Query 013835
Match_columns 435
No_of_seqs 129 out of 1375
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 07:52:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013835.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013835hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03784 GT1_Gtf_like This fami 100.0 3.6E-49 7.7E-54 379.6 37.8 390 1-403 5-400 (401)
2 PHA03392 egt ecdysteroid UDP-g 100.0 2.9E-49 6.2E-54 383.1 35.2 416 2-427 27-485 (507)
3 TIGR01426 MGT glycosyltransfer 100.0 2.7E-46 5.8E-51 357.9 32.7 381 2-406 1-391 (392)
4 PF00201 UDPGT: UDP-glucoronos 100.0 1.2E-48 2.5E-53 386.0 2.0 410 5-428 8-462 (500)
5 PLN02670 transferase, transfer 100.0 1.8E-44 3.8E-49 343.7 22.7 390 1-409 11-467 (472)
6 COG1819 Glycosyl transferases, 100.0 6.8E-44 1.5E-48 336.6 23.8 389 1-409 6-403 (406)
7 PLN02208 glycosyltransferase f 100.0 1.7E-42 3.6E-47 329.4 32.0 385 1-406 9-438 (442)
8 PLN02562 UDP-glycosyltransfera 100.0 1.9E-42 4.2E-47 330.9 30.9 381 1-405 11-447 (448)
9 PLN00414 glycosyltransferase f 100.0 1.1E-42 2.4E-47 331.0 19.2 382 1-406 9-439 (446)
10 PLN02448 UDP-glycosyltransfera 100.0 8.4E-42 1.8E-46 329.1 24.0 383 1-407 15-457 (459)
11 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.2E-41 2.7E-46 326.6 22.8 390 1-409 14-473 (477)
12 PLN02210 UDP-glucosyl transfer 100.0 9.7E-42 2.1E-46 326.4 20.8 375 1-405 13-453 (456)
13 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.4E-41 3.1E-46 323.9 20.2 379 1-405 12-448 (451)
14 PLN03007 UDP-glucosyltransfera 100.0 1.3E-39 2.8E-44 315.5 34.1 388 1-406 10-479 (482)
15 PLN02764 glycosyltransferase f 100.0 5.2E-41 1.1E-45 317.4 20.6 381 1-408 10-446 (453)
16 PLN02555 limonoid glucosyltran 100.0 9.5E-41 2.1E-45 319.3 22.6 388 1-408 12-470 (480)
17 PLN02207 UDP-glycosyltransfera 100.0 3.6E-40 7.7E-45 313.9 25.8 385 1-406 8-464 (468)
18 PLN02992 coniferyl-alcohol glu 100.0 4.5E-40 9.7E-45 313.8 26.0 368 1-390 10-446 (481)
19 PLN02173 UDP-glucosyl transfer 100.0 2.9E-40 6.3E-45 313.4 22.3 371 1-405 10-446 (449)
20 PLN02554 UDP-glycosyltransfera 100.0 4.6E-40 9.9E-45 318.2 23.9 384 1-406 7-477 (481)
21 PLN03004 UDP-glycosyltransfera 100.0 1.2E-39 2.6E-44 309.4 22.5 368 1-390 8-440 (451)
22 PLN02152 indole-3-acetate beta 100.0 3.5E-39 7.5E-44 306.6 23.1 376 1-403 8-452 (455)
23 PLN00164 glucosyltransferase; 100.0 4.9E-39 1.1E-43 309.7 22.7 377 1-408 8-474 (480)
24 PLN02534 UDP-glycosyltransfera 100.0 8.9E-38 1.9E-42 299.3 30.4 387 1-408 13-487 (491)
25 PLN02167 UDP-glycosyltransfera 100.0 1.3E-38 2.9E-43 307.5 20.2 386 1-406 8-471 (475)
26 PLN03015 UDP-glucosyl transfer 100.0 1.3E-37 2.7E-42 295.2 26.1 378 1-404 8-465 (470)
27 KOG1192 UDP-glucuronosyl and U 100.0 3E-34 6.6E-39 283.6 29.4 407 1-409 10-458 (496)
28 PRK12446 undecaprenyldiphospho 100.0 2.9E-29 6.4E-34 234.3 25.6 331 1-403 6-351 (352)
29 PF13528 Glyco_trans_1_3: Glyc 100.0 1.1E-27 2.3E-32 223.3 22.3 305 3-372 8-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 100.0 2.1E-27 4.5E-32 218.8 22.5 332 2-405 6-355 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 7.3E-25 1.6E-29 203.6 20.3 300 4-377 8-317 (321)
32 PRK00726 murG undecaprenyldiph 99.9 3.3E-21 7.2E-26 182.5 24.7 334 2-406 7-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.9 7E-21 1.5E-25 180.0 23.0 330 2-399 5-349 (350)
34 COG4671 Predicted glycosyl tra 99.9 3.7E-20 8E-25 162.3 19.0 340 6-409 21-393 (400)
35 TIGR01133 murG undecaprenyldip 99.8 5.6E-19 1.2E-23 166.9 22.9 102 299-401 243-348 (348)
36 TIGR00215 lpxB lipid-A-disacch 99.8 3.6E-19 7.9E-24 168.8 17.4 330 1-403 10-384 (385)
37 TIGR03590 PseG pseudaminic aci 99.8 7.8E-18 1.7E-22 152.4 19.7 252 6-345 13-279 (279)
38 PRK13609 diacylglycerol glucos 99.8 1.5E-17 3.2E-22 158.9 17.9 161 240-408 202-372 (380)
39 PF04101 Glyco_tran_28_C: Glyc 99.7 2.5E-19 5.5E-24 150.1 1.4 140 242-382 1-152 (167)
40 PRK00025 lpxB lipid-A-disaccha 99.7 1.6E-16 3.4E-21 151.9 17.8 162 241-407 187-377 (380)
41 PRK13608 diacylglycerol glucos 99.7 8.5E-16 1.8E-20 146.7 18.3 162 239-408 201-372 (391)
42 cd03814 GT1_like_2 This family 99.7 3.2E-14 7E-19 134.8 27.1 157 239-405 195-363 (364)
43 PLN02605 monogalactosyldiacylg 99.7 4.4E-15 9.5E-20 141.6 20.6 162 240-406 206-380 (382)
44 TIGR03492 conserved hypothetic 99.6 5.4E-14 1.2E-18 133.6 21.2 161 239-405 204-396 (396)
45 COG3980 spsG Spore coat polysa 99.6 4.4E-14 9.5E-19 120.7 16.8 285 6-396 14-315 (318)
46 PLN02871 UDP-sulfoquinovose:DA 99.6 1.5E-12 3.3E-17 127.6 24.2 153 241-403 263-429 (465)
47 PF03033 Glyco_transf_28: Glyc 99.5 6.1E-15 1.3E-19 119.7 5.8 130 1-130 3-135 (139)
48 cd03794 GT1_wbuB_like This fam 99.5 4.3E-12 9.3E-17 121.2 24.0 155 239-401 218-393 (394)
49 cd03823 GT1_ExpE7_like This fa 99.5 1E-12 2.2E-17 124.2 18.2 153 240-405 190-357 (359)
50 cd03800 GT1_Sucrose_synthase T 99.5 1.6E-11 3.4E-16 118.2 26.1 154 239-402 218-397 (398)
51 TIGR03449 mycothiol_MshA UDP-N 99.5 2.5E-11 5.4E-16 117.2 26.2 161 240-407 218-401 (405)
52 cd03818 GT1_ExpC_like This fam 99.5 2.3E-11 5E-16 116.9 25.2 105 289-400 280-393 (396)
53 cd03816 GT1_ALG1_like This fam 99.5 4.4E-11 9.5E-16 115.4 26.4 145 240-397 231-406 (415)
54 cd03786 GT1_UDP-GlcNAc_2-Epime 99.4 4.4E-12 9.6E-17 120.5 17.5 151 240-401 198-362 (363)
55 TIGR00236 wecB UDP-N-acetylglu 99.4 6.8E-11 1.5E-15 112.4 24.1 153 241-404 198-364 (365)
56 cd03801 GT1_YqgM_like This fam 99.4 9.1E-11 2E-15 110.9 24.3 156 240-405 198-373 (374)
57 cd03808 GT1_cap1E_like This fa 99.4 1.3E-10 2.9E-15 109.4 24.9 156 239-402 186-358 (359)
58 cd03819 GT1_WavL_like This fam 99.4 3.2E-10 7E-15 107.3 27.3 142 240-389 184-346 (355)
59 cd04962 GT1_like_5 This family 99.4 2E-10 4.3E-15 109.5 24.8 160 240-406 196-369 (371)
60 cd03817 GT1_UGDG_like This fam 99.4 4.2E-11 9.2E-16 113.6 19.8 143 240-391 201-360 (374)
61 PRK10307 putative glycosyl tra 99.4 2.5E-10 5.5E-15 110.4 25.0 158 240-407 228-407 (412)
62 TIGR02468 sucrsPsyn_pln sucros 99.4 2.7E-10 5.9E-15 116.9 26.0 167 231-407 469-670 (1050)
63 TIGR02472 sucr_P_syn_N sucrose 99.4 1.1E-09 2.4E-14 106.5 29.0 156 240-405 247-438 (439)
64 cd03820 GT1_amsD_like This fam 99.4 1.1E-10 2.4E-15 109.5 20.8 153 240-402 177-347 (348)
65 cd03798 GT1_wlbH_like This fam 99.4 2.6E-10 5.5E-15 108.1 23.2 157 240-405 201-374 (377)
66 cd03795 GT1_like_4 This family 99.3 4.1E-10 8.9E-15 106.6 24.2 141 239-389 189-347 (357)
67 PF04007 DUF354: Protein of un 99.3 4.1E-10 8.9E-15 103.1 22.9 313 6-405 9-334 (335)
68 cd03825 GT1_wcfI_like This fam 99.3 6.4E-10 1.4E-14 105.6 25.3 112 288-406 242-363 (365)
69 cd03792 GT1_Trehalose_phosphor 99.3 3.4E-09 7.4E-14 101.0 26.9 158 240-406 189-370 (372)
70 cd03821 GT1_Bme6_like This fam 99.3 1.2E-09 2.6E-14 103.7 23.0 154 239-402 201-374 (375)
71 PRK05749 3-deoxy-D-manno-octul 99.3 1.8E-09 3.8E-14 104.9 24.5 100 303-407 316-423 (425)
72 cd03805 GT1_ALG2_like This fam 99.3 2.9E-09 6.2E-14 102.3 25.7 153 239-399 209-390 (392)
73 TIGR03088 stp2 sugar transfera 99.3 5.8E-09 1.3E-13 99.6 27.6 160 240-406 193-371 (374)
74 cd03796 GT1_PIG-A_like This fa 99.3 1.1E-09 2.4E-14 105.3 22.6 158 240-407 192-367 (398)
75 cd04951 GT1_WbdM_like This fam 99.2 2E-09 4.3E-14 102.0 22.4 155 240-406 187-359 (360)
76 cd04955 GT1_like_6 This family 99.2 3E-09 6.5E-14 100.9 23.6 150 242-405 194-362 (363)
77 cd03822 GT1_ecORF704_like This 99.2 3.6E-09 7.8E-14 100.3 23.7 157 240-405 184-365 (366)
78 cd05844 GT1_like_7 Glycosyltra 99.2 1.5E-09 3.1E-14 103.4 21.0 156 241-403 188-366 (367)
79 PLN00142 sucrose synthase 99.2 3.4E-08 7.5E-13 99.7 28.1 159 240-408 572-771 (815)
80 cd03802 GT1_AviGT4_like This f 99.2 3.6E-09 7.9E-14 99.2 20.2 148 241-405 171-334 (335)
81 cd03807 GT1_WbnK_like This fam 99.2 9.7E-09 2.1E-13 97.0 22.8 157 240-405 192-364 (365)
82 cd03812 GT1_CapH_like This fam 99.1 3.2E-09 6.8E-14 100.6 18.2 137 239-386 190-343 (358)
83 PLN02275 transferase, transfer 99.1 3E-09 6.4E-14 101.2 17.4 95 270-373 261-371 (371)
84 TIGR02149 glgA_Coryne glycogen 99.1 1.7E-07 3.7E-12 89.9 29.3 159 240-406 200-385 (388)
85 cd03809 GT1_mtfB_like This fam 99.1 5.1E-09 1.1E-13 99.2 18.3 154 239-402 193-364 (365)
86 TIGR02470 sucr_synth sucrose s 99.1 5.1E-08 1.1E-12 98.4 25.4 158 240-407 549-747 (784)
87 cd03799 GT1_amsK_like This is 99.1 4E-09 8.6E-14 99.7 16.7 151 240-398 178-352 (355)
88 PRK09922 UDP-D-galactose:(gluc 99.1 3.5E-09 7.5E-14 100.4 15.6 158 240-405 179-357 (359)
89 TIGR03568 NeuC_NnaA UDP-N-acet 99.1 7.2E-08 1.6E-12 91.0 24.1 131 240-381 201-345 (365)
90 PRK15179 Vi polysaccharide bio 99.1 1.1E-07 2.3E-12 95.9 25.7 158 241-406 517-692 (694)
91 cd03811 GT1_WabH_like This fam 99.0 4.5E-08 9.7E-13 91.8 19.8 135 239-383 187-341 (353)
92 TIGR02095 glgA glycogen/starch 98.9 2.3E-07 5E-12 91.4 21.3 158 240-406 290-471 (473)
93 PRK14089 ipid-A-disaccharide s 98.9 1.4E-08 3.1E-13 93.9 11.5 157 240-403 167-346 (347)
94 PRK00654 glgA glycogen synthas 98.9 2.6E-07 5.7E-12 90.6 21.0 154 240-407 281-462 (466)
95 PRK15490 Vi polysaccharide bio 98.9 1.6E-07 3.4E-12 90.8 18.4 159 242-407 399-575 (578)
96 cd03791 GT1_Glycogen_synthase_ 98.9 3.6E-07 7.8E-12 90.2 21.3 161 240-406 295-475 (476)
97 PLN02846 digalactosyldiacylgly 98.9 1E-06 2.2E-11 84.6 23.1 151 242-410 229-394 (462)
98 cd04950 GT1_like_1 Glycosyltra 98.9 6.9E-07 1.5E-11 85.1 21.9 151 239-406 203-370 (373)
99 PF02350 Epimerase_2: UDP-N-ac 98.8 1E-08 2.3E-13 95.6 8.9 153 239-401 179-345 (346)
100 PRK15427 colanic acid biosynth 98.8 3.3E-08 7.1E-13 95.1 12.5 157 240-406 221-404 (406)
101 PRK15484 lipopolysaccharide 1, 98.8 9E-08 1.9E-12 91.4 14.8 162 240-407 192-377 (380)
102 PLN02501 digalactosyldiacylgly 98.8 4.9E-07 1.1E-11 88.8 18.3 144 246-407 551-709 (794)
103 KOG3349 Predicted glycosyltran 98.8 2.9E-08 6.2E-13 76.9 7.6 113 241-357 4-134 (170)
104 cd03806 GT1_ALG11_like This fa 98.7 5.7E-06 1.2E-10 80.0 23.8 137 240-387 236-406 (419)
105 COG1519 KdtA 3-deoxy-D-manno-o 98.7 1.1E-05 2.4E-10 74.5 23.7 108 290-403 300-417 (419)
106 PLN02316 synthase/transferase 98.7 2.5E-06 5.4E-11 88.6 20.9 161 241-407 840-1033(1036)
107 PF02684 LpxB: Lipid-A-disacch 98.7 1.1E-06 2.5E-11 81.8 16.2 179 209-390 152-356 (373)
108 PRK10125 putative glycosyl tra 98.6 2E-06 4.4E-11 82.5 17.4 134 260-406 259-403 (405)
109 COG0381 WecB UDP-N-acetylgluco 98.6 1.1E-05 2.3E-10 73.9 20.7 158 239-407 203-374 (383)
110 cd01635 Glycosyltransferase_GT 98.6 8.5E-07 1.9E-11 77.8 13.1 50 288-337 159-216 (229)
111 cd04946 GT1_AmsK_like This fam 98.6 6.3E-07 1.4E-11 86.4 12.6 155 240-400 229-404 (407)
112 cd03804 GT1_wbaZ_like This fam 98.6 9.6E-08 2.1E-12 90.3 6.5 136 242-387 196-340 (351)
113 TIGR03087 stp1 sugar transfera 98.6 1.2E-06 2.5E-11 84.4 13.8 157 241-407 224-396 (397)
114 PRK01021 lpxB lipid-A-disaccha 98.5 1.3E-05 2.9E-10 78.2 19.5 176 208-387 379-584 (608)
115 PF00534 Glycos_transf_1: Glyc 98.5 1.7E-07 3.7E-12 78.8 6.0 142 239-387 13-171 (172)
116 COG5017 Uncharacterized conser 98.5 1.3E-06 2.7E-11 66.6 9.0 109 243-356 2-122 (161)
117 TIGR02918 accessory Sec system 98.5 1.7E-06 3.7E-11 84.9 12.6 162 241-406 319-498 (500)
