Query 013834
Match_columns 435
No_of_seqs 268 out of 967
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:51:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4519 Phosphomevalonate kina 100.0 6.1E-84 1.3E-88 624.3 32.3 387 1-425 66-458 (459)
2 TIGR01219 Pmev_kin_ERG8 phosph 100.0 2.7E-80 5.8E-85 641.3 33.5 367 17-422 83-454 (454)
3 COG3890 ERG8 Phosphomevalonate 100.0 5.4E-53 1.2E-57 401.4 22.8 277 17-418 57-335 (337)
4 TIGR01220 Pmev_kin_Gr_pos phos 100.0 6.9E-43 1.5E-47 356.0 28.2 241 110-412 115-358 (358)
5 COG1577 ERG12 Mevalonate kinas 100.0 1.8E-36 4E-41 300.4 22.8 206 110-406 94-302 (307)
6 PLN02677 mevalonate kinase 100.0 1.2E-35 2.7E-40 304.3 26.4 235 111-417 141-383 (387)
7 KOG1511 Mevalonate kinase MVK/ 100.0 2.1E-29 4.5E-34 247.6 21.8 238 110-420 142-384 (397)
8 PRK13412 fkp bifunctional fuco 100.0 2.3E-27 5E-32 263.1 24.9 226 110-417 737-973 (974)
9 TIGR00549 mevalon_kin mevalona 100.0 1.6E-27 3.4E-32 233.7 20.7 184 110-383 89-273 (273)
10 PRK03926 mevalonate kinase; Pr 99.9 1.1E-25 2.4E-30 224.0 25.0 216 110-418 86-301 (302)
11 PTZ00298 mevalonate kinase; Pr 99.9 1E-24 2.3E-29 220.0 22.6 209 110-405 105-319 (328)
12 PRK05101 galactokinase; Provis 99.9 4.2E-24 9E-29 219.8 23.9 232 111-415 124-381 (382)
13 PRK05322 galactokinase; Provis 99.9 4.9E-24 1.1E-28 219.7 23.7 235 111-415 124-386 (387)
14 COG0153 GalK Galactokinase [Ca 99.9 1.2E-23 2.6E-28 211.6 21.3 241 72-394 106-361 (390)
15 TIGR00131 gal_kin galactokinas 99.9 7.9E-24 1.7E-28 218.1 19.3 215 111-393 122-357 (386)
16 COG2605 Predicted kinase relat 99.9 7.5E-23 1.6E-27 197.6 23.2 229 110-417 100-331 (333)
17 PRK00555 galactokinase; Provis 99.9 8.6E-23 1.9E-27 208.8 23.7 236 110-415 102-361 (363)
18 PLN02521 galactokinase 99.9 2.4E-22 5.2E-27 212.3 20.5 231 110-398 160-465 (497)
19 PLN02865 galactokinase 99.9 1.2E-21 2.5E-26 203.1 22.9 220 110-394 142-388 (423)
20 PTZ00290 galactokinase; Provis 99.9 1.3E-20 2.9E-25 197.2 25.1 257 111-417 146-457 (468)
21 PRK03817 galactokinase; Provis 99.9 4.8E-20 1E-24 187.7 25.4 212 111-394 98-322 (351)
22 PRK01123 shikimate kinase; Pro 99.7 4.8E-15 1E-19 146.8 19.2 194 110-416 86-282 (282)
23 PLN02451 homoserine kinase 99.7 1.2E-14 2.7E-19 149.0 22.5 211 110-418 145-367 (370)
24 TIGR01920 Shik_kin_archae shik 99.6 1.1E-14 2.4E-19 142.8 19.6 179 110-400 75-255 (261)
25 PRK00128 ipk 4-diphosphocytidy 99.5 4E-13 8.7E-18 133.0 16.9 178 110-400 95-273 (286)
26 TIGR00191 thrB homoserine kina 99.5 4.1E-13 8.8E-18 134.2 17.1 203 110-416 91-302 (302)
27 PRK02534 4-diphosphocytidyl-2- 99.5 1.4E-12 3.1E-17 130.8 19.7 208 110-416 97-311 (312)
28 PRK03188 4-diphosphocytidyl-2- 99.5 2.6E-12 5.7E-17 128.2 18.1 200 110-417 94-296 (300)
29 PRK01212 homoserine kinase; Pr 99.4 7.8E-12 1.7E-16 124.7 19.4 201 111-415 93-300 (301)
30 TIGR00154 ispE 4-diphosphocyti 99.4 6.7E-12 1.5E-16 125.1 16.4 174 110-396 97-271 (293)
31 PRK14614 4-diphosphocytidyl-2- 99.4 4.9E-12 1.1E-16 125.3 14.2 172 110-398 96-268 (280)
32 PRK14608 4-diphosphocytidyl-2- 99.2 3.3E-10 7.2E-15 112.8 15.2 90 110-249 101-190 (290)
33 PF00288 GHMP_kinases_N: GHMP 99.1 5.6E-11 1.2E-15 92.5 5.2 58 110-180 10-67 (67)
34 PRK14611 4-diphosphocytidyl-2- 99.1 1.9E-09 4E-14 106.6 16.9 92 110-251 91-182 (275)
35 PRK14616 4-diphosphocytidyl-2- 99.1 1.7E-09 3.6E-14 107.6 16.3 90 110-249 94-184 (287)
36 PRK14612 4-diphosphocytidyl-2- 99.1 1.6E-09 3.6E-14 107.0 14.8 170 110-399 94-264 (276)
37 PRK14609 4-diphosphocytidyl-2- 99.1 1.7E-09 3.6E-14 106.7 14.6 90 110-250 93-184 (269)
38 KOG0631 Galactokinase [Carbohy 99.1 3E-09 6.6E-14 109.9 16.0 67 322-394 386-452 (489)
39 PRK14615 4-diphosphocytidyl-2- 99.1 4.8E-09 1E-13 104.8 16.9 191 110-403 99-291 (296)
40 TIGR00144 beta_RFAP_syn beta-R 99.0 6E-08 1.3E-12 98.2 21.6 221 110-415 93-323 (324)
41 COG0083 ThrB Homoserine kinase 98.9 6.4E-08 1.4E-12 96.2 18.3 203 111-416 89-297 (299)
42 PF08544 GHMP_kinases_C: GHMP 98.9 4.8E-09 1E-13 84.5 6.5 71 323-400 10-83 (85)
43 PRK14613 4-diphosphocytidyl-2- 98.8 1.5E-07 3.2E-12 94.2 15.8 179 110-397 104-284 (297)
44 PTZ00299 homoserine kinase; Pr 98.8 1E-07 2.2E-12 96.9 13.9 206 110-417 93-323 (336)
45 PRK14610 4-diphosphocytidyl-2- 98.6 1.1E-06 2.4E-11 87.3 14.1 88 110-249 95-184 (283)
46 KOG4644 L-fucose kinase [Carbo 98.5 8.7E-06 1.9E-10 84.7 18.2 206 111-395 703-918 (948)
47 PRK00343 ipk 4-diphosphocytidy 98.4 6.7E-06 1.5E-10 81.3 15.2 89 110-249 98-186 (271)
48 PLN02407 diphosphomevalonate d 98.1 0.00037 8E-09 70.8 19.1 53 111-184 117-170 (343)
49 TIGR01240 mevDPdecarb diphosph 98.0 0.00082 1.8E-08 67.7 20.1 51 111-182 97-147 (305)
50 PRK00650 4-diphosphocytidyl-2- 97.8 0.00022 4.7E-09 71.2 12.8 88 110-247 91-178 (288)
51 COG1685 Archaeal shikimate kin 97.7 0.0023 4.9E-08 62.6 17.5 64 110-184 81-145 (278)
52 COG3407 MVD1 Mevalonate pyroph 96.8 0.11 2.5E-06 52.6 17.9 50 111-181 102-151 (329)
53 PRK05905 hypothetical protein; 96.5 0.046 1E-06 53.8 12.9 87 110-248 97-184 (258)
54 COG1907 Predicted archaeal sug 96.5 0.48 1E-05 47.2 19.6 220 111-416 83-311 (312)
55 COG1947 IspE 4-diphosphocytidy 96.4 0.11 2.4E-06 51.8 15.0 89 107-247 95-183 (289)
56 COG1829 Predicted archaeal kin 96.1 0.19 4.2E-06 49.5 14.3 95 110-247 85-179 (283)
57 PRK04181 4-diphosphocytidyl-2- 95.6 0.067 1.5E-06 52.6 9.5 88 110-248 97-185 (257)
58 COG4542 PduX Protein involved 94.2 1.4 2.9E-05 43.3 13.7 38 111-159 95-132 (293)
59 KOG2833 Mevalonate pyrophospha 92.3 7.5 0.00016 39.4 15.8 54 111-185 117-171 (395)
60 KOG1537 Homoserine kinase [Ami 33.3 1.3E+02 0.0027 30.2 6.5 64 351-416 283-353 (355)
61 PRK14981 DNA-directed RNA poly 27.2 2.4E+02 0.0052 24.1 6.6 79 272-363 32-110 (112)
62 PTZ00009 heat shock 70 kDa pro 27.0 4.2E+02 0.0091 29.6 10.2 6 304-309 579-584 (653)
63 PF11944 DUF3461: Protein of u 26.6 3.5E+02 0.0075 23.8 7.3 20 218-237 44-63 (125)
64 PF06156 DUF972: Protein of un 24.7 4.2E+02 0.0092 22.5 7.6 13 262-274 5-17 (107)
65 KOG3807 Predicted membrane pro 22.8 7.2E+02 0.016 26.0 9.9 52 227-282 173-225 (556)
66 COG1460 Uncharacterized protei 21.1 5.3E+02 0.012 22.4 7.4 76 275-363 36-111 (114)
67 PF09012 FeoC: FeoC like trans 21.0 2.3E+02 0.005 21.6 4.9 40 335-380 19-58 (69)
68 TIGR03545 conserved hypothetic 21.0 5.1E+02 0.011 28.5 9.2 10 242-251 162-171 (555)
No 1
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=100.00 E-value=6.1e-84 Score=624.33 Aligned_cols=387 Identities=64% Similarity=0.970 Sum_probs=339.7
Q ss_pred CceeccCCCceeeeccCCCCCCcHHHHHHHHHHHHHHHHcccchhHHhhhhcCceeEE-EeecCCCccchhHHHHcCCCC
Q 013834 1 MYKLSLKNLTLQAVSLSESRNPFVEYAVQYAVAAAYAIFDKNKKDALHKLLLQGLDIT-ILGCNDFYSYRNQIEARGLPL 79 (435)
Q Consensus 1 ~y~~~~~~~~~~~~~~~~~~N~fve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-i~~dn~fySq~~~~~~~~~~~ 79 (435)
.|+|+++...+++++.+.++|||||.+|+|+++| |.+. .+++.+.+++.|| |++||.||+|++.
T Consensus 66 lY~is~~~~~i~v~~~~~s~NPFve~ai~yvi~y----f~~~---~~~~lc~q~L~Vt~l~sddaY~~qp~s-------- 130 (459)
T KOG4519|consen 66 LYKISLNHLTIQVVSASDSRNPFVEHAIQYVIAY----FHLA---TLHKLCLQGLDVTILGSDDAYSYQPES-------- 130 (459)
T ss_pred eeecccccceeEEEecCCCCCcHHHHHHHHHHHH----hhhc---cchhHHhcCceEEEeecccccccCccc--------
Confidence 4999999999999999999999999999999995 4334 3788899999999 6677777777653
Q ss_pred ChhhhccCCCCcccccccCCCCCCCCCCCCCCCCcChhHHHHHHHHHHHHHHhccccCCCcc--ccCCCCCHHHHHHHHH
Q 013834 80 TPEALAALPPFASITFNADESNGGNCKPEVAKTGLGSSAAMTTAVVAALLHYLGIVNLSSSI--DQQHDGDLDMVHMIAQ 157 (435)
Q Consensus 80 ~~~~l~~~~~f~~~~~~l~~~~g~~~~~~v~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~--~~~~~~~~~~i~~LAq 157 (435)
+..+.+|.+|+++-.. +|+|+||||||||||+|+++++|+.+++.++.+..+ ......+++.||||||
T Consensus 131 ----~~~~~~~~~~~F~~~~------~~eV~KTGLGSSAam~T~lv~~ll~sl~~~~~d~~~k~~k~d~s~~~viHnlAQ 200 (459)
T KOG4519|consen 131 ----LGTLAPFASITFNAAE------KPEVAKTGLGSSAAMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQ 200 (459)
T ss_pred ----ccccCCCCceeeeccc------cccccccCccchHHHHHHHHHHHHHhhcceecCCCccccccCchHHHHHHHHHH
Confidence 3344578888887543 569999999999999999999999999855543222 2245557899999999
Q ss_pred HHHHHHcCCCCCccchhheeeCCeeeeecChhhhhhhh-hhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecC
Q 013834 158 SAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPEVLSSAQ-VAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPG 236 (435)
Q Consensus 158 ~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~~l~~~~-~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg 236 (435)
.|||.+|||+||||||+||+|||++||||+|++|+.++ ....+.+..+++..+...+|+..+..|.||+++.|+|||..
T Consensus 201 ~aHC~AQGKvGSGFDV~aA~yGS~rYrRF~P~lis~lp~~i~~~~~~~el~~~V~k~~W~~~~~~f~LP~~~~L~mGd~~ 280 (459)
T KOG4519|consen 201 TAHCLAQGKVGSGFDVSAAVYGSQRYRRFSPELISFLPQVIVTGLPLNELIGTVLKGKWDNKRTEFSLPPLMNLFMGDGS 280 (459)
T ss_pred HHHHHhcCCccCCcceehhhccceeeeeCCHHHHHHHHHHHhccChhHHHHHHhhhhhcccccccccCCceeeeeeecCC
Confidence 99999999999999999999999999999999999886 33345566677777778889999988999999999999998
Q ss_pred CCCCCcHHHHHHHHHHhhhCchhHHHHHHHHhhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhh
Q 013834 237 TGGSSTPSMVGAVKKWQKSDPQKSQETWKKLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQ 316 (435)
Q Consensus 237 ~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~ 316 (435)
. ||+||+||++|++|++++|+++.++|+.|+..|..+...|.+|+.+++.+...|.++++.|..+. .+
T Consensus 281 g-GSsTp~mV~kVk~Wq~s~~pe~~k~~~~lddansr~~~~l~kl~~l~~~h~d~~~~v~eSl~~~~-----------~~ 348 (459)
T KOG4519|consen 281 G-GSSTPSMVGKVKKWQMSDPPEARKNWQNLDDANSRLETKLNKLSKLAKDHWDVYLRVIESLSVLT-----------IN 348 (459)
T ss_pred C-CCCcHHHHHHHHHHhhcCChhHhhhhcchhhHHHHHHhhhhhhhHhhhhchhHHHHHHhhccccc-----------ch
Confidence 7 99999999999999999999999999999999999999999999999998889999999988632 24
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC--hhHHHH
Q 013834 317 EAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS--GSNVTK 394 (435)
Q Consensus 317 ~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~--~~~l~~ 394 (435)
..+.+++.+++++|..+|.+||.|+++++|+|||+.||.|+|.|+.++|||++.||||||+||+++|+..+. ..++.+
T Consensus 349 ~~~~~e~~E~r~a~~~IRr~~r~it~ea~vdIEP~~QT~lLD~~~sl~GVl~~gvPGAGGfDAif~it~~dvd~~~~~~~ 428 (459)
T KOG4519|consen 349 EAIIKELLEAREAMLRIRRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDVDSGTKLTQ 428 (459)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhHhhhhhcccceEEecccCCCCcceEEEEeecchhHHHHHHh
Confidence 556788899999999999999999999999999999999999999999999999999999999999998854 688999
Q ss_pred HHHhCCceEEeeeeCCCCcEEEecCcchhhH
Q 013834 395 AWSSVNVLALLVREDPHGVSLESCDPRTTEI 425 (435)
Q Consensus 395 ~w~~~gv~~L~~~~~~~Gv~~e~~~~~~~~~ 425 (435)
.|+..+|.+|++++++.||++|+ |+++.++
T Consensus 429 ~w~~~~V~~ldV~~a~~Gv~~E~-dp~t~~~ 458 (459)
T KOG4519|consen 429 AWSSHNVLALDVREAPHGVCLES-DPRTTCI 458 (459)
T ss_pred hhcccCeeEEeeeeCCCcceecc-CCccccc
Confidence 99999999999999999999999 7777554
No 2
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=100.00 E-value=2.7e-80 Score=641.29 Aligned_cols=367 Identities=61% Similarity=0.916 Sum_probs=313.2
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHcccchhHHhhhhcCceeEEEeecCCCccchhHHHHcCCCCChhhhccCCCCcccccc
Q 013834 17 SESRNPFVEYAVQYAVAAAYAIFDKNKKDALHKLLLQGLDITILGCNDFYSYRNQIEARGLPLTPEALAALPPFASITFN 96 (435)
Q Consensus 17 ~~~~N~fve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~dn~fySq~~~~~~~~~~~~~~~l~~~~~f~~~~~~ 96 (435)
..++|||||+||+|+++|+.. ... +.....+++|+|++|||||||++++... .++++|.++...
T Consensus 83 ~~~~n~fv~~ai~~~~~y~~~----~~~---~~~~l~~~~itI~sd~d~ySq~~~~~~~---------~~~~~f~~~~~~ 146 (454)
T TIGR01219 83 NPFVNPFIQYAIAAVHLYFDK----ESL---HKLLLQGLDITILGDNAYYSQPESLGTL---------APFASITFNAAE 146 (454)
T ss_pred CCCCChHHHHHHHHHHHHHHh----ccc---cccccCceEEEEEecCCcccccchhccc---------cccccccccccc
Confidence 478999999999999997654 211 1122568999999999999999998753 455777776666
Q ss_pred cCCCCCCCCCCCCCCCCcChhHHHHHHHHHHHHHHhccccCC-Cc--cccCCCCCHHHHHHHHHHHHHHHcCCCCCccch
Q 013834 97 ADESNGGNCKPEVAKTGLGSSAAMTTAVVAALLHYLGIVNLS-SS--IDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDV 173 (435)
Q Consensus 97 l~~~~g~~~~~~v~KtGLGSSAAlvvalv~ALl~~~~~~~l~-~~--~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~Dv 173 (435)
++ +|+|+|||||||++||+++||+.||+ ..+. .. .......+++.||||||+|||.+|||+|||||+
T Consensus 147 ~~---------e~~K~GLGSSAAvtVa~v~ALl~~~~-~~~~~~~~~~~~~~~~~~~~i~kLA~~ah~~~qGk~GSG~Dv 216 (454)
T TIGR01219 147 KP---------EVAKTGLGSSAAMTTALVAALLHYLG-VVDLSDPDKEGKFGCSDLDVIHNLAQTAHCLAQGKVGSGFDV 216 (454)
T ss_pred CC---------CccccCccHHHHHHHHHHHHHHHHhC-CcccccccccccccccCHHHHHHHHHHHHHhhcCCCCCchhh
Confidence 55 45799999999999999999999998 4321 00 011122378999999999999999999999999
Q ss_pred hheeeCCeeeeecChhhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHh
Q 013834 174 SSAVYGSQRYVRFSPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQ 253 (435)
Q Consensus 174 aaAvyGg~~Y~rf~p~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr 253 (435)
|||+|||++|+||+|.||++++......+|...|.++++.+|+.+++++.+|++++|+||||++ |++|++||++|.+|+
T Consensus 217 AaavyGgi~Y~rfd~~~l~~~~~~~~~~~~~~~L~~~v~~~W~~~i~~l~lP~~l~Llvgdtg~-~ssT~~lV~~V~~~~ 295 (454)
T TIGR01219 217 SAAVYGSQRYRRFSPELISFLQVAITGLPLNEVLGTIVKGKWDNKRTEFSLPPLMNLFMGDPGG-GSSTPSMVGKVKKWQ 295 (454)
T ss_pred hhhhcCceEEEecChhhhhhhhccccccchhhhHHHHhccCCCCceeeccCCCCCEEEEEcCCC-CcCcHHHHHHHHHHH
Confidence 9999999999999999999887211123467778899999999999999999999999999999 999999999999999
Q ss_pred hhCchhHHHHHHHHhhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHH
Q 013834 254 KSDPQKSQETWKKLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGI 333 (435)
Q Consensus 254 ~~~pe~a~~~~~~L~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~ 333 (435)
+++|+.+.++|+.|...|+.++..|.+|.+++.+++..|..+++.+.. ++|..... +.+..+++.|.++
T Consensus 296 ~~~p~~s~~i~~~l~~aN~~~~~~l~~l~~~~~~~~~~y~~~~~~l~~---~~~~~~~~--------~~~~~i~~~i~~~ 364 (454)
T TIGR01219 296 MSDPEESRENWQNLSDANLELETKLNDLSKLAKDHWDVYLRVIKVLTS---EKCVLHAT--------EELLEAREAMLRI 364 (454)
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhhhhhcc---ccchhccc--------ccHHHHHHHHHHH
Confidence 999999999999999999999999999999999889999999887754 23321100 1255899999999
Q ss_pred HHHHHhccccCCCCCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC--hhHHHHHHHhCCceEEeeeeCCC
Q 013834 334 RYHMRLMGEAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS--GSNVTKAWSSVNVLALLVREDPH 411 (435)
Q Consensus 334 r~lLr~lg~~sgv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~--~~~l~~~w~~~gv~~L~~~~~~~ 411 (435)
|++||+|++++||+||||+||+|+|+|++++||+|||+||||||||+|+|+.++. .+.+.+.|++.+|+||++++++.
T Consensus 365 R~~Lr~~~~~sgv~IEp~~~t~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~~~~~~~~~~~~~~W~~~~V~pL~v~~~~~ 444 (454)
T TIGR01219 365 RRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDVDSGTKLTQAWSSHNVLALDVREAPH 444 (454)
T ss_pred HHHHHHhhHhcCCcccCHHHHHHHHHHhhcCCeeEeecCCCCccceEEEEecCChHHHHHHHHHHhhCCEEEEeccccCC
Confidence 9999999999999999999999999999999999999999999999999988764 57899999999999999999999
Q ss_pred CcEEEecCcch
Q 013834 412 GVSLESCDPRT 422 (435)
Q Consensus 412 Gv~~e~~~~~~ 422 (435)
||++|+ |+++
T Consensus 445 G~~~e~-~~~~ 454 (454)
T TIGR01219 445 GVCLES-DPRT 454 (454)
T ss_pred cccccC-CCCC
Confidence 999998 7764
No 3
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=100.00 E-value=5.4e-53 Score=401.37 Aligned_cols=277 Identities=32% Similarity=0.486 Sum_probs=219.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHcccchhHHhhhhcCceeEEEeecCCCccchhHHHHcCCCCChhhhccCCCCcccccc
Q 013834 17 SESRNPFVEYAVQYAVAAAYAIFDKNKKDALHKLLLQGLDITILGCNDFYSYRNQIEARGLPLTPEALAALPPFASITFN 96 (435)
Q Consensus 17 ~~~~N~fve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~dn~fySq~~~~~~~~~~~~~~~l~~~~~f~~~~~~ 96 (435)
...+|||+|..+.|++.| |.+. ++.+++++.++ +|+.||+|+++.-.
T Consensus 57 g~~knsfiEl~~~~Vf~y----F~~~-----~~~c~qnlev~--~ddayy~q~~f~~d---------------------- 103 (337)
T COG3890 57 GIDKNSFIELRSDFVFKY----FAYL-----SQNCFQNLEVF--ADDAYYDQSNFFFD---------------------- 103 (337)
T ss_pred ccCCChHHHHHHHHHHHH----HHhh-----hhhccccceee--cchhhcccccceec----------------------
Confidence 367899999999999994 4322 23446666655 99999999773221
Q ss_pred cCCCCCCCCCCCCCCCCcChhHHHHHHHHHHHHHHh-ccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhh
Q 013834 97 ADESNGGNCKPEVAKTGLGSSAAMTTAVVAALLHYL-GIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSS 175 (435)
Q Consensus 97 l~~~~g~~~~~~v~KtGLGSSAAlvvalv~ALl~~~-~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~Dvaa 175 (435)
.| .|||||||||++|+++..++.++ ..-++ ..+.+||||||+|||.+|||+|||||||+
T Consensus 104 ----~g-------~KtGlGSSAa~~tsLt~~lfls~~~~~nv---------d~k~eIhklaqiAhc~aQggIGSGfDiaa 163 (337)
T COG3890 104 ----DG-------TKTGLGSSAAVATSLTCGLFLSHANATNV---------DEKGEIHKLAQIAHCYAQGGIGSGFDIAA 163 (337)
T ss_pred ----CC-------ccCCCcchhHHHHHHHHHHHHHHhccccc---------hhHHHHHHHHHHHHHHHhCCCCccchhhH
Confidence 13 49999999999999995444443 20111 13689999999999999999999999999
Q ss_pred eeeCCeeeeecChhhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhh
Q 013834 176 AVYGSQRYVRFSPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKS 255 (435)
Q Consensus 176 AvyGg~~Y~rf~p~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~ 255 (435)
|+|||++||||+|..+.+++. +..+.+. ++.|+|||++. +|+|+.||.+|.+|++.
