BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013835
(435 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H4I|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products
pdb|3H4T|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products - Gtfah1 In Complex With Udp-2f-Glc
Length = 404
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 110/431 (25%), Positives = 176/431 (40%), Gaps = 76/431 (17%)
Query: 5 GTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLDMV-----KNKGFLP 59
G+RGD +P VA+ RL++ G R+ ++ + G+ P+ + G LP
Sbjct: 9 GSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELP 68
Query: 60 SGPSEIPVQRNQMKEII---YSLLPACRDPDLDSGIAFKADAIIAN---PPAYGHVHVAE 113
G +E+ + E++ + +PA + DA++ P A +AE
Sbjct: 69 PGAAEV------VTEVVAEWFDKVPAAIE---------GCDAVVTTGLLPAAVAVRSMAE 113
Query: 114 ALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQIVDSLIWLGIRDMINDVRKKKL 173
L IP P P S+ ++ + Q D L D +N + +
Sbjct: 114 KLGIPYRYTVLSP----DHLPSEQSQAER----DMYNQGADRLFG----DAVNS-HRASI 160
Query: 174 KLRPVTYLSGSQGFDSDVPHGYIWSPHLVP-------KPKDWGPKVDVVGFCFLD---LA 223
L PV +L +D +GY P L +P D G V + D L+
Sbjct: 161 GLPPVEHL-----YD----YGYTDQPWLAADPVLSPLRPTDLG-TVQTGAWILPDQRPLS 210
Query: 224 SNYEPPESLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLG 283
+ E +L AGS P+Y+GFGS P P + ++ +EA G+R +++ GW GLG
Sbjct: 211 AELE------GFLRAGSPPVYVGFGSGPA--PAEAARVAIEAVRAQGRRVVLSSGWAGLG 262
Query: 284 NLAEPKDSIYLLDNIPHDWLFLQCKXXXXXXXXXXXXXXLRAACPTTIVPFFGDQPFWGE 343
+ E D + ++ + H LF + RA P +VP DQP++
Sbjct: 263 RIDEGDDCL-VVGEVNHQVLFGRVAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAG 321
Query: 344 RVHARGVGPP---PIPVDEFSLPKLINAINFMLDPKVKERAVELAEAMEKEDGVTGAVKA 400
RV GVG P P E L A+ L P ++ RA +A + + DG T A K
Sbjct: 322 RVADLGVGVAHDGPTPTVE----SLSAALATALTPGIRARAAAVAGTI-RTDGTTVAAKL 376
Query: 401 FFKHYSRSKTQ 411
+ SR ++
Sbjct: 377 LLEAISRQRSS 387
>pdb|1RRV|A Chain A, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin.
pdb|1RRV|B Chain B, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin
Length = 416
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 105/411 (25%), Positives = 164/411 (39%), Gaps = 50/411 (12%)
Query: 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLD----MVKNKGFL 58
+ GTRGDV+ VA+ RL+ G + R+ ++ + G+ P+ M+ +G
Sbjct: 7 VCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAEVGVPHVPVGLPQHMMLQEGMP 66
Query: 59 PSGPSEIPVQRNQMKEIIYSLLPACRDPDLDSGIAFKADAIIAN---PPAYGHVHVAEAL 115
P P E E+ + +P G A A++A A G VAE L
Sbjct: 67 PPPPEEEQRLAAMTVEMQFDAVP---------GAAEGCAAVVAVGDLAAATGVRSVAEKL 117
Query: 116 KIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQIVD-SLIWLGIRDMINDV------ 168
+P F+++P PH +P + + D ++W D
Sbjct: 118 GLPF--FYSVPSPVYLASPHLPPAYDEPT----TPGVTDIRVLWEERAARFADRYGPTLN 171
Query: 169 -RKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKP--KDWGPKVDVVGFCFLDLASN 225
R+ ++ L PV + G +G+ P L P P VD V L+
Sbjct: 172 RRRAEIGLPPVEDVFG---------YGHGERPLLAADPVLAPLQPDVDAVQTGAWLLSDE 222
Query: 226 YEPPESLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNL 285
P L +L AGS P++IGFGS + ++ VEA G+R I+++GW L L
Sbjct: 223 RPLPPELEAFLAAGSPPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTEL-VL 281
Query: 286 AEPKDSIYLLDNIPHDWLFLQCKXXXXXXXXXXXXXXLRAACPTTIVPFFGDQPFWGERV 345
+ +D + +D + LF + RA P ++P DQP++ RV
Sbjct: 282 PDDRDDCFAIDEVNFQALFRRVAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRV 341
Query: 346 HARGVGPP---PIPVDEFSLPKLINAINFMLDPKVKERAVELAEAMEKEDG 393
A G+G P P E L A+ +L P+ + RA E M DG
Sbjct: 342 AALGIGVAHDGPTPTFE----SLSAALTTVLAPETRARA-EAVAGMVLTDG 387
>pdb|1PN3|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PN3|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PNV|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
