHhhC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~ 290 (435)
.-|+++|.+|+||||++.++....
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999998764
No 337
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.23 E-value=0.063 Score=50.87 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHHHHHhhC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~ 290 (435)
.+.++|++||||||+.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47889999999999999998653
No 338
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.23 E-value=0.079 Score=52.35 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
..+++++|++||||||+.+.++...
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4599999999999999999887654
No 339
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.22 E-value=0.055 Score=52.60 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=19.6
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
++++|+||+||||+++.++..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999884
No 340
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.22 E-value=0.078 Score=45.94 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.5
Q ss_pred eEEEEEccCCCChhHHHHHHHhh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~ 289 (435)
.-|+++|.||+||||+..++...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999865
No 341
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.21 E-value=0.054 Score=52.92 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=26.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEe
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILL 298 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~l 298 (435)
.++++++|++||||||+.+.++...+. .+.+.+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i 204 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 204 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEE
Confidence 468999999999999999999987642 334444
No 342
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.20 E-value=0.084 Score=45.27 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~ 289 (435)
..-|+++|.+|+||||+..++...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446889999999999999999754
No 343
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.20 E-value=0.064 Score=52.84 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=27.0
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D 301 (435)
..+++++.|.|||||||+|..++... .+..+..++.+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 35799999999999999999987542 12235566553
No 344
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.18 E-value=0.07 Score=45.95 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4788999999999999999864
No 345
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.16 E-value=0.076 Score=51.17 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=22.8
Q ss_pred CCCcceEEEEEccCCCChhHHHHHHHhh
Q 013831 262 NMKDCEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 262 ~~~~~~liim~GlPGSGKST~A~~l~~~ 289 (435)
.+...-.|.++|.||+||||+..++...
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3334568899999999999999999864
No 346
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.16 E-value=0.067 Score=46.82 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=20.2
Q ss_pred eEEEEEccCCCChhHHHHHHHhh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~ 289 (435)
.-|+++|.+|+||||+..++...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999865
No 347
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.13 E-value=0.12 Score=45.31 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHHHHHhhC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~ 290 (435)
=|+++|.+|+||||+..++....
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999998643
No 348
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.12 E-value=0.073 Score=45.25 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.0
Q ss_pred eEEEEEccCCCChhHHHHHHHhh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~ 289 (435)
--|+++|.+|+||||+..++...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 34789999999999999999754
No 349
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.11 E-value=0.072 Score=46.49 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.8
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999865
No 350
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.11 E-value=0.073 Score=46.10 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=19.2
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.+|+||||+..++...
T Consensus 7 i~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999864
No 351
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.10 E-value=0.072 Score=46.33 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~ 289 (435)
..-|+++|.+|+||||+.+++...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999999864
No 352
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.05 E-value=0.075 Score=45.85 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4788999999999999999854
No 353
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=92.04 E-value=0.26 Score=50.85 Aligned_cols=108 Identities=12% Similarity=-0.036 Sum_probs=61.2
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCC-ccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGL-LRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~-~~~~~~~~~~~~~~~~~~~~~~~ll~~al~ 342 (435)
....+|++-|.-||||+|.++.+...+....+.+++.. -++. .....| +.+.....-.
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~-------~Pt~~E~~~~y--------------l~R~~~~lP~ 99 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFL-------RPSDEELERPP--------------QWRFWRRLPP 99 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECS-------SCCHHHHTSCT--------------THHHHHHCCC
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeC-------CCChhhccCCh--------------hhhHHHhCCC
Confidence 45789999999999999999999998875555444321 0110 000111 1112333456
Q ss_pred CCCeEEEeCCCcCH------------HHHHHHHHHHhcC-------C-cEEEEEECCh-HHHHHHHHHhhh
Q 013831 343 TPRNFIIDQTNVFK------------SARKRKLRLFVNF-------R-KIAVVVFPKP-EDLKIRSVKRFK 392 (435)
Q Consensus 343 ~g~~vIlD~Tn~~~------------~~R~~~~~~~~~~-------~-~~~vv~l~~~-ee~~~R~~~R~~ 392 (435)
.|..+|+|-..+.. ....+.++.+..| + .+..++++.+ ++..+|+..|..
T Consensus 100 ~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~ 170 (500)
T 3czp_A 100 KGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEK 170 (500)
T ss_dssp TTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-----
T ss_pred CCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhc
Confidence 89999999764332 3222333333222 2 3445678876 889999998853
No 354
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.03 E-value=0.077 Score=53.75 Aligned_cols=37 Identities=35% Similarity=0.443 Sum_probs=28.5
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC--CccEEEeccH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILLGTN 301 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~ls~D 301 (435)
.+++++++|++||||||++..++..+. +.++..+..|
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 478999999999999999999986542 2346666665
No 355
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.03 E-value=0.26 Score=50.76 Aligned_cols=38 Identities=16% Similarity=0.080 Sum_probs=28.5
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCC---CccEEEeccH
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHP---EKRYILLGTN 301 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~---~~~~~~ls~D 301 (435)
....++++.|.||+||||||..++.... +..+..+|.+
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 3467999999999999999999875432 2346666653
No 356
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.03 E-value=0.067 Score=53.74 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.7
Q ss_pred cceEEEEEccCCCChhHHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWV 287 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~ 287 (435)
..+++.++|.|||||||++..++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHH
Confidence 35799999999999999999775
No 357
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.02 E-value=0.32 Score=52.60 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=20.9
Q ss_pred eEEEEEccCCCChhHHHHHHHhhC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~ 290 (435)
.-++++|.||+||||+|+.++...
T Consensus 208 ~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHHH
Confidence 446899999999999999998764
No 358
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.01 E-value=0.081 Score=44.71 Aligned_cols=21 Identities=48% Similarity=0.545 Sum_probs=19.0
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.+|+||||+..++...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999754
No 359
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.01 E-value=0.051 Score=52.58 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+++.++..++
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCC
Confidence 57899999999999999999987654
No 360
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.00 E-value=0.075 Score=46.29 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.6
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.||+||||+.+++...