T Consensus 164 A~fGsiiyrRF~p~li~~l~q----------------------ig~~nfg-~y~LmmGd~a~-gSeTvglV~kv~~w~ns 219 (337)
T COG3890 164 AIFGSIIYRRFEPGLIPKLRQ----------------------IGAVNFG-DYYLMMGDQAI-GSETVGLVCKVNKWRNS 219 (337)
T ss_pred hhhcceEEeecCcchhhhhHh----------------------hCccccc-Ceeeeeccccc-CccchHHHHHHHHHhhc
Confidence 999999999999987776641 2233444 69999999999 99999999999999998
Q ss_pred C-chhHHHHHHHHhhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHH
Q 013834 256 D-PQKSQETWKKLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIR 334 (435)
Q Consensus 256 ~-pe~a~~~~~~L~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r 334 (435)
+ |++.. .+++.|. +++..+.. .+.+..+.++.+|
T Consensus 220 ~~peelk----c~de~ns---------------------rvl~l~~~--------------------sLdE~~s~~~~ir 254 (337)
T COG3890 220 ILPEELK----CNDEMNS---------------------RVLNLIKL--------------------SLDESNSKSKAIR 254 (337)
T ss_pred CChHHHH----hHHHHHH---------------------HHHHHHhh--------------------hHHHHHHHHHHHH
Confidence 8 54432 2222222 22221111 0336788889999
Q ss_pred HHHHhccccCCCCCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCChhHHHHHHHhCCceEEeeeeCCCCcE
Q 013834 335 YHMRLMGEAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVTKAWSSVNVLALLVREDPHGVS 414 (435)
Q Consensus 335 ~lLr~lg~~sgv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~~~~l~~~w~~~gv~~L~~~~~~~Gv~ 414 (435)
..||.+++++.+.|||++|+.+++.+.+++||+++-+|||||||++++|..+.. ++.++|+..||.+++++ +++|+|
T Consensus 255 rslrritee~~adiep~kqt~~Ld~i~~l~gvl~~lipgaGggdaif~l~~~~~--e~re~w~~~gi~i~dv~-adeGlr 331 (337)
T COG3890 255 RSLRRITEEGLADIEPIKQTAALDSIFDLLGVLCDLIPGAGGGDAIFLLYRPNI--EAREAWLSKGISIVDVN-ADEGLR 331 (337)
T ss_pred HHHHHHHHHhccccccchhhhhhhhHHhccCceEeecccCCCCceEEEEecccH--HHHHHHHhCCeEEEEcc-cccccc
Confidence 999999999999999999999999999999999999999999999999987654 66779999999999999 888999
Q ss_pred EEec
Q 013834 415 LESC 418 (435)
Q Consensus 415 ~e~~ 418 (435)
.|+-
T Consensus 332 ~Esd 335 (337)
T COG3890 332 FESD 335 (337)
T ss_pred cccC
Confidence 9973
No 4
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=100.00 E-value=6.9e-43 Score=355.96 Aligned_cols=241 Identities=25% Similarity=0.324 Sum_probs=203.6
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCe-eeeecCh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQ-RYVRFSP 188 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~-~Y~rf~p 188 (435)
.|+|||||||++||++.||+.+|+ .++ +++.++++|+.+|+.+|| ++||+|+++++|||+ .|+||++
T Consensus 115 ~k~GLGSSAA~~Va~~~Al~~~~~-~~l----------~~~~l~~lA~~~E~~~~g-~~sg~D~~a~~~GG~i~~~~~~~ 182 (358)
T TIGR01220 115 RKYGLGSSGAVTVATVKALNAFYD-LEL----------SNDEIFKLAMLATAELQP-KGSCGDIAASTYGGWIAYSTFDH 182 (358)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHHHhhhCC-CCCcchhhhhhhCCEEEEecCCH
Confidence 589999999999999999999998 554 889999999999999998 699999999999998 8999999
Q ss_pred hhhhhhhhhhcCCchhhhhhhhccCCCcc-ccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHH
Q 013834 189 EVLSSAQVAVKETPLQEVITGILKGKWDH-ERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKL 267 (435)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~l~~l~~~~W~~-~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L 267 (435)
.++.++... ..+.+++..+|+. .++++++|++++|+|+||+. +++|.++|++|.+++.++|+....+++.+
T Consensus 183 ~~~~~~~~~-------~~~~~~~~~~w~~~~~~~l~~~~~~~l~v~~tg~-~~~T~~~v~~V~~~~~~~~~~~~~~l~~~ 254 (358)
T TIGR01220 183 DWVLQLARR-------VGVDRTLKAPWPGLSIRPLPAPKGLTLLIGWTGS-PASTASLVSDVHRRKWRGSASYQRFLETS 254 (358)
T ss_pred HHHhhhhhc-------cchhhhhccCCCccceeECCCCCCCEEEEEeCCC-CcCcHHHHHHHHHHhhcChHHHHHHHHHH
Confidence 988765421 1145667789987 78899999999999999999 99999999999998887775444433333
Q ss_pred hhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCC
Q 013834 268 SESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVP 347 (435)
Q Consensus 268 ~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~ 347 (435)
++... ++.++|.. +| +..|+++|+++|.+|++|+..+++.
T Consensus 255 ~~i~~---------------------~~~~al~~--------~d-----------~~~lg~~~~~~~~lL~~l~~~~~~~ 294 (358)
T TIGR01220 255 TDCVE---------------------SAITAFET--------GD-----------ITSLQKEIRRNRQELARLDDEVGVG 294 (358)
T ss_pred HHHHH---------------------HHHHHHHh--------CC-----------HHHHHHHHHHHHHHHHHhhcccCCC
Confidence 33222 23444443 33 3489999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC-hhHHHHHHHhCCceEEeeeeCCCC
Q 013834 348 IEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS-GSNVTKAWSSVNVLALLVREDPHG 412 (435)
Q Consensus 348 Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~~l~~~w~~~gv~~L~~~~~~~G 412 (435)
|+||++++|++.+++. |. |||+||||||||+|+|+.++. .+.+.++|+++|+.||+++....|
T Consensus 295 vs~~~l~~li~~a~~~-ga-~aKlsGAGgGg~~ial~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~ 358 (358)
T TIGR01220 295 IETEKLKALCDAAEAY-GG-AAKPSGAGGGDCGIAILDAEADITHVRQRWETAGILPLPLTPYLEG 358 (358)
T ss_pred cCCHHHHHHHHHHhhc-Cc-eecCCCCCCcCEEEEEeCCchhHHHHHHHHHHCCCeEeeeeccCCC
Confidence 9999999999999987 55 999999999999999998665 788999999999999999987665
No 5
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=100.00 E-value=1.8e-36 Score=300.40 Aligned_cols=206 Identities=24% Similarity=0.363 Sum_probs=173.8
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCe-eeeec-C
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQ-RYVRF-S 187 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~-~Y~rf-~ 187 (435)
+|.|||||||++|+++.|+..||+ .++ ++++++++|..+|..+|| ++||+|+++++|||+ .|+++ +
T Consensus 94 ~g~GLGSSAAVsva~i~al~~~~g-~~l----------s~~~l~~la~~~e~~vqG-~~Sg~D~a~~~~gg~v~~~~~~~ 161 (307)
T COG1577 94 IGAGLGSSAAVSVAVIKALSAYFG-VEL----------SPEELAKLANKVELIVQG-KASGIDIATITYGGLVAFKKGFD 161 (307)
T ss_pred CCCCccHHHHHHHHHHHHHHHhcC-CCC----------CHHHHHHHHHHHHHHHcC-CCCcccceEEEeCCEEEEecCCC
Confidence 399999999999999999999998 776 899999999999999999 899999999999999 77774 2
Q ss_pred hhhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHH
Q 013834 188 PEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKL 267 (435)
Q Consensus 188 p~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L 267 (435)
. +++.+|....|+++|||. +.+|+++|+.|.+.++++|+....+++.+
T Consensus 162 ~-------------------------------~~l~~~~~~~~~I~~tg~-~~sT~e~V~~V~~l~~~~~~~~~~~~~~i 209 (307)
T COG1577 162 F-------------------------------EKLEIELLGTLVIGDTGV-PGSTKELVAGVAKLLEEEPEVIDPILDAI 209 (307)
T ss_pred c-------------------------------cccccccCCeEEEEEcCC-cCcHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1 122233222799999999 99999999999999999998888877777
Q ss_pred hhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCC
Q 013834 268 SESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVP 347 (435)
Q Consensus 268 ~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~ 347 (435)
++..+.. ..++.+ +| +..|+++|+.||.+|..||
T Consensus 210 g~~~~~a---------------------~~al~~--------~d-----------~e~lgelm~~nq~LL~~Lg------ 243 (307)
T COG1577 210 GELVQEA---------------------EAALQT--------GD-----------FEELGELMNINQGLLKALG------ 243 (307)
T ss_pred HHHHHHH---------------------HHHHhc--------cc-----------HHHHHHHHHHHHHHHHhcC------
Confidence 7544332 333433 33 3389999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC-hhHHHHHHHhCCceEEee
Q 013834 348 IEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS-GSNVTKAWSSVNVLALLV 406 (435)
Q Consensus 348 Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~~l~~~w~~~gv~~L~~ 406 (435)
|++|++++|+++++++ |++|||+||||||||+|+|..+.+ .+.+..+|.+.++..+..
T Consensus 244 Vs~~~L~~lv~~a~~~-Ga~gaKlTGAGgGGc~IaL~~~~~~~~~l~~~~~~~~i~~~~~ 302 (307)
T COG1577 244 VSTPELDELVEAARSL-GALGAKLTGAGGGGCIIALAKNEEIAETLSNRLEKAGIALLWI 302 (307)
T ss_pred cCcHHHHHHHHHHHhc-CccccccccCCCCceEEEEeccchHHHHHHHHHHhcCcccccc
Confidence 5999999999999998 778999999999999999998644 677888999999877665
No 6
>PLN02677 mevalonate kinase
Probab=100.00 E-value=1.2e-35 Score=304.26 Aligned_cols=235 Identities=20% Similarity=0.250 Sum_probs=185.7
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCcc---ccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCe-eeeec
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSI---DQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQ-RYVRF 186 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~---~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~-~Y~rf 186 (435)
+.|||||||++||+++||+.+++.++++... ......+.++|+++|+.+|+.+|| ++||+|+++++||++ .|+++
T Consensus 141 GaGLGSSAAv~Va~~~AL~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG-~pSGiD~a~s~~Gg~I~f~~~ 219 (387)
T PLN02677 141 GSGLGSSAAFCVALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHG-KPSGIDNTVSTYGNMIKFKSG 219 (387)
T ss_pred CCCccHHHHHHHHHHHHHHHHhCCcccccccccccccChhHHHHHHHHHHHHHHHHhC-CCCchhHHHHhcCCeEEEcCC
Confidence 7999999999999999999999743331100 011234567899999999999999 899999999999999 88776
Q ss_pred ChhhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHH
Q 013834 187 SPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKK 266 (435)
Q Consensus 187 ~p~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~ 266 (435)
+. ++++.|++++|+++||+. +++|..||++|.+.++++|+....+++.
T Consensus 220 ~~-------------------------------~~l~~~~~l~llv~dTgv-~~sT~~lV~~V~~~~~~~p~~~~~il~~ 267 (387)
T PLN02677 220 EL-------------------------------TRLQSNMPLKMLITNTRV-GRNTKALVAGVSERALRHPDAMKSVFNA 267 (387)
T ss_pred Cc-------------------------------eecCCCCCceEEEEECCC-CCcHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 41 244555668999999999 9999999999999999999888887777
Q ss_pred HhhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCC
Q 013834 267 LSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGV 346 (435)
Q Consensus 267 L~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv 346 (435)
++++.+...+.|.+-. +|.... ...+..|+++|+.||.+|+.||+
T Consensus 268 ~~~i~~~a~~al~~~~---------------------------~~~~~~----~~~~~~Lg~lm~~N~~LL~~LGV---- 312 (387)
T PLN02677 268 VDSISEELATIIQSPA---------------------------EDELSI----TEKEEKLKELMEMNQGLLQCMGV---- 312 (387)
T ss_pred HHHHHHHHHHHHhccc---------------------------cccccc----cchHHHHHHHHHHHHHHHHHcCC----
Confidence 7766555433322100 000000 01134899999999999999995
Q ss_pred CCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCC---C-hhHHHHHHHhCCceEEeeeeCCCCcEEEe
Q 013834 347 PIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGD---S-GSNVTKAWSSVNVLALLVREDPHGVSLES 417 (435)
Q Consensus 347 ~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~---~-~~~l~~~w~~~gv~~L~~~~~~~Gv~~e~ 417 (435)
++|+++++++++++. | ++||+||||||||+|+|+.++ + .+++.++|++.|++++.+....+||++.-
T Consensus 313 --S~~~le~iv~~a~~~-~-~~AKlTGAGgGGC~IaL~~~~~~~~~~~~l~~~l~~~G~~~~~~~~g~~Gv~~~~ 383 (387)
T PLN02677 313 --SHSSIETVLRTTLKY-K-LVSKLTGAGGGGCVLTLLPTLLSGTVVDKVIAELESSGFQCFTAGIGGNGVQICY 383 (387)
T ss_pred --CcHHHHHHHHHHHHc-C-CccccccCCCCCEEEEEcccccchhHHHHHHHHHHHCCCeEEEEEeCCCceEEEe
Confidence 899999999999988 4 499999999999999998642 1 56788999999999999999999999874
No 7
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.97 E-value=2.1e-29 Score=247.56 Aligned_cols=238 Identities=21% Similarity=0.248 Sum_probs=190.1
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCe-eeeecCh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQ-RYVRFSP 188 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~-~Y~rf~p 188 (435)
.+.|||||||+.|++..||+...|.++.+..-....+.++++|.++|...||.+|| .+||.|+++|+|||. .|+.-.
T Consensus 142 ~GaGLGSSAa~sv~lAtall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHG-tpSGiDnaV~t~Gg~i~f~kg~- 219 (397)
T KOG1511|consen 142 LGAGLGSSAAISVALATALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHG-TPSGIDNAVCTYGGLISFKKGV- 219 (397)
T ss_pred CcCCcchhHHHHHHHHHHHHHHcccCCCCcchhccccchHHHHHHHHhccceeecC-CCcccchhhhccCceEEeecCc-
Confidence 48999999999999999999988866544211334556789999999999999999 899999999999999 776432
Q ss_pred hhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHh
Q 013834 189 EVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLS 268 (435)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~ 268 (435)
+++.++--|.+++++.||.. |++|..||+.|...+++.|+..+.+|+.++
T Consensus 220 -----------------------------~~~~Lk~~~~L~illtnTrv-~RnTk~lVa~Vr~~~~kfPevi~~i~~aid 269 (397)
T KOG1511|consen 220 -----------------------------EIESLKHLPPLRILLTNTRV-PRNTKALVAGVRELLEKFPEVIKAIFDAID 269 (397)
T ss_pred -----------------------------cceecccCCCceEEEEcccc-CccHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 12223222359999999999 999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCC
Q 013834 269 ESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPI 348 (435)
Q Consensus 269 ~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~I 348 (435)
++..+....|.+ + . +..+.+++ ..|.++|+.|+.+|..||+
T Consensus 270 ~is~ea~~il~~------e----------------~-----~~~~~~~E------q~L~eLi~iNq~LL~alGV------ 310 (397)
T KOG1511|consen 270 EISLEAVWILQR------E----------------N-----DEFSSPKE------QKLEELIRINQDLLDALGV------ 310 (397)
T ss_pred HHHHHHHHHHhc------c----------------c-----ccCCCcHH------HHHHHHHHHhHHHHHHhCC------
Confidence 876654333321 0 0 00011111 1589999999999999996
Q ss_pred CCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCCh----hHHHHHHHhCCceEEeeeeCCCCcEEEecCc
Q 013834 349 EPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSG----SNVTKAWSSVNVLALLVREDPHGVSLESCDP 420 (435)
Q Consensus 349 epp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~~----~~l~~~w~~~gv~~L~~~~~~~Gv~~e~~~~ 420 (435)
++|+++.++..+.+. | +.+|++|||||||+|.|...+.. +.++++.+.+|+.++......+|+++.+.++
T Consensus 311 sH~~le~v~~~t~k~-g-i~sKLTGAGgGGc~itlL~~~~~qe~i~~~ke~L~s~gf~v~~t~lGG~G~~v~s~~~ 384 (397)
T KOG1511|consen 311 SHPSLELVCTTTRKL-G-IHSKLTGAGGGGCVITLLKPGTEQEQIDKWKEELESHGFEVFETELGGPGVSVHSADD 384 (397)
T ss_pred CcHHHHHHHHHHHHh-C-cceecccCCCCceEEEEECCCCchHHHHHHHHHHHhcCcceeeccCCCCceEEEecch
Confidence 899999999999988 6 47899999999999999987753 4455567779999999999999999998765
No 8
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.96 E-value=2.3e-27 Score=263.05 Aligned_cols=226 Identities=12% Similarity=0.129 Sum_probs=171.5
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPE 189 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~ 189 (435)
+++|||||||++||++.||..+++ .++ +++.+.++|+.+|..+|| .||++|+++++|||+.+.++.+.
T Consensus 737 ~GsGLGSSAAlavA~l~AL~~~~g-~~l----------s~~ela~~A~~~E~~lhg-~~g~qDq~~a~~GG~~~i~~~~~ 804 (974)
T PRK13412 737 AGSGLGTSSILAATVLGAISDFCG-LAW----------DKNEICNRTLVLEQLLTT-GGGWQDQYGGVLPGVKLLQTGAG 804 (974)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHHHHHHCC-CCchhhhhhHhcCCeEEEEecCC
Confidence 489999999999999999999998 554 889999999999999998 89999999999999954444331
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCccccccccCCC------CceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHH
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPP------LMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQET 263 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~------~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~ 263 (435)
. ... + .+++++++. .-+|+|+|||. .++|..+|++|.+.+..+++....+
T Consensus 805 ~-~~~-------~---------------~v~~L~~~~~~~~eLe~~LlL~yTGi-tR~T~~iV~~Vv~~~~~~~~~~~~~ 860 (974)
T PRK13412 805 F-AQS-------P---------------LVRWLPDSLFTQPEYRDCHLLYYTGI-TRTAKGILAEIVRSMFLNSTAHLQL 860 (974)
T ss_pred c-ccC-------c---------------ceeecCcchhhhhhccCcEEEEECCC-eeeHHHHHHHHHHHHHhCcHHHHHH
Confidence 0 000 0 111222111 24699999999 9999999999876555566555555
Q ss_pred HHHHhhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhcccc
Q 013834 264 WKKLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEA 343 (435)
Q Consensus 264 ~~~L~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~ 343 (435)
++.|.+.... +.++|.+ +| +.+++++|++++++++.|+.
T Consensus 861 l~~ig~La~e---------------------a~~ALe~--------gD-----------~~~LG~LMn~~w~ll~~L~~- 899 (974)
T PRK13412 861 LHEMKAHALD---------------------MYEAIQR--------GE-----------FEEFGRLVGKTWEQNKALDS- 899 (974)
T ss_pred HHHHHHHHHH---------------------HHHHHHc--------CC-----------HHHHHHHHHHHHHHHHhccC-
Confidence 5554443322 2344443 33 44899999999999999953
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC-hhHHHHHHHhC---Cc-eEEeeeeCCCCcEEEe
Q 013834 344 AGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS-GSNVTKAWSSV---NV-LALLVREDPHGVSLES 417 (435)
Q Consensus 344 sgv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~~l~~~w~~~---gv-~~L~~~~~~~Gv~~e~ 417 (435)
.|++|.+++|++.++. |++|||++|||||||+++|+.++. .+++.+..++. +. +.++++.+.+|+++..
T Consensus 900 ---GVSnp~LD~Li~~A~~--gAlGaKLTGAGGGGcvI~Lak~~~~a~~I~~~L~~~~~~~~~~~~~~~l~~~G~~is~ 973 (974)
T PRK13412 900 ---GTNPAAVEAIIELIKD--YTLGYKLPGAGGGGYLYMVAKDPGAAERIRKILTENAPNPRARFVDMSLSDKGLQVSR 973 (974)
T ss_pred ---CCCCHHHHHHHHHHHc--CCcEEEecccCcccEEEEEECChhhHHHHHHHHHhcccCCceeEEEEEECCCCeEEec
Confidence 6799999999999854 789999999999999999987655 66788777664 33 4458899999998863
No 9
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.96 E-value=1.6e-27 Score=233.70 Aligned_cols=184 Identities=23% Similarity=0.304 Sum_probs=146.0
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCee-eeecCh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQR-YVRFSP 188 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~-Y~rf~p 188 (435)
.++|||||||+++|++.||..+++ .++ +++++.++|+.+|+.++| .+||.|+++++||+++ |.+...
T Consensus 89 ~g~GLGSSaa~~va~~~al~~~~~-~~~----------~~~~l~~~a~~~E~~~~G-~~sG~D~~~~~~Gg~~~~~~~~~ 156 (273)
T TIGR00549 89 PGRGLGSSAAVAVALIRALADYFG-SEL----------SKEELAKLANEAEKIAHG-KPSGIDTATSTYGGPVYFEKGEG 156 (273)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHHHHHhCC-CCchHhHHHHhcCCeEEEEcCCC
Confidence 389999999999999999999998 554 889999999999999999 7999999999999994 432211
Q ss_pred hhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHh
Q 013834 189 EVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLS 268 (435)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~ 268 (435)
..++.+|+.++|+++|++. +++|.+++++|.+++..+++...++++.+.
T Consensus 157 ------------------------------~~~~~~~~~~~lvl~~tg~-~~~T~~~~~~v~~~~~~~~~~~~~~~~~~~ 205 (273)
T TIGR00549 157 ------------------------------EFTKLISLDGYFVIADTGV-SGSTKEAVARVRQLLERFPELIDSIMDAIG 205 (273)
T ss_pred ------------------------------ceeeccCCCeEEEEEECCC-CCcHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 0122233458999999999 999999999998887766655445444443
Q ss_pred hhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCC
Q 013834 269 ESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPI 348 (435)
Q Consensus 269 ~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~I 348 (435)
+... .+++++.. +| +..++++|+++|.+|+.++ +
T Consensus 206 ~~~~---------------------~~~~al~~--------~d-----------~~~lg~l~~~~~~~l~~~~------v 239 (273)
T TIGR00549 206 ELTL---------------------EAKAALQD--------GD-----------VESLGELMNINQGLLKALG------V 239 (273)
T ss_pred HHHH---------------------HHHHHHHh--------CC-----------HHHHHHHHHHHHHHHHHcC------C
Confidence 3221 23344443 33 3389999999999999875 5
Q ss_pred CCHHHHHHHHHHHhcCCceeeeecCCCccceeEEE
Q 013834 349 EPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAV 383 (435)
Q Consensus 349 epp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL 383 (435)
++|++++|++.+++. |++|+|++|||||||+|+|
T Consensus 240 s~p~l~~l~~~~~~~-Ga~gaklsGaG~GG~~i~l 273 (273)
T TIGR00549 240 SHPKLDQLVETARKA-GALGAKLTGAGGGGCMIAL 273 (273)
T ss_pred CcHHHHHHHHHHHHC-CCceeeeccCCCCceEEeC
Confidence 899999999999987 8899999999999999986
No 10
>PRK03926 mevalonate kinase; Provisional
Probab=99.95 E-value=1.1e-25 Score=224.01 Aligned_cols=216 Identities=22% Similarity=0.302 Sum_probs=170.6
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPE 189 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~ 189 (435)
.+.|||||||+++|++.|+..+++ .++ +++++.++|+.+|...+| .+||.|+++++|||+++.+...
