Query 013834
Match_columns 435
No_of_seqs 268 out of 967
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 17:58:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013834.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013834hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k17_A LIN0012 protein; protei 100.0 4.4E-39 1.5E-43 327.4 25.5 242 110-414 113-357 (365)
2 3gon_A Phosphomevalonate kinas 100.0 2.1E-37 7.1E-42 307.6 22.0 223 111-405 101-325 (335)
3 2pg9_A Phosphomevalonate kinas 100.0 3.4E-33 1.2E-37 281.0 23.4 226 110-407 102-329 (337)
4 3k85_A D-glycero-D-manno-hepto 100.0 5.6E-29 1.9E-33 252.1 10.8 231 110-422 109-345 (357)
5 1kvk_A MK, mevalonate kinase; 100.0 1.9E-26 6.6E-31 235.8 27.9 233 111-428 140-392 (395)
6 4hac_A Mevalonate kinase; GHMP 100.0 2E-26 6.8E-31 230.1 26.4 214 110-416 108-321 (321)
7 2a2c_A N-acetylgalactosamine k 99.9 3.8E-24 1.3E-28 224.6 25.4 222 111-396 161-444 (478)
8 2hfs_A Mevalonate kinase, puta 99.9 7.1E-24 2.4E-28 211.2 23.0 201 111-398 109-311 (332)
9 1pie_A Galactokinase; galactos 99.9 4E-23 1.4E-27 213.0 23.7 234 111-416 153-416 (419)
10 2oi2_A Mevalonate kinase; enzy 99.9 4.2E-22 1.5E-26 194.3 21.2 196 110-401 85-284 (292)
11 2x7i_A Mevalonate kinase; tran 99.9 1.2E-22 4.1E-27 200.3 17.2 200 111-401 98-298 (308)
12 1kkh_A Mevalonate kinase; mixe 99.9 3.4E-22 1.2E-26 197.8 17.8 204 111-407 111-314 (317)
13 1wuu_A Galactokinase; galactos 99.9 9.1E-22 3.1E-26 201.5 21.1 233 111-416 143-397 (399)
14 2cz9_A Probable galactokinase; 99.9 1.4E-20 4.6E-25 188.4 25.3 229 111-414 99-349 (350)
15 3v2u_C Protein GAL3; rossmann 99.9 1.7E-20 5.9E-25 198.1 20.8 234 111-396 159-485 (520)
16 1h72_C HK, homoserine kinase; 99.8 4.7E-18 1.6E-22 166.2 19.1 205 111-415 88-295 (296)
17 3hul_A HSK, HK, homoserine kin 99.7 3E-16 1E-20 155.0 14.7 206 111-419 83-292 (298)
18 3pyf_A 4-diphosphocytidyl-2-C- 99.6 5E-15 1.7E-19 146.8 18.2 198 111-417 100-301 (306)
19 1uek_A 4-(cytidine 5'-diphosph 99.4 4.8E-13 1.6E-17 129.8 10.3 180 111-412 88-269 (275)
20 3qt5_A Mevalonate diphosphate 99.4 1.7E-11 5.8E-16 122.8 21.6 213 111-415 106-330 (332)
21 2gs8_A Mevalonate pyrophosphat 99.4 6E-11 2E-15 117.3 21.8 208 110-414 103-316 (317)
22 2v8p_A 4-diphosphocytidyl-2-C- 99.4 4.8E-12 1.7E-16 122.7 13.6 88 111-248 93-180 (271)
23 3lto_A Mevalonate diphosphate 99.1 2.7E-09 9.4E-14 106.4 20.5 187 111-397 104-305 (323)
24 2ww4_A 4-diphosphocytidyl-2C-m 99.1 4.2E-11 1.4E-15 117.1 6.5 87 111-248 101-187 (283)
25 1fi4_A Mevalonate 5-diphosphat 99.0 6.9E-09 2.4E-13 106.8 19.2 198 111-396 135-343 (416)
26 3f0n_A Mevalonate pyrophosphat 98.9 9.4E-09 3.2E-13 105.3 15.3 73 323-397 263-341 (414)
27 2hke_A Diphosphomevalonate dec 98.8 1.2E-07 4.3E-12 96.2 19.1 73 323-397 237-315 (380)
No 1
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=100.00 E-value=4.4e-39 Score=327.38 Aligned_cols=242 Identities=24% Similarity=0.329 Sum_probs=204.7
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCe-eeeecCh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQ-RYVRFSP 188 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~-~Y~rf~p 188 (435)
.|+|||||||++||++.||..+++ +++ ++++|+++|+.+|+.++| +|||+|+++++|||+ .|++|++
T Consensus 113 ~~~GLgSSaa~~va~~~al~~~~~-~~l----------~~~~l~~~a~~~E~~~~g-~~~g~D~~~~~~Gg~~~~~~~~~ 180 (365)
T 3k17_A 113 AKYGLGSSAAATVAVINALMTKFY-PEI----------SMLKKFKLAALSHLVVQG-NGSCGDIASCMYGGWIAYTTFDQ 180 (365)
T ss_dssp CBCSSCHHHHHHHHHHHHHHHHHC-TTS----------CHHHHHHHHHHHHHHHHS-SCCSHHHHHHHHCSEEEEECCCH
T ss_pred CCCcccHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHHHHHhCC-CCCcccHHHHhcCCEEEEecCCH
Confidence 589999999999999999999998 665 889999999999999999 999999999999998 8889999
Q ss_pred hhhhhhhhhhcCCchhhhhhhhccCCC-ccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHH
Q 013834 189 EVLSSAQVAVKETPLQEVITGILKGKW-DHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKL 267 (435)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~l~~l~~~~W-~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L 267 (435)
.++.+.... .. +..++..+| +..++++++|++ +|+|+||+. +++|++++++|.+|+..+|+....+++.+
T Consensus 181 ~~~~~~~~~---~~----l~~l~~~~w~~~~~~~l~~~~~-~lll~~t~~-~~sT~~~~~~v~~~~~~~~~~~~~~~~~~ 251 (365)
T 3k17_A 181 EWVKHRLAY---KS----LEWFMKEPWPMLQIETLEEPVP-TFSVGWTGT-PVSTGKLVSQIHAFKQEDSKNYQHFLTRN 251 (365)
T ss_dssp HHHHHHHTT---SC----HHHHHHSCCTTCEEEEECCCSS-EEEEEECSC-CCCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHhhhhccc---ch----hhhhhccCCCCcceeeccCCcc-cEEEEECCC-ccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 988765422 12 556667899 558899999988 999999999 99999999999999988886555544444
Q ss_pred hhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCC
Q 013834 268 SESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVP 347 (435)
Q Consensus 268 ~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~ 347 (435)
++... .++++|.. +| +..++++|+++|+.||.|++++|++
T Consensus 252 ~~~~~---------------------~~~~aL~~--------gd-----------~~~lg~lm~~~~~~l~~l~v~~~~~ 291 (365)
T 3k17_A 252 NEIMK---------------------QIIQAFHT--------KD-----------EELLYSSIKENRRILQELGTKAGVN 291 (365)
T ss_dssp HHHHH---------------------HHHHHHHH--------TC-----------HHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHH---------------------HHHHHHHh--------CC-----------HHHHHHHHHHHHHHHHHhhhhcCCc
Confidence 43322 23344443 33 3489999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC-hhHHHHHHHhCCceEEeeeeCCCCcE
Q 013834 348 IEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS-GSNVTKAWSSVNVLALLVREDPHGVS 414 (435)
Q Consensus 348 Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~~l~~~w~~~gv~~L~~~~~~~Gv~ 414 (435)
|++|++++|++.+++. |++ +|+||||||||+|+|+.++. .+++.++|++.|+.+++++++..|..
T Consensus 292 is~p~ld~l~~~a~~~-Ga~-ak~sGAGgGg~vial~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~ 357 (365)
T 3k17_A 292 IETSLLKELADSAENM-GGA-GKSSGSGGGDCGIAFSKTKELAEKLVNEWEKLGIKHLPFHTGRVQIT 357 (365)
T ss_dssp CSCHHHHHHHHHHHHT-TSE-EEECTTCSSSEEEEEESSHHHHHHHHHHHHHTTCEECCCCBCCCEEE
T ss_pred ccCHHHHHHHHHHHhc-CCE-EEecCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEecccccc
Confidence 9999999999999998 555 99999999999999987654 68899999999999999998876653
No 2
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=100.00 E-value=2.1e-37 Score=307.64 Aligned_cols=223 Identities=18% Similarity=0.234 Sum_probs=184.4
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCe-eeeecChh
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQ-RYVRFSPE 189 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~-~Y~rf~p~ 189 (435)
++|||||||++|+++.||..+++ +++ ++++++++|+.+|+.++| +|||+|+++|+||++ .|++|++.
T Consensus 101 ~~GLgSSaa~~va~~~al~~~~~-~~~----------~~~~l~~la~~~E~~~~g-~~sg~D~a~a~~Gg~i~~~~~~~~ 168 (335)
T 3gon_A 101 KFGLGSSGSVVVLVVKALLALYN-LSV----------DQNLLFKLTSAVLLKRGD-NGSMGDLACIAAEDLVLYQSFDRQ 168 (335)
T ss_dssp ECSSCHHHHHHHHHHHHHHHHTT-CCC----------CHHHHHHHHHHHHHHTTC-CSCSHHHHHHHHTSCEEEECCCHH
T ss_pred CCCcchHHHHHHHHHHhhhhccc-ccc----------hHHHHHHHHHHHHHHhcC-CCCCCCcceeecCCeEEEEeCCcc
Confidence 78999999999999999999998 665 899999999999999888 799999999999999 89999998
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHhh
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLSE 269 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~~ 269 (435)
.+...... ..+..++..+|...++++..|+.++|+++|++. +++|+.+|++|.+++.. ..+..+.+
T Consensus 169 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~t~~~v~~v~~~~~~------~~~~~~~~ 234 (335)
T 3gon_A 169 KVAAWLEE-------ENLATVLERDWGFSISQVKPTLECDFLVGWTKE-VAVSSHMVQQIKQNINQ------NFLTSSKE 234 (335)
T ss_dssp HHHHHHHH-------SCHHHHHHSCCCCEEEECCCCSCCEEEEEECCC-CCCHHHHHHHHGGGCCH------HHHHHHHH
T ss_pred ccceeecc-------cchhheecccccceeEEcCCccccceEEeecCC-hhhHHHHHHHHHHHhHH------HHHHHHHH
Confidence 77655432 125566678999999999999999999999999 99999999999765431 11222221
Q ss_pred hHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCCC
Q 013834 270 SNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIE 349 (435)
Q Consensus 270 ~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~Ie 349 (435)
. + ..++++|.. +| +..|+++|+++|.+||+|+. .|+
T Consensus 235 ~---~------------------~~~~~aL~~--------~d-----------~~~lg~lm~~~h~~l~~l~~----~is 270 (335)
T 3gon_A 235 T---V------------------VSLVEALEQ--------GK-----------SEKIIEQVEVASKLLEGLST----DIY 270 (335)
T ss_dssp H---H------------------HHHHHHHHH--------TC-----------HHHHHHHHHHHHHHHHHHCT----TTC
T ss_pred H---H------------------HHHHHHHHh--------Cc-----------HHHHHHHHHHHHHHHHhCCC----cCC
Confidence 1 1 123344433 33 34899999999999999975 799
Q ss_pred CHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC-hhHHHHHHHhCCceEEe
Q 013834 350 PESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS-GSNVTKAWSSVNVLALL 405 (435)
Q Consensus 350 pp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~~l~~~w~~~gv~~L~ 405 (435)
+|++++|++.+++.++ |||+||||||||+|+|+.+++ .+.|.++|++.||.++.
T Consensus 271 ~p~ld~l~~~a~~~g~--~akltGAG~Ggc~ial~~~~~~~~~i~~~~~~~Gi~~~y 325 (335)
T 3gon_A 271 TPLLRQLKEASQDLQA--VAKSSGAGGGDCGIALSFDAQSTKTLKNRWADLGIELLY 325 (335)
T ss_dssp CHHHHHHHHTTTTSSE--EEEECTTCSSSEEEEEECSHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHHhCCc--EEEEccccchheEEEEECCHHHHHHHHHHHHHCCCcEEe
Confidence 9999999999998854 899999999999999997655 68899999999999875
No 3
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=100.00 E-value=3.4e-33 Score=280.96 Aligned_cols=226 Identities=19% Similarity=0.250 Sum_probs=182.6
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCe-eeeecCh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQ-RYVRFSP 188 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~-~Y~rf~p 188 (435)
+|+|||||||++||++.||..+++ +++ ++++++++|+.+|. .+|+++||+|+++++|||+ .|++|++
T Consensus 102 ~k~GLgSSaa~~va~~~al~~~~~-~~l----------~~~~l~~la~~~E~-~~~~~~~~~D~~~~~~Gg~~~~~~~~~ 169 (337)
T 2pg9_A 102 KKFGLGSSGSVVVLVVKALLALYN-LSV----------DQNLLFKLTSAVLL-KRGDNGSMGDLACIAAEDLVLYQSFDR 169 (337)
T ss_dssp EECSSCHHHHHHHHHHHHHHHHTT-CCC----------CHHHHHHHHHHHHH-HTTCCSCSHHHHHHHHTSCEEEECCCH
T ss_pred CCccccHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHHHH-HhCCCCCHHHHHHHHhCCEEEEecCCh
Confidence 589999999999999999999998 665 88999999999995 4666999999999999999 7888998
Q ss_pred hhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHh
Q 013834 189 EVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLS 268 (435)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~ 268 (435)
.++.+++.. .+ +.++++.+|+..++++++|++++|+|+|++. +.+|+.+++.|.+++. .. .+.