118 COG1817 Uncharacterized protei 98.4 7.5E-05 1.6E-09 65.9 20.5 322 7-407 10-342 (346)
119 cd03813 GT1_like_3 This family 98.4 1.1E-05 2.5E-10 79.3 16.8 159 240-405 292-474 (475)
120 cd04949 GT1_gtfA_like This fam 98.3 4.9E-06 1.1E-10 79.4 11.5 153 240-398 203-369 (372)
121 PHA01630 putative group 1 glyc 98.2 4E-05 8.6E-10 71.4 14.6 108 296-407 196-330 (331)
122 PF13844 Glyco_transf_41: Glyc 98.2 3.2E-05 6.9E-10 73.8 13.5 163 239-406 283-465 (468)
123 PLN02949 transferase, transfer 98.2 3.8E-05 8.3E-10 74.7 13.7 155 241-406 268-455 (463)
124 PRK14098 glycogen synthase; Pr 98.1 2.1E-05 4.5E-10 77.4 11.2 161 241-407 307-485 (489)
125 COG0763 LpxB Lipid A disacchar 98.1 0.00017 3.7E-09 66.1 14.9 191 212-406 158-380 (381)
126 PRK09814 beta-1,6-galactofuran 98.0 0.00012 2.7E-09 68.4 13.6 122 270-403 190-331 (333)
127 PHA01633 putative glycosyl tra 97.9 0.00027 5.9E-09 65.3 12.9 125 241-373 148-305 (335)
128 PF13692 Glyco_trans_1_4: Glyc 97.8 2.3E-05 5E-10 62.8 3.8 121 242-373 3-133 (135)
129 PRK14099 glycogen synthase; Pr 97.8 0.0002 4.3E-09 70.5 10.8 158 242-407 296-478 (485)
130 PF06258 Mito_fiss_Elm1: Mitoc 97.6 0.0074 1.6E-07 55.4 17.8 97 240-336 146-259 (311)
131 KOG1111 N-acetylglucosaminyltr 97.6 0.0075 1.6E-07 54.6 16.5 92 242-333 196-302 (426)
132 PLN02939 transferase, transfer 97.5 0.0012 2.6E-08 68.2 12.7 159 241-407 779-966 (977)
133 COG3914 Spy Predicted O-linked 97.4 0.0034 7.4E-08 60.3 13.5 159 241-406 430-612 (620)
134 TIGR03713 acc_sec_asp1 accesso 97.3 0.0032 6.9E-08 62.2 12.8 103 290-404 409-518 (519)
135 KOG2941 Beta-1,4-mannosyltrans 97.3 0.049 1.1E-06 49.3 18.5 123 239-373 253-403 (444)
136 TIGR02400 trehalose_OtsA alpha 97.3 0.012 2.7E-07 57.3 16.1 102 293-405 339-454 (456)
137 cd03789 GT1_LPS_heptosyltransf 97.2 0.039 8.4E-07 50.2 17.4 41 2-42 5-47 (279)
138 COG0438 RfaG Glycosyltransfera 97.2 0.012 2.6E-07 54.7 14.4 155 242-406 200-375 (381)
139 cd03788 GT1_TPS Trehalose-6-Ph 97.1 0.0096 2.1E-07 58.3 13.8 101 293-403 344-457 (460)
140 TIGR02193 heptsyl_trn_I lipopo 96.9 0.15 3.2E-06 47.4 19.1 126 240-373 179-319 (319)
141 PF13524 Glyco_trans_1_2: Glyc 96.8 0.0061 1.3E-07 44.9 7.0 80 313-401 9-90 (92)
142 PF13477 Glyco_trans_4_2: Glyc 96.7 0.023 5.1E-07 45.4 10.5 88 13-122 13-105 (139)
143 TIGR02195 heptsyl_trn_II lipop 96.5 0.74 1.6E-05 43.1 21.8 93 239-332 173-276 (334)
144 PRK10916 ADP-heptose:LPS hepto 96.4 0.23 5E-06 46.8 16.5 93 239-332 179-286 (348)
145 PF06722 DUF1205: Protein of u 96.3 0.0011 2.3E-08 49.1 0.0 66 228-293 26-97 (97)
146 PRK10422 lipopolysaccharide co 96.2 1.1 2.4E-05 42.3 20.8 92 240-332 183-287 (352)
147 PF13579 Glyco_trans_4_4: Glyc 96.1 0.0089 1.9E-07 48.8 4.8 96 10-123 4-103 (160)
148 PLN03063 alpha,alpha-trehalose 96.0 0.11 2.4E-06 54.4 13.3 101 296-406 362-476 (797)
149 KOG4626 O-linked N-acetylgluco 96.0 0.086 1.9E-06 51.4 11.3 146 240-390 758-920 (966)
150 TIGR02201 heptsyl_trn_III lipo 95.9 1.6 3.4E-05 41.1 20.5 92 240-332 181-285 (344)
151 COG4370 Uncharacterized protei 95.6 0.02 4.4E-07 50.7 4.8 105 294-403 299-409 (412)
152 COG3660 Predicted nucleoside-d 95.6 1.5 3.2E-05 38.5 15.9 36 297-332 235-271 (329)
153 PRK10017 colanic acid biosynth 95.5 1.2 2.6E-05 43.0 17.1 85 302-390 323-409 (426)
154 PRK14501 putative bifunctional 95.5 0.14 3E-06 53.5 11.3 106 292-408 344-463 (726)
155 PF08660 Alg14: Oligosaccharid 95.4 0.08 1.7E-06 43.9 7.6 109 2-124 3-129 (170)
156 KOG0853 Glycosyltransferase [C 95.2 0.023 5E-07 54.7 4.2 89 313-407 377-467 (495)
157 PF13439 Glyco_transf_4: Glyco 94.9 0.19 4.2E-06 41.5 8.7 30 5-34 10-39 (177)
158 PF04464 Glyphos_transf: CDP-G 94.8 0.18 4E-06 47.9 9.5 110 288-403 250-369 (369)
159 cd03793 GT1_Glycogen_synthase_ 94.2 0.25 5.4E-06 48.8 8.7 102 300-403 468-582 (590)
160 PRK10964 ADP-heptose:LPS hepto 93.8 0.4 8.6E-06 44.6 9.1 128 240-373 178-320 (322)
161 PF05159 Capsule_synth: Capsul 93.8 0.36 7.7E-06 43.6 8.5 46 289-335 182-227 (269)
162 PF12000 Glyco_trans_4_3: Gkyc 93.8 2 4.3E-05 35.6 11.9 96 22-125 1-97 (171)
163 TIGR02919 accessory Sec system 93.6 0.45 9.8E-06 46.1 9.1 126 256-391 291-428 (438)
164 TIGR02398 gluc_glyc_Psyn gluco 93.5 3.5 7.6E-05 40.5 15.2 91 292-392 364-468 (487)
165 PF01975 SurE: Survival protei 92.4 0.18 3.8E-06 42.9 4.0 24 12-35 15-38 (196)
166 COG0859 RfaF ADP-heptose:LPS h 91.4 13 0.00027 34.9 19.6 92 240-332 175-276 (334)
167 PF08323 Glyco_transf_5: Starc 91.2 2.6 5.6E-05 37.5 10.3 27 8-34 17-43 (245)
168 COG0297 GlgA Glycogen synthase 91.0 2.4 5.1E-05 41.6 10.5 157 241-407 294-477 (487)
169 PF07429 Glyco_transf_56: 4-al 89.4 0.75 1.6E-05 42.2 5.3 79 290-373 245-331 (360)
170 PF01075 Glyco_transf_9: Glyco 88.3 0.39 8.5E-06 42.7 2.9 93 239-332 104-208 (247)
171 PRK02797 4-alpha-L-fucosyltran 87.5 3.9 8.5E-05 37.1 8.5 78 290-372 206-291 (322)
172 COG0052 RpsB Ribosomal protein 86.1 6.7 0.00015 34.2 8.8 32 96-127 157-190 (252)
173 TIGR00087 surE 5'/3'-nucleotid 86.0 3.8 8.2E-05 36.2 7.6 24 11-35 14-37 (244)
174 COG1927 Mtd Coenzyme F420-depe 85.3 22 0.00047 30.1 12.6 99 242-376 32-131 (277)
175 PLN03064 alpha,alpha-trehalose 84.4 6.6 0.00014 41.9 9.6 101 296-405 446-559 (934)
176 COG0496 SurE Predicted acid ph 84.1 3.2 6.9E-05 36.5 6.1 26 9-35 12-37 (252)
177 PRK02155 ppnK NAD(+)/NADH kina 83.8 10 0.00022 34.6 9.6 99 255-377 19-121 (291)
178 PRK03372 ppnK inorganic polyph 83.4 8.8 0.00019 35.2 9.0 54 304-374 70-127 (306)
179 cd02067 B12-binding B12 bindin 80.9 14 0.00029 28.5 8.1 49 2-50 5-57 (119)
180 PRK13932 stationary phase surv 80.7 6.2 0.00013 35.1 6.7 23 11-34 19-41 (257)
181 cd01424 MGS_CPS_II Methylglyox 80.4 12 0.00027 28.3 7.6 83 9-121 11-100 (110)
182 smart00851 MGS MGS-like domain 80.2 8 0.00017 28.0 6.3 33 13-47 2-34 (90)
183 PRK13935 stationary phase surv 79.4 11 0.00023 33.6 7.7 24 11-35 14-37 (253)
184 PRK02649 ppnK inorganic polyph 79.4 17 0.00036 33.5 9.3 54 304-374 66-123 (305)
185 PRK01231 ppnK inorganic polyph 78.5 23 0.0005 32.4 9.9 96 255-374 18-117 (295)
186 TIGR00715 precor6x_red precorr 78.5 11 0.00024 33.6 7.7 82 13-124 12-100 (256)
187 PRK04539 ppnK inorganic polyph 77.8 19 0.00042 32.9 9.2 98 256-374 20-123 (296)
188 PRK13933 stationary phase surv 77.6 15 0.00033 32.6 8.2 22 13-35 16-37 (253)
189 PF05693 Glycogen_syn: Glycoge 77.4 4.8 0.0001 40.1 5.4 92 299-393 462-567 (633)
190 cd00532 MGS-like MGS-like doma 77.4 13 0.00029 28.3 6.9 38 11-50 12-49 (112)
191 PRK00346 surE 5'(3')-nucleotid 75.9 15 0.00032 32.6 7.7 24 11-35 14-37 (250)
192 PF06925 MGDG_synth: Monogalac 75.6 2.4 5.2E-05 35.2 2.6 39 87-125 81-125 (169)
193 KOG0780 Signal recognition par 75.5 14 0.00031 34.6 7.6 48 2-49 107-162 (483)
194 PF04413 Glycos_transf_N: 3-De 75.0 20 0.00042 30.3 8.0 89 6-124 30-126 (186)
195 COG4394 Uncharacterized protei 75.0 64 0.0014 29.1 13.5 103 289-404 237-368 (370)
196 PRK14077 pnk inorganic polypho 74.8 25 0.00055 32.0 9.1 92 255-373 23-118 (287)
197 KOG0832 Mitochondrial/chloropl 74.2 58 0.0013 28.2 10.7 108 7-126 91-206 (251)
198 TIGR00725 conserved hypothetic 74.1 47 0.001 27.2 10.6 97 231-335 22-124 (159)
199 TIGR03087 stp1 sugar transfera 73.8 3.2 6.9E-05 39.9 3.3 30 3-33 9-39 (397)
200 COG0552 FtsY Signal recognitio 72.8 25 0.00053 32.5 8.3 48 2-49 145-200 (340)
201 PF00448 SRP54: SRP54-type pro 71.6 22 0.00048 30.3 7.6 49 2-50 7-63 (196)
202 COG0541 Ffh Signal recognition 70.5 26 0.00055 33.6 8.1 47 4-50 108-162 (451)
203 PF05014 Nuc_deoxyrib_tr: Nucl 70.4 4.1 8.8E-05 31.1 2.6 91 243-338 1-101 (113)
204 PF07355 GRDB: Glycine/sarcosi 70.2 31 0.00067 32.0 8.4 40 304-351 266-306 (349)
205 PRK13934 stationary phase surv 69.6 35 0.00076 30.6 8.5 25 10-35 13-37 (266)
206 KOG1387 Glycosyltransferase [C 69.4 84 0.0018 29.3 10.8 97 288-390 335-445 (465)
207 PRK04885 ppnK inorganic polyph 69.3 9.8 0.00021 34.1 5.1 53 305-374 34-92 (265)
208 PRK12342 hypothetical protein; 69.2 27 0.00059 31.1 7.8 29 95-123 109-143 (254)
209 COG1703 ArgK Putative periplas 69.1 48 0.0011 30.2 9.2 28 4-31 59-86 (323)
210 TIGR01285 nifN nitrogenase mol 68.8 33 0.00071 33.4 9.0 27 93-122 371-397 (432)
211 PLN02929 NADH kinase 68.8 8.7 0.00019 35.0 4.7 95 256-374 33-136 (301)
212 PRK01911 ppnK inorganic polyph 68.7 11 0.00023 34.5 5.3 101 256-377 15-122 (292)
213 TIGR00708 cobA cob(I)alamin ad 68.4 61 0.0013 26.9 9.2 49 2-50 11-65 (173)
214 PRK05579 bifunctional phosphop 68.4 1.2E+02 0.0025 29.3 18.9 36 6-41 15-50 (399)
215 COG1066 Sms Predicted ATP-depe 68.1 43 0.00094 32.0 9.0 34 5-39 102-135 (456)
216 PF09314 DUF1972: Domain of un 68.0 65 0.0014 27.1 9.4 39 12-50 22-62 (185)
217 PF10093 DUF2331: Uncharacteri 67.5 15 0.00034 34.5 6.1 40 290-330 244-286 (374)
218 PRK10867 signal recognition pa 66.9 32 0.0007 33.4 8.3 49 2-50 106-163 (433)
219 TIGR02370 pyl_corrinoid methyl 66.9 44 0.00096 28.5 8.4 49 2-50 90-142 (197)
220 TIGR01425 SRP54_euk signal rec 66.5 30 0.00065 33.5 8.0 35 2-36 106-140 (429)
221 PRK02645 ppnK inorganic polyph 65.4 31 0.00066 31.8 7.6 68 256-334 18-89 (305)
222 cd02070 corrinoid_protein_B12- 64.5 45 0.00098 28.5 8.1 49 2-50 88-140 (201)
223 PRK03378 ppnK inorganic polyph 64.4 17 0.00037 33.2 5.7 59 302-377 59-121 (292)
224 cd01423 MGS_CPS_I_III Methylgl 63.8 44 0.00096 25.5 7.2 85 11-121 13-106 (116)
225 PRK10416 signal recognition pa 63.0 51 0.0011 30.6 8.7 49 2-50 120-176 (318)
226 PRK03708 ppnK inorganic polyph 62.9 12 0.00026 33.9 4.4 94 255-374 14-111 (277)
227 PF02951 GSH-S_N: Prokaryotic 62.5 8.7 0.00019 29.7 3.0 25 11-35 18-42 (119)
228 PF00731 AIRC: AIR carboxylase 62.3 60 0.0013 26.3 7.8 136 242-389 2-147 (150)
229 PRK10916 ADP-heptose:LPS hepto 61.9 90 0.002 29.2 10.4 28 95-124 261-288 (348)
230 TIGR00064 ftsY signal recognit 61.7 60 0.0013 29.3 8.7 49 2-50 78-134 (272)
231 PRK00994 F420-dependent methyl 61.7 1.1E+02 0.0024 26.7 12.8 98 242-375 32-130 (277)
232 TIGR01082 murC UDP-N-acetylmur 61.3 33 0.00071 33.6 7.5 28 95-122 58-88 (448)
233 cd01965 Nitrogenase_MoFe_beta_ 60.6 41 0.0009 32.7 8.0 31 90-123 366-396 (428)
234 PF01075 Glyco_transf_9: Glyco 59.7 52 0.0011 28.9 8.0 79 13-124 126-210 (247)
235 PF12797 Fer4_2: 4Fe-4S bindin 59.4 4.1 8.8E-05 20.8 0.4 11 425-435 4-14 (22)
236 PRK14075 pnk inorganic polypho 59.2 32 0.0007 30.7 6.5 53 305-374 40-93 (256)
237 PRK01185 ppnK inorganic polyph 58.6 35 0.00075 30.8 6.6 52 306-374 52-104 (271)
238 COG1618 Predicted nucleotide k 58.3 9.5 0.00021 31.1 2.6 48 4-51 13-60 (179)
239 TIGR02990 ectoine_eutA ectoine 57.5 99 0.0022 27.3 9.1 42 9-50 104-152 (239)
240 PRK10422 lipopolysaccharide co 57.5 81 0.0017 29.7 9.3 28 95-124 262-289 (352)
241 cd03466 Nitrogenase_NifN_2 Nit 57.3 87 0.0019 30.5 9.6 30 91-123 368-397 (429)
242 cd00550 ArsA_ATPase Oxyanion-t 57.2 14 0.00031 32.9 3.9 32 3-34 7-38 (254)
243 PRK02231 ppnK inorganic polyph 57.2 42 0.00092 30.3 6.9 61 300-377 36-101 (272)
244 PRK12311 rpsB 30S ribosomal pr 57.1 1.7E+02 0.0036 27.3 15.3 32 95-126 152-185 (326)
245 TIGR02195 heptsyl_trn_II lipop 57.1 1E+02 0.0022 28.6 9.9 28 95-124 251-278 (334)
246 PF00862 Sucrose_synth: Sucros 57.0 9.2 0.0002 37.2 2.7 113 5-123 294-431 (550)
