Query 013832
Match_columns 435
No_of_seqs 403 out of 2894
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:50:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013832.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013832hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1764 5'-AMP-activated prote 99.9 7.1E-27 1.5E-31 235.5 19.6 250 159-433 55-306 (381)
2 cd02859 AMPKbeta_GBD_like AMP- 99.9 1.1E-24 2.3E-29 171.9 10.1 79 25-106 1-79 (79)
3 cd02861 E_set_proteins_like E 99.8 2.3E-18 5E-23 136.9 9.9 77 26-105 2-81 (82)
4 KOG1616 Protein involved in Sn 99.7 7.9E-17 1.7E-21 156.7 9.6 90 22-111 76-165 (289)
5 COG2524 Predicted transcriptio 99.7 2.3E-16 5E-21 146.2 12.0 115 269-411 177-291 (294)
6 COG3448 CBS-domain-containing 99.7 9.8E-16 2.1E-20 144.4 13.8 171 216-413 200-374 (382)
7 COG3448 CBS-domain-containing 99.6 1E-15 2.2E-20 144.3 12.2 144 157-330 232-375 (382)
8 COG2524 Predicted transcriptio 99.6 3.8E-15 8.2E-20 138.2 12.5 114 179-328 179-292 (294)
9 KOG1764 5'-AMP-activated prote 99.6 4.6E-14 9.9E-19 142.8 18.3 198 181-413 163-361 (381)
10 cd04618 CBS_pair_5 The CBS dom 99.6 3.8E-14 8.2E-19 116.3 11.8 95 273-408 2-97 (98)
11 cd04641 CBS_pair_28 The CBS do 99.5 9.8E-14 2.1E-18 117.3 13.8 118 273-408 2-119 (120)
12 cd04618 CBS_pair_5 The CBS dom 99.5 4.7E-14 1E-18 115.7 11.5 97 180-324 1-97 (98)
13 PRK14869 putative manganese-de 99.5 6.4E-13 1.4E-17 141.7 18.8 209 170-412 68-305 (546)
14 cd04627 CBS_pair_14 The CBS do 99.5 4.2E-13 9.1E-18 113.9 13.7 120 273-407 2-121 (123)
15 cd04603 CBS_pair_KefB_assoc Th 99.5 3.4E-13 7.3E-18 112.6 12.2 108 274-408 3-110 (111)
16 cd04619 CBS_pair_6 The CBS dom 99.5 7.5E-13 1.6E-17 110.9 13.3 111 274-408 3-113 (114)
17 cd04617 CBS_pair_4 The CBS dom 99.5 5.4E-13 1.2E-17 112.5 11.6 113 273-408 2-117 (118)
18 cd04600 CBS_pair_HPP_assoc Thi 99.5 7E-13 1.5E-17 112.2 12.1 122 272-408 2-123 (124)
19 COG3620 Predicted transcriptio 99.4 6.3E-13 1.4E-17 115.0 10.6 116 269-412 70-185 (187)
20 cd04630 CBS_pair_17 The CBS do 99.4 3E-12 6.5E-17 107.0 13.8 112 273-408 2-113 (114)
21 cd04614 CBS_pair_1 The CBS dom 99.4 1.7E-12 3.7E-17 105.9 11.4 94 273-408 2-95 (96)
22 cd04605 CBS_pair_MET2_assoc Th 99.4 3.6E-12 7.8E-17 105.5 13.0 108 272-408 2-109 (110)
23 cd04641 CBS_pair_28 The CBS do 99.4 5.7E-12 1.2E-16 106.4 13.6 119 181-325 2-120 (120)
24 cd04607 CBS_pair_NTP_transfera 99.4 5.7E-12 1.2E-16 105.1 13.3 109 274-408 4-112 (113)
25 cd04642 CBS_pair_29 The CBS do 99.4 4.7E-12 1E-16 108.0 13.0 121 273-408 2-125 (126)
26 cd04801 CBS_pair_M50_like This 99.4 3.1E-12 6.7E-17 106.8 11.6 111 273-408 2-113 (114)
27 cd04608 CBS_pair_PALP_assoc Th 99.4 1.3E-12 2.9E-17 111.6 9.2 113 272-409 2-123 (124)
28 cd04639 CBS_pair_26 The CBS do 99.4 5.3E-12 1.1E-16 104.7 12.3 109 273-408 2-110 (111)
29 cd04623 CBS_pair_10 The CBS do 99.4 9.7E-12 2.1E-16 103.0 13.9 111 273-408 2-112 (113)
30 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 7.3E-12 1.6E-16 103.0 12.8 104 273-408 2-105 (106)
31 cd04590 CBS_pair_CorC_HlyC_ass 99.4 7.8E-12 1.7E-16 103.7 12.8 109 273-408 2-110 (111)
32 cd04624 CBS_pair_11 The CBS do 99.4 1.2E-11 2.5E-16 102.8 13.6 110 273-408 2-111 (112)
33 cd04643 CBS_pair_30 The CBS do 99.4 5E-12 1.1E-16 105.5 11.3 114 273-408 2-115 (116)
34 cd04593 CBS_pair_EriC_assoc_ba 99.4 8.1E-12 1.8E-16 104.5 12.6 111 273-408 2-114 (115)
35 cd04642 CBS_pair_29 The CBS do 99.4 5.6E-12 1.2E-16 107.5 11.7 125 181-325 2-126 (126)
36 COG2905 Predicted signal-trans 99.4 4.2E-12 9E-17 129.7 11.7 118 269-412 154-271 (610)
37 cd04803 CBS_pair_15 The CBS do 99.4 1.2E-11 2.6E-16 104.4 12.5 118 273-408 2-121 (122)
38 PRK10892 D-arabinose 5-phospha 99.3 9E-12 2E-16 124.4 13.5 115 269-409 207-323 (326)
39 cd04620 CBS_pair_7 The CBS dom 99.3 1.8E-11 3.9E-16 102.3 13.3 110 273-408 2-114 (115)
40 COG0517 FOG: CBS domain [Gener 99.3 1.5E-11 3.3E-16 102.6 12.9 111 270-407 5-117 (117)
41 cd04588 CBS_pair_CAP-ED_DUF294 99.3 2.2E-11 4.8E-16 100.7 13.7 108 273-408 2-109 (110)
42 cd04585 CBS_pair_ACT_assoc2 Th 99.3 1.4E-11 3E-16 103.4 12.4 120 273-408 2-121 (122)
43 PRK07807 inosine 5-monophospha 99.3 3.3E-11 7.1E-16 125.4 17.6 180 204-432 43-225 (479)
44 PRK11543 gutQ D-arabinose 5-ph 99.3 1.2E-11 2.6E-16 123.1 13.7 115 269-409 202-318 (321)
45 cd04595 CBS_pair_DHH_polyA_Pol 99.3 2.5E-11 5.5E-16 100.5 13.4 108 272-408 2-109 (110)
46 cd04626 CBS_pair_13 The CBS do 99.3 1.9E-11 4.1E-16 101.5 12.6 109 273-408 2-110 (111)
47 cd04631 CBS_pair_18 The CBS do 99.3 1.3E-11 2.8E-16 104.6 11.8 119 273-408 2-124 (125)
48 cd04603 CBS_pair_KefB_assoc Th 99.3 1.4E-11 3E-16 102.8 11.7 109 181-324 2-110 (111)
49 cd04629 CBS_pair_16 The CBS do 99.3 1.6E-11 3.5E-16 102.1 11.9 112 273-408 2-113 (114)
50 cd04800 CBS_pair_CAP-ED_DUF294 99.3 1.8E-11 3.9E-16 101.5 12.1 109 273-408 2-110 (111)
51 cd04615 CBS_pair_2 The CBS dom 99.3 2.3E-11 5E-16 101.2 12.7 110 274-408 3-112 (113)
52 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 3.2E-11 7E-16 99.3 13.4 106 273-408 3-108 (109)
53 cd04586 CBS_pair_BON_assoc Thi 99.3 1.3E-11 2.8E-16 106.6 11.3 118 272-408 2-134 (135)
54 cd04617 CBS_pair_4 The CBS dom 99.3 3.2E-11 6.9E-16 101.6 13.3 114 181-324 2-117 (118)
55 cd04633 CBS_pair_20 The CBS do 99.3 2.2E-11 4.7E-16 102.6 12.1 119 273-408 2-120 (121)
56 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 2.5E-11 5.4E-16 100.9 12.3 111 273-408 3-113 (114)
57 cd04596 CBS_pair_DRTGG_assoc T 99.3 2.6E-11 5.7E-16 100.3 12.0 105 273-408 3-107 (108)
58 cd04619 CBS_pair_6 The CBS dom 99.3 5.3E-11 1.2E-15 99.6 14.0 112 181-324 2-113 (114)
59 cd04587 CBS_pair_CAP-ED_DUF294 99.3 3.9E-11 8.4E-16 99.7 12.8 111 273-408 2-112 (113)
60 cd04637 CBS_pair_24 The CBS do 99.3 2.2E-11 4.7E-16 102.9 11.3 117 273-408 2-121 (122)
61 cd04636 CBS_pair_23 The CBS do 99.3 2.8E-11 6E-16 104.1 12.2 125 273-408 2-131 (132)
62 PRK15094 magnesium/cobalt effl 99.3 6.1E-11 1.3E-15 116.4 16.1 164 167-380 64-227 (292)
63 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 4.5E-11 9.8E-16 98.8 13.0 109 273-408 2-110 (111)
64 TIGR03520 GldE gliding motilit 99.3 5.5E-11 1.2E-15 122.1 16.0 161 167-380 188-348 (408)
65 cd04621 CBS_pair_8 The CBS dom 99.3 4E-11 8.7E-16 104.1 12.8 128 273-408 2-134 (135)
66 cd04613 CBS_pair_SpoIVFB_EriC_ 99.3 3.9E-11 8.4E-16 99.6 12.1 111 273-408 2-113 (114)
67 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 5.6E-11 1.2E-15 98.2 13.0 109 273-408 2-110 (111)
68 cd04627 CBS_pair_14 The CBS do 99.3 5.5E-11 1.2E-15 100.8 13.2 119 181-322 2-120 (123)
69 cd04625 CBS_pair_12 The CBS do 99.3 5.9E-11 1.3E-15 98.5 13.1 110 273-408 2-111 (112)
70 cd04622 CBS_pair_9 The CBS dom 99.3 5.2E-11 1.1E-15 98.9 12.6 110 273-408 2-112 (113)
71 cd04640 CBS_pair_27 The CBS do 99.3 5.3E-11 1.1E-15 101.6 12.4 115 273-408 2-125 (126)
72 cd04802 CBS_pair_3 The CBS dom 99.3 1.1E-10 2.3E-15 96.9 13.9 110 273-408 2-111 (112)
73 cd04632 CBS_pair_19 The CBS do 99.3 8.1E-11 1.7E-15 100.4 13.5 118 273-408 2-127 (128)
74 cd04602 CBS_pair_IMPDH_2 This 99.3 6.7E-11 1.5E-15 98.9 12.7 109 273-408 3-113 (114)
75 cd04589 CBS_pair_CAP-ED_DUF294 99.3 7.4E-11 1.6E-15 97.8 12.8 109 273-408 2-110 (111)
76 TIGR01302 IMP_dehydrog inosine 99.3 8.7E-11 1.9E-15 122.1 15.9 168 201-411 30-201 (450)
77 cd04630 CBS_pair_17 The CBS do 99.3 1.9E-10 4.1E-15 96.1 14.9 112 181-324 2-113 (114)
78 PLN02274 inosine-5'-monophosph 99.3 5.4E-11 1.2E-15 124.7 14.0 167 205-412 54-223 (505)
79 cd04609 CBS_pair_PALP_assoc2 T 99.3 5.3E-11 1.1E-15 98.1 11.3 108 273-408 2-109 (110)
80 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 6.9E-11 1.5E-15 122.9 14.7 160 205-413 43-205 (475)
81 cd04635 CBS_pair_22 The CBS do 99.3 5.4E-11 1.2E-15 100.3 11.4 118 273-408 2-121 (122)
82 COG3620 Predicted transcriptio 99.3 1.1E-10 2.4E-15 101.1 13.1 122 169-328 64-185 (187)
83 PRK05567 inosine 5'-monophosph 99.3 1.7E-10 3.6E-15 121.2 17.2 161 205-411 41-205 (486)
84 PRK07107 inosine 5-monophospha 99.2 4.9E-11 1.1E-15 124.8 12.7 111 275-409 108-218 (502)
85 PRK10892 D-arabinose 5-phospha 99.2 7.6E-11 1.6E-15 117.7 13.6 124 168-325 200-323 (326)
86 cd04614 CBS_pair_1 The CBS dom 99.2 1.2E-10 2.6E-15 94.9 12.1 94 181-324 2-95 (96)
87 PTZ00314 inosine-5'-monophosph 99.2 1.2E-10 2.7E-15 121.9 14.8 164 204-410 49-217 (495)
88 cd04623 CBS_pair_10 The CBS do 99.2 3E-10 6.4E-15 94.1 14.1 111 181-324 2-112 (113)
89 PRK15094 magnesium/cobalt effl 99.2 1.2E-10 2.5E-15 114.4 13.1 123 269-418 72-196 (292)
90 cd04600 CBS_pair_HPP_assoc Thi 99.2 2.1E-10 4.5E-15 97.0 12.7 122 180-324 2-123 (124)
91 cd04601 CBS_pair_IMPDH This cd 99.2 1.2E-10 2.7E-15 96.0 10.9 107 272-408 2-109 (110)
92 cd02205 CBS_pair The CBS domai 99.2 3.1E-10 6.8E-15 92.8 13.2 111 273-408 2-112 (113)
93 cd04594 CBS_pair_EriC_assoc_ar 99.2 1.9E-10 4E-15 94.6 11.8 100 275-408 4-103 (104)
94 cd04599 CBS_pair_GGDEF_assoc2 99.2 2.2E-10 4.8E-15 93.8 12.1 102 273-407 2-103 (105)
95 cd04803 CBS_pair_15 The CBS do 99.2 2.7E-10 5.8E-15 96.0 12.8 120 181-324 2-121 (122)
96 cd04607 CBS_pair_NTP_transfera 99.2 3.1E-10 6.7E-15 94.5 13.0 110 181-324 3-112 (113)
97 cd04610 CBS_pair_ParBc_assoc T 99.2 2.5E-10 5.4E-15 93.8 12.2 105 272-408 2-106 (107)
98 cd04632 CBS_pair_19 The CBS do 99.2 4.4E-10 9.6E-15 95.8 13.8 125 181-324 2-127 (128)
99 TIGR00400 mgtE Mg2+ transporte 99.2 3.3E-10 7.1E-15 117.9 15.4 121 262-413 129-254 (449)
100 cd04605 CBS_pair_MET2_assoc Th 99.2 3.2E-10 6.9E-15 93.7 12.5 108 180-324 2-109 (110)
101 PRK07807 inosine 5-monophospha 99.2 1.2E-09 2.6E-14 113.8 19.2 183 163-413 82-265 (479)
102 PRK11543 gutQ D-arabinose 5-ph 99.2 2.2E-10 4.7E-15 114.1 13.1 123 169-325 196-318 (321)
103 PRK01862 putative voltage-gate 99.2 2E-10 4.4E-15 123.2 13.4 118 269-411 452-571 (574)
104 cd04608 CBS_pair_PALP_assoc Th 99.2 1.8E-10 3.9E-15 98.4 10.5 113 181-326 3-124 (124)
105 cd04590 CBS_pair_CorC_HlyC_ass 99.2 6.6E-10 1.4E-14 92.0 13.6 109 181-324 2-110 (111)
106 cd04589 CBS_pair_CAP-ED_DUF294 99.2 8.5E-10 1.8E-14 91.4 14.1 110 181-325 2-111 (111)
107 cd04631 CBS_pair_18 The CBS do 99.2 5.7E-10 1.2E-14 94.4 13.3 121 181-324 2-124 (125)
108 cd04606 CBS_pair_Mg_transporte 99.2 2.8E-10 6E-15 94.3 11.0 102 277-409 2-108 (109)
109 cd04643 CBS_pair_30 The CBS do 99.2 5.3E-10 1.2E-14 93.2 12.8 114 181-324 2-115 (116)
110 cd04593 CBS_pair_EriC_assoc_ba 99.2 8.2E-10 1.8E-14 92.2 13.9 112 182-324 3-114 (115)
111 TIGR00400 mgtE Mg2+ transporte 99.2 1E-10 2.3E-15 121.6 10.3 181 160-411 119-306 (449)
112 cd04584 CBS_pair_ACT_assoc Thi 99.2 3.4E-10 7.5E-15 95.1 11.6 117 273-408 2-120 (121)
113 cd04639 CBS_pair_26 The CBS do 99.2 6.3E-10 1.4E-14 92.1 12.9 109 181-324 2-110 (111)
114 cd04801 CBS_pair_M50_like This 99.2 3.8E-10 8.1E-15 94.1 11.6 111 181-324 2-113 (114)
115 cd04634 CBS_pair_21 The CBS do 99.2 5.4E-10 1.2E-14 97.7 13.0 126 273-408 2-142 (143)
116 cd04633 CBS_pair_20 The CBS do 99.2 8E-10 1.7E-14 92.9 13.5 118 181-324 2-120 (121)
117 COG2905 Predicted signal-trans 99.2 2.8E-10 6.1E-15 116.4 12.6 123 171-329 150-272 (610)
118 cd04591 CBS_pair_EriC_assoc_eu 99.2 5.4E-10 1.2E-14 92.5 12.2 102 273-408 3-104 (105)
119 cd04637 CBS_pair_24 The CBS do 99.2 1.4E-09 2.9E-14 91.8 14.8 121 181-325 2-122 (122)
120 TIGR03520 GldE gliding motilit 99.1 4.2E-10 9E-15 115.6 13.7 120 269-417 196-317 (408)
121 cd04582 CBS_pair_ABC_OpuCA_ass 99.1 4.6E-10 9.9E-15 92.1 11.3 104 181-324 2-105 (106)
122 cd04636 CBS_pair_23 The CBS do 99.1 7.4E-10 1.6E-14 95.1 12.9 131 181-325 2-132 (132)
123 cd04598 CBS_pair_GGDEF_assoc T 99.1 6.5E-10 1.4E-14 93.2 11.9 113 273-408 2-118 (119)
124 cd04800 CBS_pair_CAP-ED_DUF294 99.1 2E-09 4.4E-14 89.0 14.4 109 181-324 2-110 (111)
125 cd04585 CBS_pair_ACT_assoc2 Th 99.1 1.2E-09 2.6E-14 91.6 13.2 120 181-324 2-121 (122)
126 cd04615 CBS_pair_2 The CBS dom 99.1 1.4E-09 3.1E-14 90.3 13.4 110 182-324 3-112 (113)
127 cd04595 CBS_pair_DHH_polyA_Pol 99.1 2.1E-09 4.5E-14 88.9 14.3 108 180-324 2-109 (110)
128 cd02858 Esterase_N_term Estera 99.1 2.8E-10 6.1E-15 91.0 8.6 74 28-104 8-83 (85)
129 cd04626 CBS_pair_13 The CBS do 99.1 1.3E-09 2.8E-14 90.3 12.9 109 181-324 2-110 (111)
130 cd04629 CBS_pair_16 The CBS do 99.1 1.1E-09 2.3E-14 91.1 12.2 112 181-324 2-113 (114)
131 cd04621 CBS_pair_8 The CBS dom 99.1 1.3E-09 2.8E-14 94.6 13.2 124 181-324 2-134 (135)
132 TIGR00393 kpsF KpsF/GutQ famil 99.1 5.9E-10 1.3E-14 108.0 12.2 108 269-402 160-268 (268)
133 PRK05567 inosine 5'-monophosph 99.1 1.3E-09 2.9E-14 114.4 15.8 167 180-407 95-263 (486)
134 PRK01862 putative voltage-gate 99.1 7.9E-10 1.7E-14 118.7 14.3 132 164-328 441-572 (574)
135 TIGR01303 IMP_DH_rel_1 IMP deh 99.1 3.5E-09 7.7E-14 110.2 18.6 119 167-327 85-203 (475)
136 cd04586 CBS_pair_BON_assoc Thi 99.1 7.2E-10 1.6E-14 95.6 11.4 131 179-324 1-134 (135)
137 cd04613 CBS_pair_SpoIVFB_EriC_ 99.1 1.3E-09 2.8E-14 90.3 12.6 112 181-324 2-113 (114)
138 cd04588 CBS_pair_CAP-ED_DUF294 99.1 2.6E-09 5.5E-14 88.3 14.2 108 181-324 2-109 (110)
139 cd04640 CBS_pair_27 The CBS do 99.1 1.1E-09 2.5E-14 93.3 12.2 116 181-324 2-125 (126)
140 cd04612 CBS_pair_SpoIVFB_EriC_ 99.1 2.2E-09 4.8E-14 88.6 13.3 109 181-324 2-110 (111)
141 cd04620 CBS_pair_7 The CBS dom 99.1 2.1E-09 4.5E-14 89.6 12.9 110 181-324 2-114 (115)
142 cd04587 CBS_pair_CAP-ED_DUF294 99.1 3.5E-09 7.6E-14 87.8 14.1 111 181-324 2-112 (113)
143 cd04624 CBS_pair_11 The CBS do 99.1 3E-09 6.5E-14 88.1 13.5 110 181-324 2-111 (112)
144 cd04625 CBS_pair_12 The CBS do 99.1 4.2E-09 9.2E-14 87.2 14.3 109 182-324 3-111 (112)
145 cd04611 CBS_pair_PAS_GGDEF_DUF 99.1 3.5E-09 7.5E-14 87.4 13.7 109 181-324 2-110 (111)
146 cd04635 CBS_pair_22 The CBS do 99.1 1.8E-09 3.8E-14 91.0 12.1 119 181-324 2-121 (122)
147 cd04596 CBS_pair_DRTGG_assoc T 99.1 2.5E-09 5.4E-14 88.3 12.7 105 181-324 3-107 (108)
148 cd04591 CBS_pair_EriC_assoc_eu 99.1 2.5E-09 5.4E-14 88.5 12.6 100 181-324 3-104 (105)
149 cd04604 CBS_pair_KpsF_GutQ_ass 99.1 2.1E-09 4.6E-14 89.2 12.2 111 181-324 3-113 (114)
150 cd04802 CBS_pair_3 The CBS dom 99.1 6.9E-09 1.5E-13 86.0 14.9 110 181-324 2-111 (112)
151 cd04583 CBS_pair_ABC_OpuCA_ass 99.1 4E-09 8.8E-14 86.7 13.3 106 181-324 3-108 (109)
152 cd04584 CBS_pair_ACT_assoc Thi 99.1 4.7E-09 1E-13 88.1 13.8 119 181-324 2-120 (121)
153 cd04622 CBS_pair_9 The CBS dom 99.0 6.7E-09 1.5E-13 86.1 14.3 111 181-324 2-112 (113)
154 PRK11573 hypothetical protein; 99.0 6E-09 1.3E-13 107.2 16.3 132 167-331 184-315 (413)
155 cd04592 CBS_pair_EriC_assoc_eu 99.0 2.1E-09 4.6E-14 93.2 11.1 113 273-394 2-118 (133)
156 cd04609 CBS_pair_PALP_assoc2 T 99.0 4E-09 8.7E-14 86.7 12.0 109 181-325 2-110 (110)
157 COG0517 FOG: CBS domain [Gener 99.0 8.4E-09 1.8E-13 85.9 14.0 110 180-323 7-117 (117)
158 PLN02274 inosine-5'-monophosph 99.0 1.8E-08 3.9E-13 105.8 19.4 132 154-327 87-222 (505)
159 cd04592 CBS_pair_EriC_assoc_eu 99.0 5.2E-09 1.1E-13 90.8 12.9 116 181-303 2-117 (133)
160 cd04602 CBS_pair_IMPDH_2 This 99.0 7E-09 1.5E-13 86.6 12.8 107 181-324 3-113 (114)
161 cd04599 CBS_pair_GGDEF_assoc2 99.0 9E-09 2E-13 84.1 13.2 102 181-323 2-103 (105)
162 cd04594 CBS_pair_EriC_assoc_ar 99.0 9E-09 2E-13 84.5 13.0 101 182-324 3-103 (104)
163 TIGR01137 cysta_beta cystathio 99.0 5E-09 1.1E-13 109.4 13.9 114 269-410 340-453 (454)
164 cd02205 CBS_pair The CBS domai 99.0 1.3E-08 2.8E-13 83.1 13.5 111 181-324 2-112 (113)
165 PF00571 CBS: CBS domain CBS d 99.0 7.9E-10 1.7E-14 80.9 5.4 53 359-411 4-56 (57)
166 cd04634 CBS_pair_21 The CBS do 99.0 1.4E-08 3.1E-13 88.7 14.3 133 181-324 2-142 (143)
167 cd04610 CBS_pair_ParBc_assoc T 99.0 1.4E-08 3E-13 83.3 13.3 105 180-324 2-106 (107)
168 cd04606 CBS_pair_Mg_transporte 99.0 6.3E-09 1.4E-13 86.0 11.0 102 185-325 2-108 (109)
169 PRK07107 inosine 5-monophospha 99.0 1E-08 2.3E-13 107.4 15.1 107 183-325 108-218 (502)
170 cd04638 CBS_pair_25 The CBS do 99.0 1.6E-08 3.4E-13 83.1 12.9 104 273-408 2-105 (106)
171 COG2239 MgtE Mg/Co/Ni transpor 99.0 7E-09 1.5E-13 106.7 13.1 128 256-414 124-256 (451)
172 cd04601 CBS_pair_IMPDH This cd 98.9 1.2E-08 2.6E-13 83.9 11.4 106 181-324 3-109 (110)
173 cd04598 CBS_pair_GGDEF_assoc T 98.9 3E-08 6.4E-13 83.0 13.4 113 181-324 2-118 (119)
174 TIGR01302 IMP_dehydrog inosine 98.9 2.5E-08 5.5E-13 103.8 15.3 110 180-326 88-200 (450)
175 TIGR00393 kpsF KpsF/GutQ famil 98.8 2.2E-08 4.7E-13 97.1 11.8 114 170-318 155-268 (268)
176 PTZ00314 inosine-5'-monophosph 98.8 8.2E-08 1.8E-12 100.8 16.9 110 180-326 104-217 (495)
177 COG4109 Predicted transcriptio 98.8 2.5E-08 5.4E-13 96.9 11.5 110 272-412 198-307 (432)
178 TIGR01137 cysta_beta cystathio 98.8 5.1E-08 1.1E-12 101.8 15.0 127 162-326 327-453 (454)
179 cd04638 CBS_pair_25 The CBS do 98.8 1E-07 2.3E-12 78.2 13.2 104 181-324 2-105 (106)
180 COG1253 TlyC Hemolysins and re 98.8 1E-07 2.2E-12 98.8 14.0 130 167-331 203-332 (429)
181 COG4109 Predicted transcriptio 98.7 9.6E-08 2.1E-12 92.9 11.1 121 170-329 188-308 (432)
182 PRK11573 hypothetical protein; 98.7 2.1E-07 4.6E-12 95.8 13.6 123 270-417 195-317 (413)
183 cd02688 E_set E or "early" set 98.7 1.2E-07 2.6E-12 74.4 8.4 69 27-97 5-75 (83)
184 TIGR01186 proV glycine betaine 98.5 1.3E-06 2.9E-11 88.3 14.1 112 273-415 251-362 (363)
185 KOG2550 IMP dehydrogenase/GMP 98.5 8.1E-07 1.7E-11 88.0 11.7 167 199-408 56-225 (503)
186 COG1253 TlyC Hemolysins and re 98.5 1.7E-06 3.6E-11 89.7 14.6 122 270-418 214-335 (429)
187 PF00571 CBS: CBS domain CBS d 98.5 3.5E-07 7.6E-12 66.7 6.8 53 269-327 4-56 (57)
188 cd02854 Glycogen_branching_enz 98.4 1.1E-06 2.5E-11 72.1 8.1 64 28-93 7-84 (99)
189 PRK10070 glycine betaine trans 98.4 4E-06 8.7E-11 85.9 13.3 107 277-414 290-396 (400)
190 COG4536 CorB Putative Mg2+ and 98.4 3.3E-06 7.1E-11 83.2 11.4 131 168-331 198-328 (423)
191 COG4535 CorC Putative Mg2+ and 98.3 4E-06 8.7E-11 77.7 9.8 119 270-415 75-193 (293)
192 COG2239 MgtE Mg/Co/Ni transpor 98.2 2.1E-05 4.5E-10 81.2 13.9 131 158-329 118-255 (451)
193 PF02922 CBM_48: Carbohydrate- 98.2 1.2E-06 2.7E-11 69.5 3.6 57 28-85 13-74 (85)
194 COG4535 CorC Putative Mg2+ and 98.2 6.4E-06 1.4E-10 76.4 7.8 127 169-330 66-192 (293)
195 cd04597 CBS_pair_DRTGG_assoc2 98.1 5.6E-06 1.2E-10 69.4 5.8 52 357-408 61-112 (113)
196 smart00116 CBS Domain in cysta 98.0 1.5E-05 3.2E-10 54.5 6.2 47 364-410 2-48 (49)
197 KOG0474 Cl- channel CLC-7 and 97.9 4.2E-05 9E-10 79.8 8.4 143 267-410 585-746 (762)
198 TIGR01186 proV glycine betaine 97.8 0.00027 5.9E-09 71.7 13.4 108 183-329 253-360 (363)
199 PF00686 CBM_20: Starch bindin 97.8 7E-05 1.5E-09 61.1 6.8 56 26-81 2-68 (96)
200 PRK10070 glycine betaine trans 97.7 0.00035 7.5E-09 71.8 12.8 106 185-329 290-395 (400)
201 cd05808 CBM20_alpha_amylase Al 97.7 0.00017 3.6E-09 58.6 8.2 53 27-81 2-63 (95)
202 PRK14869 putative manganese-de 97.7 7.8E-05 1.7E-09 79.8 7.8 57 356-412 70-126 (546)
203 COG0296 GlgB 1,4-alpha-glucan 97.7 0.00017 3.7E-09 76.9 10.1 169 26-206 36-231 (628)
204 cd02860 Pullulanase_N_term Pul 97.6 0.00017 3.7E-09 59.2 7.1 63 28-94 10-84 (100)
205 COG4536 CorB Putative Mg2+ and 97.6 0.00023 4.9E-09 70.5 9.0 118 270-412 208-325 (423)
206 KOG2550 IMP dehydrogenase/GMP 97.6 0.00025 5.5E-09 70.7 9.0 126 155-325 99-226 (503)
207 cd05814 CBM20_Prei4 Prei4, N-t 97.6 0.00045 9.8E-09 58.8 9.2 48 35-82 14-67 (120)
208 KOG0474 Cl- channel CLC-7 and 97.6 0.00023 5E-09 74.4 8.1 152 166-326 578-746 (762)
209 cd05818 CBM20_water_dikinase P 97.5 0.00057 1.2E-08 55.3 8.8 63 26-91 2-76 (92)
210 cd04597 CBS_pair_DRTGG_assoc2 97.5 0.00018 4E-09 60.1 5.5 54 170-226 58-111 (113)
211 cd05820 CBM20_novamyl Novamyl 97.4 0.0016 3.5E-08 53.8 10.2 65 25-91 2-85 (103)
212 cd05809 CBM20_beta_amylase Bet 97.4 0.0013 2.8E-08 54.0 8.9 57 25-81 2-68 (99)
213 smart00116 CBS Domain in cysta 97.4 0.00064 1.4E-08 46.1 6.0 47 182-229 2-48 (49)
214 cd02855 Glycogen_branching_enz 97.4 0.0013 2.8E-08 54.2 8.9 61 31-92 27-93 (106)
215 KOG0475 Cl- channel CLC-3 and 97.1 0.0061 1.3E-07 64.2 12.6 134 273-411 557-695 (696)
216 cd05811 CBM20_glucoamylase Glu 97.1 0.0047 1E-07 51.2 9.8 58 24-81 5-73 (106)
217 cd05813 CBM20_genethonin_1 Gen 97.0 0.0025 5.4E-08 51.8 7.2 53 27-81 2-62 (95)
218 cd05807 CBM20_CGTase CGTase, C 97.0 0.0059 1.3E-07 50.2 8.9 66 25-90 2-84 (101)
219 cd02856 Glycogen_debranching_e 96.9 0.0036 7.8E-08 51.7 7.2 54 28-85 11-68 (103)
220 KOG0475 Cl- channel CLC-3 and 96.8 0.0057 1.2E-07 64.4 9.5 136 181-326 557-694 (696)
221 PRK12568 glycogen branching en 96.8 0.0024 5.2E-08 69.8 7.0 64 27-93 139-210 (730)
222 PRK12313 glycogen branching en 96.8 0.0029 6.3E-08 69.0 7.6 66 27-94 39-111 (633)
223 cd05817 CBM20_DSP Dual-specifi 96.8 0.0063 1.4E-07 50.0 7.7 45 35-81 12-62 (100)
224 cd05816 CBM20_DPE2_repeat2 Dis 96.7 0.017 3.6E-07 47.4 9.5 45 35-81 13-64 (99)
225 PRK14705 glycogen branching en 96.7 0.0032 6.9E-08 72.4 6.8 62 28-91 640-709 (1224)
226 PLN02447 1,4-alpha-glucan-bran 96.7 0.0041 9E-08 68.2 7.4 59 31-92 120-191 (758)
227 cd05467 CBM20 The family 20 ca 96.6 0.011 2.3E-07 47.8 7.8 47 34-81 11-65 (96)
228 cd02852 Isoamylase_N_term Isoa 96.6 0.0077 1.7E-07 51.0 7.0 60 28-89 9-76 (119)
229 cd05810 CBM20_alpha_MTH Glucan 96.5 0.019 4.2E-07 46.8 8.5 54 26-81 1-64 (97)
230 PRK14706 glycogen branching en 96.4 0.0059 1.3E-07 66.4 6.7 63 28-93 40-110 (639)
231 PRK05402 glycogen branching en 96.3 0.0082 1.8E-07 66.5 7.4 63 28-91 133-202 (726)
232 cd05815 CBM20_DPE2_repeat1 Dis 96.0 0.06 1.3E-06 44.1 9.1 54 28-81 4-65 (101)
233 cd05806 CBM20_laforin Laforin 95.7 0.15 3.2E-06 42.8 10.4 51 31-81 10-74 (112)
234 cd02853 MTHase_N_term Maltooli 95.7 0.035 7.5E-07 44.0 6.3 61 28-94 10-72 (85)
235 TIGR02402 trehalose_TreZ malto 95.6 0.024 5.3E-07 60.6 6.6 60 29-95 2-64 (542)
236 TIGR01515 branching_enzym alph 95.1 0.04 8.7E-07 59.9 6.6 64 28-93 30-101 (613)
237 PF03423 CBM_25: Carbohydrate 94.7 0.1 2.2E-06 41.7 6.3 63 27-89 3-78 (87)
238 PRK05402 glycogen branching en 94.6 0.067 1.5E-06 59.4 6.5 61 29-91 32-95 (726)
239 TIGR03415 ABC_choXWV_ATP choli 94.5 0.068 1.5E-06 54.6 6.0 48 363-412 334-381 (382)
240 PF11806 DUF3327: Domain of un 94.3 0.45 9.7E-06 40.6 9.6 84 26-110 2-115 (122)
241 COG4175 ProV ABC-type proline/ 94.3 0.079 1.7E-06 52.1 5.5 95 278-412 290-384 (386)
242 PLN02950 4-alpha-glucanotransf 94.0 0.33 7.2E-06 54.9 10.6 69 22-90 5-89 (909)
243 TIGR02104 pulA_typeI pullulana 93.4 0.17 3.6E-06 55.1 6.8 63 28-93 21-93 (605)
244 PLN02950 4-alpha-glucanotransf 92.6 0.85 1.8E-05 51.7 11.0 71 22-94 149-235 (909)
245 COG1125 OpuBA ABC-type proline 90.9 0.4 8.6E-06 46.0 5.1 116 272-409 187-308 (309)
246 PRK10439 enterobactin/ferric e 90.7 1.1 2.3E-05 46.4 8.6 87 23-110 36-164 (411)
247 PLN02316 synthase/transferase 90.0 0.86 1.9E-05 52.1 7.6 66 27-92 155-232 (1036)
248 PLN02960 alpha-amylase 88.7 0.39 8.4E-06 53.6 3.7 53 28-82 131-198 (897)
249 PLN02316 synthase/transferase 88.5 1.9 4.2E-05 49.4 9.1 68 26-93 329-414 (1036)
250 KOG0476 Cl- channel CLC-2 and 87.8 0.75 1.6E-05 50.0 4.9 62 356-417 590-653 (931)
251 TIGR02100 glgX_debranch glycog 87.4 1 2.2E-05 49.8 5.9 54 28-85 16-75 (688)
252 TIGR02102 pullulan_Gpos pullul 84.1 2.1 4.6E-05 49.5 6.5 63 28-92 329-406 (1111)
253 KOG0476 Cl- channel CLC-2 and 83.7 13 0.00029 40.8 11.7 57 173-231 591-648 (931)
254 PRK03705 glycogen debranching 83.7 1.7 3.7E-05 47.7 5.4 54 28-85 21-78 (658)
255 cd02857 CD_pullulan_degrading_ 79.9 7.2 0.00016 32.1 6.8 57 24-81 16-79 (116)
256 TIGR02103 pullul_strch alpha-1 79.2 4.1 8.8E-05 46.2 6.4 65 28-94 137-215 (898)
257 TIGR03415 ABC_choXWV_ATP choli 79.2 3.8 8.3E-05 41.9 5.8 47 181-230 334-380 (382)
258 COG1125 OpuBA ABC-type proline 73.3 5.1 0.00011 38.7 4.4 40 188-228 269-308 (309)
259 COG4175 ProV ABC-type proline/ 73.3 7.6 0.00016 38.6 5.7 89 192-328 296-384 (386)
260 PF01357 Pollen_allerg_1: Poll 73.2 15 0.00032 28.9 6.4 62 22-88 10-77 (82)
261 PF11896 DUF3416: Domain of un 71.3 6.4 0.00014 36.1 4.5 72 4-91 26-102 (187)
262 PLN03244 alpha-amylase; Provis 69.4 3.9 8.5E-05 45.3 3.1 53 28-82 134-201 (872)
263 PRK14510 putative bifunctional 67.5 17 0.00036 43.1 7.9 54 28-85 25-84 (1221)
264 PF02903 Alpha-amylase_N: Alph 66.8 15 0.00033 30.8 5.6 69 22-90 19-99 (120)
265 KOG0470 1,4-alpha-glucan branc 66.4 4.2 9.1E-05 44.4 2.5 38 31-69 119-157 (757)
266 COG3794 PetE Plastocyanin [Ene 62.4 25 0.00054 30.2 6.0 49 26-78 62-111 (128)
267 KOG1263 Multicopper oxidases [ 58.4 8.2 0.00018 41.5 3.0 61 48-112 85-150 (563)
268 PLN02877 alpha-amylase/limit d 51.6 32 0.00069 39.5 6.3 50 28-82 224-280 (970)
269 PF05198 IF3_N: Translation in 50.9 32 0.00069 26.7 4.4 32 385-416 12-43 (76)
270 KOG2118 Predicted membrane pro 47.9 39 0.00084 36.0 6.0 129 164-327 198-328 (498)
271 PF03370 CBM_21: Putative phos 44.4 58 0.0013 27.0 5.5 64 26-89 21-106 (113)
272 PF13473 Cupredoxin_1: Cupredo 43.9 30 0.00066 28.0 3.6 16 62-77 74-90 (104)
273 PF14347 DUF4399: Domain of un 41.4 52 0.0011 26.2 4.4 32 61-93 50-81 (87)
274 PRK10785 maltodextrin glucosid 38.4 1.1E+02 0.0025 33.2 8.0 63 22-84 17-87 (598)
275 TIGR03503 conserved hypothetic 38.1 71 0.0015 32.6 5.8 42 40-84 152-195 (374)
276 PRK11388 DNA-binding transcrip 34.4 1E+02 0.0022 33.7 6.9 100 285-402 63-162 (638)
277 PF07495 Y_Y_Y: Y_Y_Y domain; 33.9 31 0.00068 25.1 2.0 25 65-89 30-58 (66)
278 TIGR03009 plancto_dom_2 Planct 32.7 55 0.0012 30.6 3.8 15 80-94 67-84 (210)
279 TIGR02375 pseudoazurin pseudoa 32.2 1.5E+02 0.0033 24.8 6.1 16 26-41 23-38 (116)
280 PRK11388 DNA-binding transcrip 31.1 2.3E+02 0.0049 31.0 8.9 101 191-318 61-162 (638)
281 PF14827 Cache_3: Sensory doma 29.0 54 0.0012 27.1 2.9 18 386-403 92-109 (116)
282 PF04985 Phage_tube: Phage tai 27.7 2E+02 0.0042 25.5 6.5 48 38-92 99-148 (167)
283 PF11797 DUF3324: Protein of u 25.4 2.4E+02 0.0052 24.3 6.4 48 36-91 72-127 (140)
284 TIGR02589 cas_Csd2 CRISPR-asso 25.3 1.4E+02 0.0031 29.2 5.3 73 6-84 111-188 (284)
285 PRK00028 infC translation init 23.9 71 0.0015 29.0 2.8 31 385-415 19-49 (177)
286 PF13365 Trypsin_2: Trypsin-li 23.7 54 0.0012 26.4 1.9 20 381-400 101-120 (120)
287 KOG0045 Cytosolic Ca2+-depende 22.8 75 0.0016 34.7 3.2 27 71-97 115-144 (612)
288 PF02829 3H: 3H domain; Inter 22.7 3.6E+02 0.0078 21.9 6.5 91 279-385 6-96 (98)
289 TIGR03000 plancto_dom_1 Planct 22.5 1.2E+02 0.0025 23.6 3.3 45 28-84 5-55 (75)
290 TIGR01595 cas_CT1132 CRISPR-as 22.5 1.4E+02 0.0031 29.0 4.7 67 5-83 104-175 (265)
291 PF12282 H_kinase_N: Signal tr 22.4 49 0.0011 28.9 1.4 32 384-418 105-136 (145)
292 TIGR00168 infC translation ini 21.7 83 0.0018 28.2 2.8 27 387-413 9-35 (165)
293 COG0290 InfC Translation initi 21.1 1.4E+02 0.0031 26.9 4.0 33 384-416 17-49 (176)
294 PF02743 Cache_1: Cache domain 20.7 1E+02 0.0022 23.3 2.8 26 387-412 18-47 (81)
295 KOG2118 Predicted membrane pro 20.2 2.8E+02 0.006 29.6 6.8 121 272-418 214-335 (498)
296 PF05738 Cna_B: Cna protein B- 20.2 1.9E+02 0.0041 21.1 4.1 24 60-84 25-50 (70)
297 TIGR02657 amicyanin amicyanin. 20.1 2.3E+02 0.005 21.8 4.8 48 27-78 20-69 (83)
No 1
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.95 E-value=7.1e-27 Score=235.51 Aligned_cols=250 Identities=30% Similarity=0.537 Sum_probs=213.8
Q ss_pred HHHHHHHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCC
Q 013832 159 SRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSN 238 (435)
Q Consensus 159 ~~~~i~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~ 238 (435)
....+..|+..++||+++|.+++++.+|..+++.+||.+|..++++++||||..+.+++|+++..||+.++...+.....
T Consensus 55 ~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~ 134 (381)
T KOG1764|consen 55 AVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSS 134 (381)
T ss_pred hhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCc
Confidence 45688999999999999999999999999999999999999999999999999889999999999999999888774221
Q ss_pred C-ChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEee
Q 013832 239 L-TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIA 317 (435)
Q Consensus 239 l-~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGii 317 (435)
. ..+.++...+..+++..... +....++++.+.|..++.++...+.++++|++||+| .+.+ .+++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d--~~~~---~v~~il 202 (381)
T KOG1764|consen 135 LDNIEVLEDSQLSKRREVECLL-------KETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVID--PETG---EVLYIL 202 (381)
T ss_pred HHHHhhhhhhhccccchhhhhh-------ccccCCCceeecCcHHHHHHHHHHHhCCccceeeec--cccc---ceeeeh
Confidence 1 22334444444444431111 111334559999999999999999999999999997 3455 799999
Q ss_pred eHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcE
Q 013832 318 SLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSL 397 (435)
Q Consensus 318 T~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~l 397 (435)
|++.|++++..+.+..+ ..+++..++.++.+|+|. ++..+..++++.+|+++|.+++++++||||++|++
T Consensus 203 t~~rIl~~l~~~~~~~~-~~~~l~~s~~dl~ig~~~---------~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~ 272 (381)
T KOG1764|consen 203 TQRRILKFLWLNGRLLP-LPSLLSKSLSDLGIGTWS---------NIASISEDTPVIEALKIMSERRISALPVVDENGKK 272 (381)
T ss_pred hHHHHHHHHHHhhcccc-cHHHhhCCHHHhCcchhh---------hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCce
Confidence 99999999998877665 457889999999999996 79999999999999999999999999999999999
Q ss_pred EEEEeHHHHHHHHhhcccccCCCCCcc-HHHHHhhhc
Q 013832 398 LDIYCRSDITALAKDKAYAHINLSEMT-IHQVTIVSS 433 (435)
Q Consensus 398 vGiis~~DI~~~~~~~~~~~l~~~~~~-v~~~l~~~~ 433 (435)
+|+|++.|++.++....|..++ .+ +.+++..|.
T Consensus 273 v~~~s~~Dv~~l~~~~~~~~~~---~~~l~~~~~~~~ 306 (381)
T KOG1764|consen 273 VGNYSRFDVIHLAREGTYNNLD---LSCLSEALSHRP 306 (381)
T ss_pred ecceehhhhhhhhhcCccCccc---hhHHHHHhhhcc
Confidence 9999999999999999999886 67 999998774
No 2
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.92 E-value=1.1e-24 Score=171.93 Aligned_cols=79 Identities=42% Similarity=0.907 Sum_probs=73.5
Q ss_pred eeeEEEEecCCCcEEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEECCeeecCCCCCeeeCCCCCeeeE
Q 013832 25 LIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTV 104 (435)
Q Consensus 25 ~~~~~f~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykF~VDg~w~~d~~~~~~~d~~G~~nnv 104 (435)
++|++|+|+++|++|+|+|+|++|++.+||.+.. .+ |+++++||||.|+|||+|||+|.+||++|++.|++|+.||+
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~--~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~ 77 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSG--KG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNV 77 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceECC--CC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeee
Confidence 4799999999999999999999999878999852 34 99999999999999999999999999999999999999999
Q ss_pred EE
Q 013832 105 LL 106 (435)
Q Consensus 105 l~ 106 (435)
|.