T Consensus 170 ~~~~~~~~~---~~----~~~~l~~~~~~~~~~l~~~~~~~lvl~~~~~-~~~T~~~~~~~~~~~~------~~---~~~ 232 (337)
T 2pg9_A 170 QKVAAWLEE---EN----LATVLERDWGFSISQVKPTLECDFLVGWTKE-VAVSSHMVQQIKQNIN------QN---FLT 232 (337)
T ss_dssp HHHHHHHHH---SC----HHHHHHSCCCCEEEECCCCSCCEEEEEECCC-CCCHHHHHHHHGGGCC------HH---HHH
T ss_pred HHhhhhhcc---cc----hhhhcccccccceeeecCCCCceEEEEECCC-ccchHHHHHHHHHHHH------HH---HHH
Confidence 776655422 12 5667778997788999988899999999999 9999999999876543 11 222
Q ss_pred hhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCC
Q 013834 269 ESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPI 348 (435)
Q Consensus 269 ~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~I 348 (435)
+.+..+ ..++++|.. +| +..++++|+++|+.||.++. .|
T Consensus 233 ~~~~~~------------------~~~~~aL~~--------~d-----------~~~lg~~m~~~~~~l~~l~~----~v 271 (337)
T 2pg9_A 233 SSKETV------------------VSLVEALEQ--------GK-----------SEKIIEQVEVASKLLEGLST----DI 271 (337)
T ss_dssp HHHHHH------------------HHHHHHHHH--------TC-----------HHHHHHHHHHHHHHHHHHCT----TT
T ss_pred HHHHHH------------------HHHHHHHHc--------CC-----------HHHHHHHHHHHHHHHHHhcC----cC
Confidence 222111 123444443 33 34899999999999999974 57
Q ss_pred CCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC-hhHHHHHHHhCCceEEeee
Q 013834 349 EPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS-GSNVTKAWSSVNVLALLVR 407 (435)
Q Consensus 349 epp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~~l~~~w~~~gv~~L~~~ 407 (435)
++|++++|++.+++. |++ +|+||||||||+|+|+.++. .+++.++|++.|+.++...
T Consensus 272 ~~p~l~~l~~~a~~~-Ga~-ak~sGaGgGg~vial~~~~~~~~~~~~~l~~~g~~~~~~~ 329 (337)
T 2pg9_A 272 YTPLLRQLKEASQDL-QAV-AKSSGAGGGDCGIALSFDAQSTKTLKNRWADLGIELLYQE 329 (337)
T ss_dssp CCHHHHHHHHTTTTS-SEE-EEECTTCSSSEEEEEECSHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHC-CCE-EEEeCCCCccEEEEEECCHHHHHHHHHHHHHCCCEEEEEe
Confidence 999999999999887 888 99999999999999987654 6789999999999886544
No 4
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=5.6e-29 Score=252.15 Aligned_cols=231 Identities=17% Similarity=0.159 Sum_probs=149.0
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPE 189 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~ 189 (435)
.+.|||||||+++|++.||..+++ .++ +++++.++|+.+|...+|++++.+|+++++|||..+-.|.+.
T Consensus 109 ~g~GLgSSaa~~va~~~al~~~~~-~~l----------~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~Gg~~~~~~~~~ 177 (357)
T 3k85_A 109 AGSGLGTSSTMVVCILKAFIEWLS-LPL----------GDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNYMEFLQN 177 (357)
T ss_dssp SSSSSCHHHHHHHHHHHHHHHHHT-CCC----------CHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHCSEEEEEEETT
T ss_pred CCCCchHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHHHHHHccCCCcHHHHHHHHhCCceEEEEeCC
Confidence 379999999999999999999998 665 889999999999999999544447999999999965545321
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCC------ceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHH
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPL------MTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQET 263 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~------~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~ 263 (435)
+...++++++|+. +.|+++|++. +++|..++.++.......++...+.
T Consensus 178 -------------------------~~~~~~~l~~~~~~~~~l~~~lvi~~t~~-~~~a~~~l~~~~~~~~~~~~~~~~~ 231 (357)
T 3k85_A 178 -------------------------DLVIVNPLKMKRWIVDELESSMVLYFTGR-SRSSAAIINEQKKNTSEGNQTAIEA 231 (357)
T ss_dssp -------------------------TEEEEEEECCCHHHHHHHHHTEEEECC----------------------CCTTHH
T ss_pred -------------------------CceeEEEEecChhhhhhcCceEEEEECCC-cccHHHHHHHHHHHhhcCcHHHHHH
Confidence 0113455666653 6899999999 9999999988765433333222222
Q ss_pred HHHHhhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhcccc
Q 013834 264 WKKLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEA 343 (435)
Q Consensus 264 ~~~L~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~ 343 (435)
+..+.+. + .+++++|.+ +| +..++++|++++..++.+..
T Consensus 232 ~~~i~~~---~------------------~~~~~aL~~--------~d-----------~~~lg~lm~~~~~~l~~~~~- 270 (357)
T 3k85_A 232 MHKIKQS---A------------------IDTKLALLK--------GD-----------VGEFARILGEGWENKKKMAG- 270 (357)
T ss_dssp HHHHHHH---H------------------HHHHHHHTT--------TC-----------HHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHH---H------------------HHHHHHHHc--------CC-----------HHHHHHHHHHHHHHHHhcCC-
Confidence 2222111 1 223455543 33 34899999999999998732
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCChhHHHHHHHhCCceEEeeeeCCCCcEEEecCcch
Q 013834 344 AGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVTKAWSSVNVLALLVREDPHGVSLESCDPRT 422 (435)
Q Consensus 344 sgv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~~~~l~~~w~~~gv~~L~~~~~~~Gv~~e~~~~~~ 422 (435)
.|++|++++|++.+.+. |++|+|++|||||||+++|+.++..+++.++|++.|..++.++.+.+|++++....+.
T Consensus 271 ---~vs~p~ld~l~~~a~~~-Ga~GaklsGaG~gG~vial~~~~~~~~~~~~l~~~g~~~~~~~~~~~G~~v~~~~~~~ 345 (357)
T 3k85_A 271 ---AITNPMIQEAFDVATGA-GAMAGKVSGAGGGGFIMFVVEPTRKEEVVRALNNLNGFVMPFQFIDDGAHGWKIYSTD 345 (357)
T ss_dssp -----------CCSCTTTTS-CCSEEEECCCC---CEEEECCHHHHHHHHHHHHTSSSCBCCCCBCCCCCEEEECCC--
T ss_pred ---CCCCHHHHHHHHHHHhc-CCeEeEecccCCCCEEEEEecHHHHHHHHHHHHHCCCeEEEeEEcCCceEEEEecCch
Confidence 57899999999999887 8999999999999999999865447888999999999999999999999998875443
No 5
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=99.95 E-value=1.9e-26 Score=235.84 Aligned_cols=233 Identities=21% Similarity=0.213 Sum_probs=173.4
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccc-----cCCCccccCCCCC-------H---HHHHHHHHHHHHHHcCCCCCccchhh
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIV-----NLSSSIDQQHDGD-------L---DMVHMIAQSAHCIAQGKIGSGFDVSS 175 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~-----~l~~~~~~~~~~~-------~---~~i~~LAq~Ah~~aQGk~GSG~Dvaa 175 (435)
+.|||||||+++|++.||..+++ . ++ + + ..|.++|+.+|+.++| .+||.|+++
T Consensus 140 g~GLGSSaA~~va~~~al~~l~~-~~~~~~~l----------~~~~~~~~~~~l~~l~~~A~~~E~~~~G-~~sG~D~~~ 207 (395)
T 1kvk_A 140 GAGLGSSAAYSVCVAAALLTACE-EVTNPLKD----------RGSIGSWPEEDLKSINKWAYEGERVIHG-NPSGVDNSV 207 (395)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHTT-SSCCGGGG----------CCSEECCCHHHHHHHHHHHHHHHHHHHS-SCCSHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHhC-cccccccc----------cccccccchhhHHHHHHHHHHhhheEec-CCCCcchHH
Confidence 78999999999999999999998 5 33 3 4 5677778889999999 789999999
Q ss_pred eeeCCeeeeecChhhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhh
Q 013834 176 AVYGSQRYVRFSPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKS 255 (435)
Q Consensus 176 AvyGg~~Y~rf~p~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~ 255 (435)
++||+.++ |.+. .++++++|+++++++++++. +.+|+.+++.+..++..
T Consensus 208 ~~~Gg~~~--~~~~----------------------------~~~~l~~~~~~~~vl~~~~~-~~~T~~~~~~~~~~~~~ 256 (395)
T 1kvk_A 208 STWGGALR--YQQG----------------------------KMSSLKRLPALQILLTNTKV-PRSTKALVAGVRSRLIK 256 (395)
T ss_dssp HHHCSEEE--ESSS----------------------------CEEECSCCCCEEEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred hhhcceEE--EcCC----------------------------CceeccCCCCcEEEEEECCC-CCchHHHHHHHHHHHHH
Confidence 99999954 2221 23455666789999999999 99999999998876655
Q ss_pred CchhHHHHHHHHhhhHHHHHHHHHHHHhHHHHhHHHHHHHHHH-HhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHH
Q 013834 256 DPQKSQETWKKLSESNSALETQLNMLSKLAEEHWNAYKQVIES-CSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIR 334 (435)
Q Consensus 256 ~pe~a~~~~~~L~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~a-l~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r 334 (435)
.|+....+++.+........ +.+.. ...+.. ..+..++++|+++|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~------------------~~l~~~~~al~~----------------~d~~~lg~lm~~~~ 302 (395)
T 1kvk_A 257 FPEIMAPLLTSIDAISLECE------------------RVLGEMAAAPVP----------------EQYLVLEELMDMNQ 302 (395)
T ss_dssp SHHHHHHHHHHHHHHHHHHH------------------HHHHHHTTCCCH----------------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH------------------HHHHhhhccccH----------------HHHHHHHHHHHHHH
Confidence 55433333333322211111 11111 111111 11348999999999
Q ss_pred HHHHhccccCCCCCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC----hhHHHHHHHhCCceEEeeeeCC
Q 013834 335 YHMRLMGEAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS----GSNVTKAWSSVNVLALLVREDP 410 (435)
Q Consensus 335 ~lLr~lg~~sgv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~----~~~l~~~w~~~gv~~L~~~~~~ 410 (435)
..|+.++ +++|++++|++.+++. |+ |+|++|||||||+++|+.++. .+.+.+.|++.|+..+.++...
T Consensus 303 ~~l~~~~------~~~p~l~~l~~~a~~~-Ga-ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 374 (395)
T 1kvk_A 303 HHLNALG------VGHASLDQLCQVTAAH-GL-HSKLTGAGGGGCGITLLKPGLERAKVEAAKQALTGCGFDCWETSIGA 374 (395)
T ss_dssp HHHHHHT------CCCHHHHHHHHHHHHT-TC-EEEECSSCSSSEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEESC
T ss_pred HHHHHcC------CCCHHHHHHHHHHHHc-CC-ceeeccCCCCCEEEEEecCCCCHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 9999853 5899999999999988 88 999999999999999987653 3456778999998888888888
Q ss_pred CCcEEEecCcchhhHHHh
Q 013834 411 HGVSLESCDPRTTEITSA 428 (435)
Q Consensus 411 ~Gv~~e~~~~~~~~~~~~ 428 (435)
.|++++...+..+...++
T Consensus 375 ~G~~v~~~~~~~~~~~~~ 392 (395)
T 1kvk_A 375 PGVSMHSATSIEDPVRQA 392 (395)
T ss_dssp CCSEEECTTTSCHHHHHH
T ss_pred CcEEEEeccccchhhhhh
Confidence 999999876655444444
No 6
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.95 E-value=2e-26 Score=230.06 Aligned_cols=214 Identities=21% Similarity=0.265 Sum_probs=171.1
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPE 189 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~ 189 (435)
.+.|||||||+++|++.|+..+++ .++ +++++.++|+.++..++|+ ||+.|+++++||+.++. .+.
T Consensus 108 ~g~GLGSSsa~~va~~~al~~l~~-~~l----------~~~~l~~la~~~e~~~~g~-~~~~D~~~~~~Gg~~~~-~~~- 173 (321)
T 4hac_A 108 VGSGLGSSAAVTIASIGALNELFG-FGL----------SLQEIAKLGHEIEIKVQGA-ASPTDTYVSTFGGVVTI-PER- 173 (321)
T ss_dssp SCTTCCHHHHHHHHHHHHHHHHHT-CCC----------CHHHHHHHHHHHHHHHHSC-CCSHHHHHHHHCSEEEE-TTC-
T ss_pred CCCCccHHHHHHHHHHHHHHHHhc-CCC----------CHHHHHHHHHHHHHHhcCC-CcHHHHHHHHcCCeEEE-cCC-
Confidence 378999999999999999999998 665 8899999999999999995 99999999999998443 211
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHhh
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLSE 269 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~~ 269 (435)
+++.+| ++++++++++. +.+|+.+++.|...++..|+....+++.+.+
T Consensus 174 ------------------------------~~l~~p-~~~~vlv~p~~-~~sT~~~~~~~~~l~~~~~~~~~~~~~~~~~ 221 (321)
T 4hac_A 174 ------------------------------RKLKTP-DCGIVIGDTGV-FSSTKELVANVRQLRESYPDLIEPLMTSIGK 221 (321)
T ss_dssp ------------------------------CEECCC-CCEEEEEECCC-CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ------------------------------ceeccC-CCEEEEEECCC-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 122345 68999999999 9999999998887776666433333333322
Q ss_pred hHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCCC
Q 013834 270 SNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIE 349 (435)
Q Consensus 270 ~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~Ie 349 (435)
.. ..++++|.+ +| +..++++|+.+|.+++.++ ++
T Consensus 222 ~~---------------------~~~~~al~~--------~d-----------~~~lg~~~~~~~~~~~~~~------v~ 255 (321)
T 4hac_A 222 IS---------------------RIGEQLVLS--------GD-----------YASIGRLMNVNQGLLDALG------VN 255 (321)
T ss_dssp HH---------------------HHHHHHHHH--------TC-----------HHHHHHHHHHHHHHHHHHT------CC
T ss_pred HH---------------------HHHHHHHHh--------CC-----------HHHHHHHHHHHHHHHhhcC------CC
Confidence 11 123344443 33 3389999999999888775 58
Q ss_pred CHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCChhHHHHHHHhCCceEEeeeeCCCCcEEE
Q 013834 350 PESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVTKAWSSVNVLALLVREDPHGVSLE 416 (435)
Q Consensus 350 pp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~~~~l~~~w~~~gv~~L~~~~~~~Gv~~e 416 (435)
+|+++++++.+++. |++|+|++|||+|||+|+|+..+..+++.+.|++.+..++.++.+..|+++|
T Consensus 256 ~p~l~~l~~~a~~~-Ga~ga~~SGaG~GG~v~al~~~~~a~~~~~~l~~~g~~v~~~~~~~~G~~v~ 321 (321)
T 4hac_A 256 ILELSQLIYSARAA-GAFGAKITGAGGGGCMVALTAPEKCNQVAEAVAGAGGKVTITKPTEQGLKVD 321 (321)
T ss_dssp CHHHHHHHHHHHHT-TCSEEEECSSCSSSEEEEEECSTTHHHHHHHHHHTTCEEEEECBCSCSSEEC
T ss_pred CHHHHHHHHHHHHC-CCCEEEECccCCCCEEEEEcCHHHHHHHHHHHHhCCCeEEEEEECCCceecC
Confidence 99999999999987 8999999999999999999843347889999999999999999999999986
No 7
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=99.93 E-value=3.8e-24 Score=224.59 Aligned_cols=222 Identities=19% Similarity=0.183 Sum_probs=153.2
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeC---CeeeeecC
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYG---SQRYVRFS 187 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyG---g~~Y~rf~ 187 (435)
+.|||||||++||++.|++.+++ .++ +++++.++|+.+|.. .|.++|++|+++++|| +..|..|.