247 cd01974 Nitrogenase_MoFe_beta 56.9 1E+02 0.0022 30.1 10.0 30 91-123 373-402 (435)
248 PLN02935 Bifunctional NADH kin 56.9 23 0.00049 34.8 5.3 54 304-374 260-317 (508)
249 PRK05986 cob(I)alamin adenolsy 56.7 1.2E+02 0.0027 25.6 9.3 49 2-50 28-83 (191)
250 PF10933 DUF2827: Protein of u 56.5 55 0.0012 30.6 7.4 87 291-391 254-351 (364)
251 PRK03359 putative electron tra 56.4 54 0.0012 29.3 7.3 30 95-124 112-147 (256)
252 PRK03501 ppnK inorganic polyph 56.1 35 0.00075 30.7 6.1 54 305-374 38-96 (264)
253 TIGR00959 ffh signal recogniti 55.9 61 0.0013 31.5 8.1 48 2-49 105-161 (428)
254 PRK10017 colanic acid biosynth 55.1 98 0.0021 30.1 9.4 33 303-335 114-157 (426)
255 PRK05973 replicative DNA helic 55.0 67 0.0014 28.3 7.6 34 3-36 71-104 (237)
256 TIGR02015 BchY chlorophyllide 55.0 76 0.0016 30.8 8.7 29 92-123 352-380 (422)
257 PF02441 Flavoprotein: Flavopr 54.8 10 0.00022 29.8 2.2 39 5-43 8-46 (129)
258 PF02558 ApbA: Ketopantoate re 54.2 18 0.00038 29.1 3.7 37 14-50 11-47 (151)
259 COG2327 WcaK Polysaccharide py 54.2 1.2E+02 0.0025 28.9 9.4 86 290-380 266-357 (385)
260 PF11071 DUF2872: Protein of u 54.0 20 0.00044 27.8 3.6 31 303-333 69-107 (141)
261 cd01980 Chlide_reductase_Y Chl 53.9 83 0.0018 30.5 8.8 28 93-123 348-375 (416)
262 TIGR01081 mpl UDP-N-acetylmura 53.8 58 0.0013 31.9 7.9 72 13-121 12-89 (448)
263 PRK12446 undecaprenyldiphospho 53.7 72 0.0016 30.1 8.2 29 305-333 90-121 (352)
264 PRK02261 methylaspartate mutas 53.6 17 0.00038 28.8 3.4 49 2-50 9-61 (137)
265 PF04127 DFP: DNA / pantothena 53.6 15 0.00031 31.0 3.1 44 3-50 24-67 (185)
266 TIGR01662 HAD-SF-IIIA HAD-supe 53.6 1E+02 0.0022 23.9 8.0 22 13-34 30-51 (132)
267 PF13460 NAD_binding_10: NADH( 53.4 22 0.00047 29.5 4.3 46 2-50 2-47 (183)
268 PRK02910 light-independent pro 51.6 1.3E+02 0.0028 30.2 10.0 31 90-123 357-387 (519)
269 PRK14106 murD UDP-N-acetylmura 51.5 1.1E+02 0.0023 29.9 9.4 20 14-33 18-37 (450)
270 KOG4180 Predicted kinase [Gene 51.1 12 0.00025 34.0 2.2 30 304-333 103-136 (395)
271 PRK05579 bifunctional phosphop 50.9 1.2E+02 0.0026 29.2 9.2 68 304-373 80-181 (399)
272 PRK11889 flhF flagellar biosyn 50.6 90 0.0019 30.0 8.0 34 2-35 247-280 (436)
273 PF10649 DUF2478: Protein of u 50.5 1.4E+02 0.003 24.5 8.6 110 5-123 7-130 (159)
274 TIGR01261 hisB_Nterm histidino 50.5 1.1E+02 0.0025 24.9 7.9 21 13-33 34-54 (161)
275 PRK11199 tyrA bifunctional cho 49.7 1.2E+02 0.0027 28.8 9.1 37 14-50 112-151 (374)
276 TIGR00745 apbA_panE 2-dehydrop 49.7 20 0.00043 32.6 3.7 35 15-49 5-39 (293)
277 PRK05282 (alpha)-aspartyl dipe 49.5 1.6E+02 0.0034 25.9 9.0 83 232-333 24-120 (233)
278 PF02056 Glyco_hydro_4: Family 49.4 36 0.00077 28.6 4.8 108 10-125 41-169 (183)
279 PF01012 ETF: Electron transfe 49.2 1.4E+02 0.0031 24.2 9.3 90 13-123 20-121 (164)
280 TIGR01283 nifE nitrogenase mol 49.2 1.2E+02 0.0026 29.9 9.2 30 91-123 391-420 (456)
281 TIGR02201 heptsyl_trn_III lipo 48.6 1.1E+02 0.0024 28.6 8.6 28 95-124 260-287 (344)
282 PF12146 Hydrolase_4: Putative 48.4 21 0.00045 25.2 2.8 27 4-30 23-49 (79)
283 PRK14076 pnk inorganic polypho 48.3 36 0.00078 34.5 5.5 55 305-376 347-405 (569)
284 PF13419 HAD_2: Haloacid dehal 48.3 1.4E+02 0.0031 23.9 8.8 33 13-45 82-117 (176)
285 PRK04761 ppnK inorganic polyph 47.7 25 0.00055 31.1 3.8 53 305-373 24-80 (246)
286 COG0569 TrkA K+ transport syst 47.7 66 0.0014 28.1 6.4 21 14-34 13-33 (225)
287 PRK06769 hypothetical protein; 47.2 1.4E+02 0.0031 24.6 8.2 22 13-34 33-54 (173)
288 COG2086 FixA Electron transfer 46.6 1.3E+02 0.0028 26.9 8.1 31 93-123 109-145 (260)
289 PF08433 KTI12: Chromatin asso 46.3 1.4E+02 0.003 27.0 8.4 92 2-123 7-104 (270)
290 cd03115 SRP The signal recogni 46.2 1E+02 0.0023 25.2 7.3 33 3-35 7-39 (173)
291 TIGR01990 bPGM beta-phosphoglu 46.0 99 0.0022 25.5 7.2 32 13-44 92-124 (185)
292 KOG3339 Predicted glycosyltran 45.9 54 0.0012 27.4 5.1 23 2-24 43-65 (211)
293 PRK08305 spoVFB dipicolinate s 45.9 23 0.00049 30.1 3.1 35 4-38 12-47 (196)
294 PRK04020 rps2P 30S ribosomal p 45.7 1.2E+02 0.0026 26.0 7.4 33 95-127 114-148 (204)
295 PTZ00254 40S ribosomal protein 45.6 1.2E+02 0.0025 26.9 7.5 32 95-126 118-151 (249)
296 COG2109 BtuR ATP:corrinoid ade 45.6 1.9E+02 0.0041 24.5 9.3 48 3-50 35-90 (198)
297 TIGR00730 conserved hypothetic 45.5 1.7E+02 0.0036 24.5 8.2 96 232-333 24-133 (178)
298 PRK08057 cobalt-precorrin-6x r 45.4 1.4E+02 0.0031 26.5 8.2 81 13-124 14-100 (248)
299 PF01008 IF-2B: Initiation fac 45.2 62 0.0013 29.3 6.2 17 108-124 202-218 (282)
300 TIGR02009 PGMB-YQAB-SF beta-ph 45.2 79 0.0017 26.1 6.5 36 9-44 88-125 (185)
301 PRK07313 phosphopantothenoylcy 45.1 1.9E+02 0.004 24.3 9.9 29 323-351 108-145 (182)
302 PF04244 DPRP: Deoxyribodipyri 45.1 32 0.00068 30.0 4.0 25 9-33 47-71 (224)
303 cd03789 GT1_LPS_heptosyltransf 45.0 1.3E+02 0.0029 27.0 8.3 24 12-35 141-164 (279)
304 PRK00421 murC UDP-N-acetylmura 44.5 98 0.0021 30.4 7.9 28 95-122 66-96 (461)
305 TIGR01012 Sa_S2_E_A ribosomal 44.5 1.2E+02 0.0027 25.8 7.2 33 95-127 108-142 (196)
306 PRK00771 signal recognition pa 43.8 1.1E+02 0.0024 29.8 7.8 34 2-35 101-134 (437)
307 TIGR01656 Histidinol-ppas hist 43.8 1.7E+02 0.0036 23.4 8.2 22 13-34 32-53 (147)
308 cd08171 GlyDH-like2 Glycerol d 42.9 2.5E+02 0.0055 26.3 10.0 91 13-126 11-112 (345)
309 PF09001 DUF1890: Domain of un 42.8 23 0.0005 27.8 2.4 33 11-43 14-46 (139)
310 PF01993 MTD: methylene-5,6,7, 42.5 1E+02 0.0022 27.0 6.4 95 246-376 35-130 (276)
311 TIGR02193 heptsyl_trn_I lipopo 42.0 1.3E+02 0.0029 27.6 8.0 28 95-124 254-281 (319)
312 COG1797 CobB Cobyrinic acid a, 42.0 62 0.0013 31.1 5.6 27 4-30 9-35 (451)
313 TIGR03609 S_layer_CsaB polysac 42.0 1.4E+02 0.0029 27.3 8.0 44 304-351 248-291 (298)
314 cd03146 GAT1_Peptidase_E Type 42.0 2.3E+02 0.0049 24.4 10.0 85 229-333 17-121 (212)
315 PRK14974 cell division protein 41.9 1.2E+02 0.0027 28.3 7.6 34 2-35 146-179 (336)
316 TIGR01428 HAD_type_II 2-haloal 41.9 1.3E+02 0.0028 25.3 7.4 32 13-44 97-131 (198)
317 KOG3062 RNA polymerase II elon 41.8 78 0.0017 27.6 5.6 32 2-33 7-39 (281)
318 PRK09423 gldA glycerol dehydro 41.7 2.8E+02 0.0061 26.3 10.2 90 13-126 18-118 (366)
319 PRK14476 nitrogenase molybdenu 41.5 1.6E+02 0.0035 28.9 8.7 25 95-122 371-395 (455)
320 COG2099 CobK Precorrin-6x redu 41.5 76 0.0016 28.1 5.6 30 304-333 194-229 (257)
321 PF13377 Peripla_BP_3: Peripla 41.0 62 0.0013 25.9 5.1 33 17-49 1-45 (160)
322 PF00532 Peripla_BP_1: Peripla 41.0 90 0.0019 28.2 6.5 90 9-121 102-211 (279)
323 COG0859 RfaF ADP-heptose:LPS h 40.4 1.5E+02 0.0032 27.7 8.1 81 12-124 196-278 (334)
324 PRK01710 murD UDP-N-acetylmura 40.0 1.6E+02 0.0034 28.9 8.5 27 95-121 77-106 (458)
325 cd00316 Oxidoreductase_nitroge 39.9 2E+02 0.0043 27.5 9.1 29 92-123 345-373 (399)
326 PRK14573 bifunctional D-alanyl 39.4 1.3E+02 0.0029 32.0 8.4 18 13-30 17-34 (809)
327 cd00561 CobA_CobO_BtuR ATP:cor 39.3 2.1E+02 0.0046 23.4 9.7 48 3-50 9-63 (159)
328 PF06032 DUF917: Protein of un 39.1 21 0.00045 33.6 2.1 101 2-121 16-121 (353)
329 cd01977 Nitrogenase_VFe_alpha 39.0 1.4E+02 0.003 28.9 7.8 27 93-122 356-382 (415)
330 PRK05920 aromatic acid decarbo 38.9 35 0.00075 29.3 3.2 36 5-40 11-46 (204)
331 PLN02770 haloacid dehalogenase 38.8 1.5E+02 0.0032 26.2 7.5 32 13-44 113-147 (248)
332 TIGR03646 YtoQ_fam YtoQ family 38.7 38 0.00081 26.4 3.0 31 303-333 72-110 (144)
333 PRK14477 bifunctional nitrogen 38.7 2.1E+02 0.0046 31.1 9.7 30 91-123 385-414 (917)
334 TIGR01449 PGP_bact 2-phosphogl 38.6 1.7E+02 0.0036 24.9 7.7 32 13-44 90-124 (213)
335 PF02310 B12-binding: B12 bind 38.5 38 0.00082 25.9 3.2 48 3-50 7-58 (121)
336 PF02702 KdpD: Osmosensitive K 38.4 63 0.0014 27.6 4.5 48 3-50 12-62 (211)
337 PRK11914 diacylglycerol kinase 38.3 80 0.0017 29.0 5.9 82 242-335 12-97 (306)
338 PRK06849 hypothetical protein; 38.2 1.8E+02 0.0038 27.8 8.4 24 11-34 15-38 (389)
339 COG2159 Predicted metal-depend 38.1 2.3E+02 0.005 25.9 8.6 71 258-332 145-222 (293)
340 PRK05234 mgsA methylglyoxal sy 38.1 2.1E+02 0.0045 22.9 7.8 37 11-49 17-56 (142)
341 cd01981 Pchlide_reductase_B Pc 38.0 2.6E+02 0.0057 27.2 9.6 30 91-123 366-395 (430)
342 TIGR02655 circ_KaiC circadian 38.0 3.6E+02 0.0078 26.8 10.7 34 4-37 271-304 (484)
343 PLN02727 NAD kinase 38.0 98 0.0021 33.0 6.7 59 302-377 739-801 (986)
344 PRK10117 trehalose-6-phosphate 37.9 1.9E+02 0.0041 28.5 8.4 88 296-392 338-439 (474)
345 cd01141 TroA_d Periplasmic bin 37.5 38 0.00081 28.3 3.3 33 91-123 65-99 (186)
346 PF06506 PrpR_N: Propionate ca 37.4 87 0.0019 26.0 5.4 43 8-50 17-60 (176)
347 PF01380 SIS: SIS domain SIS d 37.4 69 0.0015 24.6 4.6 46 3-48 59-104 (131)
348 PRK08335 translation initiatio 37.0 1.8E+02 0.0038 26.4 7.5 45 6-50 115-167 (275)
349 COG2910 Putative NADH-flavin r 37.0 34 0.00074 28.7 2.7 29 4-34 6-34 (211)
350 TIGR02113 coaC_strep phosphopa 36.9 28 0.0006 29.1 2.3 36 5-40 8-43 (177)
351 KOG1344 Predicted histone deac 36.8 21 0.00046 30.7 1.6 46 81-126 234-301 (324)
352 PRK08535 translation initiatio 36.6 1.5E+02 0.0032 27.4 7.2 44 7-50 127-178 (310)
353 PRK10490 sensor protein KdpD; 36.5 39 0.00085 36.5 3.9 47 3-49 31-80 (895)
354 PRK12726 flagellar biosynthesi 36.4 1.4E+02 0.0031 28.5 7.0 32 4-35 214-245 (407)
355 COG2185 Sbm Methylmalonyl-CoA 36.1 42 0.00091 26.8 3.0 49 2-50 18-70 (143)
356 PF07991 IlvN: Acetohydroxy ac 36.0 40 0.00087 27.6 2.9 44 2-50 10-55 (165)
357 TIGR03590 PseG pseudaminic aci 36.0 2.6E+02 0.0056 25.2 8.7 28 95-124 241-268 (279)
358 COG2085 Predicted dinucleotide 35.9 2.2E+02 0.0048 24.5 7.5 22 13-34 13-34 (211)
359 PRK09620 hypothetical protein; 35.9 43 0.00094 29.3 3.5 36 241-276 145-180 (229)
360 cd00672 CysRS_core catalytic c 35.5 1.7E+02 0.0037 25.3 7.0 27 6-32 35-64 (213)
361 PF07905 PucR: Purine cataboli 35.5 2.1E+02 0.0045 22.1 7.4 74 231-335 35-108 (123)
362 TIGR01664 DNA-3'-Pase DNA 3'-p 35.5 2.5E+02 0.0054 23.0 8.1 22 13-34 47-68 (166)
363 cd07039 TPP_PYR_POX Pyrimidine 35.4 1.1E+02 0.0024 25.0 5.7 31 305-335 62-98 (164)
364 cd01968 Nitrogenase_NifE_I Nit 35.3 3.2E+02 0.007 26.3 9.7 30 90-122 351-380 (410)
365 PF00070 Pyr_redox: Pyridine n 35.2 58 0.0013 22.7 3.5 22 12-33 10-31 (80)
366 PF00289 CPSase_L_chain: Carba 35.2 16 0.00035 27.7 0.6 65 259-323 14-89 (110)
367 PF06506 PrpR_N: Propionate ca 35.1 17 0.00037 30.3 0.8 30 305-335 33-62 (176)
368 PF13450 NAD_binding_8: NAD(P) 35.0 50 0.0011 22.4 3.0 18 14-31 9-26 (68)
369 PRK04148 hypothetical protein; 34.7 61 0.0013 25.6 3.8 28 95-122 77-108 (134)
370 PF09334 tRNA-synt_1g: tRNA sy 34.7 42 0.00092 32.2 3.5 26 7-32 16-44 (391)
371 TIGR01286 nifK nitrogenase mol 34.7 3.2E+02 0.0069 27.4 9.6 30 91-123 433-462 (515)
372 TIGR01918 various_sel_PB selen 34.6 17 0.00037 34.6 0.8 22 312-333 350-371 (431)
373 PRK05703 flhF flagellar biosyn 34.6 1.6E+02 0.0035 28.6 7.4 34 2-35 227-262 (424)
374 COG0003 ArsA Predicted ATPase 34.4 1.9E+02 0.004 27.0 7.4 35 318-352 268-302 (322)
375 COG1484 DnaC DNA replication p 34.4 42 0.00092 29.9 3.2 35 5-39 114-148 (254)
376 TIGR03837 efp_adjacent_2 conse 34.2 2.1E+02 0.0045 27.1 7.6 39 291-330 243-284 (371)