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3788999999999999999865
No 361
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.97 E-value=0.081 Score=53.46 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..+++++|++||||||+.+.++...+
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 57999999999999999999887653
No 362
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.95 E-value=0.078 Score=45.57 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHHHHHhhC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~ 290 (435)
=|+++|.+|+||||+..++....
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999997643
No 363
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.95 E-value=0.077 Score=45.96 Aligned_cols=22 Identities=14% Similarity=0.493 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3788999999999999999754
No 364
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.95 E-value=0.075 Score=50.66 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEEccCCCChhHHHHHHHhhC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~ 290 (435)
+++.|+||+||||+|+.+++.+
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999998774
No 365
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.92 E-value=0.077 Score=46.05 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=19.0
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.+|+||||+..++...
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 688999999999999999864
No 366
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.90 E-value=0.079 Score=46.43 Aligned_cols=22 Identities=18% Similarity=0.507 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 367
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.89 E-value=0.08 Score=45.31 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4778899999999999999854
No 368
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.85 E-value=0.076 Score=45.55 Aligned_cols=22 Identities=14% Similarity=0.444 Sum_probs=19.3
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3788999999999999999754
No 369
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.84 E-value=0.091 Score=45.63 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.3
Q ss_pred eEEEEEccCCCChhHHHHHHHhh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~ 289 (435)
--|+++|.+|+||||+..++...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999865
No 370
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.84 E-value=0.09 Score=50.53 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=26.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls 299 (435)
+.++++.|+||+||||+|+.+++.+. ..++.++
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~-~~~~~i~ 80 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVN-ADMMFVN 80 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTT-EEEEEEE
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhC-CCEEEEc
Confidence 46889999999999999999999875 2345554
No 371
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.82 E-value=0.079 Score=46.14 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHHHHHhhC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~ 290 (435)
-|+++|.+|+||||+..++....
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 47789999999999999998653
No 372
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.80 E-value=0.084 Score=50.63 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=23.5
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..+++.++|+.||||||+.+.++...+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 357899999999999999999987654
No 373
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.76 E-value=0.086 Score=52.17 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=33.6
Q ss_pred hcCCCeEEEeC--CCcCHHHHHHHHHHHhcC---CcEEEEEECCh-HHHHHHHHHh
Q 013831 341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNF---RKIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~---~~~~vv~l~~~-ee~~~R~~~R 390 (435)
+...+.+++|- +++++..|..++..+.+. ...+++++.-+ +++. +...|
T Consensus 154 ~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~-~~aDr 208 (359)
T 3fvq_A 154 APDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEAL-QYADR 208 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HHCSE
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-HHCCE
Confidence 56778999995 889999998876655442 25778787655 4443 45555
No 374
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.76 E-value=0.085 Score=45.64 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.6
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4788999999999999999854
No 375
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.75 E-value=0.085 Score=45.54 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.3
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3788999999999999999754
No 376
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=91.70 E-value=0.083 Score=50.14 Aligned_cols=22 Identities=32% Similarity=0.512 Sum_probs=20.3
Q ss_pred EEEEccCCCChhHHHHHHHhhC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~ 290 (435)
++++|+||+||||+|+.+++.+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 8999999999999999998874
No 377
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.69 E-value=0.091 Score=50.73 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~ 289 (435)
...+++++|.|||||||+|..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999999864
No 378
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.69 E-value=0.099 Score=45.52 Aligned_cols=23 Identities=30% Similarity=0.255 Sum_probs=19.3
Q ss_pred EEEEccCCCChhHHHHHHHhhCC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~~ 291 (435)
|+++|.||+||||+.+.+.....
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHhhcc
Confidence 78999999999999987765543
No 379
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.69 E-value=0.089 Score=51.30 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+..++++|+||+||||+|+.+++.+.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999987653
No 380
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.65 E-value=0.095 Score=49.66 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.2
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.-+++.|+||+|||++|..++...+
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4689999999999999999998654
No 381
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=91.65 E-value=0.12 Score=51.63 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=41.3
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc--cCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL--RKHNYSERFQCLMGRANAIFDVLLSRASR 342 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~--~~~~~~~~~~~~~~~~~~~~~~ll~~al~ 342 (435)
..++|+++|++| +|+.++|.+.+|+. +.. .+ +..+ .|.. .+|.|.. ...++..++
T Consensus 231 ~~r~iVlsGPsg---~tl~~~L~~~~p~~-~~~-~t----r~pR-~gE~dG~~Y~Fv~-------------~~~V~~~~~ 287 (391)
T 3tsz_A 231 FLRPVTIFGPIA---DVAREKLAREEPDI-YQI-AK----SEPR-DAGTDQRSSGIIR-------------LHTIKQIID 287 (391)
T ss_dssp SCCCEEEESTTH---HHHHHHHHHHCTTT-EEE-CC----CCCC-CSSSCCC--CCCC-------------HHHHHHHHT
T ss_pred CCCEEEEECCCH---HHHHHHHHhhCccc-ccc-cc----CCCC-CcccCCccCCcCc-------------HHHHHHHHH
Confidence 568899999998 89999999998864 332 21 1122 2321 1333431 124555668
Q ss_pred CCCeEEEeCC
Q 013831 343 TPRNFIIDQT 352 (435)
Q Consensus 343 ~g~~vIlD~T 352 (435)
+|+++|||-.
T Consensus 288 ~Gk~~iLdId 297 (391)
T 3tsz_A 288 QDKHALLDVT 297 (391)
T ss_dssp TTCEEEECCC
T ss_pred cCCEEEEEeC
Confidence 9999999984
No 382
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.64 E-value=0.087 Score=46.45 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4788999999999999999754
No 383
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.61 E-value=0.11 Score=47.90 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=25.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC--CccEEEe
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP--EKRYILL 298 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~--~~~~~~l 298 (435)
..+++++|.|||||||.+.+++.+.. +..+.++
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 57999999999999999888776542 2335555
No 384
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.60 E-value=0.11 Score=45.49 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.0
Q ss_pred eEEEEEccCCCChhHHHHHHHhh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~ 289 (435)
-=|+++|.+|+||||+..++...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 34788999999999999999854
No 385
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=91.59 E-value=0.072 Score=55.11 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=21.6
Q ss_pred EEEEEccCCCChhHHHHHHHhhCC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~ 291 (435)
=++++|+||+|||++|+.++....