T Consensus 161 g~GLgSSAA~~va~~~al~~~~~-~~l----------s~~~l~~la~~~E~~-~g~~~g~~D~~a~~~G~~g~~~~i~f~ 228 (478)
T 2a2c_A 161 SSGLSSSSALVCCAGLVTLTVLG-RNL----------SKVELAEICAKSERY-IGTEGGGMDQSISFLAEEGTAKLIEFS 228 (478)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHT-CCC----------CHHHHHHHHHHHHGG-GTCCCCSHHHHHHHHCBTTBEEEEETT
T ss_pred CCCchHHHHHHHHHHHHHHHHcC-CCC----------CHHHHHHHHHHHHhh-cCCCCccHHHHHHHhccCCcEEEEEcC
Confidence 89999999999999999999998 655 889999999999975 6669999999999998 66888886
Q ss_pred hhhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcH------------------------
Q 013834 188 PEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTP------------------------ 243 (435)
Q Consensus 188 p~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~------------------------ 243 (435)
|. +.+++++|+++.|+++|++. +.+|.
T Consensus 229 ~~----------------------------~~~~~~~~~~~~~vi~~s~~-~~~t~~t~~yn~r~~e~~~A~~~L~~~~~ 279 (478)
T 2a2c_A 229 PL----------------------------RATDVKLPSGAVFVIANSCV-EMNKAATSHFNIRVMECRLAAKLLAKYKS 279 (478)
T ss_dssp TT----------------------------EEEEECCCTTEEEEEEECCC-CCCGGGSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CC----------------------------ceEEecCCCCcEEEEEeCCC-cccccccchhHHHHHHHHHHHHHHHhhhc
Confidence 51 23467788889999999999 88764
Q ss_pred ---------------------HHHHHHHHHhhhCchhHHHHHHHHhhhHHHHHHH--------------HHHHHhHHHHh
Q 013834 244 ---------------------SMVGAVKKWQKSDPQKSQETWKKLSESNSALETQ--------------LNMLSKLAEEH 288 (435)
Q Consensus 244 ---------------------~lV~~V~~wr~~~pe~a~~~~~~L~~~n~~~~~~--------------L~~l~~l~~~~ 288 (435)
.||+.|.+|...++....++.+.|+..-+.+.+. .++......+.
T Consensus 280 ~~~~~~~~l~d~~~~~~~~~~~~v~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ra~h~~~e~ 359 (478)
T 2a2c_A 280 LQWDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQDVLIFKLYQRAKHVYSEA 359 (478)
T ss_dssp CCTTTCCCHHHHHHHHTCCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGGGTTCCCBCHHHHHHHHHHHH
T ss_pred ccccccchHHhhhhhhcccHHHHHHHHHHhcccccccHHHHHHHhCccHHHHHhhccccccccchhHHHHHHHHHHHHHH
Confidence 2455555555444322223333332211111110 00000011111
Q ss_pred HHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHhcCCcee
Q 013834 289 WNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIEPESQTQLLNATMDMEGVLL 368 (435)
Q Consensus 289 ~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~Iepp~lt~Lld~a~~~~Gvlg 368 (435)
.. ...++++|.+.... .+..|+++|+++|..+|.++ .+++|++++|++.|++. |++|
T Consensus 360 ~r-v~~~~~aL~~~~~~----------------d~~~lg~lm~~sh~slr~l~-----~vs~peld~l~~~a~~~-Ga~G 416 (478)
T 2a2c_A 360 AR-VLQFKKICEEAPEN----------------MVQLLGELMNQSHMSCRDMY-----ECSCPELDQLVDICRKF-GAQG 416 (478)
T ss_dssp HH-HHHHHHHHHHCCTT----------------HHHHHHHHHHHHHHHHHHTS-----CCCCHHHHHHHHHHHHT-TCSE
T ss_pred HH-HHHHHHHHHhcccc----------------HHHHHHHHHHHHHHHHHhcc-----cCCCHHHHHHHHHHHhC-CCcE
Confidence 00 01122233210001 14489999999999999998 37899999999999886 9999
Q ss_pred eeecCCCccceeEEEecCCChhHHHHHH
Q 013834 369 AGVPGAGGFDAVFAVTLGDSGSNVTKAW 396 (435)
Q Consensus 369 akv~GAGGGD~iiaL~~~~~~~~l~~~w 396 (435)
+|++|||||||+++|+.++..+.+.++|
T Consensus 417 arltGAG~GG~viaLv~~~~~~~~~~~l 444 (478)
T 2a2c_A 417 SRLTGAGWGGCTVSMVPADKLPSFLANV 444 (478)
T ss_dssp EEECTTCSSSEEEEEEEGGGHHHHHHHH
T ss_pred EEeccCCCccEEEEEEcHHHHHHHHHHH
Confidence 9999999999999999865444444443
No 8
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.92 E-value=7.1e-24 Score=211.16 Aligned_cols=201 Identities=20% Similarity=0.226 Sum_probs=152.4
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCe-eeeecChh
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQ-RYVRFSPE 189 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~-~Y~rf~p~ 189 (435)
+.|||||||+++|++.||..+++ .++ +++++.++|+.+|..++| .+||.|+++++||++ .|++....
T Consensus 109 g~GLGSSsA~~~a~~~al~~l~~-~~l----------~~~~l~~~a~~~E~~~~G-~~~G~D~~~~~~Gg~~~~~~~~g~ 176 (332)
T 2hfs_A 109 SSGIGASASDVVAFSRALSELYQ-LNL----------TDEEVNLSAFVGEGGYHG-TPSGADNTAATYGGLILYRRQNGK 176 (332)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHT-CCC----------CHHHHHHHHHHHGGGSSS-CCCSHHHHHHHHCEEEEEEECSSS
T ss_pred CCCccHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHHHHHhcC-CCCcHhHHHHhcCCeEEEecCCCC
Confidence 78999999999999999999998 665 889999999999999999 689999999999999 44332210
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHhh
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLSE 269 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~~ 269 (435)
| .++++++|+++++++.+++. +.+|..++.++...+..+++....+++.+..
T Consensus 177 -------------------------~--~~~~~~~~~~~~~vl~~~~~-~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (332)
T 2hfs_A 177 -------------------------S--VFKPIAFQQRLYLVVVGTGI-NASTAKVVNDVHKMKQQQPVQFKRLYDNYTH 228 (332)
T ss_dssp -------------------------E--EEEEECCCSCEEEEEEECSC-CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred -------------------------c--ceeeecCCCCcEEEEEECCC-CccHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 1 24566677789999999999 9999999988876655554332222222211
Q ss_pred hHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCCC
Q 013834 270 SNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIE 349 (435)
Q Consensus 270 ~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~Ie 349 (435)
.. ..+++++.. +| +..++++|+++|.+++.++ ++
T Consensus 229 ~~---------------------~~~~~al~~--------~d-----------~~~l~~~~~~~~~~l~~~~------~~ 262 (332)
T 2hfs_A 229 IV---------------------SQAREALQK--------GD-----------LQRLGQLMNANHDLCRQID------VS 262 (332)
T ss_dssp HH---------------------HHHHHHHHH--------TC-----------HHHHHHHHHHHHHHHHHTT------CC
T ss_pred HH---------------------HHHHHHHHc--------CC-----------HHHHHHHHHHHHHHHHHcC------CC
Confidence 11 123344433 23 3378999999999999874 37
Q ss_pred CHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC-hhHHHHHHHh
Q 013834 350 PESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS-GSNVTKAWSS 398 (435)
Q Consensus 350 pp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~~l~~~w~~ 398 (435)
+|+++++++.+.+. |++|+|++|||+|||+++|+.++. .+.+.+.+++
T Consensus 263 ~p~l~~l~~~~~~~-Ga~ga~~sGaG~gg~v~~l~~~~~~a~~~~~~l~~ 311 (332)
T 2hfs_A 263 CRELESIVQTCRTY-GALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKA 311 (332)
T ss_dssp CHHHHHHHHHHHHT-TCSEEEEESSCSSSEEEEEESSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CCceEEeccCCCCcEEEEEecCcccHHHHHHHHHH
Confidence 99999999999886 889999999999999999987553 3556655543
No 9
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=99.91 E-value=4e-23 Score=212.99 Aligned_cols=234 Identities=14% Similarity=0.086 Sum_probs=151.5
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCc-cchhheeeCC---eeeeec
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSG-FDVSSAVYGS---QRYVRF 186 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG-~DvaaAvyGg---~~Y~rf 186 (435)
+.|||||||+++|++.||..+++ .++ ++++|.++|+.+|+.++| .+|| +|+++++||+ ..+.++
T Consensus 153 gaGLGSSaA~~vA~~~al~~l~g-~~l----------s~~el~~la~~~E~~~~G-~~~G~~D~~~~~~Gg~~~~~~~d~ 220 (419)
T 1pie_A 153 ASGLSSSASLELLVGVVLDDLFN-LNV----------PRLELVQLGQKTENDYIG-VNSGILDQFAIGFGEVKKAIELDC 220 (419)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHTT-CCC----------CHHHHHHHHHHHHHHTTC-CCCCSHHHHHHHHCBTTEEEEEET
T ss_pred CCChhHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHHHHHhcC-CCccchhHHHHHhccCCeEEEeec
Confidence 89999999999999999999998 665 889999999999999999 5666 6999999998 344443
Q ss_pred ChhhhhhhhhhhcCCchhhhhhhhccCCCccccccccCC-CCceEEEEecCCCCCCcHH-----------HHHHHHH---
Q 013834 187 SPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLP-PLMTLLLGEPGTGGSSTPS-----------MVGAVKK--- 251 (435)
Q Consensus 187 ~p~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp-~~~~Lllgdtg~~~s~T~~-----------lV~~V~~--- 251 (435)
.+. .++++++| +++++++++++. +.+|+. .+.++++
T Consensus 221 ~~~----------------------------~~~~l~~~~~~~~~vl~~~~~-~~~t~~~~y~~r~~~~~~a~~~l~~~~ 271 (419)
T 1pie_A 221 NTL----------------------------KYEMVPVELRDYDIVIMNTNK-PRALTESKYNERFAETREALKRMQTRL 271 (419)
T ss_dssp TTC----------------------------CEEEEECCCTTEEEEEEECCC-CCCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCC----------------------------ceEEeecCCCCcEEEEEECCC-ccccccchHHHHHHHHHHHHHHHhhcc
Confidence 321 23466666 589999999999 888863 1111111
Q ss_pred ----HhhhCchhHHHHHHHHhhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHH
Q 013834 252 ----WQKSDPQKSQETWKKLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGAR 327 (435)
Q Consensus 252 ----wr~~~pe~a~~~~~~L~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~ 327 (435)
++...|+...++.+.|. .+.. .++......+.. ....++++|.+ +| +..++
T Consensus 272 ~v~~l~~~~~~~~~~~~~~l~--~~~~---~~~~~~~v~e~~-r~~~~~~al~~--------~d-----------~~~lg 326 (419)
T 1pie_A 272 DIQSLGELSNEEFDANTDLIG--DETL---IKRARHAVYENN-RTKIAQKAFVA--------GN-----------LTKFG 326 (419)
T ss_dssp CCSSGGGCCHHHHHHTGGGTC--CHHH---HHHHHHHHHHHH-HHHHHHHHHHH--------TC-----------HHHHH
T ss_pred ccCchhhCCHHHHHHHHhhcC--cHHH---HHHHHHHHHHHH-HHHHHHHHHHc--------CC-----------HHHHH
Confidence 11111111100000000 0000 000000000000 01223344433 33 34899
Q ss_pred HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCChhHHHH----HHHhC-Cc-
Q 013834 328 DAMLGIRYHMRLMGEAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVTK----AWSSV-NV- 401 (435)
Q Consensus 328 ~~i~~~r~lLr~lg~~sgv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~~~~l~~----~w~~~-gv- 401 (435)
++|+++|..|+.+- .+++|++++|++.+++.+|++|+|++|||||||+++|+.++..+.+.+ .|.+. |+
T Consensus 327 ~lm~~~~~~l~~~~-----~~~~p~l~~l~~~a~~~~Ga~ga~lsGaG~Gg~v~al~~~~~a~~~~~~l~~~~~~~~g~~ 401 (419)
T 1pie_A 327 ELLNASHASLKDDY-----EVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEEVVGYP 401 (419)
T ss_dssp HHHHHHHHHHHHTS-----CCCCHHHHHHHHHHHHSTTEEEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHhcCCCceeeEecCCCCeEEEEEEchhhHHHHHHHHHHHHHHhcCCC
Confidence 99999999999843 358999999999999877999999999999999999997654444444 45432 33
Q ss_pred -eEEeeeeCCCCcEEE
Q 013834 402 -LALLVREDPHGVSLE 416 (435)
Q Consensus 402 -~~L~~~~~~~Gv~~e 416 (435)
..+.++. ..|+++.