T Consensus 86 ~~~GLGSSsA~~~a~~~al~~~~~-~~l----------~~~~l~~la~~~E~~~~G-~~sg~D~~~~~~Gg~~~~~~~~- 152 (302)
T PRK03926 86 VGSGLGSSAAVTVATIGALNRLLG-LGL----------SLEEIAKLGHKVELLVQG-AASPTDTYVSTMGGFVTIPDRK- 152 (302)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHHHHHHcC-CCchHHHHHHhcCCeEEEcCCC-
Confidence 389999999999999999999998 664 888999999999999999 7999999999999984332100
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHhh
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLSE 269 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~~ 269 (435)
++++| .+++++++++. +.+|+.+++.+.+++...|+....+++.+..
T Consensus 153 -------------------------------~l~~~-~~~~vl~~~~~-~~sT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (302)
T PRK03926 153 -------------------------------KLPFP-ECGIVVGYTGS-SGSTKELVANVRKLKEEYPELIEPILSSIGK 199 (302)
T ss_pred -------------------------------cCCCC-CceEEEEECCC-CCcHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 22223 57899999999 9999999999988777666443333222221
Q ss_pred hHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCCC
Q 013834 270 SNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIE 349 (435)
Q Consensus 270 ~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~Ie 349 (435)
.. ..+..++.+ +| +..+++.|+.+|.+++.++ ++
T Consensus 200 ~~---------------------~~~~~al~~--------~d-----------~~~l~~~~~~~~~~~~~~~------~~ 233 (302)
T PRK03926 200 IS---------------------EKGEELILS--------GD-----------YVSLGELMNINQGLLDALG------VS 233 (302)
T ss_pred HH---------------------HHHHHHHhc--------CC-----------HHHHHHHHHHHHHHHHhcC------CC
Confidence 11 112233332 23 3389999999999888765 48
Q ss_pred CHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCChhHHHHHHHhCCceEEeeeeCCCCcEEEec
Q 013834 350 PESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVTKAWSSVNVLALLVREDPHGVSLESC 418 (435)
Q Consensus 350 pp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~~~~l~~~w~~~gv~~L~~~~~~~Gv~~e~~ 418 (435)
+|+++++++.+.+. |++|+|+||||+|||+++|+.++..+++.+.|++.+..++.++.+.+|++++.+
T Consensus 234 ~p~l~~l~~~~~~~-ga~ga~lSGaG~Gg~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~i~~~ 301 (302)
T PRK03926 234 TKELSELIYAARTA-GALGAKITGAGGGGCMVALAAPEKQSEVATAIKIAGGKPIITKITDEGLRIEEV 301 (302)
T ss_pred CHHHHHHHHHHHhC-CCceeeeccCCCCCEEEEEeccccHHHHHHHHHhcCCeEEEEecCCCeeEEEec
Confidence 99999999999877 889999999999999999987666778889999988889999999999999864
No 11
>PTZ00298 mevalonate kinase; Provisional
Probab=99.93 E-value=1e-24 Score=220.01 Aligned_cols=209 Identities=19% Similarity=0.233 Sum_probs=158.9
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCe-eeeecCh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQ-RYVRFSP 188 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~-~Y~rf~p 188 (435)
.+.|||||||+++|++.||..+++ +++ +++++.++|+.+|..+|| .+||.|+++++||+. .|++.+.
T Consensus 105 ~gaGLGSSsA~avA~l~al~~l~~-~~l----------s~~el~~~a~~~E~~~~g-~~sG~D~~~~~~Gg~~~~~~~~g 172 (328)
T PTZ00298 105 PSSGIGASASDVVSLSRALSELYQ-LNL----------TEEEVNLSAFVGEGGYHG-TPSGADNTAATYGGLISYRRVNG 172 (328)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHHHHHhcC-CCChHHHHHHHcCCeEEEecCCC
Confidence 389999999999999999999998 665 889999999999999999 899999999999999 4443221
Q ss_pred hhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHh
Q 013834 189 EVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLS 268 (435)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~ 268 (435)
. ..++++++|+.+.+++++++. +.+|+.+++.|.+.+...|+....+++.++
T Consensus 173 ~---------------------------~~~~~l~~~~~~~lvv~~~~~-~~sT~~~~~~v~~~~~~~p~~~~~~~~~~~ 224 (328)
T PTZ00298 173 K---------------------------SVFKRIAFQQPLYLVVCSTGI-TASTTKVVGDVRKLKENQPTWFNRLLENYN 224 (328)
T ss_pred c---------------------------cceeEecCCCCCeEEEEECCC-chhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 0 023456666778999999999 999999999887766666654433333322
Q ss_pred hhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCC
Q 013834 269 ESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPI 348 (435)
Q Consensus 269 ~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~I 348 (435)
... ..++.++.. +| +..++++|+++|..|+.++ +
T Consensus 225 ~~~---------------------~~~~~al~~--------~d-----------~~~lg~~m~~~~~~l~~~~------v 258 (328)
T PTZ00298 225 ACV---------------------SEAKEALQK--------GN-----------LFRVGELMNANHDLCQKLT------V 258 (328)
T ss_pred HHH---------------------HHHHHHHHc--------CC-----------HHHHHHHHHHHHHHHHHhC------C
Confidence 211 122334432 23 2378999999999999875 3
Q ss_pred CCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC-hhHH----HHHHHhCCceEEe
Q 013834 349 EPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS-GSNV----TKAWSSVNVLALL 405 (435)
Q Consensus 349 epp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~~l----~~~w~~~gv~~L~ 405 (435)
++|++++|++.+++. |++|+|+||||+|||+++|+.+++ .+.+ .+.|...++.++.
T Consensus 259 ~~p~l~~l~~~~~~~-Ga~gaklSGsG~GG~v~al~~~~~~a~~~~~~l~~~~~~~~~~w~~ 319 (328)
T PTZ00298 259 SCRELDSIVQTCRTY-GALGAKMSGTGRGGLVVALAASEDQRDAIAKAVRARCPEAKFVWRY 319 (328)
T ss_pred CcHHHHHHHHHHHhC-CCceeEeccCCCCeEEEEEecchhhHHHHHHHHHHHhhhcCCeEEE
Confidence 899999999999886 899999999999999999987543 3444 4456667766554
No 12
>PRK05101 galactokinase; Provisional
Probab=99.93 E-value=4.2e-24 Score=219.85 Aligned_cols=232 Identities=14% Similarity=0.111 Sum_probs=148.3
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCC---eeeeecC
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGS---QRYVRFS 187 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg---~~Y~rf~ 187 (435)
++|||||||++||++.||..+++ .++ +++.+.++|+.+|..++|..++++|+++++||+ .+|..+.
T Consensus 124 gaGLgSSAA~~va~~~al~~~~~-~~l----------~~~~la~~a~~~E~~~~G~~~G~~Dq~~s~~G~~~~~~~~d~~ 192 (382)
T PRK05101 124 GAGLSSSASLEVAVGQTFQQLYH-LPL----------SGAEIALNGQEAENQFVGCNCGIMDQLISALGKKDHALLIDCR 192 (382)
T ss_pred CCCcchHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHHHHHhcCCCCccHHHHHHHcCCCCeEEEEEcC
Confidence 89999999999999999999998 665 888999999999999999555569999999997 3444332
Q ss_pred hhhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCC-------CcHH-------HHHHHHHHh
Q 013834 188 PEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGS-------STPS-------MVGAVKKWQ 253 (435)
Q Consensus 188 p~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s-------~T~~-------lV~~V~~wr 253 (435)
+ .+.+++++|+++.|+++|++. ++ +|.. .+-.|...+
T Consensus 193 ~----------------------------~~~~~~~~~~~~~~vv~~sg~-~~~l~~~~y~~r~~e~~~A~~~l~~~~l~ 243 (382)
T PRK05101 193 S----------------------------LETKAVPMPEGVAVVIINSNV-KRGLVDSEYNTRRQQCETAARFFGVKALR 243 (382)
T ss_pred C----------------------------CceEEeeCCCCcEEEEEeCCC-CccccccchhHHHHHHHHHHHHhChHhhh
Confidence 2 134466778889999999998 76 3442 111111111
Q ss_pred hhCchhHHHHHHHHhhhHHHH-HHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHH
Q 013834 254 KSDPQKSQETWKKLSESNSAL-ETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLG 332 (435)
Q Consensus 254 ~~~pe~a~~~~~~L~~~n~~~-~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~ 332 (435)
...++.... .+....+.+ .+.+..+. +.. ...+..+++.. +| +..++++|++
T Consensus 244 ~~~~~~~~~---~~~~l~~~~~~r~~h~i~----E~~-rv~~a~~al~~--------~d-----------~~~lG~Lm~~ 296 (382)
T PRK05101 244 DVTLEQFNA---VAAELDPVVAKRARHVIT----ENA-RTLEAASALAA--------GD-----------LKRMGELMAE 296 (382)
T ss_pred cCCHHHHHH---HHhhCCHHHHHHHHHHhH----HHH-HHHHHHHHHHc--------CC-----------HHHHHHHHHH
Confidence 111111000 000001111 01110000 000 00122233322 33 4489999999
Q ss_pred HHHHHHhccccCCCCCCCHHHHHHHHHHHhcCCc-eeeeecCCCccceeEEEecCCChhHHHH----HHHh-CCceE--E
Q 013834 333 IRYHMRLMGEAAGVPIEPESQTQLLNATMDMEGV-LLAGVPGAGGFDAVFAVTLGDSGSNVTK----AWSS-VNVLA--L 404 (435)
Q Consensus 333 ~r~lLr~lg~~sgv~Iepp~lt~Lld~a~~~~Gv-lgakv~GAGGGD~iiaL~~~~~~~~l~~----~w~~-~gv~~--L 404 (435)
+|..||. ...|++|+++.|++.|++.+|+ +|||++|||+|||+++|+..+..+++.+ ++.+ .++.+ +
T Consensus 297 sh~~lr~-----~~~vS~~eld~lv~~a~~~~Ga~gGakltGaG~GG~~ial~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 371 (382)
T PRK05101 297 SHASMRD-----DFEITVPQIDTLVEIVKAVIGDQGGVRMTGGGFGGCIVALVPEELVEAVRQAVAEQYEAKTGLKETFY 371 (382)
T ss_pred HhHHHHh-----hcCCCCHhHHHHHHHHHhccCCcceEEeccCCCccEEEEEEcHHHHHHHHHHHHHHHHHhhCCCCeEE
Confidence 9999985 2247999999999999998787 4789999999999999987765545544 3332 34443 2
Q ss_pred eeeeCCCCcEE
Q 013834 405 LVREDPHGVSL 415 (435)
Q Consensus 405 ~~~~~~~Gv~~ 415 (435)
.++ ..+|+++
T Consensus 372 ~~~-~~~Ga~~ 381 (382)
T PRK05101 372 VCK-ASQGAGQ 381 (382)
T ss_pred EEe-cCCCccc
Confidence 333 4567653
No 13
>PRK05322 galactokinase; Provisional
Probab=99.93 E-value=4.9e-24 Score=219.66 Aligned_cols=235 Identities=16% Similarity=0.094 Sum_probs=149.6
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCC---eeeeecC
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGS---QRYVRFS 187 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg---~~Y~rf~ 187 (435)
++|||||||++||++.||..+++ .++ +++.+.++|+.+|...+|+.++++|+++++||+ .+|..|.
T Consensus 124 gsGLgSSAA~~va~~~al~~~~~-~~l----------~~~~la~~a~~~E~~~~G~~sG~mDq~as~~G~~~~~~~~d~~ 192 (387)
T PRK05322 124 GAGLSSSASIELLTGVILKDLFN-LDL----------DRLELVKLGQKTENEFIGVNSGIMDQFAIGMGKKDHAILLDCN 192 (387)
T ss_pred CCCccHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHHHhccCCCCcchHHHHHHHhccCCeEEEEecC
Confidence 89999999999999999999998 665 889999999999999999544449999999998 3444332
Q ss_pred hhhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcH------------HHHHHHHHHh--
Q 013834 188 PEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTP------------SMVGAVKKWQ-- 253 (435)
Q Consensus 188 p~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~------------~lV~~V~~wr-- 253 (435)
+ .+.+..|+++ .++.|+++||+. +++|. ..|+.|.+.+
T Consensus 193 ~--------------------------~~~~~~~~~~-~~~~lvv~dsg~-~~~~~~~~yn~r~~e~~~a~~~l~~~~~~ 244 (387)
T PRK05322 193 T--------------------------LEYEYVPLDL-GDYVIVIMNTNK-RRELADSKYNERRAECEKALEELQKKLDI 244 (387)
T ss_pred C--------------------------CceEEeccCC-CCeEEEEEECCC-ccccCcchhhHHHHHHHHHHHHHhhhcCc
Confidence 2 1112223332 357899999999 88765 6666665321
Q ss_pred ----hhCchhHHHHHHHHhhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHH
Q 013834 254 ----KSDPQKSQETWKKLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDA 329 (435)
Q Consensus 254 ----~~~pe~a~~~~~~L~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~ 329 (435)
..+++....+...+. .+.+ .+++.....+.. .-...+++|.. +| +..|+++
T Consensus 245 ~~l~~~~~~~~~~~~~~~~--~~~~---~~r~~h~v~e~~-r~~~~~~al~~--------~d-----------~~~lg~l 299 (387)
T PRK05322 245 KSLGELTEEEFDEYSYLIK--DETL---LKRARHAVTENQ-RTLKAVKALKA--------GD-----------LEKFGRL 299 (387)
T ss_pred cchhcCCHHHHHHHHhhcC--CHHH---HHHHHHHHHHHH-HHHHHHHHHHh--------CC-----------HHHHHHH
Confidence 111111111100000 0000 011111111100 00122333332 33 3389999
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCChhHH----HHHHHhC-CceEE
Q 013834 330 MLGIRYHMRLMGEAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNV----TKAWSSV-NVLAL 404 (435)
Q Consensus 330 i~~~r~lLr~lg~~sgv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~~~~l----~~~w~~~-gv~~L 404 (435)
|+++|..|++-- .+++|+++.|++.|++.+|++|+|++|||+|||+++|+..+..+.+ .+.+.+. |..|.
T Consensus 300 m~~sh~~L~~~y-----~~s~~eld~lv~~a~~~~Ga~garlsGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~ 374 (387)
T PRK05322 300 MNASHVSLRDDY-----EVTGLELDTLVEAAWKQEGVLGARMTGAGFGGCAIAIVKKDKVEAFKENVGKAYEEKIGYAAS 374 (387)
T ss_pred HHHhhHHHHhhh-----cCCCHhHHHHHHHHHhcCCccEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999998522 4688999999999976679999999999999999999876654444 3444432 44443
Q ss_pred --eeeeCCCCcEE
Q 013834 405 --LVREDPHGVSL 415 (435)
Q Consensus 405 --~~~~~~~Gv~~ 415 (435)
.++ ...|+++
T Consensus 375 ~~~~~-~~~Ga~~ 386 (387)
T PRK05322 375 FYVAE-IGDGARE 386 (387)
T ss_pred EEEEe-cCCCccc
Confidence 333 3457653
No 14
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.2e-23 Score=211.64 Aligned_cols=241 Identities=19% Similarity=0.194 Sum_probs=171.1
Q ss_pred HHHcCCCCChhhhccCCCCcccccccCCCCCCCCCCCCCCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHH
Q 013834 72 IEARGLPLTPEALAALPPFASITFNADESNGGNCKPEVAKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDM 151 (435)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~f~~~~~~l~~~~g~~~~~~v~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~ 151 (435)
++..|..++..++ .|.+++. .+.||+||||+.|++..||..+++ +++ ++..
T Consensus 106 l~~~g~~~~G~~i-------~i~gnIP-----------~GaGLSSSAAleva~~~al~~l~~-~~~----------~k~~ 156 (390)
T COG0153 106 LQKRGYAFTGLDI-------VISGNIP-----------IGAGLSSSAALEVAVALALQRLFN-LPL----------DKAE 156 (390)
T ss_pred HHhcCCCcCCeeE-------EEecCCC-----------CCCCcCchHHHHHHHHHHHHHHhC-CCC----------CHHH
Confidence 3445555554444 5555554 289999999999999999999998 776 8999
Q ss_pred HHHHHHHHHHHHcCCCCCccchhheeeCC---eeeeecChhhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCC-
Q 013834 152 VHMIAQSAHCIAQGKIGSGFDVSSAVYGS---QRYVRFSPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPL- 227 (435)
Q Consensus 152 i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg---~~Y~rf~p~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~- 227 (435)
|.+++|.|+...-|-+.+++|+++++||- .+|..|.+ -+.+++++|..
T Consensus 157 la~i~q~AEn~fvGvn~G~mDQ~~s~~G~~~~al~ld~~~----------------------------l~~~~~~~p~~~ 208 (390)
T COG0153 157 LAKIAQVAENQFVGVNCGIMDQLASAFGKKDHALLLDCRT----------------------------LEYEPVPFPVGG 208 (390)
T ss_pred HHHHHHHHHhhccCCcCchHHHHHHHhCCCCcEEEEEccc----------------------------CceEEeccCccc
Confidence 99999999999999999999999999994 35544321 14567788876
Q ss_pred ceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHH-HhhhHHHHHHHHHHHHhHHHHhHHHHHH----------HH
Q 013834 228 MTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKK-LSESNSALETQLNMLSKLAEEHWNAYKQ----------VI 296 (435)
Q Consensus 228 ~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~-L~~~n~~~~~~L~~l~~l~~~~~~~y~~----------~i 296 (435)
+.+++.+|+. ++. ++.....-|+..++++.+.+.. +...-.-..+.+..+......++..|++ ++
T Consensus 209 ~~ivI~ns~v-kr~---la~seYn~Rr~ece~A~~~l~~~~~~L~d~~~~~~~~~~~~i~~~~~~~rRa~hvv~En~Rvl 284 (390)
T COG0153 209 VSIVIVNSNV-KRE---LADSEYNERRAECEEAAEFLGVSIKSLRDVTDEEFAALQAEIEVDPKIARRARHVVTENQRVL 284 (390)
T ss_pred eEEEEecCCC-ccc---cchhHHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHhhhhhcccchHHHHHHHHHHhHHHHHH
Confidence 8999999998 654 5667777787778777664433 0000000011111111111112333333 23
Q ss_pred HHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHhcCCceeeeecCCCc
Q 013834 297 ESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGG 376 (435)
Q Consensus 297 ~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGG 376 (435)
++...|.. + .|.+++++|++.|..||+ .++|+.|+++.|++.+....|++|++++|||+
T Consensus 285 ~a~~Al~~-----~-----------dl~~fG~Lm~~SH~slrd-----dyevt~pElD~lve~a~~~~G~~GaRmTGaGf 343 (390)
T COG0153 285 EAAKALRS-----G-----------DLTEFGELMNESHESLRD-----DYEVTCPELDTLVEIALAAGGAYGARMTGAGF 343 (390)
T ss_pred HHHHHHHc-----C-----------CHHHHHHHHHHHHHHHHh-----cccccchhHHHHHHHHHHcCCcccceecCCCC
Confidence 33322211 2 266999999999999999 55799999999999999888999999999999
Q ss_pred cceeEEEecCCChhHHHH
Q 013834 377 FDAVFAVTLGDSGSNVTK 394 (435)
Q Consensus 377 GD~iiaL~~~~~~~~l~~ 394 (435)
|||+|+|+..+..+.+.+
T Consensus 344 GGc~IaLv~~~~v~~~~e 361 (390)
T COG0153 344 GGCVIALVPNDDVEAVAE 361 (390)
T ss_pred CceEEEEechhhHHHHHH
Confidence 999999998776444443
No 15
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=99.92 E-value=7.9e-24 Score=218.08 Aligned_cols=215 Identities=15% Similarity=0.096 Sum_probs=143.3
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCC---eeeeecC
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGS---QRYVRFS 187 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg---~~Y~rf~ 187 (435)
++|||||||++||++.||..+++ .++ +++++.++|+.+|..++|..+|++|+++++||+ .++..|.
T Consensus 122 gsGLgSSAA~~vA~~~al~~~~~-~~~----------~~~~l~~~a~~~E~~~~G~~~g~~Dq~~s~~G~~~~~l~~~~~ 190 (386)
T TIGR00131 122 GSGLSSSAAFECAVGAVLQNMGH-LPL----------DSKQILLRIQVAENHFVGVNCGIMDQAASVLGKEDHALLVECR 190 (386)
T ss_pred CCCcchHHHHHHHHHHHHHHHcC-CCC----------CHHHHHHHHHHHhcCccCCCcchHHHHHHHhccCCcEEEEEcC
Confidence 89999999999999999999998 554 888999999999999999889999999999998 3444443
Q ss_pred hhhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCC-CceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHH-
Q 013834 188 PEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPP-LMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWK- 265 (435)
Q Consensus 188 p~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~-~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~- 265 (435)
+ .+.+++++|+ +++|+|+||+. +++|....- +-|+..++.+.++..
T Consensus 191 ~----------------------------~~~~~~~~~~~~~~lvv~~s~~-~~~t~~~~y---~~r~~e~~~a~~~l~~ 238 (386)
T TIGR00131 191 S----------------------------LKATPFKFPQLGIAFVIANTNV-KRTLAPSNY---NTRRQECTTAANFLAA 238 (386)
T ss_pred C----------------------------CceeeecCCCCCeEEEEEeCCC-ccccccchh---HHHHHHHHHHHHHhcc
Confidence 2 1234566776 79999999999 888763210 001111111111000
Q ss_pred ----HHhhhHHHH-H---HHHHHHHhHH--------HHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHH
Q 013834 266 ----KLSESNSAL-E---TQLNMLSKLA--------EEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDA 329 (435)
Q Consensus 266 ----~L~~~n~~~-~---~~L~~l~~l~--------~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~ 329 (435)
.+.+.++.. . +.+..+.++. .+.. ...+++++|.+ +| +..|+++
T Consensus 239 ~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~-rv~~~~~al~~--------~d-----------~~~lG~l 298 (386)
T TIGR00131 239 TDKGALRDFMNEYFARYIARLTKMLPLVEERAKHVVSENL-RVLKAVKAMKD--------ND-----------FKQFGAL 298 (386)
T ss_pred ccccchhhCCHHHHhhhHhhHhhcCHHHHhhHheeehHHH-HHHHHHHHHHh--------Cc-----------HHHHHHH
Confidence 011111100 0 1111111111 1110 01123333332 33 4489999
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCChhHHH
Q 013834 330 MLGIRYHMRLMGEAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVT 393 (435)
Q Consensus 330 i~~~r~lLr~lg~~sgv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~~~~l~ 393 (435)
|+++|..|+++- .+++|+++.|++.+...+|++|||++|||+|||+++|+..+..+++.
T Consensus 299 m~~sh~~l~~~~-----~vs~peld~lv~~a~~~~GAlGakltGaG~GG~vial~~~~~~~~v~ 357 (386)
T TIGR00131 299 MNESHASCDDDY-----ECTCPEIDELVCSAALVNGSGGSRMTGAGFGGCTVHLVPNENVDKVR 357 (386)
T ss_pred HHHhhHHHHHhc-----CCCCHHHHHHHHHHHhcCCCcEEEEecCCCceEEEEEEcHHHHHHHH
Confidence 999999999852 47999999999987666799999999999999999998765544333
No 16
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.91 E-value=7.5e-23 Score=197.61 Aligned_cols=229 Identities=16% Similarity=0.171 Sum_probs=174.7
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPE 189 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~ 189 (435)
+++|||||+|++|+|+.|+..|.+ ..+ ++..|..+|...|...-+..|+.+|+++|+|||..|..|.++
T Consensus 100 ~GSGLGSSSa~vvaLl~a~~~~kg-~~~----------~~~~LA~eAy~IER~~l~~~gG~QDqYaaA~GGFnfMEf~~~ 168 (333)
T COG2605 100 PGSGLGSSSAFVVALLNALHAWKG-ESL----------GPYELAREAYEIEREDLKIVGGKQDQYAAAFGGFNFMEFRGN 168 (333)
T ss_pred CCCCCCchHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHHHHHHhccccccccHHHHHhCCceEEEEcCC
Confidence 499999999999999999999998 443 889999999999999889999999999999999999988764
Q ss_pred ---hhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHH
Q 013834 190 ---VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKK 266 (435)
Q Consensus 190 ---~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~ 266 (435)
.++++. -..|- .. .|. -++++.+||. .+++...+.+-.+...