T Consensus 78 i~ 79 (79)
T cd02859 78 ID 79 (79)
T ss_pred EC
Confidence 84
No 3
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.77 E-value=2.3e-18 Score=136.94 Aligned_cols=77 Identities=34% Similarity=0.726 Sum_probs=69.5
Q ss_pred eeEEEEecCC-CcEEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEECCeee-cCCCCC-eeeCCCCCee
Q 013832 26 IPMRFVWPYG-GRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR-HDEHQP-FISSEYGIVN 102 (435)
Q Consensus 26 ~~~~f~w~~~-~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykF~VDg~w~-~d~~~~-~~~d~~G~~n 102 (435)
++++|+|..+ +++|+|+|+|++|+. .+|++. .+|.|+++++|+||.|+|||+|||.|. +||.++ +..|+.|+.|
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~~-~~m~~~--~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n 78 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWNA-IPMERE--GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKN 78 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCCc-ccCEEC--CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccc
Confidence 5899999877 599999999999984 699884 469999999999999999999999998 999998 5888899999
Q ss_pred eEE
Q 013832 103 TVL 105 (435)
Q Consensus 103 nvl 105 (435)
|+|
T Consensus 79 ~v~ 81 (82)
T cd02861 79 AVF 81 (82)
T ss_pred eEc
Confidence 987
No 4
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.68 E-value=7.9e-17 Score=156.75 Aligned_cols=90 Identities=36% Similarity=0.739 Sum_probs=83.7
Q ss_pred CCceeeEEEEecCCCcEEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEECCeeecCCCCCeeeCCCCCe
Q 013832 22 DTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIV 101 (435)
Q Consensus 22 ~~~~~~~~f~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykF~VDg~w~~d~~~~~~~d~~G~~ 101 (435)
.....|++|+|..+++.|+|+|+|.||+..++|.+..+..|.|.+++.|++|.|+|||+|||+|++|+..|++.|..|+.
T Consensus 76 ~~~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn~ 155 (289)
T KOG1616|consen 76 REQGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGNL 155 (289)
T ss_pred cccCCceEEEecCCCceEEEecccccccccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccccCCc
Confidence 45579999999999999999999999999999988755556699999999999999999999999999999999999999
Q ss_pred eeEEEecCCC
Q 013832 102 NTVLLATEPN 111 (435)
Q Consensus 102 nnvl~v~~~~ 111 (435)
||++.|.+.+
T Consensus 156 ~N~i~v~~~~ 165 (289)
T KOG1616|consen 156 NNILEVQDPD 165 (289)
T ss_pred ccceEecCcc
Confidence 9999999887
No 5
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.68 E-value=2.3e-16 Score=146.16 Aligned_cols=115 Identities=20% Similarity=0.382 Sum_probs=101.7
Q ss_pred cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832 269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP 348 (435)
Q Consensus 269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~ 348 (435)
.|+++++++.+++||.+|++++.+++++..||+|+ + +++|++|.+||.+.++... +..
T Consensus 177 ~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~----d---k~vGiit~~dI~~aia~g~---------~~~------ 234 (294)
T COG2524 177 LMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD----D---KIVGIITLSDIAKAIANGN---------LDA------ 234 (294)
T ss_pred hccCCceEecCCccHHHHHHHHHHcCccCCceecC----C---ceEEEEEHHHHHHHHHcCC---------ccc------
Confidence 58899999999999999999999999999999963 3 6999999999999887531 112
Q ss_pred CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 013832 349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 411 (435)
Q Consensus 349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~ 411 (435)
++.+.|+++++++..|+.+++|+++|.++++.+|-|+|.+|+.+|+|||+||+..++
T Consensus 235 ------kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 235 ------KVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred ------cHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 244556789999999999999999999999999999999999999999999998654
No 6
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.66 E-value=9.8e-16 Score=144.36 Aligned_cols=171 Identities=16% Similarity=0.284 Sum_probs=125.9
Q ss_pred EEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHH----HHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHH
Q 013832 216 FVGVLSASDFILILRELGNHGSNLTEEELETHTISA----WKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKIL 291 (435)
Q Consensus 216 ~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~----~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~ 291 (435)
=+| +|.+|+-..|+.+.... +++.++++...-+. ++..... .....+|+++++++.+++++.+|.+.|.
T Consensus 200 rvg-fs~~Dld~aL~~~~E~l-DIdrddLe~llr~~elqa~~R~~~~-----LtcadIMSrdVvtv~~~ts~dhA~~ll~ 272 (382)
T COG3448 200 RVG-FSSEDLDAALQRLGETL-DIDRDDLERLLRETELQALRRRMGE-----LTCADIMSRDVVTVSTDTSIDHARKLLQ 272 (382)
T ss_pred ccC-CCHHHHHHHHHhcCcee-cCCHHHHHHHHHHHHHHHHHHHhcc-----ccHHHhcCccceecCCcCChHHHHHHHH
Confidence 345 78899999998776432 34566666542211 1111111 0113479999999999999999999999
Q ss_pred hcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCCCCCceEecCCC
Q 013832 292 HNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSA 371 (435)
Q Consensus 292 ~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~ 371 (435)
+++++.+||+|+ .. +++||+|++|+++..... + -+.++.+ ..+.+...|+.++.|+.+|+
T Consensus 273 ~H~ikaLPV~d~---~~---rl~GiVt~~dl~~~a~~~----p------~qrlr~~----~~~~vk~imt~~v~tv~pdt 332 (382)
T COG3448 273 EHRIKALPVLDE---HR---RLVGIVTQRDLLKHARPS----P------FQRLRFL----RPPTVKGIMTTPVVTVRPDT 332 (382)
T ss_pred HcCccccccccc---cc---ceeeeeeHHHHhhccCcc----h------HHHhhcc----CCCcccccccCcceeecCCC
Confidence 999999999973 33 799999999998632211 0 0111111 11235667788999999999
Q ss_pred CHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 013832 372 SLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 413 (435)
Q Consensus 372 ~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~ 413 (435)
+..+++-++.+.+.+++||+|+.|+++||||.+|++..+...
T Consensus 333 pa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~ 374 (382)
T COG3448 333 PAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRN 374 (382)
T ss_pred cHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHH
Confidence 999999999999999999999999999999999999865443
No 7
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.65 E-value=1e-15 Score=144.27 Aligned_cols=144 Identities=19% Similarity=0.353 Sum_probs=117.0
Q ss_pred HHHHHHHHHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCC
Q 013832 157 QVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHG 236 (435)
Q Consensus 157 e~~~~~i~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~ 236 (435)
|..++++++-+.+.+|.|+| |..|+++..++++.+|.++|.+|+++.+||.|+. .+++|++|++||.+....
T Consensus 232 ~~elqa~~R~~~~LtcadIM--SrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~----- 303 (382)
T COG3448 232 ETELQALRRRMGELTCADIM--SRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEH-RRLVGIVTQRDLLKHARP----- 303 (382)
T ss_pred HHHHHHHHHHhccccHHHhc--CccceecCCcCChHHHHHHHHHcCcccccccccc-cceeeeeeHHHHhhccCc-----
Confidence 56778889999999999999 6689999999999999999999999999999975 699999999999752211
Q ss_pred CCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEe
Q 013832 237 SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHI 316 (435)
Q Consensus 237 ~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGi 316 (435)
+++ +.+|- . ..+..-.+|+.++.++.|+++..+++-++.+.+.|.+||+| ..| +++||
T Consensus 304 ~p~----------qrlr~----~--~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld---~~g---~lvGI 361 (382)
T COG3448 304 SPF----------QRLRF----L--RPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD---AAG---KLVGI 361 (382)
T ss_pred chH----------HHhhc----c--CCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc---CCC---cEEEE
Confidence 111 11110 0 01111125888999999999999999999999999999997 356 89999
Q ss_pred eeHHhHHHHHHhhh
Q 013832 317 ASLSGILKCVCRYF 330 (435)
Q Consensus 317 iT~~dIl~~l~~~~ 330 (435)
+||.|++..+.++.
T Consensus 362 vsQtDliaal~r~~ 375 (382)
T COG3448 362 VSQTDLIAALYRNW 375 (382)
T ss_pred eeHHHHHHHHHHHH
Confidence 99999999988764
No 8
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.62 E-value=3.8e-15 Score=138.15 Aligned_cols=114 Identities=21% Similarity=0.353 Sum_probs=98.5
Q ss_pred CCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHh
Q 013832 179 SGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAY 258 (435)
Q Consensus 179 s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~ 258 (435)
+.++++++++.||++|.+.|++++++.+||+|. ++++|++|.+|+...+...... . .+++
T Consensus 179 s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~---~-----------kV~~---- 238 (294)
T COG2524 179 SKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLD---A-----------KVSD---- 238 (294)
T ss_pred cCCceEecCCccHHHHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCcc---c-----------cHHH----
Confidence 779999999999999999999999999999995 4899999999999988754211 0 1122
Q ss_pred hcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh
Q 013832 259 LNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR 328 (435)
Q Consensus 259 ~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~ 328 (435)
.|++.++++..++.++||+++|..+++.|+.|+|+ .| +.+||||..|||+.++.
T Consensus 239 ----------~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds---~g---kpvGiITrTDIL~~ia~ 292 (294)
T COG2524 239 ----------YMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS---NG---KPVGIITRTDILTRIAG 292 (294)
T ss_pred ----------HhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc---CC---cEEEEEehHHHHHHhhc
Confidence 27899999999999999999999999999999974 34 79999999999988763
No 9
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.59 E-value=4.6e-14 Score=142.77 Aligned_cols=198 Identities=15% Similarity=0.187 Sum_probs=150.5
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
..+.+.+..++.+|...+.+++++++||.|.+.+.++.++|+.-++..+....... ....+...++..+
T Consensus 163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~---~~~~~l~~s~~dl-------- 231 (381)
T KOG1764|consen 163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLL---PLPSLLSKSLSDL-------- 231 (381)
T ss_pred CceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhccc---ccHHHhhCCHHHh--------
Confidence 33899999999999999999999999999977889999999999988887665432 1223333333221
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccc
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPIL 340 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~ 340 (435)
+.| ....+..+..++++.+|+++|.+.+++.+||++. .| +.+|+++..|+........- ..+
T Consensus 232 ----~ig--~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~---~g---~~v~~~s~~Dv~~l~~~~~~------~~~ 293 (381)
T KOG1764|consen 232 ----GIG--TWSNIASISEDTPVIEALKIMSERRISALPVVDE---NG---KKVGNYSRFDVIHLAREGTY------NNL 293 (381)
T ss_pred ----Ccc--hhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC---CC---ceecceehhhhhhhhhcCcc------Ccc
Confidence 112 3357889999999999999999999999999963 34 57999999999766554311 111
Q ss_pred ccc-cccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 013832 341 KLP-ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 413 (435)
Q Consensus 341 ~~~-v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~ 413 (435)
..+ +.+ +.. .......++++|+++.+|.++++.|..+++++++|||++|.++|+||.+|++..+...
T Consensus 294 ~~~~l~~-----~~~-~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 294 DLSCLSE-----ALS-HRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred chhHHHH-----Hhh-hcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence 122 211 110 0011223699999999999999999999999999999999999999999999987654
No 10
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.56 E-value=3.8e-14 Score=116.28 Aligned_cols=95 Identities=20% Similarity=0.332 Sum_probs=83.8
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
.++++.+++++.+|++.|.+++++.+||+++ +++ +++|++|..|+++.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~--~~~---~~~Givt~~Dl~~~~~------------------------- 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDS--RKQ---QFVGMLTITDFILILR------------------------- 51 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeC--CCC---EEEEEEEHHHHhhhee-------------------------
Confidence 4688999999999999999999999999963 235 7999999999965211
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~-g~lvGiis~~DI~~ 408 (435)
+.++.+++++.+|+++|.+++++++||+|++ |+++|++|++||+.
T Consensus 52 -----------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 -----------LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred -----------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 3579999999999999999999999999987 99999999999874
No 11
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=9.8e-14 Score=117.31 Aligned_cols=118 Identities=21% Similarity=0.321 Sum_probs=92.1
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
+++++.+++++.+|++.|.+++++++||+++ .| +++|+++.+|+++++..+.... ...++.+...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~---~~---~~~Giv~~~dl~~~~~~~~~~~------~~~~~~~~~~--- 66 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE---NG---KVVDVYSRFDVINLAKEGAYNN------LDLTVGEALE--- 66 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC---CC---eEEEEEeHHHHHHHHhcCcccc------ccCCHHHHHh---
Confidence 5789999999999999999999999999963 45 7999999999997654321110 0111221100
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
....+.+++.++.+++++.+|+++|.+++++.+||||++|+++|+||++|++.
T Consensus 67 ---~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 67 ---RRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred ---hcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 11223357889999999999999999999999999998899999999999875
No 12
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.55 E-value=4.7e-14 Score=115.70 Aligned_cols=97 Identities=46% Similarity=0.726 Sum_probs=84.9
Q ss_pred CCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhh
Q 013832 180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL 259 (435)
Q Consensus 180 ~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~ 259 (435)
+++++++++.|+.+|++.|.++++.++||+|+++++++|++|..|++..+
T Consensus 1 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~------------------------------ 50 (98)
T cd04618 1 SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL------------------------------ 50 (98)
T ss_pred CeEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe------------------------------
Confidence 36889999999999999999999999999997557999999999985311
Q ss_pred cccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
. ++++.|++++.+|+++|.+++++++||+++ ++| +++|++|.+||++
T Consensus 51 -----------~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~---~~~giit~~d~~~ 97 (98)
T cd04618 51 -----------R--LVSIHPERSLFDAALLLLKNKIHRLPVIDP--STG---TGLYILTSRRILK 97 (98)
T ss_pred -----------e--eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC--CCC---CceEEeehhhhhc
Confidence 1 568999999999999999999999999974 235 7999999999975
No 13
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.50 E-value=6.4e-13 Score=141.66 Aligned_cols=209 Identities=14% Similarity=0.216 Sum_probs=139.8
Q ss_pred CceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccH
Q 013832 170 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTI 249 (435)
Q Consensus 170 ~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i 249 (435)
.++.|+|. .+++++++++++.+|+++|.+++++.+||+|++ ++++|++|..|+...+...... . .+.....
T Consensus 68 ~~V~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~-~-----~~~~~~~ 138 (546)
T PRK14869 68 PQVRDLEI--DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDP-E-----ILSKSPT 138 (546)
T ss_pred CcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcch-h-----hhhhcCC
Confidence 57888874 478899999999999999999999999999964 8999999999999866543210 0 0000000
Q ss_pred HHHHHHHHhhccc--------c--cC------------CCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCC
Q 013832 250 SAWKEGKAYLNRQ--------I--DS------------HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQD 307 (435)
Q Consensus 250 ~~~~e~~~~~~~~--------~--~~------------~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~ 307 (435)
.+.++...++.. . .+ ...+....++.+.... +++..+++.+++.++|..+..-.
T Consensus 139 -t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~---d~~~~ai~~~~~~lIlt~g~~~~ 214 (546)
T PRK14869 139 -SLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDRE---DIQLAAIEAGVRLLIITGGAPVS 214 (546)
T ss_pred -CHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcH---HHHHHHHHcCCCEEEECCCCCCC
Confidence 001110000000 0 00 0001122455554333 44556788999999998642200
Q ss_pred CC------CCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCCC-CCceEecCCCCHHHHHHHH
Q 013832 308 GS------FPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR-RPLAMLRPSASLSAALNLL 380 (435)
Q Consensus 308 g~------~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~-~~v~tv~~d~~L~~a~~~m 380 (435)
.. ...+..|.|..|..+....-. +..+|.++ |. ++++++++++++.+|.++|
T Consensus 215 ~~v~~la~~~~i~ii~t~~dt~~t~~~l~---------~~~~V~~i------------M~~~~~~~~~~~~~~~~~~~~m 273 (546)
T PRK14869 215 EDVLELAKENGVTVISTPYDTFTTARLIN---------QSIPVSYI------------MTTEDLVTFSKDDYLEDVKEVM 273 (546)
T ss_pred HHHHHHHHhCCCeEEEecccHHHHHHHhh---------cCCCHHHh------------ccCCCcEEECCCCcHHHHHHHH
Confidence 00 003778888888877655321 12344444 44 5789999999999999999
Q ss_pred HHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832 381 VQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (435)
Q Consensus 381 ~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~ 412 (435)
.+++++++||||++|+++|++|++|+++..++
T Consensus 274 ~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~ 305 (546)
T PRK14869 274 LKSRYRSYPVVDEDGKVVGVISRYHLLSPVRK 305 (546)
T ss_pred HhcCCCceEEEcCCCCEEEEEEHHHhhccccC
Confidence 99999999999999999999999999986654
No 14
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=4.2e-13 Score=113.92 Aligned_cols=120 Identities=16% Similarity=0.262 Sum_probs=91.4
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
++.++.+++++.+|++.|.+++++++||+++ ..+ +++|+++..|+++++..+.............++.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~------- 69 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE--ESG---EVIGILSQRRLVEFLWENARSFPGLDPLYPIPLR------- 69 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeC--CCC---cEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhh-------
Confidence 5678999999999999999999999999973 225 7999999999998775432211100000000010
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT 407 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~ 407 (435)
..+.+.+++.++++++++.+|+++|.+++++++||+|++|+++|+||++||.
T Consensus 70 ---~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 70 ---DLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred ---hcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 0112345888999999999999999999999999999989999999999985
No 15
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.49 E-value=3.4e-13 Score=112.57 Aligned_cols=108 Identities=14% Similarity=0.274 Sum_probs=88.6
Q ss_pred ceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccc
Q 013832 274 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 353 (435)
Q Consensus 274 ~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~ 353 (435)
++++.+++++.+|++.|.+++.+.+||+++ ++ +++|++|..|+++.... .+...++.++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~---------~~~~~~v~~~------ 61 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVVDE---EN---KVLGQVTLSDLLEIGPN---------DYETLKVCEV------ 61 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHhhccc---------cccccChhhe------
Confidence 568899999999999999999999999963 45 79999999999763211 0112334443
Q ss_pred cccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 354 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 354 ~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
|..++.++.+++++.+|+++|.+++.+.+||||++|+++|+||++|+++
T Consensus 62 ------~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 62 ------YIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred ------eecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 2347789999999999999999999999999998899999999999975
No 16
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.48 E-value=7.5e-13 Score=110.91 Aligned_cols=111 Identities=19% Similarity=0.267 Sum_probs=90.7
Q ss_pred ceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccc
Q 013832 274 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 353 (435)
Q Consensus 274 ~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~ 353 (435)
+.++.+++++.+|++.|.+++...+||+++ +| +++|++|..++++.+...... ....++.++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~g---~~~G~vt~~dl~~~~~~~~~~------~~~~~v~~~------ 64 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDP---HG---KLAGVLTKTDVVRQMGRCGGP------GCTAPVENV------ 64 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEehHHHHHHHhhcCCC------cccCCHHHH------
Confidence 567899999999999999999999999963 45 799999999998765431000 112333333
Q ss_pred cccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 354 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 354 ~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.++++++.+++++.+|++.|.+++...+||+|++|+++|+|+++|++.
T Consensus 65 ------~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 65 ------MTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred ------hcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 3357889999999999999999999999999998899999999999874
No 17
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.46 E-value=5.4e-13 Score=112.46 Aligned_cols=113 Identities=22% Similarity=0.349 Sum_probs=89.9
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
+++++.+++++.+|++.|.++++..+||++. .+ +++|++|..+|++...... . ....++.+++. .
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~Givt~~dl~~~~~~~~-~------~~~~~~~~~~~--~ 66 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE---DG---DLVGVVSRKDLLKASIGGA-D------LQKVPVGVIMT--R 66 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHcCC-C------ccCCCHHHHhC--C
Confidence 5678999999999999999999999999963 34 7999999999988764221 0 01122333321 0
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC---CcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~---g~lvGiis~~DI~~ 408 (435)
..++.++++++++.+|+++|.+++++.+||||++ |+++|+||++||++
T Consensus 67 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 67 --------MPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred --------CCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 0267899999999999999999999999999987 69999999999875
No 18
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=7e-13 Score=112.25 Aligned_cols=122 Identities=20% Similarity=0.355 Sum_probs=93.5
Q ss_pred CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (435)
Q Consensus 272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt 351 (435)
++++++.+++++.++++.|.+++++++||+++ +| +++|+++..++++++...... .....+.......
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~--~~~~~~~~~~~~~---- 69 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDG---DR---RLVGIVTQRDLLRHARPDGRR--PLRGRLRGRDKPE---- 69 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECC---CC---CEEEEEEHHHHHhhhcccccc--hhhhhhhcccccc----
Confidence 56789999999999999999999999999963 35 799999999998766532110 0000000000011
Q ss_pred cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
.+++.+.++++++.+++++.+|+++|.+++.+.+||+|++|+++|+|+++|+++
T Consensus 70 ---~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 70 ---TVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred ---cHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 123344568899999999999999999999999999998999999999999875
No 19
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.44 E-value=6.3e-13 Score=114.96 Aligned_cols=116 Identities=20% Similarity=0.384 Sum_probs=94.6
Q ss_pred cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832 269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP 348 (435)
Q Consensus 269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~ 348 (435)
+|.+|++++.|++++.+|+++|.+++++.+||++. + +++|-||+++|.+.+.+.... .-+..+++
T Consensus 70 iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~----~---k~VGsItE~~iv~~~le~~e~------i~~~~vr~-- 134 (187)
T COG3620 70 IMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE----D---KVVGSITENDIVRALLEGMES------IRSLRVRE-- 134 (187)
T ss_pred hccCCeeEECchhhHHHHHHHHHHcCCccCceeeC----C---eeeeeecHHHHHHHHhccccc------hhhhhHHH--
Confidence 69999999999999999999999999999999962 4 799999999999987654211 11233333
Q ss_pred CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832 349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (435)
Q Consensus 349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~ 412 (435)
.|..+++++++++++..+-.++.. ..++-|+ ++|+++||||+.||+++++.
T Consensus 135 ----------vM~e~fP~Vs~~~~l~vI~~LL~~--~~AVlV~-e~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 135 ----------VMGEPFPTVSPDESLNVISQLLEE--HPAVLVV-ENGKVVGIITKADIMKLLAG 185 (187)
T ss_pred ----------HhcCCCCcCCCCCCHHHHHHHHhh--CCeEEEE-eCCceEEEEeHHHHHHHHhc
Confidence 345689999999999888888755 4567788 58999999999999998764
No 20
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=3e-12 Score=107.03 Aligned_cols=112 Identities=17% Similarity=0.288 Sum_probs=90.6
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
+++++.+++++.+|++.|.+++.+.+||+++ ..+ +++|++|.+|+++.+...... ....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~~~----- 65 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR--RES---DAYGIVTMRDILKKVVAEGRD------PDRVNVYEI----- 65 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CCC---cEEEEEehHHHHHHHHhCCCC------CCccCHHHH-----
Confidence 4678999999999999999999999999963 224 799999999998866532111 011233333
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
|.+++.++++++++.+|+++|.+++...+||+|+ |+++|+|++.||++
T Consensus 66 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 66 -------MTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred -------hcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 2357889999999999999999999999999997 99999999999875
No 21
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.42 E-value=1.7e-12 Score=105.86 Aligned_cols=94 Identities=17% Similarity=0.296 Sum_probs=83.0
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
+++++.+++++.+|++.|.+++++.+||++. .| +++|+++.+|+++..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~-------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD---DG---KLSGIITERDLIAKS-------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEEHHHHhcCC--------------------------
Confidence 5678999999999999999999999999963 35 799999999996410
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
.+.++.+++++.+|+++|.+++++.+||+|++|+++|+||++||++
T Consensus 50 ----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 50 ----------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred ----------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 1457899999999999999999999999998899999999999975
No 22
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=3.6e-12 Score=105.53 Aligned_cols=108 Identities=23% Similarity=0.449 Sum_probs=90.5
Q ss_pred CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (435)
Q Consensus 272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt 351 (435)
++++++.+++++.+|++.|.+++.+.+||+++ +| +++|++|..++++.+.... .++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~-----------~~~~~~---- 60 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE---DG---RLVGIVTSWDISKAVARDK-----------KSVEDI---- 60 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECC---CC---cEEEEEeHHHHHHHHhhCc-----------cCHHHh----
Confidence 56788999999999999999999999999963 35 7999999999987654321 112222
Q ss_pred cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.+++.++.+++++.+|++.|.+++.+.+||++++|+++|++++.||++
T Consensus 61 --------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 61 --------MTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred --------cCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 2247888999999999999999999999999999999999999999875
No 23
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=5.7e-12 Score=106.44 Aligned_cols=119 Identities=23% Similarity=0.298 Sum_probs=90.2
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++++++++.++.+|++.|.++++..+||+|. +++++|++|..|+...+.......... .+ .+.+...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~~~~~~--------~~---~~~~~~~- 68 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAYNNLDL--------TV---GEALERR- 68 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCccccccC--------CH---HHHHhhc-
Confidence 4678999999999999999999999999986 589999999999986543211100000 01 1100000
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC 325 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~ 325 (435)
..|..++.++.+++++.+|++.|.+++++.+||++. .| +++|++|++|++++
T Consensus 69 -------~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~---~~---~~~Givt~~di~~~ 120 (120)
T cd04641 69 -------SQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE---NK---RVEGIISLSDILQF 120 (120)
T ss_pred -------ccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC---CC---CEEEEEEHHHhhcC
Confidence 024567889999999999999999999999999963 35 79999999999753
No 24
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=5.7e-12 Score=105.06 Aligned_cols=109 Identities=19% Similarity=0.356 Sum_probs=89.3
Q ss_pred ceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccc
Q 013832 274 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 353 (435)
Q Consensus 274 ~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~ 353 (435)
.+++.+++++.+|++.|.+.+.+.+||+++ ++ +++|++|.+|+++.+..... ...++.++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~~--------~~~~v~~~------ 63 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDE---NG---RLLGTVTDGDIRRALLKGLS--------LDDPVSEV------ 63 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECC---CC---CEEEEEEcHHHHHHHhcCCC--------cCCCHHHh------
Confidence 467899999999999999999999999963 35 79999999999876543210 12233333
Q ss_pred cccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 354 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 354 ~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+..++.++.+++++.+|+++|.+++.+.+||||++|+++|+||++||+.
T Consensus 64 ------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 64 ------MNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred ------hcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 2346788999999999999999999999999998899999999999863
No 25
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=4.7e-12 Score=108.01 Aligned_cols=121 Identities=17% Similarity=0.276 Sum_probs=91.1
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccc---cccC
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC---AIPV 349 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~---~l~i 349 (435)
.++++.+++++.+|++.|.++++..+||++. .| +++|+++..|+++......... ..++. ++..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~-------~~~~~~~~~~~~ 68 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE---KG---KLIGNISASDLKGLLLSPDDLL-------LYRTITFKELSE 68 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECC---CC---cEEEEEEHHHhhhhhcCcchhh-------cccchhhhhhhh
Confidence 3678999999999999999999999999963 35 7999999999988664321100 00000 0000
Q ss_pred cccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 350 gt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
.. ....+.+.+++.++.+++++.+|+++|.+++++++||||++|+++|+||.+||++
T Consensus 69 -~~-~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 69 -KF-TDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred -hc-ccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 00 0011234468899999999999999999999999999998899999999999875
No 26
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=3.1e-12 Score=106.85 Aligned_cols=111 Identities=14% Similarity=0.256 Sum_probs=88.0
Q ss_pred CceEeCCCCCHHHHHHHHHhcC-CcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832 273 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~-v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt 351 (435)
++.++.+++++.+|++.|.+++ .+.+||+++ .+ +++|+++..||++...... ...++.+++.
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~---------~~~~v~~~~~-- 64 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN---EG---RYVGIISLADLRAIPTSQW---------AQTTVIQVMT-- 64 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcC---CC---cEEEEEEHHHHHHHHHhhc---------cccchhhhhc--
Confidence 5678999999999999998775 899999963 34 7999999999987654221 1233443321
Q ss_pred cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
. ..++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++..||++
T Consensus 65 ~--------~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 65 P--------AAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred c--------cccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 0 013568999999999999999999999999998899999999999874
No 27
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.39 E-value=1.3e-12 Score=111.64 Aligned_cols=113 Identities=12% Similarity=0.194 Sum_probs=91.2
Q ss_pred CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (435)
Q Consensus 272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt 351 (435)
++++++.++.++.+|++.|.+++++.+||++. ++ +++|++|..++++.+...... ...++.++
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~Gii~~~dl~~~~~~~~~~-------~~~~v~~i---- 64 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE---SG---KILGMVTLGNLLSSLSSGKVQ-------PSDPVSKA---- 64 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHHhccC-------CCCcHHHH----
Confidence 46788999999999999999999999999963 34 799999999998876543111 12344444
Q ss_pred cccccCCCCCCCceEecCCCCHHHHHHHH---------HHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 013832 352 WVPKIGEPNRRPLAMLRPSASLSAALNLL---------VQAQVSSIPIVDDNDSLLDIYCRSDITAL 409 (435)
Q Consensus 352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m---------~~~~i~~lPVVD~~g~lvGiis~~DI~~~ 409 (435)
|.+++.++.+++++.+|.++| .+.+.+++||+|++|+++|+||++||+++
T Consensus 65 --------m~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 65 --------LYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred --------hhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 446888999999999999965 34478899999988999999999999875
No 28
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=5.3e-12 Score=104.69 Aligned_cols=109 Identities=23% Similarity=0.447 Sum_probs=90.3
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
+++++.+++++.+|++.|.+.+...+||++. +| +++|+++..++++++..... ..++.++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~---------~~~v~~~----- 61 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDG---DG---HLVGLLTRDDLIRALAEGGP---------DAPVRGV----- 61 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECC---CC---cEEEEeeHHHHHHHHHhcCC---------CCcHHHH-----
Confidence 4677899999999999999899999999963 35 79999999999887653211 1233333
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.+++.++.+++++.+|++.|.+++...+||+|++|+++|++|++||..
T Consensus 62 -------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 62 -------MRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred -------hcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 2347889999999999999999999999999998899999999999874
No 29
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=9.7e-12 Score=103.05 Aligned_cols=111 Identities=20% Similarity=0.393 Sum_probs=90.3
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
+++++.++.++.+|++.|.+++++++||+++ ++ +++|+++..++++++...... ....++.++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~------~~~~~~~~~----- 64 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD---GG---RLVGIFSERDIVRKVALRGAS------ALDTPVSEI----- 64 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEehHHHHHHHhhcCCC------ccccCHHHh-----
Confidence 4678899999999999999999999999963 34 799999999999877543111 001233332
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.+++.++.+++++.+++++|.+.+.+.+||+++ |+++|+||.+||++
T Consensus 65 -------~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 65 -------MTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred -------cCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 3357889999999999999999999999999997 99999999999874
No 30
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.38 E-value=7.3e-12 Score=102.95 Aligned_cols=104 Identities=14% Similarity=0.184 Sum_probs=86.4
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
+++++.++.++.+|++.|.+++.+.+||+++ +| +++|++|..||++... .++.++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~---~g---~~~Giv~~~dl~~~~~--------------~~~~~~----- 56 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA---DG---QPLGFVTRREAARASG--------------GCCGDH----- 56 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEeHHHHHHhcc--------------cchhhh-----
Confidence 4568899999999999999999999999962 45 7999999999975321 112222
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.++..++.+++++.+|+++|.++++..+||+|++|+++|+|+++|+++
T Consensus 57 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 57 -------AEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred -------cccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 2245678999999999999999999999999999899999999999874
No 31
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.38 E-value=7.8e-12 Score=103.66 Aligned_cols=109 Identities=15% Similarity=0.265 Sum_probs=89.1
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
+++++.++.++.+|++.|.+.+.+.+||+++ ..+ +++|+++..++++++..... ..++..+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~--~~~---~~~G~v~~~~l~~~~~~~~~---------~~~~~~~----- 62 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDG--DLD---NIIGVVHVKDLLRALAEGEE---------DLDLRDL----- 62 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECC--CCc---eEEEEEEHHHHHHHHHcCCC---------cCCHHHH-----
Confidence 3678999999999999999999999999963 215 79999999999987643210 0122222
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+ +++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|++|+++
T Consensus 63 ~--------~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 63 L--------RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred h--------cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 1 36788999999999999999999999999999899999999999874
No 32
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=1.2e-11 Score=102.80 Aligned_cols=110 Identities=20% Similarity=0.410 Sum_probs=90.8
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
++.++.+++++.+|.+.|.+.+.+.+||+++ ++ +++|+++..++++.+..... ...++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~l~~~~~~~~~--------~~~~v~~~----- 62 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP---DE---RPIGIVTERDIVRAVAAGID--------LDTPVSEI----- 62 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---CEEEEeeHHHHHHHHhccCC--------CccCHHHh-----
Confidence 4678899999999999999999999999963 35 79999999999887654321 12233333
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.++++++.+++++.+++++|.++++..+||+|++|+++|+++++||++
T Consensus 63 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 63 -------MTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred -------ccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 2347889999999999999999999999999998899999999999873
No 33
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=5e-12 Score=105.55 Aligned_cols=114 Identities=18% Similarity=0.319 Sum_probs=88.3
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
.++++.+++++.+|++.|.+++++.+||++. ++ +++|+++.+++++++........ ..+...++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~--~~~~~~~v~~------ 67 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK---EG---KYVGTISLTDILWKLKGLENLDL--ERLVDLKVID------ 67 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC---CC---cEEEEEeHHHHHHHhhccCchhH--HHHhCCcHHH------
Confidence 4678999999999999999999999999962 45 79999999999987753211100 0000122332
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
.+.+++.++.+++++.+|+++|.+++ .+||+|++|+++|+||+.|+++
T Consensus 68 ------~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 68 ------VMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred ------HhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 23457889999999999999998865 5999999999999999999875
No 34
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.37 E-value=8.1e-12 Score=104.45 Aligned_cols=111 Identities=17% Similarity=0.355 Sum_probs=89.8
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
++.++.+++++.+|++.|.+.+++.+||+++ .+ +++|+++..|+++.+...... ...++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~~~-------~~~~~~~~----- 63 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDR---DG---GVVGIITLPDLLRALEADEAG-------EPSAVDEV----- 63 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC---CC---CEEEEEEHHHHHHHHhccccc-------ccccHHHh-----
Confidence 4567889999999999999999999999963 35 799999999998866532100 01122222
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN--DSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~--g~lvGiis~~DI~~ 408 (435)
+.+++.++.+++++.+|+++|.+++.+.+||+|++ |+++|+||++||+.
T Consensus 64 -------~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 64 -------ATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred -------ccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 23578889999999999999999999999999987 89999999999975
No 35
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=5.6e-12 Score=107.51 Aligned_cols=125 Identities=26% Similarity=0.351 Sum_probs=91.0
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
+++++++++++.+|++.|.++++..+||+|+. ++++|+++..|+.............. ... . . ........
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~-~~~---~-~-~~~~~~~~-- 72 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYR-TIT---F-K-ELSEKFTD-- 72 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhccc-chh---h-h-hhhhhccc--
Confidence 67889999999999999999999999999975 89999999999987543111100000 000 0 0 00000000
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC 325 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~ 325 (435)
....+..+++++.+++++.+|+++|.+++.+++||+++ ++ +++|++|.+||++|
T Consensus 73 -----~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~---~~---~~~Giit~~dil~~ 126 (126)
T cd04642 73 -----SDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDE---EG---KPIGVITLTDIISI 126 (126)
T ss_pred -----ccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC---CC---CEEEEEEHHHHhcC
Confidence 00125678899999999999999999999999999963 35 79999999999864
No 36
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.36 E-value=4.2e-12 Score=129.66 Aligned_cols=118 Identities=20% Similarity=0.317 Sum_probs=101.0
Q ss_pred cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832 269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP 348 (435)
Q Consensus 269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~ 348 (435)
.+..++++|+|..|+.+|+.+|.+.|++++.+++. ++ ..+||+|.+|+.+.+....+. ..++|
T Consensus 154 ~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~---~~---~~~GIvT~~dl~~~v~~~g~~-------~~~~V---- 216 (610)
T COG2905 154 VKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD---SG---PLLGIVTRKDLRSRVIADGRS-------KTQKV---- 216 (610)
T ss_pred HhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC---CC---CccceeehHHHHHHHHhcCCC-------cccch----
Confidence 46789999999999999999999999999999963 34 689999999999888764222 12333
Q ss_pred CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832 349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (435)
Q Consensus 349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~ 412 (435)
++.|..|++++...+.+++|+-+|.+++|+++||++ +|+++|+|+.+||+++...
T Consensus 217 --------~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 217 --------SEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQ 271 (610)
T ss_pred --------hhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCC
Confidence 444567999999999999999999999999999996 6999999999999999884
No 37
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.2e-11 Score=104.35 Aligned_cols=118 Identities=21% Similarity=0.451 Sum_probs=91.8
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCc--cccccccccccCc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL--PILKLPICAIPVG 350 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~--~~~~~~v~~l~ig 350 (435)
+++++.+++++.+|++.|.+.+++.+||++. +| +++|+++..+|++++........... .....++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~----- 70 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE---DG---KLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVA----- 70 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECC---CC---CEEEEEEHHHHHHHhccccccccccccccccCcCHH-----
Confidence 4678999999999999999999999999963 35 79999999999987654321100000 00011222
Q ss_pred ccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 351 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 351 t~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.+.++++++.+++++.+|+++|.+++.+.+||+|++|+++|++|+.||+.
T Consensus 71 -------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 71 -------EVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred -------HhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 223457889999999999999999999999999998899999999999975
No 38
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.35 E-value=9e-12 Score=124.38 Aligned_cols=115 Identities=16% Similarity=0.192 Sum_probs=93.1
Q ss_pred cCCC--CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccc
Q 013832 269 AFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 346 (435)
Q Consensus 269 ~~~~--~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~ 346 (435)
+|.+ +++++.+++++.+|++.|.+++...+||++ ++| +++|++|.+|+.+.+.... .+...++.+
T Consensus 207 im~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd---~~g---~lvGivt~~Dl~~~~~~~~-------~~~~~~v~~ 273 (326)
T PRK10892 207 IMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICD---DNM---KIEGIFTDGDLRRVFDMGI-------DLRQASIAD 273 (326)
T ss_pred HhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEc---CCC---cEEEEEecHHHHHHHhcCC-------CcccCCHHH
Confidence 4665 899999999999999999999988888885 345 7999999999977543210 111233443
Q ss_pred ccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 013832 347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 409 (435)
Q Consensus 347 l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~ 409 (435)
+ |.++++++.+++++.+|+++|.+++++++||+| +|+++|+||++||++.
T Consensus 274 i------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 274 V------------MTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred h------------cCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 3 446889999999999999999999999999998 5899999999999863
No 39
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.35 E-value=1.8e-11 Score=102.25 Aligned_cols=110 Identities=22% Similarity=0.362 Sum_probs=86.7
Q ss_pred CceEeCCCCCHHHHHHHHHhcC-CcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832 273 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~-v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt 351 (435)
++.++.++.++.+|++.|.+++ ...+||.+ .+ +++|+++..|+++++..... ....++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~-------~~~~~i~~~---- 63 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE----KG---RLLGIFTERDIVRLTAIGKD-------LSDLPIGEV---- 63 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC----CC---cEEEEEeHHHHHHHHhcCCC-------ccccCHHHh----
Confidence 4567899999999999998888 66677774 24 79999999999886643210 011233333
Q ss_pred cccccCCCCCCCceEecCC--CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 352 WVPKIGEPNRRPLAMLRPS--ASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 352 ~~~~~g~~~~~~v~tv~~d--~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.++++++.++ +++.+|+++|.+++.+.+||+|++|+++|+||++||++
T Consensus 64 --------~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 64 --------MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred --------cCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 23477888887 78999999999999999999999899999999999975
No 40
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.35 E-value=1.5e-11 Score=102.64 Aligned_cols=111 Identities=26% Similarity=0.507 Sum_probs=93.1
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832 270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV 349 (435)
Q Consensus 270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i 349 (435)
+...++++.++.++.+|...|.++++..+||++. . +++|++|.+|+++.+....... .++.+
T Consensus 5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~----~---~l~Giit~~di~~~~~~~~~~~--------~~v~~--- 66 (117)
T COG0517 5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD----G---KLVGIITERDILRALAAGGKRL--------LPVKE--- 66 (117)
T ss_pred ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhccCCcc--------ccHHH---
Confidence 4477899999999999999999999999999952 2 5999999999999887543220 02222
Q ss_pred cccccccCCCCCCCceEecCCCCHHHHHHHHHH-cCCCEEEEEcCCC-cEEEEEeHHHHH
Q 013832 350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQ-AQVSSIPIVDDND-SLLDIYCRSDIT 407 (435)
Q Consensus 350 gt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~-~~i~~lPVVD~~g-~lvGiis~~DI~ 407 (435)
.|.++++++.+++++.+|+++|.+ ++++++||+|+++ +++|++|++|++
T Consensus 67 ---------v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 67 ---------VMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred ---------hccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 234588999999999999999999 7999999999986 999999999973
No 41
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.35 E-value=2.2e-11 Score=100.72 Aligned_cols=108 Identities=23% Similarity=0.422 Sum_probs=89.4
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
+++++.+++++.+|++.|.+++++.+||++ + + +++|+++..++++....... ..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~~l~~~~~~~~~---------~~~v~~~----- 60 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVD---D-G---KLVGIVTLSDIAHAIARGLE---------LAKVKDV----- 60 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEEHHHHHHHHhcccc---------ccCHHHH-----
Confidence 567899999999999999999999999996 2 5 79999999999876543210 1223332
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+..++.++.+++++.+++++|.+.+++.+||+|++|+++|+|++.||++
T Consensus 61 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 61 -------MTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred -------hcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 2347889999999999999999999999999998899999999999874
No 42
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.34 E-value=1.4e-11 Score=103.44 Aligned_cols=120 Identities=19% Similarity=0.290 Sum_probs=91.2
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
++.++.++.++.+|++.|.+.+...+||+++ + +++|+++..+++++.......... .+...+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~i~~~~l~~~~~~~~~~~~~---------~~~~~~~~ 65 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR----G---KLVGIVTDRDLKLASPSKATTLDI---------WELYYLLS 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC----C---eEEEEEeHHHHHHhhhcccccccc---------hhhhhhhc
Confidence 4678899999999999999999999999962 5 799999999998876532211100 00000000
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
...+.+.+.+++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||+.||++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 66 KIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred ccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 00122334467889999999999999999999999999998899999999999975
No 43
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.34 E-value=3.3e-11 Score=125.41 Aligned_cols=180 Identities=13% Similarity=0.168 Sum_probs=124.7
Q ss_pred ceeeeeeCCCCeEEEeeehHHHHHHHHHhccCC---CCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCC
Q 013832 204 SMAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPN 280 (435)
Q Consensus 204 ~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~---~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~ 280 (435)
..+|++.+ ....+|..++...+++.+--+ .+++.+ .+.+....... ...|.++++++.++
T Consensus 43 l~~Pi~sa----~Mdtvt~~~MAiaLAr~GGiGvih~nl~~~--------~q~~~l~~VKv-----~~iMi~~pvtv~~d 105 (479)
T PRK07807 43 TTIPLVVA----NMTAVAGRRMAETVARRGGLVVLPQDIPID--------VVAEVVAWVKS-----RDLVFDTPVTLSPD 105 (479)
T ss_pred cccceeec----CCcchhHHHHHHHHHHCCCceEeeCCCCHH--------HHHHHHhhccc-----ccccccCCeEECCC
Confidence 44788864 255677778777776654111 233322 22222111111 12477899999999
Q ss_pred CCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCC
Q 013832 281 DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPN 360 (435)
Q Consensus 281 ~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~ 360 (435)
+++.+|++.|.+++++.+||+| +++ +++|+||.+|+... .. ..++.++ |
T Consensus 106 ~tv~eA~~~m~~~~~s~l~VVD---~~g---klvGIVT~rDL~~~-----~~--------~~~V~di------------M 154 (479)
T PRK07807 106 DTVGDALALLPKRAHGAVVVVD---EEG---RPVGVVTEADCAGV-----DR--------FTQVRDV------------M 154 (479)
T ss_pred CCHHHHHHHHHhcCCceEEEEC---CCC---eEEEEEeHHHHhcC-----cc--------CCCHHHh------------c
Confidence 9999999999999999999996 245 79999999998321 00 1334444 3
Q ss_pred CCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCCCCCccHHHHHhhh
Q 013832 361 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQVTIVS 432 (435)
Q Consensus 361 ~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~~~l~~~~~~v~~~l~~~ 432 (435)
.++++++++++++.+|+++|.+++++.+||||++|+++|+||++||++......... .=..+.|..+...+
T Consensus 155 t~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~-~~g~l~V~aav~~~ 225 (479)
T PRK07807 155 STDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVD-AAGRLRVAAAVGIN 225 (479)
T ss_pred cCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhh-hhhccchHhhhccC
Confidence 458999999999999999999999999999999999999999999998765542111 00134556655443
No 44
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.34 E-value=1.2e-11 Score=123.15 Aligned_cols=115 Identities=14% Similarity=0.180 Sum_probs=95.2
Q ss_pred cCCCC--ceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccc
Q 013832 269 AFPRP--LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 346 (435)
Q Consensus 269 ~~~~~--~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~ 346 (435)
+|.++ ++++.+++++.+|++.|.+.+...+||+|+ +| +++|++|..|+.+.+.... ....++.+
T Consensus 202 im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~---~g---~~iG~vt~~dl~~~~~~~~--------~~~~~v~~ 267 (321)
T PRK11543 202 LMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA---QQ---QVQGVFTDGDLRRWLVGGG--------ALTTPVNE 267 (321)
T ss_pred HhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEecHHHHHHHHhCCC--------CcCCcHHH
Confidence 36676 999999999999999999999999999963 45 7999999999987654210 01223333
Q ss_pred ccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 013832 347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 409 (435)
Q Consensus 347 l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~ 409 (435)
+ |.+++.++.+++++.+|+++|.++++..+||||++|+++|+||++||+++
T Consensus 268 i------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 268 A------------MTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred h------------cCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 3 34578899999999999999999999999999988999999999999863
No 45
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=2.5e-11 Score=100.50 Aligned_cols=108 Identities=19% Similarity=0.389 Sum_probs=89.7
Q ss_pred CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (435)
Q Consensus 272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt 351 (435)
++++++.++.++.+|.+.|.+.+...+||++ + + +++|+++..++++.+.... ...++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~dl~~~~~~~~---------~~~~~~~~---- 61 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVE---G-G---RVVGIISRRDVEKALRHGL---------GHAPVKDY---- 61 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEee---C-C---EEEEEEEHHHHHHHHhccc---------ccCcHHHH----
Confidence 4678899999999999999999999999996 2 4 7999999999987653221 12334433
Q ss_pred cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.++..++.+++++.+|+++|.+++.+.+||+| +|+++|+||+.||++
T Consensus 62 --------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 62 --------MSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred --------hcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 234778899999999999999999999999999 789999999999874
No 46
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=1.9e-11 Score=101.47 Aligned_cols=109 Identities=15% Similarity=0.303 Sum_probs=88.9
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
++.++.+++++.+|++.|.+.+.+.+||+++ .| +++|+++..|++.+..... ....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~--------~~~~~v~~~----- 62 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN---EE---KLKGVVTFTDILDLDLFES--------FLEKKVFNI----- 62 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcC---CC---CEEEEEehHHhHHHHhhcc--------cccCcHHHH-----
Confidence 4678899999999999999999999999963 35 7999999999986543210 012334333
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.+++.++.+++++.+|++.|.+++...+||+|+ |+++|+||+.||+.
