BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013832
(435 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Amp
pdb|2V92|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Atp-Amp
pdb|2V9J|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Mg.Atp-Amp
pdb|2Y8L|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Two Adp
pdb|2Y8Q|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With One Adp
pdb|2Y94|E Chain E, Structure Of An Active Form Of Mammalian Ampk
pdb|2YA3|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Coumarin Adp
pdb|4EAG|C Chain C, Co-Crystal Structure Of An Chimeric Ampk Core With Atp
pdb|4EAI|C Chain C, Co-Crystal Structure Of An Ampk Core With Amp
pdb|4EAJ|C Chain C, Co-Crystal Of Ampk Core With Amp Soaked With Atp
pdb|4EAK|C Chain C, Co-Crystal Structure Of An Ampk Core With Atp
pdb|4EAL|C Chain C, Co-Crystal Of Ampk Core With Atp Soaked With Amp
Length = 330
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 124/263 (47%), Gaps = 36/263 (13%)
Query: 164 SVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSAS 223
+ F+ +H Y+L+P S K+V D L VK+AF L G+ APLWD K FVG+L+ +
Sbjct: 29 TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88
Query: 224 DFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDN 282
DFI IL + S L + ELE H I W+E YL DS +PLV PN +
Sbjct: 89 DFINILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCISPNAS 136
Query: 283 LKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL 342
L D ++ N++ +P+I S + L+I + ILK LKL
Sbjct: 137 LFDAVSSLIRNKIHRLPVIDPESGNT-----LYILTHKRILK--------------FLKL 177
Query: 343 PICAIPVGTWVPKIGEP----NRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSLL 398
I P ++ K E +AM+R ++P+VD+ ++
Sbjct: 178 FITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVV 237
Query: 399 DIYCRSDITALAKDKAYAHINLS 421
DIY + D+ LA +K Y ++++S
Sbjct: 238 DIYSKFDVINLAAEKTYNNLDVS 260
>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
Length = 96
Score = 81.6 bits (200), Expect = 8e-16, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 27 PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR 86
P F W GG+ V+LSGSFN WS+L P+ F I +P G HQYKF VDG+W
Sbjct: 12 PTVFRWTGGGKEVYLSGSFNNWSKL----PLTRSQNNFVAILDLPEGEHQYKFFVDGQWT 67
Query: 87 HDEHQPFISSEYGIVNTVLLATEPNF 112
HD +P ++S+ G VN ++ + +F
Sbjct: 68 HDPSEPIVTSQLGTVNNIIQVKKTDF 93
>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|E Chain E, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
Length = 333
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 116/259 (44%), Gaps = 21/259 (8%)
Query: 163 VSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSA 222
+ F+ + T+Y++LP S +++ D+ L VK + +L I APLWD +F G+L+
Sbjct: 14 IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 73
Query: 223 SDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDN 282
+DF+ +++ S I+ + + R+++ A P +Y P +
Sbjct: 74 ADFVNVIKYYYQSSSF-------PEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHS 126
Query: 283 LKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL 342
L D + + +P+I + GS ++ + + ILK + +C + +L++
Sbjct: 127 LMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFIS---MNCKET-AMLRV 181
Query: 343 PICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSLLDIYC 402
P+ + +GTW LA ++PIV+ +LL++Y
Sbjct: 182 PLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYE 232
Query: 403 RSDITALAKDKAYAHINLS 421
D+ L +D Y++++LS
Sbjct: 233 SVDVMHLIQDGDYSNLDLS 251
>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
Length = 96
Score = 80.9 bits (198), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Query: 27 PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR 86
P F W GG+ V+LSGSFN WS+L P F I +P G HQYKF VDG+W
Sbjct: 12 PTVFRWTGGGKEVYLSGSFNNWSKL----PXTRSQNNFVAILDLPEGEHQYKFFVDGQWT 67
Query: 87 HDEHQPFISSEYGIVNTVLLATEPNF 112
HD +P ++S+ G VN ++ + +F
Sbjct: 68 HDPSEPIVTSQLGTVNNIIQVKKTDF 93
>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 334
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 116/259 (44%), Gaps = 21/259 (8%)