377 TIGR01917 gly_red_sel_B glycin 34.1 18 0.00038 34.5 0.7 22 312-333 350-371 (431)
378 PRK14478 nitrogenase molybdenu 34.0 2.6E+02 0.0057 27.6 8.9 29 91-122 389-417 (475)
379 TIGR00147 lipid kinase, YegS/R 34.0 97 0.0021 28.2 5.6 69 256-335 18-92 (293)
380 COG4007 Predicted dehydrogenas 33.8 53 0.0011 29.1 3.5 37 14-50 34-76 (340)
381 PLN03243 haloacid dehalogenase 33.7 2.3E+02 0.0049 25.4 7.8 32 13-44 114-148 (260)
382 cd02071 MM_CoA_mut_B12_BD meth 33.7 2.2E+02 0.0048 21.9 9.4 49 2-50 5-57 (122)
383 COG1663 LpxK Tetraacyldisaccha 33.4 55 0.0012 30.3 3.8 34 2-35 55-88 (336)
384 PHA02754 hypothetical protein; 33.4 71 0.0015 20.7 3.1 24 369-392 7-31 (67)
385 PRK06067 flagellar accessory p 33.3 78 0.0017 27.7 4.8 33 3-35 32-64 (234)
386 cd05017 SIS_PGI_PMI_1 The memb 33.2 1.1E+02 0.0023 23.4 5.0 47 4-50 50-97 (119)
387 PRK02006 murD UDP-N-acetylmura 33.1 1.9E+02 0.004 28.9 7.9 16 15-30 21-36 (498)
388 TIGR01278 DPOR_BchB light-inde 33.0 2.1E+02 0.0046 28.6 8.2 31 90-123 359-389 (511)
389 TIGR00524 eIF-2B_rel eIF-2B al 32.9 1.2E+02 0.0026 27.9 5.9 16 109-124 224-239 (303)
390 cd01425 RPS2 Ribosomal protein 32.8 3.1E+02 0.0066 23.2 11.9 33 94-126 126-160 (193)
391 TIGR02700 flavo_MJ0208 archaeo 32.7 47 0.001 29.2 3.2 39 5-43 7-48 (234)
392 PF02606 LpxK: Tetraacyldisacc 32.7 57 0.0012 30.4 3.9 34 2-35 43-76 (326)
393 COG3433 Aryl carrier domain [S 32.7 20 0.00044 24.5 0.7 23 9-31 30-52 (74)
394 PRK06731 flhF flagellar biosyn 32.6 2.7E+02 0.0058 25.2 8.0 31 5-35 84-114 (270)
395 PRK11519 tyrosine kinase; Prov 32.5 4E+02 0.0086 28.1 10.4 29 3-31 534-562 (719)
396 cd03114 ArgK-like The function 32.4 2.6E+02 0.0057 22.4 8.3 31 3-33 6-36 (148)
397 PRK13288 pyrophosphatase PpaX; 32.2 2.9E+02 0.0064 23.5 8.2 33 13-45 87-122 (214)
398 CHL00067 rps2 ribosomal protei 32.2 3.5E+02 0.0076 23.7 10.7 33 95-127 161-195 (230)
399 COG0287 TyrA Prephenate dehydr 32.0 2.3E+02 0.0051 25.7 7.6 23 15-37 17-39 (279)
400 COG1184 GCD2 Translation initi 31.9 3E+02 0.0066 25.2 8.1 45 6-50 125-177 (301)
401 COG2874 FlaH Predicted ATPases 31.8 1.1E+02 0.0025 26.4 5.1 33 7-39 39-72 (235)
402 PF00282 Pyridoxal_deC: Pyrido 31.5 57 0.0012 31.0 3.8 67 306-373 103-189 (373)
403 TIGR02852 spore_dpaB dipicolin 31.5 55 0.0012 27.6 3.2 32 6-37 10-41 (187)
404 cd08187 BDH Butanol dehydrogen 31.4 87 0.0019 29.9 5.0 88 239-335 28-137 (382)
405 PF14626 RNase_Zc3h12a_2: Zc3h 31.4 39 0.00084 25.8 2.0 31 11-41 10-40 (122)
406 TIGR02329 propionate_PrpR prop 31.3 55 0.0012 32.8 3.7 31 91-124 141-171 (526)
407 PRK06732 phosphopantothenate-- 31.2 50 0.0011 29.0 3.1 36 241-276 151-186 (229)
408 COG1938 Archaeal enzymes of AT 31.1 3.8E+02 0.0081 23.8 12.8 37 310-346 153-194 (244)
409 COG1433 Uncharacterized conser 31.0 99 0.0021 24.0 4.2 37 14-50 55-93 (121)
410 PRK06372 translation initiatio 30.8 2.4E+02 0.0051 25.2 7.2 16 109-124 178-193 (253)
411 COG3613 Nucleoside 2-deoxyribo 30.8 1.5E+02 0.0032 24.6 5.4 92 240-335 4-107 (172)
412 PF03720 UDPG_MGDP_dh_C: UDP-g 30.7 63 0.0014 24.2 3.2 22 11-32 17-38 (106)
413 CHL00076 chlB photochlorophyll 30.6 4E+02 0.0087 26.7 9.6 30 91-123 370-399 (513)
414 cd01966 Nitrogenase_NifN_1 Nit 30.6 3.3E+02 0.0071 26.4 8.8 25 95-122 360-384 (417)
415 PRK06371 translation initiatio 30.4 1.9E+02 0.0042 26.9 6.8 38 13-50 157-203 (329)
416 PRK05720 mtnA methylthioribose 30.3 1.7E+02 0.0037 27.5 6.5 38 13-50 167-213 (344)
417 cd01121 Sms Sms (bacterial rad 30.2 4.9E+02 0.011 24.8 9.7 34 4-37 90-123 (372)
418 PRK01906 tetraacyldisaccharide 30.2 70 0.0015 29.9 4.0 35 2-36 64-98 (338)
419 PF06345 Drf_DAD: DRF Autoregu 30.0 39 0.00084 15.0 1.1 12 316-327 3-14 (15)
420 TIGR01689 EcbF-BcbF capsule bi 30.0 99 0.0021 24.2 4.2 40 12-51 28-85 (126)
421 TIGR00421 ubiX_pad polyprenyl 29.7 85 0.0019 26.3 4.1 30 11-40 13-42 (181)
422 PRK03094 hypothetical protein; 29.6 52 0.0011 23.3 2.3 20 13-32 10-29 (80)
423 PRK10586 putative oxidoreducta 29.4 1.6E+02 0.0035 27.9 6.3 90 231-335 24-119 (362)
424 COG1887 TagB Putative glycosyl 29.1 4.1E+02 0.009 25.5 9.1 105 293-403 273-386 (388)
425 TIGR03609 S_layer_CsaB polysac 28.8 2.7E+02 0.0059 25.3 7.7 76 256-335 15-108 (298)
426 cd02069 methionine_synthase_B1 28.7 1.4E+02 0.0031 25.7 5.5 49 2-50 94-146 (213)
427 COG1611 Predicted Rossmann fol 28.6 1.9E+02 0.0042 24.8 6.1 81 241-327 47-135 (205)
428 TIGR01501 MthylAspMutase methy 28.4 75 0.0016 25.2 3.3 48 3-50 8-59 (134)
429 cd08181 PPD-like 1,3-propanedi 28.4 1.4E+02 0.0031 28.1 5.9 88 239-335 25-133 (357)
430 TIGR00750 lao LAO/AO transport 28.1 2.8E+02 0.006 25.4 7.6 31 3-33 41-71 (300)
431 PRK00652 lpxK tetraacyldisacch 28.0 78 0.0017 29.5 3.9 34 2-35 57-90 (325)
432 PRK06249 2-dehydropantoate 2-r 27.8 85 0.0018 29.0 4.2 33 15-48 19-51 (313)
433 PF03698 UPF0180: Uncharacteri 27.7 56 0.0012 23.1 2.2 21 13-33 10-30 (80)
434 smart00046 DAGKc Diacylglycero 27.6 76 0.0017 24.6 3.3 31 306-336 49-88 (124)
435 PF00982 Glyco_transf_20: Glyc 27.6 3.2E+02 0.007 27.0 8.2 91 293-392 356-460 (474)
436 TIGR03878 thermo_KaiC_2 KaiC d 27.3 4.5E+02 0.0097 23.4 10.2 32 3-34 43-74 (259)
437 cd01422 MGS Methylglyoxal synt 27.3 2.8E+02 0.0061 21.1 8.3 37 11-49 12-51 (115)
438 TIGR00682 lpxK tetraacyldisacc 27.3 86 0.0019 29.0 4.0 35 2-36 36-70 (311)
439 PRK13982 bifunctional SbtC-lik 27.2 59 0.0013 32.0 3.1 35 14-50 286-320 (475)
440 KOG3125 Thymidine kinase [Nucl 27.1 4E+02 0.0086 22.8 8.1 90 239-350 25-132 (234)
441 PRK07313 phosphopantothenoylcy 27.1 54 0.0012 27.5 2.5 32 9-40 13-44 (182)
442 cd01743 GATase1_Anthranilate_S 27.1 1.4E+02 0.003 25.0 5.0 24 318-342 63-86 (184)
443 PRK08334 translation initiatio 27.0 5.4E+02 0.012 24.3 9.4 16 109-124 265-280 (356)
444 PF10087 DUF2325: Uncharacteri 27.0 63 0.0014 23.7 2.6 29 95-123 48-82 (97)
445 PRK10964 ADP-heptose:LPS hepto 27.0 2.8E+02 0.006 25.6 7.5 41 2-42 6-48 (322)
446 PRK00561 ppnK inorganic polyph 27.0 90 0.0019 27.9 3.9 30 305-334 32-65 (259)
447 PF04127 DFP: DNA / pantothena 27.0 3E+02 0.0065 23.2 6.9 65 240-313 18-89 (185)
448 COG0773 MurC UDP-N-acetylmuram 26.9 2.3E+02 0.005 27.7 6.8 71 13-121 20-95 (459)
449 PF00148 Oxidored_nitro: Nitro 26.8 4.8E+02 0.01 24.9 9.4 27 94-123 340-366 (398)
450 PRK00141 murD UDP-N-acetylmura 26.8 2.7E+02 0.0058 27.5 7.7 28 95-122 74-104 (473)
451 PF13561 adh_short_C2: Enoyl-( 26.8 1.7E+02 0.0038 25.4 5.9 37 14-50 10-52 (241)
452 PF10237 N6-adenineMlase: Prob 26.7 1.5E+02 0.0033 24.3 4.9 38 13-50 12-55 (162)
453 PRK12921 2-dehydropantoate 2-r 26.6 95 0.0021 28.3 4.3 35 14-48 13-47 (305)
454 COG3265 GntK Gluconate kinase 26.5 89 0.0019 25.3 3.4 55 311-372 3-63 (161)
455 COG0143 MetG Methionyl-tRNA sy 26.5 66 0.0014 32.4 3.3 40 7-46 22-69 (558)
456 PF06745 KaiC: KaiC; InterPro 26.3 4E+02 0.0086 23.0 8.0 32 4-35 27-59 (226)
457 TIGR00512 salvage_mtnA S-methy 26.1 2.2E+02 0.0048 26.6 6.4 16 109-124 252-267 (331)
458 PF01370 Epimerase: NAD depend 26.1 3E+02 0.0066 23.5 7.3 46 3-50 3-50 (236)
459 PRK10586 putative oxidoreducta 26.1 3.7E+02 0.0079 25.5 8.1 89 12-127 21-121 (362)
460 PRK13931 stationary phase surv 26.1 98 0.0021 27.8 4.0 30 95-124 87-129 (261)
461 PF13528 Glyco_trans_1_3: Glyc 25.9 3.3E+02 0.0071 24.8 7.8 28 95-123 250-277 (318)
462 PF01210 NAD_Gly3P_dh_N: NAD-d 25.8 61 0.0013 26.3 2.5 31 14-44 12-43 (157)
463 PRK10826 2-deoxyglucose-6-phos 25.7 3.4E+02 0.0074 23.2 7.5 22 13-34 97-118 (222)
464 PRK05772 translation initiatio 25.6 2.8E+02 0.006 26.3 7.0 39 12-50 187-234 (363)
465 TIGR02853 spore_dpaA dipicolin 25.5 2.6E+02 0.0057 25.5 6.8 23 11-33 11-33 (287)
466 PRK13057 putative lipid kinase 25.5 81 0.0018 28.7 3.5 66 258-335 14-83 (287)
467 TIGR01454 AHBA_synth_RP 3-amin 25.5 3.9E+02 0.0083 22.5 7.7 32 13-44 80-114 (205)
468 PRK01390 murD UDP-N-acetylmura 25.4 3.1E+02 0.0067 26.9 7.9 27 95-121 65-98 (460)
469 PF13433 Peripla_BP_5: Peripla 25.3 3.7E+02 0.0079 25.5 7.7 36 13-48 121-167 (363)
470 TIGR02638 lactal_redase lactal 25.3 1.2E+02 0.0025 29.0 4.7 19 258-276 45-63 (379)
471 PRK08155 acetolactate synthase 25.3 1.9E+02 0.004 29.4 6.4 29 305-333 75-109 (564)
472 PF02142 MGS: MGS-like domain 25.2 78 0.0017 23.1 2.8 36 13-50 2-37 (95)
473 PRK02705 murD UDP-N-acetylmura 24.9 5.1E+02 0.011 25.3 9.3 28 95-122 68-98 (459)
474 cd08170 GlyDH Glycerol dehydro 24.9 5.8E+02 0.013 23.9 10.3 33 94-126 76-111 (351)
475 cd03820 GT1_amsD_like This fam 24.8 5.1E+02 0.011 23.2 10.6 94 242-335 2-114 (348)
476 PLN02205 alpha,alpha-trehalose 24.8 2.1E+02 0.0046 30.7 6.8 90 294-392 420-537 (854)
477 TIGR01087 murD UDP-N-acetylmur 24.6 3.2E+02 0.0069 26.5 7.8 28 95-122 62-92 (433)
478 PRK00994 F420-dependent methyl 24.6 92 0.002 27.2 3.3 33 92-124 57-95 (277)
479 PRK13059 putative lipid kinase 24.5 81 0.0018 28.8 3.4 67 257-335 19-91 (295)
480 cd08191 HHD 6-hydroxyhexanoate 24.3 1.8E+02 0.0039 27.9 5.8 94 232-335 14-130 (386)
481 COG4088 Predicted nucleotide k 24.3 61 0.0013 27.9 2.2 32 3-34 8-39 (261)
482 PLN02470 acetolactate synthase 24.3 2.2E+02 0.0048 29.1 6.7 29 305-333 75-109 (585)
483 PRK03369 murD UDP-N-acetylmura 24.0 4E+02 0.0086 26.5 8.3 28 95-122 70-100 (488)
484 COG3947 Response regulator con 23.9 1E+02 0.0023 28.0 3.6 57 90-146 39-103 (361)
485 cd08172 GlyDH-like1 Glycerol d 23.8 5.5E+02 0.012 24.1 8.9 33 94-126 75-110 (347)
486 KOG0081 GTPase Rab27, small G 23.8 2.6E+02 0.0057 22.8 5.5 30 94-123 123-162 (219)
487 PF04558 tRNA_synt_1c_R1: Glut 23.8 1.1E+02 0.0023 25.3 3.5 30 338-373 101-130 (164)
488 TIGR03309 matur_yqeB selenium- 23.8 36 0.00077 30.2 0.8 19 13-31 10-28 (256)
489 TIGR03351 PhnX-like phosphonat 23.6 3.7E+02 0.0081 22.9 7.3 33 13-45 92-127 (220)
490 PRK04308 murD UDP-N-acetylmura 23.6 4.4E+02 0.0095 25.7 8.5 27 95-121 67-96 (445)
491 COG4229 Predicted enolase-phos 23.5 1.2E+02 0.0027 25.3 3.7 32 6-37 100-132 (229)
492 cd06533 Glyco_transf_WecG_TagA 23.5 3E+02 0.0066 22.7 6.3 45 230-280 89-134 (171)
493 cd05014 SIS_Kpsf KpsF-like pro 23.4 1.4E+02 0.0031 22.9 4.2 42 3-44 53-94 (128)
494 PRK03803 murD UDP-N-acetylmura 23.4 4.2E+02 0.0091 25.9 8.3 27 95-121 68-97 (448)
495 PF13344 Hydrolase_6: Haloacid 23.4 1.1E+02 0.0023 22.7 3.2 36 10-45 64-101 (101)
496 COG0162 TyrS Tyrosyl-tRNA synt 23.3 83 0.0018 30.2 3.2 26 7-33 48-73 (401)
497 cd01976 Nitrogenase_MoFe_alpha 23.3 46 0.00099 32.3 1.5 30 91-123 365-394 (421)
498 PF01513 NAD_kinase: ATP-NAD k 23.2 91 0.002 28.4 3.4 34 301-334 71-108 (285)
499 cd02032 Bchl_like This family 23.1 86 0.0019 28.0 3.2 27 5-31 9-35 (267)
500 PF03308 ArgK: ArgK protein; 23.1 2.1E+02 0.0045 25.7 5.3 28 4-31 37-64 (266)
No 1
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=3.6e-49 Score=379.62 Aligned_cols=390 Identities=39% Similarity=0.656 Sum_probs=287.2
Q ss_pred CcccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHhcCceeEEccccccCCCCC-CCC----CchhhHHHHHHHH
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLDMVKNKGFLP-SGP----SEIPVQRNQMKEI 75 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~-~~~----~~~~~~~~~~~~~ 75 (435)
|+++|+.||++|+++||++|++|||+|+|++++.+...++..|++|++++......... ... .............