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred eeEeecCchHHHHHHHHHHHHHHh
Confidence 478999999999999999998764
No 386
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.58 E-value=0.089 Score=45.41 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=19.9
Q ss_pred eEEEEEccCCCChhHHHHHHHhh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~ 289 (435)
.-|+++|.+|+||||+..++...
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 34789999999999999999843
No 387
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.57 E-value=0.1 Score=51.81 Aligned_cols=49 Identities=12% Similarity=0.274 Sum_probs=33.1
Q ss_pred hcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 013831 341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R 390 (435)
+...+.+|+|- +++++..+..+++.+.+.. ..+++++.-+ ++ ..+...|
T Consensus 179 ~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~-~~~~aDr 233 (366)
T 3tui_C 179 ASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDV-VKRICDC 233 (366)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHH-HHHHCSE
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCE
Confidence 45677899995 7899999998888877542 4677666443 44 3444444
No 388
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=91.52 E-value=0.15 Score=52.25 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=40.7
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCc--cCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLL--RKHNYSERFQCLMGRANAIFDVLLSRAS 341 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~--~~~~~~~~~~~~~~~~~~~~~~ll~~al 341 (435)
...++|||+|++|+| +.++|.+.+|+. +.. ++- | .+ .|.. ..|.|+. ...++..+
T Consensus 222 ~~~r~iVlsGPsG~G---l~~~Ll~~~p~~-f~s-~~T--R--pR-~gE~dG~~Y~FTs-------------~~~V~~vl 278 (468)
T 3shw_A 222 GFLRPVTIFGPIADV---AREKLAREEPDI-YQI-AKS--E--PR-DAGTDQRSSGIIR-------------LHTIKQII 278 (468)
T ss_dssp SSCCCEEEESTTHHH---HHHHHHHHCTTT-EEE-CCC--B--C-----------CBCC-------------HHHHHHHH
T ss_pred CCCCEEEEECCCHHH---HHHHHHHhCCCc-eee-ecC--C--CC-CcccccccCCccc-------------HHHHHHHH
Confidence 356899999999999 999999998864 333 221 1 11 2221 2344432 12445556
Q ss_pred cCCCeEEEeCC
Q 013831 342 RTPRNFIIDQT 352 (435)
Q Consensus 342 ~~g~~vIlD~T 352 (435)
++|+++|||-.
T Consensus 279 ~~Gk~~iLdId 289 (468)
T 3shw_A 279 DQDKHALLDVT 289 (468)
T ss_dssp TTTCEEEECCC
T ss_pred HCCCeEEEEeC
Confidence 89999999984
No 389
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.50 E-value=0.092 Score=46.03 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=19.8
Q ss_pred EEEEEccCCCChhHHHHHHHhhC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~ 290 (435)
=|+++|.+|+||||+..++....
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37889999999999999987653
No 390
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.47 E-value=0.094 Score=45.71 Aligned_cols=22 Identities=18% Similarity=0.493 Sum_probs=19.8
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
-|+++|.+|+||||+..++...
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
No 391
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.45 E-value=0.095 Score=45.79 Aligned_cols=22 Identities=23% Similarity=0.581 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4788999999999999999864
No 392
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=91.44 E-value=0.061 Score=52.32 Aligned_cols=26 Identities=8% Similarity=0.097 Sum_probs=22.8
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
.+..+++.|+||+|||+.++.+++++
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998776
No 393
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.40 E-value=0.089 Score=51.97 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=27.2
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEecc
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGT 300 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~ 300 (435)
...++++.|.||+||||+|..++... .+..++.+++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 35799999999999999999887542 1223666766
No 394
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.37 E-value=0.092 Score=46.38 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHHHHHhhC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~ 290 (435)
=|+++|.+|+||||+..++....
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998643
No 395
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.36 E-value=0.098 Score=45.71 Aligned_cols=23 Identities=17% Similarity=0.432 Sum_probs=20.1
Q ss_pred EEEEEccCCCChhHHHHHHHhhC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~ 290 (435)
=|+++|.+|+||||+..++....
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998643
No 396
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.35 E-value=0.1 Score=52.08 Aligned_cols=49 Identities=10% Similarity=0.160 Sum_probs=35.4
Q ss_pred hcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 013831 341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R 390 (435)
+...+.+|+|- +++++..|..+++.+.+.. ..++|++.-+ +++. +...|
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~-~~aDr 203 (381)
T 3rlf_A 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAM-TLADK 203 (381)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHH-HHCSE
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH-HhCCE
Confidence 56788999996 8899999998887777642 4678888655 5543 44455
No 397
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.34 E-value=0.1 Score=45.73 Aligned_cols=22 Identities=23% Similarity=0.597 Sum_probs=20.0
Q ss_pred EEEEccCCCChhHHHHHHHhhC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~ 290 (435)
|+++|.+|+||||+..++....
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 7899999999999999998764
No 398
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.32 E-value=0.11 Score=45.46 Aligned_cols=24 Identities=33% Similarity=0.302 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~ 289 (435)
..-|+++|.+|+||||+..++...
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 445889999999999999999754
No 399
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.31 E-value=0.1 Score=45.64 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999754
No 400
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.31 E-value=0.099 Score=46.19 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=20.4
Q ss_pred eEEEEEccCCCChhHHHHHHHhhC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~ 290 (435)
--|+++|.+|+||||+..++....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 347889999999999999998653
No 401
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.30 E-value=0.099 Score=46.02 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
-|+++|.||+||||+.+++...
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999864
No 402
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.29 E-value=0.098 Score=45.94 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHHHHHhhC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~ 290 (435)
=|+++|.+|+||||+..++....