T Consensus 169 ~~V~v~pL~----------------i~~e~--~~--Ele--~~~lL~yTGi-~R~Ss~V~~dQ~~~~~------------ 213 (333)
T COG2605 169 GEVVVNPLR----------------INRER--TA--ELE--ARLLLYYTGI-TRQSSEVIEDQVRNVV------------ 213 (333)
T ss_pred CcEEEeecc----------------cchhH--HH--HHH--hceEEEEecc-ccchhHHHHHHHHHhh------------
Confidence 122111 00110 00 122 5899999999 8776666544332222
Q ss_pred HhhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCC
Q 013834 267 LSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGV 346 (435)
Q Consensus 267 L~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv 346 (435)
+..++..+++.+|++++.+ +.+++-. +| +.++++.|+++++..|.|+.
T Consensus 214 --~~~~~~~e~~~~mk~~A~~-------~~~al~~--------nd-----------~~~f~~~l~~gW~~KK~ls~---- 261 (333)
T COG2605 214 --DGDEETLEALHEMKALAYE-------MKDALVR--------ND-----------IPEFGQILDRGWEAKKKLSS---- 261 (333)
T ss_pred --cccHHHHHHHHHHHHHHHH-------HHHHHHh--------cc-----------hHHHHHHHHhHHHhhhhhcc----
Confidence 2222234455555544432 2233322 34 33899999999999999998
Q ss_pred CCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCChhHHHHHHHhCCceEEeeeeCCCCcEEEe
Q 013834 347 PIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVTKAWSSVNVLALLVREDPHGVSLES 417 (435)
Q Consensus 347 ~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~~~~l~~~w~~~gv~~L~~~~~~~Gv~~e~ 417 (435)
.|+.+.++++++.|.+. |++|||+.||||||.++.++.+.....|.+++...+.....+.++.+|.|+.-
T Consensus 262 ~ISN~~IDriy~~A~~~-GA~~gKl~GaG~gGFllf~~~p~k~~~l~r~l~~~~~~~~~~~Fd~~Gsr~i~ 331 (333)
T COG2605 262 RISNDAIDRIYELALKN-GAYGGKLSGAGGGGFLLFFCDPSKRNELARALEKEQGFVVDTSFDKEGSRIIF 331 (333)
T ss_pred CcCcHHHHHHHHHHHhc-CchhceeeccCCccEEEEEeCccchHHHHHHHHHhcCCeEEEEecCCCeEEEe
Confidence 89999999999999987 89999999999999988887665588899999999888888999999999864
No 17
>PRK00555 galactokinase; Provisional
Probab=99.91 E-value=8.6e-23 Score=208.79 Aligned_cols=236 Identities=18% Similarity=0.144 Sum_probs=148.5
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCc-cchhheeeCCe---eeee
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSG-FDVSSAVYGSQ---RYVR 185 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG-~DvaaAvyGg~---~Y~r 185 (435)
.++|||||||++||++.||..+++ .++ +++.+.++|+.+|..++| ..|| +|+++++||+. ++.+
T Consensus 102 ~g~GLgSSAA~~va~~~al~~~~~-~~~----------~~~~la~~a~~aE~~~~G-~~~G~~Dq~as~~G~~~~~~~~d 169 (363)
T PRK00555 102 IGSGLSSSAALECAVLGAVGAATG-TRI----------DRLEQARLAQRAENEYVG-APTGLLDQLAALFGAPKTALLID 169 (363)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHHHHhhCC-CCCChhHHHHHHhCCCCeEEEEE
Confidence 489999999999999999999998 665 889999999999999999 5555 89999999974 6666
Q ss_pred cChhhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCC---CceEEEEecCCCCCCcH--------HHHHHHHHHhh
Q 013834 186 FSPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPP---LMTLLLGEPGTGGSSTP--------SMVGAVKKWQK 254 (435)
Q Consensus 186 f~p~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~---~~~Lllgdtg~~~s~T~--------~lV~~V~~wr~ 254 (435)
|.+. .++++++|+ ++.|+++|++. +..|. ..+..+.+...
T Consensus 170 ~~~~----------------------------~~~~v~~~~~~~~~~lvv~~s~~-~~~~~~~~y~~rr~~~~~~~~~~~ 220 (363)
T PRK00555 170 FRDL----------------------------TVRPVAFDPDAAGVVLLLMDSRA-RHRHAGGEYAARRASCERAAADLG 220 (363)
T ss_pred cCCC----------------------------cEEEeccCCCcCceEEEEEcCCC-cccccchhhHHHHHHHHHHHHHhC
Confidence 6431 123444443 46799999999 87653 22333322110
Q ss_pred --hCchhHHHHHHHHhhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHH
Q 013834 255 --SDPQKSQETWKKLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLG 332 (435)
Q Consensus 255 --~~pe~a~~~~~~L~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~ 332 (435)
.-++...+.++.+...-. ....+++.....+.. .-..++++|.+ +| +..++++|++
T Consensus 221 ~~~lr~~~~~~~~~~~~~~~--~~~~~r~~h~~~e~~-~v~~~~~al~~--------gd-----------~~~lg~lm~~ 278 (363)
T PRK00555 221 VSSLRAVQDRGLAALGAIAD--PIDARRARHVLTENQ-RVLDFAAALAD--------SD-----------FTAAGQLLTA 278 (363)
T ss_pred ccchhcCCHHHHHHHHhcCC--hHHHHHHHHHHHHHH-HHHHHHHHHHc--------CC-----------HHHHHHHHHH
Confidence 000000011111111000 000111111111110 01123333332 33 3489999999
Q ss_pred HHHHHHhccccCCCCCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCChh----HHHHHHHhC-CceE--Ee
Q 013834 333 IRYHMRLMGEAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGS----NVTKAWSSV-NVLA--LL 405 (435)
Q Consensus 333 ~r~lLr~lg~~sgv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~~~----~l~~~w~~~-gv~~--L~ 405 (435)
+|+.||. ...|++|+++.|++.+++. |++|+|++|||||||+++|+..+..+ .+.++|.+. +..| +.
T Consensus 279 ~h~~lr~-----~~~vS~~~ld~l~~~a~~~-Ga~GaklsGaG~Gg~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~ 352 (363)
T PRK00555 279 SHASMRD-----DFEITTERIDLIADSAVRA-GALGARMTGGGFGGCVIALVPADRAEDVADTVRRAAVTAGYPEPAVSR 352 (363)
T ss_pred hhHHHHh-----hcCCCChhHHHHHHHHHhc-CCeEEEECCCCccCeEEEEEchhHHHHHHHHHHHHHHHccCCCCcEEE
Confidence 9999993 2247999999999999885 99999999999999999998765433 444566554 4433 33
Q ss_pred eeeCCCCcEE
Q 013834 406 VREDPHGVSL 415 (435)
Q Consensus 406 ~~~~~~Gv~~ 415 (435)
++ ...|++.
T Consensus 353 ~~-~~~g~~~ 361 (363)
T PRK00555 353 TY-AAPGAGE 361 (363)
T ss_pred Ee-cCCCccc
Confidence 33 3456653
No 18
>PLN02521 galactokinase
Probab=99.89 E-value=2.4e-22 Score=212.33 Aligned_cols=231 Identities=16% Similarity=0.189 Sum_probs=152.4
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeC--Ce-eeeec
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYG--SQ-RYVRF 186 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyG--g~-~Y~rf 186 (435)
.+.|||||||++||++.|++.+++ .++ +++.+.++|+.+|..+++ ++|++|+++++|| ++ .+..|
T Consensus 160 ~gsGLgSSAA~~vA~~~al~~~~~-~~l----------~~~~la~la~~~E~~~g~-~~g~mDq~as~~g~~g~al~~d~ 227 (497)
T PLN02521 160 TGSGLSSSAALVCSAAIAIMAALG-LNF----------TKKEVAQFTCKCERHIGT-QSGGMDQAISIMAQQGVAKLIDF 227 (497)
T ss_pred CCCCcchHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHHhCccCC-CCChHHHHHHHhcCCCcEEEEec
Confidence 489999999999999999999998 555 889999999999997655 8999999999999 55 66666
Q ss_pred ChhhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHH
Q 013834 187 SPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKK 266 (435)
Q Consensus 187 ~p~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~ 266 (435)
.| .+++++++|.++.|++++++. ++....++..-++-|...++.+..+...
T Consensus 228 ~~----------------------------l~~~~v~~p~~~~~vv~~s~v-~~~k~~~a~~~Yn~R~~ec~~Aa~~L~~ 278 (497)
T PLN02521 228 NP----------------------------VRATDVQLPAGGTFVIANSLA-ESNKAVTAATNYNNRVVECRLAAIVLAV 278 (497)
T ss_pred CC----------------------------CceEEeecCCCcEEEEEECCC-cccccccccccccHHHHHHHHHHHHHHh
Confidence 44 134567788899999999997 7764444433444444444444433210
Q ss_pred ---------------HhhhHHHH--------------------------HHHHHHHH-----hHHH------------Hh
Q 013834 267 ---------------LSESNSAL--------------------------ETQLNMLS-----KLAE------------EH 288 (435)
Q Consensus 267 ---------------L~~~n~~~--------------------------~~~L~~l~-----~l~~------------~~ 288 (435)
|.+..... .+.+..+. ++.. +.
T Consensus 279 ~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (497)
T PLN02521 279 KLGMSAEEAISKVKTLSDVEGLCVSFAGSHGSSDPAVAVKELLHEGPYTAEEIEEILGESLTSIFKNSPTSLAVLKAAKH 358 (497)
T ss_pred hcCCcchhcccccCCHHHHHHHHhhhcccccchhhHHHhhhhhccccCCHHHHHHHhCCcHHHHhhccccccccccccch
Confidence 11110000 00011100 0000 00
Q ss_pred HHHHHHHH----------HHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCCCCHHHHHHHH
Q 013834 289 WNAYKQVI----------ESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIEPESQTQLLN 358 (435)
Q Consensus 289 ~~~y~~~i----------~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~Iepp~lt~Lld 358 (435)
...|+++. ++...+.. ++.. + ..+..++++|+++|..||.+. .|++|+++.|++
T Consensus 359 ~~l~~Ra~Hvv~E~~RV~~~~~al~~-----~~~~--~----~~~~~lg~lm~~sh~slr~~~-----~vS~~elD~lv~ 422 (497)
T PLN02521 359 FKLHQRAVHVYSEAKRVHAFRDTVSS-----SLSE--E----EKLKKLGDLMNESHYSCSVLY-----ECSCPELEELVK 422 (497)
T ss_pred hHHhhhhhheecHHHHHHHHHHHHHh-----cCcc--c----hHHHHHHHHHHHHHHHHhhcc-----CCCcHHHHHHHH
Confidence 12222222 22211110 1000 0 125689999999999999975 589999999999
Q ss_pred HHHhcCCceeeeecCCCccceeEEEecCCChhH----HHHHHHh
Q 013834 359 ATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSN----VTKAWSS 398 (435)
Q Consensus 359 ~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~~~~----l~~~w~~ 398 (435)
.|.+. |++|||++|||||||+++|+..+..+. +.+.+.+
T Consensus 423 ~a~~~-Ga~GaRltGaG~GG~~i~lv~~~~~~~~~~~l~~~y~~ 465 (497)
T PLN02521 423 VCRDN-GALGARLTGAGWGGCAVALVKEAIVPQFILALKEKFYK 465 (497)
T ss_pred HHHhc-CCcEEEECCCCCCeEEEEEECHHHHHHHHHHHHHHHHh
Confidence 99987 999999999999999999997654433 4445544
No 19
>PLN02865 galactokinase
Probab=99.89 E-value=1.2e-21 Score=203.14 Aligned_cols=220 Identities=17% Similarity=0.121 Sum_probs=147.8
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhhee---eCCeeeeec
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAV---YGSQRYVRF 186 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAv---yGg~~Y~rf 186 (435)
.++|||||||++||++.||+.+++ .++ +++.+.++||.+|...+|+.++++|+++++ +|+..|..|
T Consensus 142 ~gsGLsSSAAl~va~~~al~~~~~-~~~----------~~~~la~~a~~~E~~~~G~~~G~mDQ~as~~~~~g~~~~iDf 210 (423)
T PLN02865 142 DSSGLSSSAAVGVAYLLALENANN-LTV----------SPEDNIELDRLIENEYLGLRNGILDQSAILLSRYGCLTFMDC 210 (423)
T ss_pred CCCcccHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHHHHHhcCCCCccccHHHHHhcccCceEEEEc
Confidence 399999999999999999999998 554 889999999999999999666669999954 557788887
Q ss_pred ChhhhhhhhhhhcCCchhhhhhhhccCCCccccccccCC-----CCceEEEEecCCCCCCcHHHH-HHHHHHhhhCchhH
Q 013834 187 SPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLP-----PLMTLLLGEPGTGGSSTPSMV-GAVKKWQKSDPQKS 260 (435)
Q Consensus 187 ~p~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp-----~~~~Lllgdtg~~~s~T~~lV-~~V~~wr~~~pe~a 260 (435)
.+- .++..|+++| .++.|++.||+. .. .++ ..-++-|...++.+
T Consensus 211 ~~l--------------------------~~~~vpl~~~~~~~~~~~~ivv~~s~~-~h---~l~~~~~Yn~Rr~Ec~~a 260 (423)
T PLN02865 211 KTL--------------------------DHKLVSLQFQQPGGEKPFKILLAFSGL-RH---ALTNKPGYNLRVSECQEA 260 (423)
T ss_pred cCC--------------------------CcceeecCcccccCCCCeEEEEEeCCC-ch---hhcccchhhHHHHHHHHH
Confidence 541 0122244432 468899999998 54 233 23344455445444
Q ss_pred HHHHHHHhhhHH--HHHHHHHHHH--hHHH----HhHHHHHHH----------HHHHhhhhhhhhhhcCCchhhHHHHHh
Q 013834 261 QETWKKLSESNS--ALETQLNMLS--KLAE----EHWNAYKQV----------IESCSKLKSEKWMEQATEPTQEAVVKS 322 (435)
Q Consensus 261 ~~~~~~L~~~n~--~~~~~L~~l~--~l~~----~~~~~y~~~----------i~al~~l~~~~w~~~d~~~~~~~~~~~ 322 (435)
.+++. +... .....|+++. .+.. -.+..|+++ .++...+.. +|
T Consensus 261 a~~l~---~~~~~~~~~~~Lr~~~~~~~~~~~~~l~~~l~~Ra~Hv~~E~~Rv~~~~~al~~-----~d----------- 321 (423)
T PLN02865 261 ARFLL---EASGNDELEPLLCNVEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKGVEAWAS-----GN----------- 321 (423)
T ss_pred HHHHH---HhcCCccchhhhhcCCHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHh-----CC-----------
Confidence 44321 1000 0011122111 0000 011123333 333332222 22
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCChhHHHH
Q 013834 323 LLGARDAMLGIRYHMRLMGEAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVTK 394 (435)
Q Consensus 323 ~~~l~~~i~~~r~lLr~lg~~sgv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~~~~l~~ 394 (435)
+..++++|++.|..||+ .+++++|+++.|++.+.+.+|++|+|++|||+|||+++|+..+..+.+.+
T Consensus 322 ~~~~g~lm~~sh~Slrd-----~yevS~~eld~lv~~a~~~~Ga~GaR~tGgGfGGc~vaLv~~~~~~~~~~ 388 (423)
T PLN02865 322 LEEFGKLISASGLSSIE-----NYECGCEPLIQLYEILLKAPGVYGARFSGAGFRGCCVAFVDAEMAEEAAS 388 (423)
T ss_pred HHHHHHHHHHhhhhHHh-----hccCCcHHHHHHHHHHHhcCCCeEEEEeccCCccEEEEEEchhHHHHHHH
Confidence 34899999999999998 45689999999999999988999999999999999999998765444433
No 20
>PTZ00290 galactokinase; Provisional
Probab=99.87 E-value=1.3e-20 Score=197.23 Aligned_cols=257 Identities=12% Similarity=0.074 Sum_probs=156.7
Q ss_pred CCCcChhHHHHHHHHHHHHHHhcc----ccCCCc-----cccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCC-
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGI----VNLSSS-----IDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGS- 180 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~----~~l~~~-----~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg- 180 (435)
++||+||||++||++.||+..++. ..++.. ....+..+...+..+||.||...-|.+++++|+++++||.
T Consensus 146 GaGLSSSAAleva~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~aqraEn~~vGv~cGiMDQ~asa~g~~ 225 (468)
T PTZ00290 146 GAGMSASASFGVALLNAINTVVTRRYKGCPTSPGRRYSILPPMSKEELIELAKQARRIETEFCGVNVGIMDQFISAFAEE 225 (468)
T ss_pred CCCcchHHHHHHHHHHHHHHHhhhhccccccccccccccccccCcccHHHHHHHHHHHHHhhcCCCcchhhHHHHHhCCC
Confidence 999999999999999999997630 111000 0012234567888899999999999999999999999984
Q ss_pred --eeeeecChhhhhhhhhhhcCCchhhhhhhhccCCCccccccccC----CCCceEEEEecCCCCCCcHHHHHH---HHH
Q 013834 181 --QRYVRFSPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSL----PPLMTLLLGEPGTGGSSTPSMVGA---VKK 251 (435)
Q Consensus 181 --~~Y~rf~p~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~l----p~~~~Lllgdtg~~~s~T~~lV~~---V~~ 251 (435)
..|..|.+ .+++++++ |.++.|+|+||+. +++ ++.. -++
T Consensus 226 ~~al~iD~~~----------------------------l~~~~v~l~~~~~~~~~~vV~nS~v-~h~---l~~s~~~~Yn 273 (468)
T PTZ00290 226 DKFMFLDCKS----------------------------LTFESHDMTPLLGDGACFLLIDSMI-KHD---LLGGTAGMYN 273 (468)
T ss_pred CcEEEEecCC----------------------------CeEEEeccCCCCCCCcEEEEEeCCC-cch---hccccchhhH
Confidence 35555532 13334443 3589999999999 764 3221 333
Q ss_pred HhhhCchhHHHHHHHHhhhHH-HHHHHHHHH-------------HhHH----HH-hHHHHH----------HHHHHHhhh
Q 013834 252 WQKSDPQKSQETWKKLSESNS-ALETQLNML-------------SKLA----EE-HWNAYK----------QVIESCSKL 302 (435)
Q Consensus 252 wr~~~pe~a~~~~~~L~~~n~-~~~~~L~~l-------------~~l~----~~-~~~~y~----------~~i~al~~l 302 (435)
-|+..++.+.++ |+.... .+...|+++ .++. .. ++..|+ ++.++...|
T Consensus 274 ~Rr~ece~a~~~---L~~~~l~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ra~HVitEn~RV~~a~~al 350 (468)
T PTZ00290 274 TVRSDQEGAQKK---IGKHRYRGKPFTFSDLVRNPKKYTFDGDVVAFMESCKPLMTPGEFERGTYNIMEQIRTLEFIKLN 350 (468)
T ss_pred HHHHHHHHHHHH---hccccccchhhhHHHhhhccccccccccHHHHHHHhhhcCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344445444432 211000 000112222 0110 00 122222 222222222
Q ss_pred hhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEE
Q 013834 303 KSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFA 382 (435)
Q Consensus 303 ~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iia 382 (435)
...+ ... .+ ..+..++++|+++|..||. .+.+++|+++.|++.+.+..|++|||++|||+|||+++
T Consensus 351 ~~~~----~l~-~~----~~~~~lG~lm~~sh~sL~~-----~~~vS~~elD~lv~~~~~~~G~~GaRlTGaG~GGc~i~ 416 (468)
T PTZ00290 351 DPEL----PLS-RE----ERFRKAGEILNAGHQGMRD-----LMKITTPELDFIHELINEEKGVAGGRMMGGGFGGCIIL 416 (468)
T ss_pred Hhhh----hcc-cc----cHHHHHHHHHHHHHHHHHH-----hcCCCcHHHHHHHHHHHHhCCCcEEEEecCCCceEEEE
Confidence 1000 000 00 1255899999999998888 23579999999999876667999999999999999999
Q ss_pred EecCCCh----hHHHHHHHhC-Cce--EEeeeeCCCCcEEEe
Q 013834 383 VTLGDSG----SNVTKAWSSV-NVL--ALLVREDPHGVSLES 417 (435)
Q Consensus 383 L~~~~~~----~~l~~~w~~~-gv~--~L~~~~~~~Gv~~e~ 417 (435)
|+..+.. +.+.+.+.+. |+. .+.++ ...|+++..
T Consensus 417 Lv~~~~~~~~~~~v~~~y~~~~g~~~~~~~~~-~~~Ga~~~~ 457 (468)
T PTZ00290 417 LLKKNAVDRVVAHVREKFKARFGVENDVYPVV-AGDGAFVVS 457 (468)
T ss_pred EechhhHHHHHHHHHHHHHHhhCCCCcEEEEe-cCCCcEEEe
Confidence 9887653 4455566555 533 33444 356888764
No 21
>PRK03817 galactokinase; Provisional
Probab=99.86 E-value=4.8e-20 Score=187.65 Aligned_cols=212 Identities=16% Similarity=0.131 Sum_probs=137.0
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCC---eeeeecC
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGS---QRYVRFS 187 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg---~~Y~rf~ 187 (435)
+.|||||||+++|++.|+..+++ +++ +++++.++|+.++...+|..++.+|..+++||+ ..+..+.
T Consensus 98 ~~GLgSSaa~~va~~~al~~~~~-~~~----------~~~~l~~~a~~~E~~~~g~~~g~~D~~~~~~g~~~~~~~~~~~ 166 (351)
T PRK03817 98 GAGLSSSASLEVAVAYALNEAYN-LNL----------SKLELALLAREAENEFVGVPCGIMDQFAVAFGKKDHAIFLDTM 166 (351)
T ss_pred CCCcCcHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHhcccccCCCCcCchhhheeeccCCEEEEEecC
Confidence 79999999999999999999998 654 888999999999999999555559999999986 2222221
Q ss_pred hhhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcH--------HHHHHHHHHhhh-Cc-
Q 013834 188 PEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTP--------SMVGAVKKWQKS-DP- 257 (435)
Q Consensus 188 p~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~--------~lV~~V~~wr~~-~p- 257 (435)
+ ....++++|+.++|++++++. ..++. ..+.++.+-... .+
T Consensus 167 ~----------------------------~~~~~~~~~~~~~~vv~~sg~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (351)
T PRK03817 167 T----------------------------LEYEYVPFPEDYEILVFDTGV-KRELASSEYNERRQECEEALKILGKKSSK 217 (351)
T ss_pred C----------------------------CceEEEecCCCcEEEEEeCCC-ccccccchhHHHHHHHHHHHHHhCccchh
Confidence 1 122355667789999999997 65443 222232211000 00
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHH
Q 013834 258 QKSQETWKKLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHM 337 (435)
Q Consensus 258 e~a~~~~~~L~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lL 337 (435)
+... +.+....+.+ .+++.....+.. ....++.++.+ +| +..++++|+++|..|
T Consensus 218 ~~~~---~~~~~l~~~~---~~~~~~~v~e~~-r~~~~~~al~~--------~d-----------~~~lg~l~~~s~~~l 271 (351)
T PRK03817 218 EVTE---EDLSKLPPLL---RKRAGYVLRENE-RVLKVRDALKE--------GD-----------IETLGELLTESHWDL 271 (351)
T ss_pred cCCH---HHHHhCCHHH---HHHHHHHHHHHH-HHHHHHHHHHc--------CC-----------HHHHHHHHHHHHHHH
Confidence 0000 0111111111 111111111110 01123344433 33 348999999999999
Q ss_pred HhccccCCCCCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCChhHHHH
Q 013834 338 RLMGEAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVTK 394 (435)
Q Consensus 338 r~lg~~sgv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~~~~l~~ 394 (435)
++-- .+++|++++|++.+.+. |++|+|++|||+|||+++|+..+..+.+.+
T Consensus 272 ~~~~-----~~s~p~ld~l~~~a~~~-GalGaklsGaG~Gg~vlal~~~~~~~~~~~ 322 (351)
T PRK03817 272 ADNY-----EVSCEELDFFVEFALEL-GAYGARLTGAGFGGSAIALVDKGKFESIGE 322 (351)
T ss_pred Hhhc-----CCCcHHHHHHHHHHHHc-CCCEEEEecCCCCeEEEEEEchHHHHHHHH
Confidence 9732 35799999999999887 999999999999999999986654444433
No 22
>PRK01123 shikimate kinase; Provisional
Probab=99.66 E-value=4.8e-15 Score=146.80 Aligned_cols=194 Identities=19% Similarity=0.148 Sum_probs=128.6
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCC-CCCccchhheeeCCeeeeecCh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGK-IGSGFDVSSAVYGSQRYVRFSP 188 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk-~GSG~DvaaAvyGg~~Y~rf~p 188 (435)
.+.|||||||+++|++.|+..+++ .++ +++++.++|..++..+|+. .|++.|+++++|||+++.....
