BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013834
(435 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P24521|ERG8_YEAST Phosphomevalonate kinase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ERG8 PE=1 SV=2
Length = 451
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 120/388 (30%), Positives = 191/388 (49%), Gaps = 45/388 (11%)
Query: 1 MYKLSLKNLTLQAVSLSESRNPFVEYAVQYAVAAAYAIFDKNKKDALHKLLLQGLDITIL 60
+Y +S K+ + VS+ S+NPF+E + A ++ F N D ++ L I I
Sbjct: 68 LYHISPKSGFI-PVSIGGSKNPFIEKVI----ANVFSYFKPNMDDYCNRNLFV---IDIF 119
Query: 61 GCNDFYSYRNQI-EARGLPLTPEALAALPPFASITFNADESNGGNCKPEVAKTGLGSSAA 119
+ ++S + + E RG N S + EV KTGLGSSA
Sbjct: 120 SDDAYHSQEDSVTEHRG-------------------NRRLSFHSHRIEEVPKTGLGSSAG 160
Query: 120 MTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYG 179
+ T + AL + + +L +++D+ + ++H +AQ AHC AQGKIGSGFDV++A YG
Sbjct: 161 LVTVLTTALASFF-VSDLENNVDKYRE----VIHNLAQVAHCQAQGKIGSGFDVAAAAYG 215
Query: 180 SQRYVRFSPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGG 239
S RY RF P ++S+ T ++ + + W+ LP +TL +G+ G
Sbjct: 216 SIRYRRFPPALISNLPDIGSATYGSKLAHLVDEEDWNITIKSNHLPSGLTLWMGDI-KNG 274
Query: 240 SSTPSMVGAVKKWQKSDPQKSQETWKKLSESNSALETQLNMLSKLAEEHWNAYKQVIESC 299
S T +V VK W S +S + + +L +NS L+ L +L E H + Q+ ES
Sbjct: 275 SETVKLVQKVKNWYDSHMPESLKIYTELDHANSRFMDGLSKLDRLHETHDDYSDQIFESL 334
Query: 300 SKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIEPESQTQLLNA 359
+++ ++ E T+ RDA+ IR R + + +G IEP QT LL+
Sbjct: 335 E--RNDCTCQKYPEITE---------VRDAVATIRRSFRKITKESGADIEPPVQTSLLDD 383
Query: 360 TMDMEGVLLAGVPGAGGFDAVFAVTLGD 387
++GVL +PGAGG+DA+ +T D
Sbjct: 384 CQTLKGVLTCLIPGAGGYDAIAVITKQD 411
>sp|Q9UT88|ERG8_SCHPO Probable phosphomevalonate kinase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=erg8 PE=3 SV=1
Length = 426
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 123/412 (29%), Positives = 185/412 (44%), Gaps = 79/412 (19%)
Query: 16 LSESRNPFVEYAVQYAVAAAYAIFDKNKKDALHKLLLQGLDITILGCNDFYSYRNQIEAR 75
L ++ NPFV+ A+ Y + ++ L Q L +T L ++ Y ++ Q
Sbjct: 83 LEKNPNPFVQLALFYVINYFFST-------GRQPLCWQDLQVT-LQVDNAYYHQPQ---- 130
Query: 76 GLPLTPEALAALPPFASITFNADESNGGNCK-PEVAKTGLGSSAAMTTAVVAALLHYLGI 134
L P+ + P F N NC +V KTGLGSSAAM T+++ +L +L +
Sbjct: 131 ---LKPDQ-TSYPKF----------NFLNCTLGQVHKTGLGSSAAMITSLIGSL--FLSL 174
Query: 135 VNLSSSIDQQ----HDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPEV 190
L+ + D +VH +AQ AHC AQGK+GSGFDV +A +GS Y RF P++
Sbjct: 175 RRLTDDTGDKSLKIDDSTKVIVHNLAQIAHCSAQGKVGSGFDVGAATWGSCIYRRFDPKL 234
Query: 191 LSSAQVA----VKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMV 246
+ V +K + I+ KW + F LP LL+G+ GGSSTP MV
Sbjct: 235 IEQLLVPYDEQIKNINFSTELRKIVSKKW-SDVVPFQLPATYCLLMGDVA-GGSSTPGMV 292
Query: 247 GAVKKWQKSDPQKSQETWKKLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEK 306
V++WQK +P++S+ + L ++ K S L SE
Sbjct: 293 KKVQQWQKENPEESKNCFDDLYSRVLSI------------------KNCFLSSESLDSE- 333
Query: 307 WMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIEPESQTQLLNATMDMEGV 366
+ IR ++ + A V IEP QT +L+ + GV
Sbjct: 334 -------------------LQSQFRSIRRILQRITVEAKVDIEPLKQTNILDNIEQLPGV 374
Query: 367 LLAGVPGAGGFDAVFAVTLGDSG--SNVTKAWSSVNVLALLVREDPHGVSLE 416
+ GVPGAGGFDA F + + + NV K W V+ + V G+++E
Sbjct: 375 IGVGVPGAGGFDAQFCLAINHTEIIENVIKTWKDDGVVPMDVSPAFDGLAVE 426