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37889999999999999998643
No 403
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.26 E-value=0.1 Score=51.56 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=34.3
Q ss_pred HhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 013831 340 ASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 340 al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R 390 (435)
.+...+.+++|- +++++..|..+++.+.+.. ..+++++.-+ +++ .+...|
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~-~~~adr 203 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEA-MTMASR 203 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHH-HHHCSE
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH-HHhCCE
Confidence 356778999996 7899999998887776642 4667766444 444 344444
No 404
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.25 E-value=0.15 Score=48.89 Aligned_cols=31 Identities=19% Similarity=0.532 Sum_probs=26.0
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEecc
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGT 300 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~ 300 (435)
.++++.|++|+||||+++.+++..+ ++.++.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~---~~~~~~ 62 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP---GILIDC 62 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS---EEEEEH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC---cEEEEe
Confidence 6899999999999999999998864 555543
No 405
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.23 E-value=0.1 Score=45.50 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.2
Q ss_pred eEEEEEccCCCChhHHHHHHHhh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~ 289 (435)
--|+++|.+|+||||+..++...
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999854
No 406
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.23 E-value=0.1 Score=45.66 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4788999999999999999864
No 407
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.23 E-value=0.1 Score=45.93 Aligned_cols=22 Identities=14% Similarity=0.385 Sum_probs=19.6
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3788999999999999999865
No 408
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.22 E-value=0.1 Score=46.23 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.2
Q ss_pred EEEEEccCCCChhHHHHHHHhhC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~ 290 (435)
=|+++|.+|+||||+..++....
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 47889999999999999998653
No 409
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.21 E-value=0.077 Score=45.84 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=19.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVK 288 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~ 288 (435)
.--|+++|.+|+||||+..++..
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34578999999999999999874
No 410
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.21 E-value=0.1 Score=44.84 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.4
Q ss_pred EEEEccCCCChhHHHHHHHhhC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~ 290 (435)
|+++|.+|+||||+..++....
T Consensus 11 i~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 11 CVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6789999999999999998653
No 411
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.20 E-value=0.089 Score=45.71 Aligned_cols=24 Identities=33% Similarity=0.518 Sum_probs=20.4
Q ss_pred eEEEEEccCCCChhHHHHHHHhhC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~ 290 (435)
--|+++|.||+||||+..++....
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 447889999999999999998543
No 412
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.13 E-value=0.11 Score=49.94 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=24.3
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCC--ccEEEec
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPE--KRYILLG 299 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~--~~~~~ls 299 (435)
-++++|.||+|||++|+.++...+. ..++.++
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~ 60 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHACSARSDRPLVTLN 60 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred cEEEECCCCchHHHHHHHHHHhCcccCCCeEEEe
Confidence 4788999999999999999986531 2355554
No 413
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.11 E-value=0.11 Score=51.45 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=33.8
Q ss_pred hcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 013831 341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R 390 (435)
+.+.+.+++|- +++++..|..+++.+.+.. ..+++++.-+ +++ .+...|
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adr 203 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEA-LAMADR 203 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH-HHHCSE
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH-HHhCCE
Confidence 56778999996 7899999998887776642 4667766444 444 344444
No 414
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.03 E-value=0.084 Score=45.43 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=19.3
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.||+||||+..++...
T Consensus 10 i~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 10 LGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEECCGGGCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999865
No 415
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.01 E-value=0.1 Score=45.45 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.3
Q ss_pred eEEEEEccCCCChhHHHHHHHhh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~ 289 (435)
--|+++|.||+||||+..++...
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999865
No 416
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.98 E-value=0.14 Score=44.91 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.6
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4789999999999999999864
No 417
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.97 E-value=0.1 Score=54.20 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=20.0
Q ss_pred cceEEEEEccCCCChhHHHHHH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKW 286 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l 286 (435)
..+++.++|.|||||||+++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 4689999999999999999994
No 418
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.97 E-value=0.11 Score=49.40 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.3
Q ss_pred EEEEccCCCChhHHHHHHHhhC
Q 013831 269 MMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~~ 290 (435)
+++.|+||+||||+|+.+++.+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8899999999999999998764
No 419
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.94 E-value=0.11 Score=45.87 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=20.6
Q ss_pred eEEEEEccCCCChhHHHHHHHhhC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~ 290 (435)
-=|+++|.+|+||||+..++....
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 447889999999999999998653
No 420
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.94 E-value=0.11 Score=51.23 Aligned_cols=49 Identities=12% Similarity=0.274 Sum_probs=34.4
Q ss_pred hcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 013831 341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R 390 (435)
+.+.+.+++|- +++++..|..+++.+.+.. ..+++++.-+ +++ .+...|
T Consensus 161 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adr 215 (355)
T 1z47_A 161 APRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEA-LEVADR 215 (355)
T ss_dssp TTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH-HHHCSE
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH-HHhCCE
Confidence 56778999996 8899999998887776542 4677777554 444 344444
No 421
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.89 E-value=0.11 Score=46.35 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=19.6
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999854
No 422
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.88 E-value=0.12 Score=45.42 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=19.8
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999865
No 423
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.87 E-value=0.12 Score=49.68 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=22.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.+. ...
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 4688999999999999999998 653
No 424
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.84 E-value=0.11 Score=45.95 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999999999999999754
No 425
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.82 E-value=0.11 Score=51.42 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|+||+||||+.+.++....
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 46889999999999999999986553
No 426
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.82 E-value=0.12 Score=46.39 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.8
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999865
No 427
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.80 E-value=0.12 Score=51.31 Aligned_cols=50 Identities=12% Similarity=0.152 Sum_probs=34.3
Q ss_pred HhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 013831 340 ASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 340 al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R 390 (435)
.+.+.+.+++|- +++++..|..+++.+.+.. ..+++++.-+ +++. +...|
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~-~~adr 211 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAM-TMGDR 211 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHH-HHCSE
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCE
Confidence 356778999996 7899999998888777642 4677776444 4443 44444
No 428
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.79 E-value=0.1 Score=46.24 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=18.7
Q ss_pred EEEEEccCCCChhHHHHHHHh
Q 013831 268 VMMMVGLPASGKTTWAEKWVK 288 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~ 288 (435)
-|+++|.||+||||+.+++..