T Consensus 402 ~~~~~~~~-~~Ga~v~ 416 (419)
T 1pie_A 402 ASFYVAQI-GSGSTKL 416 (419)
T ss_dssp CEEEECCB-CCCSBCC
T ss_pred CeEEEEcC-CCCeeec
Confidence 3444443 4688765
No 10
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.89 E-value=4.2e-22 Score=194.29 Aligned_cols=196 Identities=20% Similarity=0.307 Sum_probs=146.4
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCe-eeeecCh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQ-RYVRFSP 188 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~-~Y~rf~p 188 (435)
.+.|||||||+++|++.||..+++ .++ +++++.++|+.+|...+| ++||+|+++++||+. .|.+..
T Consensus 85 ~g~GLGSSsa~~~a~~~al~~~~~-~~l----------~~~~l~~la~~~E~~~~~-~p~g~d~~~~~~gg~~~~~~~~- 151 (292)
T 2oi2_A 85 EKRGMGSSAAISIAAIRAVFDYYQ-ADL----------PHDVLEILVNRAEMIAHM-NPSGLDAKTCLSDQPIRFIKNV- 151 (292)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHT-CCC----------CHHHHHHHHHHHHHHTTC-CCCSHHHHHHTCSSCEEEETTT-
T ss_pred CCCCchHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHHHHHhcC-CCCchhHHHHhcCceEEEEcCC-
Confidence 389999999999999999999998 665 889999999999987788 799999999999998 443211
Q ss_pred hhhhhhhhhhcCCchhhhhhhhccCCCccccccc--cCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHH
Q 013834 189 EVLSSAQVAVKETPLQEVITGILKGKWDHERAMF--SLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKK 266 (435)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~--~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~ 266 (435)
.++++ ++| .+ +++.|++. +.+|+.+++.+.+... .....++.
T Consensus 152 -----------------------------~~~~~~~~~~-~~-~~i~~~~~-~~sT~~~~~~l~~~~~----~~~~~~~~ 195 (292)
T 2oi2_A 152 -----------------------------GFTELEMDLS-AY-LVIADTGV-YGHTREAIQVVQNKGK----DALPFLHA 195 (292)
T ss_dssp -----------------------------EEEECCCCCS-CE-EEEEECSS-CCCHHHHHHHHHHTGG----GGHHHHHH
T ss_pred -----------------------------CceeecCCCC-CE-EEEEECCC-CCcHHHHHHHHHHHHh----hhHHHHHH
Confidence 11222 333 34 99999999 9999998876654221 10111112
Q ss_pred HhhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCC
Q 013834 267 LSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGV 346 (435)
Q Consensus 267 L~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv 346 (435)
+.+.. ..+++++.+ +| +..++++|+++|..|+.++
T Consensus 196 ~~~~~---------------------~~~~~al~~--------~d-----------~~~l~~~~~~~~~~l~~~~----- 230 (292)
T 2oi2_A 196 LGELT---------------------QQAEIAISQ--------KD-----------AEGLGQILSQAHLHLKEIG----- 230 (292)
T ss_dssp HHHHH---------------------HHHHHHHHT--------TC-----------HHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHH---------------------HHHHHHHHc--------CC-----------HHHHHHHHHHHHHHHHhcC-----
Confidence 21111 122344433 23 3378999999999999864
Q ss_pred CCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC-hhHHHHHHHhCCc
Q 013834 347 PIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS-GSNVTKAWSSVNV 401 (435)
Q Consensus 347 ~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~~l~~~w~~~gv 401 (435)
+.+|+++++++.+++. |++|+|++|||+|||+++|+.+++ .+.+.+.|++.+.
T Consensus 231 -~~~p~l~~l~~~~~~~-Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~l~~~~~ 284 (292)
T 2oi2_A 231 -VSSLEADSLVETALSH-GALGAKMSGGGLGGCIIALVTNLTHAQELAERLEEKGA 284 (292)
T ss_dssp -CCCHHHHHHHHHHHTT-TCSEEEEESSSSSSEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred -CCcHHHHHHHHHHHhC-CCceeeeccCCCCcEEEEEecCchHHHHHHHHHHhcCc
Confidence 5899999999999886 889999999999999999987633 6778888988775
No 11
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.89 E-value=1.2e-22 Score=200.25 Aligned_cols=200 Identities=20% Similarity=0.236 Sum_probs=146.0
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChhh
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPEV 190 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~~ 190 (435)
+.|||||||+++|++.||..+++ .++ +++++.++|+.+|..++| .+||.|++++.||+.++.....
T Consensus 98 g~GLGSSsa~~~a~~~al~~l~~-~~l----------~~~~l~~la~~~E~~~~g-~~sG~d~~~~~~g~~~~~~~g~-- 163 (308)
T 2x7i_A 98 SRGLGSSAAVAVAFVRASYDFLG-KSL----------TKEELIEKANWAEQIAHG-KPSGIDTQTIVSGKPVWFQKGH-- 163 (308)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHT-CCC----------CHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHTSCEEEETTE--
T ss_pred CCCccHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHHHHHHCC-CCchHHHHHhhCCceEEEEcCC--
Confidence 78999999999999999999998 665 889999999999999999 7999999999999984322110
Q ss_pred hhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHhhh
Q 013834 191 LSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLSES 270 (435)
Q Consensus 191 l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~~~ 270 (435)
.++++++|+.+.+++.|++. +.+|+.+++.+.+.....++. . + +...
T Consensus 164 ---------------------------~~~~~~~~~~~~~vi~~~~~-~~sT~~~~~~l~~~~~~~~~~-~---~-~~~~ 210 (308)
T 2x7i_A 164 ---------------------------AETLKTLSLDGYMVVIDTGV-KGSTRQAVHDVHKLCEDPQYM-S---H-VKHI 210 (308)
T ss_dssp ---------------------------EEECSCCCBSSEEEEEECCC---CCSCCCC--------CCHH-H---H-HHHH
T ss_pred ---------------------------CceEeccCCCceEEEEECcC-CCCHHHHHHHHHHHHhcCchH-H---H-HHHH
Confidence 13345556678999999999 999998887766543333311 0 1 1111
Q ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCCCC
Q 013834 271 NSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIEP 350 (435)
Q Consensus 271 n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~Iep 350 (435)
...+ .++++++.+ +| +..++++|+.+|..+++++ +++
T Consensus 211 ~~~~------------------~~~~~al~~--------~d-----------~~~l~~~~~~~~~~~~~~~------~~~ 247 (308)
T 2x7i_A 211 GKLV------------------LRASDVIEH--------HK-----------FEALADIFNECHADLKALT------VSH 247 (308)
T ss_dssp HHHH------------------HHHHHHHHT--------TC-----------HHHHHHHHHHHHHHHHHHS------CCC
T ss_pred HHHH------------------HHHHHHHHc--------CC-----------HHHHHHHHHHHHHHHHHhC------CCC
Confidence 1100 123344443 23 3378999999999999974 579
Q ss_pred HHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC-hhHHHHHHHhCCc
Q 013834 351 ESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS-GSNVTKAWSSVNV 401 (435)
Q Consensus 351 p~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~~l~~~w~~~gv 401 (435)
|+++++++.+++. |++|+|++|||+|||+++|+.+++ .+++.+.|++.+.
T Consensus 248 p~l~~l~~~~~~~-Ga~ga~~sGaG~GG~v~~l~~~~~~~~~~~~~l~~~~~ 298 (308)
T 2x7i_A 248 DKIEQLMKIGKEN-GAIAGKLTGAGRGGSMLLLAKDLPTAKNIVKAVEKAGA 298 (308)
T ss_dssp HHHHHHHHHHHHT-TCSEEEESBTTTCSSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHC-CCcEEEeeccCCCcEEEEEeCChhHHHHHHHHHHhCCC
Confidence 9999999999886 889999999999999999987633 6778889988773
No 12
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.88 E-value=3.4e-22 Score=197.78 Aligned_cols=204 Identities=19% Similarity=0.217 Sum_probs=148.5
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChhh
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPEV 190 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~~ 190 (435)
+.|||||||+++|++.||..+++ .++ +++++.++|+.+|..++| .+||.|+++++|||+.+.+ +..
T Consensus 111 ~~GLGsSsa~~~a~~~al~~l~~-~~l----------~~~~l~~~a~~~E~~~~g-~~sg~D~~~~~~Gg~~~~~--~~~ 176 (317)
T 1kkh_A 111 SCGLGSSASITIGTIKAVSGFYN-KEL----------KDDEIAKLGYMVEKEIQG-KASITDTSTITYKGILEIK--NNK 176 (317)
T ss_dssp SSSSCHHHHHHHHHHHHHHHTTT-CCC----------CHHHHHHHHHHHHHHHSS-SCCSHHHHHHHHCSEEEES--SSC
T ss_pred CCCchHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHHHHHhcC-CCchHHHHHHHhCCeEEEc--CCC
Confidence 89999999999999999999998 665 889999999999999999 5899999999999994333 111
Q ss_pred hhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHhhh
Q 013834 191 LSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLSES 270 (435)
Q Consensus 191 l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~~~ 270 (435)
+..++ .+|+ -.++.++++++++++. +.+|+.+++.+..++.. ...++.+.
T Consensus 177 ~~~~~-----------------~~~~-----~~l~~~~~~vl~~~~~-~~~T~~~~~~~~~~~~~-----~~~~~~~~-- 226 (317)
T 1kkh_A 177 FRKIK-----------------GEFE-----EFLKNCKFLIVYAEKR-KKKTAELVNEVAKIENK-----DEIFKEID-- 226 (317)
T ss_dssp EEEEC-----------------HHHH-----HHHHTCCEEEEEEECC-CSCHHHHHHHHHTCTTH-----HHHHHHHH--
T ss_pred ceEec-----------------CCcc-----cccccCcEEEEEECCC-cCcHHHHHHHHHHhhcc-----HHHHHHHH--
Confidence 11100 0010 0112236899999999 99999988876543321 11111111
Q ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCCCC
Q 013834 271 NSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIEP 350 (435)
Q Consensus 271 n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~Iep 350 (435)
. .+.+++.. +| +..++++|+.+|..+++++ +++
T Consensus 227 -~---------------------~~~~a~~~--------~d-----------~~~l~~~~~~~~~~~~~~~------~~~ 259 (317)
T 1kkh_A 227 -K---------------------VIDEALKI--------KN-----------KEDFGKLMTKNHELLKKLN------IST 259 (317)
T ss_dssp -H---------------------HHHHHHHC--------CS-----------HHHHHHHHHHHHHHHHTTT------CCC
T ss_pred -H---------------------HHHHHHHc--------CC-----------HHHHHHHHHHHHHHHHhcC------CCC
Confidence 0 01223322 22 3378999999999998864 589
Q ss_pred HHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCChhHHHHHHHhCCceEEeee
Q 013834 351 ESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVTKAWSSVNVLALLVR 407 (435)
Q Consensus 351 p~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~~~~l~~~w~~~gv~~L~~~ 407 (435)
|+++++++.+++. | +|+|++|||+|||+++|+.++..+++.+.|++.|...+.++
T Consensus 260 p~l~~~~~~~~~~-G-~ga~~sGaG~GG~v~~l~~~~~~~~~~~~l~~~g~~~~~~~ 314 (317)
T 1kkh_A 260 PKLDRIVDIGNRF-G-FGAKLTGAGGGGCVIILVNEEKEKELLKELNKEDVRIFNCR 314 (317)
T ss_dssp HHHHHHHHHHHHH-S-SEEEECSSSSSEEEEEECCGGGHHHHHHHHHTSSCEEEEEC
T ss_pred HHHHHHHHHHHhc-C-ceeEEeecCCCCEEEEEechhhHHHHHHHHHhcCCEEEEEE
Confidence 9999999999987 7 89999999999999999865556788889998886655443
No 13
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=99.88 E-value=9.1e-22 Score=201.51 Aligned_cols=233 Identities=14% Similarity=0.109 Sum_probs=148.9
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCc-cchhheeeCC---eeeeec
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSG-FDVSSAVYGS---QRYVRF 186 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG-~DvaaAvyGg---~~Y~rf 186 (435)
+.|||||||+++|++.||..+++ .++ +++++.++|+.+|..++| .+|| +|+++++||+ ..+..+
T Consensus 143 gaGLGSSaA~~vA~~~al~~l~~-~~l----------~~~~l~~la~~~E~~~~G-~~~G~~D~~~~~~Gg~~~~~~~~~ 210 (399)
T 1wuu_A 143 GGGLSSSASLEVATYTFLQQLCP-DSG----------TIAARAQVCQQAEHSFAG-MPCGIMDQFISLMGQKGHALLIDC 210 (399)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHSC-CCS----------CHHHHHHHHHHHHHHHTC-CCCCSHHHHHHHHCCTTEEEEEET
T ss_pred CCCccHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHHHHHhcC-CCCccHHHHHHHhccCCeEEEEec
Confidence 89999999999999999999998 665 889999999999999999 5777 6999999999 344433
Q ss_pred ChhhhhhhhhhhcCCchhhhhhhhccCCCccccccccCC-CCceEEEEecCCCCCCcHHH--------HHHHHHHh----
Q 013834 187 SPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLP-PLMTLLLGEPGTGGSSTPSM--------VGAVKKWQ---- 253 (435)
Q Consensus 187 ~p~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp-~~~~Lllgdtg~~~s~T~~l--------V~~V~~wr---- 253 (435)
.+. .++++++| +++++++.+++. +.+|+.. ++.+.+..