T Consensus 5 ~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (401)
T cd03784 5 ITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAAGLEFVPVGGDPDELLASPERNAGLLLLGPGLLLGALRL 84 (401)
T ss_pred EEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHcCCceeeCCCCHHHHHhhhhhcccccccchHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999997321110000 000 0000001111111
Q ss_pred HHHHHhhccCCCccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCCCCCCCCcccCCCccchHHHHHHH-
Q 013835 76 IYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQIVD- 154 (435)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~- 154 (435)
+........+.+.+.+++++||+||+|...+++..+|+++|||++.+++.++......+++.. ..+...+....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 159 (401)
T cd03784 85 LRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPPPLG-----RANLRLYALLEA 159 (401)
T ss_pred HHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCCccc-----hHHHHHHHHHHH
Confidence 222222222333344556799999999988888999999999999998887766555554441 11111221111
Q ss_pred HHHHHHHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCCCCcCCCCCCCCCCeeeecccccCCCCCCCchHHHH
Q 013835 155 SLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLASNYEPPESLVK 234 (435)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~l~~ 234 (435)
...........+..++ .+++++..... ....+..+.+++.+.+...+++++..++|+.+.........+..++.
T Consensus 160 ~~~~~~~~~~~~~~~~-~~gl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 233 (401)
T cd03784 160 ELWQDLLGAWLRARRR-RLGLPPLSLLD-----GSDVPELYGFSPAVLPPPPDWPRFDLVTGYGFRDVPYNGPPPPELWL 233 (401)
T ss_pred HHHHHHHHHHHHHHHH-hcCCCCCcccc-----cCCCcEEEecCcccCCCCCCccccCcEeCCCCCCCCCCCCCCHHHHH
Confidence 1122334445555555 47776544311 11234555567666666667788888886443333333445677889
Q ss_pred HHHcCCCcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeC
Q 013835 235 WLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHG 314 (435)
Q Consensus 235 ~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~l~I~hg 314 (435)
|++.++++|||++||......+.+.+.++++++..+.++++.+|+..... ...++|+.+.+|+|+.+++++||+|||||
T Consensus 234 ~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~~-~~~~~~v~~~~~~p~~~ll~~~d~~I~hg 312 (401)
T cd03784 234 FLAAGRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLGA-EDLPDNVRVVDFVPHDWLLPRCAAVVHHG 312 (401)
T ss_pred HHhCCCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccccc-cCCCCceEEeCCCCHHHHhhhhheeeecC
Confidence 99887899999999997766778889999999988999999988765332 35689999999999999999999999999
Q ss_pred CchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHhhccCcH
Q 013835 315 GAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPKVKERAVELAEAMEKEDGV 394 (435)
Q Consensus 315 G~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~ 394 (435)
|+||++||+++|+|+|++|...||..||+++++.|+|+ .++..++++++|.++|++++++.+++++++.++++...+|.
T Consensus 313 G~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~-~l~~~~~~~~~l~~al~~~l~~~~~~~~~~~~~~~~~~~g~ 391 (401)
T cd03784 313 GAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGP-ALDPRELTAERLAAALRRLLDPPSRRRAAALLRRIREEDGV 391 (401)
T ss_pred CchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCC-CCCcccCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHhccCH
Confidence 99999999999999999999999999999999999997 88887789999999999999656778888888888888999
Q ss_pred HHHHHHHHH
Q 013835 395 TGAVKAFFK 403 (435)
Q Consensus 395 ~~~~~~i~~ 403 (435)
+++++.||+
T Consensus 392 ~~~~~~ie~ 400 (401)
T cd03784 392 PSAADVIER 400 (401)
T ss_pred HHHHHHHhh
Confidence 999999986
No 2
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=2.9e-49 Score=383.08 Aligned_cols=416 Identities=13% Similarity=0.109 Sum_probs=294.8
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCCCc--HHHHHhcCceeEEccccccC-C--CCCCCC----CchhhHHHHH
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF--KDFVLTAGLEFYPLDMVKNK-G--FLPSGP----SEIPVQRNQM 72 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~--~~~~~~~g~~~~~i~~~~~~-~--~~~~~~----~~~~~~~~~~ 72 (435)
+|.++.+|+.-+.+++++|++|||+||++++... .......+++.+.++...+. . ...... ..........
T Consensus 27 ~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (507)
T PHA03392 27 FPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLCGNITEIDASLSVEYFKKLVKSSAVFRKRGVVADSSTVT 106 (507)
T ss_pred cCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccCCCCCEEEEEcCCChHHHHHHHhhhhHHHhhhhhhhHHHHH
Confidence 3557999999999999999999999999987531 11113456666665421111 0 000000 0000000000
Q ss_pred HHHHHHHHhhc-----cCCCccCCc--ccCcCEEEeCCcchhHHHHHHHc-CCCEEEeeccCCCC----CCC-CCCCCcc
Q 013835 73 KEIIYSLLPAC-----RDPDLDSGI--AFKADAIIANPPAYGHVHVAEAL-KIPIHIFFTMPWTP----TSE-FPHPLSR 139 (435)
Q Consensus 73 ~~~~~~~~~~~-----~~~~~~~~~--~~~pDlVi~d~~~~~~~~~A~~~-~iP~v~~~~~~~~~----~~~-~p~~~~~ 139 (435)
..........| ...+++.++ +.++|+||+|++..+++.+|+++ ++|.|.+++..... ..+ .|.++++
T Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~~~~gg~p~~~sy 186 (507)
T PHA03392 107 ADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENFETMGAVSRHPVY 186 (507)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHHHhhccCCCCCee
Confidence 00111111111 122244555 67899999998888888899999 99998886643321 223 5666665
Q ss_pred cCCCcc---chHH-HHHHHHHH--------HHHHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCCCCcCCCCC
Q 013835 140 VKQPAG---YRLS-YQIVDSLI--------WLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKD 207 (435)
Q Consensus 140 ~~~~~~---~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (435)
++.... .++. +++..+++ +..+....+++.++.++.. ... ...........+.+++..++.+++
T Consensus 187 vP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~-~~~---~~~l~~~~~l~lvns~~~~d~~rp 262 (507)
T PHA03392 187 YPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPD-TPT---IRELRNRVQLLFVNVHPVFDNNRP 262 (507)
T ss_pred eCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCC-CCC---HHHHHhCCcEEEEecCccccCCCC
Confidence 443211 1111 12222221 1111234455555444421 111 112233556778889888899999
Q ss_pred CCCCCeeeecccccCCCCCCCchHHHHHHHcCC-CcEEEeeCCCCC--CChHHHHHHHHHHHHHhCCeEEEEcCCCCCCC
Q 013835 208 WGPKVDVVGFCFLDLASNYEPPESLVKWLEAGS-KPIYIGFGSLPV--QEPEKMTQIIVEAFEQTGQRGIINKGWGGLGN 284 (435)
Q Consensus 208 ~~~~~~~vG~~~~~~~~~~~~~~~l~~~~~~~~-~~v~v~~Gs~~~--~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~ 284 (435)
++++++++||+..+.....++|+++.+|++..+ ++|||++||... ..+.++++.+++++++.+.++||..++....
T Consensus 263 ~~p~v~~vGgi~~~~~~~~~l~~~l~~fl~~~~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~~- 341 (507)
T PHA03392 263 VPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNSTNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVEA- 341 (507)
T ss_pred CCCCeeeecccccCCCCCCCCCHHHHHHHhcCCCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcCc-
Confidence 999999999987643333467889999998765 599999999853 3456788999999999999999887643321
Q ss_pred CCCCCCceEEcCCCChhhhc--ccccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCH
Q 013835 285 LAEPKDSIYLLDNIPHDWLF--LQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSL 362 (435)
Q Consensus 285 ~~~~~~~v~~~~~~p~~~~l--~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~ 362 (435)
...|+||.+.+|+||.+++ +++++||||||+||+.||+++|||+|++|..+||..||++++++|+|+ .++..+++.
T Consensus 342 -~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~-~l~~~~~t~ 419 (507)
T PHA03392 342 -INLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGR-ALDTVTVSA 419 (507)
T ss_pred -ccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEE-EeccCCcCH
Confidence 2578999999999999995 789999999999999999999999999999999999999999999998 899889999
Q ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhhccC--cHHHHHHHHHHhcccc-CCCCCCCCCCCCCCCccee
Q 013835 363 PKLINAINFML-DPKVKERAVELAEAMEKED--GVTGAVKAFFKHYSRS-KTQPKPERETSPEPSRFFS 427 (435)
Q Consensus 363 ~~l~~~i~~ll-~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~~~~~~~ 427 (435)
++|.++|++++ |++|+++|+++++.++++. +.+++++++|.+++.. +. .++++...++.|||
T Consensus 420 ~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~p~~~~~~av~~iE~v~r~~~g~---~~lr~~~~~l~~~q 485 (507)
T PHA03392 420 AQLVLAIVDVIENPKYRKNLKELRHLIRHQPMTPLHKAIWYTEHVIRNKHGN---TSLKTKAANVSYSD 485 (507)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCCc---ccccccccCCCHHH
Confidence 99999999999 9999999999999999874 8899999999999887 54 48898889999987
No 3
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=2.7e-46 Score=357.89 Aligned_cols=381 Identities=21% Similarity=0.276 Sum_probs=272.0
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHhcCceeEEccccccCCCCCCCC--CchhhHHHHHHHHHHHH
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLDMVKNKGFLPSGP--SEIPVQRNQMKEIIYSL 79 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 79 (435)
+.+|+.||++|+++||++|+++||+|+|++++.+.+.+++.|++|++++............ .........+.......
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAAGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLDEAEDV 80 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHcCCEEEecCCcCccccccccccCcchHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999997322111000000 11111111111111112
Q ss_pred HhhccCCCccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCCCCCCCCcccCCCccchHHH--HHHHHHH
Q 013835 80 LPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSY--QIVDSLI 157 (435)
Q Consensus 80 ~~~~~~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~ 157 (435)
+ ..+...+++++||+||+|+.++++.++|+.+|||+|.+.+.+... ..+|.+.. +....... ....+ .
T Consensus 81 ~----~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~-~ 150 (392)
T TIGR01426 81 L----PQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN-EEFEEMVS----PAGEGSAEEGAIAER-G 150 (392)
T ss_pred H----HHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc-cccccccc----ccchhhhhhhccccc-h
Confidence 2 222344566799999999988888999999999999886543221 12222110 00000000 00000 1
Q ss_pred HHHHhHHHHHHHHhccCCCC--CCCCCCCCCCCCCCCeeEeeCCCCcCCCCCCCCCCeeeecccccCCCCCCCchHHHHH
Q 013835 158 WLGIRDMINDVRKKKLKLRP--VTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLASNYEPPESLVKW 235 (435)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~l~~~ 235 (435)
+..+...+++++++ +|++. ...+. ..... .....+++.+.+.+..++++++++||+...... ...|
T Consensus 151 ~~~~~~~~~~~r~~-~gl~~~~~~~~~---~~~~~-~~l~~~~~~l~~~~~~~~~~~~~~Gp~~~~~~~-------~~~~ 218 (392)
T TIGR01426 151 LAEYVARLSALLEE-HGITTPPVEFLA---APRRD-LNLVYTPKAFQPAGETFDDSFTFVGPCIGDRKE-------DGSW 218 (392)
T ss_pred hHHHHHHHHHHHHH-hCCCCCCHHHHh---cCCcC-cEEEeCChHhCCCccccCCCeEEECCCCCCccc-------cCCC
Confidence 22344567777764 77542 22211 11111 133445555556566788999999997643211 1123
Q ss_pred HH--cCCCcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCC-CCCCCCCCCceEEcCCCChhhhcccccEEEE
Q 013835 236 LE--AGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGG-LGNLAEPKDSIYLLDNIPHDWLFLQCKAVVH 312 (435)
Q Consensus 236 ~~--~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~-~~~~~~~~~~v~~~~~~p~~~~l~~~~l~I~ 312 (435)
.. .++++|||++||....... +++.+++++.+.+.++++..|+.. .+.+.+.++|+.+.+|+|+.++++++|++||
T Consensus 219 ~~~~~~~~~v~vs~Gs~~~~~~~-~~~~~~~al~~~~~~~i~~~g~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~I~ 297 (392)
T TIGR01426 219 ERPGDGRPVVLISLGTVFNNQPS-FYRTCVEAFRDLDWHVVLSVGRGVDPADLGELPPNVEVRQWVPQLEILKKADAFIT 297 (392)
T ss_pred CCCCCCCCEEEEecCccCCCCHH-HHHHHHHHHhcCCCeEEEEECCCCChhHhccCCCCeEEeCCCCHHHHHhhCCEEEE
Confidence 33 3457999999998554444 788899999999999998887553 2344557899999999999999999999999
Q ss_pred eCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHhhcc
Q 013835 313 HGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAEAMEKE 391 (435)
Q Consensus 313 hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~~~~~~ 391 (435)
|||+||+.||+++|+|+|++|...||..|++++++.|+|+ .+...++++++|.++|++++ |++++++++++++++...
T Consensus 298 hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~-~l~~~~~~~~~l~~ai~~~l~~~~~~~~~~~l~~~~~~~ 376 (392)
T TIGR01426 298 HGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGR-HLPPEEVTAEKLREAVLAVLSDPRYAERLRKMRAEIREA 376 (392)
T ss_pred CCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEE-EeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999997 88888889999999999999 999999999999999999
Q ss_pred CcHHHHHHHHHHhcc
Q 013835 392 DGVTGAVKAFFKHYS 406 (435)
Q Consensus 392 ~~~~~~~~~i~~~l~ 406 (435)
++.+++++.|+++++
T Consensus 377 ~~~~~aa~~i~~~~~ 391 (392)
T TIGR01426 377 GGARRAADEIEGFLA 391 (392)
T ss_pred CCHHHHHHHHHHhhc
Confidence 999999999998765
No 4
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.2e-48 Score=386.05 Aligned_cols=410 Identities=21% Similarity=0.231 Sum_probs=224.8
Q ss_pred CCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHH--HHhcCceeEEccccccCCCCCCCCCch-hhHHH------HHHH-
Q 013835 5 GTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDF--VLTAGLEFYPLDMVKNKGFLPSGPSEI-PVQRN------QMKE- 74 (435)
Q Consensus 5 ~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~--~~~~g~~~~~i~~~~~~~~~~~~~~~~-~~~~~------~~~~- 74 (435)
.++||+.++..++++|++|||+||++++...... ....++.+..++............... ..... .+..