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 368999999999999999974
No 429
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.76 E-value=0.11 Score=53.94 Aligned_cols=33 Identities=27% Similarity=0.224 Sum_probs=25.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCC-ccEEEe
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPE-KRYILL 298 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~-~~~~~l 298 (435)
.+.++++|++||||||+.+.++...+. .+.+.+
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giiti 293 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSI 293 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEE
Confidence 456899999999999999999887653 334443
No 430
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=90.73 E-value=1.2 Score=42.49 Aligned_cols=108 Identities=10% Similarity=0.150 Sum_probs=64.1
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGLLRKHNYSERFQCLMGRANAIFDVLLSRASRTP 344 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ll~~al~~g 344 (435)
.+.||++-|.-||||++.++.+...+....+.+++.. .+. . + +.....+.+.....-..|
T Consensus 74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~----------~Pt-----~--e---E~~~~ylwR~~~~lP~~G 133 (289)
T 3rhf_A 74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFK----------APT-----D--E---EKSHDFLWRIEKQVPAAG 133 (289)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECC----------SCC-----H--H---HHTSCTTHHHHTTCCCTT
T ss_pred CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECC----------CCC-----h--h---hhcCCHHHHHHHhCCCCC
Confidence 4678999999999999999999998875555444321 000 0 0 000011112333445789
Q ss_pred CeEEEeCCCcCHH------------HHHHHHHHHhcC------CcEEE--EEECCh-HHHHHHHHHhhh
Q 013831 345 RNFIIDQTNVFKS------------ARKRKLRLFVNF------RKIAV--VVFPKP-EDLKIRSVKRFK 392 (435)
Q Consensus 345 ~~vIlD~Tn~~~~------------~R~~~~~~~~~~------~~~~v--v~l~~~-ee~~~R~~~R~~ 392 (435)
..+|+|.+.+..- ...+.++.+..| ..+.+ ++++.+ ++..+|.++|..
T Consensus 134 ~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~ 202 (289)
T 3rhf_A 134 MVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLD 202 (289)
T ss_dssp CEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred eEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhc
Confidence 9999998765442 222223333322 12332 577776 888999999854
No 431
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.71 E-value=0.095 Score=46.46 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=18.8
Q ss_pred eEEEEEccCCCChhHHHHHHH
Q 013831 267 EVMMMVGLPASGKTTWAEKWV 287 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~ 287 (435)
--|+++|.||+||||+..++.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999995
No 432
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.70 E-value=0.12 Score=54.64 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=22.7
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+.++++|+||+||||+|+.++..++
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 5789999999999999999998775
No 433
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.67 E-value=0.11 Score=45.97 Aligned_cols=22 Identities=14% Similarity=0.533 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3788999999999999999754
No 434
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.65 E-value=0.12 Score=45.84 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.6
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4788999999999999999764
No 435
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=90.61 E-value=0.69 Score=47.68 Aligned_cols=108 Identities=15% Similarity=0.095 Sum_probs=64.7
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccHHHHHHhccCCC-ccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTNLILEQMKVPGL-LRKHNYSERFQCLMGRANAIFDVLLSRASR 342 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D~ir~~~~~~G~-~~~~~~~~~~~~~~~~~~~~~~~ll~~al~ 342 (435)
..+.||++-|.-||||+|.++.+...+....+.+++.. -++. .....|- .+.....-.
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~-------~Pt~~E~~~~yl--------------~R~~~~lP~ 356 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIA-------APTEEERAQPYL--------------WRFWRHIPA 356 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECC-------SCCHHHHTSCTT--------------HHHHTTCCC
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeC-------CCChhhhcchHH--------------HHHHHhCCC
Confidence 35788999999999999999999998875544443211 0000 0001111 112333456
Q ss_pred CCCeEEEeCCCcCH------------HHHHHHHHHHhcC-------C-cEEEEEECCh-HHHHHHHHHhhh
Q 013831 343 TPRNFIIDQTNVFK------------SARKRKLRLFVNF-------R-KIAVVVFPKP-EDLKIRSVKRFK 392 (435)
Q Consensus 343 ~g~~vIlD~Tn~~~------------~~R~~~~~~~~~~-------~-~~~vv~l~~~-ee~~~R~~~R~~ 392 (435)
.|..+|+|-+.+.. ....+.++.+..| + .+..++++.+ ++..+|...|..
T Consensus 357 ~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~ 427 (500)
T 3czp_A 357 RRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREK 427 (500)
T ss_dssp TTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred CCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhc
Confidence 89999999875543 2222223332222 2 3444677876 899999999864
No 436
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.58 E-value=0.12 Score=52.21 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.2
Q ss_pred ceE--EEEEccCCCChhHHHHHHHhh
Q 013831 266 CEV--MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 266 ~~l--iim~GlPGSGKST~A~~l~~~ 289 (435)
.++ +.++|.+||||||+.+.++..
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 467 899999999999999999764
No 437
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.56 E-value=0.12 Score=47.38 Aligned_cols=24 Identities=17% Similarity=0.291 Sum_probs=20.7
Q ss_pred eEEEEEccCCCChhHHHHHHHhhC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~ 290 (435)
.-|+++|.+|+||||+...+....
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 457899999999999999998653
No 438
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.54 E-value=0.13 Score=45.69 Aligned_cols=23 Identities=22% Similarity=0.474 Sum_probs=19.9
Q ss_pred eEEEEEccCCCChhHHHHHHHhh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~ 289 (435)
--|+++|.||+||||+..++...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34789999999999999999854
No 439
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.48 E-value=0.084 Score=45.67 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=8.9
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4788999999999999998754
No 440
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.47 E-value=0.13 Score=51.35 Aligned_cols=41 Identities=7% Similarity=0.066 Sum_probs=29.8
Q ss_pred HhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC-cEEEEEECCh
Q 013831 340 ASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR-KIAVVVFPKP 380 (435)
Q Consensus 340 al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~ 380 (435)
.+...+.+++|- +++++..|..+++.+.... ..+++++.-+
T Consensus 170 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd 213 (390)
T 3gd7_A 170 VLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEAR 213 (390)
T ss_dssp HHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSS
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 356778899996 7889999998887777643 4566666543
No 441
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.47 E-value=0.13 Score=45.30 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4788999999999999999754
No 442
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.45 E-value=0.13 Score=51.07 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=34.3
Q ss_pred HhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 013831 340 ASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 340 al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R 390 (435)
.+.+.+.+++|- +++++..|..+++.+.+.. ..++|++.-+ +++ .+...|
T Consensus 154 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adr 209 (372)
T 1g29_1 154 IVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA-MTMGDR 209 (372)
T ss_dssp HHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH-HHHCSE
T ss_pred HhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH-HHhCCE
Confidence 356788999996 7899999998887776542 4667666444 444 344444
No 443
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.44 E-value=0.13 Score=45.76 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4788999999999999999864
No 444
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.41 E-value=0.13 Score=45.79 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.1
Q ss_pred eEEEEEccCCCChhHHHHHHHhh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~ 289 (435)
.-|+++|.+|+||||+..++...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34788999999999999999864
No 445
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.37 E-value=0.13 Score=45.92 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.6
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3788999999999999999864
No 446
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.36 E-value=0.13 Score=45.69 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=19.8
Q ss_pred eEEEEEccCCCChhHHHHHHHhh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~ 289 (435)
-=|+++|.+|+||||+..++...