T Consensus 63 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 63 -------VSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred -------hcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 2357889999999999999999999999999997 99999999999863
No 47
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=1.3e-11 Score=104.55 Aligned_cols=119 Identities=22% Similarity=0.403 Sum_probs=92.1
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCC----cccccccccccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSS----LPILKLPICAIP 348 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~----~~~~~~~v~~l~ 348 (435)
+++++.++.++.+|+++|.+.+.+.+||++. ++| +++|+++..++++++.......... ......++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~--~~~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 73 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDE--GTG---KLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVR--- 73 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeC--CCC---EEEEEEEHHHHHHHhhccchhccccccccchhhhcCHH---
Confidence 4678899999999999999999999999963 225 7999999999998775432110000 000112222
Q ss_pred CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.+.++++++++++++.++++.|.+.+.+.+||+|++|+++|+||+.||++
T Consensus 74 ---------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 74 ---------SIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred ---------HHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 233457889999999999999999999999999998899999999999975
No 48
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=1.4e-11 Score=102.78 Aligned_cols=109 Identities=19% Similarity=0.341 Sum_probs=87.1
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++++++.+.++.+|++.|.+++...+||+|. .++++|++|..|+..+... +....++ .+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~-----------~~~~~~v---~~------ 60 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDE-ENKVLGQVTLSDLLEIGPN-----------DYETLKV---CE------ 60 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHhhccc-----------cccccCh---hh------
Confidence 4678999999999999999999999999996 4799999999998753110 0000011 11
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
.|..++.++.+++++.+|+++|.+++.+.+||++. ++ +++|++|.+|+++
T Consensus 61 --------~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~---~~---~~~Giit~~di~~ 110 (111)
T cd04603 61 --------VYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK---EG---KLVGTIYERELLR 110 (111)
T ss_pred --------eeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC---CC---eEEEEEEhHHhhc
Confidence 25567789999999999999999999999999963 35 7999999999975
No 49
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=1.6e-11 Score=102.11 Aligned_cols=112 Identities=21% Similarity=0.342 Sum_probs=90.0
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
++.++.+++++.+|++.|.+++.+.+||+++ ++ +++|+++..++++.+....... ....++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~-----~~~~~v~~~----- 65 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD---NG---NLVGFLSEQDCLKQLLESSYHC-----DGVATVRDI----- 65 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECC---CC---eEEEEeehHHHHHHhhhhhhcc-----CCCccHHHH-----
Confidence 4678999999999999999999999999963 45 7999999999998765432110 011233332
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.+++.++.+++++.+|++.|.+++.+.+||+|+ |+++|+||..||++
T Consensus 66 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 66 -------MTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred -------hccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 2346788999999999999999999999999997 99999999999975
No 50
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.33 E-value=1.8e-11 Score=101.48 Aligned_cols=109 Identities=21% Similarity=0.400 Sum_probs=88.9
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
++.++.++.++.+|.+.|.+++.+++||+++ + +++|+++..++++.+.... . ....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~----~---~~~G~v~~~~l~~~~~~~~--~-----~~~~~i~~~----- 62 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD----G---RLVGIVTDRDLRNRVVAEG--L-----DPDTPVSEV----- 62 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC----C---EEEEEEEhHHHHHHHhccC--C-----CccCCHHHH-----
Confidence 5678999999999999999999999999962 4 7999999999987654320 0 011233333
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.++++++.+++++.+|+++|.+++.+.+||+++ |+++|+++++||++
T Consensus 63 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 63 -------MTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred -------hCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 2357889999999999999999999999999997 89999999999985
No 51
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=2.3e-11 Score=101.15 Aligned_cols=110 Identities=15% Similarity=0.256 Sum_probs=89.1
Q ss_pred ceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccc
Q 013832 274 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 353 (435)
Q Consensus 274 ~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~ 353 (435)
+..+.+++++.+|++.|.+.+.+.+||++. ++ +++|+++..++++.+.... . +...++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~dl~~~~~~~~-~------~~~~~i~~~------ 63 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDD---KK---RLVGIITRYDVLSYALESE-E------LKDAKVREV------ 63 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcC---CC---CEEEEEEHHHHHHhhhhhh-h------hcCCcHHHh------
Confidence 567899999999999999999999999963 34 7999999999987544321 0 011233333
Q ss_pred cccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 354 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 354 ~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.+++.++.+++++.++++.|.+++...+||+|++|+++|++++.||++
T Consensus 64 ------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 64 ------MNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred ------ccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 2347888999999999999999999999999999899999999999863
No 52
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.33 E-value=3.2e-11 Score=99.33 Aligned_cols=106 Identities=22% Similarity=0.362 Sum_probs=88.2
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
++..+.++.++.+|+..|.+++...+||+++ ++ +++|+++..|+++..... .++.++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~------------~~v~~~----- 59 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK---DN---KLLGIVSLESLEQAYKEA------------KSLEDI----- 59 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcC---CC---cEEEEEEHHHHHHHhhcC------------CcHhHh-----
Confidence 5677899999999999999999999999963 35 799999999998654211 223222
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.+.+.++++++++.+|++.|.+++.+.+||+|++|+++|++|++|+++
T Consensus 60 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 60 -------MLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred -------hcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 2246778999999999999999999999999999899999999999874
No 53
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=1.3e-11 Score=106.56 Aligned_cols=118 Identities=19% Similarity=0.358 Sum_probs=90.9
Q ss_pred CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCC-C------c-------
Q 013832 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS-S------L------- 337 (435)
Q Consensus 272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~-~------~------- 337 (435)
+++.++.+++++.+|++.|.+.+.+++||+++ .+ +++|+++..++++.+...+..... . .
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~---~~---~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDD---DG---RLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAF 75 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECC---CC---CEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHH
Confidence 56788999999999999999999999999963 35 799999999998765432110000 0 0
Q ss_pred -cccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 338 -PILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 338 -~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
.....++ .+.+.+++.++.+++++.+|+++|.+++.+.+||+| +|+++|+|++.|+++
T Consensus 76 ~~~~~~~v------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 76 VRSHGRKV------------ADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred HHhcCCCH------------HHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 0001112 223345788999999999999999999999999999 899999999999874
No 54
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=3.2e-11 Score=101.61 Aligned_cols=114 Identities=16% Similarity=0.260 Sum_probs=88.9
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++++++++.++.+|++.|.++++..+||.|.+ ++++|++|..|++........ ....+++ +.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~---------~~~~~~~---~~----- 63 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGAD---------LQKVPVG---VI----- 63 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCC---------ccCCCHH---HH-----
Confidence 56789999999999999999999999999964 789999999998876532110 1111121 11
Q ss_pred ccccCCCccCC--CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~--~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
|. .++.++.+++++.+|+++|.+++++.+||++++...+ +++|+||.++|++
T Consensus 64 ---------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~---~l~Gvit~~~l~~ 117 (118)
T cd04617 64 ---------MTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGL---EVIGRITKTNITK 117 (118)
T ss_pred ---------hCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccc---eEEEEEEhhheec
Confidence 33 3678999999999999999999999999997421125 7999999999864
No 55
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=2.2e-11 Score=102.57 Aligned_cols=119 Identities=24% Similarity=0.501 Sum_probs=90.3
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
+++++.+++++.+|++.|.+.+.+++||++ + | +++|++|..++++++......... .....+..+..++
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~---~-~---~~~G~v~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~-- 70 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIE---G-G---KLVGIVTEKDIADALRSFRPLVRD--RHQERRIRNLPVS-- 70 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEE---C-C---EEEEEEchHHHHHhhhhhhhcccc--hhhhhhhhccCHH--
Confidence 567899999999999999999999999996 2 5 899999999998876532211000 0000111111111
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.+.++..++.+++++.+|+++|.+.+.+.+||+|+ |+++|+||++||++
T Consensus 71 -----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 71 -----DIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred -----HHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 223457889999999999999999999999999997 99999999999874
No 56
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.32 E-value=2.5e-11 Score=100.85 Aligned_cols=111 Identities=22% Similarity=0.413 Sum_probs=90.8
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
++.++.+++++.++++.|.+.+.+.+||+++ ++ +++|+++..++++.+...... ...++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~i~~~~~~~~~~-------~~~~v~~~----- 64 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE---DG---RLVGIFTDGDLRRALEKGLDI-------LTLPVADV----- 64 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcC---CC---CEEEEechHHHHHHHhccCcc-------ccCCHHHh-----
Confidence 4667899999999999999888999999963 35 799999999999877643211 01233333
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.++..++.+++++.+|+++|.+++...+||+|++|+++|+|++.||++
T Consensus 65 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 65 -------MTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred -------hccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 3346788999999999999999999999999998899999999999975
No 57
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=2.6e-11 Score=100.26 Aligned_cols=105 Identities=18% Similarity=0.314 Sum_probs=88.0
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
++.++.+++++.+|+..|.+.+.+.+||++. +| +++|+++..+++... . ..++.+++
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-------~------~~~v~~~~---- 59 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE---KN---KVVGIVTSKDVAGKD-------P------DTTIEKVM---- 59 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECC---CC---eEEEEecHHHHhccc-------c------cccHHHHh----
Confidence 5778999999999999999999999999963 45 799999999996421 0 12333332
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
..+..++.+++++.+|+++|.+++.+.+||+|++|+++|++++.|+++
T Consensus 60 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 60 --------TKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred --------cCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 246788999999999999999999999999999999999999999874
No 58
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.31 E-value=5.3e-11 Score=99.61 Aligned_cols=112 Identities=23% Similarity=0.427 Sum_probs=89.2
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
+|.++++++|+.+|++.|.+.+...+||+|++ ++++|++|..|+...+....... ....+ .+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~--------~~~~v---~~~----- 64 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPG--------CTAPV---ENV----- 64 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCc--------ccCCH---HHH-----
Confidence 47789999999999999999999999999964 79999999999987553211000 00011 111
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
|..+++++.+++++.+|++.|.+++...+||++. ++ +++|++|.+|+++
T Consensus 65 ---------~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~---~~~Gvi~~~dl~~ 113 (114)
T cd04619 65 ---------MTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE---NA---RPLGVLNARDALK 113 (114)
T ss_pred ---------hcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC---CC---cEEEEEEhHhhcc
Confidence 4567889999999999999999999999999963 35 7999999999864
No 59
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.31 E-value=3.9e-11 Score=99.66 Aligned_cols=111 Identities=15% Similarity=0.196 Sum_probs=89.1
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
+++++.+++++.+|++.|.+++.+.+||++ . + +++|+++..++++.+..... .....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~dl~~~~~~~~~------~~~~~~v~~i----- 63 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD---G-N---KLVGIFTSKDIALRVVAQGL------DPESTLVERV----- 63 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE---C-C---EEEEEEEhHHHHHHHHhcCC------CcCcCCHHHh-----
Confidence 467789999999999999999999999996 2 5 79999999999865443210 0001233333
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.++..++.+++++.+|+++|.+++..++||+|++|+++|+||..||+.
T Consensus 64 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 64 -------MTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred -------cCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 2346788999999999999999999999999998899999999999874
No 60
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=2.2e-11 Score=102.85 Aligned_cols=117 Identities=20% Similarity=0.346 Sum_probs=91.5
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCC---ccccccccccccC
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSS---LPILKLPICAIPV 349 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~---~~~~~~~v~~l~i 349 (435)
+++++.+++++.+|++.|.+.+++++||++ + | +++|+++..++++.+.......... ......++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----- 69 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVE---D-N---ELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRA----- 69 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEe---C-C---eEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHH-----
Confidence 467899999999999999999999999996 2 5 7999999999998776432110000 00001122
Q ss_pred cccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 350 gt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
++.+.++++++.+++++.+|++.|.+++.+.+||+|++|+++|++++.|+++
T Consensus 70 -------~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 70 -------HQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred -------HHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 2233457889999999999999999999999999998899999999999975
No 61
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=2.8e-11 Score=104.07 Aligned_cols=125 Identities=18% Similarity=0.350 Sum_probs=90.9
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCC---Ccccc--ccccccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS---SLPIL--KLPICAI 347 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~---~~~~~--~~~v~~l 347 (435)
+++++.+++++.+|++.|.+.+++++||+++ ++ +++|+++..++++++......... ..-.+ ......+
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~---~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN---EG---RVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKL 75 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECC---CC---CEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHH
Confidence 4678999999999999999999999999963 35 799999999999877543211000 00000 0000000
Q ss_pred cCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 348 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 348 ~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
.. ..+++.+.+++..+.+++++.+|+++|.+++.+.+||+|+ |+++|+++++|+++
T Consensus 76 ~~----~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 76 LG----KKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred cC----CCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 00 0122334467889999999999999999999999999998 99999999999875
No 62
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.30 E-value=6.1e-11 Score=116.41 Aligned_cols=164 Identities=12% Similarity=0.205 Sum_probs=120.1
Q ss_pred hccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhh
Q 013832 167 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET 246 (435)
Q Consensus 167 l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~ 246 (435)
|...++.++|..-.++++++.+.|+.++...+.+++...+||++.+.++++|+++..|++..+.. .....
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~---~~~~~------- 133 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS---DAEAF------- 133 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhc---cCCcC-------
Confidence 56789999998767899999999999999999999999999998755789999999999864421 10000
Q ss_pred ccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832 247 HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV 326 (435)
Q Consensus 247 ~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l 326 (435)
.+ ++. | ++++++.+++++.++++.|.+++.+.+||+| +.| .++|+||..||++.+
T Consensus 134 -~l---~~l--------------~-r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD---e~G---~viGiVTleDIle~i 188 (292)
T PRK15094 134 -SM---DKV--------------L-RQAVVVPESKRVDRMLKEFRSQRYHMAIVID---EFG---GVSGLVTIEDILELI 188 (292)
T ss_pred -CH---HHH--------------c-CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEe---CCC---CEEEEeEHHHHHHHH
Confidence 11 111 3 3455899999999999999999999999996 345 699999999999998
Q ss_pred HhhhcccCCCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHH
Q 013832 327 CRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLL 380 (435)
Q Consensus 327 ~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m 380 (435)
........... -...+..+.-| -..+....+|.+..+.+
T Consensus 189 vGei~de~d~~--~~~~i~~~~~~-------------~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 189 VGEIEDEYDEE--DDIDFRQLSRH-------------TWTVRALASIEDFNEAF 227 (292)
T ss_pred hCCCccccccc--cccccEEeCCC-------------eEEEEeccCHHHHHHHh
Confidence 86543211100 00112222222 34577777888777776
No 63
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.30 E-value=4.5e-11 Score=98.79 Aligned_cols=109 Identities=20% Similarity=0.400 Sum_probs=89.8
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
++.++.+++++.+|++.|.+.+.+.+||++. + +++|+++.++++++...... ...++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~~l~~~~~~~~~--------~~~~v~~~----- 61 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD----G---RPLGIVTERDILRLLASGPD--------LQTPVGEV----- 61 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEeHHHHHHHHhcCCC--------CCcCHHHh-----
Confidence 4567899999999999999999999999962 5 79999999999887653210 12233332
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.++++++.+++++.++++.|.+.+.+.+||+|++|+++|+|+++||++
T Consensus 62 -------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 62 -------MSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred -------cCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 2357888999999999999999999999999998899999999999874
No 64
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.30 E-value=5.5e-11 Score=122.07 Aligned_cols=161 Identities=17% Similarity=0.216 Sum_probs=122.0
Q ss_pred hccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhh
Q 013832 167 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET 246 (435)
Q Consensus 167 l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~ 246 (435)
|++.++.|+|.+-.++++++.++|+.++.+.+.+++.+++||++++.++++|+++..|++..+. . ..
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~---~--~~-------- 254 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN---K--KN-------- 254 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc---c--CC--------
Confidence 3578999999888899999999999999999999999999999976679999999999975321 1 00
Q ss_pred ccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832 247 HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV 326 (435)
Q Consensus 247 ~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l 326 (435)
..+ ++. + +++.++++++++.++++.|.+++.|.++|+| +.| .++||||..||++.+
T Consensus 255 ~~l---~~~--------------~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD---E~G---~~~GiVT~eDileei 310 (408)
T TIGR03520 255 FDW---QSL--------------L-REPYFVPENKKLDDLLRDFQEKKNHLAIVVD---EYG---GTSGLVTLEDIIEEI 310 (408)
T ss_pred CCH---HHH--------------c-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEc---CCC---CEEEEEEHHHHHHHH
Confidence 111 111 3 4678999999999999999999999999996 345 699999999999998
Q ss_pred HhhhcccCCCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHH
Q 013832 327 CRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLL 380 (435)
Q Consensus 327 ~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m 380 (435)
......... .-...+..+.- .-..+....++.++.+.|
T Consensus 311 vgei~de~d---~~~~~i~~~~~-------------~~~~v~G~~~l~~l~~~l 348 (408)
T TIGR03520 311 VGDISDEFD---DEDLIYSKIDD-------------NNYVFEGKTSLKDFYKIL 348 (408)
T ss_pred hCCCCCcCC---cCccceEEeCC-------------CeEEEEeccCHHHHHHHh
Confidence 754322110 00111222221 334577888899888887
No 65
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.29 E-value=4e-11 Score=104.07 Aligned_cols=128 Identities=16% Similarity=0.244 Sum_probs=91.0
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcc-cCCCcccc-c---cccccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRH-CSSSLPIL-K---LPICAI 347 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~-~~~~~~~~-~---~~v~~l 347 (435)
+++++.+++++.+|++.|.+++.+.+||+|+ .+ +++|+++..++++++...... .+.. .++ . .+-...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 74 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD---NG---KPVGVITYRDLAFAEFEDNERGLPKK-SIKMKRKAGQKRYR 74 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECC---CC---CEEEEEeHHHHHHHhhcccccccchh-hhhhhhhccccccc
Confidence 3567899999999999999999999999963 45 799999999999876432110 0000 000 0 000000
Q ss_pred cCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 348 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 348 ~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
........+.+.+.+++.++.+++++.+|++.|.+++.+.+||+++ |+++|+||++||++
T Consensus 75 ~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 75 YVKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred ccccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 0000001133445567889999999999999999999999999986 99999999999875
No 66
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.29 E-value=3.9e-11 Score=99.57 Aligned_cols=111 Identities=26% Similarity=0.387 Sum_probs=90.2
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
++.++.+++++.+|++.|.+.++..+||++. .+ +++|+++..++++++..... ....++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~-------~~~~~v~~~----- 63 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD---DG---RLVGIVSLDDIREILFDPSL-------YDLVVASDI----- 63 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECC---CC---CEEEEEEHHHHHHHHhcccc-------cccEEHHHh-----
Confidence 5678999999999999999999999999963 35 79999999999876542210 001233332
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~-~g~lvGiis~~DI~~ 408 (435)
+.+++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+++..||+.
T Consensus 64 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 64 -------MTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred -------ccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 3457889999999999999999999999999997 799999999999874
No 67
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.29 E-value=5.6e-11 Score=98.22 Aligned_cols=109 Identities=20% Similarity=0.330 Sum_probs=89.2
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
+++++.+++++.+|++.|.+.+.+++||++ + + +++|+++..|+++........ ..++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~dl~~~~~~~~~~--------~~~~~~------ 60 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVD---D-G---RLVGIVTLADIRRVPAEGREA--------TVLVGD------ 60 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEee---C-C---eEEEEEEHHHHHHHHhcCccc--------ccCHHH------
Confidence 567899999999999999999999999996 2 4 799999999998755421100 011222
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
.+.+++.++.+++++.+++++|.+++.+.+||+|++|+++|+||..||++
T Consensus 61 ------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 61 ------VMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred ------hccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 23357889999999999999999999999999998899999999999975
No 68
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=5.5e-11 Score=100.80 Aligned_cols=119 Identities=14% Similarity=0.166 Sum_probs=88.9
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++.+++.+.++.+|.+.|.++++.++||+|.+.++++|+++..|++..+........ . . +.. .+.....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~-~--~--~~~----~~~~~~~-- 70 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFP-G--L--DPL----YPIPLRD-- 70 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhcc-c--h--hhh----hhhhhhh--
Confidence 456889999999999999999999999999643789999999999876543211100 0 0 000 0000000
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGI 322 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dI 322 (435)
...|..++.++.+++++.+|++.|.+++++.+||+++ .+ +++|+||.+||
T Consensus 71 ------~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~---~~vGiit~~di 120 (123)
T cd04627 71 ------LTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDN---QG---NLIGNISVTDV 120 (123)
T ss_pred ------cccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC---CC---cEEEEEeHHHh
Confidence 0125678899999999999999999999999999963 35 79999999998
No 69
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=5.9e-11 Score=98.49 Aligned_cols=110 Identities=15% Similarity=0.352 Sum_probs=87.5
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
.+.++.+++++.+|++.|.+++.+.++|.+ +| +++|+++..++++++...... +...++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~~~----- 63 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME----RG---ELVGLLTFREVLQAMAQHGAG------VLDTTVRAI----- 63 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee----CC---EEEEEEEHHHHHHHHHhcCCc------hhcCCHHHH-----
Confidence 356789999999999999888888888774 25 799999999999876532111 111233333
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.+++.++.+++++.+|+++|.+++...+||+| +|+++|++|++||++
T Consensus 64 -------~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 64 -------MNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred -------hCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 234678899999999999999999999999998 589999999999975
No 70
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.29 E-value=5.2e-11 Score=98.90 Aligned_cols=110 Identities=21% Similarity=0.364 Sum_probs=88.1
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH-HHHhhhcccCCCccccccccccccCcc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK-CVCRYFRHCSSSLPILKLPICAIPVGT 351 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~-~l~~~~~~~~~~~~~~~~~v~~l~igt 351 (435)
+++++.+++++.+|.+.|.+++.+.+||++ + | +++|+++..+++. .+.... .....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~i~~~~l~~~~~~~~~-------~~~~~~~~~~---- 63 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCE---N-D---RLVGIVTDRDIVVRAVAEGR-------DPDTTTVGDV---- 63 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEEhHHHHHHHhhccC-------CcccCCHHHh----
Confidence 467899999999999999999999999996 2 5 7999999999873 332211 0011123333
Q ss_pred cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.+.+.++.+++++.++++.|.+.+.+++||+|++|+++|++++.|+++
T Consensus 64 --------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 64 --------MTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred --------ccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 2346778999999999999999999999999998899999999999875
No 71
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=5.3e-11 Score=101.56 Aligned_cols=115 Identities=13% Similarity=0.164 Sum_probs=85.2
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh--hhcccCCCccccccccccccCc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR--YFRHCSSSLPILKLPICAIPVG 350 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~--~~~~~~~~~~~~~~~v~~l~ig 350 (435)
+++++.+++++.+|++.|.+++.+.+||+++ .| +++|+++..|+.+.... ..... ......++.+++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~---~~~~~~~v~~im-- 70 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS---DD---NFIGVITAVDLLGEEPIKRIQEGG---ISRSELTVADVM-- 70 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEHHHHhhChhhHHHHHcC---CCchheEHHHhc--
Confidence 3578899999999999999999999999963 35 79999999999863210 00000 011123344443
Q ss_pred ccccccCCCCCCCc--eEe----cCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHH
Q 013832 351 TWVPKIGEPNRRPL--AML----RPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITA 408 (435)
Q Consensus 351 t~~~~~g~~~~~~v--~tv----~~d~~L~~a~~~m~~~~i~~lPVVD~~-g~lvGiis~~DI~~ 408 (435)
.++. +.+ .+++++.+|+++|.+++.+.+||||++ |+++|+||++||++
T Consensus 71 ----------~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 71 ----------TPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred ----------CchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 2222 233 378999999999999999999999987 79999999999875
No 72
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.28 E-value=1.1e-10 Score=96.94 Aligned_cols=110 Identities=21% Similarity=0.396 Sum_probs=88.4
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
+++++.+++++.+|++.|.+.+.+.+||+++ + +++|+++..++++.+...... ....++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~~------~~~~~~~~~----- 63 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN----E---KPVGIITERDLVKKVVSRNLK------PREVPVGEV----- 63 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC----C---EEEEEEEHHHHHHHHhhccCC------cccCCHHHh-----
Confidence 5678899999999999999999999999962 3 699999999999866432100 011233333
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.+++.++.+++++.+++++|.+++.+.+||||++ +++|+|+++||+.
T Consensus 64 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 64 -------MSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred -------cCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 23478889999999999999999999999999865 9999999999874
No 73
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=8.1e-11 Score=100.41 Aligned_cols=118 Identities=18% Similarity=0.371 Sum_probs=89.6
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhc-ccCCC-----cccccccccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFR-HCSSS-----LPILKLPICA 346 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~-~~~~~-----~~~~~~~v~~ 346 (435)
+++++.+++++.+|+++|.+.+++.+||++. ++ +++|++|..++++++..... ..... ......++.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 74 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDD---NG---KLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVY- 74 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECC---CC---cEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHH-
Confidence 4678899999999999999999999999963 35 79999999999876543210 00000 000112222
Q ss_pred ccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEc--CCCcEEEEEeHHHHHH
Q 013832 347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVD--DNDSLLDIYCRSDITA 408 (435)
Q Consensus 347 l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD--~~g~lvGiis~~DI~~ 408 (435)
+.+.++++++.+++++.+|+++|.+.+...+||++ ++|+++|+||++||++
T Consensus 75 -----------~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 75 -----------DAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred -----------HHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 23346888999999999999999999999999994 4689999999999874
No 74
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.27 E-value=6.7e-11 Score=98.89 Aligned_cols=109 Identities=20% Similarity=0.323 Sum_probs=85.1
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
+++++.+++++.+|++.|.+++...+||++....+| +++|+++..+++.... . ..++.+++
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~---~~~G~v~~~dl~~~~~------~------~~~v~~~~---- 63 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG---KLLGIVTSRDIDFLTD------S------ETPLSEVM---- 63 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC---EEEEEEEhHHhhhhhc------c------CCCHHHhc----
Confidence 456788999999999999999999999997311145 7999999999863210 0 12233332
Q ss_pred ccccCCCCCCCceEecC--CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRP--SASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~--d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
.++..++.. ++++.+|+++|.+++.+.+||||++|+++|+||++||+.
T Consensus 64 --------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 64 --------TPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred --------CCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 234555655 999999999999999999999999899999999999874
No 75
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.27 E-value=7.4e-11 Score=97.83 Aligned_cols=109 Identities=17% Similarity=0.256 Sum_probs=88.2
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
.++++.++.++.+|++.|.+++...+||++ + + +++|+++..++++.+..... ....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~~~~~-------~~~~~i~~~----- 62 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRD---G-D---PRLGIVTRTDLLDAVLLDGL-------PSSTPVGEI----- 62 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEec---C-C---eEEEEEEHHHHHHHHHcCCC-------CCCCCHHHH-----
Confidence 456789999999999999999999999996 2 4 69999999999876542100 012333333
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.+++..+++++++.+++++|.+++...+||+|+ |+++|+|++.|+++
T Consensus 63 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 63 -------ATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred -------hCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 2357889999999999999999999999999985 89999999999875
No 76
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.27 E-value=8.7e-11 Score=122.09 Aligned_cols=168 Identities=18% Similarity=0.281 Sum_probs=120.0
Q ss_pred CCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCC---CCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEe
Q 013832 201 QGISMAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYA 277 (435)
Q Consensus 201 ~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~---~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v 277 (435)
+=-..+|++.+. ..-+|..++..++......+ .+++.++-.. .++..+.. ...|.++++++
T Consensus 30 ~~~l~~p~~s~~----mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~~----~V~~Vk~~--------~~~~~~~~vtl 93 (450)
T TIGR01302 30 NIKLNIPILSSP----MDTVTESRMAIAMAREGGIGVIHRNMSIEEQAE----QVKRVKRA--------ENGIISDPVTI 93 (450)
T ss_pred ccCcCCCeeecC----CCccCHHHHHHHHHhcCCCceeecCCCHHHHHH----HHhhhccc--------cCceecCceEe
Confidence 334557888642 45579999888777655432 2232222111 11222111 11256788999
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccC
Q 013832 278 GPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIG 357 (435)
Q Consensus 278 ~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g 357 (435)
.+++++.+|++.|.+++++++||++++...+ +++|++|.+|++... . ...++.+++
T Consensus 94 ~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~---~lvGIVt~rDL~~~~-----~-------~~~~V~dvm--------- 149 (450)
T TIGR01302 94 SPETTVADVLELMERKGISGIPVVEDGDMTG---KLVGIITKRDIRFVK-----D-------KGKPVSEVM--------- 149 (450)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeCCCCCC---eEEEEEEHHHHhhhh-----c-------CCCCHHHhh---------
Confidence 9999999999999999999999997421114 799999999996321 0 123444442
Q ss_pred CCCC-CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 013832 358 EPNR-RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 411 (435)
Q Consensus 358 ~~~~-~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~ 411 (435)
. ++++++++++++.+|+++|.+++++.+||||++|+++|+||+.||++...
T Consensus 150 ---~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 150 ---TREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred ---CCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 3 37899999999999999999999999999999999999999999998754
No 77
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=1.9e-10 Score=96.08 Aligned_cols=112 Identities=21% Similarity=0.375 Sum_probs=88.9
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++.++.++.++.+|.+.|.++++..+||.|.+.++++|++|..|+...+....... ...++ .+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~--------~~~~v---~~------ 64 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDP--------DRVNV---YE------ 64 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCC--------CccCH---HH------
Confidence 46789999999999999999999999999963379999999999987554311110 00111 11
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
+|..+++++.+++++.+|++.|.+++.+.+||++ + + +++|++|..||++
T Consensus 65 --------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd---~-~---~~~Gvi~~~dl~~ 113 (114)
T cd04630 65 --------IMTKPLISVSPDMDIKYCARLMERTNIRRAPVVE---N-N---ELIGIISLTDIFL 113 (114)
T ss_pred --------HhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee---C-C---EEEEEEEHHHhhc
Confidence 1456788999999999999999999999999995 2 5 7999999999974
No 78
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.26 E-value=5.4e-11 Score=124.70 Aligned_cols=167 Identities=17% Similarity=0.220 Sum_probs=118.7
Q ss_pred eeeeeeCCCCeEEEeeehHHHHHHHHHhccCC---CCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCC
Q 013832 205 MAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPND 281 (435)
Q Consensus 205 s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~---~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~ 281 (435)
..||+.. -.+.+|..++..++...+--+ .+.+.++.. ..++..+.. ..+ |.++++++.+++
T Consensus 54 ~~Pivsa----~M~~vt~~~lA~Ama~aGGiGfI~~~as~E~q~----~~Irkvk~~------~~g--mi~dpvtV~pd~ 117 (505)
T PLN02274 54 SIPCVSS----PMDTVTESDMAIAMAALGGIGIVHYNNTAEEQA----AIVRKAKSR------RVG--FVSDPVVKSPSS 117 (505)
T ss_pred CCCEecc----CCcccchHHHHHHHHhCCCeEEEcCCCCHHHHH----HHHHHhhcc------ccc--ccCCCeeeCCCC
Confidence 4788753 247788888887776554221 122222211 112222211 123 568889999999
Q ss_pred CHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCCC
Q 013832 282 NLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR 361 (435)
Q Consensus 282 sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~ 361 (435)
++.+|++.|.+++++.+||+++...++ +++|+||.+||... . ....+|.+++. ..
T Consensus 118 tV~dA~~lm~~~~~~~lpVvD~~~~~G---klvGIVT~~DL~~v-~-----------~~~~~V~eIMt--~~-------- 172 (505)
T PLN02274 118 TISSLDELKASRGFSSVCVTETGTMGS---KLLGYVTKRDWDFV-N-----------DRETKLSEVMT--SD-------- 172 (505)
T ss_pred cHHHHHHHHHhcCCceEEEEeCCCcCC---eEEEEEEHHHHhhc-c-----------ccCCcHHHHhc--cC--------
Confidence 999999999999999999997311135 89999999999532 1 11345555541 10
Q ss_pred CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832 362 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (435)
Q Consensus 362 ~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~ 412 (435)
.+++++.+++++.+|+++|.+++++.+||||++++++|+||++||++....
T Consensus 173 ~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 173 DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 138899999999999999999999999999999999999999999987654
No 79
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.26 E-value=5.3e-11 Score=98.11 Aligned_cols=108 Identities=19% Similarity=0.395 Sum_probs=86.0
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
+++++.+++++.+|+..|.+.+++.+||++ + + +++|++|..++++++...... ...++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~dl~~~~~~~~~~-------~~~~~~~~----- 62 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVD---D-G---RVVGSIDESDLLDALIEGKAK-------FSLPVREV----- 62 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEee---C-C---eeEEEEeHHHHHHHHhccccc-------cCcCHHHH-----
Confidence 467899999999999999999999999996 2 4 799999999999876533111 11223332
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.+++.++++++++.+|+++|.+ . ..+||||++|+++|+++++||++
T Consensus 63 -------~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 63 -------MGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred -------hcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 23467889999999999999988 3 45899998999999999999875
No 80
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.26 E-value=6.9e-11 Score=122.89 Aligned_cols=160 Identities=17% Similarity=0.181 Sum_probs=115.0
Q ss_pred eeeeeeCCCCeEEEeeehHHHHHHHHHhccCC---CCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCC
Q 013832 205 MAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPND 281 (435)
Q Consensus 205 s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~---~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~ 281 (435)
.+|++.+ ..--+|...+.-.+++.+--+ .+++ +..|.+....... ...|.++++++.+++
T Consensus 43 ~~P~vsa----~mdtvTe~~MAi~~A~~GGigvIh~n~~--------i~~qae~v~~VKv-----~eim~~~pvtv~p~~ 105 (475)
T TIGR01303 43 TIPLVVA----NMTAVAGRRMAETVARRGGIVILPQDLP--------IPAVKQTVAFVKS-----RDLVLDTPITLAPHD 105 (475)
T ss_pred ccceeec----cchhhHHHHHHHHHHHCCCEEEEeCCCC--------HHHHHHHHhhcch-----hhccccCCeEECCCC
Confidence 4687764 244566666665556554211 2332 3333332222111 113667889999999
Q ss_pred CHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCCC
Q 013832 282 NLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR 361 (435)
Q Consensus 282 sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~ 361 (435)
++.+|++.|.+++++.+||++ ++ +++|+||.+|+... . ...++.++ |.
T Consensus 106 tI~eA~~lm~~~~~~~~vVvD----~g---klvGIVT~rDL~~~--------~-----~~~~V~dI------------Mt 153 (475)
T TIGR01303 106 TVSDAMALIHKRAHGAAVVIL----ED---RPVGLVTDSDLLGV--------D-----RFTQVRDI------------MS 153 (475)
T ss_pred CHHHHHHHHHhcCCeEEEEEE----CC---EEEEEEEHHHhhcC--------C-----CCCCHHHH------------cc
Confidence 999999999999999999985 24 79999999998311 0 01334444 34
Q ss_pred CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 013832 362 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 413 (435)
Q Consensus 362 ~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~ 413 (435)
++++++++++++.+|+++|.+++++.+||||++|+++|+||++||++.....
T Consensus 154 ~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 154 TDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT 205 (475)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence 5899999999999999999999999999999999999999999999866554
No 81
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=5.4e-11 Score=100.28 Aligned_cols=118 Identities=19% Similarity=0.341 Sum_probs=89.7
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCc--cccccccccccCc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL--PILKLPICAIPVG 350 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~--~~~~~~v~~l~ig 350 (435)
+++++.+++++.+|++.|.+.+.+.+||++. .| +++|+++..++++............. .....++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----- 70 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK---AG---ELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVE----- 70 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEcHHHHhhccccccccchhhhhhhccCcHH-----
Confidence 4678999999999999999999999999963 45 79999999999875321100000000 00011222
Q ss_pred ccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 351 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 351 t~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.+.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|+.||++
T Consensus 71 -------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 71 -------KIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred -------HHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 223457889999999999999999999999999998899999999999875
No 82
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.25 E-value=1.1e-10 Score=101.15 Aligned_cols=122 Identities=20% Similarity=0.366 Sum_probs=96.8
Q ss_pred cCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhcc
Q 013832 169 THTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHT 248 (435)
Q Consensus 169 ~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~ 248 (435)
..+|..+| +++|+++.+++++.+|+++|.++|++-+||+++ +++||-+|..|+++.+.+-. +++..++
T Consensus 64 ~ita~~iM--~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~--~k~VGsItE~~iv~~~le~~--------e~i~~~~ 131 (187)
T COG3620 64 RITAKTIM--HSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE--DKVVGSITENDIVRALLEGM--------ESIRSLR 131 (187)
T ss_pred eEeHhhhc--cCCeeEECchhhHHHHHHHHHHcCCccCceeeC--CeeeeeecHHHHHHHHhccc--------cchhhhh
Confidence 46788888 669999999999999999999999999999985 79999999999998765432 2233332
Q ss_pred HHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh
Q 013832 249 ISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR 328 (435)
Q Consensus 249 i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~ 328 (435)
.+++ |..+|.++++++++..+..++- ...++.|+. +| +++||||..||++++..
T Consensus 132 ---vr~v--------------M~e~fP~Vs~~~~l~vI~~LL~--~~~AVlV~e----~G---~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 132 ---VREV--------------MGEPFPTVSPDESLNVISQLLE--EHPAVLVVE----NG---KVVGIITKADIMKLLAG 185 (187)
T ss_pred ---HHHH--------------hcCCCCcCCCCCCHHHHHHHHh--hCCeEEEEe----CC---ceEEEEeHHHHHHHHhc
Confidence 2333 6789999999999987666554 345677773 56 89999999999998753
No 83
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.25 E-value=1.7e-10 Score=121.20 Aligned_cols=161 Identities=20% Similarity=0.344 Sum_probs=118.3
Q ss_pred eeeeeeCCCCeEEEeeehHHHHHHHHHhccCC---CCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCC
Q 013832 205 MAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPND 281 (435)
Q Consensus 205 s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~---~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~ 281 (435)
.+|++.+. .+.+|..++..++...+..+ .+++.++.... +..++.. +..|..+++++.+++
T Consensus 41 ~~Piv~a~----m~~vT~~ela~ava~~GglG~i~~~~~~e~~~~~-I~~vk~~-----------~dim~~~~v~i~~~~ 104 (486)
T PRK05567 41 NIPLLSAA----MDTVTEARMAIAMAREGGIGVIHKNMSIEEQAEE-VRKVKRS-----------ESGVVTDPVTVTPDT 104 (486)
T ss_pred CcCEEeCC----CCCcCHHHHHHHHHhCCCCCEecCCCCHHHHHHH-HHHhhhh-----------hhcccCCCeEeCCCC
Confidence 38998752 45678889888777655332 12332222111 1111111 113678999999999
Q ss_pred CHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCCC
Q 013832 282 NLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR 361 (435)
Q Consensus 282 sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~ 361 (435)
++.+|++.|.+++++++||+++ .+ +++|++|.+|+.... . ...++.+++ .
T Consensus 105 tv~ea~~~m~~~~~~~lpVvd~---~g---~lvGiVt~~DL~~~~-----~-------~~~~V~dim------------~ 154 (486)
T PRK05567 105 TLAEALALMARYGISGVPVVDE---NG---KLVGIITNRDVRFET-----D-------LSQPVSEVM------------T 154 (486)
T ss_pred CHHHHHHHHHHhCCCEEEEEcc---CC---EEEEEEEHHHhhhcc-----c-------CCCcHHHHc------------C
Confidence 9999999999999999999963 45 899999999995321 0 123344432 2
Q ss_pred -CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 013832 362 -RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 411 (435)
Q Consensus 362 -~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~ 411 (435)
++++++.+++++.+|+++|.+++++.+||+|++|+++|+||++||++...
T Consensus 155 ~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 155 KERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE 205 (486)
T ss_pred CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence 47899999999999999999999999999999999999999999998653
No 84
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.25 E-value=4.9e-11 Score=124.81 Aligned_cols=111 Identities=21% Similarity=0.274 Sum_probs=91.1
Q ss_pred eEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccccc
Q 013832 275 VYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVP 354 (435)
Q Consensus 275 v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~ 354 (435)
+++.|++++.+|++.|.+++++.+||+++..+++ +++||||..||... . .....++.+++. ..
T Consensus 108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g---kLvGIVT~~DLr~~-----~------~~~~~~V~dIMt--~~- 170 (502)
T PRK07107 108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG---KLLGIVTSRDYRIS-----R------MSLDTKVKDFMT--PF- 170 (502)
T ss_pred CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC---EEEEEEEcHHhhcc-----c------cCCCCCHHHHhC--CC-
Confidence 5899999999999999999999999997321245 89999999998521 0 012355665542 11
Q ss_pred ccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 013832 355 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 409 (435)
Q Consensus 355 ~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~ 409 (435)
.+++++.+++++.+|+++|.+++++.|||||++|+++|+||++||++.
T Consensus 171 -------~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 171 -------EKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred -------CCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence 278899999999999999999999999999999999999999999874
No 85
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.25 E-value=7.6e-11 Score=117.73 Aligned_cols=124 Identities=10% Similarity=0.193 Sum_probs=97.7
Q ss_pred ccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhc
Q 013832 168 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETH 247 (435)
Q Consensus 168 ~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~ 247 (435)
...++.|+|....+++++++++|+.+|++.|.++++..+||+|+ +|+++|++|..|+..++.... . +...
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~-~g~lvGivt~~Dl~~~~~~~~----~-----~~~~ 269 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD-NMKIEGIFTDGDLRRVFDMGI----D-----LRQA 269 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEecHHHHHHHhcCC----C-----cccC
Confidence 44567888865447889999999999999999999988888885 489999999999876443110 0 0001
Q ss_pred cHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832 248 TISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC 325 (435)
Q Consensus 248 ~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~ 325 (435)
++ .+ +|.++++++.+++++.+|+++|.+++++++||++ ++ +++|+||.+||++.
T Consensus 270 ~v---~~--------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~----~~---~lvGiit~~dil~~ 323 (326)
T PRK10892 270 SI---AD--------------VMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD----GD---HLLGVLHMHDLLRA 323 (326)
T ss_pred CH---HH--------------hcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee----CC---EEEEEEEhHHhHhc
Confidence 11 11 2778899999999999999999999999999995 34 79999999999864
No 86
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.24 E-value=1.2e-10 Score=94.88 Aligned_cols=94 Identities=21% Similarity=0.381 Sum_probs=81.6
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
.++++.+++++.+|++.|.++++..+||.|+ .++++|++|..|+...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~-------------------------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-DGKLSGIITERDLIAK-------------------------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHhcC--------------------------------
Confidence 4678899999999999999999999999996 4799999999997530
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
..+.++.+++++.+|+++|.+++++.+||+++ .+ +++|++|.+||++
T Consensus 49 -----------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~---~~---~~~Giit~~di~~ 95 (96)
T cd04614 49 -----------SEVVTATKRTTVSECAQKMKRNRIEQIPIING---ND---KLIGLLRDHDLLK 95 (96)
T ss_pred -----------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECC---CC---cEEEEEEHHHhhc
Confidence 11568899999999999999999999999962 35 7999999999974
No 87
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.23 E-value=1.2e-10 Score=121.90 Aligned_cols=164 Identities=21% Similarity=0.282 Sum_probs=116.4
Q ss_pred ceeeeeeCCCCeEEEeeehHHHHHHHHHhccCC---CCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCC
Q 013832 204 SMAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPN 280 (435)
Q Consensus 204 ~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~---~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~ 280 (435)
...|++.. -..-+|...+...+.+.+-.+ .+++.|+... .++.++.. ..| +..+++++.++
T Consensus 49 l~~Pii~a----~M~~vt~~~ma~a~a~~GglGvi~~~~~~e~~~~----~v~kvk~~------e~g--~i~dpvtv~pd 112 (495)
T PTZ00314 49 LKIPIVSS----PMDTVTEHKMAIAMALMGGIGVIHNNCSIEEQVE----EVRKVKRF------ENG--FIMDPYVLSPN 112 (495)
T ss_pred cCCceeec----CccccccHHHHHHHHHCCCeEEecCCCCHHHHHH----HHhhcccc------ccc--cccCCeecCCC
Confidence 34788753 256677777776666554221 2333333221 12222211 112 55778899999
Q ss_pred CCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCC
Q 013832 281 DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPN 360 (435)
Q Consensus 281 ~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~ 360 (435)
+++.+|+++|.+++++.+||++++..++ +++||+|.+||.. .. . ...+|.+++
T Consensus 113 ~tv~eA~~lm~~~~~s~vpVvd~~~~~g---kLvGIVt~~DL~~-~~----~-------~~~~V~diM------------ 165 (495)
T PTZ00314 113 HTVADVLEIKEKKGFSSILITVDGKVGG---KLLGIVTSRDIDF-VK----D-------KSTPVSEVM------------ 165 (495)
T ss_pred CCHHHHHHHHHHcCCcEEEEEeCCccCC---eEEEEEEHHHHhh-cc----c-------CCCCHHHhh------------
Confidence 9999999999999999999997421135 8999999999852 11 0 124455543
Q ss_pred CC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 013832 361 RR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 410 (435)
Q Consensus 361 ~~--~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~ 410 (435)
.+ +++++++++++.+|+++|.++++..+||||++++++|+||++||++..
T Consensus 166 t~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 166 TPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred CCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 23 789999999999999999999999999999999999999999999753
No 88
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=3e-10 Score=94.06 Aligned_cols=111 Identities=21% Similarity=0.397 Sum_probs=88.8
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++++++.+.++.+|.+.|.+++...+||.|++ ++++|+++..|++..+....... ...++ .+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~--------~~~~~---~~------ 63 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASA--------LDTPV---SE------ 63 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCc--------cccCH---HH------
Confidence 56788999999999999999999999999964 79999999999987654221100 00011 11
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
.|..++.++.+++++.++++.|.+.+.+.+||++ + + +++|++|.+||++
T Consensus 64 --------~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~---~-~---~~~Gvit~~di~~ 112 (113)
T cd04623 64 --------IMTRNVITVTPDDTVDEAMALMTERRFRHLPVVD---G-G---KLVGIVSIGDVVK 112 (113)
T ss_pred --------hcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEe---C-C---EEEEEEEHHHhhc
Confidence 1556788999999999999999999999999996 2 5 7999999999975
No 89
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.22 E-value=1.2e-10 Score=114.42 Aligned_cols=123 Identities=11% Similarity=0.147 Sum_probs=98.7
Q ss_pred cCCC--CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccc
Q 013832 269 AFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 346 (435)
Q Consensus 269 ~~~~--~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~ 346 (435)
+|++ .++++.++.++.++++.+.+.+.+++||+++ ..+ +++|+++.+|++..+..... ..++.+
T Consensus 72 iMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~--~~d---~iiGiv~~kDll~~~~~~~~---------~~~l~~ 137 (292)
T PRK15094 72 IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD---HIEGILMAKDLLPFMRSDAE---------AFSMDK 137 (292)
T ss_pred EccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecC--CCC---cEEEEEEHHHHHhHhhccCC---------cCCHHH
Confidence 4655 6899999999999999999999999999963 223 69999999999865431100 112222
Q ss_pred ccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccC
Q 013832 347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI 418 (435)
Q Consensus 347 l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~~~l 418 (435)
++ ++++++++++++.+|++.|.+++.+.+||||+.|.++|+||+.||+..+....+.+.