T Consensus 8 ~~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (500)
T PF00201_consen 8 MAYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNPSKPSNIRFETYPDPYPEEEFEEIFPEFISKFFSESSFANSFWEM 87 (500)
T ss_dssp ----SHHHHHHHHHHHHHH-TTSEEEHHHHHHT------S-CCEEEE-----TT------TTHHHHHHHHHCCHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhcCCceEEEEeecccccccccccceeeEEEcCCcchHHHhhhhHHHHHHHhhhcccchhHHHH
Confidence 4789999999999999999999999986542211 234556666554211111111111111 10000 1111
Q ss_pred ------HHHHHHhhcc-----CCCccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCC---C-CC-CCCCCCc
Q 013835 75 ------IIYSLLPACR-----DPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWT---P-TS-EFPHPLS 138 (435)
Q Consensus 75 ------~~~~~~~~~~-----~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~---~-~~-~~p~~~~ 138 (435)
+.......|. ..+.+.+++.++|++|+|.+..++..+|+.+++|.+.+.+.... . .. ..|.+++
T Consensus 88 ~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~~~~~~~~g~p~~ps 167 (500)
T PF00201_consen 88 FKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMYDLSSFSGGVPSPPS 167 (500)
T ss_dssp HHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCSCCTCCTSCCCTSTT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecccccchhhhhccCCCCChH
Confidence 1112223331 33344566778999999988888889999999999876432111 1 11 3444444
Q ss_pred ccC-------CCccc--hHHHHH---HHHHHHHHHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCCCCcCCCC
Q 013835 139 RVK-------QPAGY--RLSYQI---VDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPK 206 (435)
Q Consensus 139 ~~~-------~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (435)
+.+ +.++. |..... ........+....+.+..+.++.+ ... ..........+.+++..++.|+
T Consensus 168 yvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~l~l~ns~~~ld~pr 242 (500)
T PF00201_consen 168 YVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFP-FSF----RELLSNASLVLINSHPSLDFPR 242 (500)
T ss_dssp STTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-G-GGC----HHHHHHHHHCCSSTEEE----H
T ss_pred HhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccc-ccc----HHHHHHHHHHhhhccccCcCCc
Confidence 433 22222 111000 000000000000111111111110 000 0000011223334555567788
Q ss_pred CCCCCCeeeecccccCCCCCCCchHHHHHHHc--CCCcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCC
Q 013835 207 DWGPKVDVVGFCFLDLASNYEPPESLVKWLEA--GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGN 284 (435)
Q Consensus 207 ~~~~~~~~vG~~~~~~~~~~~~~~~l~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~ 284 (435)
+.+|++.++|++.... ..+.+++++.|++. .+++||||+||.....+++..+.+++++++.++++||...+..
T Consensus 243 p~~p~v~~vGgl~~~~--~~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~--- 317 (500)
T PF00201_consen 243 PLLPNVVEVGGLHIKP--AKPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEP--- 317 (500)
T ss_dssp HHHCTSTTGCGC-S------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSH---
T ss_pred chhhcccccCcccccc--ccccccccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHHhhCCCcccccccccc---
Confidence 8899999999986543 34678899999987 3469999999997777888889999999999999998875522
Q ss_pred CCCCCCceEEcCCCChhhh--cccccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCH
Q 013835 285 LAEPKDSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSL 362 (435)
Q Consensus 285 ~~~~~~~v~~~~~~p~~~~--l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~ 362 (435)
...+++|+.+.+|+||.++ ++++++||||||+||+.||+++|||+|++|.++||..||+++++.|+|+ .++..+++.
T Consensus 318 ~~~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~-~l~~~~~~~ 396 (500)
T PF00201_consen 318 PENLPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGV-VLDKNDLTE 396 (500)
T ss_dssp GCHHHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEE-EEGGGC-SH
T ss_pred cccccceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEE-EEEecCCcH
Confidence 2346789999999999999 6889999999999999999999999999999999999999999999998 899999999
Q ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhhcc--CcHHHHHHHHHHhccccCCCCCCCCCCCCCCCcceee
Q 013835 363 PKLINAINFML-DPKVKERAVELAEAMEKE--DGVTGAVKAFFKHYSRSKTQPKPERETSPEPSRFFSI 428 (435)
Q Consensus 363 ~~l~~~i~~ll-~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 428 (435)
++|.++|+++| |++|+++++++++.++++ .+.++++.++|..++..+.. ++++...++-|||-
T Consensus 397 ~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~p~~p~~~~~~~ie~v~~~~~~~---~l~~~~~~l~~~~~ 462 (500)
T PF00201_consen 397 EELRAAIREVLENPSYKENAKRLSSLFRDRPISPLERAVWWIEYVARHGGAP---HLRSPARDLSFYQY 462 (500)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHHHTTT-----------------------------------------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCCc---ccCChhhcCCHHHH
Confidence 99999999999 999999999999999986 57889999999999877643 77777777888763
No 5
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.8e-44 Score=343.71 Aligned_cols=390 Identities=15% Similarity=0.179 Sum_probs=246.6
Q ss_pred CcccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHh------cCceeEEccccccCCCCCC--CCCchhhH-HHH
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLT------AGLEFYPLDMVKNKGFLPS--GPSEIPVQ-RNQ 71 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~------~g~~~~~i~~~~~~~~~~~--~~~~~~~~-~~~ 71 (435)
++|||++||++|++.||+.|+.||+.|||++++.....+.. .++.++.++.+...+.... ...++... ...
T Consensus 11 l~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~~~~~~~~~~ 90 (472)
T PLN02670 11 MFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESSTDVPYTKQQL 90 (472)
T ss_pred EeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCcccccccchhhHHH
Confidence 57999999999999999999999999999987654433331 3578888875432222111 01111100 011
Q ss_pred HHHHHHHHHhhccCCCccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCCC------------CCCC---
Q 013835 72 MKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTSE------------FPHP--- 136 (435)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~~------------~p~~--- 136 (435)
+..... .+...+.+.+++.+|++||+|.+..|+..+|+.+|||.+.+++++...... ++..
T Consensus 91 ~~~~~~----~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 166 (472)
T PLN02670 91 LKKAFD----LLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGDLRSTAED 166 (472)
T ss_pred HHHHHH----HhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcccCCCcccc
Confidence 111111 111111111222378999999999999999999999999997754321100 0000
Q ss_pred CcccCC--C--ccchHHHHHHHHHHHHH--HhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCCC-C----cCCC
Q 013835 137 LSRVKQ--P--AGYRLSYQIVDSLIWLG--IRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPH-L----VPKP 205 (435)
Q Consensus 137 ~~~~~~--~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~ 205 (435)
....+. | ....+....+...+... .......+.+....... ......++-. + +...
T Consensus 167 ~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~gvlvNTf~eLE~~~l~~l 233 (472)
T PLN02670 167 FTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGG-------------SDVVIIRSSPEFEPEWFDLL 233 (472)
T ss_pred ccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhccc-------------CCEEEEeCHHHHhHHHHHHH
Confidence 000000 0 00001111111111000 00001111110000110 0112222211 1 1111
Q ss_pred C-CCCCCCeeeeccccc--CCCCCC--C---chHHHHHHHcCC--CcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEE
Q 013835 206 K-DWGPKVDVVGFCFLD--LASNYE--P---PESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGII 275 (435)
Q Consensus 206 ~-~~~~~~~~vG~~~~~--~~~~~~--~---~~~l~~~~~~~~--~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv 275 (435)
+ ...+.+..|||+... ...... . .+++.+|+++++ .+|||++||......+ .++.++.+|+..+.+|+|
T Consensus 234 ~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~-q~~ela~gl~~s~~~FlW 312 (472)
T PLN02670 234 SDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRRE-EVTELALGLEKSETPFFW 312 (472)
T ss_pred HHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHH-HHHHHHHHHHHCCCCEEE
Confidence 1 112467889998532 111000 1 146889999864 5999999999765555 557799999999999999
Q ss_pred EcCCC-CC--CCCCCCCCc---------eEEcCCCChhhh--cccccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhH
Q 013835 276 NKGWG-GL--GNLAEPKDS---------IYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFW 341 (435)
Q Consensus 276 ~~~~~-~~--~~~~~~~~~---------v~~~~~~p~~~~--l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~n 341 (435)
+.... +. +....+|++ +++.+|+||.++ |+++++|||||||||++||+++|||||++|.+.||..|
T Consensus 313 v~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~N 392 (472)
T PLN02670 313 VLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLN 392 (472)
T ss_pred EEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHH
Confidence 98642 11 111124443 777899999999 57788899999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCC----CCCHHHHHHHHHHhc-CH---HHHHHHHHHHHHhhccCcHHHHHHHHHHhccccC
Q 013835 342 GERVHARGVGPPPIPVD----EFSLPKLINAINFML-DP---KVKERAVELAEAMEKEDGVTGAVKAFFKHYSRSK 409 (435)
Q Consensus 342 a~~v~~~g~G~~~l~~~----~~~~~~l~~~i~~ll-~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 409 (435)
|+++++.|+|+ .++.. .++.++|+++|+++| ++ +||++++++++.++++++..++++.+++.+....
T Consensus 393 a~~v~~~g~Gv-~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 393 TRLLHGKKLGL-EVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLRENR 467 (472)
T ss_pred HHHHHHcCeeE-EeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhc
Confidence 99999999998 77543 378999999999999 75 7999999999999999999999999999997765
No 6
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-44 Score=336.64 Aligned_cols=389 Identities=25% Similarity=0.354 Sum_probs=259.8
Q ss_pred CcccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHhcCceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHHH
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLL 80 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
|+..|+.||++|+++|+++|.++||+|+|+|.+++.+.++++|+.|..++..........+..... ..+.. .....
T Consensus 6 ~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~ag~~f~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~ 81 (406)
T COG1819 6 FVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAAGLAFVAYPIRDSELATEDGKFAGV---KSFRR-LLQQF 81 (406)
T ss_pred EEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHhCcceeeccccCChhhhhhhhhhcc---chhHH-Hhhhh
Confidence 467788999999999999999999999999999999999999977777763211000000000000 00100 00111
Q ss_pred hhccCCCccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCC--CCCCCCcccC----CCccchHHHHHHH
Q 013835 81 PACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTS--EFPHPLSRVK----QPAGYRLSYQIVD 154 (435)
Q Consensus 81 ~~~~~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~--~~p~~~~~~~----~~~~~~~~~~~~~ 154 (435)
......+.+.+.+..||+|+.|.....+ ++++..++|++......+.... ..|.+..... .+... .......
T Consensus 82 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 159 (406)
T COG1819 82 KKLIRELLELLRELEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGKLPIPLYP-LPPRLVR 159 (406)
T ss_pred hhhhHHHHHHHHhcchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCcccccccccccccccc-cChhhcc
Confidence 1111122234556699999998665554 8999999999887665554321 1121111100 00000 0000000
Q ss_pred HHHHHHHhHHHHHHHHhccCCCC-CCCCCCCCCCCCCCCeeEeeCCCCcCCC-CCCCCCCeeeecccccCCCCCCCchHH
Q 013835 155 SLIWLGIRDMINDVRKKKLKLRP-VTYLSGSQGFDSDVPHGYIWSPHLVPKP-KDWGPKVDVVGFCFLDLASNYEPPESL 232 (435)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vG~~~~~~~~~~~~~~~l 232 (435)
+.............+. ..++.. ...+...+...+.....+ .+. .+.+ ...+....++||... ....+.
T Consensus 160 ~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~p~~~~~~~~~~~------~~~~~~ 229 (406)
T COG1819 160 PLIFARSWLPKLVVRR-NLGLELGLPNIRRLFASGPLLEIAY-TDV--LFPPGDRLPFIGPYIGPLLG------EAANEL 229 (406)
T ss_pred ccccchhhhhhhhhhh-hccccccccchHHHhcCCCCccccc-ccc--ccCCCCCCCCCcCccccccc------cccccC
Confidence 0000000000111111 011110 000111111111111111 111 1112 455667778887643 223334
Q ss_pred HHHHHcCCCcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEE
Q 013835 233 VKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVH 312 (435)
Q Consensus 233 ~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~l~I~ 312 (435)
..|...++|+||+++||.... .++++.+++++.+.+.++|+.++..+ .....+|+|+.+.+|+||.+++++||+|||
T Consensus 230 ~~~~~~d~~~vyvslGt~~~~--~~l~~~~~~a~~~l~~~vi~~~~~~~-~~~~~~p~n~~v~~~~p~~~~l~~ad~vI~ 306 (406)
T COG1819 230 PYWIPADRPIVYVSLGTVGNA--VELLAIVLEALADLDVRVIVSLGGAR-DTLVNVPDNVIVADYVPQLELLPRADAVIH 306 (406)
T ss_pred cchhcCCCCeEEEEcCCcccH--HHHHHHHHHHHhcCCcEEEEeccccc-cccccCCCceEEecCCCHHHHhhhcCEEEe
Confidence 444556788999999999765 77999999999999999999997733 356679999999999999999999999999
Q ss_pred eCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHhhcc
Q 013835 313 HGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAEAMEKE 391 (435)
Q Consensus 313 hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~~~~~~ 391 (435)
|||+||++|||++|||+|++|...||..||.++++.|+|+ .+..+.++.+.++++|+++| |+.|++++.++++.+...
T Consensus 307 hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~-~l~~~~l~~~~l~~av~~vL~~~~~~~~~~~~~~~~~~~ 385 (406)
T COG1819 307 HGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGI-ALPFEELTEERLRAAVNEVLADDSYRRAAERLAEEFKEE 385 (406)
T ss_pred cCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCce-ecCcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999997 89988999999999999999 999999999999999999
Q ss_pred CcHHHHHHHHHHhccccC
Q 013835 392 DGVTGAVKAFFKHYSRSK 409 (435)
Q Consensus 392 ~~~~~~~~~i~~~l~~~~ 409 (435)
++.+.+++.|+++.++..
T Consensus 386 ~g~~~~a~~le~~~~~~~ 403 (406)
T COG1819 386 DGPAKAADLLEEFAREKK 403 (406)
T ss_pred ccHHHHHHHHHHHHhccc
Confidence 999999999999887765
No 7
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.7e-42 Score=329.44 Aligned_cols=385 Identities=18% Similarity=0.227 Sum_probs=236.9
Q ss_pred CcccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHhc-----CceeEEccccccCCCCCCCCCchhhHHHHHHHH
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTA-----GLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEI 75 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (435)
++|++++||++|++.||+.|+.+|++|||+++......+... ++.+..++.....+. +.+..........+...
T Consensus 9 ~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgL-p~g~~~~~~l~~~l~~~ 87 (442)
T PLN02208 9 MFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGL-PAGAETTSDIPISMDNL 87 (442)
T ss_pred EecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCC-CCCcccccchhHHHHHH
Confidence 579999999999999999999999999999977766555433 344555543211111 11111000111111222
Q ss_pred HHHHHhhccCCCccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCC--CCCC-----CCcccCCCccchH
Q 013835 76 IYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTS--EFPH-----PLSRVKQPAGYRL 148 (435)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~--~~p~-----~~~~~~~~~~~~~ 148 (435)
+........+.+.+.+++.+||+||+|+ ..|+..+|+.+|||.+.+++++..... .++. +...++... ..+
T Consensus 88 ~~~~~~~~~~~l~~~L~~~~~~cVV~D~-~~wa~~vA~e~giP~~~f~~~~a~~~~~~~~~~~~~~~~~pglp~~~-~~~ 165 (442)
T PLN02208 88 LSEALDLTRDQVEAAVRALRPDLIFFDF-AQWIPEMAKEHMIKSVSYIIVSATTIAHTHVPGGKLGVPPPGYPSSK-VLF 165 (442)
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEEECC-cHhHHHHHHHhCCCEEEEEhhhHHHHHHHccCccccCCCCCCCCCcc-ccc
Confidence 2222222222333334445899999995 678889999999999999886443211 1110 000111000 000
Q ss_pred HHHHHHHH--HHHHHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCC-CC----c-CCCCCCCCCCeeeecccc
Q 013835 149 SYQIVDSL--IWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSP-HL----V-PKPKDWGPKVDVVGFCFL 220 (435)
Q Consensus 149 ~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~----~-~~~~~~~~~~~~vG~~~~ 220 (435)
........ ....+....+.+.+ .....+ ....++- ++ . ...+.+.+++..+||+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~ 229 (442)
T PLN02208 166 RENDAHALATLSIFYKRLYHQITT---GLKSCD-------------VIALRTCKEIEGKFCDYISRQYHKKVLLTGPMFP 229 (442)
T ss_pred CHHHcCcccccchHHHHHHHHHHh---hhccCC-------------EEEEECHHHHHHHHHHHHHhhcCCCEEEEeeccc
Confidence 00000000 00001111111111 011011 1111211 11 1 112234578999999875
Q ss_pred cCCCCCCCchHHHHHHHcCC--CcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCC-CC-CCCCCCC-------
Q 013835 221 DLASNYEPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWG-GL-GNLAEPK------- 289 (435)
Q Consensus 221 ~~~~~~~~~~~l~~~~~~~~--~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~-~~-~~~~~~~------- 289 (435)
........++++.+|++.++ .+||||+||......+++.+.+ ..++..+.+++|+.... +. +....+|
T Consensus 230 ~~~~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~-~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~ 308 (442)
T PLN02208 230 EPDTSKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELC-LGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERV 308 (442)
T ss_pred CcCCCCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHH-HHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHH
Confidence 33212235678999999764 5999999999866666666644 44444455555554332 11 1111244
Q ss_pred --CceEEcCCCChhhh--cccccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHH-cCCCCCCCCCCC---CC
Q 013835 290 --DSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHA-RGVGPPPIPVDE---FS 361 (435)
Q Consensus 290 --~~v~~~~~~p~~~~--l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~-~g~G~~~l~~~~---~~ 361 (435)
.|+++.+|+||.++ |+++.+|||||||||++||+++|||||++|.++||..||+++.+ .|+|+ .++.++ ++
T Consensus 309 ~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv-~~~~~~~~~~~ 387 (442)
T PLN02208 309 KGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSV-EVSREKTGWFS 387 (442)
T ss_pred hcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeE-EeccccCCcCc
Confidence 68888899999999 78888999999999999999999999999999999999998765 89998 786544 79
Q ss_pred HHHHHHHHHHhc-CH-----HHHHHHHHHHHHhhccCcHHHHHHHHHHhcc
Q 013835 362 LPKLINAINFML-DP-----KVKERAVELAEAMEKEDGVTGAVKAFFKHYS 406 (435)
Q Consensus 362 ~~~l~~~i~~ll-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 406 (435)
.++|.++|++++ ++ ++|++++++++.+.+.++..+.++.+.+.+.