T Consensus 211 ~~~----------------------------~~~~~~~~~~~~~~vl~~~~~-~~~t~~~~y~~r~~~~~~a~~~l~~~~ 261 (399)
T 1wuu_A 211 RSL----------------------------ETSLVPLSDPKLAVLITNSNV-RHSLASSEYPVRRRQCEEVARALGKES 261 (399)
T ss_dssp TTC----------------------------CEEEEECCCSSEEEEEEEEEE-EC--CTTTHHHHHHHHHHHHHHTTCSS
T ss_pred CCC----------------------------ceEEecCCCCCeEEEEEECCC-ccccccccHHHHHHHHHHHHHHhChhh
Confidence 221 23455555 479999999998 8888632 11111110
Q ss_pred --hhCchhHHHHHHHHhhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHH
Q 013834 254 --KSDPQKSQETWKKLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAML 331 (435)
Q Consensus 254 --~~~pe~a~~~~~~L~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~ 331 (435)
...|+...+ .++...+...+ ++.....+.. ....+++++.+ +| +..++++|+
T Consensus 262 l~~~~~~~~~~---~~~~l~~~~~~---r~~~~~~e~~-r~~~~~~al~~--------~d-----------~~~lg~~m~ 315 (399)
T 1wuu_A 262 LREVQLEELEA---ARDLVSKEGFR---RARHVVGEIR-RTAQAAAALRR--------GD-----------YRAFGRLMV 315 (399)
T ss_dssp TTSCCHHHHTT---GGGGSCHHHHH---HHHHHHHHHH-HHHHHHHHHHT--------TC-----------HHHHHHHHH
T ss_pred hhcCCHHHHHH---HHhhcCHHHHH---HHHHHHhhHH-HHHHHHHHHHc--------CC-----------HHHHHHHHH
Confidence 001111000 00000110000 0000000000 01223344433 33 348999999
Q ss_pred HHHHHHHhccccCCCCCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCChhHHHHHHHhC-Cc--eEEeeee
Q 013834 332 GIRYHMRLMGEAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVTKAWSSV-NV--LALLVRE 408 (435)
Q Consensus 332 ~~r~lLr~lg~~sgv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~~~~l~~~w~~~-gv--~~L~~~~ 408 (435)
++|..|++.- .+++|++++|++.+++..|++|+|++|||||||+++|+.++..+.+.+.+++. ++ ..+.+.
T Consensus 316 ~~h~~l~~~~-----~~~~p~l~~l~~~a~~~~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~- 389 (399)
T 1wuu_A 316 ESHRSLRDDY-----EVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHYGGTATFYLSQ- 389 (399)
T ss_dssp HHHHHHHHTS-----CCCCHHHHHHHHHHHTSTTEEEEEECSSCSEEEEEEEEEGGGHHHHHHHHHHHCSSCCEEEEEC-
T ss_pred HHHHHHHHHh-----cCCCHHHHHHHHHHHhcCCceEEeeecCCCccEEEEEEccchHHHHHHHHHHHhCCCCcEEEEc-
Confidence 9999998622 35799999999999885699999999999999999999765456666666542 33 333333
Q ss_pred CCCCcEEE
Q 013834 409 DPHGVSLE 416 (435)
Q Consensus 409 ~~~Gv~~e 416 (435)
...|+++.
T Consensus 390 ~~~Ga~~~ 397 (399)
T 1wuu_A 390 AADGAKVL 397 (399)
T ss_dssp CCCCSEEC
T ss_pred CCCCeeec
Confidence 35687764
No 14
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=99.87 E-value=1.4e-20 Score=188.40 Aligned_cols=229 Identities=13% Similarity=0.154 Sum_probs=145.6
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCe---eeeecC
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQ---RYVRFS 187 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~---~Y~rf~ 187 (435)
+.|||||||+++|++.||..+++ .++ +++++.++|+.++...+|..++.+|.++++||+. ++..+.
T Consensus 99 g~GLGSSaA~~vA~~~al~~l~~-~~l----------~~~el~~la~~~e~~~~g~~~gi~d~~~~~~g~~~~~~~~d~~ 167 (350)
T 2cz9_A 99 GAGLSSSASFEVGILETLDKLYN-LKL----------DSLSKVLLAKKAENEFVGVPCGILDQFAVVFGREGNVIFLDTH 167 (350)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHTT-CCC----------CHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCCTTEEEEEETT
T ss_pred CCCcchHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHHHHHhcCCCccchhHHHHHhcCCCeEEEEecC
Confidence 89999999999999999999998 665 8899999999999988995454469999999962 333222
Q ss_pred hhhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCC--CcHHHHHHHHHHhhhCchhHHHHHH
Q 013834 188 PEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGS--STPSMVGAVKKWQKSDPQKSQETWK 265 (435)
Q Consensus 188 p~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s--~T~~lV~~V~~wr~~~pe~a~~~~~ 265 (435)
+ ..++++++|+++++++++++. ++ +|...-. |...++.+.+++.
T Consensus 168 ~----------------------------~~~~~l~~~~~~~~vl~~~~~-~~~~~t~~~~~-----r~~~~~~a~~~~~ 213 (350)
T 2cz9_A 168 T----------------------------LDYEYIPFPKDVSILVFYTGV-RRELASSEYAE-----RKHIAEESLKILG 213 (350)
T ss_dssp T----------------------------CCEEEEECCTTEEEEEEECSC-C----CHHHHH-----HHHHHHHHHHHHT
T ss_pred C----------------------------CcEEEEcCCCCcEEEEEECCC-CCccccchHHH-----HHHHHHHHHHHhC
Confidence 1 134567777789999999998 74 4443111 1111111111100
Q ss_pred --HHh--------hhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHH
Q 013834 266 --KLS--------ESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRY 335 (435)
Q Consensus 266 --~L~--------~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~ 335 (435)
.+. .....+.+. ......+.. ....+++++.+ +| +..++++|+++|.
T Consensus 214 ~~~lr~~~~~~~~~l~~~~~~~---~~~~~~~~~-~~~~~~~al~~--------~d-----------~~~lg~~~~~~~~ 270 (350)
T 2cz9_A 214 KGSSKEVREGELSKLPPLHRKF---FGYIVRENA-RVLEVRDALKE--------GN-----------VEEVGKILTTAHW 270 (350)
T ss_dssp CSCGGGCCGGGGGGSCHHHHHH---HHHHHHHHH-HHHHHHHHHHT--------TC-----------HHHHHHHHHHHHH
T ss_pred hhhhhhCCHHHHhhCCHHHHHH---HHHHhhHHH-HHHHHHHHHHh--------CC-----------HHHHHHHHHHHHH
Confidence 000 000000000 000000000 01223444443 33 3389999999999
Q ss_pred HHHhccccCCCCCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCChh----HHHHHHHhC-Cc--eEEeeee
Q 013834 336 HMRLMGEAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGS----NVTKAWSSV-NV--LALLVRE 408 (435)
Q Consensus 336 lLr~lg~~sgv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~~~----~l~~~w~~~-gv--~~L~~~~ 408 (435)
.|++.- .+++|++++|++.+++. |++|+|++|||||+|+++|+.++..+ .+.+.|.+. |+ ..+.++.
T Consensus 271 ~l~~~~-----~~~~p~l~~l~~~~~~~-Ga~ga~lsGaG~G~~v~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 344 (350)
T 2cz9_A 271 DLAKNY-----EVSCKELDFFVERALKL-GAYGARLTGAGFGGSAIALVDKEDAETIGEEILREYLKRFPWKARHFIVEP 344 (350)
T ss_dssp HHHHTT-----CCCCHHHHHHHHHHHHT-TCSEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHHCCSCCEEEEECE
T ss_pred HHHHHh-----cCCCHHHHHHHHHHHHc-CCCEEEEecCCCceEEEEEEchhhHHHHHHHHHHHHHHhhCCCCcEEEecC
Confidence 999832 35899999999999987 88999999999999999998765433 444567654 43 3444444
Q ss_pred CCCCcE
Q 013834 409 DPHGVS 414 (435)
Q Consensus 409 ~~~Gv~ 414 (435)
..|++
T Consensus 345 -~~Ga~ 349 (350)
T 2cz9_A 345 -SDGVG 349 (350)
T ss_dssp -ECCSB
T ss_pred -CCCCC
Confidence 45665
No 15
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=99.85 E-value=1.7e-20 Score=198.08 Aligned_cols=234 Identities=17% Similarity=0.158 Sum_probs=153.6
Q ss_pred CCCcChhHHHHHHHHHHHHHHh---ccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCC---eeee
Q 013834 111 KTGLGSSAAMTTAVVAALLHYL---GIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGS---QRYV 184 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~---~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg---~~Y~ 184 (435)
+.|| |||++|+++.||+.++ + +++ ++..+.++||.+|. .-|.+++++|+++++||+ ..+.
T Consensus 159 gsGL--SAA~~va~~~Al~~~~~g~~-~~l----------~~~~la~la~~aE~-~vG~~~G~mDQ~as~~G~~g~~l~i 224 (520)
T 3v2u_C 159 GGGL--SSAFTCAAALATIRANMGKN-FDI----------SKKDLTRITAVAEH-YVGVNNGGMDQATSVYGEEDHALYV 224 (520)
T ss_dssp TSSH--HHHHHHHHHHHHHHHHHCTT-CCC----------BHHHHHHHHTTGGG-GGTCCCCSHHHHHHHHCBTTBEEEE
T ss_pred CCCH--HHHHHHHHHHHHHHHhhccC-CCC----------CHHHHHHHHHHHHH-HhCCCCchhhHHHHHhCCCCeEEEE
Confidence 7899 9999999999999988 4 343 88999999999997 667899999999999998 5777
Q ss_pred ecChhhhhhhhhhhcCCchhhhhhhhccCCCccccccccCCC----CceEEEEecCCCCCCcHHHHHHHHHHhhhCchhH
Q 013834 185 RFSPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPP----LMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKS 260 (435)
Q Consensus 185 rf~p~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~----~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a 260 (435)
.|.|. .+++++++|+ ++.|+|.+|+. .++-..++..=++-|...++.+
T Consensus 225 d~~~~---------------------------l~~~~v~~p~~~~~~~~~vI~ns~v-~~~k~~la~s~YN~Rr~eCe~A 276 (520)
T 3v2u_C 225 EFRPK---------------------------LKATPFKFPQLKNHEISFVIANTLV-KSNKFETAPTNYNLRVIEVTVA 276 (520)
T ss_dssp ECSSS---------------------------CEEEEECCCCCSSCEEEEEEEECCC-CCCHHHHTTTTHHHHHHHHHHH
T ss_pred EcCCC---------------------------ceeEEeeCCCccCCCeEEEEEECCC-cccccccccchhhHHHHHHHHH
Confidence 77651 1344666776 89999999998 8776666555555666666665
Q ss_pred HHHHHH-------------------HhhhHHH------------------HHHHHHHHHhHHHHh---------------
Q 013834 261 QETWKK-------------------LSESNSA------------------LETQLNMLSKLAEEH--------------- 288 (435)
Q Consensus 261 ~~~~~~-------------------L~~~n~~------------------~~~~L~~l~~l~~~~--------------- 288 (435)
.++... |...... ....|..|.++..+.