pdb|1PNV|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
Length = 404
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 102/434 (23%), Positives = 174/434 (40%), Gaps = 80/434 (18%)
Query: 5 GTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLDMV-----KNKGFLP 59
G+RGD +P VA+ RL++ G R+ ++ + G+ P+ + G LP
Sbjct: 9 GSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELP 68
Query: 60 SGPSEIPVQRNQMKEII---YSLLPACRDPDLDSGIAFKADAIIAN---PPAYGHVHVAE 113
G +E+ + E++ + +PA + DA++ P A +AE
Sbjct: 69 PGAAEV------VTEVVAEWFDKVPAAIE---------GCDAVVTTGLLPAAVAVRSMAE 113
Query: 114 ALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQIVDSLIWLGIRDMINDVRKKKL 173
L IP P P S+ ++ + Q D L D +N + +
Sbjct: 114 KLGIPYRYTVLSP----DHLPSEQSQAER----DMYNQGADRLFG----DAVNS-HRASI 160
Query: 174 KLRPVTYLSGSQGFDSDVPHGYIWSPHLVP-------KPKDWGPKVDVVGFCFLDLASNY 226
L PV +L +D +GY P L +P D G V + D
Sbjct: 161 GLPPVEHL-----YD----YGYTDQPWLAADPVLSPLRPTDLG-TVQTGAWILPD----- 205
Query: 227 EPPES--LVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGN 284
E P S L +L AGS P+Y+GFGS ++ ++A +G+R ++++GW +
Sbjct: 206 ERPLSAELEAFLAAGSTPVYVGFGSSSRPATADAAKMAIKAVRASGRRIVLSRGW---AD 262
Query: 285 LAEPKDS--IYLLDNIPHDWLFLQCKXXXXXXXXXXXXXXLRAACP----TTIVPFFGDQ 338
L P D +++ + LF + +RA P +V +Q
Sbjct: 263 LVLPDDGADCFVVGEVNLQELFGRVAAAIHHDSAGTTLLAMRAGIPQIVVRRVVDNVVEQ 322
Query: 339 PFWGERVHARGVGPP---PIPVDEFSLPKLINAINFMLDPKVKERAVELAEAMEKEDGVT 395
+ +RV GVG P+P ++ L A++ L P+++ RA +A+ + + DG T
Sbjct: 323 AYHADRVAELGVGVAVDGPVP----TIDSLSAALDTALAPEIRARATTVADTI-RADGTT 377
Query: 396 GAVKAFFKHYSRSK 409
A + F S K
Sbjct: 378 VAAQLLFDAVSLEK 391
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 15/183 (8%)
Query: 232 LVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDS 291
L +L+AG P+Y+GFGSL P ++ ++A G+R I+++GW +L P D
Sbjct: 230 LAAFLDAGPPPVYLGFGSL--GAPADAVRVAIDAIRAHGRRVILSRGW---ADLVLPDDG 284
Query: 292 --IYLLDNIPHDWLFLQCKXXXXXXXXXXXXXXLRAACPTTIVPFFGDQPFWGERVHARG 349
+ + + H LF + RA P ++P DQP++ RV G
Sbjct: 285 ADCFAIGEVNHQVLFGRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELG 344
Query: 350 VGPP---PIPVDEFSLPKLINAINFMLDPKVKERAVELAEAMEKEDGVTGAVKAFFKHYS 406
VG PIP + L A+ L P+ RA +A + + DG A + S
Sbjct: 345 VGVAHDGPIP----TFDSLSAALATALTPETHARATAVAGTI-RTDGAAVAARLLLDAVS 399
Query: 407 RSK 409
R K
Sbjct: 400 REK 402
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLDMVKNKGFLPS 60
+ G+RGD +P VA+ R++D G VR+ + + + G+ P+
Sbjct: 5 LATCGSRGDTEPLVALAVRVRDLGADVRMCAPPDCAERLAEVGVPHVPV----------- 53
Query: 61 GPS-EIPVQRNQ 71
GPS P+QR +
Sbjct: 54 GPSARAPIQRAK 65
>pdb|1YVY|A Chain A, Crystal Strucutre Of Anaerobiospirillum Succiniciproducens
Phosphoenolpyruvate Carboxykinase
pdb|1YVY|B Chain B, Crystal Strucutre Of Anaerobiospirillum Succiniciproducens
Phosphoenolpyruvate Carboxykinase
pdb|1YTM|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase Of
Anaerobiospirillum Succiniciproducens Complexed With
Atp, Oxalate, Magnesium And Manganese Ions
pdb|1YTM|B Chain B, Crystal Structure Of Phosphoenolpyruvate Carboxykinase Of
Anaerobiospirillum Succiniciproducens Complexed With
Atp, Oxalate, Magnesium And Manganese Ions
Length = 532
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 246 GFGSLPVQEPEKMTQIIVEAFEQTGQRG-IINKGWGGLGNLAEPKDSIYLLDNI 298
F +LP P K +++V+ E +G + ++N GW G G KD+ ++D I
Sbjct: 406 AFLTLP---PTKYAEVLVKRMEASGAKAYLVNTGWNGTGKRISIKDTRGIIDAI 456
>pdb|3E6U|A Chain A, Crystal Structure Of Human Lancl1
pdb|3E6U|C Chain C, Crystal Structure Of Human Lancl1
pdb|3E6U|B Chain B, Crystal Structure Of Human Lancl1
pdb|3E6U|D Chain D, Crystal Structure Of Human Lancl1
pdb|3E73|A Chain A, Crystal Structure Of Human Lancl1 Complexed With Gsh
pdb|3E73|B Chain B, Crystal Structure Of Human Lancl1 Complexed With Gsh
Length = 411