>sp|Q89AE4|SRP54_BUCBP Signal recognition particle protein OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=ffh PE=3 SV=1
Length = 450
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 17/112 (15%)
Query: 186 FSPEVLSSA---QVAVKETPLQEVITGILK------GKWDHERAMFSLPPLMTLLLGEPG 236
F P + S QV TP QE+I + K GK +H + PP + L++G G
Sbjct: 51 FIPSIQKSVIGNQVNKSLTPGQELIKIVKKELTLILGKENHSLNLSVTPPAIILMIGLQG 110
Query: 237 TGGSSTPSMVGAV--KKWQKSDPQKSQETWKKLSESNSALETQLNMLSKLAE 286
+G ++T + +G + K++K S + ++ A QL MLSK A+
Sbjct: 111 SGKTTTTAKLGQLIRTKYKKKVIVTSIDIYR------LAAIKQLKMLSKQAK 156
>sp|P46086|KIME_ARATH Mevalonate kinase OS=Arabidopsis thaliana GN=At5g27450 PE=2 SV=1
Length = 378
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 23/112 (20%)
Query: 112 TGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDG---------DLDMVHMIAQSAHCI 162
+GLGSSAA+ A+ AAL L+SSI ++ G +L++++ A I
Sbjct: 144 SGLGSSAALCVALTAAL--------LASSISEKTRGNGWSSLDETNLELLNKWAFEGEKI 195
Query: 163 AQGKIGSGFDVSSAVYGSQRYVRFSPEVLSSAQVAVKETPLQEVITGILKGK 214
GK SG D + + YG+ ++F ++ Q PL+ +IT G+
Sbjct: 196 IHGK-PSGIDNTVSAYGNM--IKFCSGEITRLQ---SNMPLRMLITNTRVGR 241
>sp|P21709|EPHA1_HUMAN Ephrin type-A receptor 1 OS=Homo sapiens GN=EPHA1 PE=1 SV=4
Length = 976
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 74 ARGLPLTPEALAALPPFASITFNADESNGGNCKPEVAKTGLGSSAAMTTAVVAALLHYLG 133
ARGL + L P+A+ TFN + NG +GLGSS +T+V ++ H
Sbjct: 396 ARGLTTPAVHVNGLEPYANYTFNVEAQNG--------VSGLGSSGHASTSVSISMGHAES 447
Query: 134 IVNLSSSIDQQHDGDLDMV 152
+ LS + ++ L++
Sbjct: 448 LSGLSLRLVKKEPRQLELT 466
>sp|O29987|PYRG_ARCFU CTP synthase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 /
DSM 4304 / JCM 9628 / NBRC 100126) GN=pyrG PE=3 SV=1
Length = 532
Score = 32.3 bits (72), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 266 KLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLG 325
K + + L +LN+ +K + + W + K M+ E A+V +
Sbjct: 251 KREKLDEYLMRKLNLRAKESRKEWE------------EMVKRMKTLYEEASIAIVGKYVD 298
Query: 326 ARDAMLGIRYHMRLMGEAAG-----VPIEPESQTQLLNATMDMEGVLLAGVPGAGG 376
RDA L I+ ++ G AG V ++ E + + T+D++G+L+ G GA G
Sbjct: 299 VRDAYLSIKEALKHGGIEAGCKVNIVWVDSEDLENVDDFTLDVDGILVPGGFGARG 354
>sp|Q07VK7|GPDA_RHOP5 Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Rhodopseudomonas
palustris (strain BisA53) GN=gpsA PE=3 SV=1
Length = 328
Score = 32.3 bits (72), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
Query: 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHD----GDLDMVHMIAQSAHCIAQGK 166
K G + AAMTT L+ + + I+ H GDL M QS +
Sbjct: 204 KLGASALAAMTTRGFVELVRFG--TAYGARIETMHGLSGLGDLTMCCSTPQSRNFSFGMA 261
Query: 167 IGSGFDVSSAVYGSQRYVRFS-PEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSL 224
+G G V++A +G F+ P +L A+ E P+ E + IL+G+ + A+ +L
Sbjct: 262 LGRGESVATAAHGKLAEGAFTAPVLLEMARAKHVEMPISEAVAAILEGQTTVDAAIGAL 320
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,019,574
Number of Sequences: 539616
Number of extensions: 6223928
Number of successful extensions: 15467
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 15449
Number of HSP's gapped (non-prelim): 26
length of query: 435
length of database: 191,569,459
effective HSP length: 120
effective length of query: 315
effective length of database: 126,815,539
effective search space: 39946894785
effective search space used: 39946894785
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)