Query: 163 VSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSA 222
+ F+ + T+Y++LP S +++ D+ L VK + +L I APLWD +F G+L+
Sbjct: 15 IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 74
Query: 223 SDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDN 282
+DF+ +++ S I+ + + R+++ A P +Y P +
Sbjct: 75 ADFVNVIKYYYQSSSF-------PEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHS 127
Query: 283 LKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL 342
L D + + +P+I + GS ++ + + ILK + +C + +L++
Sbjct: 128 LMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFIS---MNCKET-AMLRV 182
Query: 343 PICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSLLDIYC 402
P+ + +GTW LA ++PIV+ +LL++Y
Sbjct: 183 PLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYE 233
Query: 403 RSDITALAKDKAYAHINLS 421
D+ L +D Y++++LS
Sbjct: 234 SVDVMHLIQDGDYSNLDLS 252
>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|C Chain C, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|C Chain C, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 323
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 133/280 (47%), Gaps = 33/280 (11%)
Query: 146 EAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISM 205
++ E++S + Q++ + FL++ T+Y++LP S +++ LD L VK++ ++L + I
Sbjct: 7 DSQEKVS-IEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVS 65
Query: 206 APLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEEL-ETHTISAWKEGKAYLN-RQI 263
APLWD +RF G+L+ +DFI +++ + SN + EL + + K+ + L Q+
Sbjct: 66 APLWDSKTSRFAGLLTTTDFINVIQY---YFSNPDKFELVDKLQLDGLKDIERALGVDQL 122
Query: 264 DSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSG-- 321
D+ RPL A K+L + +P+I QD + + ++ L+
Sbjct: 123 DTASIHPSRPLFEA---------CLKMLESRSGRIPLI---DQDEETHREIVVSVLTQYR 170
Query: 322 ILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXXXXXX 381
ILK V R LK+PI + + I + N + M P
Sbjct: 171 ILKFVALNCRETH----FLKIPIGDLNI------ITQDNMKSCQMTTP---VIDVIQMLT 217
Query: 382 XXXXXSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 421
S+PI+D+N L+++Y D+ L K Y ++LS
Sbjct: 218 QGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS 257
>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|F Chain F, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 315
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 132/279 (47%), Gaps = 33/279 (11%)
Query: 147 AAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMA 206
+ E++S + Q++ + FL++ T+Y++LP S +++ LD L VK++ ++L + I A
Sbjct: 1 SQEKVS-IEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSA 59
Query: 207 PLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEEL-ETHTISAWKEGKAYLN-RQID 264
PLWD +RF G+L+ +DFI +++ + SN + EL + + K+ + L Q+D
Sbjct: 60 PLWDSKTSRFAGLLTTTDFINVIQY---YFSNPDKFELVDKLQLDGLKDIERALGVDQLD 116
Query: 265 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSG--I 322
+ RPL A K+L + +P+I QD + + ++ L+ I
Sbjct: 117 TASIHPSRPLFEA---------CLKMLESRSGRIPLI---DQDEETHREIVVSVLTQYRI 164
Query: 323 LKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXXXXXXX 382
LK V R LK+PI + + I + N + M P
Sbjct: 165 LKFVALNCRETH----FLKIPIGDLNI------ITQDNMKSCQMTTP---VIDVIQMLTQ 211
Query: 383 XXXXSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 421
S+PI+D+N L+++Y D+ L K Y ++LS
Sbjct: 212 GRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS 250
>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta2 Subunit
Length = 96
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 27 PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR 86
P W GG+ VF+SGSFN WS +P+ F I +P G HQYKF VDG+W
Sbjct: 11 PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHND---FVAILDLPEGEHQYKFFVDGQWV 67
Query: 87 HDEHQPFISSEYGIVNTVLLATEPNF 112
HD +P ++S+ G +N ++ + +F
Sbjct: 68 HDPSEPVVTSQLGTINNLIHVKKSDF 93
>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|E Chain E, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 252
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 23 TVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVD 82