T Consensus 277 a~~L~~~~g~~~~~~~~~~~~~~~sLRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~e~~~ 356 (520)
T 3v2u_C 277 ANALATRYSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEAST 356 (520)
T ss_dssp HHHHHHHTTBCCCCCCSCSSCTTCCHHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHHHHHH
T ss_pred HHHHHHhhCCcccccccccccccccHHHHhHhhhhhccccccccccchhhHHHHHHHHHHHHHHHhhhccccccHHHHHH
Confidence 554321 1111100 001122221111100
Q ss_pred ------H-----------------HHHHHHHHHHhhhhh-----hhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhc
Q 013834 289 ------W-----------------NAYKQVIESCSKLKS-----EKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLM 340 (435)
Q Consensus 289 ------~-----------------~~y~~~i~al~~l~~-----~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~l 340 (435)
+ ..|+|+...+.+... +-+..++..... ..+..++++|+++|..||.+
T Consensus 357 ~l~~~~~~l~~~~l~~~~~~~~~~~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~----~d~~~lg~lm~~sH~slr~~ 432 (520)
T 3v2u_C 357 ALNCSREEFTRDYLTTFPVRFQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDE----DFFTDFGRLMNESQASCDKL 432 (520)
T ss_dssp HTTSCHHHHHHHHTSSSCEEESCBCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHH----HHHHHHHHHHHHHHHHHHHT
T ss_pred hhcCChhhhhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccch----hHHHHHHHHHHHHHHHHHHh
Confidence 0 123333332221000 001001100000 12558999999999999997
Q ss_pred cccCCCCCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEe---cCCChhHHHHHH
Q 013834 341 GEAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVT---LGDSGSNVTKAW 396 (435)
Q Consensus 341 g~~sgv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~---~~~~~~~l~~~w 396 (435)
- .+++|+++.|++.|.+. |++|+|++|||+|||+|+|+ ..+..+.+.+++
T Consensus 433 ~-----~vS~peld~lv~~a~~~-Ga~GarlTGaG~GGc~iaLv~~~~~~~~~~~~~~l 485 (520)
T 3v2u_C 433 Y-----ECSCIETNQICSIALAN-GSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKAL 485 (520)
T ss_dssp S-----CCCCHHHHHHHHHHHHT-TCSEEEECSSCSSSEEEEEEEESTTCSHHHHHHHH
T ss_pred c-----CCCcHHHHHHHHHHHhC-CCCEEEEecCCCCceEEEEEcCCCHHHHHHHHHHH
Confidence 4 36999999999999885 99999999999999999999 555555555543
No 16
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.78 E-value=4.7e-18 Score=166.24 Aligned_cols=205 Identities=16% Similarity=0.120 Sum_probs=144.2
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCe-eeeecChh
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQ-RYVRFSPE 189 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~-~Y~rf~p~ 189 (435)
+.|||||||.++|++.||..+++ .++ +++++.++|+.++..++| .||+-|+++++|||. +++...+
T Consensus 88 g~GLGSSsa~~~a~~~al~~l~~-~~l----------~~~~l~~la~~~e~~~~g-~~~~ddv~~~~~gg~~~~~~~~~- 154 (296)
T 1h72_C 88 GSGLGSSAASSAGTAYAINELFK-LNL----------DKLKLVDYASYGELASSG-AKHADNVAPAIFGGFTMVTNYEP- 154 (296)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHTT-CCC----------CHHHHHHHHHHHHHHHHS-SCCCTTHHHHHHCSEEEEEETTT-
T ss_pred CCCccHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHhcCcccC-CCCccchHHHHhCCEEEEEeCCc-
Confidence 79999999999999999999998 665 889999999999999998 899999999999999 4432211
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHhh
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLSE 269 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~~ 269 (435)
..++++++|+++++++.+++. +.+|+.+.+.+. +..+ .. +.+.+
T Consensus 155 ---------------------------~~~~~~~~~~~~~~vl~~p~~-~~~T~~~~~~l~---~~~~--~~---~~~~~ 198 (296)
T 1h72_C 155 ---------------------------LEVLHIPIDFKLDILIAIPNI-SINTKEAREILP---KAVG--LK---DLVNN 198 (296)
T ss_dssp ---------------------------TEEEEECCCSCCCEEEECCSS-CCCHHHHHHTSC---SCCC--HH---HHHHH
T ss_pred ---------------------------eEEEEEcCCCCeEEEEEeCCC-CccHHHHHHhcc---CcCc--HH---HHHHH
Confidence 024566777789999999999 889988765432 1111 11 11111
Q ss_pred hHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHH--HHHHHHHHhccccCCCC
Q 013834 270 SNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAM--LGIRYHMRLMGEAAGVP 347 (435)
Q Consensus 270 ~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i--~~~r~lLr~lg~~sgv~ 347 (435)
.. .+ ..+++++.+ +| +..++++| +..|+.++.
T Consensus 199 ~~-~~------------------~~~~~al~~--------~d-----------~~~~~~~~~~n~~h~~~~~-------- 232 (296)
T 1h72_C 199 VG-KA------------------CGMVYALYN--------KD-----------KSLFGRYMMSDKVIEPVRG-------- 232 (296)
T ss_dssp HH-HH------------------HHHHHHHHT--------TC-----------HHHHHHHHTTCCSSHHHHH--------
T ss_pred HH-HH------------------HHHHHHHHc--------CC-----------HHHHHHHHhcCcchhhhhh--------
Confidence 00 00 122344433 33 33778888 445555554
Q ss_pred CCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCChhHHHHHHHhCCceEEeeeeCCCCcEE
Q 013834 348 IEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVTKAWSSVNVLALLVREDPHGVSL 415 (435)
Q Consensus 348 Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~~~~l~~~w~~~gv~~L~~~~~~~Gv~~ 415 (435)
+..|+++++++.+++. ++|++++|||+ |+|+|+..+..+.+.+.|++.+.....++. ..|+++
T Consensus 233 ~~~p~l~~~~~~~~~~--a~ga~~sGsG~--~v~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~Ga~v 295 (296)
T 1h72_C 233 KLIPNYFKIKEEVKDK--VYGITISGSGP--SIIAFPKEEFIDEVENILRDYYENTIRTEV-GKGVEV 295 (296)
T ss_dssp TTSTTHHHHHHHHTTT--EEEEEECTTSS--CEEEEECGGGHHHHHHHHHHHCSCEEEECB-CCCCEE
T ss_pred ccCccHHHHHHHHHhh--cceEEEecCCh--heEEEecHHHHHHHHHHHHHhccCceeccC-CCCeEe
Confidence 3688999999999887 67999999999 899998323367788888775543334444 677765
No 17
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.68 E-value=3e-16 Score=154.99 Aligned_cols=206 Identities=18% Similarity=0.138 Sum_probs=136.2
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChhh
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPEV 190 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~~ 190 (435)
+.|||||+|.++|++.|+..+++ .++ +++++.++|...+ ||+-|+++++|||..+.....+.
T Consensus 83 ~~GLGsssa~~~a~~~al~~~~~-~~l----------~~~el~~la~~~e-------g~~ddv~~~~~GG~~~~~g~ge~ 144 (298)
T 3hul_A 83 ARGLGSSSAAVVAGIELANTLAE-LNL----------SKEEKVRIAAEIE-------GHPDNVAPAVLGNWVVGAKLDGE 144 (298)
T ss_dssp TSSSSHHHHHHHHHHHHHHHHTT-CCC----------CHHHHHHHHHHHH-------SCSTTHHHHHHCSEEEEEEETTE
T ss_pred CCCccHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHhc-------CCcccCcccccCCEEEEEeCCCc
Confidence 78999999999999999999998 665 8888888887764 67789999999999664432211
Q ss_pred hhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHhhh
Q 013834 191 LSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLSES 270 (435)
Q Consensus 191 l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~~~ 270 (435)
+ .+.++++| .+++++...+. +.+|+...+.+. +..+ ... .+.+.
T Consensus 145 ~--------------------------~~~~~~~p-~~~~vlv~p~~-~~sT~~a~~~l~---~~~~-~~~----~~~~~ 188 (298)
T 3hul_A 145 D--------------------------FYVRHLFP-DCALIAFIPKA-ELLTSESRGVLP---DTLP-FKE----AVQAS 188 (298)
T ss_dssp E--------------------------EEEEECCC--CEEEEEECCC-CCC--------C---CEEE-HHH----HHHHH
T ss_pred E--------------------------EEEEcCCC-CeEEEEEECCC-CCCcHHHHHHHh---hhcc-HHH----HHHHH
Confidence 0 22355666 48999999998 889987654332 1111 111 11110
Q ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHH--HHHHHHhccccCCCCC
Q 013834 271 NSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLG--IRYHMRLMGEAAGVPI 348 (435)
Q Consensus 271 n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~--~r~lLr~lg~~sgv~I 348 (435)
.+ ...++.++.+ +| +..++++|+. .++..+..
T Consensus 189 --------~~-----------~~~~~~al~~--------~d-----------~~~l~~~l~nd~~~e~~~~~-------- 222 (298)
T 3hul_A 189 --------SI-----------ANVMIAAILR--------ND-----------MTLAGEMMERDLWHEKYRSQ-------- 222 (298)
T ss_dssp --------HH-----------HHHHHHHHTT--------TC-----------HHHHHHHHTCCCC-----CT--------
T ss_pred --------HH-----------HHHHHHHHHc--------CC-----------HHHHHHHHhhhHHHHHHHHh--------
Confidence 00 0123444433 33 2367777752 24444432
Q ss_pred CCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCChhHHHHHHHhCC--ceEEeeeeCCCCcEEEecC
Q 013834 349 EPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVTKAWSSVN--VLALLVREDPHGVSLESCD 419 (435)
Q Consensus 349 epp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~~~~l~~~w~~~g--v~~L~~~~~~~Gv~~e~~~ 419 (435)
..|+++++++.+++. |++|++++|||+ |+|+|+..+..+++.+.|++.+ ...+.++.+..|++++...
T Consensus 223 ~~p~l~~l~~~~~~~-Ga~ga~~SGsGp--tv~al~~~~~a~~v~~~l~~~~~~~~~~~~~~~~~Ga~v~~~~ 292 (298)
T 3hul_A 223 LVPHLAQIRDVAKNQ-GAYAACLSGAGP--TVLVFAPRNLANKLQTSLQTLEIDADVLLLDVEGSGAEVFREG 292 (298)
T ss_dssp TGGGHHHHHHHHHTT-TCCEEEECTTSS--CEEEEECGGGHHHHHHHHHTTCCSSEEEEEEBCCCCCEEEECC
T ss_pred hCchHHHHHHHHHHC-CCEEEEEeccch--heEEEECHHHHHHHHHHHHhcCCCcEEEEcccCCCceEEEecc
Confidence 268899999999887 899999999997 7899987434788899999876 6788889999999998753
No 18
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.64 E-value=5e-15 Score=146.79 Aligned_cols=198 Identities=17% Similarity=0.143 Sum_probs=134.7
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChhh
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPEV 190 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~~ 190 (435)
+.|||||+|.++|++.|+..+++ .++ +++++.++|...+ .|++.++|||..+-+...+
T Consensus 100 ~~GLGsssa~a~a~l~al~~~~~-~~l----------~~~~l~~la~~~~----------~Dv~~~~~Gg~~~~~g~ge- 157 (306)
T 3pyf_A 100 AGGMAGGSADAAAVLVAMNSLWE-LNV----------PRRDLRMLAARLG----------SDVPFALHGGTALGTGRGE- 157 (306)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHTT-CCC----------CHHHHHHHHHHHC----------TTHHHHHHBSEEEECSSSS-
T ss_pred CCCcchHHHHHHHHHHHHHHHhC-CCc----------CHHHHHHHHHHhC----------CCCceeecCceEEEEeeCC-
Confidence 78999999999999999999998 665 8888888776542 3999999999855443211
Q ss_pred hhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHhhh
Q 013834 191 LSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLSES 270 (435)
Q Consensus 191 l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~~~ 270 (435)
.++|++.|+.+++++.+.+. +.+|+...+.+...+.... .. .+..
T Consensus 158 ---------------------------~~~~l~~~~~~~~vl~~P~~-~vsT~~a~~~l~~~~~~~~-~~-----~~~~- 202 (306)
T 3pyf_A 158 ---------------------------ELATVLSRNTFHWVLAFADS-GLLTSAVYNELDRLREVGD-PP-----RLGE- 202 (306)
T ss_dssp ---------------------------CCEEECCSSCEEEEEEECSS-CCCHHHHHHHHHHHHHHSC-CC-----CCCC-
T ss_pred ---------------------------eEEEccCCCCcEEEEEECCC-CCcHHHHHHhhhhhccccc-cc-----cccC-
Confidence 24466777789999999999 9999988777654332100 00 0000
Q ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHH-HHHHHHHhccccCCCCCC
Q 013834 271 NSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAML-GIRYHMRLMGEAAGVPIE 349 (435)
Q Consensus 271 n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~-~~r~lLr~lg~~sgv~Ie 349 (435)
. ..++.++.+ +|. ..+++.|. ..+..... .
T Consensus 203 ~---------------------~~~~~al~~--------~d~-----------~~l~~~l~n~le~~~~~---------~ 233 (306)
T 3pyf_A 203 P---------------------GPVLAALAA--------GDP-----------DQLAPLLGNEMQAAAVS---------L 233 (306)
T ss_dssp H---------------------HHHHHHHHH--------TCH-----------HHHGGGCEETTHHHHHH---------H
T ss_pred H---------------------HHHHHHHHh--------CCH-----------HHHHHHhccchHHHHHH---------h
Confidence 0 011222221 111 12222221 11111111 2
Q ss_pred CHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC-hhHHHHHHHhCCc--eEEeeeeCCCCcEEEe
Q 013834 350 PESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS-GSNVTKAWSSVNV--LALLVREDPHGVSLES 417 (435)
Q Consensus 350 pp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~~l~~~w~~~gv--~~L~~~~~~~Gv~~e~ 417 (435)
.|++.++++.+.+. |++|+++||+| .|+|+|+.++. .+++.+.|++.|+ ..+.++.+..|++++.
T Consensus 234 ~P~l~~i~~~~~~~-Ga~ga~mSGsG--ptvfal~~~~~~a~~~~~~l~~~g~~~~v~~~~~~~~Ga~v~~ 301 (306)
T 3pyf_A 234 DPALARALRAGVEA-GALAGIVSGSG--PTCAFLCTSASSAIDVGAQLSGAGVCRTVRVATGPVPGARVVS 301 (306)
T ss_dssp CTHHHHHHHHHHHT-TCSEEEECTTS--SEEEEEESSHHHHHHHHHHHHHTTSSSEEEEEEECCBCSEEC-
T ss_pred ChHHHHHHHHHHhc-CCCEEEEcCcc--hhheEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCCCCEEec
Confidence 68899999999887 88999999998 48999987654 6788889998876 7888889999999974
No 19
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.41 E-value=4.8e-13 Score=129.83 Aligned_cols=180 Identities=17% Similarity=0.121 Sum_probs=112.8
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChhh
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPEV 190 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~~ 190 (435)
+.|||||||.++|++.||..+++ .+ . ++.++|... | .|+++++||+..+.+...+
T Consensus 88 g~GLGSSsa~a~a~l~al~~l~~-~~----------l---~l~~la~~~-----g-----~dv~~~~~Gg~~~~~g~g~- 142 (275)
T 1uek_A 88 GAGLGGGSSDAAQVLLALQALYP-AE----------V---DLFALARTL-----G-----ADVPFFLLGRGAEARGVGE- 142 (275)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHSC-SC----------C---CHHHHHHHH-----C-----TTHHHHHHCSEEEEETTTT-
T ss_pred cCcccHHHHHHHHHHHHHHHHcC-CC----------h---HHHHHHHHh-----C-----CChHHHhcCCeEEEEccCc-
Confidence 79999999999999999999998 33 1 244444332 2 3999999999955443221
Q ss_pred hhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhh-hCchhHHHHHHHHhh
Q 013834 191 LSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQK-SDPQKSQETWKKLSE 269 (435)
Q Consensus 191 l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~-~~pe~a~~~~~~L~~ 269 (435)
.+++++ ++++++++.+++. +.+|+.+.+.+..-.. ..+ ...