T Consensus 138 l~-------------r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~ 196 (292)
T PRK15094 138 VL-------------RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEY 196 (292)
T ss_pred Hc-------------CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCcccc
Confidence 21 355689999999999999999999999999999999999999999998877655543
No 90
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.21 E-value=2.1e-10 Score=96.98 Aligned_cols=122 Identities=21% Similarity=0.380 Sum_probs=90.3
Q ss_pred CCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhh
Q 013832 180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL 259 (435)
Q Consensus 180 ~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~ 259 (435)
.++++++.+.++.+|++.|.++++..+||+|.+ ++++|+++..|++..+...... .. ...+. +.. .+.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~--~~-~~~~~-~~~---~~~---- 69 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRR--PL-RGRLR-GRD---KPE---- 69 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccc--hh-hhhhh-ccc---ccc----
Confidence 467899999999999999999999999999864 8999999999987654311100 00 00000 000 000
Q ss_pred cccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
..+.+|.++++++.+++++.+|+++|.+++.+.+||+++ .| +++|++|.+|+++
T Consensus 70 -----~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~---~g---~~~Gvit~~di~~ 123 (124)
T cd04600 70 -----TVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDE---DR---RLVGIVTQTDLIA 123 (124)
T ss_pred -----cHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC---CC---CEEEEEEhHHhhc
Confidence 001135678899999999999999999999999999962 45 7999999999974
No 91
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.21 E-value=1.2e-10 Score=95.99 Aligned_cols=107 Identities=21% Similarity=0.374 Sum_probs=85.3
Q ss_pred CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (435)
Q Consensus 272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt 351 (435)
++++++.+++++.++++.|.+++...+||++. .| +++|+++.++++... . ...++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-----~-------~~~~v~~~~--- 60 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDD---DG---KLVGIVTNRDLRFET-----D-------LDKPVSEVM--- 60 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcC---CC---EEEEEEEhhHeeecc-----c-------CCCCHHHhc---
Confidence 45678999999999999999999999999963 35 799999999985321 0 112333332
Q ss_pred cccccCCCCCCCceEecC-CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 352 WVPKIGEPNRRPLAMLRP-SASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 352 ~~~~~g~~~~~~v~tv~~-d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
.++...+.+ ++++.+|+++|.+.+.+.+||+|++|+++|+|+++|+++
T Consensus 61 ---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 61 ---------TPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred ---------ccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 234455666 999999999999999999999998899999999999874
No 92
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.21 E-value=3.1e-10 Score=92.82 Aligned_cols=111 Identities=24% Similarity=0.451 Sum_probs=89.7
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
++.++.+++++.++++.|.+++.+.+||++. .+ +++|+++.+++++.+........ ..+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~-------~~~~~------ 62 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD---DG---RLVGIVTERDLLRALAEGGLDPL-------VTVGD------ 62 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECC---CC---CEEEEEeHHHHHHHHHhccCCcc-------ccHHH------
Confidence 4567899999999999999999999999963 34 79999999999987764321100 00111
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
.+..+..++.+++++.+|++.|.+.+.+.+||+|++|+++|++++.|++.
T Consensus 63 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 63 ------VMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred ------HhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 12347788999999999999999999999999999999999999999874
No 93
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.21 E-value=1.9e-10 Score=94.64 Aligned_cols=100 Identities=15% Similarity=0.282 Sum_probs=83.3
Q ss_pred eEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccccc
Q 013832 275 VYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVP 354 (435)
Q Consensus 275 v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~ 354 (435)
+++.++.++.+|++.|.+.+.+.+||++ + + +++|+++..++++... .++.++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~--------------~~~~~~------- 55 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVD---Y-N---KFLGAVYLKDIENATY--------------GDVVDY------- 55 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEE---C-C---EEEEEEEHHHHhhhcc--------------cchhhh-------
Confidence 4688999999999999999999999996 2 5 7999999999975210 122222
Q ss_pred ccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 355 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 355 ~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.++..++.+++++.+|++.|.+++.+.+||+| +|+++|++|++||+.
T Consensus 56 -----~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 56 -----IVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred -----hhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 223577899999999999999999999999998 589999999999874
No 94
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.21 E-value=2.2e-10 Score=93.76 Aligned_cols=102 Identities=20% Similarity=0.382 Sum_probs=84.9
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
+++++.+++++.++++.|.+++.+.+||++ ++ +++|+++..++++... ..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d----~~---~~~Giv~~~~l~~~~~-------------~~~~~~~----- 56 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE----DG---KLVGIITSRDVRRAHP-------------NRLVADA----- 56 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE----CC---EEEEEEehHHhhcccc-------------cCCHHHH-----
Confidence 467789999999999999999999999995 24 7999999999975210 1223332
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT 407 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~ 407 (435)
+.+++.++++++++.+|+++|.+++.+.+||+|+ |+++|+||+.||+
T Consensus 57 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 57 -------MTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred -------ccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 2347889999999999999999999999999997 9999999999987
No 95
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=2.7e-10 Score=96.03 Aligned_cols=120 Identities=19% Similarity=0.334 Sum_probs=89.4
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++++++++.++.+|++.|.++++..+||+|.+ ++++|+++..|+...+.........-..+......+ .+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v---~~------ 71 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPV---AE------ 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCH---HH------
Confidence 56789999999999999999999999999864 799999999998875532211100000000001111 11
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
++..+++++.+++++.++++.|.+++.+.+||+++ .+ +++|++|..|+++
T Consensus 72 --------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~dl~~ 121 (122)
T cd04803 72 --------VMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD---KG---TLVGIITRSDFLR 121 (122)
T ss_pred --------hhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC---CC---CEEEEEEHHHhhc
Confidence 24567889999999999999999999999999963 35 7999999999975
No 96
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.20 E-value=3.1e-10 Score=94.50 Aligned_cols=110 Identities=15% Similarity=0.284 Sum_probs=87.3
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
+.++++.+.++.+|.+.|.++++..+||.|++ ++++|++|..|+...+...... . -.+ .+.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~---------~-~~v---~~~----- 63 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLSL---------D-DPV---SEV----- 63 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCCc---------C-CCH---HHh-----
Confidence 45788999999999999999999999999864 7999999999987644311100 0 011 121
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
|..++.++.+++++.+|++.|.+++.+.+||++. +| +++|+||.+||+.
T Consensus 64 ---------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~di~~ 112 (113)
T cd04607 64 ---------MNRNPITAKVGSSREEILALMRERSIRHLPILDE---EG---RVVGLATLDDLLS 112 (113)
T ss_pred ---------hcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECC---CC---CEEEEEEhHHhcc
Confidence 4466788999999999999999999999999962 35 7999999999863
No 97
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.20 E-value=2.5e-10 Score=93.80 Aligned_cols=105 Identities=22% Similarity=0.424 Sum_probs=87.0
Q ss_pred CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (435)
Q Consensus 272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt 351 (435)
++++++.++.++.+|++.|.+.+.+.+||++ + + +++|+++..++++. . ...++.++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~-~---~~~g~v~~~~l~~~---~----------~~~~~~~~---- 57 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVD---N-G---KVVGIVSARDLLGK---D----------PDETVEEI---- 57 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEHHHhhcc---C----------ccccHHHh----
Confidence 4677899999999999999988888999996 2 5 79999999999741 0 01233333
Q ss_pred cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+..+..++.+++++.+|+++|.+++.+.+||+|++|+++|+++..||+.
T Consensus 58 --------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 58 --------MSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred --------CCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 2346788999999999999999999999999999999999999999874
No 98
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=4.4e-10 Score=95.82 Aligned_cols=125 Identities=22% Similarity=0.378 Sum_probs=89.7
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhc-cCCCCCChhhhhhccHHHHHHHHHhh
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELG-NHGSNLTEEELETHTISAWKEGKAYL 259 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~-~~~~~l~~e~l~~~~i~~~~e~~~~~ 259 (435)
+++.+.++.++.+|+++|.+.++..+||+|++ ++++|++|..|+...+.... .+.............-....+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD----- 75 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH-----
Confidence 45688999999999999999999999999975 79999999999987553211 100000000000000000111
Q ss_pred cccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
+|.++++++.+++++.+|+..|.+++.+.+||++.+ +++ +++|+||.+||++
T Consensus 76 ---------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~-~~~---~~~Gvit~~di~~ 127 (128)
T cd04632 76 ---------AMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPD-DDT---KVVGILTKKDVLR 127 (128)
T ss_pred ---------HhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccC-CCC---cEEEEEEhHhhhc
Confidence 256788999999999999999999999999998521 235 7999999999875
No 99
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.19 E-value=3.3e-10 Score=117.92 Aligned_cols=121 Identities=15% Similarity=0.220 Sum_probs=97.9
Q ss_pred cccCCCccCCCCceEeCCCCCHHHHHHHHHh-----cCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCC
Q 013832 262 QIDSHGKAFPRPLVYAGPNDNLKDVARKILH-----NEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSS 336 (435)
Q Consensus 262 ~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~-----~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~ 336 (435)
+.+..|.+|+.+++++.++.++.+|++.|.+ ++...++|+|+ .+ +++|+++.+|++.. . +
T Consensus 129 ~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~---~~---~l~GvV~l~dLl~a------~-~-- 193 (449)
T TIGR00400 129 SDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE---SK---HLKGVLSIRDLILA------K-P-- 193 (449)
T ss_pred CcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC---CC---eEEEEEEHHHHhcC------C-C--
Confidence 3344566789999999999999999999985 45678899863 34 79999999998631 0 1
Q ss_pred ccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 013832 337 LPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 413 (435)
Q Consensus 337 ~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~ 413 (435)
..+++++ |.++++++++++++.+|++.|.++++..+||||++|+++|+||..|+++.+..+
T Consensus 194 ----~~~v~~i------------m~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~ 254 (449)
T TIGR00400 194 ----EEILSSI------------MRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE 254 (449)
T ss_pred ----CCcHHHH------------hCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh
Confidence 1234333 345788899999999999999999999999999999999999999999877654
No 100
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.19 E-value=3.2e-10 Score=93.72 Aligned_cols=108 Identities=21% Similarity=0.430 Sum_probs=88.2
Q ss_pred CCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhh
Q 013832 180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL 259 (435)
Q Consensus 180 ~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~ 259 (435)
.+++++.++.++.+|.+.|.+++...+||.|.+ ++++|++|..|++..+.... . .+ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~---~----------~~---~~----- 59 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDK---K----------SV---ED----- 59 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCc---c----------CH---HH-----
Confidence 467789999999999999999999999999864 89999999999876443110 0 01 11
Q ss_pred cccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
.|.+++.++.+++++.+|++.|.+++.+.+||++. +| +++|++|..+|++
T Consensus 60 ---------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~v~~~di~~ 109 (110)
T cd04605 60 ---------IMTRNVITATPDEPIDVAARKMERHNISALPVVDA---EN---RVIGIITSEDISK 109 (110)
T ss_pred ---------hcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC---CC---cEEEEEEHHHhhh
Confidence 14567889999999999999999999999999963 45 7999999999864
No 101
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.18 E-value=1.2e-09 Score=113.75 Aligned_cols=183 Identities=16% Similarity=0.196 Sum_probs=129.5
Q ss_pred HHHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChh
Q 013832 163 VSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEE 242 (435)
Q Consensus 163 i~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e 242 (435)
..+.++..++.++|- .+++++.++.|+.+|.++|.++++..+||+|+ +++++|+||..|+... . .
T Consensus 82 q~~~l~~VKv~~iMi--~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~-~gklvGIVT~rDL~~~-----~---~---- 146 (479)
T PRK07807 82 VAEVVAWVKSRDLVF--DTPVTLSPDDTVGDALALLPKRAHGAVVVVDE-EGRPVGVVTEADCAGV-----D---R---- 146 (479)
T ss_pred HHHHHhhcccccccc--cCCeEECCCCCHHHHHHHHHhcCCceEEEECC-CCeEEEEEeHHHHhcC-----c---c----
Confidence 344455666777773 46789999999999999999999999999995 4799999999997310 0 0
Q ss_pred hhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhH
Q 013832 243 ELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGI 322 (435)
Q Consensus 243 ~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dI 322 (435)
. ..+ .+ +|+.+++++.+++++.+|+++|.+++++.+||+|. ++ +++|+||.+||
T Consensus 147 --~-~~V---~d--------------iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~---~g---~lvGIIT~~DI 200 (479)
T PRK07807 147 --F-TQV---RD--------------VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDA---DG---RLVGVLTRTGA 200 (479)
T ss_pred --C-CCH---HH--------------hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcC---CC---eEEEEEEHHHH
Confidence 0 011 22 26788999999999999999999999999999963 45 79999999999
Q ss_pred HHHHHhhhcccCCCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEE
Q 013832 323 LKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIY 401 (435)
Q Consensus 323 l~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~-~g~lvGii 401 (435)
++........ + .. +.+.++ .++.+. ....+.++.|.+++++.| ++|- +|. -.
T Consensus 201 l~~~~~~~~~----~---~~--g~l~V~------------aav~~~--~~~~~~a~~Lv~aGvd~i-~~D~a~~~---~~ 253 (479)
T PRK07807 201 LRATIYTPAV----D---AA--GRLRVA------------AAVGIN--GDVAAKARALLEAGVDVL-VVDTAHGH---QE 253 (479)
T ss_pred HHHhhCCchh----h---hh--hccchH------------hhhccC--hhHHHHHHHHHHhCCCEE-EEeccCCc---cH
Confidence 9875532100 0 00 011111 122232 336788888999999996 6674 454 33
Q ss_pred eHHHHHHHHhhc
Q 013832 402 CRSDITALAKDK 413 (435)
Q Consensus 402 s~~DI~~~~~~~ 413 (435)
..-+.++.++++
T Consensus 254 ~~~~~i~~ik~~ 265 (479)
T PRK07807 254 KMLEALRAVRAL 265 (479)
T ss_pred HHHHHHHHHHHH
Confidence 444566666654
No 102
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.18 E-value=2.2e-10 Score=114.11 Aligned_cols=123 Identities=16% Similarity=0.285 Sum_probs=97.3
Q ss_pred cCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhcc
Q 013832 169 THTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHT 248 (435)
Q Consensus 169 ~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~ 248 (435)
..++.++|.....+++++++.|+.+|.+.|.+++...+||+|+ +++++|++|..|+...+.... .. . -.
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-~g~~iG~vt~~dl~~~~~~~~----~~-----~-~~ 264 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA-QQQVQGVFTDGDLRRWLVGGG----AL-----T-TP 264 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEecHHHHHHHHhCCC----Cc-----C-Cc
Confidence 4567777765434889999999999999999999999999996 489999999999876543110 00 0 01
Q ss_pred HHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832 249 ISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC 325 (435)
Q Consensus 249 i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~ 325 (435)
+ .+ +|.++++++.+++++.+|++.|.++++..+||++. ++ +++|+||.+||++.
T Consensus 265 v---~~--------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~---~lvGvIt~~di~~~ 318 (321)
T PRK11543 265 V---NE--------------AMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDE---NG---KLTGAINLQDFYQA 318 (321)
T ss_pred H---HH--------------hcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHhc
Confidence 1 12 26678889999999999999999999999999963 35 79999999999853
No 103
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.17 E-value=2e-10 Score=123.19 Aligned_cols=118 Identities=16% Similarity=0.273 Sum_probs=95.7
Q ss_pred cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832 269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP 348 (435)
Q Consensus 269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~ 348 (435)
+|.+++.++++++++.++.+.|.+++.+.+||+|+ ++ +++|++|.+|+.+.+..... ....++.++
T Consensus 452 im~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~---~g---~lvGiVt~~dL~~~l~~~~~-------~~~~~v~di- 517 (574)
T PRK01862 452 LIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD---DG---RFRGAVALKDITSDLLDKRD-------TTDKTAADY- 517 (574)
T ss_pred HhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC---CC---eEEEEEEHHHHHHHhhcccc-------cccchHHHh-
Confidence 36778889999999999999999999999999963 45 79999999999875532210 001233333
Q ss_pred CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEeHHHHHHHHh
Q 013832 349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN--DSLLDIYCRSDITALAK 411 (435)
Q Consensus 349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~--g~lvGiis~~DI~~~~~ 411 (435)
+.+++.++++++++.+|+++|.+++++.+||||++ ++++|+||++|+++...
T Consensus 518 -----------m~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 518 -----------AHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred -----------ccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 34578899999999999999999999999999976 48999999999998654
No 104
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.17 E-value=1.8e-10 Score=98.40 Aligned_cols=113 Identities=16% Similarity=0.241 Sum_probs=87.9
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
+++++.++.++.+|++.|.++++..+||+|++ ++++|++|..|++..+....... . .++ .+
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~-~--------~~v---~~------ 63 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQP-S--------DPV---SK------ 63 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCC-C--------CcH---HH------
Confidence 56789999999999999999999999999964 78999999999987654321110 0 011 22
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHH---------HhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKI---------LHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV 326 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m---------~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l 326 (435)
+|.+++.++.+++++.+++++| .+.+.+++||++ ++| +++||+|.+||++++
T Consensus 64 --------im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~~~---~~~Givt~~Dl~~~~ 124 (124)
T cd04608 64 --------ALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKE---KQE---KPIGIVTKIDLLSYI 124 (124)
T ss_pred --------HhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccc---ccc---ceEEEEehhHhhhhC
Confidence 2667889999999999999964 344678888885 335 799999999998763
No 105
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.17 E-value=6.6e-10 Score=92.00 Aligned_cols=109 Identities=21% Similarity=0.380 Sum_probs=87.5
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
.++++..+.++.+|.+.|.++++..+||.|.+.++++|++|..|+...+..... . ..+ ...
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~---~--------~~~---~~~----- 62 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE---D--------LDL---RDL----- 62 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC---c--------CCH---HHH-----
Confidence 578899999999999999999999999998643799999999999875532110 0 011 111
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
+ +++.++.+++++.+|++.|.+++.+.+||++. .| +++|++|.+|+++
T Consensus 63 ---------~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~di~~ 110 (111)
T cd04590 63 ---------L-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE---YG---GTAGLVTLEDILE 110 (111)
T ss_pred ---------h-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC---CC---CEEEEeEHHHhhc
Confidence 2 46788999999999999999999999999963 35 7999999999864
No 106
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.17 E-value=8.5e-10 Score=91.41 Aligned_cols=110 Identities=15% Similarity=0.255 Sum_probs=87.3
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++++++.+.++.+|.+.|.+++...+||.|+ ++++|+++..|+...+...... + .-.+ .+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~--~-------~~~i---~~------ 61 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLP--S-------STPV---GE------ 61 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCC--C-------CCCH---HH------
Confidence 4568899999999999999999999999996 6899999999987654311000 0 0011 11
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC 325 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~ 325 (435)
+|.+++..+.+++++.++++.|.+++.+.+||++ ++ +++|++|..++++|
T Consensus 62 --------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~----~~---~~~G~it~~dl~~~ 111 (111)
T cd04589 62 --------IATFPLITVDPDDFLFNALLLMTRHRIHRVVVRE----GG---EVVGVLEQTDLLSF 111 (111)
T ss_pred --------HhCCCcEEECCCCcHHHHHHHHHHhCccEEEEee----CC---EEEEEEEhHHhhcC
Confidence 1456788999999999999999999999999995 25 79999999999764
No 107
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.17 E-value=5.7e-10 Score=94.39 Aligned_cols=121 Identities=25% Similarity=0.419 Sum_probs=89.5
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCCh--hhhhhccHHHHHHHHHh
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTE--EELETHTISAWKEGKAY 258 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~--e~l~~~~i~~~~e~~~~ 258 (435)
++++++++.++.+|.+.|.+++...+||+|.+.++++|+++..|+...+............ .+..... +.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---- 74 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEP---VRS---- 74 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcC---HHH----
Confidence 4678899999999999999999999999997448999999999998755321100000000 0000001 111
Q ss_pred hcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 259 LNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 259 ~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
++..+++++.+++++.++++.|.+.+.+.+||++. +| +++|+||.+||++
T Consensus 75 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~---~~---~~~Gvit~~di~~ 124 (125)
T cd04631 75 ----------IMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDD---DG---KLVGIVTERDLLK 124 (125)
T ss_pred ----------HhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcC---CC---cEEEEEEHHHhhc
Confidence 24567889999999999999999999999999962 35 7999999999975
No 108
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.17 E-value=2.8e-10 Score=94.27 Aligned_cols=102 Identities=16% Similarity=0.308 Sum_probs=82.6
Q ss_pred eCCCCCHHHHHHHHHhcC-----CcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832 277 AGPNDNLKDVARKILHNE-----VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (435)
Q Consensus 277 v~~~~sL~da~~~m~~~~-----v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt 351 (435)
+.+++++.++++.|.+++ +..+||+++ ++ +++|+++.+++++. . ...++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~~l~~~------~-------~~~~v~~~---- 58 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE---EG---RLLGVVSLRDLLLA------D-------PDTPVSDI---- 58 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECC---CC---CEEEEEEHHHHhcC------C-------CcchHHHH----
Confidence 578999999999998877 478999963 35 79999999998641 0 01223332
Q ss_pred cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 013832 352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 409 (435)
Q Consensus 352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~ 409 (435)
+..++.++.+++++.++++.|.+++.+.+||+|++|+++|+||+.||++.
T Consensus 59 --------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 59 --------MDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred --------hCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 23468899999999999999999999999999988999999999999864
No 109
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.17 E-value=5.3e-10 Score=93.19 Aligned_cols=114 Identities=21% Similarity=0.392 Sum_probs=85.6
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++++++.+.++.+|++.|.++++..+||+|+ .++++|+++..|+...+..... .....+..-++ .+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~----~~~~~~~~~~v---~~------ 67 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK-EGKYVGTISLTDILWKLKGLEN----LDLERLVDLKV---ID------ 67 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC-CCcEEEEEeHHHHHHHhhccCc----hhHHHHhCCcH---HH------
Confidence 5788999999999999999999999999996 4799999999999765532110 00000000011 11
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
+|.+++.++.+++++.+|+..|.+.+ .+||+++ ++ +++|++|.+|+++
T Consensus 68 --------~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~---~~---~~~Gvit~~dil~ 115 (116)
T cd04643 68 --------VMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDD---DG---IFIGIITRREILK 115 (116)
T ss_pred --------HhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeC---CC---eEEEEEEHHHhhc
Confidence 25667889999999999999998765 5999962 35 7999999999975
No 110
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.16 E-value=8.2e-10 Score=92.22 Aligned_cols=112 Identities=20% Similarity=0.328 Sum_probs=88.1
Q ss_pred eEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhcc
Q 013832 182 VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNR 261 (435)
Q Consensus 182 vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~~ 261 (435)
+.++++++++.+|.+.|.+.++..+||.|++ ++++|+++..|+...+...... ....+ .+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~---------~~~~~---~~------- 62 (115)
T cd04593 3 PPVLSATTPLREAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAG---------EPSAV---DE------- 62 (115)
T ss_pred CcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhccccc---------ccccH---HH-------
Confidence 4578899999999999999999999999964 7999999999998755321100 00001 11
Q ss_pred cccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 262 QIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 262 ~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
+|..++.++.+++++.+|+++|.+++.+.+||++.. ..| +++|+||.++|++
T Consensus 63 -------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~-~~~---~~~Gvit~~di~~ 114 (115)
T cd04593 63 -------VATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRG-NPG---QVLGLLTRENVLL 114 (115)
T ss_pred -------hccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCC-CCC---eEEEEEEhHHhhc
Confidence 145678899999999999999999999999999732 125 7999999999975
No 111
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.16 E-value=1e-10 Score=121.61 Aligned_cols=181 Identities=15% Similarity=0.237 Sum_probs=135.6
Q ss_pred HHHHHHhhc--cCceecccCCCCCeEEeCCCccHHHHHHHHHH-----CCCceeeeeeCCCCeEEEeeehHHHHHHHHHh
Q 013832 160 RHRVSVFLS--THTAYELLPESGKVVALDIDLPVKQAFHILYE-----QGISMAPLWDFSKARFVGVLSASDFILILREL 232 (435)
Q Consensus 160 ~~~i~~~l~--~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~-----~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~ 232 (435)
+..++.+++ ..++.++|. ..+++++.+.|+.+|.+.|.+ +++..++|.|+ .++++|+++.+|++..
T Consensus 119 r~~i~~ll~~~e~tvg~iMt--~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~-~~~l~GvV~l~dLl~a---- 191 (449)
T TIGR00400 119 RKAINLLLSYSDDSAGRIMT--IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE-SKHLKGVLSIRDLILA---- 191 (449)
T ss_pred HHHHHHHhCCCcchHHHhCc--CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC-CCeEEEEEEHHHHhcC----
Confidence 334555543 578999995 578999999999999999986 56678898886 4799999999998631
Q ss_pred ccCCCCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCe
Q 013832 233 GNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQ 312 (435)
Q Consensus 233 ~~~~~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~ 312 (435)
.. . ..+ ++ +|.++++++.+++++.+|++.|.+++...+||+| +.| +
T Consensus 192 --~~-~--------~~v---~~--------------im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD---~~g---~ 237 (449)
T TIGR00400 192 --KP-E--------EIL---SS--------------IMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD---NEG---R 237 (449)
T ss_pred --CC-C--------CcH---HH--------------HhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc---CCC---e
Confidence 10 0 011 22 1567788999999999999999999999999996 345 7
Q ss_pred EEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEc
Q 013832 313 LLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVD 392 (435)
Q Consensus 313 lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD 392 (435)
++|++|.+|+++.+.+... ++++. ...++..+++.+.+++..|.++++..++|.
T Consensus 238 lvGiIt~~Dil~~l~~~~~-------------ed~~~------------~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~- 291 (449)
T TIGR00400 238 LVGIVTVDDIIDVIQSEAT-------------EDFYM------------IAAVKPLDDSYFDTSILVMAKNRIIWLLVL- 291 (449)
T ss_pred EEEEEEHHHHHHHHHhhhH-------------HHHHH------------hcCCCCCcchhhhchHHHHHHhccchHHHH-
Confidence 9999999999998876422 11110 122233457788999999999999999885
Q ss_pred CCCcEEEEEeHHHHHHHHh
Q 013832 393 DNDSLLDIYCRSDITALAK 411 (435)
Q Consensus 393 ~~g~lvGiis~~DI~~~~~ 411 (435)
.+.|+++ ..++..+.
T Consensus 292 ---~~~~~~t-~~ii~~f~ 306 (449)
T TIGR00400 292 ---LVSSTFT-ATIISNYE 306 (449)
T ss_pred ---HHHHHHH-HHHHHHHH
Confidence 6778888 66666543
No 112
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.16 E-value=3.4e-10 Score=95.09 Aligned_cols=117 Identities=19% Similarity=0.395 Sum_probs=89.1
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCC-c-cccccccccccCc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSS-L-PILKLPICAIPVG 350 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~-~-~~~~~~v~~l~ig 350 (435)
++.++.+++++.+|++.|.+.+..++||++. ++ +++|+++..++++.....+...... . .....++.++
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~--- 72 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDE---EG---RLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEI--- 72 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHH---
Confidence 4678899999999999999999999999963 35 7999999999987654321110000 0 0001222222
Q ss_pred ccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 351 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 351 t~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.+++.++.+++++.+|+++|.+++.+.+||+|+ |+++|+++..||++
T Consensus 73 ---------~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 73 ---------MTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred ---------hhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 2357789999999999999999999999999987 99999999999875
No 113
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.16 E-value=6.3e-10 Score=92.10 Aligned_cols=109 Identities=21% Similarity=0.322 Sum_probs=87.6
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
+.++++++.++.+|.+.|.+.+...+||+|. .++++|+++..|+...+...... -.+ .+.
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~-----------~~v---~~~----- 61 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDG-DGHLVGLLTRDDLIRALAEGGPD-----------APV---RGV----- 61 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECC-CCcEEEEeeHHHHHHHHHhcCCC-----------CcH---HHH-----
Confidence 4567899999999999999999999999996 47999999999998755421110 011 111
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
|..++.++.+++++.+|++.|.+++...+||++. .+ +++|++|.+|+.+
T Consensus 62 ---------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~dl~~ 110 (111)
T cd04639 62 ---------MRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG---SG---RLVGLVTLENVGE 110 (111)
T ss_pred ---------hcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcC---CC---CEEEEEEHHHhhc
Confidence 4567889999999999999999999999999962 35 7999999999864
No 114
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.16 E-value=3.8e-10 Score=94.13 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=84.5
Q ss_pred CeEEeCCCccHHHHHHHHHHCC-CceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhh
Q 013832 181 KVVALDIDLPVKQAFHILYEQG-ISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL 259 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~-i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~ 259 (435)
++.+++++.++.+|.+.|.+++ ...+||+|. +++++|+++..|++........ ..+ +.+.+.
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~-----------~~~---v~~~~~-- 64 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN-EGRYVGIISLADLRAIPTSQWA-----------QTT---VIQVMT-- 64 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcC-CCcEEEEEEHHHHHHHHHhhcc-----------ccc---hhhhhc--
Confidence 4568899999999999998775 899999996 4799999999998765431110 001 122211
Q ss_pred cccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
...++.++.+++++.+|++.|.+++.+.+||+++ ++ +++|++|.+||++
T Consensus 65 ----------~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~---~~---~~~Gvl~~~di~~ 113 (114)
T cd04801 65 ----------PAAKLVTVLSEESLAEVLKLLEEQGLDELAVVED---SG---QVIGLITEADLLR 113 (114)
T ss_pred ----------ccccceEECCCCcHHHHHHHHHHCCCCeeEEEcC---CC---cEEEEEeccceec
Confidence 0123568999999999999999999999999963 35 7999999999864
No 115
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.16 E-value=5.4e-10 Score=97.74 Aligned_cols=126 Identities=27% Similarity=0.480 Sum_probs=93.4
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcc----cCCCcccccccccccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRH----CSSSLPILKLPICAIP 348 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~----~~~~~~~~~~~v~~l~ 348 (435)
+++++.+++++.+|++.|.+.+++.+||++ + + +++|+++..++++++...... .+.....+..++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd---~-~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 73 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLD---G-G---KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREF- 73 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeE---C-C---eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhe-
Confidence 467899999999999999999999999996 2 5 799999999999877543210 000011112222221
Q ss_pred Cccc-----------ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 349 VGTW-----------VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 349 igt~-----------~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
..| ...+.+.+.+++.++.+++++.+|++.|.+++.+.+||+++ |+++|++++.|++.
T Consensus 74 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 74 -INWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred -eehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 011 00123445568899999999999999999999999999997 89999999999874
No 116
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.15 E-value=8e-10 Score=92.95 Aligned_cols=118 Identities=24% Similarity=0.455 Sum_probs=88.8
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCC-ChhhhhhccHHHHHHHHHhh
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNL-TEEELETHTISAWKEGKAYL 259 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l-~~e~l~~~~i~~~~e~~~~~ 259 (435)
++++++++.++.+|.+.|.++++..+||+|. ++++|++|..|+...+.......... ....+....+.
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 70 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVS--------- 70 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHH---------
Confidence 4678999999999999999999999999995 89999999999987554221100000 00000111111
Q ss_pred cccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
..|..++.++.+++++.+|+.+|.+.+.+.+||++ + + +++|++|.+|+++
T Consensus 71 --------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~Gvi~~~dl~~ 120 (121)
T cd04633 71 --------DIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD---D-G---KLVGIVTRTDILR 120 (121)
T ss_pred --------HHccCCceEECCCCcHHHHHHHHHHcCCCcccEEE---C-C---EEEEEEEHHHhhc
Confidence 12556788999999999999999999999999996 2 5 7999999999975
No 117
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.15 E-value=2.8e-10 Score=116.44 Aligned_cols=123 Identities=20% Similarity=0.294 Sum_probs=99.7
Q ss_pred ceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHH
Q 013832 171 TAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS 250 (435)
Q Consensus 171 ~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~ 250 (435)
++.+++ ..+.+++++.+|+.+|...|.++|+.++.++|. .+...||+|.+|+...+..-+.. .+ .
T Consensus 150 rv~~~~--~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~-~~~~~GIvT~~dl~~~v~~~g~~---~~------~--- 214 (610)
T COG2905 150 RVGEVK--TLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD-SGPLLGIVTRKDLRSRVIADGRS---KT------Q--- 214 (610)
T ss_pred HHHHHh--cCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC-CCCccceeehHHHHHHHHhcCCC---cc------c---
Confidence 344455 346789999999999999999999999988885 47899999999998866543321 10 0
Q ss_pred HHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhh
Q 013832 251 AWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRY 329 (435)
Q Consensus 251 ~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~ 329 (435)
... .+|+.|++++.+.+-+.||+.+|.+++++++||.. +| +++||||..||++....+
T Consensus 215 ~V~--------------evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e----~g---q~~Gilt~~dIl~l~s~~ 272 (610)
T COG2905 215 KVS--------------EVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE----DG---QPLGILTLTDILRLFSQN 272 (610)
T ss_pred chh--------------hhhccCceeecCcchHHHHHHHHHHhCCceeeeec----CC---eeeEEeeHHHHHHhhCCC
Confidence 111 13899999999999999999999999999999993 57 899999999999876643
No 118
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.15 E-value=5.4e-10 Score=92.47 Aligned_cols=102 Identities=16% Similarity=0.220 Sum_probs=84.7
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
....+.+++++.++...|.+.+...+||+++...+| +++|+++..++.+.... +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~---~~~G~v~~~dl~~~~~~------------------~----- 56 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESP---RLVGYILRSQLVVALKN------------------Y----- 56 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCC---EEEEEEeHHHHHHHHHH------------------h-----
Confidence 456789999999999999999999999996310035 79999999999765432 1
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
|.+++.++++++++.+++++|.+++.+.+||++ +|+++|++|+.||++
T Consensus 57 -------m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 57 -------IDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred -------ccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 113677899999999999999999999999995 789999999999875
No 119
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.15 E-value=1.4e-09 Score=91.78 Aligned_cols=121 Identities=17% Similarity=0.365 Sum_probs=90.4
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++++++++.++.+|.+.|.++++..+||+|. ++++|+++..|+...+....... . +... ....+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~-~---~~~~--~~~~~~~~~~~-- 71 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTA-G---ETEK--DLATLNRRAHQ-- 71 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccc-c---chHH--HHHHHHhHHHH--
Confidence 5678999999999999999999999999995 79999999999987654322110 0 0000 00001111111
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC 325 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~ 325 (435)
+|..+++++.+++++.++++.|.+++...+||++. .+ +++|++|..+++++
T Consensus 72 --------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~---~~---~~~Gvit~~dll~~ 122 (122)
T cd04637 72 --------IMTRDPITVSPDTPVDEASKLLLENSISCLPVVDE---NG---QLIGIITWKDLLKY 122 (122)
T ss_pred --------hhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC---CC---CEEEEEEHHHhhhC
Confidence 25577899999999999999999999999999963 35 79999999999753
No 120
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.15 E-value=4.2e-10 Score=115.62 Aligned_cols=120 Identities=10% Similarity=0.156 Sum_probs=97.8
Q ss_pred cCCC--CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccc
Q 013832 269 AFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 346 (435)
Q Consensus 269 ~~~~--~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~ 346 (435)
+|++ ++++++.++++.++++.|.+++.+|+||.+++ .+ +++|+++.+|++.++.. . ..++.+
T Consensus 196 iMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~--~d---~ivGiv~~kDll~~~~~---~--------~~~l~~ 259 (408)
T TIGR03520 196 VMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET--ID---NITGVLYIKDLLPHLNK---K--------NFDWQS 259 (408)
T ss_pred eCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC--CC---ceEEEEEHHHHHhHhcc---C--------CCCHHH
Confidence 4654 78999999999999999999999999999632 23 69999999999865421 0 011222
Q ss_pred ccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccccc
Q 013832 347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH 417 (435)
Q Consensus 347 l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~~~ 417 (435)
+ + +++.++++++++.++++.|.+++.+..+|||+.|.++|+||..||+..+-...+.+
T Consensus 260 ~-----~--------~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de 317 (408)
T TIGR03520 260 L-----L--------REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDE 317 (408)
T ss_pred H-----c--------CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCc
Confidence 2 1 36789999999999999999999999999999999999999999999886655543
No 121
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.15 E-value=4.6e-10 Score=92.15 Aligned_cols=104 Identities=13% Similarity=0.217 Sum_probs=84.9
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++++++++.++.+|++.|.+++...+||.|+ .|+++|++|..|+..... . .+ .+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~-~g~~~Giv~~~dl~~~~~------~----------~~---~~------ 55 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA-DGQPLGFVTRREAARASG------G----------CC---GD------ 55 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEeHHHHHHhcc------c----------ch---hh------
Confidence 4568899999999999999999999999986 489999999999875210 0 01 11
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
.|.+....+.+++++.+|++.|.++++..+||++. .+ +++|++|.+++++
T Consensus 56 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvi~~~~l~~ 105 (106)
T cd04582 56 --------HAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDE---DG---RYVGEVTQRSIAD 105 (106)
T ss_pred --------hcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECC---CC---cEEEEEEHHHhhc
Confidence 14456678999999999999999999999999963 35 7999999999874
No 122
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.14 E-value=7.4e-10 Score=95.15 Aligned_cols=131 Identities=19% Similarity=0.264 Sum_probs=90.4
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
.++++.++.++.+|++.|.++++..+||+|++ ++++|+++..|+...+................... ...... ..
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~ 76 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLD-ESKIKK---LL 76 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccc-hHHHHH---Hc
Confidence 35688999999999999999999999999964 79999999999987664321110000000000000 000000 00
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC 325 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~ 325 (435)
.. ..+.+|.+++..+.+++++.+|++.|.+.+.+.+||++ + | +++|++|..|++++
T Consensus 77 ~~--~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~-~---~~iGvit~~dl~~~ 132 (132)
T cd04636 77 GK--KVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD---D-G---KLVGIISRGDIIRS 132 (132)
T ss_pred CC--CHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE---C-C---EEEEEEEHHHhhcC
Confidence 00 00113567788999999999999999999999999996 2 5 79999999999863
No 123
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.13 E-value=6.5e-10 Score=93.23 Aligned_cols=113 Identities=12% Similarity=0.208 Sum_probs=86.6
Q ss_pred CceEeCCCCCHHHHHHHHHhcC-CcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832 273 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~-v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt 351 (435)
++.++.+++++.+|++.|.+.+ .+.+||++ + | +++|+++..++++++...+... .....++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd---~-~---~~~G~v~~~~l~~~~~~~~~~~----~~~~~~v~~----- 65 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVD---D-G---RPVGLIMREALMELLSTPYGRA----LYGKKPVSE----- 65 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEE---C-C---eeEEEEEHHHHHHHHhchhhHH----HHcCCcHHH-----
Confidence 4567899999999999998887 89999996 2 5 7999999999987655321000 000122332
Q ss_pred cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCC---EEEEEcCCCcEEEEEeHHHHHH
Q 013832 352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVS---SIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~---~lPVVD~~g~lvGiis~~DI~~ 408 (435)
.|.++..++.+++++.+|+++|.+++.. .+|||+++|+++|+||+.|+++
T Consensus 66 -------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 66 -------VMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred -------hcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 2345788999999999999999998864 4478988999999999999874
No 124
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.13 E-value=2e-09 Score=89.03 Aligned_cols=109 Identities=18% Similarity=0.309 Sum_probs=86.9
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++.+++.+.++.+|.+.|.++++..+||.|+ ++++|+++..|+...+... . . ....++ .+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~--~---~----~~~~~i---~~~----- 62 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAE--G---L----DPDTPV---SEV----- 62 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhcc--C---C----CccCCH---HHH-----
Confidence 5678899999999999999999999999996 7999999999987543211 0 0 000112 111
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
|..+++.+.+++++.++++.|.+.+.+.+||++ + | +++|++|.+||++
T Consensus 63 ---------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~Giit~~di~~ 110 (111)
T cd04800 63 ---------MTAPPITIPPDATVFEALLLMLERGIHHLPVVD---D-G---RLVGVISATDLLR 110 (111)
T ss_pred ---------hCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEHHHhhc
Confidence 456788999999999999999999999999996 2 5 7999999999974
No 125
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.13 E-value=1.2e-09 Score=91.59 Aligned_cols=120 Identities=19% Similarity=0.357 Sum_probs=88.7
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++.+++.+.++.+|++.|.++++..+||+|. ++++|+++..|+.......... ....+.... ... ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~---~~~~~~~~~-~~~--~~~~--- 70 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATT---LDIWELYYL-LSK--IKVS--- 70 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhccccc---ccchhhhhh-hcc--cCHH---
Confidence 4678999999999999999999999999996 7999999999997654321100 000000000 000 0000
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
.+|.++++++.+++++.+++..|.+.+.+.+||++. .| +++|++|..||++
T Consensus 71 -------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvvt~~di~~ 121 (122)
T cd04585 71 -------DIMTRDPITVSPDASVEEAAELMLERKISGLPVVDD---QG---RLVGIITESDLFR 121 (122)
T ss_pred -------HhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECC---CC---cEEEEEEHHHhhh
Confidence 125678899999999999999999999999999962 35 7999999999975
No 126
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.12 E-value=1.4e-09 Score=90.29 Aligned_cols=110 Identities=21% Similarity=0.400 Sum_probs=86.9
Q ss_pred eEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhcc
Q 013832 182 VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNR 261 (435)
Q Consensus 182 vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~~ 261 (435)
..++.++.++.+|++.|.+.++..+||+|. .++++|++|..|+...+.... .+....+ .+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~dl~~~~~~~~---------~~~~~~i---~~------- 62 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDD-KKRLVGIITRYDVLSYALESE---------ELKDAKV---RE------- 62 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcC-CCCEEEEEEHHHHHHhhhhhh---------hhcCCcH---HH-------
Confidence 567899999999999999999999999996 479999999999876432110 0011111 11
Q ss_pred cccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 262 QIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 262 ~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
+|..++.++.+++++.++++.|.+++.+.+||++ +.| +++|++|..++++
T Consensus 63 -------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd---~~g---~~~Gvvt~~dl~~ 112 (113)
T cd04615 63 -------VMNSPVITIDANDSIAKARWLMSNNNISRLPVLD---DKG---KVGGIVTEDDILR 112 (113)
T ss_pred -------hccCCceEECCCCcHHHHHHHHHHcCCCeeeEEC---CCC---eEEEEEEHHHhhc
Confidence 1456788999999999999999999999999996 245 7999999999864
No 127
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.12 E-value=2.1e-09 Score=88.92 Aligned_cols=108 Identities=22% Similarity=0.397 Sum_probs=87.3
Q ss_pred CCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhh
Q 013832 180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL 259 (435)
Q Consensus 180 ~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~ 259 (435)
.++++++.+.++.+|.+.|.+++...+||.|. ++++|+++..|+...+.... . ...+ .+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~-~----------~~~~---~~~---- 61 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGL-G----------HAPV---KDY---- 61 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhccc-c----------cCcH---HHH----
Confidence 35778999999999999999999999999996 79999999999876442110 0 0011 111
Q ss_pred cccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
|.++++++.+++++.+|+..|.+++.+.+||++ +| +++|++|..|+++
T Consensus 62 ----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~----~~---~~~Gvvt~~di~~ 109 (110)
T cd04595 62 ----------MSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE----DG---RLVGIVTRTDLLR 109 (110)
T ss_pred ----------hcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe----CC---EEEEEEEhHHhhc
Confidence 456788999999999999999999999999995 35 7999999999864
No 128
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.12 E-value=2.8e-10 Score=90.98 Aligned_cols=74 Identities=22% Similarity=0.313 Sum_probs=59.7
Q ss_pred EEEE-ecCCCcEEEEEeecCCCCCCCCCccccCCCCeEEEEE-EcCCceEEEEEEECCeeecCCCCCeeeCCCCCeeeE
Q 013832 28 MRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIW-SIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTV 104 (435)
Q Consensus 28 ~~f~-w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~-~L~~g~~~ykF~VDg~w~~d~~~~~~~d~~G~~nnv 104 (435)
++|+ |...|++|.|.|+|++|.. .+|++. .+|.|++++ .|.+|.|+|+|+|||.|..||..+...-..+...|.
T Consensus 8 v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~--~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~ 83 (85)
T cd02858 8 VTFRLFAPKANEVQVRGSWGGAGS-HPMTKD--EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSG 83 (85)
T ss_pred EEEEEECCCCCEEEEEeecCCCcc-EeCeEC--CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeeccccccee
Confidence 5665 4556999999999998876 699885 479999998 488899999999999999999998655444444443
No 129
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12 E-value=1.3e-09 Score=90.33 Aligned_cols=109 Identities=13% Similarity=0.269 Sum_probs=86.8
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++.+++.+.++.+|++.|.+++...+||+|++ ++++|+++..|+....... . .....+ .+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~--~--------~~~~~v---~~~----- 62 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFE--S--------FLEKKV---FNI----- 62 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhc--c--------cccCcH---HHH-----
Confidence 46788999999999999999999999999864 7999999999987543210 0 000011 111
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
|.+++.++.+++++.+|+..|.+++.+.+||++ + + +++|+||..||+.