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 41/107 (38%), Gaps = 10/107 (9%)
Query: 210 PKVDVVGFCFLDLASNYEPP------ESLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIV 263
P VD V C L S PP + LV W IY+ + V EK
Sbjct: 258 PSVDYV--CQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAY 315
Query: 264 EAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHD--WLFLQCK 308
+ + Q G++ KG+G A + L N+ D +L+ CK
Sbjct: 316 QCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACK 362
>pdb|3UBU|B Chain B, Crystal Structure Of Agkisacucetin, A Gpib-Binding Snaclec
(Snake C- Type Lectin) That Inhibits Platelet
Length = 126
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Query: 148 LSYQIVD-SLIWLGIRDMINDVRKK 171
L+Y I+D SLIW+G+ +M ND +++
Sbjct: 56 LAYPILDLSLIWMGLSNMWNDCKRE 80
>pdb|3BVE|A Chain A, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVE|B Chain B, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVE|C Chain C, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVE|D Chain D, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVE|E Chain E, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVE|F Chain F, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVF|A Chain A, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVF|B Chain B, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVF|C Chain C, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVF|D Chain D, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVF|E Chain E, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVF|F Chain F, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVI|A Chain A, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVI|B Chain B, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVI|C Chain C, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVI|D Chain D, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVI|E Chain E, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVI|F Chain F, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVK|A Chain A, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVK|B Chain B, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVK|C Chain C, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVK|D Chain D, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVK|E Chain E, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVK|F Chain F, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVL|A Chain A, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVL|B Chain B, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVL|C Chain C, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVL|D Chain D, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVL|E Chain E, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
pdb|3BVL|F Chain F, Structural Basis For The Iron Uptake Mechanism Of
Helicobacter Pylori Ferritin
Length = 181
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 217 FCFLDLASNYEPPESLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQ 268
F F A YE + L+ +L + P+ + S P + E +TQI +A+E
Sbjct: 56 FLFDHAAEEYEHAKKLIIFLNENNVPVQLTSISAPEHKFEGLTQIFQKAYEH 107
>pdb|1L1Y|A Chain A, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|B Chain B, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|C Chain C, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|D Chain D, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|E Chain E, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|F Chain F, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|A Chain A, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|B Chain B, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|C Chain C, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|D Chain D, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|E Chain E, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|F Chain F, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