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 34789999999999999999854
No 447
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.33 E-value=0.12 Score=49.53 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++....
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHhccccc
Confidence 46889999999999999999986543
No 448
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.32 E-value=0.11 Score=45.33 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=20.4
Q ss_pred eEEEEEccCCCChhHHHHHHHhhC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~ 290 (435)
--|+++|.+|+||||+..++....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 347899999999999999997553
No 449
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.25 E-value=0.13 Score=45.14 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=18.4
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.+|+||||+..++...
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 788999999999999999754
No 450
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.16 E-value=0.1 Score=51.46 Aligned_cols=49 Identities=10% Similarity=0.277 Sum_probs=33.8
Q ss_pred hcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 013831 341 SRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 341 l~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R 390 (435)
+...+.+++|- +++++..|..+++.+++.. ..+++++.-+ +++. +...|
T Consensus 143 ~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~-~~adr 197 (348)
T 3d31_A 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEAR-IMADR 197 (348)
T ss_dssp TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHCSE
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCE
Confidence 56778999996 8899999998888776542 4667666444 4443 44444
No 451
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.14 E-value=0.18 Score=52.66 Aligned_cols=52 Identities=13% Similarity=0.025 Sum_probs=35.2
Q ss_pred HHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC-cEEEEEECChHHHHHHHHHh
Q 013831 339 RASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR-KIAVVVFPKPEDLKIRSVKR 390 (435)
Q Consensus 339 ~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~-~~~vv~l~~~ee~~~R~~~R 390 (435)
+.+...+.+|+|- +++++..+.++++.+.... ..+++++.-+-+...+...|
T Consensus 152 aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~ 206 (538)
T 3ozx_A 152 SLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDL 206 (538)
T ss_dssp HHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSE
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCE
Confidence 3356788999994 7899999988888777643 56777775542233444444
No 452
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=90.12 E-value=0.13 Score=50.97 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=18.7
Q ss_pred eEEEEEccCCCChhHHHHHHHh
Q 013831 267 EVMMMVGLPASGKTTWAEKWVK 288 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~ 288 (435)
.=|++.|.+||||||+++++.-
T Consensus 34 ~killlG~~~SGKST~~kq~~i 55 (362)
T 1zcb_A 34 VKILLLGAGESGKSTFLKQMRI 55 (362)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 3468899999999999999853
No 453
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.11 E-value=0.14 Score=45.17 Aligned_cols=22 Identities=45% Similarity=0.490 Sum_probs=19.4
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999753
No 454
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.10 E-value=0.15 Score=44.65 Aligned_cols=22 Identities=32% Similarity=0.367 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999999999999999865
No 455
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.04 E-value=0.19 Score=42.95 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=19.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVK 288 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~ 288 (435)
+.+.+++|+.||||||+...+.-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999999888753
No 456
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.01 E-value=0.15 Score=45.14 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=19.6
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3788999999999999999864
No 457
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=89.98 E-value=0.14 Score=47.49 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=20.6
Q ss_pred eEEEEEccCCCChhHHHHHHHhhC
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~ 290 (435)
.=|+|+|.||+||||+...+....
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 347899999999999999998654
No 458
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=89.95 E-value=0.15 Score=45.33 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=19.6
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.||+||||+..++...
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999854
No 459
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=89.94 E-value=0.15 Score=45.76 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.0
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4788999999999999999753
No 460
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=89.90 E-value=0.15 Score=44.92 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.4
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+|+|.||+||||+..++...
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999853
No 461
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.88 E-value=0.13 Score=52.54 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
..+++.++|++||||||+++.++...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 35788999999999999999997654
No 462
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=89.85 E-value=0.14 Score=46.46 Aligned_cols=24 Identities=17% Similarity=0.421 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~ 289 (435)
..-|+++|.+|+||||+..++...
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345789999999999999999764
No 463
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=89.84 E-value=0.15 Score=50.37 Aligned_cols=25 Identities=36% Similarity=0.254 Sum_probs=21.8
Q ss_pred ceEEEE--EccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMM--VGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim--~GlPGSGKST~A~~l~~~~ 290 (435)
+.++++ +|+||+||||+++.+++..
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 567888 9999999999999998764
No 464
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.51 E-value=0.097 Score=51.67 Aligned_cols=50 Identities=16% Similarity=0.295 Sum_probs=33.3
Q ss_pred HhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC---cEEEEEECCh-HHHHHHHHHh
Q 013831 340 ASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR---KIAVVVFPKP-EDLKIRSVKR 390 (435)
Q Consensus 340 al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~---~~~vv~l~~~-ee~~~R~~~R 390 (435)
.+...+.+++|- +++++..|..+++.+.+.. ..+++++.-+ +++. +...|
T Consensus 155 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~-~~adr 210 (353)
T 1oxx_K 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIF-AIADR 210 (353)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHH-HHCSE
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCE
Confidence 356778999996 7888888888777776542 4567666443 4443 44444
No 465
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=89.49 E-value=0.18 Score=48.33 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=25.3
Q ss_pred eEEEEEccCCCChhHHHHHHHhhCCCccEEEec
Q 013831 267 EVMMMVGLPASGKTTWAEKWVKDHPEKRYILLG 299 (435)
Q Consensus 267 ~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls 299 (435)
.++++.|++|+||||+++.+++..... ++.++
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~-~~~~~ 62 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLP-YIYLD 62 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCC-EEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCC-EEEEE
Confidence 489999999999999999998875432 44443
No 466
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=89.48 E-value=0.16 Score=50.26 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=27.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D 301 (435)
..++++.|.||+||||+|..++... .+..++.++++
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 5688999999999999999887542 12236667664
No 467
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=89.45 E-value=0.17 Score=47.41 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=19.8
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
-|+++|.||+||||+..++...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999865
No 468
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=89.37 E-value=0.18 Score=45.33 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.2
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.+|+||||+..++...