T Consensus 143 ---------------------------~~~~l~-~~~~~~vl~~p~~-~~sT~~~~~~~~~~~~~~~~-~~~-------- 184 (275)
T 1uek_A 143 ---------------------------RLKPLA-LPPVPAVVFFPGL-RVPTPLVYRAVRPEDFGPDL-PVE-------- 184 (275)
T ss_dssp ---------------------------EEEEEC-CCCEEEEEEECCC-CCCHHHHHHTCCGGGCCCCC-CHH--------
T ss_pred ---------------------------eeEEcc-CCCcEEEEEeCCC-CCchHHHHHhCchhhcccCC-ChH--------
Confidence 234555 5579999999998 9999977654321000 011 100
Q ss_pred hHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCCC
Q 013834 270 SNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIE 349 (435)
Q Consensus 270 ~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~Ie 349 (435)
.+++++.. . |.. +.|+..+..+.. .
T Consensus 185 ------------------------~~~~al~~---~-~~~------------------~~~n~l~~~~~~---------~ 209 (275)
T 1uek_A 185 ------------------------AILEALAR---G-EEP------------------PYWNSLEGPAFR---------L 209 (275)
T ss_dssp ------------------------HHHHHHHH---T-CCC------------------SCCBTTHHHHHH---------H
T ss_pred ------------------------HHHHHHHh---c-ccc------------------ccccchHHHHHH---------h
Confidence 11122221 0 100 001110111111 2
Q ss_pred CHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC-hhHHHHHHHhCCceEEeeeeCCCC
Q 013834 350 PESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS-GSNVTKAWSSVNVLALLVREDPHG 412 (435)
Q Consensus 350 pp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~~l~~~w~~~gv~~L~~~~~~~G 412 (435)
.|+++++++.+++. |++|++++|||+ |+|+|+.+++ .+++.+.|++.+ ..+..+....|
T Consensus 210 ~p~l~~l~~~~~~~-Ga~ga~~SGsG~--~v~~l~~~~~~~~~~~~~l~~~~-~~~~~~~~~g~ 269 (275)
T 1uek_A 210 FPELKEVRGRMRAL-GLRGVLMSGSGS--AFFGLAEGPDHARRAAEALRAWG-RAWAGTLGGGD 269 (275)
T ss_dssp CTHHHHHHHHHHHT-TCEEEEECTTSS--CEEEECSSHHHHHHHHHHHTTTS-EEEEEEECCC-
T ss_pred ChHHHHHHHHHHhC-CCCEEEEecccc--CeEEEeCCHHHHHHHHHHhhhcc-EEEEEEecCCC
Confidence 58899999999887 889999999996 8999987643 567888888766 65655555444
No 20
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.41 E-value=1.7e-11 Score=122.76 Aligned_cols=213 Identities=14% Similarity=0.097 Sum_probs=126.2
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCe-eeeecChh
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQ-RYVRFSPE 189 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~-~Y~rf~p~ 189 (435)
+.|||||||..+|++.|+..+++ +++ +++++.++|+.. || |++.++|||+ ++.+....
T Consensus 106 ~~GLgSSaa~~~a~~~a~~~l~~-~~l----------~~~el~~la~~~---------~g-~~~~~~~GG~~~~~~g~~~ 164 (332)
T 3qt5_A 106 AAGLASSASAYAALAAACNEALS-LNL----------SDTDLSRLARRG---------SG-SASRSIFGGFAEWEKGHDD 164 (332)
T ss_dssp GGTCCCHHHHHHHHHHHHHHHHT-CCC----------CHHHHHHHHHHH---------CG-GGGGGGSCSEEEEECCSST
T ss_pred CCCcchHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHh---------cC-CchhhhcCCeEEEecCCCC
Confidence 79999999999999999999998 665 777777776553 33 8899999999 44332110
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCcccccccc---CCCCceEEEEecCCC--CCCcHHHHHHHHHHhhhCchhHHHHH
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFS---LPPLMTLLLGEPGTG--GSSTPSMVGAVKKWQKSDPQKSQETW 264 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~---lp~~~~Lllgdtg~~--~s~T~~lV~~V~~wr~~~pe~a~~~~ 264 (435)
. ++ ..++++ .++.+++++.-.+.+ +.+|.....+.. ...+....
T Consensus 165 ~-----------------------~~--~~~~l~~~~~~~~l~~vv~vp~~~~~~~ss~~~~~~~~---~~s~~~~~--- 213 (332)
T 3qt5_A 165 L-----------------------TS--YAHGINSNGWEKDLSMIFVVINNQSKKVSSRSGMSLTR---DTSRFYQY--- 213 (332)
T ss_dssp T-----------------------TC--EEEEECCTTGGGGEEEEEECCCCCCCC--CHHHHHHHH---HHCTTHHH---
T ss_pred c-----------------------cc--eeeecccccCCCCcEEEEEEEcCCCCCCchHHHHHHhh---hcChhHHH---
Confidence 0 00 011222 233577766655431 222333222221 12221111
Q ss_pred HHHhhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccC
Q 013834 265 KKLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAA 344 (435)
Q Consensus 265 ~~L~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~s 344 (435)
.+.+..+. ...++.+|.+ +| +..++++|..++..|.++....
T Consensus 214 -~v~~~~~~------------------~~~l~~Al~~--------~D-----------~~~l~~~~~~d~~~lh~~~~~~ 255 (332)
T 3qt5_A 214 -WLDHVDED------------------LNEAKEAVKN--------QD-----------FQRLGEVIEANGLRMHATNLGA 255 (332)
T ss_dssp -HHHHHHHH------------------HHHHHHHHHH--------TC-----------HHHHHHHHHHHHHHHHHHHHTS
T ss_pred -HHHHHHHH------------------HHHHHHHHHc--------CC-----------HHHHHHHHHHHHHHHHHHhccc
Confidence 11111111 1234556554 33 3489999987777777765432
Q ss_pred --CCCCCCHHHHHHHHHHH--hcCCceeeeecCCCccceeEEEecCCChhHHHHHHHhC--CceEEeeeeCCCCcEE
Q 013834 345 --GVPIEPESQTQLLNATM--DMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVTKAWSSV--NVLALLVREDPHGVSL 415 (435)
Q Consensus 345 --gv~Iepp~lt~Lld~a~--~~~Gvlgakv~GAGGGD~iiaL~~~~~~~~l~~~w~~~--gv~~L~~~~~~~Gv~~ 415 (435)
.+..-.|...++++.+. ...|++|+.++|||. ++++|+.++..+++.+.+++. ..+.+.......|+++
T Consensus 256 ~p~~~yl~p~~~~i~~~~~~~~~~Ga~~a~~SGaGP--tv~~l~~~~~a~~v~~~l~~~~~~~~~~v~~~~g~G~~~ 330 (332)
T 3qt5_A 256 QPPFTYLVQESYDAMAIVEQCRKANLPCYFTMDAGP--NVKVLVEKKNKQAVMEQFLKVFDESKIIASDIISSGVEI 330 (332)
T ss_dssp SSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSSS--CEEEEEEHHHHHHHHHHHHTTSCGGGEEEEEBCSSCCEE
T ss_pred CCCceeeChHHHHHHHHHHHHHhCCCcEEEEeCCCC--cEEEEECHHHHHHHHHHHHHhCCCceEEEeccccCCcEe
Confidence 34446799999998874 134899999998876 688888754467777777653 2344444344567654
No 21
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.36 E-value=6e-11 Score=117.32 Aligned_cols=208 Identities=14% Similarity=0.096 Sum_probs=124.1
Q ss_pred CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChh
Q 013834 110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPE 189 (435)
Q Consensus 110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~ 189 (435)
.+.|||||||..+|++.|+..+++ .++ +++++.++|+.. +| +++.++|||+.....+..
T Consensus 103 ~~~GLGSSaA~~vA~~~al~~l~g-~~l----------s~~el~~la~~~---------~G-~~~~~~~GG~~~~~~~~~ 161 (317)
T 2gs8_A 103 TAAGLSSSSSGLSALVKACDQLFD-TQL----------DQKALAQKAKFA---------SG-SSSRSFFGPVAAWDKDSG 161 (317)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHHHT-CCC----------CHHHHHHHHHHH---------HG-GGGGGGSCSEEEECTTTC
T ss_pred CCCchHHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHhh---------cc-hhHhhhcCChheEeeCCC
Confidence 378999999999999999999998 665 888888887543 22 678889999943322210
Q ss_pred hhhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCce--EEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHH
Q 013834 190 VLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMT--LLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKL 267 (435)
Q Consensus 190 ~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~--Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L 267 (435)
++ ..+| +|..++ +++.+++..+.+|..-..+++. ..+. ... .+
T Consensus 162 ------------------------~~--~~~~--~~~~~~~~v~i~~~~~~~~~tt~~~~~~~~---~~~~-~~~---~~ 206 (317)
T 2gs8_A 162 ------------------------AI--YKVE--TDLKMAMIMLVLNAAKKPISSREGMKLCRD---TSTT-FDQ---WV 206 (317)
T ss_dssp ------------------------CE--EECC--CCCCEEEEEEECCCSSCCSCHHHHHHHHHH---HCTT-HHH---HH
T ss_pred ------------------------ce--eEEE--ccccccEEEEEEECCCcCcccHHHHHHHhh---cCHH-HHH---HH
Confidence 00 1112 233456 4444663314345554444332 1221 111 11
Q ss_pred hhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccC--C
Q 013834 268 SESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAA--G 345 (435)
Q Consensus 268 ~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~s--g 345 (435)
...+..+ ..++.++.+ +| +..++++|.++|..|+++.... .
T Consensus 207 ~~~~~~~------------------~~~~~al~~--------~d-----------~~~lg~~~~~~~~~l~~~~~~~~p~ 249 (317)
T 2gs8_A 207 EQSAIDY------------------QHMLTYLKT--------NN-----------FEKVGQLTEANALAMHATTKTANPP 249 (317)
T ss_dssp HHHHHHH------------------HHHHHHHHT--------TC-----------HHHHHHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHH------------------HHHHHHHHc--------CC-----------HHHHHHHHHHHHHHHHHHhhccCCC
Confidence 1111111 234455544 33 3489999999999998876543 2
Q ss_pred CCCCCHHHHHHHHHHHh--cCCceeeeecCCCccceeEEEecCCChhHHHHHHHhCCceEEeeeeCCCCcE
Q 013834 346 VPIEPESQTQLLNATMD--MEGVLLAGVPGAGGFDAVFAVTLGDSGSNVTKAWSSVNVLALLVREDPHGVS 414 (435)
Q Consensus 346 v~Iepp~lt~Lld~a~~--~~Gvlgakv~GAGGGD~iiaL~~~~~~~~l~~~w~~~gv~~L~~~~~~~Gv~ 414 (435)
.....|...++++.+.. ..|+.++.++|||+ |+++|+.++..+++.+.|++ ..+.+.++. .+|++
T Consensus 250 ~~~l~~~~~~i~~~~~~~~~~G~~~~~~SGaGp--tv~~l~~~~~~~~v~~~l~~-~~~~~~~~~-~~~~~ 316 (317)
T 2gs8_A 250 FSYLTKESYQAMEAVKELRQEGFACYFTMDAGP--NVKVLCLEKDLAQLAERLGK-NYRIIVSKT-KDLPD 316 (317)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTCCEEEECCSSS--CEEEEEEGGGHHHHHHHHHT-TSEEEEEEB-CCCCC
T ss_pred ceeEhHHHHHHHHHHHHHHhcCCcEEEEecCCC--eEEEEEcHHHHHHHHHHHhc-CCeEEEEec-CCCCC
Confidence 22345666777654332 24788999999986 68898875556778888877 345555553 34654
No 22
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.36 E-value=4.8e-12 Score=122.67 Aligned_cols=88 Identities=19% Similarity=0.139 Sum_probs=68.0
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChhh
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPEV 190 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~~ 190 (435)
+.|||||||..+|++.|+..+++ .++ +++++.++|+.++ .|++++.||+..+.+...+
T Consensus 93 g~GLGsSsa~a~a~l~al~~l~~-~~l----------~~~el~~la~~~e----------~dv~~~~~gg~~~~~g~g~- 150 (271)
T 2v8p_A 93 GAGLGGGSSNLAVVLKKVNELLG-SPL----------SEEELRELVGSIS----------ADAPFFLLGKSAIGRGKGE- 150 (271)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHTT-CCS----------CHHHHHHHHHHHC----------TTTGGGGTCSEEEEETTTT-
T ss_pred CCCCchHHHHHHHHHHHHHHhcC-CCc----------CHHHHHHHHHHhC----------CCHHHHhcCCeEEEEEcCC-
Confidence 78999999999999999999998 665 7877877776652 2999999999955432111
Q ss_pred hhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHH
Q 013834 191 LSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGA 248 (435)
Q Consensus 191 l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~ 248 (435)
.++++++|.++++++.+++. +.+|+.+.+.