T Consensus 63 ---------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~G~it~~di~~ 110 (111)
T cd04626 63 ---------VSQDVFYVNEEDTIDEALDIMREKQIGRLPVVD---D-N---KLIGVVRTKDILD 110 (111)
T ss_pred ---------hcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEhHHhcc
Confidence 456788999999999999999999999999996 2 5 7999999999863
No 130
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.11 E-value=1.1e-09 Score=91.05 Aligned_cols=112 Identities=25% Similarity=0.406 Sum_probs=87.4
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++++++++.++.+|.+.|.++++..+||+|.+ ++++|+++..|++..+........ ....+ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~-------~~~~v---~~------ 64 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCD-------GVATV---RD------ 64 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccC-------CCccH---HH------
Confidence 46788999999999999999999999999964 799999999998865532110000 00011 11
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
.|..++.++.+++++.+|++.|.+++.+.+||++ + | +++|++|.++|++
T Consensus 65 --------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~Gvit~~di~~ 113 (114)
T cd04629 65 --------IMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD---D-G---KLVGQISRRDVLR 113 (114)
T ss_pred --------HhccCceEECCCCcHHHHHHHHHHhCCCccCEEE---C-C---EEEEEEEHHHHhc
Confidence 1445778899999999999999999999999996 2 5 7999999999975
No 131
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.11 E-value=1.3e-09 Score=94.57 Aligned_cols=124 Identities=13% Similarity=0.282 Sum_probs=88.4
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChh--hhhh-----cc--HHH
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEE--ELET-----HT--ISA 251 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e--~l~~-----~~--i~~ 251 (435)
++.++..+.++.+|++.|.+++...+||+|+ .++++|++|..|++..+...... ..... .+.. .. ...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~-~~~~~Giv~~~dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 78 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD-NGKPVGVITYRDLAFAEFEDNER--GLPKKSIKMKRKAGQKRYRYVKE 78 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECC-CCCEEEEEeHHHHHHHhhccccc--ccchhhhhhhhhccccccccccc
Confidence 3567899999999999999999999999996 48999999999998755321100 00000 0000 00 000
Q ss_pred HHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 252 WKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 252 ~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
..... ..+|..++..+.+++++.+|++.|.+++.+.+||++ + | +++|+||.++|++
T Consensus 79 ~~~~v----------~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~---~-~---~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVA----------EDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD---N-D---NIVGVITKTDICR 134 (135)
T ss_pred ccccH----------HHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe---C-C---EEEEEEEHHHHhh
Confidence 00000 012567788999999999999999999999999996 2 5 7999999999975
No 132
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.11 E-value=5.9e-10 Score=108.04 Aligned_cols=108 Identities=17% Similarity=0.236 Sum_probs=88.8
Q ss_pred cCCCC-ceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccc
Q 013832 269 AFPRP-LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI 347 (435)
Q Consensus 269 ~~~~~-~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l 347 (435)
+|.++ +.++.+++++.+|++.|.+.+++.+||+++ +| +++|+++..|+++.+.... ....++.++
T Consensus 160 im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~---~g---~~~Givt~~dl~~~~~~~~--------~~~~~v~~i 225 (268)
T TIGR00393 160 LMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE---NN---QLVGVFTDGDLRRALLGGG--------SLKSEVRDF 225 (268)
T ss_pred HhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC---CC---CEEEEEEcHHHHHHHhcCC--------cccCcHHHh
Confidence 46667 889999999999999999999999999963 35 7999999999987643210 012344444
Q ss_pred cCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEe
Q 013832 348 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYC 402 (435)
Q Consensus 348 ~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis 402 (435)
|.++++++.+++++.+|+++|.+++++.+||||++|+++|+|+
T Consensus 226 ------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 226 ------------MTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred ------------CCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 3457889999999999999999999999999999899999984
No 133
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.11 E-value=1.3e-09 Score=114.37 Aligned_cols=167 Identities=18% Similarity=0.255 Sum_probs=119.3
Q ss_pred CCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhh
Q 013832 180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL 259 (435)
Q Consensus 180 ~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~ 259 (435)
.++++++++.++.+|.++|.++++..+||+|+ .++++|++|..|+.... .. . ..+ .+.
T Consensus 95 ~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~DL~~~~----~~--~--------~~V---~di---- 152 (486)
T PRK05567 95 TDPVTVTPDTTLAEALALMARYGISGVPVVDE-NGKLVGIITNRDVRFET----DL--S--------QPV---SEV---- 152 (486)
T ss_pred CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc-CCEEEEEEEHHHhhhcc----cC--C--------CcH---HHH----
Confidence 57889999999999999999999999999996 58999999999984310 00 0 011 221
Q ss_pred cccccCCCccCC-CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcc
Q 013832 260 NRQIDSHGKAFP-RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP 338 (435)
Q Consensus 260 ~~~~~~~g~~~~-~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~ 338 (435)
|. ++++++.+++++.+|++.|.+++++.+||++. .+ +++|++|.+||++.+... ...
T Consensus 153 ----------m~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe---~g---~lvGiIT~~DLl~~~~~p--~a~---- 210 (486)
T PRK05567 153 ----------MTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD---NG---RLKGLITVKDIEKAEEFP--NAC---- 210 (486)
T ss_pred ----------cCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEEhHHhhhhhhCC--Ccc----
Confidence 44 68899999999999999999999999999963 45 799999999999875311 000
Q ss_pred ccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHH
Q 013832 339 ILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDIT 407 (435)
Q Consensus 339 ~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~-~g~lvGiis~~DI~ 407 (435)
...-+.+.++. .+...++ -.++++.|.+++++.+ |+|. +|+..++++.-+.+
T Consensus 211 --~d~~g~l~V~a------------ai~~~~~--~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i 263 (486)
T PRK05567 211 --KDEQGRLRVGA------------AVGVGAD--NEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREI 263 (486)
T ss_pred --cccCCCEEEEe------------ecccCcc--hHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHH
Confidence 00111222221 2223332 2788899999999966 6664 67877766554433
No 134
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.11 E-value=7.9e-10 Score=118.68 Aligned_cols=132 Identities=16% Similarity=0.177 Sum_probs=102.8
Q ss_pred HHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhh
Q 013832 164 SVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEE 243 (435)
Q Consensus 164 ~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~ 243 (435)
.+.+...++.|+|.+ ++.++++++++.+|.+.|.+++...+||+|+ +++++|++|..|+.+.+.....
T Consensus 441 ~~~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~-~g~lvGiVt~~dL~~~l~~~~~--------- 508 (574)
T PRK01862 441 RERLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDD-DGRFRGAVALKDITSDLLDKRD--------- 508 (574)
T ss_pred hhHHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcC-CCeEEEEEEHHHHHHHhhcccc---------
Confidence 455667788888744 5668999999999999999999999999996 4799999999998764431100
Q ss_pred hhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHH
Q 013832 244 LETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGIL 323 (435)
Q Consensus 244 l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl 323 (435)
.... ..++ .|.+++.++.+++++.+|+++|.+++.+.+||+|++ +.+ +++|+||++|++
T Consensus 509 ~~~~---~v~d--------------im~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~-~~~---~liGvIt~~DIl 567 (574)
T PRK01862 509 TTDK---TAAD--------------YAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESE-ASP---TLAGVVYKTSLL 567 (574)
T ss_pred cccc---hHHH--------------hccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCC-CCC---eEEEEEEHHHHH
Confidence 0000 1122 256778899999999999999999999999999742 224 799999999999
Q ss_pred HHHHh
Q 013832 324 KCVCR 328 (435)
Q Consensus 324 ~~l~~ 328 (435)
+.+.+
T Consensus 568 ~~l~~ 572 (574)
T PRK01862 568 DAYRR 572 (574)
T ss_pred HHHHh
Confidence 88754
No 135
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.11 E-value=3.5e-09 Score=110.21 Aligned_cols=119 Identities=18% Similarity=0.261 Sum_probs=95.4
Q ss_pred hccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhh
Q 013832 167 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET 246 (435)
Q Consensus 167 l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~ 246 (435)
++..+.+++|- .+++++.++.++.+|.++|.++++..+||+|. ++++|+||..|+.. . .. .
T Consensus 85 v~~VKv~eim~--~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~----~-~~---------~- 145 (475)
T TIGR01303 85 VAFVKSRDLVL--DTPITLAPHDTVSDAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLG----V-DR---------F- 145 (475)
T ss_pred Hhhcchhhccc--cCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhc----C-CC---------C-
Confidence 44556667763 36789999999999999999999999999984 68999999999731 0 00 0
Q ss_pred ccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832 247 HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV 326 (435)
Q Consensus 247 ~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l 326 (435)
-.+ .+ +|+.+++++.+++++.+|+++|.+++++.+||++. ++ +++|+||.+||++..
T Consensus 146 ~~V---~d--------------IMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~---~g---~LvGIIT~~DLl~~~ 202 (475)
T TIGR01303 146 TQV---RD--------------IMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA---DG---TLAGILTRTGALRAT 202 (475)
T ss_pred CCH---HH--------------HccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHH
Confidence 011 22 26788999999999999999999999999999962 45 799999999999865
Q ss_pred H
Q 013832 327 C 327 (435)
Q Consensus 327 ~ 327 (435)
.
T Consensus 203 ~ 203 (475)
T TIGR01303 203 I 203 (475)
T ss_pred h
Confidence 4
No 136
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.11 E-value=7.2e-10 Score=95.59 Aligned_cols=131 Identities=21% Similarity=0.305 Sum_probs=89.9
Q ss_pred CCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhcc--HHHH-HHH
Q 013832 179 SGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHT--ISAW-KEG 255 (435)
Q Consensus 179 s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~--i~~~-~e~ 255 (435)
|..+.+++++.++.+|.+.|.+++...+||+|+ .++++|+++..|+...+...... . ..+..... .+.. ...
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~~Gvi~~~dl~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~ 75 (135)
T cd04586 1 TTDVVTVSPETSVAEAARLMLDNHISGLPVVDD-DGRLVGIVSEGDLLRRAELGTER--R--RARWLDLLAGAEELAAAF 75 (135)
T ss_pred CCCCEEeCCCCCHHHHHHHHHHcCCCCceEECC-CCCEEEEeeHHHHHHHhcccCcc--h--hhhHHHHhcchHHHHHHH
Confidence 346788999999999999999999999999996 47999999999998644321100 0 00000000 0000 000
Q ss_pred HHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 256 KAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 256 ~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
. .... .....+|..++.++.+++++.+|+..|.+.+.+++||++ .| +++|++|..|+++
T Consensus 76 ~-~~~~--~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd----~g---~~~Gvit~~di~~ 134 (135)
T cd04586 76 V-RSHG--RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR----GG---RLVGIVSRADLLR 134 (135)
T ss_pred H-HhcC--CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec----CC---EEEEEEEhHhhhc
Confidence 0 0000 000012556788999999999999999999999999995 35 7999999999875
No 137
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.11 E-value=1.3e-09 Score=90.29 Aligned_cols=112 Identities=25% Similarity=0.406 Sum_probs=88.2
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++.+++++.++.+|.+.|.++++..+||+|.+ ++++|+++..|+...+.... ..+..++ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~---------~~~~~~v---~~------ 62 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPS---------LYDLVVA---SD------ 62 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhccc---------ccccEEH---HH------
Confidence 45689999999999999999999999999964 78999999999876442110 0011112 11
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
+|.+++.++.+++++.++++.|.+.+.+.+||++.+ .+ +++|++|..|+++
T Consensus 63 --------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~--~~---~~~Gvvt~~di~~ 113 (114)
T cd04613 63 --------IMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDD--PG---KLLGILSRSDLLS 113 (114)
T ss_pred --------hccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCC--CC---EEEEEEEhHHhhc
Confidence 155778899999999999999999999999999631 35 7999999999864
No 138
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.11 E-value=2.6e-09 Score=88.27 Aligned_cols=108 Identities=19% Similarity=0.326 Sum_probs=86.9
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++++++.+.++.+|.+.|.++++..+||.|. ++++|+++..|++........ . ..+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~----~----------~~v~~~----- 60 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLE----L----------AKVKDV----- 60 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhcccc----c----------cCHHHH-----
Confidence 4678899999999999999999999999995 799999999998765432110 0 011111
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
+..++.++.+++++.++++.|.+.+.+.+||++. .| +++|++|..|+++
T Consensus 61 ---------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~i~~~dl~~ 109 (110)
T cd04588 61 ---------MTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD---EG---RPVGIITRTDILR 109 (110)
T ss_pred ---------hcCCceEECCCCCHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEEhHHhhc
Confidence 4467889999999999999999999999999962 35 7999999999864
No 139
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.10 E-value=1.1e-09 Score=93.27 Aligned_cols=116 Identities=17% Similarity=0.262 Sum_probs=83.2
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHH--HHhccCCCCCChhhhhhccHHHHHHHHHh
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILIL--RELGNHGSNLTEEELETHTISAWKEGKAY 258 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il--~~~~~~~~~l~~e~l~~~~i~~~~e~~~~ 258 (435)
+++++..++++.+|++.|.++++..+||.|.+ ++++|+++..|+.... ......... ....++ .+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~-----~~~~~v---~~i--- 69 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGIS-----RSELTV---ADV--- 69 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCC-----chheEH---HHh---
Confidence 46789999999999999999999999999964 7999999999987521 111110000 000011 111
Q ss_pred hcccccCCCccCCCCceE--e----CCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 259 LNRQIDSHGKAFPRPLVY--A----GPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 259 ~~~~~~~~g~~~~~~~v~--v----~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
|.++... + .+++++.+|++.|.+++++.+||++++ .| +++|+||.+||++
T Consensus 70 -----------m~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~--~~---~~~G~it~~di~~ 125 (126)
T cd04640 70 -----------MTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDRE--HH---QIRGIISTSDIAR 125 (126)
T ss_pred -----------cCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECC--CC---EEEEEEeHHHHhh
Confidence 4333322 2 368999999999999999999999741 25 7999999999974
No 140
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.09 E-value=2.2e-09 Score=88.56 Aligned_cols=109 Identities=24% Similarity=0.464 Sum_probs=87.1
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
+++.++++.++.+|.+.|.++++..+||.|. ++++|+++..|+........ . ....+ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~-----~-----~~~~~---~~------ 60 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGR-----E-----ATVLV---GD------ 60 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCc-----c-----cccCH---HH------
Confidence 4678999999999999999999999999996 79999999999875432110 0 00011 11
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
.|..++.++.+++++.++++.|.+++.+.+||++. ++ +++|++|..||++
T Consensus 61 --------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~it~~di~~ 110 (111)
T cd04612 61 --------VMTRDPVTASPDETLRDALKRMAERDIGRLPVVDD---SG---RLVGIVSRSDLLR 110 (111)
T ss_pred --------hccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC---CC---CEEEEEEHHHhhh
Confidence 15577899999999999999999999999999963 35 7999999999975
No 141
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.09 E-value=2.1e-09 Score=89.64 Aligned_cols=110 Identities=18% Similarity=0.354 Sum_probs=83.9
Q ss_pred CeEEeCCCccHHHHHHHHHHCC-CceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhh
Q 013832 181 KVVALDIDLPVKQAFHILYEQG-ISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL 259 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~-i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~ 259 (435)
++++++.+.++.+|.+.|.+++ ...+||.|. ++++|+++..|+...+..... ...-.+ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~---------~~~~~i---~~----- 62 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKD---------LSDLPI---GE----- 62 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCC---------ccccCH---HH-----
Confidence 4567899999999999999888 677777773 799999999999765432100 000011 11
Q ss_pred cccccCCCccCCCCceEeCCC--CCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 260 NRQIDSHGKAFPRPLVYAGPN--DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 260 ~~~~~~~g~~~~~~~v~v~~~--~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
.|..+++++.++ +++.+|+++|.+++.+.+||++. +| +++|++|.+|+++
T Consensus 63 ---------~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~---~~---~~~Gvit~~dl~~ 114 (115)
T cd04620 63 ---------VMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD---QG---QLIGLVTAESIRQ 114 (115)
T ss_pred ---------hcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC---CC---CEEEEEEhHHhhc
Confidence 145677888877 78999999999999999999963 35 7999999999975
No 142
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.08 E-value=3.5e-09 Score=87.76 Aligned_cols=111 Identities=15% Similarity=0.304 Sum_probs=86.6
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
+++++.++.++.+|++.|.+++...+||.|. ++++|+++..|++..+...... . ...++ .+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~--~------~~~~v---~~------ 62 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLD--P------ESTLV---ER------ 62 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCC--c------CcCCH---HH------
Confidence 5678899999999999999999999999985 8999999999987433211100 0 00111 11
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
+|..++.++.+++++.+|++.|.+++.+.+||++. ++ +++|++|..||+.
T Consensus 63 --------i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~---~~---~~~Gvvs~~dl~~ 112 (113)
T cd04587 63 --------VMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK---SG---QVVGLLDVTKLTH 112 (113)
T ss_pred --------hcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC---CC---CEEEEEEHHHhcc
Confidence 14567889999999999999999999999999963 35 7999999999863
No 143
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.08 E-value=3e-09 Score=88.15 Aligned_cols=110 Identities=19% Similarity=0.395 Sum_probs=87.5
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++.+++.+.++.+|.+.|.+++...+||.|.+ ++++|+++..|++..+..... . . -.+ .+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~----~-----~-~~v---~~------ 61 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGID----L-----D-TPV---SE------ 61 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCC----C-----c-cCH---HH------
Confidence 45678999999999999999999999999964 799999999998765432110 0 0 011 11
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
+|..++.++.+++++.++++.|.+++...+||++. .| +++|++|.+++++
T Consensus 62 --------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~g---~~~Gilt~~dl~~ 111 (112)
T cd04624 62 --------IMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK---GG---ELVGVISIRDLVR 111 (112)
T ss_pred --------hccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcC---CC---cEEEEEEHHHhcc
Confidence 14567889999999999999999999999999963 35 7999999999864
No 144
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.08 E-value=4.2e-09 Score=87.24 Aligned_cols=109 Identities=17% Similarity=0.355 Sum_probs=84.2
Q ss_pred eEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhcc
Q 013832 182 VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNR 261 (435)
Q Consensus 182 vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~~ 261 (435)
+.++.++.++.+|.+.|.+++...++|.+. ++++|+++..|+...+...... ....++ .+.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~--------~~~~~v---~~~------ 63 (112)
T cd04625 3 IYTVAPETLLSEAVATMAEQDLGSLVVMER--GELVGLLTFREVLQAMAQHGAG--------VLDTTV---RAI------ 63 (112)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHHHHHHHhcCCc--------hhcCCH---HHH------
Confidence 567899999999999999888877776653 7999999999998755421100 000111 111
Q ss_pred cccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 262 QIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 262 ~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
|..++.++.+++++.+|+++|.+++..++||++ .+ +++|++|.+||++
T Consensus 64 --------~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~----~~---~~~Gvvt~~dl~~ 111 (112)
T cd04625 64 --------MNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD----GG---TLLGVISFHDVAK 111 (112)
T ss_pred --------hCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE----CC---EEEEEEEHHHhhc
Confidence 456678899999999999999999999999995 25 7999999999975
No 145
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.08 E-value=3.5e-09 Score=87.41 Aligned_cols=109 Identities=19% Similarity=0.319 Sum_probs=87.1
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++.+++++.++.+|++.|.+++...+||.|. ++++|+++..|+......... ....+ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~----------~~~~v---~~------ 60 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPD----------LQTPV---GE------ 60 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCC----------CCcCH---HH------
Confidence 4678899999999999999999999999986 799999999998765532110 00111 11
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
.|.++++++.+++++.++++.|.+.+.+.+||++. .| +++|++|.++|++
T Consensus 61 --------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~---~~---~~~Gvi~~~di~~ 110 (111)
T cd04611 61 --------VMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDD---DG---ELLGLLSQTDLLQ 110 (111)
T ss_pred --------hcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECC---CC---cEEEEEEhHHhhc
Confidence 14567889999999999999999999999999963 35 7999999999974
No 146
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.07 E-value=1.8e-09 Score=90.96 Aligned_cols=119 Identities=17% Similarity=0.350 Sum_probs=87.6
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCCh-hhhhhccHHHHHHHHHhh
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYL 259 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~-e~l~~~~i~~~~e~~~~~ 259 (435)
+++++.++.++.+|++.|.+++...+||+|. .++++|+++..|++...... ........ ...... .+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~-~~~~~~~~~~~~~~~---~~~~----- 71 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK-AGELIGIITRRDIIRAGSVR-TSVEDQQRTQTKASP---TVEK----- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECC-CCcEEEEEEcHHHHhhcccc-ccccchhhhhhhccC---cHHH-----
Confidence 4678999999999999999999999999986 48999999999987532100 00000000 000000 0111
Q ss_pred cccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
+|.++++.+.+++++.++++.|.+++.+.+||++. .| +++|++|..++++
T Consensus 72 ---------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~---~g---~~~Gvit~~dl~~ 121 (122)
T cd04635 72 ---------IMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNE---KD---QLVGIVDRHDVLK 121 (122)
T ss_pred ---------HhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC---CC---cEEEEEEhHHhhc
Confidence 24567889999999999999999999999999963 35 7999999999975
No 147
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.07 E-value=2.5e-09 Score=88.31 Aligned_cols=105 Identities=23% Similarity=0.318 Sum_probs=85.8
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++++++++.++.+|...|.+++...+||+|. .++++|+++..|+.... . . ..+ .+.
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~----~---~--------~~v---~~~----- 58 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE-KNKVVGIVTSKDVAGKD----P---D--------TTI---EKV----- 58 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECC-CCeEEEEecHHHHhccc----c---c--------ccH---HHH-----
Confidence 4678999999999999999999999999996 58999999999985310 0 0 011 221
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
|..++.++.+++++.+|++.|.+++.+.+||++ ++| +++|++|..++++
T Consensus 59 ---------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~~~---~~~G~it~~di~~ 107 (108)
T cd04596 59 ---------MTKNPITVNPKTSVASVAHMMIWEGIEMLPVVD---DNK---KLLGIISRQDVLK 107 (108)
T ss_pred ---------hcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEc---CCC---CEEEEEEHHHhhc
Confidence 446788999999999999999999999999996 245 7999999999974
No 148
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.07 E-value=2.5e-09 Score=88.47 Aligned_cols=100 Identities=20% Similarity=0.307 Sum_probs=85.8
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCC--CCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHh
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFS--KARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAY 258 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~--~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~ 258 (435)
.+..++++.++.+|...|.+++...+||+|+. .++++|+++..|+......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~--------------------------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN--------------------------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------------
Confidence 46788999999999999999999999999963 4899999999998653321
Q ss_pred hcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 259 LNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 259 ~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
. |.+++.++.+++++.++++.|.+++.+.+||++ +| +++|++|.+|+++
T Consensus 56 ~----------m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~----~~---~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 Y----------IDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD----EG---RLVGIITRKDLLK 104 (105)
T ss_pred h----------ccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE----CC---eEEEEEEhhhhhc
Confidence 1 556788999999999999999999999999994 35 7999999999975
No 149
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.07 E-value=2.1e-09 Score=89.15 Aligned_cols=111 Identities=16% Similarity=0.326 Sum_probs=87.0
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++.++.++.++.+|.+.|.+.+...+||.|.+ ++++|+++..|+...+..... ....++ .+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~---------~~~~~v---~~------ 63 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLD---------ILTLPV---AD------ 63 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCc---------cccCCH---HH------
Confidence 34568899999999999999999999999964 799999999998875542111 000011 11
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
.|..+..++.+++++.+++++|.+++.+.+||++. .+ +++|++|..||++
T Consensus 64 --------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~iG~it~~di~~ 113 (114)
T cd04604 64 --------VMTRNPKTIDPDALAAEALELMEENKITALPVVDD---NG---RPVGVLHIHDLLR 113 (114)
T ss_pred --------hhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---CEEEEEEHHHhhc
Confidence 14566788999999999999999999999999963 35 7999999999974
No 150
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.06 E-value=6.9e-09 Score=85.95 Aligned_cols=110 Identities=21% Similarity=0.375 Sum_probs=86.3
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
+++++.++.++.+|++.|.+++...+||+|+ ++++|+++..|+...+....... ...++ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~--------~~~~~---~~------ 62 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKP--------REVPV---GE------ 62 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCc--------ccCCH---HH------
Confidence 4678899999999999999999999999995 49999999999887543211000 00011 11
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
+|..++.++.+++++.++++.|.+++.+.+||++. + +++|++|.+|+++
T Consensus 63 --------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~---~~~Gvi~~~di~~ 111 (112)
T cd04802 63 --------VMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD----D---ELVGIVTTTDIVM 111 (112)
T ss_pred --------hcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC----C---EEEEEEEhhhhhc
Confidence 14567888999999999999999999999999962 3 6999999999864
No 151
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.06 E-value=4e-09 Score=86.70 Aligned_cols=106 Identities=16% Similarity=0.357 Sum_probs=85.9
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++.+++++.++.+|...|.++++..+||.|.. ++++|+++..|+..... ... .+ .+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~----~~~----------~v---~~------ 58 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYK----EAK----------SL---ED------ 58 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhh----cCC----------cH---hH------
Confidence 45678999999999999999999999999964 79999999999865321 000 11 11
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
.|...+.++.+++++.+|+..|.+.+.+.+||++. +| +++|++|.+++++
T Consensus 59 --------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~---~g---~~~Gvit~~~l~~ 108 (109)
T cd04583 59 --------IMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDE---DG---KLVGLITRSSLVD 108 (109)
T ss_pred --------hhcCCceEECCCCcHHHHHHHHHHcCCceeeEECC---CC---eEEEEEehHHhhc
Confidence 14567788999999999999999999999999963 45 7999999999864
No 152
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.05 E-value=4.7e-09 Score=88.10 Aligned_cols=119 Identities=19% Similarity=0.309 Sum_probs=87.9
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++.+++.+.++.+|...|.+.+...+||+|.+ ++++|+++..|+......................++ .+
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v---~~------ 71 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPV---KE------ 71 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCH---HH------
Confidence 46788999999999999999999999999974 899999999998765432211000000000011111 11
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
.|..+++++.+++++.++++.|.+.+.+.+||++ . + +++|++|.++|++
T Consensus 72 --------~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~---~-~---~~~Gvv~~~di~~ 120 (121)
T cd04584 72 --------IMTKDVITVHPLDTVEEAALLMREHRIGCLPVVE---D-G---RLVGIITETDLLR 120 (121)
T ss_pred --------HhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEee---C-C---EEEEEEEHHHhhc
Confidence 1456788999999999999999999999999996 2 5 7999999999874
No 153
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.05 E-value=6.7e-09 Score=86.05 Aligned_cols=111 Identities=23% Similarity=0.457 Sum_probs=85.7
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++++++++.++.+|++.|.+++...+||.|. ++++|+++..|++..+.. .... .....+ .+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~--~~~~------~~~~~~---~~------ 62 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVA--EGRD------PDTTTV---GD------ 62 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhh--ccCC------cccCCH---HH------
Confidence 4678999999999999999999999999995 899999999998621110 1000 000011 11
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
+|...+.++.+++++.++++.|.+++.+++||++. .+ +++|++|..|+++
T Consensus 63 --------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~it~~di~~ 112 (113)
T cd04622 63 --------VMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD---DG---RLVGIVSLGDLAR 112 (113)
T ss_pred --------hccCCccEECCCCCHHHHHHHHHHcCCCeeeEECC---CC---cEEEEEEHHHhhc
Confidence 14567788999999999999999999999999962 35 7999999999964
No 154
>PRK11573 hypothetical protein; Provisional
Probab=99.03 E-value=6e-09 Score=107.17 Aligned_cols=132 Identities=14% Similarity=0.182 Sum_probs=108.2
Q ss_pred hccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhh
Q 013832 167 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET 246 (435)
Q Consensus 167 l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~ 246 (435)
|++.++.|+|..-.++++++.+.|+.++.+.+.+++...+||++.+.++++|++...|++..+.. . ...
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~---~-~~~------- 252 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE---K-KEF------- 252 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhc---c-CcC-------
Confidence 46789999999999999999999999999999999999999998777899999999999864321 1 011
Q ss_pred ccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832 247 HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV 326 (435)
Q Consensus 247 ~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l 326 (435)
.+..+.+ ..+++..++++.++.++++.|.+++.|...|+| +.| ...||||..||++.+
T Consensus 253 -~~~~l~~---------------~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD---EyG---~~~GiVTleDilEei 310 (413)
T PRK11573 253 -TKENMLR---------------AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD---EYG---DIQGLVTVEDILEEI 310 (413)
T ss_pred -CHHHHHh---------------hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe---cCC---CeEEEeeHHHHHHHH
Confidence 1111111 136788999999999999999999999999996 345 599999999999999
Q ss_pred Hhhhc
Q 013832 327 CRYFR 331 (435)
Q Consensus 327 ~~~~~ 331 (435)
.....
T Consensus 311 vGei~ 315 (413)
T PRK11573 311 VGDFT 315 (413)
T ss_pred hCCCC
Confidence 86543
No 155
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.03 E-value=2.1e-09 Score=93.24 Aligned_cols=113 Identities=17% Similarity=0.182 Sum_probs=79.4
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCC-Cccccc---ccccccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS-SLPILK---LPICAIP 348 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~-~~~~~~---~~v~~l~ 348 (435)
.++++.+++++.+|++.|.+++++.+||+|+ .| +++|++|..|+++++......... ....+. ..+.+++
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~---~g---~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 75 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS---DD---FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVC 75 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHh
Confidence 4678999999999999999999999999963 35 799999999999987643211000 000000 0111121
Q ss_pred CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC
Q 013832 349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN 394 (435)
Q Consensus 349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~ 394 (435)
... .+.+.|.++++++.+++++.+|+++|.+++++++||||++
T Consensus 76 ~~~---~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 76 TKG---ISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred hhh---hhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 100 0112234678999999999999999999999999999864
No 156
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.02 E-value=4e-09 Score=86.75 Aligned_cols=109 Identities=24% Similarity=0.378 Sum_probs=83.2
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
.+++++.+.++.+|.+.|.++++..+||+|. ++++|++|..|+...+...... . ...+ .+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~--------~-~~~~---~~------ 61 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAK--------F-SLPV---RE------ 61 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccc--------c-CcCH---HH------
Confidence 4678899999999999999999999999995 7999999999988755321110 0 0011 11
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC 325 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~ 325 (435)
+|.++++++.+++++.+|+++|.+ . +.+||++. .+ +++|++|.+||++|
T Consensus 62 --------~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~---~~---~~~Gvvt~~di~~~ 110 (110)
T cd04609 62 --------VMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDE---GG---KFVGIITRADLLKY 110 (110)
T ss_pred --------HhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEec---CC---eEEEEEeHHHhhcC
Confidence 145678889999999999998887 3 34788862 35 79999999999754
No 157
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.02 E-value=8.4e-09 Score=85.92 Aligned_cols=110 Identities=25% Similarity=0.523 Sum_probs=90.0
Q ss_pred CCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhh
Q 013832 180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL 259 (435)
Q Consensus 180 ~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~ 259 (435)
..++++.++.++.+|+..|.++++..+||.+. .+++|++|..|++..+........ .+ .+
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~----------~v---~~----- 66 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLL----------PV---KE----- 66 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccc----------cH---HH-----
Confidence 57889999999999999999999999999985 379999999999887654322110 01 11
Q ss_pred cccccCCCccCCCCceEeCCCCCHHHHHHHHHh-cCCcEEEEEecCCCCCCCCeEEEeeeHHhHH
Q 013832 260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILH-NEVATVPIIHSSSQDGSFPQLLHIASLSGIL 323 (435)
Q Consensus 260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~-~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl 323 (435)
+|.++++++.+++++.+|++.|.+ ++++++||++. +.+ +++|++|.+|++
T Consensus 67 ---------v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~--~~~---~lvGivt~~di~ 117 (117)
T COG0517 67 ---------VMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD--DGG---KLVGIITLSDIL 117 (117)
T ss_pred ---------hccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC--CCC---eEEEEEEHHHcC
Confidence 266789999999999999999999 79999999974 223 699999999873
No 158
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.02 E-value=1.8e-08 Score=105.81 Aligned_cols=132 Identities=12% Similarity=0.178 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCC--CCeEEEeeehHHHHHHHHH
Q 013832 154 ADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFS--KARFVGVLSASDFILILRE 231 (435)
Q Consensus 154 ~~~e~~~~~i~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~--~~~~vGilT~~D~i~il~~ 231 (435)
+..|..+..+++.++ .... | ..+++++++++|+.+|.++|.++++..+||+|.. .++++|+||..|+....
T Consensus 87 as~E~q~~~Irkvk~-~~~g--m--i~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-- 159 (505)
T PLN02274 87 NTAEEQAAIVRKAKS-RRVG--F--VSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-- 159 (505)
T ss_pred CCHHHHHHHHHHhhc-cccc--c--cCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc--
Confidence 345555566666653 2222 3 3578899999999999999999999999999863 37999999999985311
Q ss_pred hccCCCCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCC--ceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCC
Q 013832 232 LGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRP--LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGS 309 (435)
Q Consensus 232 ~~~~~~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~--~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~ 309 (435)
.. ..++ .++ |+++ ++++.+++++.+|+++|.++++..+||++. .+
T Consensus 160 -~~-----------~~~V---~eI--------------Mt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~---~g- 206 (505)
T PLN02274 160 -DR-----------ETKL---SEV--------------MTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE---DG- 206 (505)
T ss_pred -cc-----------CCcH---HHH--------------hccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC-
Confidence 00 0011 222 4444 889999999999999999999999999963 35
Q ss_pred CCeEEEeeeHHhHHHHHH
Q 013832 310 FPQLLHIASLSGILKCVC 327 (435)
Q Consensus 310 ~~~lvGiiT~~dIl~~l~ 327 (435)
+++|+||.+||++.+.
T Consensus 207 --~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 207 --ELVDLVTRTDVKRVKG 222 (505)
T ss_pred --eEEEEEEHHHHHHHhh
Confidence 7999999999998765
No 159
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.02 E-value=5.2e-09 Score=90.82 Aligned_cols=116 Identities=15% Similarity=0.135 Sum_probs=78.9
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
+++++.++.++.+|++.|.++++..+||+|++ ++++|+||..|++..+............+-+.... ....+.+...
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~- 78 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNT-CLVSSVCTKG- 78 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhccccc-ccHHHHhhhh-
Confidence 46789999999999999999999999999964 79999999999988664321110000000000000 0001111100
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEec
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHS 303 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~ 303 (435)
..-..|..+++++.+++++.+|++.|.+++++.+||+++
T Consensus 79 ----~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 79 ----ISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred ----hhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 000014578899999999999999999999999999974
No 160
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.00 E-value=7e-09 Score=86.58 Aligned_cols=107 Identities=18% Similarity=0.309 Sum_probs=82.6
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCC--CCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHh
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFS--KARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAY 258 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~--~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~ 258 (435)
+++++..+.++.+|.+.|.++++..+||+|.. .++++|+++..|+... . ... ..+ ++.
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~-~---~~~----------~~v---~~~--- 62 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL-T---DSE----------TPL---SEV--- 62 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhh-h---ccC----------CCH---HHh---
Confidence 45688999999999999999999999999962 4799999999997531 1 000 011 221
Q ss_pred hcccccCCCccCCCCceEeCC--CCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 259 LNRQIDSHGKAFPRPLVYAGP--NDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 259 ~~~~~~~~g~~~~~~~v~v~~--~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
|.....++.+ ++++.++++.|.+++...+||+++ .+ +++|+||.++|++
T Consensus 63 -----------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~---~~---~~~Gvit~~di~~ 113 (114)
T cd04602 63 -----------MTPREVLVVAPTGITLEEANEILRESKKGKLPIVND---DG---ELVALVTRSDLKK 113 (114)
T ss_pred -----------cCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECC---CC---eEEEEEEHHHhhc
Confidence 4444555544 999999999999999999999962 45 7999999999864
No 161
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.00 E-value=9e-09 Score=84.10 Aligned_cols=102 Identities=17% Similarity=0.317 Sum_probs=83.9
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++++++.++++.+|.+.|.+++...+||+|. ++++|+++..|+.... .. -.+ .+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~Giv~~~~l~~~~----~~-----------~~~---~~~----- 56 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED--GKLVGIITSRDVRRAH----PN-----------RLV---ADA----- 56 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEehHHhhccc----cc-----------CCH---HHH-----
Confidence 4567899999999999999999999999983 7999999999986421 00 011 111
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGIL 323 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl 323 (435)
|..++.++.+++++.+|++.|.+++...+||++ + + +++|++|.++++
T Consensus 57 ---------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~G~it~~~l~ 103 (105)
T cd04599 57 ---------MTREVVTISPEASLLEAKRLMEEKKIERLPVLR---E-R---KLVGIITKGTIA 103 (105)
T ss_pred ---------ccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE---C-C---EEEEEEEHHHhc
Confidence 446788999999999999999999999999996 2 5 899999999986
No 162
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.00 E-value=9e-09 Score=84.52 Aligned_cols=101 Identities=19% Similarity=0.302 Sum_probs=82.9
Q ss_pred eEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhcc
Q 013832 182 VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNR 261 (435)
Q Consensus 182 vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~~ 261 (435)
=+++.++.++.+|.+.|.+++...+||+|. ++++|+++..|+.... . . .+ .+.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~----~--~----------~~---~~~------ 55 (104)
T cd04594 3 DIKVKDYDKVYEAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENAT----Y--G----------DV---VDY------ 55 (104)
T ss_pred ceEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhc----c--c----------ch---hhh------
Confidence 357899999999999999999999999995 8999999999986410 0 0 01 111
Q ss_pred cccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 262 QIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 262 ~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
|.....++.++.++.+|+..|.+++.+.+||++ +| +++|++|.+|++.
T Consensus 56 --------~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~----~~---~~iGvit~~dl~~ 103 (104)
T cd04594 56 --------IVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD----DG---KFKGIVTLDSILD 103 (104)
T ss_pred --------hhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE----CC---EEEEEEEHHHhhc
Confidence 445678899999999999999999999999995 25 7999999999864
No 163
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.99 E-value=5e-09 Score=109.35 Aligned_cols=114 Identities=12% Similarity=0.195 Sum_probs=90.1
Q ss_pred cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832 269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP 348 (435)
Q Consensus 269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~ 348 (435)
+|.++++++.+++++.+|++.|.+++++.+||++. ++ +++|+||..|+++.+..... ....++.++
T Consensus 340 im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~-------~~~~~v~~i- 405 (454)
T TIGR01137 340 LHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE---AG---KVLGSVTLRELLSALFAGKA-------NPDDAVSKV- 405 (454)
T ss_pred hCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHHhccCC-------CcCCCHHHh-
Confidence 47788999999999999999999999999999963 35 79999999999886653210 012334443
Q ss_pred CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 013832 349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 410 (435)
Q Consensus 349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~ 410 (435)
|.+++.++++++++.+|+++|.+++ .|||+++|+++|+||++||+..+
T Consensus 406 -----------m~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 406 -----------MSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred -----------cCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 3357789999999999999998754 35666679999999999999764
No 164
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.99 E-value=1.3e-08 Score=83.14 Aligned_cols=111 Identities=30% Similarity=0.511 Sum_probs=88.4
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++.+++.+.++.+|.+.|.+++...+||+|++ ++++|+++..|++..+...... .. . . ..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~--~~-----~--~---~~~------ 62 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLD--PL-----V--T---VGD------ 62 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCC--cc-----c--c---HHH------
Confidence 46788999999999999999999999999964 7999999999998755432211 00 0 0 111
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
.|..++..+.+++++.+++..|.+.+.+.+||++. .+ +++|+++..++++
T Consensus 63 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~i~~~dl~~ 112 (113)
T cd02205 63 --------VMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD---EG---RLVGIVTRSDILR 112 (113)
T ss_pred --------HhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEEHHHhhc
Confidence 14567888999999999999999999999999963 35 7999999999875
No 165
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.98 E-value=7.9e-10 Score=80.93 Aligned_cols=53 Identities=28% Similarity=0.468 Sum_probs=49.2
Q ss_pred CCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 013832 359 PNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 411 (435)
Q Consensus 359 ~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~ 411 (435)
.|.++++++++++++.+|++.|.+++++++||+|++|+++|+||++||++.+.
T Consensus 4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 34568999999999999999999999999999999999999999999998764
No 166
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.98 E-value=1.4e-08 Score=88.66 Aligned_cols=133 Identities=23% Similarity=0.417 Sum_probs=91.0
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCC-------CChhhhhhccHHHHH
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSN-------LTEEELETHTISAWK 253 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~-------l~~e~l~~~~i~~~~ 253 (435)
++++++.++++.+|++.|.++++..+||+|+ ++++|++|..|+...+......... .....+. .+..|.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 77 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLR--EFINWE 77 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccch--heeehH
Confidence 4678999999999999999999999999995 7999999999998766432210000 0000000 011121
Q ss_pred HHHHhhccccc-CCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 254 EGKAYLNRQID-SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 254 e~~~~~~~~~~-~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
+.......... ....+|..++.++.+++++.+|+..|.+.+.+.+||++. + +++|++|.+|+++
T Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~----~---~~~Gvvt~~dl~~ 142 (143)
T cd04634 78 ETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED----G---RLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEEHHHhhc
Confidence 11110000000 001135678899999999999999999999999999962 5 7999999999863
No 167
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.97 E-value=1.4e-08 Score=83.29 Aligned_cols=105 Identities=23% Similarity=0.424 Sum_probs=85.1
Q ss_pred CCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhh
Q 013832 180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL 259 (435)
Q Consensus 180 ~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~ 259 (435)
.++++++.+.++.+|.+.|.+++...+||.|. ++++|+++..|++.. .. . . .+.+.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~-----~~--~--------~---~~~~~---- 57 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGK-----DP--D--------E---TVEEI---- 57 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhcc-----Cc--c--------c---cHHHh----
Confidence 35678999999999999999999889999984 799999999998631 00 0 0 11221
Q ss_pred cccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
|..++.++.+++++.+|++.|.+++.+++||++. +| +++|+++..+|++
T Consensus 58 ----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~g---~~~Gvi~~~di~~ 106 (107)
T cd04610 58 ----------MSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE---NN---NLVGIITNTDVIR 106 (107)
T ss_pred ----------CCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC---CC---eEEEEEEHHHhhc
Confidence 4566788999999999999999999999999963 45 7999999999974
No 168
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.97 E-value=6.3e-09 Score=86.05 Aligned_cols=102 Identities=20% Similarity=0.396 Sum_probs=81.1
Q ss_pred eCCCccHHHHHHHHHHCC-----CceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhh
Q 013832 185 LDIDLPVKQAFHILYEQG-----ISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL 259 (435)
Q Consensus 185 ld~~~~v~eA~~~l~~~~-----i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~ 259 (435)
+.++.++.+|.+.|.+++ +..+||+|++ ++++|+++..|++.. . . ..++ .+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~-----~--~--------~~~v---~~~---- 58 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLA-----D--P--------DTPV---SDI---- 58 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcC-----C--C--------cchH---HHH----
Confidence 578899999999999877 5789999864 799999999988631 0 0 0011 221
Q ss_pred cccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832 260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC 325 (435)
Q Consensus 260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~ 325 (435)
+..++..+.+++++.++++.|.+++.+.+||+++ ++ +++|++|..++++.
T Consensus 59 ----------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~dll~~ 108 (109)
T cd04606 59 ----------MDTDVISVSADDDQEEVARLFEKYDLLALPVVDE---EG---RLVGIITVDDVIDV 108 (109)
T ss_pred ----------hCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC---CC---cEEEEEEhHHhhhh
Confidence 4466889999999999999999999999999963 35 79999999999864
No 169
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.96 E-value=1e-08 Score=107.42 Aligned_cols=107 Identities=17% Similarity=0.267 Sum_probs=86.6
Q ss_pred EEeCCCccHHHHHHHHHHCCCceeeeeeCC--CCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 183 VALDIDLPVKQAFHILYEQGISMAPLWDFS--KARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 183 i~ld~~~~v~eA~~~l~~~~i~s~PV~D~~--~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
.+++++.|+.+|.+.|.++++..+||+|.. +++++|+||..|+... ... ...++ .++
T Consensus 108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~----~~~---------~~~~V---~dI----- 166 (502)
T PRK07107 108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS----RMS---------LDTKV---KDF----- 166 (502)
T ss_pred CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc----ccC---------CCCCH---HHH-----
Confidence 488999999999999999999999999962 4799999999997421 000 00112 222
Q ss_pred ccccCCCccCCC--CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832 261 RQIDSHGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC 325 (435)
Q Consensus 261 ~~~~~~g~~~~~--~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~ 325 (435)
|+. +++++.+++++.+|+++|.++++..+||+|. ++ +++|+||.+||++.
T Consensus 167 ---------Mt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~---~g---~LvGIIT~~Dilk~ 218 (502)
T PRK07107 167 ---------MTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDK---NG---NLVYLVFRKDYDSH 218 (502)
T ss_pred ---------hCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEhHHHHhc
Confidence 443 7899999999999999999999999999962 35 79999999999874
No 170
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.95 E-value=1.6e-08 Score=83.10 Aligned_cols=104 Identities=23% Similarity=0.417 Sum_probs=84.0
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
+++++.++.++.+++..|.+.+...+||++. ++ +++|+++..++++.. . ..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~g~v~~~~l~~~~----~---------~~~~~~~----- 57 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKK---SG---ELVGIITRKDLLRNP----E---------EEQLALL----- 57 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEHHHHHhcc----c---------cchHHHH-----
Confidence 4578889999999999999999999999963 25 799999999996410 0 0122222
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
+.++..++.+++++.+|+++|.+++.+.+||+|+ |+++|+|+..|++.
T Consensus 58 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 58 -------MTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred -------hcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 2246778999999999999999999999999985 79999999999874
No 171
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.95 E-value=7e-09 Score=106.66 Aligned_cols=128 Identities=16% Similarity=0.287 Sum_probs=105.2
Q ss_pred HHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhc-----CCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhh
Q 013832 256 KAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN-----EVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF 330 (435)
Q Consensus 256 ~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~-----~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~ 330 (435)
....++..+..|..|+..++++.++.|+.+|+.++++. .+..+.|+|. .+ +++|+++.++++..
T Consensus 124 ~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~---~~---~L~Gvvsl~~Ll~a----- 192 (451)
T COG2239 124 RQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE---KG---KLLGVVSLRDLLTA----- 192 (451)
T ss_pred HHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECC---cc---ceEEEeeHHHHhcC-----
Confidence 33455667788999999999999999999999999843 5788999973 44 79999999999621
Q ss_pred cccCCCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 013832 331 RHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 410 (435)
Q Consensus 331 ~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~ 410 (435)
.....++++ |.+.++++.+++...++.+++.+++.-++||||++++++|+||..|++..+
T Consensus 193 --------~~~~~i~~i------------m~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi 252 (451)
T COG2239 193 --------EPDELLKDL------------MEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVI 252 (451)
T ss_pred --------CcHhHHHHH------------hcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHH
Confidence 012344444 345688999999999999999999999999999999999999999999987
Q ss_pred hhcc
Q 013832 411 KDKA 414 (435)
Q Consensus 411 ~~~~ 414 (435)
...+
T Consensus 253 ~eEa 256 (451)
T COG2239 253 EEEA 256 (451)
T ss_pred HHHH
Confidence 7653
No 172
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.93 E-value=1.2e-08 Score=83.95 Aligned_cols=106 Identities=18% Similarity=0.359 Sum_probs=82.4
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++++++.+.++.+|.+.|.+++...+||.|.+ ++++|+++..|+.... . .. .++ .+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~----~--~~--------~~v---~~~----- 59 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFET----D--LD--------KPV---SEV----- 59 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeecc----c--CC--------CCH---HHh-----
Confidence 46788999999999999999999999999964 8999999999874210 0 00 011 111
Q ss_pred ccccCCCccCCCCceEeCC-CCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGP-NDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~-~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
|...+..+.+ ++++.+|++.|.+.+.+.+||+++ ++ +++|++|.+|+++
T Consensus 60 ---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvi~~~dil~ 109 (110)
T cd04601 60 ---------MTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDD---EG---KLKGLITVKDIEK 109 (110)
T ss_pred ---------cccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC---CC---CEEEEEEhhhhhc
Confidence 3344455566 999999999999999999999963 35 7999999999974
No 173
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.91 E-value=3e-08 Score=83.05 Aligned_cols=113 Identities=15% Similarity=0.215 Sum_probs=84.2
Q ss_pred CeEEeCCCccHHHHHHHHHHCC-CceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhh
Q 013832 181 KVVALDIDLPVKQAFHILYEQG-ISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL 259 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~-i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~ 259 (435)
++.++.+++++.+|++.|.+++ +..+||+|+ ++++|+++..|+..++..... .+.....++ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~------~~~~~~~~v---~~----- 65 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYG------RALYGKKPV---SE----- 65 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhh------HHHHcCCcH---HH-----
Confidence 3557889999999999999887 899999996 899999999998765432100 000111111 11
Q ss_pred cccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCc---EEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVA---TVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~---~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
+|..++.++.+++++.+|+..|.+++.. ..||++. .| +++|+||..++++
T Consensus 66 ---------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~---~~---~~~Gvvs~~di~~ 118 (119)
T cd04598 66 ---------VMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE---EG---RYLGIGTVKDLLR 118 (119)
T ss_pred ---------hcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee---CC---eEEEEEEHHHHhc
Confidence 2567888999999999999999988864 4467753 35 7999999999864
No 174
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.90 E-value=2.5e-08 Score=103.76 Aligned_cols=110 Identities=15% Similarity=0.377 Sum_probs=90.4
Q ss_pred CCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCC--CeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHH
Q 013832 180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSK--ARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKA 257 (435)
Q Consensus 180 ~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~--~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~ 257 (435)
.++++++++.|+.+|.+.|.++++..+||+|... ++++|+||..|+.... .. ..++ ++.