T Consensus 86 ~~~GLGSSaA~~va~~~a~~~~~~-~~l----------~~~el~~la~~~e~~~~~~~~g~~~d~~~~~~GG~~~~~~~~ 154 (282)
T PRK01123 86 LASGLKSSSAAANATVLATLDALG-EDL----------DDLDILRLGVKASRDAGVTVTGAFDDACASYFGGVTVTDNRE 154 (282)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHhhccccccccCchhHHHHHHhCCEEEEcCCC
Confidence 389999999999999999999998 665 8889999999998888874 4889999999999996664211
Q ss_pred hhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHh
Q 013834 189 EVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLS 268 (435)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~ 268 (435)
. . .+.++. +.+++++++++. ..+|... ..+. .++..+ ..++++
T Consensus 155 ~------------~---------------~~~~~~--~~~~~vv~~p~~-~~~T~~~-r~~~-l~~~~~-~~d~~~---- 197 (282)
T PRK01123 155 M------------K---------------LLKRDE--VELDVLVLIPPE-GAFSASA-DVER-MKLIAP-YVDMAF---- 197 (282)
T ss_pred c------------e---------------EEEEec--CCcEEEEEECCC-Ccchhhh-hhhh-chhcCc-HHHHHH----
Confidence 0 0 011222 237899999998 7777641 1110 001000 001100
Q ss_pred hhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHH--hccccCCC
Q 013834 269 ESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMR--LMGEAAGV 346 (435)
Q Consensus 269 ~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr--~lg~~sgv 346 (435)
+.+.. + .+.++|..++ ++. .++.
T Consensus 198 ----------------------------~~~~~--------~--------------~l~~~~~~~~-l~~~~~l~~---- 222 (282)
T PRK01123 198 ----------------------------ELALD--------G--------------EYFKAMTLNG-LLYSSALGF---- 222 (282)
T ss_pred ----------------------------HHHhh--------c--------------cHHHHHHhCC-chhhhhhCC----
Confidence 00000 0 2334555442 332 3332
Q ss_pred CCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCChhHHHHHHHhCCceEEeeeeCCCCcEEE
Q 013834 347 PIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVTKAWSSVNVLALLVREDPHGVSLE 416 (435)
Q Consensus 347 ~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~~~~l~~~w~~~gv~~L~~~~~~~Gv~~e 416 (435)
+ ++++..+++. |++|++++|+ |+|+++|+..+..+++.++|++. .+++.++.+..|++++
T Consensus 223 --~----~~~i~~a~~~-Ga~ga~lSGa--Gptv~al~~~~~~~~v~~~l~~~-~~~~~~~~~~~G~~v~ 282 (282)
T PRK01123 223 --P----TEPALEALEA-GAVGVGLSGT--GPSYVAIVDEEDPEEVKEAWEKY-GKVIVTKINNEGARIL 282 (282)
T ss_pred --C----hHHHHHHHHC-CCeEEEEecC--CCeEEEEeCCCCHHHHHHHHHhC-CEEEEeeecCCCceeC
Confidence 2 2445556654 8899999986 57999998765577888888887 7889999999998864
No 23
>PLN02451 homoserine kinase
Probab=99.66 E-value=1.2e-14 Score=149.00 Aligned_cols=211 Identities=20% Similarity=0.231 Sum_probs=142.9
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhh-eeeCCee-eeecC
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSS-AVYGSQR-YVRFS 187 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~Dvaa-AvyGg~~-Y~rf~ 187 (435)
.+.|||||||.++|++.|+..+++ .++ +++++.++|..++..++|. ..|.++ ++|||.+ ++..+
T Consensus 145 ~g~GLGSSaA~avA~l~aln~l~g-~~l----------s~~eL~~la~~~E~~v~g~---h~Dnva~a~~GG~v~~~~~~ 210 (370)
T PLN02451 145 LGSGLGSSAASAAAAAVAVNELFG-SPL----------GKDDLVLAGLESEAKVSGY---HADNIAPALMGGFVLIRSYE 210 (370)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHHhchhcCC---CccchhHhhcCCEEEEEecC
Confidence 389999999999999999999998 665 8899999999998877762 357654 7999994 43322
Q ss_pred hhhhhhhhhhhcCCchhhhhhhhccCCCccccccccCC--CCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHH
Q 013834 188 PEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLP--PLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWK 265 (435)
Q Consensus 188 p~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp--~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~ 265 (435)
+. ++.++++| +++++++...+. ..+|+.+.+.+.+-. + ..+.++.
T Consensus 211 ~~----------------------------~~~~~~~p~~~~~~~Vlv~P~~-~~sT~~ar~~lp~~~---~-~~~~v~~ 257 (370)
T PLN02451 211 PL----------------------------HLIPLRFPSAKDLFFVLVSPDF-EAPTKKMRAALPKEI---P-MKHHVWN 257 (370)
T ss_pred CC----------------------------eEEEeecCCCCCeEEEEEcCCC-CccHHHHHHHHhhhc---c-hhhHHHH
Confidence 21 12233333 578999999998 999999987553211 1 1111110
Q ss_pred HHhhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCC
Q 013834 266 KLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAG 345 (435)
Q Consensus 266 ~L~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sg 345 (435)
+. ++ ..++.++.+ +| +..++++|...+.+....+.
T Consensus 258 -~~-----------~~-----------~~l~~al~~--------~d-----------~~~l~~~m~nD~~~e~~r~~--- 292 (370)
T PLN02451 258 -CS-----------QA-----------AALVAAILQ--------GD-----------AVLLGEALSSDKIVEPTRAP--- 292 (370)
T ss_pred -HH-----------HH-----------HHHHHHHHc--------CC-----------HHHHHHHHHHHHHhHHHHhh---
Confidence 00 00 112233332 22 22677778766555555544
Q ss_pred CCCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC-hhHH----HHHHHhC---CceEEeeeeCCCCcEEEe
Q 013834 346 VPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS-GSNV----TKAWSSV---NVLALLVREDPHGVSLES 417 (435)
Q Consensus 346 v~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~~l----~~~w~~~---gv~~L~~~~~~~Gv~~e~ 417 (435)
..|.++++++.+.+. |++|+++||+|. ++|+|+.+++ .+++ .+.|.+. +...+.++.+.+|++++.
T Consensus 293 ---~~P~l~~l~~~~~~~-GA~ga~mSGSGp--tvfal~~~~~~a~~i~~~l~~~~~~~~~~~~~~~~~~~d~~Ga~v~~ 366 (370)
T PLN02451 293 ---LIPGMEAVKKAALEA-GAYGCTISGAGP--TAVAVIDDEEKGEEVGERMVEAFRKAGNLKATASVKKLDRVGARLVE 366 (370)
T ss_pred ---hCccHHHHHHHHHHC-CCeEEEEEccch--heEEEEcCHHHHHHHHHHHHHHHHHhcCCCceEEEeccCCCCeEEEe
Confidence 578999999999876 889999999999 6899986543 3444 4455443 467888888899999875
Q ss_pred c
Q 013834 418 C 418 (435)
Q Consensus 418 ~ 418 (435)
.
T Consensus 367 ~ 367 (370)
T PLN02451 367 S 367 (370)
T ss_pred c
Confidence 4
No 24
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.65 E-value=1.1e-14 Score=142.82 Aligned_cols=179 Identities=19% Similarity=0.109 Sum_probs=118.9
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcC-CCCCccchhheeeCCeeeeecCh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQG-KIGSGFDVSSAVYGSQRYVRFSP 188 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQG-k~GSG~DvaaAvyGg~~Y~rf~p 188 (435)
.+.|||||+|+++|++.|+..+++ .++ +++++.++|+.++..+++ ..|++.|+++++|||+.|.+..+
T Consensus 75 ~~~GLGSSaA~~~a~~~al~~~~~-~~l----------~~~~l~~la~~~e~~~~~~~~~~~~D~~~~~~gG~~~~~~~~ 143 (261)
T TIGR01920 75 AGSGLKSSSALVNALVEAVLKAKG-VEI----------DDIDILRLGARLSKDAGLSVTGAFDDAAASYLGGIVITDNRR 143 (261)
T ss_pred CCCCcchHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHhCCEEEEeCCC
Confidence 389999999999999999999998 665 889999999999988884 26899999999999997765322
Q ss_pred hhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHh
Q 013834 189 EVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLS 268 (435)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~ 268 (435)
.. ..++..+| .+.+++...+. ..+|+.....++. .+.
T Consensus 144 ~~---------------------------~~~~~~~~-~~~~vv~~p~~-~~tt~~~~~~~l~--------------~~~ 180 (261)
T TIGR01920 144 MK---------------------------ILKRDKLE-GCTAAVLVPKE-GERRENVDLNRFR--------------RIS 180 (261)
T ss_pred ce---------------------------EEEecCCC-CceEEEEECCC-CcccccccHHHhh--------------hcc
Confidence 10 01122223 35677777766 6655532222221 110
Q ss_pred hhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHH-HhccccCCCC
Q 013834 269 ESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHM-RLMGEAAGVP 347 (435)
Q Consensus 269 ~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lL-r~lg~~sgv~ 347 (435)
... ..+.+.+.. + .+.++|..|+.++ +.++.
T Consensus 181 ~~~---------------------~~~~~~~~~--------~--------------~l~~am~~n~~l~~~~lg~----- 212 (261)
T TIGR01920 181 PVV---------------------EEAFNLALR--------G--------------EYLKAMVLNGVAYATALGY----- 212 (261)
T ss_pred hHH---------------------HHHHHHHhh--------C--------------CHHHHHhhChHHhHHhhCC-----
Confidence 000 011111111 1 3457888888776 55553
Q ss_pred CCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCChhHHHHHHHhCC
Q 013834 348 IEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVTKAWSSVN 400 (435)
Q Consensus 348 Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~~~~l~~~w~~~g 400 (435)
+++ ++..+++. |++|+|+||| |+|+++|+.+. +++.+.|++.+
T Consensus 213 -~~~----~i~~a~~~-Galga~lSGa--G~sv~aL~~~~--~~v~~~~~~~~ 255 (261)
T TIGR01920 213 -PLE----PASKALEA-GAAAAGLSGK--GPSYFALTEDP--EEAAEALMEFG 255 (261)
T ss_pred -ChH----HHHHHHHc-CCcEEeecCC--CCeEEEEeCCH--HHHHHHHHhCC
Confidence 333 55666666 8899999996 77999997644 67888998865
No 25
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.51 E-value=4e-13 Score=133.03 Aligned_cols=178 Identities=19% Similarity=0.238 Sum_probs=117.2
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPE 189 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~ 189 (435)
.+.|||||+|.++|++.|+..+++ .++ +++++.++|... |.|++++.|||.++......
T Consensus 95 ~~~GLGSSsa~a~a~~~al~~~~~-~~l----------~~~~l~~~a~~~----------g~dv~~~~~Gg~~~~~~~g~ 153 (286)
T PRK00128 95 VAAGLAGGSSDAAATLRGLNKLWN-LGL----------SLEELAEIGLEI----------GSDVPFCIYGGTALATGRGE 153 (286)
T ss_pred ccccchHHHHHHHHHHHHHHHHhc-CCc----------CHHHHHHHHHHh----------CCCCCeEeeCCeEEEecCCc
Confidence 389999999999999999999998 665 777777776444 23999999999855433221
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHhh
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLSE 269 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~~ 269 (435)
.+++++.++.+.+++.+++. ..+|..+++.+..-+...+ .
T Consensus 154 ----------------------------~~~~~~~~~~~~~vv~~p~~-~~~T~~~~~~~~~~~~~~~-~---------- 193 (286)
T PRK00128 154 ----------------------------KITPLKSPPSCWVVLAKPDI-GVSTKDVYKNLDLDKISHP-D---------- 193 (286)
T ss_pred ----------------------------ccccCCCCCCcEEEEEcCCC-CCCHHHHHhcCccccccCc-c----------
Confidence 12234445568899999999 9999988865421000011 0
Q ss_pred hHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCCC
Q 013834 270 SNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIE 349 (435)
Q Consensus 270 ~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~Ie 349 (435)
+ ..++.++.. +| +..++.+|. ..|..... . .
T Consensus 194 ----~------------------~~~~~~l~~--------~d-----------~~~~~~~~~---n~l~~~~~----~-~ 224 (286)
T PRK00128 194 ----T------------------EKLIEAIEE--------GD-----------YQGICANMG---NVLENVTL----K-K 224 (286)
T ss_pred ----h------------------HHHHHHHhc--------CC-----------HHHHHHhcc---CcHHHHHH----h-h
Confidence 0 011222221 22 124555443 12333221 1 2
Q ss_pred CHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC-hhHHHHHHHhCC
Q 013834 350 PESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS-GSNVTKAWSSVN 400 (435)
Q Consensus 350 pp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~~l~~~w~~~g 400 (435)
.|+++++++.+++. |++|++++|+| .|+++|+.+++ .+++.++|++..
T Consensus 225 ~p~l~~l~~~~~~~-Ga~g~~lSGsG--~sv~~l~~~~~~~~~i~~~l~~~~ 273 (286)
T PRK00128 225 YPEIAKIKERMLKF-GADGALMSGSG--PTVFGLFDDESRAQRIYNGLKGFC 273 (286)
T ss_pred ChHHHHHHHHHHhc-CCCeeEEcccC--ccEEEEeCCHHHHHHHHHHhHhhc
Confidence 68899999999887 78999999999 67999986643 567777777653
No 26
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.51 E-value=4.1e-13 Score=134.24 Aligned_cols=203 Identities=18% Similarity=0.195 Sum_probs=124.7
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccc-hhheeeCCeeeeecCh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFD-VSSAVYGSQRYVRFSP 188 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~D-vaaAvyGg~~Y~rf~p 188 (435)
.+.|||||||.++|++.|+..+++ .++ +++++.++|...+. + .| ++++.|||..+.....
T Consensus 91 ~~~GLGSSsa~~vA~l~a~~~l~~-~~l----------~~~el~~~a~~~E~-------h-~Dnv~~~l~GG~~~~~~~~ 151 (302)
T TIGR00191 91 LGRGLGSSAAAIVAALAAANELCG-LPL----------SKERLLDYASELEG-------H-PDNVAPALLGGFQLAFVED 151 (302)
T ss_pred CcCCCChHHHHHHHHHHHHHHHcC-CCc----------CHHHHHHHHHHhcC-------C-cccHHHHhccCEEEEEEcC
Confidence 389999999999999999999998 665 77788887776642 2 45 8899999984332111
Q ss_pred hhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHh
Q 013834 189 EVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLS 268 (435)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~ 268 (435)
..+ ...++..++.+++++.+++. ..+|+.+.+.+.+ ..+ ..+. +.
T Consensus 152 ~~~--------------------------~~~~~~~~~~~~~vl~~p~~-~~sT~~a~~~lp~---~~~-~~~~----v~ 196 (302)
T TIGR00191 152 DKL--------------------------EVLKIPIFSKLDWVLAIPNI-EVSTAEARAVLPK---AYP-RQDL----VF 196 (302)
T ss_pred Cce--------------------------EEEEeCCCCCEEEEEEECCC-cccHHHHHHhCcc---cCC-HHHH----HH
Confidence 000 11122333678999999998 9999988754321 111 1111 11
Q ss_pred hhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHH--HHHHHhccccCCC
Q 013834 269 ESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGI--RYHMRLMGEAAGV 346 (435)
Q Consensus 269 ~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~--r~lLr~lg~~sgv 346 (435)
.+.++. .++.++.+ ++ ..+.+.+..+ |+..|..
T Consensus 197 --------~~~~~~-----------~l~~al~~--------~~------------~~l~~~~~~d~l~e~~~~~------ 231 (302)
T TIGR00191 197 --------NLSHLA-----------GLVHAIYQ--------KK------------PDLGAIMMKDRIHQPYRES------ 231 (302)
T ss_pred --------HHHHHH-----------HHHHHHHc--------CC------------HHHHHHHcccccchhhHhh------
Confidence 011111 11223322 10 0333343333 2333432
Q ss_pred CCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC-hh---HHHHHHHhC--CceEEeeeeCCCCcEEE
Q 013834 347 PIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS-GS---NVTKAWSSV--NVLALLVREDPHGVSLE 416 (435)
Q Consensus 347 ~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~---~l~~~w~~~--gv~~L~~~~~~~Gv~~e 416 (435)
..|.++++++.+.+. |++|++++||| .|+++|+.++. .+ .+.+.|.+. ..+.+.++.+.+|+++|
T Consensus 232 --l~p~l~~i~~~~~~~-Ga~g~~lSGsG--ptv~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~~ 302 (302)
T TIGR00191 232 --LIPNLFKIKQAALEK-GAYGITISGSG--PTILAMADEEFAEQKEQDLLEVLHKQGIEGTVHVLDFDNDGARVE 302 (302)
T ss_pred --hCCCHHHHHHHHHHC-CCeEEEEEchh--hhheEEecchhhHHHHHHHHHHHHhcCCCeEEEEcccCCCCeEeC
Confidence 257889999988877 88999999999 56999986554 22 233344433 35677777888898875
No 27
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.50 E-value=1.4e-12 Score=130.84 Aligned_cols=208 Identities=17% Similarity=0.160 Sum_probs=127.5
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPE 189 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~ 189 (435)
.+.|||||||..+|++.|+..+++ .++ +++++.++|... | .|++.+.|||..+..-...
T Consensus 97 ~~~GLGSssa~~~A~~~al~~~~~-~~l----------~~~~l~~~a~~~--------g--~dv~~~~~GG~~~~~~~g~ 155 (312)
T PRK02534 97 IGAGLAGGSTDAAAVLVGLNLLWG-LGL----------TQPELESLAAEL--------G--SDVPFCIAGGTQLCFGRGE 155 (312)
T ss_pred CcCCccHHHHHHHHHHHHHHHHhC-CCc----------CHHHHHHHHHHh--------C--CCCcEEeECCeEEEECCCC
Confidence 389999999999999999999998 655 777777775433 2 3999999999844321111
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEE-ecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHh
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLG-EPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLS 268 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllg-dtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~ 268 (435)
.++++.+|+++.+++. +.+. ..+|+++.+.+.+-...........++.+.
T Consensus 156 ----------------------------~~~~~~~~~~~~~vv~~~p~~-~~~T~~a~~~~~~~~~~~~~~~~~~~~~~~ 206 (312)
T PRK02534 156 ----------------------------ILEPLPDLDGLGVVLAKYPSL-SVSTPWAYKTYRQQFGDTYLSDEEDFEQRR 206 (312)
T ss_pred ----------------------------EeEECCCCCCcEEEEEECCCC-CccHHHHHHHHhhhcccccccCcccccccc
Confidence 1345566678899987 7998 899998886543221111100000001111
Q ss_pred hhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCC
Q 013834 269 ESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPI 348 (435)
Q Consensus 269 ~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~I 348 (435)
... +. ..++.++.. +|.+ .+++.| |+-+|.... |
T Consensus 207 ~~~--------~~-----------~~l~~al~~--------~d~~-----------~~~~~~---~n~l~~~~~----~- 240 (312)
T PRK02534 207 QAL--------RS-----------GPLLQAISA--------KDPP-----------PIAQLL---HNDLEKVVL----P- 240 (312)
T ss_pred ccc--------ch-----------hHHHHhhhc--------cCHH-----------HHHHhh---hCchHHHhH----h-
Confidence 000 00 012233322 2211 344433 334444332 2
Q ss_pred CCHHHHHHHHHHH-hcCCceeeeecCCCccceeEEEecCCC-hhHHHHHHHh----CCceEEeeeeCCCCcEEE
Q 013834 349 EPESQTQLLNATM-DMEGVLLAGVPGAGGFDAVFAVTLGDS-GSNVTKAWSS----VNVLALLVREDPHGVSLE 416 (435)
Q Consensus 349 epp~lt~Lld~a~-~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~~l~~~w~~----~gv~~L~~~~~~~Gv~~e 416 (435)
..|++.++++.++ +. |++|+++||+| -++++|+.+.. .+.+.+++.+ .++..+.++.+..|+++|
T Consensus 241 ~~~~i~~~~~~l~~~~-Ga~~~~lSGsG--ptv~~l~~~~~~a~~~~~~l~~~~~~~~~~v~i~~~~n~G~~v~ 311 (312)
T PRK02534 241 EYPQVAKLLELLSSLP-GCLGTMMSGSG--PTCFALFESQEQAEQALEQVREAFADPGLDAWVCQFISHGIQLE 311 (312)
T ss_pred cChHHHHHHHHHHhcc-CCCeeEEECcC--cceEEEeCCHHHHHHHHHHHHHHhccCceEEEEEEecCCCceec
Confidence 4788889888776 55 88999999999 57999986543 4556555543 345677777888899886
No 28
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.46 E-value=2.6e-12 Score=128.16 Aligned_cols=200 Identities=18% Similarity=0.142 Sum_probs=124.0
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPE 189 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~ 189 (435)
.+.|||||||.++|++.|+..+++ .++ +++++.++|... | .|++++.|||.++.+....
T Consensus 94 ~~~GLGSSSA~a~A~l~al~~~~g-~~l----------s~~el~~~a~~i--------g--~dv~~~~~GG~~~~~~~g~ 152 (300)
T PRK03188 94 VAGGMAGGSADAAAALVACDALWG-LGL----------SRDELLELAAEL--------G--SDVPFALLGGTALGTGRGE 152 (300)
T ss_pred ccCcchHHHHHHHHHHHHHHHHhC-CCc----------CHHHHHHHHHHh--------C--CCcchhhcCCeEEEEecCC
Confidence 389999999999999999999998 665 777777776442 2 4999999999955532211
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHhh
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLSE 269 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~~ 269 (435)
.++++..++.+.+++.-.+. +.+|+.+++.+...+...+... ...
T Consensus 153 ----------------------------~~~~~~~~~~~~~~lv~p~~-~~sT~~~~~~l~~~~~~~~~~~------~~~ 197 (300)
T PRK03188 153 ----------------------------QLAPVLARGTFHWVLAFADG-GLSTPAVFRELDRLREAGDPPR------LGE 197 (300)
T ss_pred ----------------------------EEEECCCCCCcEEEEEeCCC-CCCHHHHHHhchhhhccccccc------ccc
Confidence 11233333345666655676 7789988876653221100000 000
Q ss_pred hHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCCC
Q 013834 270 SNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIE 349 (435)
Q Consensus 270 ~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~Ie 349 (435)
...++.++.. +| +..+++.|....+. ..++ .