Length = 678
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 60 SGPSEIPVQR-NQMKEIIYSLLPACRDPDL-----DSGIAFKA-DAIIANPPAYGHVHVA 112
+GP++ P + K++ L +DP D GI + + + +I P YGHV +
Sbjct: 27 AGPTKAPTKDGTSYKDLFLELYGKIKDPKNGYFSPDEGIPYHSIETLIVEAPDYGHVTTS 86
Query: 113 EALKIPIHI 121
EA + +
Sbjct: 87 EAFSYYVWL 95
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 1 MLIVG-TRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYP 48
++I G + G V P V + L+ GH V +A N V AGL F P
Sbjct: 19 LVIAGCSEGFVXPLVPLSWALRAAGHEVLVAASENXGPTVTGAGLPFAP 67
>pdb|3EGM|A Chain A, Structural Basis Of Iron Transport Gating In Helicobacter
Pylori Ferritin
pdb|3EGM|B Chain B, Structural Basis Of Iron Transport Gating In Helicobacter
Pylori Ferritin
pdb|3EGM|C Chain C, Structural Basis Of Iron Transport Gating In Helicobacter
Pylori Ferritin
pdb|3EGM|D Chain D, Structural Basis Of Iron Transport Gating In Helicobacter
Pylori Ferritin
pdb|3EGM|E Chain E, Structural Basis Of Iron Transport Gating In Helicobacter
Pylori Ferritin
pdb|3EGM|F Chain F, Structural Basis Of Iron Transport Gating In Helicobacter
Pylori Ferritin
Length = 181
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 217 FCFLDLASNYEPPESLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQ 268
F F A YE + L+ +L + P+ + S P + E +TQI +A+E
Sbjct: 56 FLFDHAAEEYEHAKKLIIFLNENNVPVQLTSISAPEHKFEGLTQIFQKAYEH 107
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 1 MLIVG-TRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYP 48
++I G + G V P V + L+ GH V +A N V AGL F P
Sbjct: 18 LVIAGCSEGFVXPLVPLSWALRAAGHEVLVAASENXGPTVTGAGLPFAP 66
>pdb|2PY7|X Chain X, Crystal Structure Of E. Coli Phosphoenolpyruvate
Carboxykinase Mutant Lys213ser Complexed With
Atp-mg2+-mn2+
Length = 540
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 255 PEKMTQIIVEAFEQTG-QRGIINKGWGGLGNLAEPKDSIYLLDNI 298
P + +++V+ + G Q ++N GW G G KD+ ++D I
Sbjct: 418 PTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRISIKDTRAIIDAI 462
>pdb|1AYL|A Chain A, Phosphoenolpyruvate Carboxykinase
Length = 541
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 255 PEKMTQIIVEAFEQTG-QRGIINKGWGGLGNLAEPKDSIYLLDNI 298
P + +++V+ + G Q ++N GW G G KD+ ++D I
Sbjct: 418 PTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRISIKDTRAIIDAI 462
>pdb|1K3C|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp,
Alf3 And Pyruvate
pdb|1K3D|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp And
Alf3
pdb|1OS1|A Chain A, Structure Of Phosphoenolpyruvate Carboxykinase Complexed
With Atp,Mg, Ca And Pyruvate.
pdb|2OLQ|A Chain A, How Does An Enzyme Recognize Co2?
pdb|2OLR|A Chain A, Crystal Structure Of Escherichia Coli Phosphoenolpyruvate
Carboxykinase Complexed With Carbon Dioxide, Mg2+, Atp
pdb|1AQ2|A Chain A, Phosphoenolpyruvate Carboxykinase
pdb|2PXZ|X Chain X, E. Coli Phosphoenolpyruvate Carboxykinase (Pepck)
Complexed With Atp, Mg2+, Mn2+, Carbon Dioxide And
Oxaloacetate
Length = 540
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 255 PEKMTQIIVEAFEQTG-QRGIINKGWGGLGNLAEPKDSIYLLDNI 298
P + +++V+ + G Q ++N GW G G KD+ ++D I
Sbjct: 418 PTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRISIKDTRAIIDAI 462
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,923,088
Number of Sequences: 62578
Number of extensions: 604176
Number of successful extensions: 1240
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1222
Number of HSP's gapped (non-prelim): 23
length of query: 435
length of database: 14,973,337
effective HSP length: 102
effective length of query: 333
effective length of database: 8,590,381
effective search space: 2860596873
effective search space used: 2860596873
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)