++++P+ W GG V+++GSF +W +++ + P F + + PG H+++F VD
Sbjct: 1 SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60
Query: 83 GEWRHDEHQPFISSEYG 99
E R + P + + G
Sbjct: 61 NELRVSDFLPTATDQMG 77
>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase
pdb|3NME|B Chain B, Structure Of A Plant Phosphatase
Length = 294
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 35 GGRSVFLSGSFNRWSELLPMSPVEGCPTVFQII-WSIPPGYHQYKFCVDGEWRHDEHQPF 93
G V +SG W + +P++ +G T F I+ +P G +YK+ +DGEW H+E +PF
Sbjct: 180 GFSRVEISGLDIGWGQRIPLTLGKG--TGFWILKRELPEGQFEYKYIIDGEWTHNEAEPF 237
Query: 94 I--SSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQI 139
I + + N + +P + G + S + ++ E +L+Q
Sbjct: 238 IGPNKDGHTNNYAKVVDDPTSVDGTTRERLSSEDPELLEEERSKLIQF 285
>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From
Arabidopsis Thaliana
Length = 166
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 16/146 (10%)
Query: 191 VKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS 250
V +A +L E I+ P+ D + VG++S D +L L + GS TE + S
Sbjct: 26 VDEALELLVENRITGFPVID-EDWKLVGLVSDYD-LLALDSI--SGSGRTENSMFPEVDS 81
Query: 251 AWKEGKAYLNRQIDSHGKAF-----PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSS 305
WK A ++GK P PLV NL+D A+ +L + +P++ S
Sbjct: 82 TWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVE-EKTNLEDAAKILLETKYRRLPVVDS-- 138
Query: 306 QDGSFPQLLHIASLSGILKCVCRYFR 331
DG +L+ I + +++ + R
Sbjct: 139 -DG---KLVGIITRGNVVRAALQIKR 160
>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
pdb|3SL7|B Chain B, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
Length = 180
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 16/150 (10%)
Query: 191 VKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS 250
V A +L E+ ++ P+ D VGV+S D +L L + N + L S
Sbjct: 25 VDDALELLVEKKVTGLPVID-DNWTLVGVVSDYD-LLALDSISGRSQN--DTNLFPDVDS 80
Query: 251 AWKEGKAYLNRQIDSHGKAF-----PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSS 305
WK ++GK P PLV NL+D AR +L + +P++ +
Sbjct: 81 TWKTFNELQKLISKTYGKVVGDLXTPSPLVVRDST-NLEDAARLLLETKFRRLPVVDA-- 137
Query: 306 QDGSFPQLLHIASLSGILKCVCRYFRHCSS 335
DG +L+ I + +++ + R+ S
Sbjct: 138 -DG---KLIGILTRGNVVRAALQIKRNADS 163
>pdb|2UV7|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 387 SIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 421
++P+VD+ ++DIY + D+ LA +K Y ++++S
Sbjct: 54 ALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVS 88
>pdb|2UV6|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 387 SIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 421
++P+VD+ ++DIY + D+ LA +K Y ++++S
Sbjct: 54 ALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVS 88
>pdb|2UV4|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
pdb|2UV5|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 387 SIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 421
++P+VD+ ++DIY + D+ LA +K Y ++++S
Sbjct: 54 ALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVS 88
>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk.
pdb|3LFZ|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk
Length = 280
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 63/142 (44%), Gaps = 31/142 (21%)
Query: 191 VKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS 250
+K + G P+ S+ R VG+++++DFI +L GS+ ++T +
Sbjct: 167 LKDVARTMVRNGFRRLPV--VSEGRLVGIITSTDFIKLL------GSDWAFNHMQTGNV- 217
Query: 251 AWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSF 310
+ N +++ + R ++ A D LK +A ++ N++ +P++ + +
Sbjct: 218 -----REITNVRME---EIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLR---- 265
Query: 311 PQLLHIASLSGIL--KCVCRYF 330
+ GI+ K V +YF
Sbjct: 266 --------IKGIITEKDVLKYF 279
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPII 301
N ID + R ++ A P + LKDVAR ++ N +P++
Sbjct: 147 NEVIDDY---ITRDVIVATPGERLKDVARTMVRNGFRRLPVV 185
>pdb|3HFQ|A Chain A, Crystal Structure Of The Lp_2219 Protein From
Lactobacillus Plantarum. Northeast Structural Genomics
Consortium Target Lpr118.