T Consensus 198 ----------------------~~~~~~al~~--------~d-----------~~~l~~~~~n~le~-~~~~-------~ 228 (300)
T PRK03188 198 ----------------------PDPLLAALRA--------GD-----------PAQLAPLLGNDLQA-AALS-------L 228 (300)
T ss_pred ----------------------HHHHHHHHHc--------CC-----------HHHHHHHhhCcCHH-HHHH-------h
Confidence 0112333332 22 22566665321111 1111 3
Q ss_pred CHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC-hhHHHHHHHhCCceEE--eeeeCCCCcEEEe
Q 013834 350 PESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS-GSNVTKAWSSVNVLAL--LVREDPHGVSLES 417 (435)
Q Consensus 350 pp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~~l~~~w~~~gv~~L--~~~~~~~Gv~~e~ 417 (435)
.|++++|++.+++. |++|+++||+|.. +++|+.+++ .+++.+.|++.|.... ..+....|.++.+
T Consensus 229 ~p~l~~l~~~~~~~-Galga~lSGsG~t--v~~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 296 (300)
T PRK03188 229 RPSLRRTLRAGEEA-GALAGIVSGSGPT--CAFLCADADSAVDVAAALSGAGVCRTVRVATGPVPGARVVS 296 (300)
T ss_pred CchHHHHHHHHHHC-CCCEEEEEccccc--eEEEeCCHHHHHHHHHHHHhcCcceeEEEeeccccceEecc
Confidence 89999999999887 7899999999986 677765533 5678888988764322 2233456777654
No 29
>PRK01212 homoserine kinase; Provisional
Probab=99.43 E-value=7.8e-12 Score=124.67 Aligned_cols=201 Identities=20% Similarity=0.195 Sum_probs=125.7
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeee-cChh
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVR-FSPE 189 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~r-f~p~ 189 (435)
+.|||||+|..+|++.||..+++ .++ +.+++.++|...+ +++-|++.+.|||..+.+ ..+.
T Consensus 93 ~~GLGssSa~aaA~l~al~~l~~-~~l----------~~~eL~~~a~~~e-------~~~ddv~~~l~GG~~~~~~g~g~ 154 (301)
T PRK01212 93 GRGLGSSAASIVAGLVAANELAG-LPL----------SKEELLQLATEGE-------GHPDNVAPALLGGLVLALEENGV 154 (301)
T ss_pred CCCCcHHHHHHHHHHHHHHHHcC-CCC----------CHHHHHHHHHHhc-------CCHHHHHHHHhCCEEEEEECCce
Confidence 89999999999999999999998 665 7776766665442 256689999999984332 2111
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHhh
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLSE 269 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~~ 269 (435)
.+++++.|+.+++++..++. +.+|+.+.+.+ .+..+ . ......+..
T Consensus 155 ----------------------------~~~~~~~~~~~~~vlv~p~~-~~sT~~a~~~l---~~~~~-~-~~~~~~~~~ 200 (301)
T PRK01212 155 ----------------------------ISVKIPVFDDLKWVVAIPNI-ELSTAEARAVL---PKQYS-L-KDAVFNSSR 200 (301)
T ss_pred ----------------------------EEEEecCCCCeEEEEEECCC-cCCHHHHHHhC---cCcCC-H-HHHHHHHHH
Confidence 23455556678899999998 89999876432 11111 0 111111111
Q ss_pred hHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHH-HHHHHHHhccccCCCCC
Q 013834 270 SNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAML-GIRYHMRLMGEAAGVPI 348 (435)
Q Consensus 270 ~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~-~~r~lLr~lg~~sgv~I 348 (435)
. ..++.++.. +| +..+++.|+ ..++..|. .
T Consensus 201 ~----------------------~~l~~al~~--------~d-----------~~~~~~~~~~~~~~~~~~-------~- 231 (301)
T PRK01212 201 A----------------------ALLVAALYT--------GD-----------YELAGRAMKDVLHEPYRA-------K- 231 (301)
T ss_pred H----------------------HHHHHHHhh--------CC-----------HHHHHHHhchhheHHhHH-------h-
Confidence 1 112233322 22 124556552 22333322 1
Q ss_pred CCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCChhHHHHHHHhC-----CceEEeeeeCCCCcEE
Q 013834 349 EPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVTKAWSSV-----NVLALLVREDPHGVSL 415 (435)
Q Consensus 349 epp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~~~~l~~~w~~~-----gv~~L~~~~~~~Gv~~ 415 (435)
..|++.++++.+++. |++|++++|+| .|+++|+.++..+++.+.+++. +.....++.+..|+++
T Consensus 232 ~~p~~~~i~~~~~~~-Ga~g~~~SGsG--ptv~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~G~~~ 300 (301)
T PRK01212 232 LIPGFAEVRQAALEA-GALGAGISGAG--PTVFALCDKEDAEKVADALQKAFLQGIEGFVHVLRLDTAGARV 300 (301)
T ss_pred hCCCHHHHHHHHHHC-CCeEEEEEchh--hheeEEeccccHHHHHHHHHHhhccCCCeEEEEeccCCCceEe
Confidence 247799999988876 88999999998 5799997655444555555442 3556777777888875
No 30
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.40 E-value=6.7e-12 Score=125.11 Aligned_cols=174 Identities=22% Similarity=0.259 Sum_probs=110.0
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPE 189 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~ 189 (435)
.+.|||||||..++++.|+..+++ +++ +++++.++|... |.|++.++||+..+.+-..+
T Consensus 97 ~~aGLGsssa~aaa~l~al~~~~~-~~l----------~~~~l~~la~~l----------g~Dv~~~~~gg~~~~~g~ge 155 (293)
T TIGR00154 97 MGAGLGGGSSDAATVLVGLNQLWQ-LGL----------SLEELAELGLTL----------GADVPFFVSGHAAFATGVGE 155 (293)
T ss_pred CCCCcchhHHHHHHHHHHHHHHhC-CCc----------CHHHHHHHHHHh----------CCCcceEEECCeEEEEecCc
Confidence 389999999999999999999998 665 777777776433 34999999999843321111
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHhh
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLSE 269 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~~ 269 (435)
.+++++.|+.+.+++++.+. +.+|+.+++.+. ..+.++.....+...+..
T Consensus 156 ----------------------------~~~~l~~~~~~~~vl~~p~~-~~sT~~~~~~l~-~~~~~~~~~~~l~~~~~~ 205 (293)
T TIGR00154 156 ----------------------------IITPFEDPPEKWVVIAKPHV-SISTPVVYQAYK-LPRNTPKRAKEWLKKISL 205 (293)
T ss_pred ----------------------------EEEECCCCCCcEEEEEcCCC-CcChHHHHHhhh-hcccCcchhHHHHHHHhh
Confidence 12344445568899999999 999999997653 111122111111111110
Q ss_pred hHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCCC
Q 013834 270 SNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIE 349 (435)
Q Consensus 270 ~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~Ie 349 (435)
. . .+ .+ ....+.-++.... -.
T Consensus 206 ~--------------------~----~~---------------------------~~---~~~~~ndle~~~~-----~~ 226 (293)
T TIGR00154 206 E--------------------C----LQ---------------------------LL---DSNGLNDLEKVAL-----KR 226 (293)
T ss_pred c--------------------c----HH---------------------------HH---hhhhcCccHHHHH-----hc
Confidence 0 0 00 00 0111222333221 14
Q ss_pred CHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC-hhHHHHHH
Q 013834 350 PESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS-GSNVTKAW 396 (435)
Q Consensus 350 pp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~~l~~~w 396 (435)
.|++.++++.+++. |++++++||+| .|+|+|+.++. .+++.+.+
T Consensus 227 ~p~l~~i~~~l~~~-Ga~~a~mSGSG--~tvf~l~~~~~~a~~~~~~~ 271 (293)
T TIGR00154 227 HTEVAQALNWLLEY-GLAPERLSGSG--ACVFALFDMESEAEQVLEQA 271 (293)
T ss_pred CHHHHHHHHHHHhC-CCCeEEEeccc--cceEEEeCCHHHHHHHHHHh
Confidence 78999999999887 88999999995 68999987654 45555533
No 31
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.39 E-value=4.9e-12 Score=125.28 Aligned_cols=172 Identities=16% Similarity=0.210 Sum_probs=110.5
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPE 189 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~ 189 (435)
.+.|||||+|.++|++.|+..+++ .++ +++.+.++|.. .| .|++.+.||+..+.+...+
T Consensus 96 ~~~GLGsssa~~~a~~~al~~~~~-~~l----------~~~~l~~~a~~--------~G--~Dv~~~l~gg~~~~~g~ge 154 (280)
T PRK14614 96 VAAGLGGGSSDAATVLMGVNELLG-LGL----------SDERLMEIGVK--------LG--ADVPFFIFKKTALAEGIGD 154 (280)
T ss_pred CcCccHHHHHHHHHHHHHHHHHhC-CCc----------CHHHHHHHHHH--------hC--CCcceeeeCCcEEEEEcCc
Confidence 489999999999999999999998 555 78888887642 23 3999999999865542221
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHhh
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLSE 269 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~~ 269 (435)
.++++..++.+.+++++++. +.+|+.+++.+..-+...++.....++
T Consensus 155 ----------------------------~~~~l~~~~~~~ivl~~p~~-~~sT~~~~~~~~~~~~~~~~~~~~~~~---- 201 (280)
T PRK14614 155 ----------------------------KLTAVEGVPPLWVVLVNPGL-HVSTAWVYQNLRLTSRKDLAIIPRFFG---- 201 (280)
T ss_pred ----------------------------eeEECCCCCCcEEEEECCCC-CCCHHHHHhcccccccCcchhhhhhhh----
Confidence 12344444568899999999 999999998775311111100000000
Q ss_pred hHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCCC
Q 013834 270 SNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIE 349 (435)
Q Consensus 270 ~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~Ie 349 (435)
. +..+..+.. +|.+ .++ +. .
T Consensus 202 ----------~---------------~~~~~~~~~-----ndle-----------~~~------------~~-------~ 221 (280)
T PRK14614 202 ----------S---------------VAEVCALLS-----NDLE-----------SVT------------IG-------R 221 (280)
T ss_pred ----------h---------------HHHHhhhcc-----cCcH-----------HHH------------Hh-------c
Confidence 0 000000000 1211 111 11 2
Q ss_pred CHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC-hhHHHHHHHh
Q 013834 350 PESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS-GSNVTKAWSS 398 (435)
Q Consensus 350 pp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~~l~~~w~~ 398 (435)
.|+++++++.+++. |++|+++|||| +|+++|+.++. .+.+.+..++
T Consensus 222 ~p~l~~i~~~~~~~-Galga~lSGSG--~tv~~l~~~~~~~~~~~~~l~~ 268 (280)
T PRK14614 222 FPVIGEIKEELLAA-GARGSLMSGSG--STVFGLFDDEAAARAAAEELSR 268 (280)
T ss_pred ChHHHHHHHHHHhC-CCCEEEEeccc--cceEEEeCCHHHHHHHHHHhhh
Confidence 69999999999887 78999999997 78999987654 4555554433
No 32
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.20 E-value=3.3e-10 Score=112.81 Aligned_cols=90 Identities=26% Similarity=0.322 Sum_probs=69.0
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPE 189 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~ 189 (435)
.+.|||||+|..+|++.++..+++ .++ +++++.++|... |.|++.+.||+..+.+-..+
T Consensus 101 ~~~GLGsssa~aaa~l~~l~~l~~-~~l----------s~~el~~la~~i----------g~dv~~~l~gg~~~~~g~g~ 159 (290)
T PRK14608 101 VAAGIGGGSADAAAALRLLARLWG-LAL----------DDERLAALALSL----------GADVPVCLDSRPLIMRGIGE 159 (290)
T ss_pred CcCCchHHHHHHHHHHHHHHHHhC-CCc----------CHHHHHHHHHHh----------CCCcchhhcCCeEEEEecCC
Confidence 489999999999999999999998 665 888888887643 35999999999844432221
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHH
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAV 249 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V 249 (435)
++++++.++.+++++++.+. +.+|+.+.+.+
T Consensus 160 ----------------------------~~~~l~~~~~~~~vv~~p~~-~~sT~~~~~~l 190 (290)
T PRK14608 160 ----------------------------ELTPLPGLPSLPAVLVNPGV-PVATPDVFRAL 190 (290)
T ss_pred ----------------------------EeEECCCCCCcEEEEECCCC-CcChHHHHHhh
Confidence 12344433568899999999 99999888754
No 33
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=99.14 E-value=5.6e-11 Score=92.52 Aligned_cols=58 Identities=38% Similarity=0.537 Sum_probs=52.6
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCC
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGS 180 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg 180 (435)
.+.|||||||++++++.|+..+++ .++ +++++.++|+.+|+.+ | .+||+|+++++|||
T Consensus 10 ~~~GLgSSaa~~~a~~~a~~~~~~-~~~----------~~~~l~~~a~~~e~~~-g-~~~g~d~~~~~~GG 67 (67)
T PF00288_consen 10 PGSGLGSSAALAVALAAALNKLFG-LPL----------SKEELAKLAQEAERYI-G-KPSGIDDAASAYGG 67 (67)
T ss_dssp TTSSSSHHHHHHHHHHHHHHHHTT-TSS----------BHHHHHHHHHHHHHHC-S-SSHSHHHHHHHHCS
T ss_pred CCCcccHHHHHHHHHHHHHHHHcc-ccc----------cHHHHHHHHHHHHHHc-C-CCChhhHHHHHhCc
Confidence 489999999999999999999998 565 8889999999999666 7 67999999999997
No 34
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.13 E-value=1.9e-09 Score=106.60 Aligned_cols=92 Identities=23% Similarity=0.206 Sum_probs=68.9
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPE 189 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~ 189 (435)
.+.|||||||.++|++.|+..+++ +++ +.+++.++|... + .|+..++|||.++.+-...
T Consensus 91 ~~~GLGSSsA~aaA~l~al~~~~~-~~l----------~~~~l~~la~~i--------~--~D~~~~~~Gg~~~~~~~g~ 149 (275)
T PRK14611 91 VGAGLGGGSSNAAVVLKYLNELLG-NPL----------SEEELFELASSI--------S--ADAPFFLKGGFALGRGIGD 149 (275)
T ss_pred CcCCccHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHh--------C--CCCCeeecCCeEEEeccCc
Confidence 389999999999999999999998 665 777787777643 2 2888889999955432211
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHH
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKK 251 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~ 251 (435)
.+++++.++...+++.+++. +.+|+.+++.+.+
T Consensus 150 ----------------------------~~~~~~~~~~~~~vv~~p~~-~~sT~~~~~~l~~ 182 (275)
T PRK14611 150 ----------------------------KLEFLEKPISREITLVYPNI-KSSTGRVYSKVTK 182 (275)
T ss_pred ----------------------------eeEECCcCCCcEEEEEeCCC-CCChHHHHHhcch
Confidence 12233333346799999999 9999999987654
No 35
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.12 E-value=1.7e-09 Score=107.56 Aligned_cols=90 Identities=19% Similarity=0.125 Sum_probs=64.9
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheee-CCeeeeecCh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVY-GSQRYVRFSP 188 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvy-Gg~~Y~rf~p 188 (435)
.+.|||||+|.++|++.|+..+++ .++ +.+++.++|... |.|+.+..+ |+..+.....
T Consensus 94 ~~~GLGssSA~aaA~l~al~~l~g-~~l----------s~~el~~~a~~i----------g~Dvp~~l~~gg~~~~~g~g 152 (287)
T PRK14616 94 FGAGLGGGSSDAATVLRVLNELWE-INA----------PSADLHRLAVKL----------GADVPYFLEMKGLAYATGIG 152 (287)
T ss_pred CcCCchHHHHHHHHHHHHHHHHhC-CCc----------CHHHHHHHHHHh----------CCCcceEeccCCcEEEEEcC
Confidence 488999999999999999999998 665 777777766442 349777764 7765543221
Q ss_pred hhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHH
Q 013834 189 EVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAV 249 (435)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V 249 (435)
. .++++.++..+++++.+.+. +-+|..+.+.+
T Consensus 153 ~----------------------------~~~~~~~~~~~~~vvv~P~~-~vsT~~a~~~l 184 (287)
T PRK14616 153 D----------------------------ELEDLQLTLPFHIVTVFPEE-HISTVWAYKNF 184 (287)
T ss_pred c----------------------------eeEECCcCCCcEEEEECCCC-CcCHHHHHHHh
Confidence 1 12233333347899999999 99999888654
No 36
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.10 E-value=1.6e-09 Score=106.98 Aligned_cols=170 Identities=17% Similarity=0.208 Sum_probs=105.5
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPE 189 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~ 189 (435)
.+.|||||||..+|++.++..+++ .++ + +.++|.. .| .|++.+.|||..+-+-..+
T Consensus 94 ~~~GLGssSa~aaa~l~al~~l~~-~~l----------~---l~~ia~~--------~g--~dv~~~~~GG~~~~~g~g~ 149 (276)
T PRK14612 94 LAAGLGGGSSDAAATLLALAQLYP-APV----------D---LPALALT--------LG--ADVPFFLLGGAAEARGVGE 149 (276)
T ss_pred CcCCCchHHHHHHHHHHHHHHHhC-CCh----------H---HHHHHHH--------hC--CCcCeeeeCCeEEEEecCc
Confidence 489999999999999999999997 432 2 3444432 22 4999999999866543221
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHhh
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLSE 269 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~~ 269 (435)
.++++++| .+++++.+.+. +.+|+.+.+.+.. +..+...
T Consensus 150 ----------------------------~~~~l~~~-~~~~vv~~P~~-~~sT~~a~~~l~~--~~~~~~~--------- 188 (276)
T PRK14612 150 ----------------------------RLTPLELP-PVPLVLVNPGV-AVSARDAYRWLEP--EDFGPEL--------- 188 (276)
T ss_pred ----------------------------cceEcCCC-CcEEEEECCCC-CCCHHHHHHhhcc--ccCCCcc---------
Confidence 23355444 57899999999 8899988865421 1111000
Q ss_pred hHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCCC
Q 013834 270 SNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIE 349 (435)
Q Consensus 270 ~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~Ie 349 (435)
... .++.++.. ++.. .+.+.|...| -..
T Consensus 189 ~~~---------------------~l~~~l~~--------~d~~-----------~~~n~l~~~~------------~~~ 216 (276)
T PRK14612 189 DVE---------------------AILAALAR--------GEEP-----------PYWNSLEGPV------------FAR 216 (276)
T ss_pred cHH---------------------HHHHHHHh--------cccc-----------cccCCcHHHH------------HHh
Confidence 000 11122211 1100 0111111111 124
Q ss_pred CHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC-hhHHHHHHHhC
Q 013834 350 PESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS-GSNVTKAWSSV 399 (435)
Q Consensus 350 pp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~~l~~~w~~~ 399 (435)
.|+++++++.+++. |++|+++||+|+ ++++|+.++. .+++.+.+++.
T Consensus 217 ~p~l~~i~~~l~~~-Ga~~~~lSGsGp--tvfal~~~~~~a~~~~~~l~~~ 264 (276)
T PRK14612 217 HPELQEVLAALRAA-GLRGVLMSGSGS--TCFGLAEDAAQAQRAAAALRAR 264 (276)
T ss_pred ChHHHHHHHHHHhC-CCCEEEEcCcch--hhEEEeCCHHHHHHHHHHhHhh
Confidence 68899999998876 889999999997 8999986544 55666666554
No 37
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.09 E-value=1.7e-09 Score=106.70 Aligned_cols=90 Identities=17% Similarity=0.199 Sum_probs=66.0
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeee-eecCh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRY-VRFSP 188 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y-~rf~p 188 (435)
.+.|||||||..+|++.||..+++ .++ +++++.++|.. .| .|+....+|+..+ +...
T Consensus 93 ~~aGLGssss~aaa~l~al~~~~~-~~l----------~~~~l~~la~~--------iG--aDvpffl~g~~a~~~G~G- 150 (269)
T PRK14609 93 IGAGLGGGSSDAAFMLKLLNDKFN-LGL----------SDEELEAYAAT--------LG--ADCAFFIRNKPVYATGIG- 150 (269)
T ss_pred CCCcccHHHHHHHHHHHHHHHHhC-CCc----------CHHHHHHHHHH--------hC--CCceEEccCCCEEEEEeC-
Confidence 489999999999999999999998 554 66666665542 23 5999999998733 3321
Q ss_pred hhhhhhhhhhcCCchhhhhhhhccCCCccccccccC-CCCceEEEEecCCCCCCcHHHHHHHH
Q 013834 189 EVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSL-PPLMTLLLGEPGTGGSSTPSMVGAVK 250 (435)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~l-p~~~~Lllgdtg~~~s~T~~lV~~V~ 250 (435)
+ ++++++. ++.+.+++++.+. +.+|+.+++.+.
T Consensus 151 e----------------------------~l~~l~~~~~~~~~vlv~P~~-~~sT~~a~~~l~ 184 (269)
T PRK14609 151 D----------------------------IFSPIDLSLSGYYIALVKPDI-HVSTAEAYAGIK 184 (269)
T ss_pred C----------------------------eeEECCCCCCCCEEEEECCCC-CCChHHHHHhhh
Confidence 1 1223332 2467899999999 999999997664
No 38
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=3e-09 Score=109.91 Aligned_cols=67 Identities=16% Similarity=0.023 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCChhHHHH
Q 013834 322 SLLGARDAMLGIRYHMRLMGEAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVTK 394 (435)
Q Consensus 322 ~~~~l~~~i~~~r~lLr~lg~~sgv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~~~~l~~ 394 (435)
-+.+++++|++.|...+.+- +-++|++++|++.|...+| +|++++|||.|||.+.++..+..+.+.+
T Consensus 386 ~~~~~g~LmneS~~Sc~~~y-----Ecscpel~qL~kiala~g~-~gaRlTGaGwGGc~v~lvp~d~~~~~~~ 452 (489)
T KOG0631|consen 386 FLADFGRLMNESHRSCDVLY-----ECSCPELDQLCKIALANGG-VGARLTGAGWGGCTVALVPADLVDFAVA 452 (489)
T ss_pred hHHHHHHHhhhhhHHHHHHH-----hcCCHhHHHHHHHHHhcCC-ccceeeccccccceeeeccccchHHHHH
Confidence 36689999999999999976 4689999999999999866 4899999999999999998555554444
No 39
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.07 E-value=4.8e-09 Score=104.80 Aligned_cols=191 Identities=18% Similarity=0.129 Sum_probs=111.6
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPE 189 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~ 189 (435)
.+.|||||+|..+|++.|+..+++ .++ +.+++.++|.. .|+ |+....+|+..+-+-..+
T Consensus 99 ~~~GLGsgsa~aaa~l~al~~l~~-~~l----------~~~~l~~~a~~--------~ga--DvPffl~gg~a~~~G~Ge 157 (296)
T PRK14615 99 HGAGLGGGSADAAALLRHLNSIAP-HPL----------SPEALAKLAAG--------VGA--DVPFFLHNVPCRATGIGE 157 (296)
T ss_pred CCCCccHHHHHHHHHHHHHHHHcC-CCc----------CHHHHHHHHHH--------hCC--CCeeeccCCCEEEEeeEe
Confidence 489999999999999999999998 665 77666665432 344 998888898755432111
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCccccccccC-CCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHh
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSL-PPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLS 268 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~l-p~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~ 268 (435)
.++++++ ++.+.+++.+.+. +-+|+.+++.+..-+...+ .. .+.
T Consensus 158 ----------------------------~~~~l~~~~~~~~~vl~~P~~-~vsT~~a~~~~~~~~~~~~--~~-~~~--- 202 (296)
T PRK14615 158 ----------------------------ILTPVALGLSGWTLVLVCPEV-QVSTPWAYAAWDAANAKQI--AA-SSR--- 202 (296)
T ss_pred ----------------------------EEEECCCCCCCcEEEEECCCC-CcChHHHHHHhhhhccccc--cc-ccc---
Confidence 2334443 3467899999999 9999999865422110000 00 000
Q ss_pred hhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCC
Q 013834 269 ESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPI 348 (435)
Q Consensus 269 ~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~I 348 (435)
... .+...+... ... + ...+.. ...+.+.+...| + .