T Consensus 30 i~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 30 LVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 788999999999999999864
No 469
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=89.31 E-value=0.19 Score=48.18 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=21.9
Q ss_pred cceEEEEEccCCCChhHHHHHHHhh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~ 289 (435)
.+..|.++|.||+||||+..++...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3567999999999999999999864
No 470
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.30 E-value=0.2 Score=51.01 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=28.0
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhC--CCccEEEeccH
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDH--PEKRYILLGTN 301 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~--~~~~~~~ls~D 301 (435)
...++++.|.||+||||||..++... .+..+..+|.+
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 35899999999999999998887542 13346677664
No 471
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=89.22 E-value=0.19 Score=44.28 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=18.6
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.+|+||||+.+.+...
T Consensus 23 i~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 23 ILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 788999999999999987764
No 472
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=89.20 E-value=0.18 Score=48.76 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=24.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D 301 (435)
..-++++|.+|+||||+|-.+.+.- +..++-|
T Consensus 147 g~gvli~G~sG~GKStlal~l~~~G----~~lv~DD 178 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLINKN----HLFVGDD 178 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTTT----CEEEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcC----CEEEeCC
Confidence 3578999999999999999987642 3455544
No 473
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=89.16 E-value=0.18 Score=46.76 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCChhHHHHHHHhh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~ 289 (435)
..-|+++|.||+||||+..++...
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 345788999999999999999854
No 474
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=89.07 E-value=0.37 Score=48.95 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.8
Q ss_pred CcceEEEEEccCCCChhHHHHHHHhh
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~~ 289 (435)
...++.++.|.|||||||+..+++..
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhcc
Confidence 35789999999999999999988764
No 475
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=89.05 E-value=0.15 Score=44.44 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=18.7
Q ss_pred EEEEEccCCCChhHHHHHHHh
Q 013831 268 VMMMVGLPASGKTTWAEKWVK 288 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~ 288 (435)
=|+++|.+|+||||+..++..
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999964
No 476
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=89.03 E-value=0.2 Score=48.73 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
+..+++.|+||+||||+|+.+++.+.
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHh
Confidence 46789999999999999999988653
No 477
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=88.99 E-value=0.18 Score=48.45 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.0
Q ss_pred EEEEccCCCChhHHHHHHHhh
Q 013831 269 MMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~~ 289 (435)
|+++|.+|+||||+.+.++..
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 488999999999999998653
No 478
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=88.93 E-value=0.2 Score=52.26 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.4
Q ss_pred cceEEEEEccCCCChhHHHHHHHh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVK 288 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~ 288 (435)
...+|.++|++|.||||+|+.++.
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Confidence 468999999999999999998863
No 479
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=88.91 E-value=0.2 Score=45.17 Aligned_cols=22 Identities=18% Similarity=0.495 Sum_probs=19.6
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
No 480
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=88.90 E-value=0.27 Score=49.16 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.0
Q ss_pred CcceEEEEEccCCCChhHHHHHHHh
Q 013831 264 KDCEVMMMVGLPASGKTTWAEKWVK 288 (435)
Q Consensus 264 ~~~~liim~GlPGSGKST~A~~l~~ 288 (435)
.....+.++|+||+||||+.+.+..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3456789999999999999999987
No 481
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.83 E-value=0.19 Score=52.09 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=22.1
Q ss_pred cceEEEEEccCCCChhHHHHHHHhh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~ 289 (435)
..+++++.|+|||||||+++.++..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4679999999999999999998754
No 482
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=88.74 E-value=0.16 Score=58.77 Aligned_cols=110 Identities=11% Similarity=0.127 Sum_probs=60.8
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC-CccEEEec--------cHHHHHHhcc-C-------CCccCC-CCh---H--HH
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP-EKRYILLG--------TNLILEQMKV-P-------GLLRKH-NYS---E--RF 322 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~-~~~~~~ls--------~D~ir~~~~~-~-------G~~~~~-~~~---~--~~ 322 (435)
.+.|-+||.+||||||+++.+.+-+. ..+-+.|+ .+.+|+++.+ + |..+++ .|. + .-
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd 1184 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTM 1184 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCH
T ss_pred CCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCH
Confidence 46788999999999999999988653 22334442 3456665542 1 211211 010 0 01
Q ss_pred HHHHHHHHH-HHHHHHHHHhcCCCeEEEeC--CCcCHHHHHHHHHHHhc-CCcEEEEEE
Q 013831 323 QCLMGRANA-IFDVLLSRASRTPRNFIIDQ--TNVFKSARKRKLRLFVN-FRKIAVVVF 377 (435)
Q Consensus 323 ~~~~~~~~~-~~~~ll~~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~-~~~~~vv~l 377 (435)
+++.+.++. .+.+.+ ..+..|.+..|.. .|++..+|++ +..++. +++-.++.+
T Consensus 1185 ~ei~~Al~~a~l~~~I-~~Lp~GldT~vge~G~~LSgGQrQr-iaiARAllr~~~ILiL 1241 (1321)
T 4f4c_A 1185 AQVEEAARLANIHNFI-AELPEGFETRVGDRGTQLSGGQKQR-IAIARALVRNPKILLL 1241 (1321)
T ss_dssp HHHHHHHHHTTCHHHH-HTSTTTTCSEETTTSCSSCHHHHHH-HHHHHHHHSCCSEEEE
T ss_pred HHHHHHHHHhCChHHH-HcCcCCCCCEecCCCcccCHHHHHH-HHHHHHHHhCCCEEEE
Confidence 223332221 122333 2345777777753 7899998886 666665 333445555
No 483
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=88.70 E-value=0.21 Score=52.52 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=23.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+++.++...+
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccC
Confidence 57899999999999999999987654
No 484
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=88.66 E-value=0.12 Score=54.66 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=21.7
Q ss_pred EEEEEccCCCChhHHHHHHHhhCC
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~ 291 (435)
=++|+|+||+|||++|+.+++..+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~ 352 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAP 352 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCS
T ss_pred ceEEECCCchHHHHHHHHHHHhCC
Confidence 378999999999999999998876
No 485
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.51 E-value=0.24 Score=49.86 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~ 289 (435)
..++.++|.+||||||+.+.+...