pdb|3HFQ|B Chain B, Crystal Structure Of The Lp_2219 Protein From
Lactobacillus Plantarum. Northeast Structural Genomics
Consortium Target Lpr118
Length = 347
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 4/143 (2%)
Query: 27 PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR 86
P V+ G+ FL+G + L G T I+ +IP Y +
Sbjct: 189 PRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLS 248
Query: 87 HDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGS---NMDVD-NEAFQRLVQISDG 142
HD H ++S+ V T + I Q G + D+D EAF +V +
Sbjct: 249 HDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTD 308
Query: 143 SLTEAAERISEADLQVSRHRVSV 165
+ T A ++ L + + V+V
Sbjct: 309 NATLYARDLTSGKLSLLQKDVTV 331
>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 387 SIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 421
S+PI+D+N L+++Y D+ L K Y ++LS
Sbjct: 44 SVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS 78
>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
pdb|2NYE|B Chain B, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 387 SIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 421
S+PI+D+N L+++Y D+ L K Y ++LS
Sbjct: 44 SVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS 78
>pdb|2AMY|A Chain A, X-Ray Structure Of Human Phosphomannomutase 2 (Pmm2)
pdb|2Q4R|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Human Phosphomannomutase 2 (Pmm2)
Length = 246
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 217 VGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSH-GKAFPRPLV 275
+GV+ SDF + +LGN + + + A+K+GK + I SH G+A + L+
Sbjct: 41 IGVVGGSDFEKVQEQLGNDVVEKYDYVFPENGLVAYKDGKLLCRQNIQSHLGEALIQDLI 100
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 GSFNRWSELLPMSPVEGC-PTVFQIIWSIPPGYHQYKFCVDGEWR 86
G+ N WS + ++ P ++Q+ ++P G +QYK +D W
Sbjct: 177 GAANNWSPDDDHTLLKKINPNLYQLSGTLPAGTYQYKIALDHSWN 221
>pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|B Chain B, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|C Chain C, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|D Chain D, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant
Length = 415
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 21/87 (24%)
Query: 88 DEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQISDGSLTEA 147
D+ +PF++S GI G P+ + D +AF+ + +I +L +
Sbjct: 350 DQEKPFVTS------------------GIRLGTPAATTRGFDEKAFEEVAKIISLALKNS 391
Query: 148 AERISEADLQVSRHRVSVFLSTHTAYE 174
+ E LQ ++ RV+ + + Y+
Sbjct: 392 KD---EEKLQQAKERVAKLTAEYPLYQ 415
>pdb|3JTF|A Chain A, The Cbs Domain Pair Structure Of A Magnesium And Cobalt
Efflux Protein From Bordetella Parapertussis In Complex
With Amp
pdb|3JTF|B Chain B, The Cbs Domain Pair Structure Of A Magnesium And Cobalt
Efflux Protein From Bordetella Parapertussis In Complex
With Amp
Length = 129
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 185 LDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFI-------LILRELGNHGS 237
LDI P+ Q + E S P+++ + +G+L A D + L +R L
Sbjct: 20 LDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYXLEPALDIRSLVRPAV 79
Query: 238 NLTEEELETHTISAWKEGKAYLNRQIDSHG 267
+ E + + ++ + +L ID HG
Sbjct: 80 FIPEVKRLNVLLREFRASRNHLAIVIDEHG 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,078,880
Number of Sequences: 62578
Number of extensions: 538806
Number of successful extensions: 1243
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1207
Number of HSP's gapped (non-prelim): 30
length of query: 435
length of database: 14,973,337
effective HSP length: 102
effective length of query: 333
effective length of database: 8,590,381
effective search space: 2860596873
effective search space used: 2860596873
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)