T Consensus 88 ~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~----~~----------~~~V---~dv-- 148 (450)
T TIGR01302 88 SDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK----DK----------GKPV---SEV-- 148 (450)
T ss_pred cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh----cC----------CCCH---HHh--
Confidence 3788999999999999999999999999999643 6999999999985311 00 0112 221
Q ss_pred hhcccccCCCccCC-CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832 258 YLNRQIDSHGKAFP-RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV 326 (435)
Q Consensus 258 ~~~~~~~~~g~~~~-~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l 326 (435)
|. .+++++.+++++.+|++.|.+++.+.+||+| +.| +++|+||..||++.+
T Consensus 149 ------------m~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVD---e~G---~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 149 ------------MTREEVITVPEGIDLEEALKVLHEHRIEKLPVVD---KNG---ELVGLITMKDIVKRR 200 (450)
T ss_pred ------------hCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEc---CCC---cEEEEEEhHHhhhcc
Confidence 45 4889999999999999999999999999996 345 799999999999875
No 175
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.85 E-value=2.2e-08 Score=97.09 Aligned_cols=114 Identities=12% Similarity=0.162 Sum_probs=88.5
Q ss_pred CceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccH
Q 013832 170 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTI 249 (435)
Q Consensus 170 ~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i 249 (435)
.++.++|... .+.++.++.++.+|.+.|.+.++..+||+|++ ++++|+++..|+...+... . .. .-++
T Consensus 155 ~~v~~im~~~-~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~--~--~~------~~~v 222 (268)
T TIGR00393 155 VKVKDLMQTT-DLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGG--G--SL------KSEV 222 (268)
T ss_pred hhHHHHhCCC-CCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcC--C--cc------cCcH
Confidence 4666777443 27789999999999999999999999999964 7999999999997754210 0 00 0011
Q ss_pred HHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeee
Q 013832 250 SAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIAS 318 (435)
Q Consensus 250 ~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT 318 (435)
++ +|.++++++.+++++.+|+++|.+++++.+||++ ++| +++|+|+
T Consensus 223 ---~~--------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~g---~l~GvI~ 268 (268)
T TIGR00393 223 ---RD--------------FMTLGPKTFKLDALLLEALEFLERRKITSLVVVD---DHN---KVLGVLH 268 (268)
T ss_pred ---HH--------------hCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEEC---CCC---eEEEEEC
Confidence 22 2567888999999999999999999999999996 245 7999985
No 176
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.85 E-value=8.2e-08 Score=100.78 Aligned_cols=110 Identities=16% Similarity=0.257 Sum_probs=89.1
Q ss_pred CCeEEeCCCccHHHHHHHHHHCCCceeeeeeCC--CCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHH
Q 013832 180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFS--KARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKA 257 (435)
Q Consensus 180 ~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~--~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~ 257 (435)
..+++++++.|+.+|.++|.++++..+||+|+. .++++|++|..|+.. . .. . ..++ ++.
T Consensus 104 ~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~-~----~~-~--------~~~V---~di-- 164 (495)
T PTZ00314 104 MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDF-V----KD-K--------STPV---SEV-- 164 (495)
T ss_pred cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhh-c----cc-C--------CCCH---HHh--
Confidence 356799999999999999999999999999964 379999999999752 1 10 0 0112 222
Q ss_pred hhcccccCCCccCCC--CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832 258 YLNRQIDSHGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV 326 (435)
Q Consensus 258 ~~~~~~~~~g~~~~~--~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l 326 (435)
|++ +++++.+++++.+|+++|.++++..+||+|. ++ +++|+||.+||++..
T Consensus 165 ------------Mt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~---~g---~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 165 ------------MTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND---NG---ELVALVSRSDLKKNR 217 (495)
T ss_pred ------------hCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEehHhhhcc
Confidence 444 7899999999999999999999999999963 34 799999999998764
No 177
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.84 E-value=2.5e-08 Score=96.91 Aligned_cols=110 Identities=15% Similarity=0.289 Sum_probs=92.5
Q ss_pred CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 351 (435)
Q Consensus 272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt 351 (435)
....++.+++++.+-.++-.+.+.+|+||+|. .- +++|++|.+|++.. .+ +.++..
T Consensus 198 ~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~---~~---kvvGvVt~rDv~~~-------~~------~t~ieK----- 253 (432)
T COG4109 198 EDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR---SM---KVVGVVTMRDVLDK-------KP------STTIEK----- 253 (432)
T ss_pred ccceeccccccHHHHHHHHHHcCCCccceecc---cc---eEEEEEEehhhhcC-------CC------CccHHH-----
Confidence 56778899999999999999999999999973 33 79999999999631 11 233333
Q ss_pred cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832 352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (435)
Q Consensus 352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~ 412 (435)
.|.++.+++.+.+++..+..+|.=.++.-+||||++.+|+|+|||+|++..+..
T Consensus 254 -------VMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 254 -------VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred -------HhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence 345788999999999999999999999999999999999999999999986653
No 178
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.84 E-value=5.1e-08 Score=101.76 Aligned_cols=127 Identities=17% Similarity=0.263 Sum_probs=97.2
Q ss_pred HHHHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCCh
Q 013832 162 RVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTE 241 (435)
Q Consensus 162 ~i~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~ 241 (435)
...++|+..++.++|. .+++++.+++++.+|++.|.++++..+||+|. .++++|+||..|+...+.......
T Consensus 327 ~~~~~l~~~~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~~----- 398 (454)
T TIGR01137 327 TVFDVLKNATVKDLHL--PAPVTVHPTETVGDAIEILREYGFDQLPVVTE-AGKVLGSVTLRELLSALFAGKANP----- 398 (454)
T ss_pred cHHHHhccCCHHHhCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhccCCCc-----
Confidence 3556688899999984 46889999999999999999999999999996 479999999999887553211000
Q ss_pred hhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHh
Q 013832 242 EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSG 321 (435)
Q Consensus 242 e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~d 321 (435)
..++ .+ +|.+++.++.+++++.+++..|.+++ .||+++ ++ +++|+||.+|
T Consensus 399 ----~~~v---~~--------------im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~---~g---~liGvvt~~d 448 (454)
T TIGR01137 399 ----DDAV---SK--------------VMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTE---EG---KPIGVVTKID 448 (454)
T ss_pred ----CCCH---HH--------------hcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEE---CC---EEEEEEEHHH
Confidence 0011 11 15677889999999999999998754 344542 35 7999999999
Q ss_pred HHHHH
Q 013832 322 ILKCV 326 (435)
Q Consensus 322 Il~~l 326 (435)
|++.+
T Consensus 449 ll~~l 453 (454)
T TIGR01137 449 LLSFL 453 (454)
T ss_pred HHHhh
Confidence 99875
No 179
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.82 E-value=1e-07 Score=78.16 Aligned_cols=104 Identities=22% Similarity=0.402 Sum_probs=84.2
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN 260 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~ 260 (435)
++++++.+.++.+|+..|.+++...+||+|.+ ++++|+++..|+... . ... .+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~-----~--~~~-----------~~~~~----- 57 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRN-----P--EEE-----------QLALL----- 57 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhc-----c--ccc-----------hHHHH-----
Confidence 56789999999999999999999999999965 799999999998631 0 000 11111
Q ss_pred ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832 261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324 (435)
Q Consensus 261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~ 324 (435)
|..++.++.+++++.+++..|.+++.+.+||++ .+ +++|++|..++++
T Consensus 58 ---------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd----~~---~~~G~it~~d~~~ 105 (106)
T cd04638 58 ---------MTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD----DG---KLVGIVTVADIVR 105 (106)
T ss_pred ---------hcCCCceECCCCCHHHHHHHHHHcCCCEEEEEE----CC---EEEEEEEHHHhhc
Confidence 346678899999999999999999999999996 24 7999999999864
No 180
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.76 E-value=1e-07 Score=98.84 Aligned_cols=130 Identities=18% Similarity=0.354 Sum_probs=108.1
Q ss_pred hccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhh
Q 013832 167 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET 246 (435)
Q Consensus 167 l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~ 246 (435)
|...++.++|..-..++.++.+.++.++...+.+++..++||++...+.++|++...|++..+..... ..
T Consensus 203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---~~------- 272 (429)
T COG1253 203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---DL------- 272 (429)
T ss_pred cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---cc-------
Confidence 46789999999999999999999999999999999999999999777899999999999875432210 00
Q ss_pred ccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832 247 HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV 326 (435)
Q Consensus 247 ~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l 326 (435)
.. + . .-++++.+++..++.++++.|.+.+.|...|+| +.| .+.|++|..||++.+
T Consensus 273 -~~---~---~------------~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD---EyG---~~~GlVTleDIiEeI 327 (429)
T COG1253 273 -DL---R---V------------LVRPPLFVPETLSLSDLLEEFREERTHMAIVVD---EYG---GVEGLVTLEDIIEEI 327 (429)
T ss_pred -ch---h---h------------cccCCeEecCCCcHHHHHHHHHHhCCeEEEEEE---cCC---CeEEEeEHHHHHHHH
Confidence 00 0 0 113788899999999999999999999999997 345 599999999999999
Q ss_pred Hhhhc
Q 013832 327 CRYFR 331 (435)
Q Consensus 327 ~~~~~ 331 (435)
.....
T Consensus 328 vGei~ 332 (429)
T COG1253 328 VGEIP 332 (429)
T ss_pred hCCCc
Confidence 87554
No 181
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.71 E-value=9.6e-08 Score=92.92 Aligned_cols=121 Identities=18% Similarity=0.273 Sum_probs=101.8
Q ss_pred CceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccH
Q 013832 170 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTI 249 (435)
Q Consensus 170 ~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i 249 (435)
.++.|+|.+..+.-.+..++++.+=..+-.+.|...+||+|. ..+++|++|.+|+++ +.++ -+|
T Consensus 188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~-~~kvvGvVt~rDv~~------~~~~---------t~i 251 (432)
T COG4109 188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR-SMKVVGVVTMRDVLD------KKPS---------TTI 251 (432)
T ss_pred eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecc-cceEEEEEEehhhhc------CCCC---------ccH
Confidence 478889988788889999999999999999999999999996 479999999999864 1111 012
Q ss_pred HHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhh
Q 013832 250 SAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRY 329 (435)
Q Consensus 250 ~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~ 329 (435)
.. .|+++++++.+.+++.-++.+|.=.++..+||+++ +. .++|++|++|+++.+...
T Consensus 252 eK-----------------VMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~---n~---~llGiitR~dvlk~lq~~ 308 (432)
T COG4109 252 EK-----------------VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS---NN---TLLGIITRQDVLKSLQMI 308 (432)
T ss_pred HH-----------------HhccCCeeecccchHHHHHHHHHhccceeeeEEcC---Cc---eEEEEEEHHHHHHHHHHh
Confidence 11 28899999999999999999999999999999974 23 799999999999988654
No 182
>PRK11573 hypothetical protein; Provisional
Probab=98.69 E-value=2.1e-07 Score=95.79 Aligned_cols=123 Identities=12% Similarity=0.125 Sum_probs=97.0
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832 270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV 349 (435)
Q Consensus 270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i 349 (435)
.+..+++++.++++.++++.+.+.+.+|+||.+++ .+ +++|++..+|++..+... +. .++..+
T Consensus 195 Pr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~-~D----~IiGiv~~kDll~~~~~~-~~---------~~~~~l-- 257 (413)
T PRK11573 195 PRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS-LD----DAISMLRVREAYRLMTEK-KE---------FTKENM-- 257 (413)
T ss_pred ccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC-CC----ceEEEEEHHHHHHHhhcc-Cc---------CCHHHH--
Confidence 35689999999999999999999999999999632 22 699999999998754321 00 011111
Q ss_pred cccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccccc
Q 013832 350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH 417 (435)
Q Consensus 350 gt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~~~ 417 (435)
... -+|+..|+++.++.++++.|.+++.+-.-|||+.|...|+||..||+.-+-...+.+
T Consensus 258 ~~~--------~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de 317 (413)
T PRK11573 258 LRA--------ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTS 317 (413)
T ss_pred Hhh--------ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcc
Confidence 011 147888999999999999999999998889999999999999999999777665544
No 183
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.66 E-value=1.2e-07 Score=74.41 Aligned_cols=69 Identities=30% Similarity=0.462 Sum_probs=57.1
Q ss_pred eEEEEecC-CCcEEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCC-ceEEEEEEECCeeecCCCCCeeeCC
Q 013832 27 PMRFVWPY-GGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPP-GYHQYKFCVDGEWRHDEHQPFISSE 97 (435)
Q Consensus 27 ~~~f~w~~-~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~-g~~~ykF~VDg~w~~d~~~~~~~d~ 97 (435)
.++|.+.. .+++|.|.++|++|....+|.+. ..|.|++.+++.. +.|.|+|.|||.|.+++.++...+.
T Consensus 5 ~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~--~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~ 75 (83)
T cd02688 5 GVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV--EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEG 75 (83)
T ss_pred cEEEEEECCCCCEEEEEEEECCCCCcccCEEC--CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcC
Confidence 46777754 47999999999997666899875 4699999999988 9999999999999999988555443
No 184
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.54 E-value=1.3e-06 Score=88.34 Aligned_cols=112 Identities=11% Similarity=0.217 Sum_probs=89.8
Q ss_pred CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832 273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 352 (435)
Q Consensus 273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~ 352 (435)
..+...++.+..+++..|...+...+.|++. .+ ++.|.++.+++.+++... .++.+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~------------~~~~~~----- 307 (363)
T TIGR01186 251 GPITKTADKGPRSALQLMRDERVDSLYVVDR---QN---KLVGVVDVESIKQARKKA------------QGLQDV----- 307 (363)
T ss_pred cceeecCCCCHHHHHHHHHhcCCceEEEEcC---CC---CEEEEEeHHHHHHHhhcC------------Cchhhh-----
Confidence 3345667889999999999999999999963 34 699999999987665421 112222
Q ss_pred ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccc
Q 013832 353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY 415 (435)
Q Consensus 353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~ 415 (435)
+...+.++.++++|.+|+.+|.+++.. +||||++|+++|+|++.+|+..+....|
T Consensus 308 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~~~ 362 (363)
T TIGR01186 308 -------LIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDSRE 362 (363)
T ss_pred -------hccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhhcc
Confidence 123567899999999999999999999 9999999999999999999998876654
No 185
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.52 E-value=8.1e-07 Score=88.04 Aligned_cols=167 Identities=17% Similarity=0.282 Sum_probs=116.1
Q ss_pred HHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCC---CCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCce
Q 013832 199 YEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLV 275 (435)
Q Consensus 199 ~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~---~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v 275 (435)
-.+.-...|++.+ ...-+|..+...++..+.-.+ .|.+.|+ ....+..|+.... | ...+++
T Consensus 56 tr~itl~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctpe~-QA~~v~~vK~~~~---------g--~~~~p~ 119 (503)
T KOG2550|consen 56 TRNITLNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTPED-QADMVRRVKNYEN---------G--FINNPI 119 (503)
T ss_pred hhcccccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCHHH-HHHHHHHHHHhhc---------c--cccCCc
Confidence 3444455688864 366788888777666554221 2333222 1112334443322 2 235667
Q ss_pred EeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccc
Q 013832 276 YAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPK 355 (435)
Q Consensus 276 ~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~ 355 (435)
.+.|+.++.++++.-..++...+||.....-. ++|+|+||-+|+ .|+.++ ...+.+++
T Consensus 120 v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~---~KLvG~vtsrdi-~f~~~~-----------~~~~~~vm------- 177 (503)
T KOG2550|consen 120 VISPTTTVGEVKEAKEKHGFSGIPVTEDGKRG---SKLVGIITSRDI-QFLEDN-----------SLLVSDVM------- 177 (503)
T ss_pred ccCCcccchhhhhhcccccccccccccCCccc---ceeEEEEehhhh-hhhhcc-----------cchhhhhc-------
Confidence 89999999999999999999999999532222 489999999998 555222 13333332
Q ss_pred cCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 356 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 356 ~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
....++.+.+.+|.++-++|.+++-..+||||++|+|+-+|+|+||.+
T Consensus 178 -----t~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k 225 (503)
T KOG2550|consen 178 -----TKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMK 225 (503)
T ss_pred -----ccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhh
Confidence 234478899999999999999999999999999999999999999875
No 186
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.52 E-value=1.7e-06 Score=89.75 Aligned_cols=122 Identities=16% Similarity=0.186 Sum_probs=99.0
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832 270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV 349 (435)
Q Consensus 270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i 349 (435)
.+.+++++..+.++.++.+.+.+.+.+|+||.++ +.+ .++|++..+|++........ .. ...
T Consensus 214 PR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~-~~D----~iiGiv~~Kdll~~~~~~~~-~~----~~~-------- 275 (429)
T COG1253 214 PRTDIVALDLTDTVEELIELILESGHSRIPVYDG-DLD----NIIGIVHVKDLLRALLDGQS-DL----DLR-------- 275 (429)
T ss_pred ecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcC-CCC----cEEEEEEHHHHHHHHhcCcc-cc----chh--------
Confidence 3568899999999999999999999999999973 233 69999999999987664311 00 000
Q ss_pred cccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccC
Q 013832 350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI 418 (435)
Q Consensus 350 gt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~~~l 418 (435)
.. -+|++.+++..++.++++.|.+.+.+-.-|+|+.|...|++|..||+..+-...+.+-
T Consensus 276 -~~--------~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~ 335 (429)
T COG1253 276 -VL--------VRPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEH 335 (429)
T ss_pred -hc--------ccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcc
Confidence 00 1267789999999999999999999988899999999999999999998887766554
No 187
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.51 E-value=3.5e-07 Score=66.72 Aligned_cols=53 Identities=26% Similarity=0.536 Sum_probs=48.4
Q ss_pred cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHH
Q 013832 269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC 327 (435)
Q Consensus 269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~ 327 (435)
+|.++++++.+++++.+|++.|.+++++++||+|+ ++ +++|++|.+||++++.
T Consensus 4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~---~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE---DG---KLVGIISRSDLLKALL 56 (57)
T ss_dssp HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST---TS---BEEEEEEHHHHHHHHH
T ss_pred CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec---CC---EEEEEEEHHHHHhhhh
Confidence 37789999999999999999999999999999963 35 8999999999999875
No 188
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.41 E-value=1.1e-06 Score=72.11 Aligned_cols=64 Identities=25% Similarity=0.552 Sum_probs=48.7
Q ss_pred EEE-EecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEEc--------CCc-eEEEEEEE-CCee--ecCCCCCe
Q 013832 28 MRF-VWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSI--------PPG-YHQYKFCV-DGEW--RHDEHQPF 93 (435)
Q Consensus 28 ~~f-~w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L--------~~g-~~~ykF~V-Dg~w--~~d~~~~~ 93 (435)
++| +|...|++|+|+|+||+|+.. .+|.+. ..|+|+++++. +.| .|+|++.. ||+| +.||-...
T Consensus 7 ~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~--~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~~ 84 (99)
T cd02854 7 VTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD--EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIKY 84 (99)
T ss_pred EEEEEECCCCCEEEEEccCCCCCCcCcccEEC--CCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCcceeE
Confidence 445 466679999999999999874 689885 48999999874 456 77777777 7876 56776653
No 189
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=4e-06 Score=85.91 Aligned_cols=107 Identities=12% Similarity=0.172 Sum_probs=85.8
Q ss_pred eCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccccccc
Q 013832 277 AGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKI 356 (435)
Q Consensus 277 v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~ 356 (435)
..++.+..+|+..|...+.+.+.|+|. .+ +++|+++..++.+..... .++.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~------------~~~~~~--------- 342 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIER---GN---KFVGAVSIDSLKTALTQQ------------QGLDAA--------- 342 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcC---CC---cEEEEEeHHHHHhhhhcC------------Cchhhh---------
Confidence 446778999999999999999999963 45 799999999997654321 112221
Q ss_pred CCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcc
Q 013832 357 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA 414 (435)
Q Consensus 357 g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~ 414 (435)
+...+.++.++++|.+|+..|.+.... +||||++|+++|+|++.++++.+...-
T Consensus 343 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~~ 396 (400)
T PRK10070 343 ---LIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDREG 396 (400)
T ss_pred ---hccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhcC
Confidence 113567899999999999999997776 999999999999999999999876543
No 190
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.36 E-value=3.3e-06 Score=83.21 Aligned_cols=131 Identities=18% Similarity=0.301 Sum_probs=108.7
Q ss_pred ccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhc
Q 013832 168 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETH 247 (435)
Q Consensus 168 ~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~ 247 (435)
...|+.|+|..-+.+..++.+++.++.++.+.+.-...+|||-.+-.+.+||+-.+|+++.+.+... +..+
T Consensus 198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~----~~k~----- 268 (423)
T COG4536 198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE----FTKE----- 268 (423)
T ss_pred ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc----ccHh-----
Confidence 5679999999999999999999999999999999999999998777789999999998877654321 2111
Q ss_pred cHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHH
Q 013832 248 TISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC 327 (435)
Q Consensus 248 ~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~ 327 (435)
.+... -.++..++..+++.+-+..|.+++-|--.|+| +.| .+.|++|..||++.+.
T Consensus 269 ---d~~~~---------------a~epyFVPe~Tpl~~QL~~F~~~k~hialVVD---EYG---~i~GLVTLEDIlEEIV 324 (423)
T COG4536 269 ---DILRA---------------ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVD---EYG---DIQGLVTLEDILEEIV 324 (423)
T ss_pred ---HHHHH---------------hcCCeecCCCCcHHHHHHHHHHhcceEEEEEe---ccC---cEEeeeeHHHHHHHHh
Confidence 11111 14667899999999999999999999999996 467 7999999999999998
Q ss_pred hhhc
Q 013832 328 RYFR 331 (435)
Q Consensus 328 ~~~~ 331 (435)
..+.
T Consensus 325 Gdft 328 (423)
T COG4536 325 GDFT 328 (423)
T ss_pred cccc
Confidence 7765
No 191
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.30 E-value=4e-06 Score=77.69 Aligned_cols=119 Identities=13% Similarity=0.158 Sum_probs=97.7
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832 270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV 349 (435)
Q Consensus 270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i 349 (435)
.+...+++..+.++.+++..|.+...+|+||+..+ .+ .+.||+-.+|+|+++...... ..+.++
T Consensus 75 PRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed-kD----~v~GIL~AKDLL~~~~~~~~~---------F~i~~l-- 138 (293)
T COG4535 75 PRSQMITLKRNQTLDECLDVIIESAHSRFPVISED-KD----HVEGILLAKDLLPFMRSDAEP---------FDIKEL-- 138 (293)
T ss_pred cHHHheeccccCCHHHHHHHHHHhccccCCcccCC-ch----hhhhhhhHHHHHHHhcCCccc---------ccHHHh--
Confidence 45688999999999999999999999999999642 22 699999999999997643211 112222
Q ss_pred cccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccc
Q 013832 350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY 415 (435)
Q Consensus 350 gt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~ 415 (435)
-+|.+.|++.-.|...++-+...+.+---|||+-|.+-|++|..||+..+-...=
T Consensus 139 -----------LRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIE 193 (293)
T COG4535 139 -----------LRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIE 193 (293)
T ss_pred -----------cccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccc
Confidence 1588899999999999999999888877799999999999999999988766543
No 192
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.21 E-value=2.1e-05 Score=81.24 Aligned_cols=131 Identities=24% Similarity=0.341 Sum_probs=103.9
Q ss_pred HHHHHHHHhhc--cCceecccCCCCCeEEeCCCccHHHHHHHHHH-----CCCceeeeeeCCCCeEEEeeehHHHHHHHH
Q 013832 158 VSRHRVSVFLS--THTAYELLPESGKVVALDIDLPVKQAFHILYE-----QGISMAPLWDFSKARFVGVLSASDFILILR 230 (435)
Q Consensus 158 ~~~~~i~~~l~--~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~-----~~i~s~PV~D~~~~~~vGilT~~D~i~il~ 230 (435)
..+..++..|+ ..++..+| ....+++..+.|+++|+..+.+ ..+..+-|+|.+ ++++|++|.++++.
T Consensus 118 ~~r~~v~~~l~y~e~taG~~M--t~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~Ll~--- 191 (451)
T COG2239 118 EERARVRQLLSYPEDTAGRIM--TTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDLLT--- 191 (451)
T ss_pred HHHHHHHHhcCCChhhhhccc--eeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHHhc---
Confidence 45666666665 46777788 4588999999999999999995 446788899975 69999999999863
Q ss_pred HhccCCCCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCC
Q 013832 231 ELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSF 310 (435)
Q Consensus 231 ~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~ 310 (435)
.++ -..+++. |.+.++++.+++...++++.+.+++.-.+||+|+ ++
T Consensus 192 ---a~~------------~~~i~~i--------------m~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~---~~-- 237 (451)
T COG2239 192 ---AEP------------DELLKDL--------------MEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDE---DN-- 237 (451)
T ss_pred ---CCc------------HhHHHHH--------------hcccceeecccCCHHHHHHHHHHhCCeecceECC---CC--
Confidence 111 0012222 5667999999999999999999999999999973 45
Q ss_pred CeEEEeeeHHhHHHHHHhh
Q 013832 311 PQLLHIASLSGILKCVCRY 329 (435)
Q Consensus 311 ~~lvGiiT~~dIl~~l~~~ 329 (435)
+++|++|..|++..+.+.
T Consensus 238 -~LiG~itiDDiidvi~eE 255 (451)
T COG2239 238 -RLIGIITIDDIIDVIEEE 255 (451)
T ss_pred -ceeeeeeHHHHHHHHHHH
Confidence 899999999999988754
No 193
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.20 E-value=1.2e-06 Score=69.53 Aligned_cols=57 Identities=33% Similarity=0.610 Sum_probs=43.7
Q ss_pred EEE-EecCCCcEEEEEeecCC-CCCC-CCCccccCCCCeEEEEEE--cCCceEEEEEEECCee
Q 013832 28 MRF-VWPYGGRSVFLSGSFNR-WSEL-LPMSPVEGCPTVFQIIWS--IPPGYHQYKFCVDGEW 85 (435)
Q Consensus 28 ~~f-~w~~~~~~V~l~Gsf~~-W~~~-~~m~~~~~~~~~~~~~~~--L~~g~~~ykF~VDg~w 85 (435)
++| +|...|++|.|++.|++ |... ++|++. ...|+|+++++ +++|.+.|+|.||+..
T Consensus 13 ~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~-~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 13 VTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRK-DDDGVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp EEEEEE-TTESEEEEEEETTTSSEEEEEEEEEE-CTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred EEEEEECCCCCEEEEEEEeeecCCCceEEeeec-CCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 444 35667999999999999 8755 699842 46899999998 8888888888887643
No 194
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.16 E-value=6.4e-06 Score=76.38 Aligned_cols=127 Identities=16% Similarity=0.288 Sum_probs=102.5
Q ss_pred cCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhcc
Q 013832 169 THTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHT 248 (435)
Q Consensus 169 ~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~ 248 (435)
..++.|+|-.-++.+++..+.++.+....+.+..-+.+||+.+++..+.|||=+.|++.++.. ....+ .
T Consensus 66 dl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~---~~~~F--------~ 134 (293)
T COG4535 66 DLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRS---DAEPF--------D 134 (293)
T ss_pred HhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcC---Ccccc--------c
Confidence 345566666666899999999999999999999999999999888899999999999876532 11111 1
Q ss_pred HHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh
Q 013832 249 ISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR 328 (435)
Q Consensus 249 i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~ 328 (435)
+ ++ +-+|.+.++.+..+...++-++.++.|...|+| +-| -+-|++|..||+..+..
T Consensus 135 i---~~---------------lLRPav~VPESKrvd~lLkeFR~~RnHMAIViD---EfG---gVsGLVTIEDiLEqIVG 190 (293)
T COG4535 135 I---KE---------------LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVID---EFG---GVSGLVTIEDILEQIVG 190 (293)
T ss_pred H---HH---------------hcccceecccchhHHHHHHHHHhhcCceEEEEe---ccC---CeeeeEEHHHHHHHHhc
Confidence 1 22 237889999999999999999999999999996 344 49999999999999885
Q ss_pred hh
Q 013832 329 YF 330 (435)
Q Consensus 329 ~~ 330 (435)
..
T Consensus 191 dI 192 (293)
T COG4535 191 DI 192 (293)
T ss_pred cc
Confidence 43
No 195
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.10 E-value=5.6e-06 Score=69.43 Aligned_cols=52 Identities=27% Similarity=0.443 Sum_probs=46.3
Q ss_pred CCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832 357 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 408 (435)
Q Consensus 357 g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~ 408 (435)
++.|.+++.++.+++++.+|++.|.+++++.+||+|++|+++|+|+..||..
T Consensus 61 ~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 61 RDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred HHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 3444567889999999999999999999999999999999999999999863
No 196
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.04 E-value=1.5e-05 Score=54.50 Aligned_cols=47 Identities=30% Similarity=0.543 Sum_probs=43.1
Q ss_pred ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 013832 364 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 410 (435)
Q Consensus 364 v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~ 410 (435)
++++.+++++.++++.|.+++++.+||++++++++|+++..|+.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 46789999999999999999999999999889999999999998764
No 197
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.87 E-value=4.2e-05 Score=79.79 Aligned_cols=143 Identities=13% Similarity=0.193 Sum_probs=101.5
Q ss_pred CccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhh-c-ccCC--Ccccc--
Q 013832 267 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF-R-HCSS--SLPIL-- 340 (435)
Q Consensus 267 g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~-~-~~~~--~~~~~-- 340 (435)
+.+|+++++++..-+.+...++.+.....+.+||+|+.+. +....+.|+|-++.++..+.... . ..+. .++..
T Consensus 585 ~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~-~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~ 663 (762)
T KOG0474|consen 585 GEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPS-NEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRK 663 (762)
T ss_pred hhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCC-ccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhc
Confidence 3468899999999999999999999999999999985322 11237999999999998876542 1 1000 01100
Q ss_pred ---------ccccccccCccccc----ccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHH
Q 013832 341 ---------KLPICAIPVGTWVP----KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT 407 (435)
Q Consensus 341 ---------~~~v~~l~igt~~~----~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~ 407 (435)
..+++++.+..... .....|.....++.+++++..|+.++.+-+.+++-||++..+++|++||+|+.
T Consensus 664 ~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~ 743 (762)
T KOG0474|consen 664 FTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLA 743 (762)
T ss_pred CCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhh
Confidence 01122222111100 01123445667899999999999999999999999999989999999999998
Q ss_pred HHH
Q 013832 408 ALA 410 (435)
Q Consensus 408 ~~~ 410 (435)
..-
T Consensus 744 ~~~ 746 (762)
T KOG0474|consen 744 RYR 746 (762)
T ss_pred hHH
Confidence 654
No 198
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.83 E-value=0.00027 Score=71.65 Aligned_cols=108 Identities=14% Similarity=0.293 Sum_probs=84.8
Q ss_pred EEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhccc
Q 013832 183 VALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQ 262 (435)
Q Consensus 183 i~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~~~ 262 (435)
+...++.+..+|+..|..++...+.|+|.+ +++.|.++..++...+.. . . .+.+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~---~-~-------------~~~~~------- 307 (363)
T TIGR01186 253 ITKTADKGPRSALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKK---A-Q-------------GLQDV------- 307 (363)
T ss_pred eeecCCCCHHHHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhc---C-C-------------chhhh-------
Confidence 345667789999999999999999999964 799999999987643321 0 0 01111
Q ss_pred ccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhh
Q 013832 263 IDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRY 329 (435)
Q Consensus 263 ~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~ 329 (435)
+...+.++.++++|.+++..|.+.+.. +||+| ++| +++|+||..++++.+...
T Consensus 308 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~---~~~---~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 308 -------LIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVD---EDQ---RLVGIVTRGSLVDALYDS 360 (363)
T ss_pred -------hccCCceECCCCcHHHHHHHHHhCCCC-EEEEC---CCC---cEEEEEEHHHHHHHHHhh
Confidence 234567899999999999999999999 99996 346 899999999999988753
No 199
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.78 E-value=7e-05 Score=61.06 Aligned_cols=56 Identities=25% Similarity=0.548 Sum_probs=45.8
Q ss_pred eeEEEEec---CCCcEEEEEeecC---CCCC--CCCCccccC--CCCeEEEEEEcCCc-eEEEEEEE
Q 013832 26 IPMRFVWP---YGGRSVFLSGSFN---RWSE--LLPMSPVEG--CPTVFQIIWSIPPG-YHQYKFCV 81 (435)
Q Consensus 26 ~~~~f~w~---~~~~~V~l~Gsf~---~W~~--~~~m~~~~~--~~~~~~~~~~L~~g-~~~ykF~V 81 (435)
+.++|.-. ..+++|+|+||.. +|++ .++|...++ ....|++++.||.| .++|||++
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 66777774 3589999999987 7997 378887533 46899999999999 89999999
No 200
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=0.00035 Score=71.75 Aligned_cols=106 Identities=16% Similarity=0.249 Sum_probs=82.9
Q ss_pred eCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhccccc
Q 013832 185 LDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQID 264 (435)
Q Consensus 185 ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~~~~~ 264 (435)
...+.+..+|+..|.+++..++.|+|.+ ++++|+++..++...... . . .+.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~---~-~-------------~~~~~--------- 342 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQ---Q-Q-------------GLDAA--------- 342 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhc---C-C-------------chhhh---------
Confidence 4466789999999999999999999964 799999999998643321 0 0 01111
Q ss_pred CCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhh
Q 013832 265 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRY 329 (435)
Q Consensus 265 ~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~ 329 (435)
+.....++.++++|.+|+..|.+.... +||+| ++| +++|+||..++++.+...
T Consensus 343 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~---~~~---~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 343 -----LIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVD---EDQ---QYVGIISKGMLLRALDRE 395 (400)
T ss_pred -----hccCCceeCCCCCHHHHHHHHHhCCCc-EEEEC---CCC---cEEEEEEHHHHHHHHHhc
Confidence 224567899999999999999997666 99996 346 899999999999988653
No 201
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.73 E-value=0.00017 Score=58.57 Aligned_cols=53 Identities=23% Similarity=0.459 Sum_probs=42.2
Q ss_pred eEEEEecC---CCcEEEEEee---cCCCCCC--CCCccccCCCCeEEEEEEcCCc-eEEEEEEE
Q 013832 27 PMRFVWPY---GGRSVFLSGS---FNRWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (435)
Q Consensus 27 ~~~f~w~~---~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~~~ykF~V 81 (435)
+++|.-++ .|++|+|+|+ |.+|++. ++|+.. ..+.|++++.||++ .++|||++
T Consensus 2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~--~~~~W~~~v~l~~~~~~eYKy~~ 63 (95)
T cd05808 2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAA--TYPVWSGTVDLPAGTAIEYKYIK 63 (95)
T ss_pred eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCC--CCCCEEEEEEeCCCCeEEEEEEE
Confidence 45555542 4899999995 8899865 588764 46889999999988 89999997
No 202
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.71 E-value=7.8e-05 Score=79.80 Aligned_cols=57 Identities=26% Similarity=0.429 Sum_probs=50.7
Q ss_pred cCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832 356 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (435)
Q Consensus 356 ~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~ 412 (435)
+++.|.++++++++++++.+|+++|.+++++.+||||++|+++|++|..||.+...+
T Consensus 70 V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~ 126 (546)
T PRK14869 70 VRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMD 126 (546)
T ss_pred HHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHh
Confidence 344456789999999999999999999999999999999999999999999986554
No 203
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.71 E-value=0.00017 Score=76.95 Aligned_cols=169 Identities=20% Similarity=0.247 Sum_probs=93.5
Q ss_pred eeEEE-EecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCceEEEEEEECCe-----eecCCCCCeeeCC
Q 013832 26 IPMRF-VWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE-----WRHDEHQPFISSE 97 (435)
Q Consensus 26 ~~~~f-~w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VDg~-----w~~d~~~~~~~d~ 97 (435)
..++| +|...+++|.|.|+||+|... .+|... +..|.|+++++ +++| +.|||.+++. +..||-.-.....
T Consensus 36 ~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~-~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a~~~~~~ 113 (628)
T COG0296 36 SGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDR-KESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYARRQEVG 113 (628)
T ss_pred CceEEEEECCCCCeEEEEeecCCccceecccccC-CCCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchhhccCCC
Confidence 34555 577779999999999999985 355432 35799999999 9999 9999999653 2555544322222
Q ss_pred CCCeeeEEEecCCCCCCCCC--CCCCCCCCCCCchhhhhccccccCCCcchhcccccH-HHHHHHHHHHHHhhccCceec
Q 013832 98 YGIVNTVLLATEPNFMHGIN--QGMPSGSNMDVDNEAFQRLVQISDGSLTEAAERISE-ADLQVSRHRVSVFLSTHTAYE 174 (435)
Q Consensus 98 ~G~~nnvl~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~i~~~l~~~~~~d 174 (435)
-++-. +.+..+++.-.-. .....+...+--.-+ ++--|+|+. + +..+ .+....+.++-.-| ..|+-|
T Consensus 114 p~~aS--~v~~~~~y~W~d~~~~~~~~~~~~e~~vIY-----ElHvGs~~~-~-~~~~~~e~a~~llpYl~el-G~T~IE 183 (628)
T COG0296 114 PHTAS--QVVDLPDYEWQDERWDRAWRGRFWEPIVIY-----ELHVGSFTP-D-RFLGYFELAIELLPYLKEL-GITHIE 183 (628)
T ss_pred CCCcc--eecCCCCcccccccccccccCCCCCCceEE-----EEEeeeccC-C-CCcCHHHHHHHHhHHHHHh-CCCEEE
Confidence 22211 1122222220000 000001111111111 233588887 4 4333 55555555555555 589999
Q ss_pred ccCCCCC----------eEEeCC------CccHHHHHHHHHHCCCcee
Q 013832 175 LLPESGK----------VVALDI------DLPVKQAFHILYEQGISMA 206 (435)
Q Consensus 175 l~p~s~~----------vi~ld~------~~~v~eA~~~l~~~~i~s~ 206 (435)
+||-+.. +--..+ -.-++.-+...++.||.-+
T Consensus 184 LMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgVi 231 (628)
T COG0296 184 LMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVI 231 (628)
T ss_pred EcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEE
Confidence 9998632 111111 1235666666777777654
No 204
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.64 E-value=0.00017 Score=59.25 Aligned_cols=63 Identities=22% Similarity=0.259 Sum_probs=46.7
Q ss_pred EEE-EecCCCcEEEEEeecCCCC-----CCCCCccccCCCCeEEEEEE-cCCceEEEEEEECCe-----eecCCCCCee
Q 013832 28 MRF-VWPYGGRSVFLSGSFNRWS-----ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE-----WRHDEHQPFI 94 (435)
Q Consensus 28 ~~f-~w~~~~~~V~l~Gsf~~W~-----~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VDg~-----w~~d~~~~~~ 94 (435)
++| +|...|++|.|+. |++|. ..++|.+ ..+|+|++.++ +.+|.+ |+|.|+|. ...||-...+
T Consensus 10 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~--~~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~~~~DPyA~~~ 84 (100)
T cd02860 10 TTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKR--GENGVWSVTLDGDLEGYY-YLYEVKVYKGETNEVVDPYAKAL 84 (100)
T ss_pred EEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeec--CCCCEEEEEeCCccCCcE-EEEEEEEeceEEEEEcCcccEeE
Confidence 456 6777799999998 88886 3468887 46899999987 555654 88888765 6667766543
No 205
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=97.64 E-value=0.00023 Score=70.53 Aligned_cols=118 Identities=13% Similarity=0.199 Sum_probs=93.9
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832 270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV 349 (435)
Q Consensus 270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i 349 (435)
.+..+..+..+++..++++.+...-..|+|+..++ ..+++||+..+++++++.+... .. ...+..+
T Consensus 208 pR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~-----~DnIiGvlh~r~llr~l~e~~~-~~------k~d~~~~-- 273 (423)
T COG4536 208 PRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDD-----LDNIIGVLHVRDLLRLLNEKNE-FT------KEDILRA-- 273 (423)
T ss_pred cccceeeecCCCCHHHHHHHHhhCCCCceeeecCC-----hhHhhhhhhHHHHHHHhhccCc-cc------HhHHHHH--
Confidence 45688899999999999999999999999999532 2269999999999999886421 10 0111111
Q ss_pred cccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832 350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (435)
Q Consensus 350 gt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~ 412 (435)
. .++..|++.++|.+-+..|.+++-+---||||-|.+.|++|..||+.-+-.
T Consensus 274 ---a--------~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVG 325 (423)
T COG4536 274 ---A--------DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVG 325 (423)
T ss_pred ---h--------cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhc
Confidence 0 255679999999999999999998888899999999999999999976554
No 206
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=97.61 E-value=0.00025 Score=70.70 Aligned_cols=126 Identities=15% Similarity=0.247 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeC--CCCeEEEeeehHHHHHHHHHh
Q 013832 155 DLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDF--SKARFVGVLSASDFILILREL 232 (435)
Q Consensus 155 ~~e~~~~~i~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~--~~~~~vGilT~~D~i~il~~~ 232 (435)
++...-+.+..|-... ....+++.++.++.+++.+...+++..+||... ..++++|++|.+|+ +++.
T Consensus 99 ~QA~~v~~vK~~~~g~--------~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi-~f~~-- 167 (503)
T KOG2550|consen 99 DQADMVRRVKNYENGF--------INNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI-QFLE-- 167 (503)
T ss_pred HHHHHHHHHHHhhccc--------ccCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh-hhhh--
Confidence 3333445555555332 346679999999999999999999999999852 24689999999996 3331
Q ss_pred ccCCCCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCe
Q 013832 233 GNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQ 312 (435)
Q Consensus 233 ~~~~~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~ 312 (435)
.+. . -+.+ +|+...++.....+|.++-+++.+.+-..+||++. .| +
T Consensus 168 -~~~-~------------~~~~--------------vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~---~g---e 213 (503)
T KOG2550|consen 168 -DNS-L------------LVSD--------------VMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD---KG---E 213 (503)
T ss_pred -ccc-c------------hhhh--------------hcccccccccccccHHHHHHHHHhhhcCCcceecc---CC---c
Confidence 110 0 0112 25555688999999999999999999999999973 45 7
Q ss_pred EEEeeeHHhHHHH
Q 013832 313 LLHIASLSGILKC 325 (435)
Q Consensus 313 lvGiiT~~dIl~~ 325 (435)
++.+|+..|+.+.
T Consensus 214 lva~~~rtDl~k~ 226 (503)
T KOG2550|consen 214 LVAMLSRTDLMKN 226 (503)
T ss_pred eeeeeehhhhhhh
Confidence 9999999999764
No 207
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.59 E-value=0.00045 Score=58.78 Aligned_cols=48 Identities=23% Similarity=0.503 Sum_probs=40.0
Q ss_pred CCcEEEEEee---cCCCCCC--CCCccccCCCCeEEEEEEcCCc-eEEEEEEEC
Q 013832 35 GGRSVFLSGS---FNRWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVD 82 (435)
Q Consensus 35 ~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~~~ykF~VD 82 (435)
.++.|+|+|+ +.+|++. .+|.+.....+.|++.+.||++ .++|||++.
T Consensus 14 ~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~ 67 (120)
T cd05814 14 PGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVA 67 (120)
T ss_pred CCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEE
Confidence 4899999999 8999854 5887642246889999999998 999999994
No 208
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.00023 Score=74.42 Aligned_cols=152 Identities=13% Similarity=0.138 Sum_probs=104.1
Q ss_pred hhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCC----CeEEEeeehHHHHHHHHHhc---cCCCC
Q 013832 166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSK----ARFVGVLSASDFILILRELG---NHGSN 238 (435)
Q Consensus 166 ~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~----~~~vGilT~~D~i~il~~~~---~~~~~ 238 (435)
.+++.++.|+| +.+|+++..-..+...+++|....-...||+|... +++.|++=.+.++..++.-. +.+++
T Consensus 578 ~mr~L~a~ev~--~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~ 655 (762)
T KOG0474|consen 578 YMRNLTAGEVM--SKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST 655 (762)
T ss_pred HhhhhhHhhhc--cCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence 45667888888 45999999999999999999999999999999643 47889998998887775322 11111
Q ss_pred C--------Chhhhhh--ccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCC
Q 013832 239 L--------TEEELET--HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDG 308 (435)
Q Consensus 239 l--------~~e~l~~--~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g 308 (435)
. ..+++.. ..++...-.......-.|- -..|...+.++.+++|+..+..++++-+.+++.|+.. ..
T Consensus 656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl-~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~--~~- 731 (762)
T KOG0474|consen 656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDL-HPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK--TN- 731 (762)
T ss_pred cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhcccc-ccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC--CC-
Confidence 1 1111111 0111100000000000111 1256778889999999999999999999999999963 33
Q ss_pred CCCeEEEeeeHHhHHHHH
Q 013832 309 SFPQLLHIASLSGILKCV 326 (435)
Q Consensus 309 ~~~~lvGiiT~~dIl~~l 326 (435)
+++||+|++|+.++-
T Consensus 732 ---~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 732 ---RVVGILTRKDLARYR 746 (762)
T ss_pred ---ceeEEEehhhhhhHH
Confidence 589999999998654
No 209
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.55 E-value=0.00057 Score=55.32 Aligned_cols=63 Identities=22% Similarity=0.431 Sum_probs=47.7
Q ss_pred eeEEEEecC---CCcEEEEEeec---CCCCCCCCCccccCCCCeEEEEEEcCCc-eEEEEEEE---CC--eeecCCCC
Q 013832 26 IPMRFVWPY---GGRSVFLSGSF---NRWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV---DG--EWRHDEHQ 91 (435)
Q Consensus 26 ~~~~f~w~~---~~~~V~l~Gsf---~~W~~~~~m~~~~~~~~~~~~~~~L~~g-~~~ykF~V---Dg--~w~~d~~~ 91 (435)
+.++|.-++ .|+.++|+|+- -+|++..+|... .+.|++.+.||++ .++|||++ || .|...++.