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 348999999999999999999874
No 486
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.49 E-value=0.23 Score=51.74 Aligned_cols=52 Identities=12% Similarity=0.032 Sum_probs=35.4
Q ss_pred HHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcCC--cEEEEEECChHHHHHHHHHh
Q 013831 339 RASRTPRNFIIDQ--TNVFKSARKRKLRLFVNFR--KIAVVVFPKPEDLKIRSVKR 390 (435)
Q Consensus 339 ~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~~--~~~vv~l~~~ee~~~R~~~R 390 (435)
..+.....+|+|- +++++..+.+.++.+..+. ..++|++.-+-....+...|
T Consensus 172 aL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dr 227 (538)
T 1yqt_A 172 ALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDI 227 (538)
T ss_dssp HHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 3357788999994 7899999988877776542 56777776542334444444
No 487
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.45 E-value=0.22 Score=52.33 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+++.++..++
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 57899999999999999999987653
No 488
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.30 E-value=0.23 Score=52.41 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=23.8
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
..+++.++|++||||||+++.++..++
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 368899999999999999999987664
No 489
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=88.27 E-value=0.11 Score=45.72 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=3.9
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
=|+++|.+|+||||+..++...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4788999999999999998765
No 490
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.26 E-value=0.26 Score=53.42 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=26.7
Q ss_pred EEEEEccCCCChhHHHHHHHhhCCCccEEEeccH
Q 013831 268 VMMMVGLPASGKTTWAEKWVKDHPEKRYILLGTN 301 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~~~~~~~~~ls~D 301 (435)
-++++|+||+|||++|+.++..++ ..++.++..
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~-~~~~~i~~s 522 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALG-IELLRFDMS 522 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-CEEEEEEGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc-CCEEEEech
Confidence 589999999999999999998875 346666543
No 491
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=88.25 E-value=0.093 Score=50.77 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDH 290 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~ 290 (435)
.+++.++|+||+||||+.+.+....
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 4689999999999999999997543
No 492
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=88.24 E-value=0.24 Score=44.90 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=19.0
Q ss_pred EEEEEccCCCChhHHHHHHHh
Q 013831 268 VMMMVGLPASGKTTWAEKWVK 288 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~ 288 (435)
=|+|+|.||+||||+..++..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 388999999999999999974
No 493
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=88.21 E-value=0.23 Score=52.35 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=23.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhhCC
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKDHP 291 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~~~ 291 (435)
.+++.++|++||||||+.+.++...+
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 57899999999999999999988754
No 494
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=88.21 E-value=1.4 Score=47.54 Aligned_cols=25 Identities=12% Similarity=0.337 Sum_probs=20.8
Q ss_pred cceEEEEEccCCCChhHHHHHHHhhCCC
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVKDHPE 292 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~~~~~ 292 (435)
..++|+++|+ ||+|+.++|.+.++.
T Consensus 530 ~~r~vvl~GP---~K~tl~~~L~~~~~~ 554 (721)
T 2xkx_A 530 YARPIIILGP---TKDRANDDLLSEFPD 554 (721)
T ss_pred CCCEEEEECC---CHHHHHHHHHHhCcc
Confidence 3578999998 499999999988763
No 495
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=88.19 E-value=0.22 Score=46.87 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=18.0
Q ss_pred EEEEccCCCChhHHHHHHHh
Q 013831 269 MMMVGLPASGKTTWAEKWVK 288 (435)
Q Consensus 269 iim~GlPGSGKST~A~~l~~ 288 (435)
|+++|.||+||||+...+..
T Consensus 11 I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999998754
No 496
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=88.19 E-value=0.28 Score=47.07 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCChhHHHHHHHhh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~ 289 (435)
+-.|+++|.||+||||+..++...
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999864
No 497
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=87.96 E-value=0.27 Score=47.64 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCChhHHHHHHHhh
Q 013831 266 CEVMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 266 ~~liim~GlPGSGKST~A~~l~~~ 289 (435)
..-++++|.+|+||||+|..+.+.
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 367899999999999999999886
No 498
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=87.90 E-value=1 Score=45.38 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=19.9
Q ss_pred EEEEEccCCCChhHHHHHHHhh
Q 013831 268 VMMMVGLPASGKTTWAEKWVKD 289 (435)
Q Consensus 268 liim~GlPGSGKST~A~~l~~~ 289 (435)
.|+++|.|++||||+..++...
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999764
No 499
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=87.86 E-value=0.31 Score=50.75 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=22.1
Q ss_pred cceEEEEEccCCCChhHHHHHHHh
Q 013831 265 DCEVMMMVGLPASGKTTWAEKWVK 288 (435)
Q Consensus 265 ~~~liim~GlPGSGKST~A~~l~~ 288 (435)
...+|.++|++|.||||+|+.++.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999999985
No 500
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.86 E-value=0.25 Score=51.58 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=35.7
Q ss_pred HHhcCCCeEEEeC--CCcCHHHHHHHHHHHhcC---CcEEEEEECChHHHHHHHHHh
Q 013831 339 RASRTPRNFIIDQ--TNVFKSARKRKLRLFVNF---RKIAVVVFPKPEDLKIRSVKR 390 (435)
Q Consensus 339 ~al~~g~~vIlD~--Tn~~~~~R~~~~~~~~~~---~~~~vv~l~~~ee~~~R~~~R 390 (435)
+.+.....+|+|- ++++...|..+++.+.+. ...+++++.-+-+...+...|
T Consensus 399 aL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDr 455 (538)
T 3ozx_A 399 TLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADR 455 (538)
T ss_dssp HHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 3357788999995 788999998888877654 246777776553334455555
Done!