T Consensus 203 ~~~-~~~~~l~~~---~~~---~----~~~~~~---------------------~~~l~ndle~~~--~-~--------- 238 (296)
T PRK14615 203 KQN-RLRGCLTTE---GVA---D----RNPLSR---------------------GLWLHNSFEPVV--F-A--------- 238 (296)
T ss_pred ccc-chHHHHHhh---hcc---c----hhhhhh---------------------hhhccccchhHh--H-H---------
Confidence 000 000000000 000 0 000000 000011111111 1 1
Q ss_pred CCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC-hhHHHHHHHhCCceE
Q 013834 349 EPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS-GSNVTKAWSSVNVLA 403 (435)
Q Consensus 349 epp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~~l~~~w~~~gv~~ 403 (435)
..|+++++.+.+.+. |++|+++||+| .|+|+|+.++. .+++.+.+++.|+.+
T Consensus 239 l~P~l~~~~~~~~~~-GAlga~mSGSG--ptvfaL~~~~~~a~~i~~~l~~~g~~~ 291 (296)
T PRK14615 239 AHPELRRLKETLLRH-GAAAALMSGSG--SSVFGLFRRRAQAEAAFEMLKGHNIRV 291 (296)
T ss_pred hChHHHHHHHHHHhc-CCCEEEEeccC--cceEEEeCCHHHHHHHHHHHhhhccce
Confidence 478899999998876 88999999999 68999987654 567777777766544
No 40
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=99.00 E-value=6e-08 Score=98.19 Aligned_cols=221 Identities=18% Similarity=0.201 Sum_probs=122.5
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecC--
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFS-- 187 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~-- 187 (435)
...|||||||+++|.+.|+..+++ .++ +++++.++|. +| -+|+.|++++.|||.+.-+--
T Consensus 93 ~~~GLGSsaa~avA~~~a~~~l~~-~~l----------s~~el~~~a~------~g-e~s~~~va~~~~GG~vv~~G~~~ 154 (324)
T TIGR00144 93 AHSGLGSGTQLSLAVGRLVSEYYG-MKF----------TAREIAHIVG------RG-GTSGIGVASFEDGGFIVDGGHSS 154 (324)
T ss_pred CccCccHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHh------CC-CCCccceeeeeeCCEEEECCccc
Confidence 389999999999999999999998 665 7777766653 67 799999999999998555310
Q ss_pred hhhhhhhhhhhcCCchhhhhhhhccCCC--ccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHH
Q 013834 188 PEVLSSAQVAVKETPLQEVITGILKGKW--DHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWK 265 (435)
Q Consensus 188 p~~l~~~~~~~~~~~~~~~l~~l~~~~W--~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~ 265 (435)
..-....+.. ..++ +..+.++++| .+++++.-.+. . .|... .++....+..+ ...+-..
T Consensus 155 ~~~~~~~~~~--------------~~~~~~~~~~~r~~~p-~~~~vlviP~~-~-~t~~a-re~~~lp~~~~-i~~~dv~ 215 (324)
T TIGR00144 155 KEKSDFLPSS--------------ASSAKPAPVIARYDFP-DWNIILAIPEI-D-SVSGR-REVNIFQKYCP-VPLRDVE 215 (324)
T ss_pred ccccccCccc--------------ccCCCCCCeEEecCCC-CcEEEEEecCC-C-CCCcH-HHHHHHHhcCC-CCHHHHH
Confidence 0000000000 0001 0123345566 79999988776 5 45542 23311222111 1111001
Q ss_pred HHhhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHH-HhccccC
Q 013834 266 KLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHM-RLMGEAA 344 (435)
Q Consensus 266 ~L~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lL-r~lg~~s 344 (435)
.+. ++ ...+++.++.+ +| +..+++.|+.....- ..+-
T Consensus 216 ~~~-----------~~---------~l~~l~~al~~--------~d-----------~~~~~~~l~d~~~~~f~~~~--- 253 (324)
T TIGR00144 216 RIC-----------HL---------ILMKMMPAVVE--------GD-----------LDAFGESVNEIQGLGFKKIE--- 253 (324)
T ss_pred HHH-----------HH---------HHHHHHHHHHh--------cC-----------HHHHHHHHHHHHhhcchhhh---
Confidence 111 10 00122344433 33 226777776544332 1111
Q ss_pred CCCCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC---hhHHHHHHHhCCc--eEEeeeeCCCCcEE
Q 013834 345 GVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS---GSNVTKAWSSVNV--LALLVREDPHGVSL 415 (435)
Q Consensus 345 gv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~---~~~l~~~w~~~gv--~~L~~~~~~~Gv~~ 415 (435)
.+.-.+.+.++++.... ++|+.+||+|=- +++|+.++. .+.+.+.|.+.++ +.+.++.+..|+++
T Consensus 254 -~~~r~~li~~~~~~l~~---a~g~~iSGsGPT--v~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~Ga~v 323 (324)
T TIGR00144 254 -RELQDPLIKRIIDSMIS---APGAGMSSFGPT--VYAVTDEKPGNIAGAVADIFGPYGVYGRIIVTKARNRGAFI 323 (324)
T ss_pred -ccccCHHHHHHHHHHHh---ccCceecCCCCe--EEEEecCchHHHHHHHHHHhhhCCCceEEEEEccCCCCCEe
Confidence 12335666666666543 367899999875 888876532 2344556655553 45556666778876
No 41
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=98.93 E-value=6.4e-08 Score=96.21 Aligned_cols=203 Identities=22% Similarity=0.182 Sum_probs=124.7
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChhh
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPEV 190 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~~ 190 (435)
..|||||||.+||-+.|+..+++ .++ +++.+.++|-..|- |. =-|+.|+|||..-...
T Consensus 89 ~rGLGSSaAsiVAal~aan~l~~-~~L----------~~~~ll~~a~~~Eg--Hp-----DNVapa~lGG~~l~~~---- 146 (299)
T COG0083 89 GRGLGSSAASIVAALAAANELAG-LPL----------SKEELLQLALEIEG--HP-----DNVAPAVLGGLVLVEE---- 146 (299)
T ss_pred CCCCcHHHHHHHHHHHHHHHHhc-CCC----------CHHHHHHHHHHhcC--CC-----chHHHHhhCCEEEEee----
Confidence 56999999999999999999998 665 88888887766654 33 2477889999421110
Q ss_pred hhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHhhh
Q 013834 191 LSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLSES 270 (435)
Q Consensus 191 l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~~~ 270 (435)
.|+....++++|+.+++++...+. .-+|.. .++|+- ++.+ ..+ .
T Consensus 147 -----------------------~~~~~~~~v~~~~~~~~v~~iP~~-e~sT~~-aR~vLP--~~~~-~~d----a---- 190 (299)
T COG0083 147 -----------------------ESGIISVKVPFPSDLKLVVVIPNF-EVSTAE-ARKVLP--KSYS-RKD----A---- 190 (299)
T ss_pred -----------------------cCCceEEEccCCcceEEEEEeCCc-cccHHH-HHHhcc--ccCC-HHH----H----
Confidence 122233345566789999999988 888876 456662 1111 111 1
Q ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHH-HHHHHHHhccccCCCCCC
Q 013834 271 NSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAML-GIRYHMRLMGEAAGVPIE 349 (435)
Q Consensus 271 n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~-~~r~lLr~lg~~sgv~Ie 349 (435)
+..++++ ..++.+|.+ ++.+ .++..|+ .+|+--|.--
T Consensus 191 ----V~n~s~~-----------a~lv~al~~--------~~~~-----------l~~~~~~D~ihepyR~~L-------- 228 (299)
T COG0083 191 ----VFNLSRA-----------ALLVAALLE--------GDPE-----------LLRAMMKDVIHEPYRAKL-------- 228 (299)
T ss_pred ----HHHHHHH-----------HHHHHHHHc--------CCHH-----------HHHHHhccccchhhhhhh--------
Confidence 1111111 123444433 2211 2233332 2334334321
Q ss_pred CHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCC---ChhHHHHHHHhCC--ceEEeeeeCCCCcEEE
Q 013834 350 PESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGD---SGSNVTKAWSSVN--VLALLVREDPHGVSLE 416 (435)
Q Consensus 350 pp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~---~~~~l~~~w~~~g--v~~L~~~~~~~Gv~~e 416 (435)
-|..+++.+.+.+. |++|+-+||||=- +++|+.+. ....+.+.|.+.+ .+...+..+..|+++.
T Consensus 229 ~P~~~~v~~~a~~~-gA~g~~lSGAGPT--i~al~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~v 297 (299)
T COG0083 229 VPGYAEVREAALEA-GALGATLSGAGPT--VFALADESDAEKAAALLEELYEQGIKGRVHILALDSDGARVV 297 (299)
T ss_pred CccHHHHHHHHhhC-CceEEEEecCCCe--EEEEeccchhhHHHHHHHHHHHhCCcceEEEEeecCCcceEe
Confidence 35678888777776 8999999999987 89998764 2444555665544 3466777788886654
No 42
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=98.87 E-value=4.8e-09 Score=84.55 Aligned_cols=71 Identities=21% Similarity=0.186 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHH--HHhccccCCCCCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC-hhHHHHHHHhC
Q 013834 323 LLGARDAMLGIRYH--MRLMGEAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS-GSNVTKAWSSV 399 (435)
Q Consensus 323 ~~~l~~~i~~~r~l--Lr~lg~~sgv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~~l~~~w~~~ 399 (435)
+..++++|+.++.. .... .+.+|++.++++.+++. |++++++||||||+|+++|+.+++ .+++.++|++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~-Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~~~ 82 (85)
T PF08544_consen 10 LELLGELMNENQENEPENYR------EVLTPEIDELKEAAEEN-GALGAKMSGSGGGPTVFALCKDEDDAERVAEALREH 82 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHT------THHHHHHHHHHHHHHHT-TESEEEEETTSSSSEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchHHH------HHcCHHHHHHHHHHHHC-CCCceecCCCCCCCeEEEEECCHHHHHHHHHHHHHh
Confidence 34899999998885 2232 45899999999999887 789999999999999999995544 68888888765
Q ss_pred C
Q 013834 400 N 400 (435)
Q Consensus 400 g 400 (435)
.
T Consensus 83 ~ 83 (85)
T PF08544_consen 83 Y 83 (85)
T ss_dssp T
T ss_pred C
Confidence 4
No 43
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.79 E-value=1.5e-07 Score=94.20 Aligned_cols=179 Identities=15% Similarity=0.135 Sum_probs=100.5
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPE 189 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~ 189 (435)
.+.|||||||-..+++.+|+..++ +. ..+++.++|... |+ |+.+..+|+..+.+-..+
T Consensus 104 ~~aGLGggSs~Aaa~l~~l~~~~~-l~-----------~~e~L~~lA~~l--------Ga--DvP~~l~G~~a~~~g~Ge 161 (297)
T PRK14613 104 PAGGLGGGSTNAASLLNFLFSWRN-FF-----------TSDEMQVFAKEI--------GS--DVPFFLGEGHAFVTGKGE 161 (297)
T ss_pred ccCCccccHHHHHHHHHHHHhcCC-CC-----------cHHHHHHHHHHh--------CC--ccchhhcCCeEEEecCCc
Confidence 388999999998877777776554 21 335555554332 33 999998888744432211
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHhh
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLSE 269 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~~ 269 (435)
.++++++|+.+ +++...+. +-+|+.+.+.+.+...... ....+..+
T Consensus 162 ----------------------------~~~~l~~~~~~-~vlv~P~~-~vsT~~a~~~l~~~~~~~~--~~~~~~~~-- 207 (297)
T PRK14613 162 ----------------------------IMEEIEVHKGQ-GILALTPQ-VMNTGEMYALLKKPLQESA--SQKNGNTL-- 207 (297)
T ss_pred ----------------------------EEEEcCCCCCe-EEEEECCC-CcChHHHHHhcchhhcccc--cccccccc--
Confidence 23345555554 46777898 9999998865532111111 11111100
Q ss_pred hHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHH-HHHHHHHHHHhccccCCCCC
Q 013834 270 SNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARD-AMLGIRYHMRLMGEAAGVPI 348 (435)
Q Consensus 270 ~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~-~i~~~r~lLr~lg~~sgv~I 348 (435)
.. .++.++.. +|.+ .+.. .++..+.....+
T Consensus 208 -~~---------------------~~~~al~~--------~~~~-----------~l~~~l~ndle~~~~~l-------- 238 (297)
T PRK14613 208 -SE---------------------DLISSLKV--------GDWV-----------SLQGRLENDFEPVAFQL-------- 238 (297)
T ss_pred -HH---------------------HHHHHHHc--------CCHH-----------HHHHHhcccchHHHHHh--------
Confidence 00 11222211 1111 2212 223333333332
Q ss_pred CCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC-hhHHHHHHH
Q 013834 349 EPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS-GSNVTKAWS 397 (435)
Q Consensus 349 epp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~~l~~~w~ 397 (435)
.|++.++.+.+.+. |++++++|||| .|+|+|+.+.. .+++.+.++
T Consensus 239 -~P~~~~i~~~~~~~-Ga~~~~mSGSG--ptvf~l~~~~~~a~~~~~~l~ 284 (297)
T PRK14613 239 -HPELGVLKDKFLEF-GSSYCSLTGSG--SSMYGLVQGLEIQEELLPRLR 284 (297)
T ss_pred -CcHHHHHHHHHHHc-CCCEEEEEccc--cceEEEeCCHHHHHHHHHHHH
Confidence 57789999988876 88999999994 57999986643 455555443
No 44
>PTZ00299 homoserine kinase; Provisional
Probab=98.77 E-value=1e-07 Score=96.93 Aligned_cols=206 Identities=19% Similarity=0.216 Sum_probs=118.9
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccc-hhheeeCCeeeeecC-
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFD-VSSAVYGSQRYVRFS- 187 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~D-vaaAvyGg~~Y~rf~- 187 (435)
...|||||||.++|.+.|+..+++ .+++ ..+++++.++|..- .| =.| |+.+.|||..-...+
T Consensus 93 ~~~GLGSSsA~avA~l~a~n~l~g-~~l~-------~~~~~el~~~A~~~----EG----HpDNVapal~GG~~~~~~~~ 156 (336)
T PTZ00299 93 YGCGCGSSSAAAVAGFVAGMKLCG-LTME-------TENEEALLQAIAKF----EG----HPDNAAPAIYGGIQLVYKKD 156 (336)
T ss_pred ccCCccHHHHHHHHHHHHHHHHhC-CCCC-------ccCHHHHHHHHHhh----cC----CcccHHHHHhCCEEEEEecC
Confidence 489999999999999999999998 5541 12455555444222 22 258 999999998322211
Q ss_pred hhhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCC--CCcHHHHHHHHHHhhhCchhH---HH
Q 013834 188 PEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGG--SSTPSMVGAVKKWQKSDPQKS---QE 262 (435)
Q Consensus 188 p~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~--s~T~~lV~~V~~wr~~~pe~a---~~ 262 (435)
+. ++ ...+++.|+++.+++.-.+. . -+|.. -++|+ |++. +.
T Consensus 157 ~g------------------------e~--~~~~i~~~~~~~~vv~iP~~-~~~~sT~~-aR~vL------P~~v~~~da 202 (336)
T PTZ00299 157 NG------------------------RF--LTYRVPTPPNLSVVLFVPHN-KMKANTHV-TRNLI------PTSVSLEDA 202 (336)
T ss_pred CC------------------------ce--EEEecCCCCCeEEEEEECCC-CccccHHH-HHhhC------cccCcHHHH
Confidence 10 00 12245566678888887665 3 36743 34444 3221 11
Q ss_pred HHHHHhhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccc
Q 013834 263 TWKKLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGE 342 (435)
Q Consensus 263 ~~~~L~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~ 342 (435)
++ .+... ..++.++.+ +|.+ .++....+.|+
T Consensus 203 v~-n~~~~----------------------~~lv~al~~--------~d~~-----------ll~~~~D~lhe------- 233 (336)
T PTZ00299 203 VF-NISRT----------------------SILVLALST--------GDLR-----------MLKSCSDKLHE------- 233 (336)
T ss_pred HH-hhhHH----------------------HHHHHHHHh--------CCHH-----------HHHhchhcccC-------
Confidence 10 11110 012233332 2211 22221112222
Q ss_pred cCCCCCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecC-----------CC-hhHH----HHHHHhCCc--eEE
Q 013834 343 AAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLG-----------DS-GSNV----TKAWSSVNV--LAL 404 (435)
Q Consensus 343 ~sgv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~-----------~~-~~~l----~~~w~~~gv--~~L 404 (435)
...+.-.-|.++++.+.+.+. |++|+-+||||== +++|+.. +. .+++ .+.|.+.|+ +.+
T Consensus 234 p~R~~~liP~~~~v~~~~~~~-Ga~g~~lSGSGPT--v~al~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 310 (336)
T PTZ00299 234 QQRSDALFPHFRPCVKAAREA-GAHYAFLSGAGPS--VCALVGGRHGDPLTQPREERKAESVAEAMIKAAEAVGVAGRVI 310 (336)
T ss_pred cccccccCccHHHHHHHHHHC-CCeEEEEEchhhh--heEEeccccccccccccchhHHHHHHHHHHHHHHHcCCceEEE
Confidence 222201256799999998877 8899999999985 8999762 11 2334 445665554 677
Q ss_pred eeeeCCCCcEEEe
Q 013834 405 LVREDPHGVSLES 417 (435)
Q Consensus 405 ~~~~~~~Gv~~e~ 417 (435)
.++.+.+|+++..
T Consensus 311 ~~~~~~~G~~~~~ 323 (336)
T PTZ00299 311 ITQPSDQGVHLVG 323 (336)
T ss_pred EccCCCCCcEEEe
Confidence 8888889999984
No 45
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.56 E-value=1.1e-06 Score=87.30 Aligned_cols=88 Identities=24% Similarity=0.269 Sum_probs=61.9
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPE 189 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~ 189 (435)
.+.|||||+|-.++++.+|..+++ + +.+++.++|.. .|.||...+||+..+.+--.+
T Consensus 95 ~~aGLGggSs~aaa~L~~ln~l~~-l------------s~~~l~~ia~~----------lGaDvPffl~g~~a~~~G~Ge 151 (283)
T PRK14610 95 VSAGLAGGSADAAAVIRLLGKLWG-I------------DEQILNELALS----------VGSDVPACLDSKTLFVRGIGE 151 (283)
T ss_pred CCCcCCccHHHHHHHHHHHHHHhC-C------------CHHHHHHHHHH----------hCCCCcEEEECCeEEEEeccc
Confidence 489999999999999999999996 3 55556665543 578999999999876653222
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCccccccccC-CCCceEEEEec-CCCCCCcHHHHHHH
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSL-PPLMTLLLGEP-GTGGSSTPSMVGAV 249 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~l-p~~~~Lllgdt-g~~~s~T~~lV~~V 249 (435)
+++|+.. +....+++... +. +-+|+.+.+++
T Consensus 152 ----------------------------~l~~l~~~~~~~~~vl~~p~~~-~~sT~~vy~~~ 184 (283)
T PRK14610 152 ----------------------------DILLLPDLSLPTYVVLVAPKGK-FLSTRKVFNKY 184 (283)
T ss_pred ----------------------------EEEECcccCCCCeEEEEECCCC-ccChHHHHHhh
Confidence 2334421 11234677755 66 78999888765
No 46
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=98.48 E-value=8.7e-06 Score=84.72 Aligned_cols=206 Identities=17% Similarity=0.193 Sum_probs=128.0
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHc--CCCCCccchhheeeCCeeeeecCh
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQ--GKIGSGFDVSSAVYGSQRYVRFSP 188 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQ--Gk~GSG~DvaaAvyGg~~Y~rf~p 188 (435)
++|||.|+-+..-.++||...-+..+ .+..++|.+-...-...| -.-|+-.|+--+.|-|+.--|---
T Consensus 703 GSGLGTSSIlA~TaLaAi~~aagr~~----------gTeaLiHailHtvlrlEQilTTGGGWQDQ~G~im~GIK~gr~ra 772 (948)
T KOG4644|consen 703 GSGLGTSSILACTALAAICAAAGRAD----------GTEALIHAILHTVLRLEQILTTGGGWQDQCGAIMEGIKKGRCRA 772 (948)
T ss_pred CCCcchHHHHHHHHHHHHHHhhcccc----------chhHhHHHHHHHHHHHHHHhhcCCchhhhccchhhhhhhccchh
Confidence 89999999998888899998887333 255567776664444444 112778999999998872211000
Q ss_pred hhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCC------ceEEEEecCCCCCCcHHHHHHHH-HHhhhCchhHH
Q 013834 189 EVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPL------MTLLLGEPGTGGSSTPSMVGAVK-KWQKSDPQKSQ 261 (435)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~------~~Lllgdtg~~~s~T~~lV~~V~-~wr~~~pe~a~ 261 (435)
+ + +-..+++++.+|.+ -+|++.+||. .+-.+.+...|. .|..+-++.
T Consensus 773 e----l-------------------~~~ie~eeiTipe~f~ekL~dhLLLVYTGK-TRLAkNLLQdViRn~far~~a~-- 826 (948)
T KOG4644|consen 773 E----L-------------------NHGIEHEEITIPEEFREKLEDHLLLVYTGK-TRLAKNLLQDVIRNFFARCKAT-- 826 (948)
T ss_pred h----c-------------------cCCceeeeecCCHHHHHHHhhcEEEEEeCc-hHHHHHHHHHHHHHHHHhhHHH--
Confidence 0 0 01113334444432 4799999998 776667777765 344332211
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhcc
Q 013834 262 ETWKKLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMG 341 (435)
Q Consensus 262 ~~~~~L~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg 341 (435)
...+.+|.+..+ ...+.+.. +. +.-+++++....+..+-|+
T Consensus 827 -------------~Q~ah~l~~~td-------ecAegf~k--------Gs-----------l~LlgecL~~YweqKk~Ma 867 (948)
T KOG4644|consen 827 -------------KQKAHKLAEATD-------ECAEGFEK--------GS-----------LELLGECLEHYWEQKKFMA 867 (948)
T ss_pred -------------HHHHHHHHHHHH-------HHHHHHhc--------Cc-----------HHHHHHHHHHHHHhhhccC
Confidence 111122221111 11222322 22 3478999999999999998
Q ss_pred ccCCCCCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC-hhHHHHH
Q 013834 342 EAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS-GSNVTKA 395 (435)
Q Consensus 342 ~~sgv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~~l~~~ 395 (435)
. .-||+..++|+|......-.-.|-..||||||.+++++.++. .+.|+.-
T Consensus 868 p----gCEPl~Vr~lldmLaph~hgesgw~AGAGGGGFiYLl~kEpqqkeaiEa~ 918 (948)
T KOG4644|consen 868 P----GCEPLNVRELLDMLAPHKHGESGWAAGAGGGGFIYLLIKEPQQKEAIEAF 918 (948)
T ss_pred C----CCCCCcHHHHHHHhccccccccchhccCCCCcEEEEEecCCCCHHHHHHh
Confidence 6 479999999999765433212355899999999999998876 5566553
No 47
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.41 E-value=6.7e-06 Score=81.29 Aligned_cols=89 Identities=22% Similarity=0.253 Sum_probs=64.5
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPE 189 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~ 189 (435)
.+.|||||+|..+|++.||..+++ .++ +++++.++|+. . |.|+.+..+|+..+.+-..+
T Consensus 98 ~gaGLGssSs~aaa~l~al~~l~~-~~l----------s~~el~~la~~--------i--gaDvp~~l~g~~~~~~g~g~ 156 (271)
T PRK00343 98 MGGGLGGGSSDAATTLVALNRLWQ-LGL----------SRDELAELGLK--------L--GADVPVFVRGHAAFAEGIGE 156 (271)
T ss_pred CcCCCCcchHHHHHHHHHHHHHhC-CCc----------CHHHHHHHHHH--------h--CCCceEEecCCcEEEEecCC
Confidence 489999999999999999999998 665 77767666532 2 34988888887755432111
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHH
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAV 249 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V 249 (435)
+++++++| ...+++++++. +.+|+.+++++
T Consensus 157 ----------------------------~~~~l~~~-~~~~vl~~p~~-~~sT~~~~~~~ 186 (271)
T PRK00343 157 ----------------------------ILTPVDLP-EKWYLVVKPGV-HISTAEIFSDP 186 (271)
T ss_pred ----------------------------EEEECCCC-CcEEEEEeCCC-CcChHHHHhhh
Confidence 23345544 35688999998 99999988654
No 48
>PLN02407 diphosphomevalonate decarboxylase
Probab=98.06 E-value=0.00037 Score=70.78 Aligned_cols=53 Identities=34% Similarity=0.360 Sum_probs=43.4
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCC-HHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeee
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGD-LDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYV 184 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~-~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~ 184 (435)
..|||||||...|++.||..+++ +++ + .+.+..||. .|||-|.. ++|||.++.