T Consensus 388 ~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~~gsS~~~l~~~v~~l~ 438 (442)
T PLN02208 388 KESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVSPGLLTGYVDKFVEELQ 438 (442)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999999999 64 3999999999998776666666666655443
No 8
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.9e-42 Score=330.91 Aligned_cols=381 Identities=15% Similarity=0.128 Sum_probs=238.3
Q ss_pred CcccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHhc-----CceeEEccccccCCCCCCCCCchhhHHHHHHHH
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTA-----GLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEI 75 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (435)
++|+|++||++|++.||+.|+.+|++|||+++......+... ++.++.++..... ..+..+......+...
T Consensus 11 lvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~----~~~~~~~~l~~a~~~~ 86 (448)
T PLN02562 11 LVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDD----DPPRDFFSIENSMENT 86 (448)
T ss_pred EEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCC----CccccHHHHHHHHHHh
Confidence 479999999999999999999999999999877655444432 6888888731111 0011121111111111
Q ss_pred HHHHHhhccCCCccCCccc-CcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCC------------CCCCC---C--
Q 013835 76 IYSLLPACRDPDLDSGIAF-KADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTS------------EFPHP---L-- 137 (435)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~-~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~------------~~p~~---~-- 137 (435)
....+....+. ++.. .+++||+|.+..|+..+|+++|||.+.+++++..... .++.. .
T Consensus 87 ~~~~l~~ll~~----l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (448)
T PLN02562 87 MPPQLERLLHK----LDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGCPRQL 162 (448)
T ss_pred chHHHHHHHHH----hcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccccccccc
Confidence 11111111111 1111 3489999999999999999999999999886432100 00000 0
Q ss_pred ccc-CCCccchHHHHHHHHHHHHH--HhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCC-CCcC---------C
Q 013835 138 SRV-KQPAGYRLSYQIVDSLIWLG--IRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSP-HLVP---------K 204 (435)
Q Consensus 138 ~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------~ 204 (435)
... ..|....+........+... .......+.+......... ....++- ++.+ .
T Consensus 163 ~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~vlvNTf~eLE~~~~~~~~~~~ 229 (448)
T PLN02562 163 EKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLR-------------WILMNSFKDEEYDDVKNHQASY 229 (448)
T ss_pred cccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCC-------------EEEEcChhhhCHHHHHHHHhhh
Confidence 000 00100001111111100000 0000111111000011001 1111221 1111 1
Q ss_pred CCCCCCCCeeeecccccCCC----C--CCCchHHHHHHHcCC--CcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEE
Q 013835 205 PKDWGPKVDVVGFCFLDLAS----N--YEPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIIN 276 (435)
Q Consensus 205 ~~~~~~~~~~vG~~~~~~~~----~--~~~~~~l~~~~~~~~--~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~ 276 (435)
+++..+++..+||+...... . .+.+.++.+|+++++ .+|||++||.....+.+.++.++.+++..+.+|||+
T Consensus 230 ~~~~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~ 309 (448)
T PLN02562 230 NNGQNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWV 309 (448)
T ss_pred ccccCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 23345789999999653211 1 122345779999864 399999999754445667888999999999999998
Q ss_pred cCCCCCCCCCC-----CCCceEEcCCCChhhhc--ccccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHH-c
Q 013835 277 KGWGGLGNLAE-----PKDSIYLLDNIPHDWLF--LQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHA-R 348 (435)
Q Consensus 277 ~~~~~~~~~~~-----~~~~v~~~~~~p~~~~l--~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~-~ 348 (435)
.+....+.+++ .++|+.+++|+||.+++ +++.+|||||||||++||+++|||+|++|.++||+.||+++++ .
T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~ 389 (448)
T PLN02562 310 LNPVWREGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVW 389 (448)
T ss_pred EcCCchhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHh
Confidence 75322112322 46899999999999995 5577999999999999999999999999999999999999987 4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHhhcc---CcHHHHHHHHHHhc
Q 013835 349 GVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAEAMEKE---DGVTGAVKAFFKHY 405 (435)
Q Consensus 349 g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~l 405 (435)
|+|+ .+ ++.+.++++++|++++ |++||+++++++++.... ++..+..+.+.+.+
T Consensus 390 g~g~-~~--~~~~~~~l~~~v~~~l~~~~~r~~a~~l~~~~~~~~~gGSS~~nl~~~v~~~ 447 (448)
T PLN02562 390 KIGV-RI--SGFGQKEVEEGLRKVMEDSGMGERLMKLRERAMGEEARLRSMMNFTTLKDEL 447 (448)
T ss_pred Ccee-Ee--CCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 8886 55 3578999999999999 999999999999988764 34556666655443
No 9
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=1.1e-42 Score=331.00 Aligned_cols=382 Identities=18% Similarity=0.190 Sum_probs=230.7
Q ss_pred CcccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHhc-----CceeEEccccccCCCCCCCCCchhhHHHHHHHH
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTA-----GLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEI 75 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (435)
++|+|++||++|++.||+.|+.+|++|||++++.....+... ++.|..++.+...+. +.+..............
T Consensus 9 lvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGL-P~g~e~~~~l~~~~~~~ 87 (446)
T PLN00414 9 MYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGL-PFGAETASDLPNSTKKP 87 (446)
T ss_pred EecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCC-CCcccccccchhhHHHH
Confidence 589999999999999999999999999999987655544321 366755542221111 11111110000111111
Q ss_pred HHHHHhhccCCCccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCC---------CCCCCCcccCCCc-c
Q 013835 76 IYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTS---------EFPHPLSRVKQPA-G 145 (435)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~---------~~p~~~~~~~~~~-~ 145 (435)
+......+...+.+.++..+||+||+|+ ..|+..+|+.+|||.+.+++++..... ..|.+ .++... .
T Consensus 88 ~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~~~~~~p--g~p~~~~~ 164 (446)
T PLN00414 88 IFDAMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAELGFPPP--DYPLSKVA 164 (446)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhhcCCCCC--CCCCCcCc
Confidence 1111112222222233345899999996 778899999999999999886542110 01110 011000 0
Q ss_pred chHHHHHHHHHHHHHHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCC-CC----cCCCC-CCCCCCeeeeccc
Q 013835 146 YRLSYQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSP-HL----VPKPK-DWGPKVDVVGFCF 219 (435)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~-~~~~~~~~vG~~~ 219 (435)
.+.........+.. ....+.+..+ ...... ....++- ++ +...+ ..++.+..+||+.
T Consensus 165 ~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~-------------~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPl~ 227 (446)
T PLN00414 165 LRGHDANVCSLFAN-SHELFGLITK---GLKNCD-------------VVSIRTCVELEGNLCDFIERQCQRKVLLTGPML 227 (446)
T ss_pred Cchhhcccchhhcc-cHHHHHHHHH---hhccCC-------------EEEEechHHHHHHHHHHHHHhcCCCeEEEcccC
Confidence 00000000000000 0011111111 000000 1111221 11 11111 1234577899985
Q ss_pred ccCCC--CCCCchHHHHHHHcCC--CcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCC-CC----CCCCC---
Q 013835 220 LDLAS--NYEPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWG-GL----GNLAE--- 287 (435)
Q Consensus 220 ~~~~~--~~~~~~~l~~~~~~~~--~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~-~~----~~~~~--- 287 (435)
..... .....+++.+|+|.++ .+|||++||......+++.+ +..+++..+.+|+|+.... .. +.+++
T Consensus 228 ~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e-~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~ 306 (446)
T PLN00414 228 PEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQE-FCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFE 306 (446)
T ss_pred CCcccccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHH-HHHHHHHcCCCeEEEEecCCCcccchhhCChhHH
Confidence 32211 1112346889999866 39999999998777777655 7788888999999988542 10 11211
Q ss_pred ---CCCceEEcCCCChhhhc--ccccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHHHHH-HcCCCCCCCCCC---
Q 013835 288 ---PKDSIYLLDNIPHDWLF--LQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVH-ARGVGPPPIPVD--- 358 (435)
Q Consensus 288 ---~~~~v~~~~~~p~~~~l--~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~-~~g~G~~~l~~~--- 358 (435)
...+.++.+|+||.++| +++++|||||||||++||+++|||+|++|.+.||..||++++ +.|+|+ .+..+
T Consensus 307 ~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~-~~~~~~~~ 385 (446)
T PLN00414 307 ERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSV-KVQREDSG 385 (446)
T ss_pred HHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEE-EeccccCC
Confidence 12344556999999995 666889999999999999999999999999999999999995 679997 77533
Q ss_pred CCCHHHHHHHHHHhc-CH-----HHHHHHHHHHHHhhccCc-HHHHHHHHHHhcc
Q 013835 359 EFSLPKLINAINFML-DP-----KVKERAVELAEAMEKEDG-VTGAVKAFFKHYS 406 (435)
Q Consensus 359 ~~~~~~l~~~i~~ll-~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~l~ 406 (435)
..+.+++++++++++ ++ ++|++++++++.+.+.+| ... ++.+.+.++
T Consensus 386 ~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~~gg~ss~-l~~~v~~~~ 439 (446)
T PLN00414 386 WFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVSPGLLSGY-ADKFVEALE 439 (446)
T ss_pred ccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCcHHH-HHHHHHHHH
Confidence 379999999999999 64 389999999999988777 444 344443333
No 10
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=8.4e-42 Score=329.10 Aligned_cols=383 Identities=16% Similarity=0.182 Sum_probs=239.0
Q ss_pred CcccCCccchhHHHHHHHHHHHC--CCeEEEEeCCCcHHHHHhc----CceeEEccccccCCCCCCCCCchhhHHHHHHH
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQDY--GHRVRLATHSNFKDFVLTA----GLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKE 74 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~r--Gh~V~~~~~~~~~~~~~~~----g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (435)
++++|++||++|++.||++|+.+ ||+|||++++.+...+... |++|+.++....... ... .++......+..
T Consensus 15 lvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~p~~~-~~~-~~~~~~~~~~~~ 92 (459)
T PLN02448 15 AMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNVIPSEL-VRA-ADFPGFLEAVMT 92 (459)
T ss_pred EECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCCCCCcc-ccc-cCHHHHHHHHHH
Confidence 57999999999999999999999 9999999988877666653 899999873111110 001 111111111111
Q ss_pred HHHHHHhhccCCCccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCC---C---------CCCCCc----
Q 013835 75 IIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTS---E---------FPHPLS---- 138 (435)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~---~---------~p~~~~---- 138 (435)
.....+....+.+ . .++|+||+|.+..|+..+|+++|||.+.+++++..... . .|....
T Consensus 93 ~~~~~~~~~l~~~----~-~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (459)
T PLN02448 93 KMEAPFEQLLDRL----E-PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVELSESGE 167 (459)
T ss_pred HhHHHHHHHHHhc----C-CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCccccccC
Confidence 1111122222111 1 26899999999999999999999999999887642110 0 011000
Q ss_pred c-c-CCCccchHHHHHHHHHHHHHHhHHHHHHHHhccC-CCCCCCCCCCCCCCCCCCeeEeeCCC-CcCC-----CCCCC
Q 013835 139 R-V-KQPAGYRLSYQIVDSLIWLGIRDMINDVRKKKLK-LRPVTYLSGSQGFDSDVPHGYIWSPH-LVPK-----PKDWG 209 (435)
Q Consensus 139 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~ 209 (435)
. . ..|....+........+........+.+... .. .... ..+..++-. +.+. ...++
T Consensus 168 ~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~vlvNTf~eLE~~~~~~l~~~~~ 233 (459)
T PLN02448 168 ERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEA-FSWVPKA-------------QYLLFTSFYELEAQAIDALKSKFP 233 (459)
T ss_pred CccccCCCCCCCChHHCchhhcCCchHHHHHHHHH-HhhcccC-------------CEEEEccHHHhhHHHHHHHHhhcC
Confidence 0 0 0010000111111111100000111122211 10 0000 011112211 1111 11223
Q ss_pred CCCeeeecccccCCC-------CCC-CchHHHHHHHcCC--CcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCC
Q 013835 210 PKVDVVGFCFLDLAS-------NYE-PPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGW 279 (435)
Q Consensus 210 ~~~~~vG~~~~~~~~-------~~~-~~~~l~~~~~~~~--~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~ 279 (435)
+++..+||+...... ... .+.++.+|++.++ ++|||++||...... +.++.++++++..+.+|||+...
T Consensus 234 ~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~-~~~~~~~~~l~~~~~~~lw~~~~ 312 (459)
T PLN02448 234 FPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSS-AQMDEIAAGLRDSGVRFLWVARG 312 (459)
T ss_pred CceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCH-HHHHHHHHHHHhCCCCEEEEEcC
Confidence 467778987532110 011 1247889998753 499999999866544 45788999999999999987643
Q ss_pred CCCCCCCC-CCCceEEcCCCChhhhc--ccccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHH-cCCCCCCC
Q 013835 280 GGLGNLAE-PKDSIYLLDNIPHDWLF--LQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHA-RGVGPPPI 355 (435)
Q Consensus 280 ~~~~~~~~-~~~~v~~~~~~p~~~~l--~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~-~g~G~~~l 355 (435)
. ...+.+ .++|+.+.+|+||.++| +++++|||||||||++||+++|||||++|...||+.||+++++ .|+|+ .+
T Consensus 313 ~-~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~-~~ 390 (459)
T PLN02448 313 E-ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGW-RV 390 (459)
T ss_pred c-hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceE-EE
Confidence 2 122333 34689999999999995 5566799999999999999999999999999999999999998 48886 55
Q ss_pred CC-----CCCCHHHHHHHHHHhc-CH-----HHHHHHHHHHHHhhcc----CcHHHHHHHHHHhccc
Q 013835 356 PV-----DEFSLPKLINAINFML-DP-----KVKERAVELAEAMEKE----DGVTGAVKAFFKHYSR 407 (435)
Q Consensus 356 ~~-----~~~~~~~l~~~i~~ll-~~-----~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~l~~ 407 (435)
.. ...++++|+++++++| ++ ++|++++++++...+. ++..+..+.+.+.+.+
T Consensus 391 ~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 391 KREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred ecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 32 2468999999999999 64 7999999999887653 3466777776665553
No 11
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.2e-41 Score=326.60 Aligned_cols=390 Identities=18% Similarity=0.147 Sum_probs=237.0
Q ss_pred CcccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHh-----cCceeEEccccccCCCCCCCCC---chh-hHHHH
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLT-----AGLEFYPLDMVKNKGFLPSGPS---EIP-VQRNQ 71 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~-----~g~~~~~i~~~~~~~~~~~~~~---~~~-~~~~~ 71 (435)
++|||++||++||+.||+.|+.+|+.|||++++.....+.. .++.++.++.+...+. +.+.. ++. .....
T Consensus 14 l~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~l-PdG~~~~~~~~~~~~~~ 92 (477)
T PLN02863 14 VFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSI-PSGVENVKDLPPSGFPL 92 (477)
T ss_pred EecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCC-CCCCcChhhcchhhHHH
Confidence 57999999999999999999999999999987765444432 2467766654322111 11111 111 00111
Q ss_pred HHHHHHHHHhhccCCCccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCC-------CCCCC---Cc---
Q 013835 72 MKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTS-------EFPHP---LS--- 138 (435)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~-------~~p~~---~~--- 138 (435)
+............+.+.+. ..+|++||+|.+..|+..+|+.+|||.+.+++++..... ..|.. ..