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~---~~~W~~~~~l~~~~~ieyKy~~~~~~~~v~WE~g~Nr 76 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWT---ENGWVCDLELDGGELVEYKFVIVKRDGSVIWEGGNNR 76 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccC---CCCEEEEEEeCCCCcEEEEEEEEcCCCCEEEEeCCCE
Confidence 456666654 48999999985 589987788763 4679999999998 99999999 44 37555443
No 210
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.49 E-value=0.00018 Score=60.15 Aligned_cols=54 Identities=19% Similarity=0.335 Sum_probs=46.9
Q ss_pred CceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHH
Q 013832 170 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFI 226 (435)
Q Consensus 170 ~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i 226 (435)
.++.|+|.. ++.+++.+.++.+|++.|.++++..+||+|.+ ++++|++|..|+.
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhh
Confidence 457777744 57789999999999999999999999999964 7999999999975
No 211
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.43 E-value=0.0016 Score=53.81 Aligned_cols=65 Identities=29% Similarity=0.575 Sum_probs=49.4
Q ss_pred eeeEEEEecC-----CCcEEEEEeecC---CCCCCC-----CCccccCCCCeEEEEEEcCCc-eEEEEEEE---CCe--e
Q 013832 25 LIPMRFVWPY-----GGRSVFLSGSFN---RWSELL-----PMSPVEGCPTVFQIIWSIPPG-YHQYKFCV---DGE--W 85 (435)
Q Consensus 25 ~~~~~f~w~~-----~~~~V~l~Gsf~---~W~~~~-----~m~~~~~~~~~~~~~~~L~~g-~~~ykF~V---Dg~--w 85 (435)
-||++|+-.. .|++++|+|+-. +|+... +|.. .....|++.+.||.| ..+|||++ ||. |
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~--~~~~~W~~~~~lp~~~~veyK~v~~~~~g~v~W 79 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLC--PNWPDWFVVASVPAGTYIEFKFLKAPADGTGTW 79 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhcccccccccc--CCCCCEEEEEEcCCCCcEEEEEEEECCCCCEEE
Confidence 3899999863 478999999854 899742 6654 345789999999999 99999999 443 7
Q ss_pred ecCCCC
Q 013832 86 RHDEHQ 91 (435)
Q Consensus 86 ~~d~~~ 91 (435)
...++.
T Consensus 80 E~g~Nr 85 (103)
T cd05820 80 EGGSNH 85 (103)
T ss_pred EeCCCE
Confidence 655554
No 212
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.36 E-value=0.0013 Score=53.96 Aligned_cols=57 Identities=19% Similarity=0.395 Sum_probs=43.9
Q ss_pred eeeEEEEecC----CCcEEEEEe---ecCCCCCCC-CCcccc-CCCCeEEEEEEcCCc-eEEEEEEE
Q 013832 25 LIPMRFVWPY----GGRSVFLSG---SFNRWSELL-PMSPVE-GCPTVFQIIWSIPPG-YHQYKFCV 81 (435)
Q Consensus 25 ~~~~~f~w~~----~~~~V~l~G---sf~~W~~~~-~m~~~~-~~~~~~~~~~~L~~g-~~~ykF~V 81 (435)
-||++|.-.. .|++|+|+| ++.+|+... +|.... ...+.|++.+.||+| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~ 68 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK 68 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 4889999742 479999999 577998752 343321 235789999999999 99999999
No 213
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.36 E-value=0.00064 Score=46.11 Aligned_cols=47 Identities=34% Similarity=0.559 Sum_probs=41.3
Q ss_pred eEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHH
Q 013832 182 VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILIL 229 (435)
Q Consensus 182 vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il 229 (435)
+++++++.++.++.+.|.++++..+||++++ ++++|+++..|++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHhh
Confidence 4578899999999999999999999999964 7999999999987543
No 214
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.36 E-value=0.0013 Score=54.21 Aligned_cols=61 Identities=26% Similarity=0.485 Sum_probs=41.3
Q ss_pred EecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCc-eEEEEEEEC-Cee--ecCCCCC
Q 013832 31 VWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCVD-GEW--RHDEHQP 92 (435)
Q Consensus 31 ~w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g-~~~ykF~VD-g~w--~~d~~~~ 92 (435)
+|...|++|.|.++|++|... .+|.+. ...|.|.+.++ +++| .|.|++..+ |.| +.||-..
T Consensus 27 v~aP~A~~V~l~~~~~~~~~~~~~m~~~-~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~ 93 (106)
T cd02855 27 VWAPNARRVSVVGDFNGWDGRRHPMRRR-GDSGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAF 93 (106)
T ss_pred EECCCCCEEEEEEECCCCCCcceecEEC-CCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCce
Confidence 366679999999999999653 588875 24799999886 6666 455544444 333 3355443
No 215
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.12 E-value=0.0061 Score=64.16 Aligned_cols=134 Identities=12% Similarity=0.133 Sum_probs=89.5
Q ss_pred CceEeCCC-CCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCC---Ccccccccccccc
Q 013832 273 PLVYAGPN-DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS---SLPILKLPICAIP 348 (435)
Q Consensus 273 ~~v~v~~~-~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~---~~~~~~~~v~~l~ 348 (435)
+++.+..+ .++.|...+|.+...+..||+-+. +.. .++|++..+++...+......... ....+..+....+
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~-~sq---~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~ 632 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSE-DSQ---RLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAV 632 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEcc-ccc---eeEEEEchHHHHHHHhhhccccccceecccccCCCCcccc
Confidence 45555544 899999999999999999998643 333 799999999998777632211100 0001111111111
Q ss_pred Cccccc-ccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 013832 349 VGTWVP-KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 411 (435)
Q Consensus 349 igt~~~-~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~ 411 (435)
-+.-.+ ...+.+.-...++...+|...+++++.+-+++.+-| +++|++.|+||+.|+++..+
T Consensus 633 ~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v-~~~G~l~Giitkkd~l~~~r 695 (696)
T KOG0475|consen 633 AGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILV-TKNGILLGIITKKDCLRHTR 695 (696)
T ss_pred CCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEE-ccCCeeEeeeehHHHHHhhc
Confidence 000000 011233345678999999999999999999999965 56899999999999998654
No 216
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=97.11 E-value=0.0047 Score=51.18 Aligned_cols=58 Identities=19% Similarity=0.436 Sum_probs=43.5
Q ss_pred ceeeEEEEecC---CCcEEEEEeecC---CCCCC--CCCcccc--CCCCeEEEEEEcCCc-eEEEEEEE
Q 013832 24 VLIPMRFVWPY---GGRSVFLSGSFN---RWSEL--LPMSPVE--GCPTVFQIIWSIPPG-YHQYKFCV 81 (435)
Q Consensus 24 ~~~~~~f~w~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~--~~~~~~~~~~~L~~g-~~~ykF~V 81 (435)
..++++|.-.+ .|+.|+|+|+-. +|++. ++|.... .....|++.+.||++ .++|||++
T Consensus 5 ~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~ 73 (106)
T cd05811 5 TTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR 73 (106)
T ss_pred CEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence 34677776643 489999999854 79964 5776431 135789999999998 79999996
No 217
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.02 E-value=0.0025 Score=51.76 Aligned_cols=53 Identities=19% Similarity=0.357 Sum_probs=41.2
Q ss_pred eEEEEe--c--CCCcEEEEEeec---CCCCCCCCCccccCCCCeEEEEEEcCCc-eEEEEEEE
Q 013832 27 PMRFVW--P--YGGRSVFLSGSF---NRWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (435)
Q Consensus 27 ~~~f~w--~--~~~~~V~l~Gsf---~~W~~~~~m~~~~~~~~~~~~~~~L~~g-~~~ykF~V 81 (435)
+++|.- + .+++.++|+|+= -+|+...+|... ..+.|++++.||++ .++|||++
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~--~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYV--KDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCC--CCCCEEEEEEecCCCcEEEEEEE
Confidence 455554 3 245788999984 479987899764 45789999999998 79999998
No 218
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.95 E-value=0.0059 Score=50.20 Aligned_cols=66 Identities=23% Similarity=0.340 Sum_probs=46.7
Q ss_pred eeeEEEEecC----CCcEEEEEeecC---CCCCCC--CCccc--cCCCCeEEEEEEcCCc-eEEEEEEE---CCe--eec
Q 013832 25 LIPMRFVWPY----GGRSVFLSGSFN---RWSELL--PMSPV--EGCPTVFQIIWSIPPG-YHQYKFCV---DGE--WRH 87 (435)
Q Consensus 25 ~~~~~f~w~~----~~~~V~l~Gsf~---~W~~~~--~m~~~--~~~~~~~~~~~~L~~g-~~~ykF~V---Dg~--w~~ 87 (435)
.++++|.-+. .|++|+|+|+-. +|+... .|... ......|++.++||.| .++|||++ ||. |..
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~~~~~~~~~WE~ 81 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIKKNGDNTVTWES 81 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEEECCCCCEEEEe
Confidence 4788888742 489999999844 899753 23211 1245689999999999 99999999 343 655
Q ss_pred CCC
Q 013832 88 DEH 90 (435)
Q Consensus 88 d~~ 90 (435)
.++
T Consensus 82 g~n 84 (101)
T cd05807 82 GSN 84 (101)
T ss_pred CCC
Confidence 444
No 219
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.91 E-value=0.0036 Score=51.65 Aligned_cols=54 Identities=24% Similarity=0.365 Sum_probs=40.7
Q ss_pred EEE-EecCCCcEEEEEeecCCCC--CCCCCccccCCCCeEEEEEE-cCCceEEEEEEECCee
Q 013832 28 MRF-VWPYGGRSVFLSGSFNRWS--ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW 85 (435)
Q Consensus 28 ~~f-~w~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VDg~w 85 (435)
++| +|...|++|.|+. |++|. ..++|++. .+|+|.+.++ +.+|. .|+|.|||.|
T Consensus 11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~--~~GvW~~~v~~~~~g~-~Y~y~i~g~~ 68 (103)
T cd02856 11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEE--YGGVWHGFLPGIKAGQ-RYGFRVHGPY 68 (103)
T ss_pred eEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc--cCCEEEEEECCCCCCC-EEEEEECCcc
Confidence 455 6766699999999 66664 33688764 4799999985 66665 7999999953
No 220
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.83 E-value=0.0057 Score=64.36 Aligned_cols=136 Identities=11% Similarity=0.105 Sum_probs=91.2
Q ss_pred CeEEeCCC-ccHHHHHHHHHHCCCceeeee-eCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHh
Q 013832 181 KVVALDID-LPVKQAFHILYEQGISMAPLW-DFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAY 258 (435)
Q Consensus 181 ~vi~ld~~-~~v~eA~~~l~~~~i~s~PV~-D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~ 258 (435)
+++++..+ .++.+.-.+|.+......||+ ++++++++|++..+|+...+....+..+......+ +-.+..+.....
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~--~f~~~~~~~~~~ 634 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI--YFNDPSPSAVAG 634 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc--ccCCCCccccCC
Confidence 45555555 899999999999999989986 55677899999999998877644433222211111 000000000000
Q ss_pred hcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832 259 LNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV 326 (435)
Q Consensus 259 ~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l 326 (435)
.+.. -+.-.++...++++...++..-++.++.+-+++.+.|.+ +| +++|+||.+|++++.
T Consensus 635 ~~~~-~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~----~G---~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 635 IPSR-LDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK----NG---ILLGIITKKDCLRHT 694 (696)
T ss_pred CCCC-cCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc----CC---eeEeeeehHHHHHhh
Confidence 0000 000114556778899999999999999999999999983 57 899999999999864
No 221
>PRK12568 glycogen branching enzyme; Provisional
Probab=96.83 E-value=0.0024 Score=69.81 Aligned_cols=64 Identities=27% Similarity=0.540 Sum_probs=47.5
Q ss_pred eEEE-EecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCceEEEEEEE---CCeee--cCCCCCe
Q 013832 27 PMRF-VWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV---DGEWR--HDEHQPF 93 (435)
Q Consensus 27 ~~~f-~w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~V---Dg~w~--~d~~~~~ 93 (435)
-++| +|...|++|+|+|+||+|... .||.+. ..|+|++.++ +.+| ..|||.| ||.+. .||-...
T Consensus 139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~--~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~k~DPYA~~ 210 (730)
T PRK12568 139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR--IGGFWELFLPRVEAG-ARYKYAITAADGRVLLKADPVARQ 210 (730)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCccceecccC--CCCEEEEEECCCCCC-CEEEEEEEcCCCeEeecCCCcceE
Confidence 3566 566669999999999999865 589764 6899999985 6777 3566666 78664 5665543
No 222
>PRK12313 glycogen branching enzyme; Provisional
Probab=96.81 E-value=0.0029 Score=68.99 Aligned_cols=66 Identities=21% Similarity=0.374 Sum_probs=47.3
Q ss_pred eEEEE-ecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCc-eEEEEEEE-CCee--ecCCCCCee
Q 013832 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCV-DGEW--RHDEHQPFI 94 (435)
Q Consensus 27 ~~~f~-w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g-~~~ykF~V-Dg~w--~~d~~~~~~ 94 (435)
.++|+ |...|++|+|+|+|++|... .+|.+. ..|+|+++++ +.+| .|+|++.. ||.| +.||-....
T Consensus 39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~--~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~~~ 111 (633)
T PRK12313 39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR--ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAFYF 111 (633)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCccccccccc--CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceEEE
Confidence 45553 55569999999999999875 588874 5799999998 4455 77777755 5665 445555433
No 223
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.79 E-value=0.0063 Score=49.97 Aligned_cols=45 Identities=27% Similarity=0.510 Sum_probs=37.8
Q ss_pred CCcEEEEEee---cCCCCCC--CCCccccCCCCeEEEEEEcCCc-eEEEEEEE
Q 013832 35 GGRSVFLSGS---FNRWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (435)
Q Consensus 35 ~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~~~ykF~V 81 (435)
.|+.++|+|+ .-+|+.. ++|... ....|++++.||++ .++|||++
T Consensus 12 ~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~--~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 12 FGEAVYISGNCNQLGNWNPSKAKRMQWN--EGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred CCCEEEEEeCcHHHCCCCccccCcccCC--CCCCEEEEEEECCCCcEEEEEEE
Confidence 4899999999 5689965 578764 35789999999988 89999998
No 224
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.68 E-value=0.017 Score=47.36 Aligned_cols=45 Identities=27% Similarity=0.510 Sum_probs=37.1
Q ss_pred CCcEEEEEeec---CCCCCC--CCCccccCCCCeEEEEEEcCCc--eEEEEEEE
Q 013832 35 GGRSVFLSGSF---NRWSEL--LPMSPVEGCPTVFQIIWSIPPG--YHQYKFCV 81 (435)
Q Consensus 35 ~~~~V~l~Gsf---~~W~~~--~~m~~~~~~~~~~~~~~~L~~g--~~~ykF~V 81 (435)
.|++|+|+|+- .+|++. ++|... ....|++.+.+|++ .++|||++
T Consensus 13 ~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~--~~~~W~~~v~~p~~~~~ieYKyvi 64 (99)
T cd05816 13 KGQSVYVTGSSPELGNWDPQKALKLSDV--GFPIWEADIDISKDSFPFEYKYII 64 (99)
T ss_pred CCCEEEEEEChHHhCCCCccccccCCCC--CCCcEEEEEEeCCCCccEEEEEEE
Confidence 48999999994 589964 588764 46789999999986 69999998
No 225
>PRK14705 glycogen branching enzyme; Provisional
Probab=96.67 E-value=0.0032 Score=72.40 Aligned_cols=62 Identities=29% Similarity=0.664 Sum_probs=45.6
Q ss_pred EEE-EecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCceEEEEEEEC---Cee--ecCCCC
Q 013832 28 MRF-VWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD---GEW--RHDEHQ 91 (435)
Q Consensus 28 ~~f-~w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VD---g~w--~~d~~~ 91 (435)
++| +|...|++|+|+|+||+|... .+|.+. ...|+|++.++ +.+|. .|||.|+ |.| +.||-.
T Consensus 640 v~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~-~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPyA 709 (1224)
T PRK14705 640 VSFAVWAPNAQAVRVKGDFNGWDGREHSMRSL-GSSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPLA 709 (1224)
T ss_pred EEEEEECCCCCEEEEEEEecCCCCCcccceEC-CCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCccc
Confidence 445 566779999999999999865 588764 35799999985 78884 5777774 555 345543
No 226
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=96.66 E-value=0.0041 Score=68.19 Aligned_cols=59 Identities=29% Similarity=0.440 Sum_probs=43.7
Q ss_pred EecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-------cCCceEEEEEEE---CCe--eecCCCCC
Q 013832 31 VWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-------IPPGYHQYKFCV---DGE--WRHDEHQP 92 (435)
Q Consensus 31 ~w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-------L~~g~~~ykF~V---Dg~--w~~d~~~~ 92 (435)
+|...|++|+|+|+||+|... .+|++. ..|+|++.++ ++.| ..|||.| ||. ++.||-..
T Consensus 120 vWAP~A~~V~LvGdFN~W~~~~~~M~~~--~~GvWe~~ip~~~g~~~~~~G-~~Yky~i~~~~g~~~~r~dpya~ 191 (758)
T PLN02447 120 EWAPGAKAAALIGDFNNWNPNAHWMTKN--EFGVWEIFLPDADGSPAIPHG-SRVKIRMETPDGRWVDRIPAWIK 191 (758)
T ss_pred EECCCCCEEEEEEecCCCCCCccCceeC--CCCEEEEEECCccccccCCCC-CEEEEEEEeCCCcEEeecCchHh
Confidence 577779999999999999875 589874 4799999986 3445 2566666 354 45676554
No 227
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.60 E-value=0.011 Score=47.85 Aligned_cols=47 Identities=23% Similarity=0.493 Sum_probs=38.4
Q ss_pred CCCcEEEEEeecC---CCCCC--CCCccccCCCCeEEEEEEcCC--c-eEEEEEEE
Q 013832 34 YGGRSVFLSGSFN---RWSEL--LPMSPVEGCPTVFQIIWSIPP--G-YHQYKFCV 81 (435)
Q Consensus 34 ~~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~L~~--g-~~~ykF~V 81 (435)
..|++++|+|+.. +|++. ++|...+ ..+.|++.+.+|+ | .++|||++
T Consensus 11 ~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~-~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 11 QFGQSVYVVGSHPELGNWDPAKALRLNTSN-SYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred CCCCEEEEEeCcHHhCCcChhcCccccCCC-CCCcEEEEEEecCCCCCeEEEEEEE
Confidence 3589999999965 89854 6887642 3688999999999 7 89999998
No 228
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.57 E-value=0.0077 Score=50.99 Aligned_cols=60 Identities=22% Similarity=0.426 Sum_probs=43.7
Q ss_pred EEE-EecCCCcEEEEEeecCCCC---C--CCCCcccc-CCCCeEEEEEE-cCCceEEEEEEECCeeecCC
Q 013832 28 MRF-VWPYGGRSVFLSGSFNRWS---E--LLPMSPVE-GCPTVFQIIWS-IPPGYHQYKFCVDGEWRHDE 89 (435)
Q Consensus 28 ~~f-~w~~~~~~V~l~Gsf~~W~---~--~~~m~~~~-~~~~~~~~~~~-L~~g~~~ykF~VDg~w~~d~ 89 (435)
++| +|...|++|.|+. |++|. + .++|.+.+ +..|+|.+.++ +.+|. .|+|.|+|.|.-++
T Consensus 9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p~~ 76 (119)
T cd02852 9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEPEQ 76 (119)
T ss_pred EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCCCCc
Confidence 455 6777799999999 88886 2 24676531 23699999985 67775 79999999765443
No 229
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=96.46 E-value=0.019 Score=46.83 Aligned_cols=54 Identities=20% Similarity=0.399 Sum_probs=41.8
Q ss_pred eeEEEEec----CCCcEEEEEeecC---CCCCC--CCCccccCCCCeEEEEEEcCCc-eEEEEEEE
Q 013832 26 IPMRFVWP----YGGRSVFLSGSFN---RWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (435)
Q Consensus 26 ~~~~f~w~----~~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~~~ykF~V 81 (435)
|+++|.-. ..++.++|+|+-. +|+.. ++|... ....|++.+.||.| ..+|||++
T Consensus 1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~--~~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT--AYPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC--CCCeEEEEEEcCCCCeEEEEEEE
Confidence 45666632 3479999999855 89964 567653 45789999999999 99999988
No 230
>PRK14706 glycogen branching enzyme; Provisional
Probab=96.42 E-value=0.0059 Score=66.40 Aligned_cols=63 Identities=33% Similarity=0.639 Sum_probs=46.0
Q ss_pred EEE-EecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEEc-CCceEEEEEEECC---ee--ecCCCCCe
Q 013832 28 MRF-VWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSI-PPGYHQYKFCVDG---EW--RHDEHQPF 93 (435)
Q Consensus 28 ~~f-~w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L-~~g~~~ykF~VDg---~w--~~d~~~~~ 93 (435)
++| +|...|++|+|+|+||+|... .||.+. ..|+|++.++- .+| ..|||.|++ .+ +.||-...
T Consensus 40 v~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~--~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~~ 110 (639)
T PRK14706 40 VRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL--DFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGSF 110 (639)
T ss_pred EEEEEECCCCCEEEEEEecCCccccccccccc--CCCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceEE
Confidence 455 566679999999999999875 589875 46999999864 455 468888854 43 56665543
No 231
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.34 E-value=0.0082 Score=66.51 Aligned_cols=63 Identities=27% Similarity=0.556 Sum_probs=45.1
Q ss_pred EEEE-ecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCc-eEEEEEEEC-Cee--ecCCCC
Q 013832 28 MRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCVD-GEW--RHDEHQ 91 (435)
Q Consensus 28 ~~f~-w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g-~~~ykF~VD-g~w--~~d~~~ 91 (435)
++|+ |...|++|+|+|+||+|... .+|.+. ...|+|+++++ +++| .|.|++..+ |.| ..||-.
T Consensus 133 v~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~-~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa 202 (726)
T PRK05402 133 VRFAVWAPNARRVSVVGDFNGWDGRRHPMRLR-GESGVWELFIPGLGEGELYKFEILTADGELLLKADPYA 202 (726)
T ss_pred EEEEEECCCCCEEEEEEEcCCCCCccccceEc-CCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCce
Confidence 4554 44569999999999999864 589874 25799999985 6677 777777665 454 344444
No 232
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=95.98 E-value=0.06 Score=44.14 Aligned_cols=54 Identities=28% Similarity=0.535 Sum_probs=39.0
Q ss_pred EEEEecC-CCcEEEEEeec---CCCCCC--CCCcccc-CCCCeEEEEEEcCCc-eEEEEEEE
Q 013832 28 MRFVWPY-GGRSVFLSGSF---NRWSEL--LPMSPVE-GCPTVFQIIWSIPPG-YHQYKFCV 81 (435)
Q Consensus 28 ~~f~w~~-~~~~V~l~Gsf---~~W~~~--~~m~~~~-~~~~~~~~~~~L~~g-~~~ykF~V 81 (435)
+.+.++- .|++++|+|+- -+|+.. ++|.... .....|++.+.+|++ .++|||+|
T Consensus 4 f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 4 FKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred EEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 3344433 48999999984 479755 5775421 223489999999988 79999999
No 233
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=95.70 E-value=0.15 Score=42.77 Aligned_cols=51 Identities=20% Similarity=0.389 Sum_probs=38.6
Q ss_pred EecCCCcEEEEEee---cCCCCCC--CCCcccc-----CCCCeEEEEEEcCCc----eEEEEEEE
Q 013832 31 VWPYGGRSVFLSGS---FNRWSEL--LPMSPVE-----GCPTVFQIIWSIPPG----YHQYKFCV 81 (435)
Q Consensus 31 ~w~~~~~~V~l~Gs---f~~W~~~--~~m~~~~-----~~~~~~~~~~~L~~g----~~~ykF~V 81 (435)
+.-..+++++|+|+ +-+|+.. ++|.... .....|++.+.||++ ..+|||+.
T Consensus 10 ~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 10 TFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred eecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 34457899999998 5589965 4676531 134579999999996 79999998
No 234
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=95.67 E-value=0.035 Score=44.00 Aligned_cols=61 Identities=23% Similarity=0.273 Sum_probs=42.9
Q ss_pred EEEE-ecCCCcEEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEEC-CeeecCCCCCee
Q 013832 28 MRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVD-GEWRHDEHQPFI 94 (435)
Q Consensus 28 ~~f~-w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykF~VD-g~w~~d~~~~~~ 94 (435)
++|. |...|++|.|.... |. .++|.+. .+|+|+++++..+|. .|+|.|+ +..+.||.....
T Consensus 10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~--~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~~ 72 (85)
T cd02853 10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRD--GDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRFQ 72 (85)
T ss_pred EEEEEeCCCCCEEEEEecC--CC-cccCccC--CCcEEEEEeCCCCCC-eEEEEECCCcCCCCCccccC
Confidence 3444 66669999999743 54 3789874 579999998643774 4777776 457888877653
No 235
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=95.57 E-value=0.024 Score=60.61 Aligned_cols=60 Identities=25% Similarity=0.337 Sum_probs=47.3
Q ss_pred EE-EecCCCcEEEEEeecCCCCCCCCCccccCCCCeEEEEEE-cCCceEEEEEEECC-eeecCCCCCeee
Q 013832 29 RF-VWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDG-EWRHDEHQPFIS 95 (435)
Q Consensus 29 ~f-~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VDg-~w~~d~~~~~~~ 95 (435)
+| +|...|++|.|.+. +. .++|.+. .+|+|+++++ +.+| +.|+|.||| ....||......
T Consensus 2 ~FrlwAP~A~~V~L~l~---~~-~~~m~k~--~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~ 64 (542)
T TIGR02402 2 RFRLWAPTAASVKLRLN---GA-LHAMQRL--GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQP 64 (542)
T ss_pred EEEEECCCCCEEEEEeC---CC-EEeCeEC--CCCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccc
Confidence 45 57777999999973 33 4799884 5799999996 7788 789999999 678898887643
No 236
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=95.13 E-value=0.04 Score=59.89 Aligned_cols=64 Identities=30% Similarity=0.560 Sum_probs=45.6
Q ss_pred EEE-EecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCceEEEEEEEC---Ce--eecCCCCCe
Q 013832 28 MRF-VWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD---GE--WRHDEHQPF 93 (435)
Q Consensus 28 ~~f-~w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VD---g~--w~~d~~~~~ 93 (435)
++| +|...|++|.|+|+||+|... .+|.+. ...|+|++.++ +.+|. .|||.|+ |. ++.||-.-.
T Consensus 30 ~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~-~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~~ 101 (613)
T TIGR01515 30 TRFCVWAPNAREVRVAGDFNYWDGREHPMRRR-NDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAFY 101 (613)
T ss_pred EEEEEECCCCCEEEEEEecCCCCCceecceEe-cCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEee
Confidence 344 466669999999999999865 488764 24699999986 45664 5777773 54 466776543
No 237
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=94.73 E-value=0.1 Score=41.66 Aligned_cols=63 Identities=22% Similarity=0.503 Sum_probs=38.1
Q ss_pred eEEEEecC------CCcEEEEEeecCCCCCC--CCCcccc--CCCCeEEEEEEcCCceEEEEEEE-CC--eeecCC
Q 013832 27 PMRFVWPY------GGRSVFLSGSFNRWSEL--LPMSPVE--GCPTVFQIIWSIPPGYHQYKFCV-DG--EWRHDE 89 (435)
Q Consensus 27 ~~~f~w~~------~~~~V~l~Gsf~~W~~~--~~m~~~~--~~~~~~~~~~~L~~g~~~ykF~V-Dg--~w~~d~ 89 (435)
++++.|.. ++.+|++.+.|++|+.. ++|.++. ...+.|++++.+|..-|+..|+- || .|-.+.
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~wDNN~ 78 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDGAGNWDNNN 78 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-SSS-EESTT
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCCCCcEeCCC
Confidence 45666632 46899999999999965 4676641 12699999999999877888877 54 575443
No 238
>PRK05402 glycogen branching enzyme; Provisional
Probab=94.56 E-value=0.067 Score=59.36 Aligned_cols=61 Identities=10% Similarity=-0.028 Sum_probs=43.0
Q ss_pred EEEecCCCcEEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCc-eEEEEEEECCee--ecCCCC
Q 013832 29 RFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVDGEW--RHDEHQ 91 (435)
Q Consensus 29 ~f~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g-~~~ykF~VDg~w--~~d~~~ 91 (435)
-=+|...|++|+|+|+||+ ....||.+. ...|.|++.+++..| .|+|...-||+| ..||-.
T Consensus 32 f~vwaP~A~~V~vvgdfn~-~~~~~m~~~-~~~G~w~~~ip~~~g~~YKy~i~~~g~~~~k~DPya 95 (726)
T PRK05402 32 VRALLPGAEEVWVILPGGG-RKLAELERL-HPRGLFAGVLPRKGPFDYRLRVTWGGGEQLIDDPYR 95 (726)
T ss_pred EEEECCCCeEEEEEeecCC-CccccceEc-CCCceEEEEecCCCCCCeEEEEEeCCceeEeccccc
Confidence 3467778999999999997 333589875 357999999997777 544443337854 445433
No 239
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=94.52 E-value=0.068 Score=54.64 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=41.5
Q ss_pred CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (435)
Q Consensus 363 ~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~ 412 (435)
.+.+++++++|.+++..+.+.+. .+||+|+ |+++|+|++.+|+..+..
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 334 APTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred cCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHhc
Confidence 56789999999999999888765 4889986 999999999999987653
No 240
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=94.29 E-value=0.45 Score=40.57 Aligned_cols=84 Identities=18% Similarity=0.271 Sum_probs=55.2
Q ss_pred eeEEEEec----CCCcEEEEEeecCCCCCC-----CCCccccCCCCeEEEEEEcCCc-eEEEEEEECCe-----------
Q 013832 26 IPMRFVWP----YGGRSVFLSGSFNRWSEL-----LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVDGE----------- 84 (435)
Q Consensus 26 ~~~~f~w~----~~~~~V~l~Gsf~~W~~~-----~~m~~~~~~~~~~~~~~~L~~g-~~~ykF~VDg~----------- 84 (435)
+.|||.|+ .....+.|.|+.|+...+ ..|.+.. ...+|..++.||.+ +-.|+|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~-gTDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r 80 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLP-GTDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWR 80 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-T-TSSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHH
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCC-CCceEEEEEEECcccEEEEEEEecCcccchhHHHHHH
Confidence 46899999 345779999999999643 3677773 56899999999999 99999997533
Q ss_pred -----eecCCCCCee-eCC---CCCeeeEEEecCC
Q 013832 85 -----WRHDEHQPFI-SSE---YGIVNTVLLATEP 110 (435)
Q Consensus 85 -----w~~d~~~~~~-~d~---~G~~nnvl~v~~~ 110 (435)
=..||-||.. ... .|..-+++...+.
T Consensus 81 ~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~Lp~A 115 (122)
T PF11806_consen 81 AILAQAQADPLNPRPWPNGAQDRGNAASVLELPDA 115 (122)
T ss_dssp HHGGG-B--TTSSSEEE-TT---SSEEEEEE-TTS
T ss_pred HHHhccCCCCCCCCCCCCCccccccccCceeCCCC
Confidence 3578988853 333 4788888887543
No 241
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.27 E-value=0.079 Score=52.15 Aligned_cols=95 Identities=14% Similarity=0.241 Sum_probs=70.6
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccC
Q 013832 278 GPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIG 357 (435)
Q Consensus 278 ~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g 357 (435)
.+...-..+...+.+...+.+-+++ ..+ +.+|+++..++.++..
T Consensus 290 ~~~~~~~~al~~~~~~~~~~~~~~~---~~~---~~~g~v~~~~~~~~~~------------------------------ 333 (386)
T COG4175 290 TPGDGPRVALKLLRDEGREYGYAVD---RGN---KFVGVVSIDSLVKAAL------------------------------ 333 (386)
T ss_pred ccccccchhhhhhhhccchhhHHHh---ccC---ceeeEEeccchhcccc------------------------------
Confidence 3444555677788887777777774 233 6899999888765400
Q ss_pred CCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832 358 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 412 (435)
Q Consensus 358 ~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~ 412 (435)
..++.++.+++++.+.+..+.+.. ..+||||++|+++|+|++..++.++..
T Consensus 334 ---~~~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 334 ---IDDVLTVDADTPLSEILARIRQAP-CPVAVVDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred ---cccccccCccchHHHHHHHHhcCC-CceeEEcCCCcEEEEecHHHHHHHHhc
Confidence 125667899999999888876654 468899999999999999999987653
No 242
>PLN02950 4-alpha-glucanotransferase
Probab=94.01 E-value=0.33 Score=54.94 Aligned_cols=69 Identities=29% Similarity=0.567 Sum_probs=48.4
Q ss_pred CCceeeEEEEecC---CCcEEEEEeecC---CCCCC--CCCcccc-CCCCeEEEEEEcCCc-eEEEEEEE---CCe---e
Q 013832 22 DTVLIPMRFVWPY---GGRSVFLSGSFN---RWSEL--LPMSPVE-GCPTVFQIIWSIPPG-YHQYKFCV---DGE---W 85 (435)
Q Consensus 22 ~~~~~~~~f~w~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~-~~~~~~~~~~~L~~g-~~~ykF~V---Dg~---w 85 (435)
.+..+.++|.-++ -|++|+|+|+-. +|+.. ++|+... .....|++++.||.| ..+|||++ +|. |
T Consensus 5 ~~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g~vi~W 84 (909)
T PLN02950 5 SLKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYVVDDNKNVLRW 84 (909)
T ss_pred CCCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEEEeCCCceeee
Confidence 3445667776653 489999999865 69865 5786531 123489999999998 89999995 343 6
Q ss_pred ecCCC
Q 013832 86 RHDEH 90 (435)
Q Consensus 86 ~~d~~ 90 (435)
...++
T Consensus 85 E~g~N 89 (909)
T PLN02950 85 EAGKK 89 (909)
T ss_pred ecCCC
Confidence 55553
No 243
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=93.43 E-value=0.17 Score=55.06 Aligned_cols=63 Identities=19% Similarity=0.298 Sum_probs=44.5
Q ss_pred EEE-EecCCCcEEEEEeecCCCCC-----CCCCccccCCCCeEEEEEE-cCCc-eEEEEEEECCe--eecCCCCCe
Q 013832 28 MRF-VWPYGGRSVFLSGSFNRWSE-----LLPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCVDGE--WRHDEHQPF 93 (435)
Q Consensus 28 ~~f-~w~~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~~~~~~~~~-L~~g-~~~ykF~VDg~--w~~d~~~~~ 93 (435)
++| +|...|++|.|++ |++|.. .++|.+. ..|+|++.++ +.+| .|.|++..+|. +..||-...
T Consensus 21 ~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~--~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DPya~~ 93 (605)
T TIGR02104 21 TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRG--ENGVWSAVLEGDLHGYFYTYQVCINGKWRETVDPYAKA 93 (605)
T ss_pred eEEEEECCCCCEEEEEE-EcCCCCCccceEEecccC--CCCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCCCcce
Confidence 455 5666799999998 888853 3588773 5799999997 4566 55555555665 478887654
No 244
>PLN02950 4-alpha-glucanotransferase
Probab=92.64 E-value=0.85 Score=51.74 Aligned_cols=71 Identities=20% Similarity=0.372 Sum_probs=52.4
Q ss_pred CCceeeEEEEecC----CCcEEEEEee---cCCCCCC--CCCccccCCCCeEEEEEEcCCc--eEEEEEEE---CCe--e
Q 013832 22 DTVLIPMRFVWPY----GGRSVFLSGS---FNRWSEL--LPMSPVEGCPTVFQIIWSIPPG--YHQYKFCV---DGE--W 85 (435)
Q Consensus 22 ~~~~~~~~f~w~~----~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~L~~g--~~~ykF~V---Dg~--w 85 (435)
.+..++++|.-.. .|++|+|+|+ .-+|+.. ++|+.. ....|++.+.+|++ ..+|||++ +|. |
T Consensus 149 ~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~--~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~W 226 (909)
T PLN02950 149 APDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYT--GDSIWEADCLVPKSDFPIKYKYALQTAEGLVSL 226 (909)
T ss_pred CCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccC--CCCcEEEEEEecCCCceEEEEEEEEcCCCceEE
Confidence 4456788888532 4899999998 4489965 466653 46889999999988 59999998 443 8
Q ss_pred ecCCCCCee
Q 013832 86 RHDEHQPFI 94 (435)
Q Consensus 86 ~~d~~~~~~ 94 (435)
...++.-..
T Consensus 227 E~g~NR~~~ 235 (909)
T PLN02950 227 ELGVNRELS 235 (909)
T ss_pred eeCCCceee
Confidence 766666543
No 245
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=90.92 E-value=0.4 Score=46.03 Aligned_cols=116 Identities=16% Similarity=0.243 Sum_probs=66.4
Q ss_pred CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhccc--CCC---ccc-cccccc
Q 013832 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHC--SSS---LPI-LKLPIC 345 (435)
Q Consensus 272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~--~~~---~~~-~~~~v~ 345 (435)
+.++.|.. -+.||+++ ..++.|++ .| +++-+-+..+|++.-+..|-.. +.+ ... ...++.
T Consensus 187 kTivfVTH--DidEA~kL-----adri~vm~----~G---~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~ 252 (309)
T COG1125 187 KTIVFVTH--DIDEALKL-----ADRIAVMD----AG---EIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVA 252 (309)
T ss_pred CEEEEEec--CHHHHHhh-----hceEEEec----CC---eEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHH
Confidence 34444443 35566654 35788884 46 7999999988886543332110 000 000 001111
Q ss_pred cccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 013832 346 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 409 (435)
Q Consensus 346 ~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~ 409 (435)
+.+.... . ....+ +.......+++..+...+.+.+||||++|+++|.+++.+|+..
T Consensus 253 ~~~~~~~---~--~~~~~---~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 253 DAVRRGE---P--ADGEP---LLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred Hhhcccc---c--ccCCc---cccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 1111000 0 00111 2333445558888899999999999999999999999999763
No 246
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=90.70 E-value=1.1 Score=46.45 Aligned_cols=87 Identities=17% Similarity=0.264 Sum_probs=58.0
Q ss_pred CceeeEEEEecCC-C-------cEEEEEee--cC--CCCCCCCCccccCCCCeEEEEEEcCCc-eEEEEEEEC---C---
Q 013832 23 TVLIPMRFVWPYG-G-------RSVFLSGS--FN--RWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVD---G--- 83 (435)
Q Consensus 23 ~~~~~~~f~w~~~-~-------~~V~l~Gs--f~--~W~~~~~m~~~~~~~~~~~~~~~L~~g-~~~ykF~VD---g--- 83 (435)
...+.+||.|+++ + ++|+|-++ .+ .+....+|++. ....+|..++.||.. +-.|+|+++ .
T Consensus 36 ~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl-~~tDvW~~~~~~p~~~r~sY~~~~~~~~~~~~ 114 (411)
T PRK10439 36 DGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRI-AGTDVWQWSTELSANWRGSYCFIPTERDDIFS 114 (411)
T ss_pred CCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhcc-CCCceEEEEEEECcccEEEEEEEecccccccc
Confidence 4568999999874 2 35888432 22 13333478887 457899999999999 999999993 1
Q ss_pred ---------e------e-------ecCCCCCee-eCCCCCeeeEEEecCC
Q 013832 84 ---------E------W-------RHDEHQPFI-SSEYGIVNTVLLATEP 110 (435)
Q Consensus 84 ---------~------w-------~~d~~~~~~-~d~~G~~nnvl~v~~~ 110 (435)
. | ..||.||.. .+..|+-.|+|.+...
T Consensus 115 ~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~lp~a 164 (411)
T PRK10439 115 AFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEMPQA 164 (411)
T ss_pred ccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccCCCC
Confidence 0 2 368888753 3444554577777543
No 247
>PLN02316 synthase/transferase
Probab=89.96 E-value=0.86 Score=52.13 Aligned_cols=66 Identities=17% Similarity=0.316 Sum_probs=50.5
Q ss_pred eEEEEecC------CCcEEEEEeecCCCCCC---CCCccccCCCCeEEEEEEcCCceEEEEEEE-CCe--eecCCCCC
Q 013832 27 PMRFVWPY------GGRSVFLSGSFNRWSEL---LPMSPVEGCPTVFQIIWSIPPGYHQYKFCV-DGE--WRHDEHQP 92 (435)
Q Consensus 27 ~~~f~w~~------~~~~V~l~Gsf~~W~~~---~~m~~~~~~~~~~~~~~~L~~g~~~ykF~V-Dg~--w~~d~~~~ 92 (435)
++++.|+. +..+|.|.|-||+|+.. .+|.|.+..++.|++.+.+|+.-|..-|+. ||. |-++..+-
T Consensus 155 ~~~v~~n~~~~~L~~~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldfVf~~g~~~yDNN~~~D 232 (1036)
T PLN02316 155 DIEVYLNRSLSTLANEPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQNVYDNNDHKD 232 (1036)
T ss_pred eeEEEEcCCCCccCCCCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEEEEeCCccccccCCCCc
Confidence 46666653 34789999999999865 367777555788999999999999999998 764 66555553
No 248
>PLN02960 alpha-amylase
Probab=88.70 E-value=0.39 Score=53.55 Aligned_cols=53 Identities=26% Similarity=0.392 Sum_probs=39.9
Q ss_pred EEEEecCCCcEEEEEeecCCCCCCC-CCc-----cccCCCCeEEEEEE--cCCc----e---EEEEEEEC
Q 013832 28 MRFVWPYGGRSVFLSGSFNRWSELL-PMS-----PVEGCPTVFQIIWS--IPPG----Y---HQYKFCVD 82 (435)
Q Consensus 28 ~~f~w~~~~~~V~l~Gsf~~W~~~~-~m~-----~~~~~~~~~~~~~~--L~~g----~---~~ykF~VD 82 (435)
.-..|..+|+.++|+|+||||.++. +|. ++ .=|+|.++++ |..| . -+|.|..|
T Consensus 131 ~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 131 DFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHD--DFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred EEEEEcCCceeEEEeecccCCCcccchhhccccccc--ccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 3457999999999999999999874 443 32 3589999985 6666 2 36778775
No 249
>PLN02316 synthase/transferase
Probab=88.54 E-value=1.9 Score=49.40 Aligned_cols=68 Identities=15% Similarity=0.333 Sum_probs=49.1
Q ss_pred eeEEEEecC------CCcEEEEEeecCCCCCCC----CCcccc-CCCCeEEEEEEcCCceEEEEEEE-CC------eeec
Q 013832 26 IPMRFVWPY------GGRSVFLSGSFNRWSELL----PMSPVE-GCPTVFQIIWSIPPGYHQYKFCV-DG------EWRH 87 (435)
Q Consensus 26 ~~~~f~w~~------~~~~V~l~Gsf~~W~~~~----~m~~~~-~~~~~~~~~~~L~~g~~~ykF~V-Dg------~w~~ 87 (435)
-++++.|+. ++.+|++.|.||+|.... .|.+.+ +.++.|.+++.+|+.-|-.-|+. || .|-.
T Consensus 329 ~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg~~~~~~~yDN 408 (1036)
T PLN02316 329 DTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADGPPGNARNYDN 408 (1036)
T ss_pred CEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecCCccccccccc
Confidence 467888862 368999999999999642 233333 24568899999999999999998 66 4555
Q ss_pred CCCCCe
Q 013832 88 DEHQPF 93 (435)
Q Consensus 88 d~~~~~ 93 (435)
...+-+
T Consensus 409 n~~~Dy 414 (1036)
T PLN02316 409 NGRQDF 414 (1036)
T ss_pred CCCcce
Confidence 554443
No 250
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=87.79 E-value=0.75 Score=49.96 Aligned_cols=62 Identities=16% Similarity=0.212 Sum_probs=52.9
Q ss_pred cCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCC--cEEEEEeHHHHHHHHhhccccc
Q 013832 356 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDND--SLLDIYCRSDITALAKDKAYAH 417 (435)
Q Consensus 356 ~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g--~lvGiis~~DI~~~~~~~~~~~ 417 (435)
+.+.|.+++..+..+.+..|..+.+....++.+|+||+.+ -|+|.++|+.|..+++.+.-.+
T Consensus 590 VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig~~ 653 (931)
T KOG0476|consen 590 VEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIGPE 653 (931)
T ss_pred eeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcCcc
Confidence 4567889999999999999999988877799999998643 6899999999999998755443
No 251
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=87.45 E-value=1 Score=49.77 Aligned_cols=54 Identities=22% Similarity=0.440 Sum_probs=39.0
Q ss_pred EEE-EecCCCcEEEEEeecCCCCC----CCCCccccCCCCeEEEEEE-cCCceEEEEEEECCee
Q 013832 28 MRF-VWPYGGRSVFLSGSFNRWSE----LLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW 85 (435)
Q Consensus 28 ~~f-~w~~~~~~V~l~Gsf~~W~~----~~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VDg~w 85 (435)
++| +|...|++|.|+ -|++|.. .++|.+ +..|+|.+.++ +.+|. .|+|.|+|.|
T Consensus 16 ~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~--~~~gvW~~~v~~~~~g~-~Y~yrv~g~~ 75 (688)
T TIGR02100 16 VNFALFSANAEKVELC-LFDAQGEKEEARLPLPE--RTDDIWHGYLPGAQPGQ-LYGYRVHGPY 75 (688)
T ss_pred EEEEEECCCCCEEEEE-EEcCCCCceeeEEeccc--CCCCEEEEEECCCCCCC-EEEEEEeeee
Confidence 455 456669999986 5665542 357876 35799999996 67776 4999999854
No 252
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=84.07 E-value=2.1 Score=49.52 Aligned_cols=63 Identities=10% Similarity=0.111 Sum_probs=43.7
Q ss_pred EEE-EecCCCcEEEEEe-ecCCCCC---CCCCccccCCCCeEEEEEE-cCCc-----eEEEEEEECC----eeecCCCCC
Q 013832 28 MRF-VWPYGGRSVFLSG-SFNRWSE---LLPMSPVEGCPTVFQIIWS-IPPG-----YHQYKFCVDG----EWRHDEHQP 92 (435)
Q Consensus 28 ~~f-~w~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~~~~~~~~~-L~~g-----~~~ykF~VDg----~w~~d~~~~ 92 (435)
++| +|...|++|.|++ ++++|.. .++|.+. ..|+|++.++ +.+| -+.|+|.|++ ....||-..
T Consensus 329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~--~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~ 406 (1111)
T TIGR02102 329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKG--DRGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK 406 (1111)
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccC--CCCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence 445 5777799999998 4556654 4689873 5899999987 4432 3678888865 345666554
No 253
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=83.68 E-value=13 Score=40.77 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=46.1
Q ss_pred ecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCC-CeEEEeeehHHHHHHHHH
Q 013832 173 YELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSK-ARFVGVLSASDFILILRE 231 (435)
Q Consensus 173 ~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~-~~~vGilT~~D~i~il~~ 231 (435)
-++|- .+|..+..+.|..|--+++....++++|++|+.+ .-++|.+..+.+...|..