T Consensus 151 ---------------------------~~~~l~~~~~~~~vl~~p~~-~~sT~~~~~~ 180 (271)
T 2v8p_A 151 ---------------------------VLEPVETEISGKITLVIPQV-SSSTGRVYSS 180 (271)
T ss_dssp ---------------------------EEEECCCCCCSEEEEEECSS-CCCHHHHHHT
T ss_pred ---------------------------EEEEccCCCCcEEEEEeCCC-CCCHHHHHHh
Confidence 23455544378999999998 8999887654
No 23
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=99.14 E-value=2.7e-09 Score=106.36 Aligned_cols=187 Identities=13% Similarity=0.058 Sum_probs=114.6
Q ss_pred CCCcChhHHHHHHHH----HHHHHHhccccCCCccccCCCC-CHHHHHHHHHHHHHHHcCCCCCccchhheeeCCee-ee
Q 013834 111 KTGLGSSAAMTTAVV----AALLHYLGIVNLSSSIDQQHDG-DLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQR-YV 184 (435)
Q Consensus 111 KtGLGSSAAlvvalv----~ALl~~~~~~~l~~~~~~~~~~-~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~-Y~ 184 (435)
..|||||||..+|++ .|+..+++ ++ . +++++.++|. + ||| |++.|+|||++ +.
T Consensus 104 aaGLgSSAA~~aA~~~~~~~aln~l~g-l~----------l~s~~eL~~lA~------~---gsG-saa~si~GG~v~~~ 162 (323)
T 3lto_A 104 SSGLASSASSFAALTKCASIALSELTQ-KP----------LPSIDEQAQLSR------L---GSG-SSCRSFYAPWALWT 162 (323)
T ss_dssp TTTCCCHHHHHHHHHHHHHHHHHHHHT-CC----------CCCHHHHHHHHH------T---TCG-GGGGGGSCSEEEEE
T ss_pred ccCcchhHHHHHHHHHHHHHHHHHHhC-CC----------CCCHHHHHHHHH------H---hCC-CcchhhhCCEEEEe
Confidence 699999999999999 99999998 54 4 5655555441 3 344 78999999995 44
Q ss_pred ecChhhhhhhhhhhcCCchhhhhhhhccCCCcccccccc-CCCCceEEEEec---CCCCCCcHHHHHHHHHHhhhCchhH
Q 013834 185 RFSPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFS-LPPLMTLLLGEP---GTGGSSTPSMVGAVKKWQKSDPQKS 260 (435)
Q Consensus 185 rf~p~~l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~-lp~~~~Lllgdt---g~~~s~T~~lV~~V~~wr~~~pe~a 260 (435)
++.. +++. .++.+++++.-+ .. +-+|....+.+ +..+ ..
T Consensus 163 ~g~~-------------------------------~~l~~~~~~l~~~v~vi~~~~~-~vsT~~~~~~l----~~~~-~~ 205 (323)
T 3lto_A 163 GDKV-------------------------------SAIDLPYKDLLHQVIVISSQEK-EIPSRVAHKLV----KTSP-FY 205 (323)
T ss_dssp TTEE-------------------------------EECCCSCCSCEEEEEECCCCTT-CCCHHHHHHHG----GGST-TT
T ss_pred cCcE-------------------------------EEccCCCCCCeEEEEEECCCCC-CCCCHHHHhhc----ccCh-hH
Confidence 3211 0110 112455544443 33 34677655542 2222 11
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhc
Q 013834 261 QETWKKLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLM 340 (435)
Q Consensus 261 ~~~~~~L~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~l 340 (435)
+.. ++..... ...++++|.+ +| +..+++.+..++..|.++
T Consensus 206 ~~~---~~~~~~~------------------~~~l~~AL~~--------gD-----------~~~l~~~~~~d~~~LHa~ 245 (323)
T 3lto_A 206 ETR---SERAEAN------------------LKLLLNAFEN--------KD-----------WTSIYQICWHEFLDMHQL 245 (323)
T ss_dssp TTH---HHHHHHH------------------HHHHHHHHHT--------TC-----------HHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHhHHH------------------HHHHHHHHHc--------CC-----------HHHHHHHHHHHHHHHhHH
Confidence 111 1111111 1345566654 44 348899888888888875
Q ss_pred ccc--CCCCCCCHHHHHHHHHHHhc---CCceeeeecCCCccceeEEEecCCChhHHHHHHH
Q 013834 341 GEA--AGVPIEPESQTQLLNATMDM---EGVLLAGVPGAGGFDAVFAVTLGDSGSNVTKAWS 397 (435)
Q Consensus 341 g~~--sgv~Iepp~lt~Lld~a~~~---~Gvlgakv~GAGGGD~iiaL~~~~~~~~l~~~w~ 397 (435)
... -...+..|...++++.+.++ .|+.++.++|||.. +++|+..+..+.|.+..+
T Consensus 246 ~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~~~~~tsgAGPn--v~~l~~~~~~~~v~~~l~ 305 (323)
T 3lto_A 246 FKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAGPN--VHLLYRSDQTDLARQFKS 305 (323)
T ss_dssp HHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECCSSSC--EEEEECGGGHHHHHHHHH
T ss_pred HhccCCCceecCchHHHHHHHHHHHHHhCCCeEEEEECCCCC--eEEEEecccHHHHHHHHH
Confidence 543 24556678888888888663 48899999999998 566665555566666543
No 24
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.13 E-value=4.2e-11 Score=117.12 Aligned_cols=87 Identities=24% Similarity=0.314 Sum_probs=67.6
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChhh
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPEV 190 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~~ 190 (435)
+.|||||||..+|++.|+..+++ .++ +++++.++|+.+ + .|++++.||+..+.+....
T Consensus 101 g~GLGsSsa~~~a~l~al~~l~~-~~l----------~~~~l~~la~~~--------e--~dv~~~~~gg~~~~~g~g~- 158 (283)
T 2ww4_A 101 GGGLGGGSSNAATVLVALNHLWQ-CGL----------SMDELAEMGLTL--------G--ADVPVFVRGHAAFAEGVGE- 158 (283)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHTT-CCC----------CHHHHHHHHHTT--------C--TTHHHHHHTBCEEEETTTT-
T ss_pred CCCccHHHHHHHHHHHHHHHhcC-CCc----------CHHHHHHHHHHh--------C--CCHHHhhcCCeEEEEecCc-
Confidence 79999999999999999999998 665 777777765433 2 2999999999866554321
Q ss_pred hhhhhhhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecCCCCCCcHHHHHH
Q 013834 191 LSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGA 248 (435)
Q Consensus 191 l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~ 248 (435)
.++++++| ++++++.+++. +.+|+.+.+.
T Consensus 159 ---------------------------~~~~l~~~-~~~~vl~~p~~-~~sT~~~~~~ 187 (283)
T 2ww4_A 159 ---------------------------ILTPVDPP-EKWYLVAHPGV-SIPTPVIFKD 187 (283)
T ss_dssp ---------------------------EEEECCCC-CCEEEEECCSC-CCCHHHHHTC
T ss_pred ---------------------------cceEcCCC-CcEEEEEeCCC-CCchHHHHhc
Confidence 12355555 68999999999 9999988765
No 25
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=99.05 E-value=6.9e-09 Score=106.83 Aligned_cols=198 Identities=12% Similarity=0.086 Sum_probs=111.8
Q ss_pred CCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCeeeeecChhh
Q 013834 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPEV 190 (435)
Q Consensus 111 KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~~ 190 (435)
..|||||||..+|++.|+..+++ +++ ++++|.++|... +| |++.++|||++...+.+.
T Consensus 135 ~aGLGSSAA~aaA~l~Aln~l~g-l~L----------s~~eLa~lA~~g---------~G-s~~~sl~GG~v~~~~G~~- 192 (416)
T 1fi4_A 135 AAGLASSAAGFAALVSAIAKLYQ-LPQ----------STSEISRIARKG---------SG-SACRSLFGGYVAWEMGKA- 192 (416)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHTT-CCS----------CHHHHHHHHHHH---------HG-GGGGGGSSSEEEEECCSC-
T ss_pred cCCccHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHhcc---------CC-chheEeeCCcEEEecCCc-
Confidence 67999999999999999999998 665 777776666432 22 788999999943322110
Q ss_pred hhhhhhhhcCCchhhhhhhhccCCCcccccccc---CCCCce--EEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHH
Q 013834 191 LSSAQVAVKETPLQEVITGILKGKWDHERAMFS---LPPLMT--LLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWK 265 (435)
Q Consensus 191 l~~~~~~~~~~~~~~~l~~l~~~~W~~~~~~~~---lp~~~~--Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~ 265 (435)
.+ + .++ ..+++. ..++++ +++.+.+..+.+|..-..++. ...+.. . +
T Consensus 193 -~~------~------------~~~--~~~~l~~~~~~p~l~~vvlv~~~~~~~~sst~~~~~~~---~~~~~~-~---~ 244 (416)
T 1fi4_A 193 -ED------G------------HDS--MAVQIADSSDWPQMKACVLVVSDIKKDVSSTQGMQLTV---ATSELF-K---E 244 (416)
T ss_dssp -TT------C------------TTC--EEEEEECGGGSTTEEEEEEEECCCSCCCCHHHHHHHHH---HHCSHH-H---H
T ss_pred -CC------C------------CCc--eeEEecCccCCcccEEEEEEECCCCCCcCCHHHHHHHh---hcCHhH-H---H
Confidence 00 0 000 011111 123566 556666331333443333332 112211 1 1
Q ss_pred HHhhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCC
Q 013834 266 KLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAG 345 (435)
Q Consensus 266 ~L~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sg 345 (435)
.+...+.. ....++.+|.+ +| +..++++|.+++..|.++.....
T Consensus 245 ~~~~i~~~-----------------~~~~l~~AL~~--------gD-----------~~~~g~~~~~d~~~lh~~~~~~~ 288 (416)
T 1fi4_A 245 RIEHVVPK-----------------RFEVMRKAIVE--------KD-----------FATFAKETMMDSNSFHATCLDSF 288 (416)
T ss_dssp HHHTHHHH-----------------HHHHHHHHHHT--------TC-----------HHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHH-----------------HHHHHHHHHHc--------CC-----------HHHHHHHHHHHHHHHHHHhhccC
Confidence 12111110 11234556654 34 34899999988888888665332
Q ss_pred --CCCCCHHHHHHHHHHHhc---CC-ceeeeecCCCccceeEEEecCCChhHHHHHH
Q 013834 346 --VPIEPESQTQLLNATMDM---EG-VLLAGVPGAGGFDAVFAVTLGDSGSNVTKAW 396 (435)
Q Consensus 346 --v~Iepp~lt~Lld~a~~~---~G-vlgakv~GAGGGD~iiaL~~~~~~~~l~~~w 396 (435)
...-.|...++++.+.++ .| +.++.++|||. ++++|+.++..+.+.+.|
T Consensus 289 p~~~~l~p~~~~i~~~~~~~r~~~Ga~~~a~~SGaGP--tv~al~~~~~~~~v~~~l 343 (416)
T 1fi4_A 289 PPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAGP--NAVLYYLAENESKLFAFI 343 (416)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSSS--CEEEEEEGGGHHHHHHHH
T ss_pred CceeeecHHHHHHHHHHHHHHHhcCCceEEEEecCCC--cEEEEECHHHHHHHHHHH
Confidence 223466777777665443 25 67888999997 488887654444554443
No 26
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=98.95 E-value=9.4e-09 Score=105.25 Aligned_cols=73 Identities=11% Similarity=0.060 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHhcccc--CCCCCCCHHHHHHHHHHHhcC----CceeeeecCCCccceeEEEecCCChhHHHHHH
Q 013834 323 LLGARDAMLGIRYHMRLMGEA--AGVPIEPESQTQLLNATMDME----GVLLAGVPGAGGFDAVFAVTLGDSGSNVTKAW 396 (435)
Q Consensus 323 ~~~l~~~i~~~r~lLr~lg~~--sgv~Iepp~lt~Lld~a~~~~----Gvlgakv~GAGGGD~iiaL~~~~~~~~l~~~w 396 (435)
+..+++++..++..|.++... -.+.+..|...++++.+.++. |+.++.++|||-. +++|+..++.+.|.+..
T Consensus 263 ~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~~~~tsdAGPn--v~vl~~~~~~~~v~~~l 340 (414)
T 3f0n_A 263 FQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAGPN--AVIFTLEDTVAEFVAAV 340 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSSSC--EEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCceEEEEECCCCC--EEEEEecccHHHHHHHH
Confidence 448999888887777775543 356677899899999887763 8889999999998 55655544455565544
Q ss_pred H
Q 013834 397 S 397 (435)
Q Consensus 397 ~ 397 (435)
+
T Consensus 341 ~ 341 (414)
T 3f0n_A 341 R 341 (414)
T ss_dssp H
T ss_pred H
Confidence 3
No 27
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=98.84 E-value=1.2e-07 Score=96.23 Aligned_cols=73 Identities=11% Similarity=0.086 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHhccccC--CCCCCCHHHHHHHHHHHhc--C-C-ceeeeecCCCccceeEEEecCCChhHHHHHH
Q 013834 323 LLGARDAMLGIRYHMRLMGEAA--GVPIEPESQTQLLNATMDM--E-G-VLLAGVPGAGGFDAVFAVTLGDSGSNVTKAW 396 (435)
Q Consensus 323 ~~~l~~~i~~~r~lLr~lg~~s--gv~Iepp~lt~Lld~a~~~--~-G-vlgakv~GAGGGD~iiaL~~~~~~~~l~~~w 396 (435)
+..+++.|.+++..|..+.... ......|...++++.+.++ . | +.++.++|||-- +++|+.++..+.+.+.|
T Consensus 237 ~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~Ga~~~a~~SGaGPt--v~~l~~~~~~~~v~~~l 314 (380)
T 2hke_A 237 FATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAGAN--CFLFVLKEDLPEAVAML 314 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSSSC--EEEEEEGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcCCcceEEEECCCCc--EEEEECHHHHHHHHHHH
Confidence 3388999988777777644322 2334567778888776544 2 5 778999999875 78887654455566555
Q ss_pred H
Q 013834 397 S 397 (435)
Q Consensus 397 ~ 397 (435)
+
T Consensus 315 ~ 315 (380)
T 2hke_A 315 M 315 (380)
T ss_dssp H
T ss_pred H
Confidence 4
Done!