T Consensus 117 aaGLaSSAs~~aAl~~al~~~~~-~~~----------~~~~~ls~lAr---------~GSGSa~r-S~~Gg~v~w 170 (343)
T PLN02407 117 AAGLASSAAGFACLVFALAKLMN-VKE----------DFPGELSAIAR---------QGSGSACR-SLYGGFVKW 170 (343)
T ss_pred ccchHHHHHHHHHHHHHHHHHhC-CCC----------CchHHHHHHHh---------ccChHHHH-HhhCCeEEe
Confidence 67999999999999999999998 554 6 666666655 45999998 999999444
No 49
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=98.00 E-value=0.00082 Score=67.68 Aligned_cols=51 Identities=29% Similarity=0.386 Sum_probs=39.1
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCee
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQR 182 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~ 182 (435)
..|||||||..+|++.|+..+++ +++ +++++.++|+.. || ..+.++|||.+
T Consensus 97 ~aGLgSSAA~~aA~~~Al~~l~~-l~l----------~~~eL~~lA~~g---------sG-sa~~s~~GG~v 147 (305)
T TIGR01240 97 AAGLASSASGLAALVSACAKLYQ-LPL----------DTSELSRIARKG---------SG-SACRSLFGGYV 147 (305)
T ss_pred CCccchHHHHHHHHHHHHHHHcC-CCC----------CHHHHHHHHHHh---------cC-CeeeeeecCeE
Confidence 78999999999999999999998 654 666665555432 22 25569999984
No 50
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.85 E-value=0.00022 Score=71.17 Aligned_cols=88 Identities=15% Similarity=0.074 Sum_probs=63.2
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPE 189 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~ 189 (435)
.+.|||||+|-.++++.++..+++ .++ +++++.++|.. .|+ |+....+|+..+.+-..+
T Consensus 91 ~gaGLGggSS~aAa~L~~ln~l~~-~~l----------s~~eL~~lA~~--------lGa--DvPffl~~g~a~~~G~Ge 149 (288)
T PRK00650 91 IGAGLAGGSSNAATALFALNQIFQ-TGL----------SDEELRSLAEK--------IGM--DTPFFFSTGSALGVGRGE 149 (288)
T ss_pred CcCCcCcchhHHHHHHHHHHHHhC-CCc----------CHHHHHHHHHH--------hCC--cchhhhcCceEEEEecCC
Confidence 388999999999999999999998 665 77666665532 344 999999988755442211
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHH
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVG 247 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~ 247 (435)
++++++.|+.+++++...+. +-+|+..=+
T Consensus 150 ----------------------------~l~~~~~~~~~~~vlv~P~~-~vsT~~ay~ 178 (288)
T PRK00650 150 ----------------------------KIIALEESVSDRYVLYFSSE-GVLTSRAFA 178 (288)
T ss_pred ----------------------------EEEECcCCCCceEEEEeCCC-CCChHHHHH
Confidence 23345455567788888888 888876543
No 51
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.74 E-value=0.0023 Score=62.57 Aligned_cols=64 Identities=27% Similarity=0.289 Sum_probs=45.3
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCcc-chhheeeCCeeee
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGF-DVSSAVYGSQRYV 184 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~-DvaaAvyGg~~Y~ 184 (435)
.+.||.||+|++.|++.|++.+.+ .++ +...+.+++..+-..+-=-+-+-| |..++.|||.+.+
T Consensus 81 ~~~GLkSSSA~~nAlv~A~~~~~g-~~~----------~~~~i~~l~a~~S~~aGvSvTGA~DDa~AS~~GG~~iT 145 (278)
T COG1685 81 VGSGLKSSSAASNALVKAVLKALG-EEI----------DDFEILRLGARASKEAGVSVTGAFDDACASYLGGIVIT 145 (278)
T ss_pred cccCcchhHHHHHHHHHHHHHHcC-CCC----------ChhHHHHHHHHHHHhcCceEeccchHHHHHHhCCeEEe
Confidence 389999999999999999999998 665 666677776666554421122234 5666778887433
No 52
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=96.76 E-value=0.11 Score=52.62 Aligned_cols=50 Identities=36% Similarity=0.477 Sum_probs=38.0
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCe
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQ 181 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~ 181 (435)
..|||||||...|+++|+..+++ .++ +...|-++|..+ .||+ +-++|||.
T Consensus 102 aaGLaSSaag~AAl~~Al~~~~~-~~~----------d~~~lS~~AR~g-------SGSa---~RS~~Gg~ 151 (329)
T COG3407 102 AAGLASSAAGAAALAAALNRLYD-LDL----------DDEFLSRIARLG-------SGSA---SRSIFGGF 151 (329)
T ss_pred cccccccHHHHHHHHHHHHhhhc-cCC----------CHHHHHHHHHHh-------ccch---hhhhcCCe
Confidence 78999999999999999999887 554 665555555443 4554 46889996
No 53
>PRK05905 hypothetical protein; Provisional
Probab=96.49 E-value=0.046 Score=53.82 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=60.7
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeC-CeeeeecCh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYG-SQRYVRFSP 188 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyG-g~~Y~rf~p 188 (435)
.+.||||++|=..+++.+|..+++ + +.+++.++|.. . |-||--..+| +..+-+--.
T Consensus 97 ~~aGLGggSSDAAa~L~~Ln~l~~-l------------s~~~L~~ia~~--------l--GADVPFfl~g~~~a~~~G~G 153 (258)
T PRK05905 97 IGSGLGSGSSNAAVLMKWILEFEG-I------------NEINYKDVVNK--------L--GSDIPFFLSGYKTAYISDYG 153 (258)
T ss_pred CcCCCCCCchHHHHHHHHHHHHhC-C------------CHHHHHHHHHH--------h--CCCcceEEeCCccEEEEeeC
Confidence 378999999999999999999987 3 44444443321 2 2599999999 775554211
Q ss_pred hhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHH
Q 013834 189 EVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGA 248 (435)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~ 248 (435)
+ .++|+.+|+...+++...+. +-+|+.+-++
T Consensus 154 E----------------------------~l~pl~~~~~~~~vlv~P~~-~vST~~vY~~ 184 (258)
T PRK05905 154 S----------------------------QVEDLIGQFKLTYKVIFMNV-NVSTKKVFEK 184 (258)
T ss_pred c----------------------------eeEECCCCCCceEEEECCCC-CCCHHHHHHh
Confidence 1 34566555456799999998 9999876653
No 54
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=96.49 E-value=0.48 Score=47.21 Aligned_cols=220 Identities=15% Similarity=0.165 Sum_probs=126.9
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeee-cChh
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVR-FSPE 189 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~r-f~p~ 189 (435)
-.||||--.++-|+..|++.+++ +++ + +..||... =.| --||.=+++.-|||.+--- |...
T Consensus 83 HvGLGS~TQlaLa~a~ai~~i~g-l~~----------~---~~elA~~v---gRG-~tSgiGv~afe~GGFIVDGGh~~~ 144 (312)
T COG1907 83 HVGLGSTTQLALAVASAILEIYG-LEL----------S---IRELAFAV---GRG-GTSGIGVYAFEYGGFIVDGGHSFG 144 (312)
T ss_pred hcCCChHHHHHHHHHHHHHHHhc-CCC----------C---HHHHHHHH---ccC-CccceeEEEEEECCEEEECCcccC
Confidence 47999999999999999999998 654 3 35555444 235 5789999999999974321 1100
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHH--HHHHhhhCchhHHHHHHHH
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGA--VKKWQKSDPQKSQETWKKL 267 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~--V~~wr~~~pe~a~~~~~~L 267 (435)
-++ . .+. | -+-+..+|.+++++++=... +. .+..+ +.-.++.+|
T Consensus 145 ---f~p--s--~~s------------P-~I~R~dfPedW~~VlaIP~~-~r---g~~~~~E~~if~~~~p---------- 190 (312)
T COG1907 145 ---FLP--S--SAS------------P-LIFRLDFPEDWRFVLAIPEV-ER---GVSGRREVDIFKKYCP---------- 190 (312)
T ss_pred ---ccc--C--CCC------------c-eeeeecCCCceEEEEEecCC-Cc---cccchHHHHHHHhcCC----------
Confidence 000 0 010 1 23345677778888875554 32 22222 112222222
Q ss_pred hhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCC
Q 013834 268 SESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVP 347 (435)
Q Consensus 268 ~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~ 347 (435)
........++++-- ..++-++.+ .| +..+++.+++++.+.-+.-......
T Consensus 191 --~p~~~~~~ls~~vL---------m~mmPavvE--------~D-----------ie~fg~~l~~iQ~l~g~~f~~~e~~ 240 (312)
T COG1907 191 --VPLEEVGELSHRVL---------MKMMPAVVE--------RD-----------IESFGEALNEIQELGGKWFKKVEGG 240 (312)
T ss_pred --CCHHHHHHHHHHHH---------HHHhHHHHh--------hC-----------HHHHHHHHHHHHHHHhhhhhhhhce
Confidence 11111222222110 122223322 33 3489999999999985455555667
Q ss_pred CCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCCh----hHHHHHHHhCCc--eEEeeeeCCCCcEEE
Q 013834 348 IEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSG----SNVTKAWSSVNV--LALLVREDPHGVSLE 416 (435)
Q Consensus 348 Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~~----~~l~~~w~~~gv--~~L~~~~~~~Gv~~e 416 (435)
+-++...++++.+.+. +++|..|- .|=.++.|+.+... ..+.+.+.+.|+ +.+..+....|+.++
T Consensus 241 ~~~~~V~~iv~~m~~~--a~~agqSS--wGPtvY~i~d~~~~~~~~~~~~~~~~~~g~~gev~vT~~rN~Ga~i~ 311 (312)
T COG1907 241 LQREDVKEIVDEMVEA--AYGAGQSS--WGPTVYGIVDSREAGSVVRKLIDILLEEGIGGEVFVTKARNRGAEIL 311 (312)
T ss_pred eccHHHHHHHHHHHHh--cccccccc--cCCEEEEeccccccchHHHHHHHHHHhcCCceEEEEeccCCCCceec
Confidence 7899999999988776 34666652 55678999876653 334445555443 455555666676553
No 55
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=96.41 E-value=0.11 Score=51.82 Aligned_cols=89 Identities=30% Similarity=0.356 Sum_probs=60.2
Q ss_pred CCCCCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeec
Q 013834 107 PEVAKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRF 186 (435)
Q Consensus 107 ~~v~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf 186 (435)
|-..+.|=|||=|- +++.+|..+++ ..+ +.+++.+|+..- | -||--+++|+-.+-+-
T Consensus 95 Pv~aGLGGGSSdAA--a~L~~Ln~lw~-~~l----------s~~eL~~Lg~~L-----G-----aDVPffl~g~tA~a~G 151 (289)
T COG1947 95 PVGAGLGGGSSDAA--AVLVALNELWG-LGL----------SLEELAELGLRL-----G-----ADVPFFLSGGTAFAEG 151 (289)
T ss_pred cccCcCccchHHHH--HHHHHHHHHhC-CCC----------CHHHHHHHHHHh-----C-----CCcCeeeeCCceEEEE
Confidence 44455666666554 56789999998 665 776666665322 3 5999999998765543
Q ss_pred ChhhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHH
Q 013834 187 SPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVG 247 (435)
Q Consensus 187 ~p~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~ 247 (435)
-.+ +++++.=++...+++...+. +.+|+.+-+
T Consensus 152 ~GE----------------------------~l~~~~~~~~~~~vl~~P~v-~vsT~~vy~ 183 (289)
T COG1947 152 RGE----------------------------KLEPLEDPPEKWYVLAKPGV-GVSTKEVYK 183 (289)
T ss_pred ccc----------------------------eeeECCCCCCceEEEEeCCC-CCChHHHHc
Confidence 222 34455534567899999999 999998665
No 56
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=96.06 E-value=0.19 Score=49.54 Aligned_cols=95 Identities=23% Similarity=0.174 Sum_probs=63.9
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPE 189 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~ 189 (435)
.+.|+|-|||...+.+.|+...++ + +.+...+.|+.++... -.+-+||.|-.+||.++|- .|
T Consensus 85 ~G~G~G~Sga~AL~~Ala~a~~~~-~------------~~~~a~~~AH~aEV~~---gtGLGDVvAq~~GGlViR~-~p- 146 (283)
T COG1829 85 LGCGYGVSGAGALGTALALAEELG-L------------GEESAARIAHVAEVEN---GTGLGDVVAQYTGGLVIRV-KP- 146 (283)
T ss_pred CCcccchhHHHHHHHHHHHHhhcC-C------------CHHHHHHHHHHHHHHc---CCCchHHHHHhcCcEEEEe-cC-
Confidence 489999999998888888888776 3 3444566666665442 2456799999999987763 11
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHH
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVG 247 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~ 247 (435)
|-| =-.+++.++.|+ ++++....+ .=+|.+++.
T Consensus 147 ----------G~P------------g~~~vd~Ip~~~-~~V~~~~~g--~l~T~~vi~ 179 (283)
T COG1829 147 ----------GGP------------GEGEVDRIPVPG-LRVITISLG--ELSTKSVIT 179 (283)
T ss_pred ----------CCC------------CeEEEEEeecCC-ceEEEEEcc--cccHHHhhh
Confidence 111 001455666665 888888775 557777664
No 57
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=95.64 E-value=0.067 Score=52.62 Aligned_cols=88 Identities=23% Similarity=0.223 Sum_probs=62.4
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeC-CeeeeecCh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYG-SQRYVRFSP 188 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyG-g~~Y~rf~p 188 (435)
.+.|||||+|-.++++.++..+++ +++ +++++.++|..- | -||--..+| +..+-+--.
T Consensus 97 ~gaGLGggSSdAAA~L~aln~l~~-~~l----------s~~eL~~lA~~l-----G-----aDvPffl~~~~~a~~~G~G 155 (257)
T PRK04181 97 TGAGLGGGSSDAATFLLMLNEILN-LKL----------SLEELAEIGSKV-----G-----ADVAFFISGYKSANVSGIG 155 (257)
T ss_pred CcCcccccHHHHHHHHHHHHHHhC-CCc----------CHHHHHHHHHHh-----C-----CCccEEecCCceEEEEeeC
Confidence 489999999999999999999998 665 777776665222 3 599999999 765443211
Q ss_pred hhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHH
Q 013834 189 EVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGA 248 (435)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~ 248 (435)
+ .++|++.++ ..+++...+. +-+|+..-++
T Consensus 156 e----------------------------~l~~l~~~~-~~~~lv~P~~-~vsT~~vy~~ 185 (257)
T PRK04181 156 E----------------------------IVEEFEEEI-LNLEIFTPNI-FCSTKAVYKA 185 (257)
T ss_pred C----------------------------eeEECCCCC-CeEEEECCCC-CcCHHHHHHH
Confidence 1 234443222 2488888888 9999887653
No 58
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.20 E-value=1.4 Score=43.30 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=30.7
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHH
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSA 159 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~A 159 (435)
+-||+||-|=++|++.|++.||+ .++ ...+|.+|+...
T Consensus 95 gKG~ASSTADl~At~~A~A~~l~-~~l----------~es~iakLcv~i 132 (293)
T COG4542 95 GKGMASSTADLVATARATARFLG-REL----------RESEIAKLCVSI 132 (293)
T ss_pred cccccccHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHhhc
Confidence 67999999999999999999998 554 666666665444
No 59
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=92.32 E-value=7.5 Score=39.43 Aligned_cols=54 Identities=35% Similarity=0.431 Sum_probs=39.1
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCe-eeee
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQ-RYVR 185 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~-~Y~r 185 (435)
-.||-||||=-.|++-||..+|+ ++. +.+++-.+| -|| .||-. =+.|||. .+++
T Consensus 117 AAGLASSAAG~Aalv~alarly~-l~~----------~~~els~iA------R~G-SGSAC---RSl~GG~V~W~m 171 (395)
T KOG2833|consen 117 AAGLASSAAGFAALVLALARLYG-LDD----------SPEELSRIA------RQG-SGSAC---RSLYGGFVAWEM 171 (395)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhC-CCC----------CHHHHHHHH------hcc-Cchhh---hhhhcceeEeec
Confidence 78999999999999999999998 664 665554443 244 44422 4679998 4443
No 60
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=33.33 E-value=1.3e+02 Score=30.15 Aligned_cols=64 Identities=17% Similarity=0.277 Sum_probs=41.1
Q ss_pred HHHHHHHHHHH--hcCCceeeeecCCCccceeEEEecCCC---hhHHHHHHHhCCce--EEeeeeCCCCcEEE
Q 013834 351 ESQTQLLNATM--DMEGVLLAGVPGAGGFDAVFAVTLGDS---GSNVTKAWSSVNVL--ALLVREDPHGVSLE 416 (435)
Q Consensus 351 p~lt~Lld~a~--~~~Gvlgakv~GAGGGD~iiaL~~~~~---~~~l~~~w~~~gv~--~L~~~~~~~Gv~~e 416 (435)
|-+++++.++. ..||.+|.-++|||=- +.+|..+.- .+++.+++.+.|++ +..++..-+|+.++
T Consensus 283 PGl~~il~~~~p~t~pGl~GiclSGAGPT--~lAlatenf~eI~~~mv~~F~K~G~kcs~~~l~pa~Dga~v~ 353 (355)
T KOG1537|consen 283 PGLEAILKAALPATYPGLFGICLSGAGPT--ALALATENFQEIGEKMVEAFWKVGHKCSVASLKPALDGAGVR 353 (355)
T ss_pred ccHHHHHHhhCcccCCceeeEEecCCCCe--eEEEecCcHHHHHHHHHHHHHhhCceeeeEeeccccCCccee
Confidence 55777776663 4689999999999875 677765332 24455555566654 45555555565544
No 61
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=27.19 E-value=2.4e+02 Score=24.11 Aligned_cols=79 Identities=16% Similarity=0.251 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCCCCH
Q 013834 272 SALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIEPE 351 (435)
Q Consensus 272 ~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~Iepp 351 (435)
..+..+|..+.+++.-+++.-..+++.|..+. .|. . .....|.+++=+.+.-+|.+=..-+..++++
T Consensus 32 ~~~~ktl~y~~kFsk~~~e~a~elve~L~~~~--~l~-------e----~~a~~I~nL~P~~~dElrai~~~~~~~~~~e 98 (112)
T PRK14981 32 YELRRTLDYLNRFSKLDPEDAEELVEELLELE--KMK-------E----KTAVKIADILPETRDELRAIFAKERYTLSPE 98 (112)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcc--CCC-------H----HHHHHHHhcCCCCHHHHHHHHHHhccCCCHH
Confidence 34556666666666554444344444443311 110 0 1122455554444555555544445678999
Q ss_pred HHHHHHHHHHhc
Q 013834 352 SQTQLLNATMDM 363 (435)
Q Consensus 352 ~lt~Lld~a~~~ 363 (435)
.+++++|...++
T Consensus 99 ~l~~ILd~l~k~ 110 (112)
T PRK14981 99 ELDEILDIVKKY 110 (112)
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 62
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=27.01 E-value=4.2e+02 Score=29.60 Aligned_cols=6 Identities=33% Similarity=1.116 Sum_probs=3.4
Q ss_pred hhhhhh
Q 013834 304 SEKWME 309 (435)
Q Consensus 304 ~~~w~~ 309 (435)
.++|.+
T Consensus 579 ~~~wL~ 584 (653)
T PTZ00009 579 ALEWLE 584 (653)
T ss_pred HHHHHh
Confidence 456764
No 63
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=26.59 E-value=3.5e+02 Score=23.79 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=15.8
Q ss_pred ccccccCCCCceEEEEecCC
Q 013834 218 ERAMFSLPPLMTLLLGEPGT 237 (435)
Q Consensus 218 ~~~~~~lp~~~~Lllgdtg~ 237 (435)
+-.+|..|...+.++.|.|.
T Consensus 44 kS~KFKfpRq~K~v~~d~g~ 63 (125)
T PF11944_consen 44 KSVKFKFPRQRKTVLVDSGS 63 (125)
T ss_pred hhcceeccCccceeeecCCC
Confidence 44578899988999998665
No 64
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=24.69 E-value=4.2e+02 Score=22.53 Aligned_cols=13 Identities=23% Similarity=0.465 Sum_probs=6.0
Q ss_pred HHHHHHhhhHHHH
Q 013834 262 ETWKKLSESNSAL 274 (435)
Q Consensus 262 ~~~~~L~~~n~~~ 274 (435)
.+|+.|...-..+
T Consensus 5 ~l~~~l~~le~~l 17 (107)
T PF06156_consen 5 ELFDRLDQLEQQL 17 (107)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555444443
No 65
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=22.75 E-value=7.2e+02 Score=25.96 Aligned_cols=52 Identities=15% Similarity=0.322 Sum_probs=32.0
Q ss_pred CceEEEEecCCCCCCcHHHHHHHHHHhhhCchhH-HHHHHHHhhhHHHHHHHHHHHH
Q 013834 227 LMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKS-QETWKKLSESNSALETQLNMLS 282 (435)
Q Consensus 227 ~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a-~~~~~~L~~~n~~~~~~L~~l~ 282 (435)
.-.|.+||++. ++.--.+.+ .+||++||+.. ......|.-.++| +.++--|.
T Consensus 173 HQtfFtCd~D~-~r~e~eIMQ--~AWRERnp~~RI~~A~~ALeIN~eC-A~AyvLLA 225 (556)
T KOG3807|consen 173 HQTFFTCDTDF-LRPEDEIMQ--KAWRERNPPARIKAAYQALEINNEC-ATAYVLLA 225 (556)
T ss_pred ccceeeccccc-cChHHHHHH--HHHHhcCcHHHHHHHHHHHhcCchh-hhHHHhhh
Confidence 35689999998 765555443 57999999652 3344556554444 34443333
No 66
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.08 E-value=5.3e+02 Score=22.37 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=47.3
Q ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCCCCHHHH
Q 013834 275 ETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIEPESQT 354 (435)
Q Consensus 275 ~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~Iepp~lt 354 (435)
..+|..+.+++.-+|+.-+.+++-|..+.. -++ .....+...+=+.+.-||.+=...++.++++.++
T Consensus 36 ~~al~y~~kFakldpe~a~e~veEL~~i~~----------~~e---~~avkIadI~P~t~~ElRsIla~e~~~~s~E~l~ 102 (114)
T COG1460 36 REALEYAEKFAKLDPEKARELVEELLSIVK----------MSE---KIAVKIADIMPRTPDELRSILAKERVMLSDEELD 102 (114)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcc----------ccH---HHHHHHHHhCCCCHHHHHHHHHHccCCCCHHHHH
Confidence 455666666665555555556665544211 011 1123556666666777777777778899999999
Q ss_pred HHHHHHHhc
Q 013834 355 QLLNATMDM 363 (435)
Q Consensus 355 ~Lld~a~~~ 363 (435)
+++|...++
T Consensus 103 ~Ildiv~Ky 111 (114)
T COG1460 103 KILDIVDKY 111 (114)
T ss_pred HHHHHHHHH
Confidence 999987653
No 67
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=21.02 E-value=2.3e+02 Score=21.55 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=23.2
Q ss_pred HHHHhccccCCCCCCCHHHHHHHHHHHhcCCceeeeecCCCcccee
Q 013834 335 YHMRLMGEAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAV 380 (435)
Q Consensus 335 ~lLr~lg~~sgv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~i 380 (435)
++-++++ ++|+.++.+++.-...+-+---..+++++++|.
T Consensus 19 eLa~~~~------~s~~~ve~mL~~l~~kG~I~~~~~~~~~~~~C~ 58 (69)
T PF09012_consen 19 ELAREFG------ISPEAVEAMLEQLIRKGYIRKVDMSSCCGGSCS 58 (69)
T ss_dssp HHHHHTT--------HHHHHHHHHHHHCCTSCEEEEEE--SSSSSS
T ss_pred HHHHHHC------cCHHHHHHHHHHHHHCCcEEEecCCCCCCCCCC
Confidence 5555554 589999999998887744433333333356664
No 68
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.96 E-value=5.1e+02 Score=28.53 Aligned_cols=10 Identities=20% Similarity=0.238 Sum_probs=4.6
Q ss_pred cHHHHHHHHH
Q 013834 242 TPSMVGAVKK 251 (435)
Q Consensus 242 T~~lV~~V~~ 251 (435)
|+.+++++.+
T Consensus 162 T~~~~~~~~~ 171 (555)
T TIGR03545 162 TVETAEEIEK 171 (555)
T ss_pred cHHHHHHHHH
Confidence 4444444443
Done!