T Consensus 591 E~iMV--~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 591 EHIMV--TDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred eeecc--ccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 34453 4677889999999999999888899999999754 357899999999887764
No 254
>PRK03705 glycogen debranching enzyme; Provisional
Probab=83.68 E-value=1.7 Score=47.70 Aligned_cols=54 Identities=19% Similarity=0.417 Sum_probs=39.4
Q ss_pred EEE-EecCCCcEEEEEeecCCCC--CCCCCccccCCCCeEEEEEE-cCCceEEEEEEECCee
Q 013832 28 MRF-VWPYGGRSVFLSGSFNRWS--ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW 85 (435)
Q Consensus 28 ~~f-~w~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VDg~w 85 (435)
+.| +|...|++|.|+. |+++. ..++|.+. ..|+|++.++ +.+|. .|+|.|+|.|
T Consensus 21 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~--~~gvW~~~v~~~~~G~-~Y~yrv~g~~ 78 (658)
T PRK03705 21 VNFTLFSAHAERVELCV-FDENGQEQRYDLPAR--SGDIWHGYLPGARPGL-RYGYRVHGPW 78 (658)
T ss_pred EEEEEECCCCCEEEEEE-EcCCCCeeeEeeeec--cCCEEEEEECCCCCCC-EEEEEEcccc
Confidence 456 5666799999997 77653 23688763 5799999986 55664 5999999854
No 255
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=79.93 E-value=7.2 Score=32.05 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=38.8
Q ss_pred ceeeEEEEecC-CCcEEEEEeecCC--CCC-CCCCccccCCC---CeEEEEEEcCCceEEEEEEE
Q 013832 24 VLIPMRFVWPY-GGRSVFLSGSFNR--WSE-LLPMSPVEGCP---TVFQIIWSIPPGYHQYKFCV 81 (435)
Q Consensus 24 ~~~~~~f~w~~-~~~~V~l~Gsf~~--W~~-~~~m~~~~~~~---~~~~~~~~L~~g~~~ykF~V 81 (435)
..+.+++.=+. ..++|.|.-.-+. |.. .++|.+.. .. ..|+++++++.|.+.|.|.+
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~-~~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDG-SDELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEee-eCCceeEEEEEEecCCcEEEEEEEE
Confidence 44666666543 3688888655432 232 36897763 33 35999999888999999999
No 256
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=79.23 E-value=4.1 Score=46.22 Aligned_cols=65 Identities=20% Similarity=0.215 Sum_probs=42.3
Q ss_pred EEE-EecCCCcEEEEEeecCCCC--CCCCCccccCCCCeEEEEEE-cCCceEEEEEEEC------Ce----eecCCCCCe
Q 013832 28 MRF-VWPYGGRSVFLSGSFNRWS--ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD------GE----WRHDEHQPF 93 (435)
Q Consensus 28 ~~f-~w~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VD------g~----w~~d~~~~~ 93 (435)
++| +|...|++|.|++.+++|. ..++|.+. ...|+|++.++ ...|. .|+|.|+ |+ +..||-...
T Consensus 137 v~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~-~~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~a 214 (898)
T TIGR02103 137 VTFRLWAPTAQQVKLHIYSASKKVETTLPMTRD-STSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSVS 214 (898)
T ss_pred EEEEEECCCCCEEEEEEEcCCCCccceEeCccC-CCCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcce
Confidence 344 5777799999997766663 23588764 24799999986 44563 3566664 53 366776643
Q ss_pred e
Q 013832 94 I 94 (435)
Q Consensus 94 ~ 94 (435)
.
T Consensus 215 l 215 (898)
T TIGR02103 215 L 215 (898)
T ss_pred E
Confidence 3
No 257
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=79.18 E-value=3.8 Score=41.94 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=39.8
Q ss_pred CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHH
Q 013832 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILR 230 (435)
Q Consensus 181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~ 230 (435)
.+.++++++++.+++..+.+.+.. +||+|+ |+++|+|+..+++..|.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~--~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 334 APTVINPDTLMRDVLAARHRTGGA-ILLVEN--GRIVGVIGDDNIYHALL 380 (382)
T ss_pred cCcccCCCCcHHHHHHHHhcCCCC-eEEeeC--CeEEEEEeHHHHHHHHh
Confidence 356789999999999999987755 778873 89999999999987764
No 258
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=73.34 E-value=5.1 Score=38.68 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=34.2
Q ss_pred CccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHH
Q 013832 188 DLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILI 228 (435)
Q Consensus 188 ~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~i 228 (435)
.....+|+..+...+...+||+|++ |+++|.+|..+++..
T Consensus 269 ~~~~~~~ls~~~~~~~~~~~Vvd~~-g~~~G~vt~~~l~~~ 308 (309)
T COG1125 269 GFVDRDALSDFLARGRSVLPVVDED-GRPLGTVTRADLLDE 308 (309)
T ss_pred chhhHHHHHHHHhcCCceeEEECCC-CcEeeEEEHHHHhhh
Confidence 3445679999999999999999975 899999999998753
No 259
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=73.29 E-value=7.6 Score=38.65 Aligned_cols=89 Identities=21% Similarity=0.402 Sum_probs=66.9
Q ss_pred HHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhcccccCCCccCC
Q 013832 192 KQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFP 271 (435)
Q Consensus 192 ~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~ 271 (435)
..|.+.+.+.+...+-+++ ..++++|+++..+.+.. .+.
T Consensus 296 ~~al~~~~~~~~~~~~~~~-~~~~~~g~v~~~~~~~~----------------------------------------~~~ 334 (386)
T COG4175 296 RVALKLLRDEGREYGYAVD-RGNKFVGVVSIDSLVKA----------------------------------------ALI 334 (386)
T ss_pred chhhhhhhhccchhhHHHh-ccCceeeEEeccchhcc----------------------------------------ccc
Confidence 4677888888777777777 45679999988775431 023
Q ss_pred CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh
Q 013832 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR 328 (435)
Q Consensus 272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~ 328 (435)
.++.++.+++++.+.+..+.+... .+||++ +++ +++|+++...++.++..
T Consensus 335 ~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvd---e~~---r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 335 DDVLTVDADTPLSEILARIRQAPC-PVAVVD---EDG---RYVGIISRGELLEALAR 384 (386)
T ss_pred ccccccCccchHHHHHHHHhcCCC-ceeEEc---CCC---cEEEEecHHHHHHHHhc
Confidence 567788899999998888776544 577785 355 89999999999998864
No 260
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=73.15 E-value=15 Score=28.89 Aligned_cols=62 Identities=21% Similarity=0.250 Sum_probs=41.8
Q ss_pred CCceeeEEEEecCCC---cEEEEEeec-CCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEE-C-CeeecC
Q 013832 22 DTVLIPMRFVWPYGG---RSVFLSGSF-NRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCV-D-GEWRHD 88 (435)
Q Consensus 22 ~~~~~~~~f~w~~~~---~~V~l~Gsf-~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykF~V-D-g~w~~d 88 (435)
.+...-+.+.+.+|+ .+|.|.++= .+|. +|++. -..+|++.-.++.|-+.+|+.. | |+|...
T Consensus 10 ~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~---~m~r~--wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 10 NPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWI---PMKRS--WGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp BTTEEEEEEEECCTTS-EEEEEEEETTSSS-E---E-EEE--CTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred CCcEEEEEEEEcCCCccEEEEEEEeCCCCCce---EeecC--cCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 355667777777663 679999544 4474 68875 4689999887778899999988 7 887764
No 261
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=71.33 E-value=6.4 Score=36.11 Aligned_cols=72 Identities=25% Similarity=0.602 Sum_probs=39.1
Q ss_pred CCCCCCCCccCCCCCCCCCCceeeEEEEecCCCcEEEEEeecCCCCCCCCCccccCCCCeEEEEEEc-CCceEEEEEE--
Q 013832 4 GQMFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSI-PPGYHQYKFC-- 80 (435)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L-~~g~~~ykF~-- 80 (435)
|..|-..|+-+++.... +-..+.|..++. ..|+. +||.+. .+..|+..+.+ .+|.|+|+..
T Consensus 26 Ge~v~V~Adif~DGHD~-----l~A~l~~r~~~~--------~~w~~-vpM~~~--gnDrW~a~f~~~~~G~~~f~VeAW 89 (187)
T PF11896_consen 26 GEPVPVSADIFRDGHDA-----LAAELLWRHPGE--------REWQE-VPMTPL--GNDRWEASFTPDRPGRYEFRVEAW 89 (187)
T ss_dssp T-EEEEEEEE--SSSS------EEEEEEEE-TTS---------B-----B-EES--TS-EEEEEEE--SSEEEEEEEEEE
T ss_pred CCeEEEEEEEEecCCCc-----EEEEEEEECCCC--------Cccee-eccccC--CCCEEEEEEECCCceeEEEEEEEE
Confidence 44455556666665555 667777766543 23887 799985 58999999875 4689999876
Q ss_pred EC--CeeecCCCC
Q 013832 81 VD--GEWRHDEHQ 91 (435)
Q Consensus 81 VD--g~w~~d~~~ 91 (435)
+| +.|+++-..
T Consensus 90 ~D~faTW~~~~~k 102 (187)
T PF11896_consen 90 VDHFATWRHDLEK 102 (187)
T ss_dssp E-HHHHHHHHHHH
T ss_pred eccHHHHHHhhhh
Confidence 35 347665433
No 262
>PLN03244 alpha-amylase; Provisional
Probab=69.35 E-value=3.9 Score=45.32 Aligned_cols=53 Identities=26% Similarity=0.397 Sum_probs=39.0
Q ss_pred EEEEecCCCcEEEEEeecCCCCCCCC------CccccCCCCeEEEEEE--cCCc----e---EEEEEEEC
Q 013832 28 MRFVWPYGGRSVFLSGSFNRWSELLP------MSPVEGCPTVFQIIWS--IPPG----Y---HQYKFCVD 82 (435)
Q Consensus 28 ~~f~w~~~~~~V~l~Gsf~~W~~~~~------m~~~~~~~~~~~~~~~--L~~g----~---~~ykF~VD 82 (435)
.--.|..||.--+|+|+||||.++.- |.++ .=|+|.++++ |..| . -||.|.-|
T Consensus 134 ~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (872)
T PLN03244 134 DFMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHD--DYGYWFIILEDKLREGEEPDELYFQQYNYVDD 201 (872)
T ss_pred eeEeecCCcceeeeeccccCCCcccccccccccccc--ccceEEEEechhhhcCCCchhhhHhhhccccc
Confidence 34579899999999999999998732 3343 3589999985 6666 2 36777654
No 263
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=67.49 E-value=17 Score=43.08 Aligned_cols=54 Identities=15% Similarity=0.287 Sum_probs=40.5
Q ss_pred EEE-EecCCCcEEEEEeecCCCCCC----CCCccccCCCCeEEEEEE-cCCceEEEEEEECCee
Q 013832 28 MRF-VWPYGGRSVFLSGSFNRWSEL----LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW 85 (435)
Q Consensus 28 ~~f-~w~~~~~~V~l~Gsf~~W~~~----~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VDg~w 85 (435)
++| +|...|++|.|+ -|+.|... ++|.. +..++|.+.++ +.+|. .|+|.|+|.|
T Consensus 25 v~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~--~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 25 VNLALFSGAAERVEFC-LFDLWGVREEARIKLPG--RTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred EEEEEECCCCCEEEEE-EEECCCCCeeEEEECCC--CcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 566 455669999998 89988643 46643 45799999875 77886 6999999865
No 264
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=66.81 E-value=15 Score=30.76 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=44.3
Q ss_pred CCceeeEEEEecC-CCcEEEEE-eecCCC----CC-CCCCcccc--CCCCeEEEEEEcCCceEEEEEEE--CCe-eecCC
Q 013832 22 DTVLIPMRFVWPY-GGRSVFLS-GSFNRW----SE-LLPMSPVE--GCPTVFQIIWSIPPGYHQYKFCV--DGE-WRHDE 89 (435)
Q Consensus 22 ~~~~~~~~f~w~~-~~~~V~l~-Gsf~~W----~~-~~~m~~~~--~~~~~~~~~~~L~~g~~~ykF~V--Dg~-w~~d~ 89 (435)
....+.++|.=.. ..++|.|. |+-.+| .. ..+|.+.. +.-..|+++++++..+..|.|.| +|+ |..++
T Consensus 19 ~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~~~y~~ 98 (120)
T PF02903_consen 19 DGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELEDGGETYYYGE 98 (120)
T ss_dssp CTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEEETTEEEEEET
T ss_pred CCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEEeCCEEEEEeC
Confidence 4456777777754 47888885 676655 22 25787652 23457899999998889999988 343 54443
Q ss_pred C
Q 013832 90 H 90 (435)
Q Consensus 90 ~ 90 (435)
.
T Consensus 99 ~ 99 (120)
T PF02903_consen 99 R 99 (120)
T ss_dssp T
T ss_pred C
Confidence 3
No 265
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=66.40 E-value=4.2 Score=44.36 Aligned_cols=38 Identities=26% Similarity=0.430 Sum_probs=29.1
Q ss_pred EecCCCcEEEEEeecCCCCCCC-CCccccCCCCeEEEEEE
Q 013832 31 VWPYGGRSVFLSGSFNRWSELL-PMSPVEGCPTVFQIIWS 69 (435)
Q Consensus 31 ~w~~~~~~V~l~Gsf~~W~~~~-~m~~~~~~~~~~~~~~~ 69 (435)
.|..+++.|.++|+||+|.... .++.. ...|.|++.++
T Consensus 119 ewaP~a~~~s~~gd~n~W~~~~~~~~~k-~~~g~w~i~l~ 157 (757)
T KOG0470|consen 119 EWAPLAEAVSLIGDFNNWNPSSNELKPK-DDLGVWEIDLP 157 (757)
T ss_pred eecccccccccccccCCCCCcccccCcc-cccceeEEecC
Confidence 4777799999999999999863 44422 24689998876
No 266
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=62.42 E-value=25 Score=30.22 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=33.8
Q ss_pred eeEEEEecCC-CcEEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEE
Q 013832 26 IPMRFVWPYG-GRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYK 78 (435)
Q Consensus 26 ~~~~f~w~~~-~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~yk 78 (435)
=+|+|+|... +.+|...++...|... .++- +-+-.|+.+++- ||.|.|+
T Consensus 62 DTVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~--~~~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 62 DTVTWVNTDSVGHNVTAVGGMDPEGSG-TLKA--GINESFTHTFET-PGEYTYY 111 (128)
T ss_pred CEEEEEECCCCCceEEEeCCCCccccc-cccc--CCCcceEEEecc-cceEEEE
Confidence 3679999887 8999999988555443 2221 224567777774 9999886
No 267
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=58.42 E-value=8.2 Score=41.53 Aligned_cols=61 Identities=21% Similarity=0.324 Sum_probs=40.2
Q ss_pred CCCCCCCccccCCCCeEEEEEEcCCc-eEEEEEEECCe----eecCCCCCeeeCCCCCeeeEEEecCCCC
Q 013832 48 WSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVDGE----WRHDEHQPFISSEYGIVNTVLLATEPNF 112 (435)
Q Consensus 48 W~~~~~m~~~~~~~~~~~~~~~L~~g-~~~ykF~VDg~----w~~d~~~~~~~d~~G~~nnvl~v~~~~~ 112 (435)
|.. +.+.|+.-.+|.|-+.|+++|| .|.|+|.||++ |-|......-.+ | +.--|.|.....
T Consensus 85 WhG-v~q~kn~w~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~--G-~~G~liI~~~~~ 150 (563)
T KOG1263|consen 85 WHG-VRQRKNPWQDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRAT--G-VFGALIINPRPG 150 (563)
T ss_pred ecc-ccccCCccccCCccccCCcCCCCeEEEEEEeCCcceeEEEeecccccccc--C-ceeEEEEcCCcc
Confidence 554 4555554346788899999999 99999999953 777666654333 2 334455655443
No 268
>PLN02877 alpha-amylase/limit dextrinase
Probab=51.58 E-value=32 Score=39.47 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=32.7
Q ss_pred EEE-EecCCCcEEEEEeecCCCCC-----CCCCccccCCCCeEEEEEEc-CCceEEEEEEEC
Q 013832 28 MRF-VWPYGGRSVFLSGSFNRWSE-----LLPMSPVEGCPTVFQIIWSI-PPGYHQYKFCVD 82 (435)
Q Consensus 28 ~~f-~w~~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~~~~~~~~~L-~~g~~~ykF~VD 82 (435)
++| +|...|++|.|+- |++|.. .++|. ...|+|++.++- ..| +.|+|.|+
T Consensus 224 ~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~---~~~GVWsv~v~~~~~G-~~Y~Y~V~ 280 (970)
T PLN02877 224 VSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK---ESNGVWSVEGPKSWEG-CYYVYEVS 280 (970)
T ss_pred EEEEEECCCCCEEEEEE-ecCCCCccceEEeccc---CCCCEEEEEeccCCCC-CeeEEEEe
Confidence 444 5777799999985 565532 23565 358999999863 345 34666665
No 269
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=50.87 E-value=32 Score=26.66 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCcEEEEEeHHHHHHHHhhcccc
Q 013832 385 VSSIPIVDDNDSLLDIYCRSDITALAKDKAYA 416 (435)
Q Consensus 385 i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~~ 416 (435)
...+=|||++|..+|+++.++-+.++...-+.
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~~~lD 43 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKEKGLD 43 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHHTT-E
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHHcCCc
Confidence 45677889999999999999999988876443
No 270
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=47.92 E-value=39 Score=35.96 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=83.8
Q ss_pred HHhhccCceecccCCCCCeEEeCCCccHH-HHHHHHHHCCCceeeeeeCCCCeEEEe-eehHHHHHHHHHhccCCCCCCh
Q 013832 164 SVFLSTHTAYELLPESGKVVALDIDLPVK-QAFHILYEQGISMAPLWDFSKARFVGV-LSASDFILILRELGNHGSNLTE 241 (435)
Q Consensus 164 ~~~l~~~~~~dl~p~s~~vi~ld~~~~v~-eA~~~l~~~~i~s~PV~D~~~~~~vGi-lT~~D~i~il~~~~~~~~~l~~ 241 (435)
..-|...++.|+|.+-..+..++.+..+. +......++|..++||++.+....+|. |.... +.++. .. .++
T Consensus 198 ~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~-~~~~~---~~-~~~-- 270 (498)
T KOG2118|consen 198 ALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNL-LRLLQ---VE-VPL-- 270 (498)
T ss_pred hHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhh-hhhhc---cc-ccc--
Confidence 44455666778888888889999999888 445566699999999998654333433 22221 12111 00 011
Q ss_pred hhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHh
Q 013832 242 EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSG 321 (435)
Q Consensus 242 e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~d 321 (435)
....+.+. +-+++.-++.++++.+..+.+.+.+.|.+-|.+. . .-+++++..+
T Consensus 271 ------~~~~v~~~--------------~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~---~----~~~~~~~l~~ 323 (498)
T KOG2118|consen 271 ------EPLPVSES--------------ALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRNG---H----VDIFVLTLED 323 (498)
T ss_pred ------ccccchhh--------------hccccccCCCcccHHHHHHHHhhhhceeEEEecC---C----cceeeEeccc
Confidence 11112221 3356667889999999999999988988888852 2 3688999988
Q ss_pred HHHHHH
Q 013832 322 ILKCVC 327 (435)
Q Consensus 322 Il~~l~ 327 (435)
+ ..+.
T Consensus 324 ~-~~~~ 328 (498)
T KOG2118|consen 324 L-EEVV 328 (498)
T ss_pred h-hhhc
Confidence 7 5444
No 271
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=44.41 E-value=58 Score=27.04 Aligned_cols=64 Identities=16% Similarity=0.315 Sum_probs=38.3
Q ss_pred eeEEEEecCC--CcEEEEEeecCCCCCCCCCcc--c--------cCCCCeEEEEEEcCCc--------eEEEEEEECCe-
Q 013832 26 IPMRFVWPYG--GRSVFLSGSFNRWSELLPMSP--V--------EGCPTVFQIIWSIPPG--------YHQYKFCVDGE- 84 (435)
Q Consensus 26 ~~~~f~w~~~--~~~V~l~Gsf~~W~~~~~m~~--~--------~~~~~~~~~~~~L~~g--------~~~ykF~VDg~- 84 (435)
+.-++.-.+= .|+|.|.=+|++|+....+.. . ...-..|...++||+. ++--+|.+.|+
T Consensus 21 L~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g~e 100 (113)
T PF03370_consen 21 LSGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNGQE 100 (113)
T ss_dssp EEEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETTEE
T ss_pred EEEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCCCE
Confidence 4444444433 588999999999986532211 1 0122578888888643 56667888886
Q ss_pred -eecCC
Q 013832 85 -WRHDE 89 (435)
Q Consensus 85 -w~~d~ 89 (435)
|-.+.
T Consensus 101 yWDNN~ 106 (113)
T PF03370_consen 101 YWDNNN 106 (113)
T ss_dssp EEESTT
T ss_pred EecCCC
Confidence 65543
No 272
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=43.89 E-value=30 Score=28.02 Aligned_cols=16 Identities=13% Similarity=0.468 Sum_probs=9.2
Q ss_pred CeEEEEE-EcCCceEEE
Q 013832 62 TVFQIIW-SIPPGYHQY 77 (435)
Q Consensus 62 ~~~~~~~-~L~~g~~~y 77 (435)
..++.++ ++.||.|+|
T Consensus 74 ~~~~~~f~~~~~G~y~~ 90 (104)
T PF13473_consen 74 ETATVTFTPLKPGEYEF 90 (104)
T ss_dssp -EEEEEEEE-S-EEEEE
T ss_pred CEEEEEEcCCCCEEEEE
Confidence 4466665 789998776
No 273
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=41.37 E-value=52 Score=26.21 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=25.1
Q ss_pred CCeEEEEEEcCCceEEEEEEECCeeecCCCCCe
Q 013832 61 PTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPF 93 (435)
Q Consensus 61 ~~~~~~~~~L~~g~~~ykF~VDg~w~~d~~~~~ 93 (435)
.|.=++.++|+||+|...... |.+.+-+..|.
T Consensus 50 ~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 50 KGQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 466778899999999999888 55667666653
No 274
>PRK10785 maltodextrin glucosidase; Provisional
Probab=38.44 E-value=1.1e+02 Score=33.23 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=42.0
Q ss_pred CCceeeEEEEecCC--CcEEEEEeecCCCCCCCCCccccCCC--CeEEEEEEcC--CceEEEEEEE--CCe
Q 013832 22 DTVLIPMRFVWPYG--GRSVFLSGSFNRWSELLPMSPVEGCP--TVFQIIWSIP--PGYHQYKFCV--DGE 84 (435)
Q Consensus 22 ~~~~~~~~f~w~~~--~~~V~l~Gsf~~W~~~~~m~~~~~~~--~~~~~~~~L~--~g~~~ykF~V--Dg~ 84 (435)
....+.+++.-+.+ .++|.|.=..++-....+|.+....+ ..|+++++++ ++.+.|.|.+ +|+
T Consensus 17 ~~~~~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 17 SKDQLLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred CCCEEEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 34567777765433 57899976666544456887763222 3599999885 7788899988 554
No 275
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=38.13 E-value=71 Score=32.59 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=29.0
Q ss_pred EEEeecCCCCCCCCCccccCCCCeEEEEEE--cCCceEEEEEEECCe
Q 013832 40 FLSGSFNRWSELLPMSPVEGCPTVFQIIWS--IPPGYHQYKFCVDGE 84 (435)
Q Consensus 40 ~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~--L~~g~~~ykF~VDg~ 84 (435)
.+.|+|.+ ....+... ..+|+|+..++ .+||+|+.++.+||.
T Consensus 152 ~vvg~f~D--dG~g~DE~-p~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 152 IVVGEFED--DGEGLDER-PGDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred EEEEeecc--CCccCCCC-CCCceEEEEeeccCCCceEEEEEEEcCc
Confidence 46677752 22233222 35899998865 689999999999985
No 276
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=34.37 E-value=1e+02 Score=33.74 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=56.0
Q ss_pred HHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCCCCCc
Q 013832 285 DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPL 364 (435)
Q Consensus 285 da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v 364 (435)
+..+.|...+ ..+.+.| .+| .++++....++++.+.... ..++ ..|-...++.-.+|+.. ...+|+
T Consensus 63 ~l~~~l~~~~-~~~~l~D---~~G---~vL~~~g~~~~~~~~~~~~-~~~G-~~w~E~~~GTnaig~al-----~~~~pv 128 (638)
T PRK11388 63 DAWEYMADRE-CALLILD---ETG---CILSRNGDPQTLQQLSALG-FNDG-TYCAEGIIGTNALSLAA-----ISGQPV 128 (638)
T ss_pred HHHHHhcCCC-cEEEEEc---CCc---eEEEEeCCHHHHHHHHHcC-CccC-CccchhccCcCHHHHHH-----hcCCce
Confidence 3334444444 6777776 356 7999999988887766421 1111 12222222222222221 123454
Q ss_pred eEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEe
Q 013832 365 AMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYC 402 (435)
Q Consensus 365 ~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis 402 (435)
. |...+-..+.+ ....+.+.||.|.+|+++|+|+
T Consensus 129 ~-v~g~EH~~~~~---~~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 129 K-TMGDQHFKQAL---HNWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred E-EecHHHHHHhc---cCceEEeeEEEcCCCCEEEEEE
Confidence 4 44444444443 3446789999999999999996
No 277
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=33.88 E-value=31 Score=25.07 Aligned_cols=25 Identities=32% Similarity=0.686 Sum_probs=14.9
Q ss_pred EEE-EEcCCceEEEEEEE---CCeeecCC
Q 013832 65 QII-WSIPPGYHQYKFCV---DGEWRHDE 89 (435)
Q Consensus 65 ~~~-~~L~~g~~~ykF~V---Dg~w~~d~ 89 (435)
++. -+||||.|.++-.+ +|.|..++
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp EEEEES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EEEEEeCCCEEEEEEEEEECCCCCcCccc
Confidence 444 47999999998887 57787765
No 278
>TIGR03009 plancto_dom_2 Planctomycetes uncharacterized domain TIGR03009. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to four proteins per genome. The function is unknown.
Probab=32.65 E-value=55 Score=30.60 Aligned_cols=15 Identities=7% Similarity=0.261 Sum_probs=10.3
Q ss_pred EE-CCe--eecCCCCCee
Q 013832 80 CV-DGE--WRHDEHQPFI 94 (435)
Q Consensus 80 ~V-Dg~--w~~d~~~~~~ 94 (435)
+| ||+ |.+||....+
T Consensus 67 iVsDGk~lW~YDpdleQV 84 (210)
T TIGR03009 67 WICNGTAVYAYNGLAKTV 84 (210)
T ss_pred EEECCCEEEEECCChhhE
Confidence 44 885 8888877644
No 279
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=32.22 E-value=1.5e+02 Score=24.84 Aligned_cols=16 Identities=25% Similarity=0.119 Sum_probs=11.3
Q ss_pred eeEEEEecCCCcEEEE
Q 013832 26 IPMRFVWPYGGRSVFL 41 (435)
Q Consensus 26 ~~~~f~w~~~~~~V~l 41 (435)
-+|+|+|..++..|..
T Consensus 23 dTV~f~n~d~~Hnv~~ 38 (116)
T TIGR02375 23 DTVTFVPTDKGHNVET 38 (116)
T ss_pred CEEEEEECCCCeeEEE
Confidence 4688999877766553
No 280
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=31.05 E-value=2.3e+02 Score=31.02 Aligned_cols=101 Identities=14% Similarity=0.180 Sum_probs=60.7
Q ss_pred HHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhcc-CCCCCChhhhhhccHHHHHHHHHhhcccccCCCcc
Q 013832 191 VKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGN-HGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKA 269 (435)
Q Consensus 191 v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~-~~~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~ 269 (435)
+.+.+..|...+ ..+.+.|. +|.++.+....+++..+..... .+...+++...+.-+....
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~-~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al---------------- 122 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDE-TGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAA---------------- 122 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcC-CceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHH----------------
Confidence 445555665556 77888997 4899999999988877665332 2233333333433332211
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeee
Q 013832 270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIAS 318 (435)
Q Consensus 270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT 318 (435)
..+.++.|...+ +-...+....+.+.||.+. .| +++|+|+
T Consensus 123 ~~~~pv~v~g~E---H~~~~~~~~~c~aaPI~d~---~G---~liGvl~ 162 (638)
T PRK11388 123 ISGQPVKTMGDQ---HFKQALHNWAFCATPVFDS---KG---RLTGTIA 162 (638)
T ss_pred hcCCceEEecHH---HHHHhccCceEEeeEEEcC---CC---CEEEEEE
Confidence 123344444443 3344455667889999963 46 7999995
No 281
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=29.02 E-value=54 Score=27.12 Aligned_cols=18 Identities=11% Similarity=0.362 Sum_probs=13.5
Q ss_pred CEEEEEcCCCcEEEEEeH
Q 013832 386 SSIPIVDDNDSLLDIYCR 403 (435)
Q Consensus 386 ~~lPVVD~~g~lvGiis~ 403 (435)
-..||.|.+|+++|+++.
T Consensus 92 ~~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 92 AFAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEEE-TTS-EEEEEEE
T ss_pred EEEeeECCCCcEEEEEEE
Confidence 368999999999999874
No 282
>PF04985 Phage_tube: Phage tail tube protein FII; InterPro: IPR006498 This entry is represented by Bacteriophage P2, FII, the major tail tube protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tails of some phage are contractile. These sequences represent the tail tube, or tail core, protein of the contractile tail of phage P2, and homologous proteins from other phage.
Probab=27.74 E-value=2e+02 Score=25.55 Aligned_cols=48 Identities=23% Similarity=0.282 Sum_probs=30.3
Q ss_pred EEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEECCe--eecCCCCC
Q 013832 38 SVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGE--WRHDEHQP 92 (435)
Q Consensus 38 ~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykF~VDg~--w~~d~~~~ 92 (435)
++.+.|.+..|... ..++ ++....++.+. .+.||+.+||+ +..|..+.
T Consensus 99 ~~~~~G~~~~~~~g-~~k~--g~~~~~~~~~~----v~yyk~~idG~~~~eiD~~n~ 148 (167)
T PF04985_consen 99 VAVIRGRIKSVDPG-EWKP--GEKTETSIEFS----VTYYKLEIDGKEIIEIDKLNN 148 (167)
T ss_pred EEEEEEEEEeeCCc-ccCc--CccccceEEEE----EEEEEEEECCEEEEEEECccC
Confidence 46777888877653 3333 22333444443 57999999997 66676665
No 283
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=25.42 E-value=2.4e+02 Score=24.33 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=29.8
Q ss_pred CcEEEEEeecCCCCCCCCCccccCCCCeEEEEE-----EcCCceEEEEEEE---CCeeecCCCC
Q 013832 36 GRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIW-----SIPPGYHQYKFCV---DGEWRHDEHQ 91 (435)
Q Consensus 36 ~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~-----~L~~g~~~ykF~V---Dg~w~~d~~~ 91 (435)
++++....+..+. .|.|. ..|...+ .|.||.|+++-.+ ++.|....+.
T Consensus 72 ~~k~~~~~~~~~~----~mAPN----S~f~~~i~~~~~~lk~G~Y~l~~~~~~~~~~W~f~k~F 127 (140)
T PF11797_consen 72 SKKVLYTFKKENM----QMAPN----SNFNFPIPLGGKKLKPGKYTLKITAKSGKKTWTFTKDF 127 (140)
T ss_pred CCeEEEEeeccCC----EECCC----CeEEeEecCCCcCccCCEEEEEEEEEcCCcEEEEEEEE
Confidence 4456666665443 44453 3355444 4789999999888 3468876543
No 284
>TIGR02589 cas_Csd2 CRISPR-associated protein, Csd2 family. This model represents one of two closely related CRISPR-associated proteins that belong to the larger family of TIGR01595. Members are the Csd2 protein of the Dvulg subtype of CRISPR/cas system. CRISPR stands for Clustered Regularly Interspaced Short Palindromic Repeats. The related model is TIGR02590, the Csh2 protein of the Hmari CRISPR subtype.
Probab=25.30 E-value=1.4e+02 Score=29.22 Aligned_cols=73 Identities=10% Similarity=0.028 Sum_probs=46.1
Q ss_pred CCCCCCccCCCCCCCCCCceeeEEEEecCC-----CcEEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEE
Q 013832 6 MFNPGMDAAREPASVPDTVLIPMRFVWPYG-----GRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFC 80 (435)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~f~w~~~-----~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykF~ 80 (435)
+||.+++....+. +..=||+|.|-.. ..++.++.+|+.=.... .+.++..+.+-....+|-|.|.|.|+
T Consensus 111 ~FGavf~~~~~~~----~v~GPVQ~~~a~Sl~pv~~~~~~ITr~~~t~~~~~--~~~~~~~~TmG~k~~V~yglY~~~G~ 184 (284)
T TIGR02589 111 AFGAVMATKGNAG----QVRGPVQITFARSIDPVVIQEHSITRMAVTTEEEA--EKQKGDSRTMGRKHTVDYGLYVAHGF 184 (284)
T ss_pred hhceeeeccCCCc----eEecCEEEecceecccceeEEEEEEeeeccccccc--ccccccCCcccceeecCeEEEEEEEE
Confidence 6777776654443 3455889999653 35568888887422111 11123345666677789999999999
Q ss_pred ECCe
Q 013832 81 VDGE 84 (435)
Q Consensus 81 VDg~ 84 (435)
|+-.
T Consensus 185 IN~~ 188 (284)
T TIGR02589 185 ISAQ 188 (284)
T ss_pred EChh
Confidence 9753
No 285
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=23.85 E-value=71 Score=29.01 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCcEEEEEeHHHHHHHHhhccc
Q 013832 385 VSSIPIVDDNDSLLDIYCRSDITALAKDKAY 415 (435)
Q Consensus 385 i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~ 415 (435)
...+=|||++|..+|+++..+-+..+...-+
T Consensus 19 ~~~Vrli~~dG~~lgv~~~~eAl~~A~~~~l 49 (177)
T PRK00028 19 AREVRLIGDDGEQLGIVSTREALELAEEAGL 49 (177)
T ss_pred CCEEEEECCCCcCCCceeHHHHHHHHHHcCC
Confidence 3445666777777777777777766665443
No 286
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=23.70 E-value=54 Score=26.35 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=17.1
Q ss_pred HHcCCCEEEEEcCCCcEEEE
Q 013832 381 VQAQVSSIPIVDDNDSLLDI 400 (435)
Q Consensus 381 ~~~~i~~lPVVD~~g~lvGi 400 (435)
...+-+.=||+|.+|+++||
T Consensus 101 ~~~G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 101 TRPGSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp -STTTTTSEEEETTSEEEEE
T ss_pred cCCCcEeHhEECCCCEEEeC
Confidence 45688999999999999997
No 287
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.82 E-value=75 Score=34.71 Aligned_cols=27 Identities=26% Similarity=0.642 Sum_probs=21.8
Q ss_pred CCceEEEEEEECCeeec---CCCCCeeeCC
Q 013832 71 PPGYHQYKFCVDGEWRH---DEHQPFISSE 97 (435)
Q Consensus 71 ~~g~~~ykF~VDg~w~~---d~~~~~~~d~ 97 (435)
..|.|+|||.++|+|+. |+..|+..+.
T Consensus 115 yaGif~f~~w~~G~W~~VvIDD~LP~~~~~ 144 (612)
T KOG0045|consen 115 YAGIFHFRFWQNGEWVEVVIDDRLPTSNGG 144 (612)
T ss_pred cceEEEEEEEeCCeEEEEEeeeecceEcCC
Confidence 35899999999999975 7777876553
No 288
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=22.68 E-value=3.6e+02 Score=21.93 Aligned_cols=91 Identities=15% Similarity=0.143 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccCC
Q 013832 279 PNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGE 358 (435)
Q Consensus 279 ~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~ 358 (435)
..+-+.+-+..+.++|..-+=|.-.-+.-|....-+.|-|++|+-+|+......- .+++.++.-|--
T Consensus 6 ~~~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~~~-------~~~Ls~LT~GvH------ 72 (98)
T PF02829_consen 6 TPDEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEKSK-------AKPLSSLTGGVH------ 72 (98)
T ss_dssp -GGGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH---------S--STTGGGGEE------
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhccC-------CcchHHhcCCEe------
Confidence 4456677788899998877755543334441112334449999999987653321 123333321110
Q ss_pred CCCCCceEecCCCCHHHHHHHHHHcCC
Q 013832 359 PNRRPLAMLRPSASLSAALNLLVQAQV 385 (435)
Q Consensus 359 ~~~~~v~tv~~d~~L~~a~~~m~~~~i 385 (435)
..-+.++..+.+..+.+.|.+.|+
T Consensus 73 ---~HtI~a~~~e~l~~I~~~L~~~G~ 96 (98)
T PF02829_consen 73 ---YHTIEAPDEEDLDKIEEALKKKGF 96 (98)
T ss_dssp ---EEEEEESSHHHHHHHHHHHHHTT-
T ss_pred ---eEEEEECCHHHHHHHHHHHHHCCC
Confidence 023446666778888888887765
No 289
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=22.52 E-value=1.2e+02 Score=23.59 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=28.8
Q ss_pred EEEEecCCCcEEEEEeecCCCCCCCCCccccCCCCeEEEE-EEcCCc-eEEEEEEE----CCe
Q 013832 28 MRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQII-WSIPPG-YHQYKFCV----DGE 84 (435)
Q Consensus 28 ~~f~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~-~~L~~g-~~~ykF~V----Dg~ 84 (435)
+++..| ..-+|++-|.=++ ..+.+.+.. -+|++| .|.|++.+ ||+
T Consensus 5 itv~vP-adAkl~v~G~~t~-----------~~G~~R~F~T~~L~~G~~y~Y~v~a~~~~dG~ 55 (75)
T TIGR03000 5 ITVTLP-ADAKLKVDGKETN-----------GTGTVRTFTTPPLEAGKEYEYTVTAEYDRDGR 55 (75)
T ss_pred EEEEeC-CCCEEEECCeEcc-----------cCccEEEEECCCCCCCCEEEEEEEEEEecCCc
Confidence 455556 3567888774331 123444443 679999 99999998 774
No 290
>TIGR01595 cas_CT1132 CRISPR-associated protein, CT1132 family. This protein is found in at least five widely species that contain CRISPR loci. Four cas (CRISPR-associated) proteins that are widely distributed and found near the CRISPR repeats. This protein is found exclusively next to other cas proteins. Its function is unknown.
Probab=22.48 E-value=1.4e+02 Score=28.95 Aligned_cols=67 Identities=6% Similarity=0.004 Sum_probs=43.2
Q ss_pred CCCCCCCccCCCCCCCCCCceeeEEEEecCC-----CcEEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEE
Q 013832 5 QMFNPGMDAAREPASVPDTVLIPMRFVWPYG-----GRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKF 79 (435)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~f~w~~~-----~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykF 79 (435)
.+||.+++....+ ...+=||.|.|-.. -.++.+++.|..=... ..+.|-....+|-|.|.|-|
T Consensus 104 R~FGav~~~~~~~----~~itGPVQf~~g~Sl~~v~~~~~~iT~~~~s~e~k--------~q~T~g~k~~v~yaly~~~g 171 (265)
T TIGR01595 104 RLFGAVITYLKKS----IGITGPVQISMAKSLEPVVISSLQGTRATAGMEAK--------NQRTMGTKYFVPYALYVLYG 171 (265)
T ss_pred hhhceeeeccCcc----eeEeCCEEeccceecccceeEEEEeeeeccccCcc--------ccccccceeecceEEEEEEE
Confidence 3677777664333 33445899999643 2456777778653221 13445556668999999999
Q ss_pred EECC
Q 013832 80 CVDG 83 (435)
Q Consensus 80 ~VDg 83 (435)
+|+.
T Consensus 172 ~IN~ 175 (265)
T TIGR01595 172 VINA 175 (265)
T ss_pred EECH
Confidence 9875
No 291
>PF12282 H_kinase_N: Signal transduction histidine kinase; InterPro: IPR022066 This domain is found in bacteria. This domain is about 150 amino acids in length. This domain is found associated with PF07568 from PFAM, PF08448 from PFAM, PF02518 from PFAM. This domain has a single completely conserved residue P that may be functionally important. This family is mostly annotated as a histidine kinase involved in signal transduction but there is little published evidence to support this. ; PDB: 2YKH_B 2YKF_A.
Probab=22.37 E-value=49 Score=28.94 Aligned_cols=32 Identities=16% Similarity=0.387 Sum_probs=19.3
Q ss_pred CCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccC
Q 013832 384 QVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI 418 (435)
Q Consensus 384 ~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~~~l 418 (435)
+...+||+++ |++||++++. ..+...+....|
T Consensus 105 ~~~~~PI~~~-~~vIaVl~~~--~~~~~~~~~~~l 136 (145)
T PF12282_consen 105 RQEVVPIRRN-GRVIAVLIRE--TNLSASRTPSRL 136 (145)
T ss_dssp EEEEEEEEET-TEEEEEEEEE----GGGS----HH
T ss_pred EEEEEEEEEC-CEEEEEEEEE--cccccccCCCHH
Confidence 3578999995 5999999965 344444444444
No 292
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=21.65 E-value=83 Score=28.24 Aligned_cols=27 Identities=22% Similarity=0.489 Sum_probs=14.1
Q ss_pred EEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 013832 387 SIPIVDDNDSLLDIYCRSDITALAKDK 413 (435)
Q Consensus 387 ~lPVVD~~g~lvGiis~~DI~~~~~~~ 413 (435)
.+=|||++|..+|+++..+-+.++...
T Consensus 9 ~Vrli~~dG~~lgv~~~~eAl~~A~~~ 35 (165)
T TIGR00168 9 EVRLIDENGEQLGIVSREEALEIAEEA 35 (165)
T ss_pred EEEEECCCCcCCCcccHHHHHHHHHHc
Confidence 344555555555555555555555443
No 293
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=21.08 E-value=1.4e+02 Score=26.93 Aligned_cols=33 Identities=12% Similarity=0.291 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccc
Q 013832 384 QVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA 416 (435)
Q Consensus 384 ~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~~ 416 (435)
+.+.+=++|++|.-+|+++..+-+.++...-+.
T Consensus 17 r~~evrlIg~~GeqlGiv~~~eAL~lA~e~~LD 49 (176)
T COG0290 17 RAREVRLIGEDGEQLGIVSIEEALKLAEEAGLD 49 (176)
T ss_pred cccEEEEECCCCcEEcceeHHHHHHHHHHcCCC
Confidence 456777899999999999999999998876553
No 294
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=20.65 E-value=1e+02 Score=23.32 Aligned_cols=26 Identities=19% Similarity=0.528 Sum_probs=18.2
Q ss_pred EEEEEcCCCcEEEEEe----HHHHHHHHhh
Q 013832 387 SIPIVDDNDSLLDIYC----RSDITALAKD 412 (435)
Q Consensus 387 ~lPVVD~~g~lvGiis----~~DI~~~~~~ 412 (435)
+.||.+++|+++|++. ...|...+.+
T Consensus 18 s~pi~~~~g~~~Gvv~~di~l~~l~~~i~~ 47 (81)
T PF02743_consen 18 SVPIYDDDGKIIGVVGIDISLDQLSEIISN 47 (81)
T ss_dssp EEEEEETTTEEEEEEEEEEEHHHHHHHHTT
T ss_pred EEEEECCCCCEEEEEEEEeccceeeeEEEe
Confidence 5799998899999864 4455554443
No 295
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=20.18 E-value=2.8e+02 Score=29.58 Aligned_cols=121 Identities=12% Similarity=0.182 Sum_probs=71.3
Q ss_pred CCceEeCCCCCHH-HHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCc
Q 013832 272 RPLVYAGPNDNLK-DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG 350 (435)
Q Consensus 272 ~~~v~v~~~~sL~-da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~ig 350 (435)
..+.....+..+. +.+....+.+.+++||.+. +.. ..+|.+=....++++... .++-..++.
T Consensus 214 ~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~--~~~---~~i~~~L~~~~~~~~~~~-------~~~~~~~v~----- 276 (498)
T KOG2118|consen 214 EDVFALDANTKLDRETVGEIVKHGYSRIPVYEQ--EPK---NKIGGLLVMNLLRLLQVE-------VPLEPLPVS----- 276 (498)
T ss_pred hhheeeccccccchHHHhhHhhcCcceeeeccC--ccc---chhhHHHHhhhhhhhccc-------cccccccch-----
Confidence 3555666677775 5667777999999999963 211 233331111222222110 011112222
Q ss_pred ccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccC
Q 013832 351 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI 418 (435)
Q Consensus 351 t~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~~~l 418 (435)
+.+.+++..++.++++.+.++.+.+.+.+.+ ||.+...-+++++..|+ .....+.+.+.
T Consensus 277 -------~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~-~v~~~~~~~~~~~l~~~-~~~~~ev~de~ 335 (498)
T KOG2118|consen 277 -------ESALLRLPLVPENMPLLDLLNEFQKGKSHMA-VVRNGHVDIFVLTLEDL-EEVVKEVEDEE 335 (498)
T ss_pred -------hhhccccccCCCcccHHHHHHHHhhhhceeE-EEecCCcceeeEeccch-hhhcceecccc
Confidence 2233577789999999999999977665555 55445677899999998 43335555544
No 296
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=20.16 E-value=1.9e+02 Score=21.09 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=18.2
Q ss_pred CCCeEEEEEEcCCceEEEEEEE--CCe
Q 013832 60 CPTVFQIIWSIPPGYHQYKFCV--DGE 84 (435)
Q Consensus 60 ~~~~~~~~~~L~~g~~~ykF~V--Dg~ 84 (435)
.+|.|... .|++|.|..+... +|-
T Consensus 25 ~~G~~~f~-~L~~G~Y~l~E~~aP~GY 50 (70)
T PF05738_consen 25 ENGKYTFK-NLPPGTYTLKETKAPDGY 50 (70)
T ss_dssp TTSEEEEE-EEESEEEEEEEEETTTTE
T ss_pred CCCEEEEe-ecCCeEEEEEEEECCCCC
Confidence 46766554 6899999999988 663
No 297
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=20.09 E-value=2.3e+02 Score=21.79 Aligned_cols=48 Identities=13% Similarity=0.242 Sum_probs=25.1
Q ss_pred eEEEEecCC-CcEEE-EEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEE
Q 013832 27 PMRFVWPYG-GRSVF-LSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYK 78 (435)
Q Consensus 27 ~~~f~w~~~-~~~V~-l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~yk 78 (435)
+++|++..+ +..|. ..|.+.++...-++. +.+..|+.++. .||.|.|.
T Consensus 20 tVt~~N~d~~~Hnv~~~~g~~~~~~~~~~~~---~~g~~~~~tf~-~~G~y~y~ 69 (83)
T TIGR02657 20 TVTWINREAMPHNVHFVAGVLGEAALKGPMM---KKEQAYSLTFT-EAGTYDYH 69 (83)
T ss_pred EEEEEECCCCCccEEecCCCCcccccccccc---CCCCEEEEECC-CCEEEEEE
Confidence 456666654 45654 445554433221221 12456777765 67876664
Done!