T Consensus 93 ~~~a~~~~~~~~~~~l~~~--~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~~ 170 (477)
T PLN02863 93 MIHALGELYAPLLSWFRSH--PSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTKINPDDQNE 170 (477)
T ss_pred HHHHHHHhHHHHHHHHHhC--CCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccccccccccccc
Confidence 1111111111111111111 136799999999999999999999999999986543210 11110 00
Q ss_pred cc---CCCccchHHHHHHHHHHHH--HHhHHHHHHHHhccC-CCCCCCCCCCCCCCCCCCeeEeeCC-CC----cCCCC-
Q 013835 139 RV---KQPAGYRLSYQIVDSLIWL--GIRDMINDVRKKKLK-LRPVTYLSGSQGFDSDVPHGYIWSP-HL----VPKPK- 206 (435)
Q Consensus 139 ~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~- 206 (435)
.. ..|....+....+...... ........+.+. .. ... .+ .+..++- ++ +...+
T Consensus 171 ~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~-~~~~~~-----------~~--~vlvNTf~eLE~~~~~~~~~ 236 (477)
T PLN02863 171 ILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDS-FRANIA-----------SW--GLVVNSFTELEGIYLEHLKK 236 (477)
T ss_pred ccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHH-Hhhhcc-----------CC--EEEEecHHHHHHHHHHHHHh
Confidence 00 0010010111111110000 000000111110 00 000 00 1111211 11 11111
Q ss_pred CCC-CCCeeeecccccCCC----------CCCCchHHHHHHHcCC--CcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeE
Q 013835 207 DWG-PKVDVVGFCFLDLAS----------NYEPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRG 273 (435)
Q Consensus 207 ~~~-~~~~~vG~~~~~~~~----------~~~~~~~l~~~~~~~~--~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~ 273 (435)
.+. +++..+||+...... ....++++.+|++.++ ++|||++||......++ ++.++.+++..+.+|
T Consensus 237 ~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~-~~ela~gL~~~~~~f 315 (477)
T PLN02863 237 ELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQ-MEALASGLEKSGVHF 315 (477)
T ss_pred hcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHH-HHHHHHHHHhCCCcE
Confidence 122 456778888532210 0112457999999864 59999999997666655 677999999999999
Q ss_pred EEEcCCCCCC--CCCCCC---------CceEEcCCCChhhhc--ccccEEEEeCCchHHHHHHHhCCCEEeecCCCChhh
Q 013835 274 IINKGWGGLG--NLAEPK---------DSIYLLDNIPHDWLF--LQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPF 340 (435)
Q Consensus 274 iv~~~~~~~~--~~~~~~---------~~v~~~~~~p~~~~l--~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~ 340 (435)
||+.+..... ....+| .++++.+|+||.++| +++++|||||||||++||+++|||+|++|++.||+.
T Consensus 316 lw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~ 395 (477)
T PLN02863 316 IWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFV 395 (477)
T ss_pred EEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchh
Confidence 9998643211 111233 467888999999994 569999999999999999999999999999999999
Q ss_pred HHHHHH-HcCCCCCCCCC---CCCCHHHHHHHHHHhc--CHHHHHHHHHHHHHhhcc----CcHHHHHHHHHHhccccC
Q 013835 341 WGERVH-ARGVGPPPIPV---DEFSLPKLINAINFML--DPKVKERAVELAEAMEKE----DGVTGAVKAFFKHYSRSK 409 (435)
Q Consensus 341 na~~v~-~~g~G~~~l~~---~~~~~~~l~~~i~~ll--~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~l~~~~ 409 (435)
||++++ +.|+|+ .+.. ...+.+++.++|++++ +++||++++++++...+. +...+.++.+.+.+...+
T Consensus 396 na~~v~~~~gvG~-~~~~~~~~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~~ 473 (477)
T PLN02863 396 NASLLVDELKVAV-RVCEGADTVPDSDELARVFMESVSENQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVELG 473 (477)
T ss_pred hHHHHHHhhceeE-EeccCCCCCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHhc
Confidence 999976 569997 6632 2347899999999987 799999999999885543 556677777776665443
No 12
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=9.7e-42 Score=326.39 Aligned_cols=375 Identities=19% Similarity=0.236 Sum_probs=231.0
Q ss_pred CcccCCccchhHHHHHHHH--HHHCCCeEEEEeCCCcHHHHHhc-----CceeEEccccccCCCCCCCCCchhhHHHHHH
Q 013835 1 MLIVGTRGDVQPFVAIGKR--LQDYGHRVRLATHSNFKDFVLTA-----GLEFYPLDMVKNKGFLPSGPSEIPVQRNQMK 73 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~--L~~rGh~V~~~~~~~~~~~~~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 73 (435)
|+|+|++||++|++.||+. |++||++|||++++...+.+... .+.+..++ + +............ +.
T Consensus 13 ~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~---~-glp~~~~~~~~~~---~~ 85 (456)
T PLN02210 13 MVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFS---D-GLPKDDPRAPETL---LK 85 (456)
T ss_pred EeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECC---C-CCCCCcccCHHHH---HH
Confidence 5899999999999999999 56999999999887765555432 23333332 1 1111100111111 11
Q ss_pred HHHHHHHhhccCCCccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCC---C-------CCCCC---ccc
Q 013835 74 EIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTS---E-------FPHPL---SRV 140 (435)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~---~-------~p~~~---~~~ 140 (435)
.+ ...+...+.+.+++.+||+||+|.+..|+..+|+.+|||.+.+++.+..... . ++... ...
T Consensus 86 ~~----~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (456)
T PLN02210 86 SL----NKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDLEDLNQTV 161 (456)
T ss_pred HH----HHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCcccccCCee
Confidence 11 1111111122233347999999999999999999999999998765442100 0 11000 000
Q ss_pred CCCccchHHHHHHHHHHHH----HHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCCCC-----cCCCCCCCCC
Q 013835 141 KQPAGYRLSYQIVDSLIWL----GIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHL-----VPKPKDWGPK 211 (435)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 211 (435)
..|....+........+.. .+.....++.+. . . .....+.++-.. +...+.. ++
T Consensus 162 ~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~-~--~-------------~~~~vlvNTf~eLE~~~~~~l~~~-~~ 224 (456)
T PLN02210 162 ELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADC-L--R-------------YVKWVLVNSFYELESEIIESMADL-KP 224 (456)
T ss_pred eCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHh-c--c-------------cCCEEEEeCHHHHhHHHHHHHhhc-CC
Confidence 0111110111111110000 011111111110 0 0 011222222111 1111111 36
Q ss_pred Ceeeeccccc-----CCC---------CCCCchHHHHHHHcCC--CcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEE
Q 013835 212 VDVVGFCFLD-----LAS---------NYEPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGII 275 (435)
Q Consensus 212 ~~~vG~~~~~-----~~~---------~~~~~~~l~~~~~~~~--~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv 275 (435)
+..|||+... ... .+..++++.+|+++++ ++|||++||..... .+.++.+..+++..+.+|||
T Consensus 225 v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~-~~~~~e~a~~l~~~~~~flw 303 (456)
T PLN02210 225 VIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESL-ENQVETIAKALKNRGVPFLW 303 (456)
T ss_pred EEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCC-HHHHHHHHHHHHhCCCCEEE
Confidence 7889998531 110 0233556899998753 59999999987654 45678899999999999999
Q ss_pred EcCCCCC----CCCCCC--CCceEEcCCCChhhhcccc--cEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHH
Q 013835 276 NKGWGGL----GNLAEP--KDSIYLLDNIPHDWLFLQC--KAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHA 347 (435)
Q Consensus 276 ~~~~~~~----~~~~~~--~~~v~~~~~~p~~~~l~~~--~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~ 347 (435)
+.+.... +.+.+. +++..+++|+||.++|+++ ++|||||||||++||+++|||||++|.++||+.||+++++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~ 383 (456)
T PLN02210 304 VIRPKEKAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVD 383 (456)
T ss_pred EEeCCccccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHH
Confidence 8864321 111121 3667788999999995555 5999999999999999999999999999999999999997
Q ss_pred -cCCCCCCCCCC----CCCHHHHHHHHHHhc-CH---HHHHHHHHHHHHhhc---c-CcHHHHHHHHHHhc
Q 013835 348 -RGVGPPPIPVD----EFSLPKLINAINFML-DP---KVKERAVELAEAMEK---E-DGVTGAVKAFFKHY 405 (435)
Q Consensus 348 -~g~G~~~l~~~----~~~~~~l~~~i~~ll-~~---~~~~~~~~~~~~~~~---~-~~~~~~~~~i~~~l 405 (435)
.|+|+ .+..+ .++.++|+++|++++ ++ ++|++++++++...+ . ++..+..+.+.+.+
T Consensus 384 ~~g~G~-~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~ 453 (456)
T PLN02210 384 VFGIGV-RMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDI 453 (456)
T ss_pred HhCeEE-EEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 89997 67532 479999999999999 75 499999999887665 2 34556666655544
No 13
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.4e-41 Score=323.90 Aligned_cols=379 Identities=15% Similarity=0.190 Sum_probs=233.6
Q ss_pred CcccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcH-HHHH-hcCceeEEccccccCCCCCCCCC--chhhHHHHH----
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFK-DFVL-TAGLEFYPLDMVKNKGFLPSGPS--EIPVQRNQM---- 72 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~-~~~~-~~g~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~---- 72 (435)
++|++++||++|++.||+.|+.+|+.|||++++... .... ..++++..++.. ....... ........+
T Consensus 12 lvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~~~~~i~~~~ip~g----lp~~~~~~~~~~~~~~~~~~~~ 87 (451)
T PLN02410 12 LVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSDDFTDFQFVTIPES----LPESDFKNLGPIEFLHKLNKEC 87 (451)
T ss_pred EECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccccCCCCeEEEeCCCC----CCcccccccCHHHHHHHHHHHh
Confidence 579999999999999999999999999999765422 1111 135778877621 1110000 111111111
Q ss_pred HHHHHHHHhhccCCCccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCC-----------C--CCCCC--
Q 013835 73 KEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTS-----------E--FPHPL-- 137 (435)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~-----------~--~p~~~-- 137 (435)
..-+..++..... . ..-+|++||+|.+..|+..+|+++|||.+.+++.+..... . .|...
T Consensus 88 ~~~~~~~L~~l~~---~--~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (451)
T PLN02410 88 QVSFKDCLGQLVL---Q--QGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLKEPK 162 (451)
T ss_pred HHHHHHHHHHHHh---c--cCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCccccc
Confidence 1111222221110 0 0125799999999999999999999999999886532110 0 01000
Q ss_pred c--ccCCCccchHHHHHHHHHHHHHHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCCC-C----cCCCC-CCC
Q 013835 138 S--RVKQPAGYRLSYQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPH-L----VPKPK-DWG 209 (435)
Q Consensus 138 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~-~~~ 209 (435)
. ....|....+.........+.........++.. ...... + .+..|+-. + +...+ ...
T Consensus 163 ~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~-----------~--~vlvNTf~eLE~~~~~~l~~~~~ 228 (451)
T PLN02410 163 GQQNELVPEFHPLRCKDFPVSHWASLESIMELYRNT-VDKRTA-----------S--SVIINTASCLESSSLSRLQQQLQ 228 (451)
T ss_pred cCccccCCCCCCCChHHCcchhcCCcHHHHHHHHHH-hhcccC-----------C--EEEEeChHHhhHHHHHHHHhccC
Confidence 0 000011000111111100000000011111110 000100 1 12222211 1 11111 123
Q ss_pred CCCeeeecccccCC--CC-CCCchHHHHHHHcCC--CcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCC---
Q 013835 210 PKVDVVGFCFLDLA--SN-YEPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGG--- 281 (435)
Q Consensus 210 ~~~~~vG~~~~~~~--~~-~~~~~~l~~~~~~~~--~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~--- 281 (435)
+.+..+||+..... .. .....++.+|+++++ .+|||++||......+++ +.+..+|+..+.+|+|+.+...
T Consensus 229 ~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~-~ela~gLe~s~~~FlWv~r~~~~~~ 307 (451)
T PLN02410 229 IPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEV-METASGLDSSNQQFLWVIRPGSVRG 307 (451)
T ss_pred CCEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHH-HHHHHHHHhcCCCeEEEEccCcccc
Confidence 57889999864321 11 122345789999864 499999999987666655 5599999999999999986321
Q ss_pred CC---CCC-----CCCCceEEcCCCChhhh--cccccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHc-CC
Q 013835 282 LG---NLA-----EPKDSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHAR-GV 350 (435)
Q Consensus 282 ~~---~~~-----~~~~~v~~~~~~p~~~~--l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~-g~ 350 (435)
.+ .++ ..++|..+++|+||.++ ++++++|||||||||++||+++|||||++|.++||+.||+++++. |+
T Consensus 308 ~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~ 387 (451)
T PLN02410 308 SEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKI 387 (451)
T ss_pred cchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCe
Confidence 11 122 14588899999999999 556888999999999999999999999999999999999999877 99
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhc-CH---HHHHHHHHHHHHhhc---c-CcHHHHHHHHHHhc
Q 013835 351 GPPPIPVDEFSLPKLINAINFML-DP---KVKERAVELAEAMEK---E-DGVTGAVKAFFKHY 405 (435)
Q Consensus 351 G~~~l~~~~~~~~~l~~~i~~ll-~~---~~~~~~~~~~~~~~~---~-~~~~~~~~~i~~~l 405 (435)
|+ .+. ..++.++|+++|++++ ++ ++|++++++++++++ . ++..+..+.+.+.+
T Consensus 388 G~-~~~-~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~ 448 (451)
T PLN02410 388 GI-QVE-GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFM 448 (451)
T ss_pred eE-EeC-CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 97 675 6789999999999999 64 799999999998875 3 34556555555443
No 14
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.3e-39 Score=315.49 Aligned_cols=388 Identities=16% Similarity=0.114 Sum_probs=230.2
Q ss_pred CcccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHhcCc-----------eeEEccccccCCCCCCCCCchh---
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGL-----------EFYPLDMVKNKGFLPSGPSEIP--- 66 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~~g~-----------~~~~i~~~~~~~~~~~~~~~~~--- 66 (435)
|+++|++||++|++.||+.|+.||++|||++++.....+...+- .+..++.+......+.+.....
T Consensus 10 lvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~~~~~~ 89 (482)
T PLN03007 10 FFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCENVDFIT 89 (482)
T ss_pred EECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcccccccc
Confidence 57999999999999999999999999999998776655543322 2222221111000111100000
Q ss_pred ---h-HHHHHHHHHHHHHhhccCCCccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCC-------CCCCC
Q 013835 67 ---V-QRNQMKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPT-------SEFPH 135 (435)
Q Consensus 67 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~-------~~~p~ 135 (435)
. ....+...+......+.+.+.+.++..+||+||+|.+..|+..+|+.+|||.+++++++.... ...|.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~ 169 (482)
T PLN03007 90 SNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYCIRVHKPQ 169 (482)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHHHHhcccc
Confidence 0 000111111111122222223333445899999999999999999999999999987543210 00010
Q ss_pred CC-----cccCCCccc---hHHHHHHHHH-HHHHHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCCC-----C
Q 013835 136 PL-----SRVKQPAGY---RLSYQIVDSL-IWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPH-----L 201 (435)
Q Consensus 136 ~~-----~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 201 (435)
.. ..+..+... .......... -...+...+...... .. .......++.. .
T Consensus 170 ~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------~~~~vl~Nt~~~le~~~ 233 (482)
T PLN03007 170 KKVASSSEPFVIPDLPGDIVITEEQINDADEESPMGKFMKEVRES---EV-------------KSFGVLVNSFYELESAY 233 (482)
T ss_pred cccCCCCceeeCCCCCCccccCHHhcCCCCCchhHHHHHHHHHhh---cc-------------cCCEEEEECHHHHHHHH
Confidence 00 000000000 0000000000 000011111111110 00 00112223211 1
Q ss_pred cCCCC-CCCCCCeeeecccccCCC----------CCCCchHHHHHHHcCC--CcEEEeeCCCCCCChHHHHHHHHHHHHH
Q 013835 202 VPKPK-DWGPKVDVVGFCFLDLAS----------NYEPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQ 268 (435)
Q Consensus 202 ~~~~~-~~~~~~~~vG~~~~~~~~----------~~~~~~~l~~~~~~~~--~~v~v~~Gs~~~~~~~~~~~~~~~~~~~ 268 (435)
.+..+ .....+..+||+...... ....++++.+|++.++ ++|||++||......+++ ..+..+++.
T Consensus 234 ~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~-~~~~~~l~~ 312 (482)
T PLN03007 234 ADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQL-FEIAAGLEG 312 (482)
T ss_pred HHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHH-HHHHHHHHH
Confidence 11111 122457889997432110 1112467899999764 499999999976655655 557799999
Q ss_pred hCCeEEEEcCCCCC-----CCCCC------CCCceEEcCCCChhhhccc--ccEEEEeCCchHHHHHHHhCCCEEeecCC
Q 013835 269 TGQRGIINKGWGGL-----GNLAE------PKDSIYLLDNIPHDWLFLQ--CKAVVHHGGAGTTAAGLRAACPTTIVPFF 335 (435)
Q Consensus 269 ~~~~~iv~~~~~~~-----~~~~~------~~~~v~~~~~~p~~~~l~~--~~l~I~hgG~~s~~Eal~~G~P~l~~P~~ 335 (435)
.+.+|+|+.+.... ..+++ .+.|+++.+|+||.++|++ +++|||||||||++||+++|||||++|.+
T Consensus 313 ~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~ 392 (482)
T PLN03007 313 SGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVG 392 (482)
T ss_pred CCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccch
Confidence 99999998864311 12232 3568899999999999555 56799999999999999999999999999
Q ss_pred CChhhHHHHHH---HcCCCCCCC------CCCCCCHHHHHHHHHHhc-CH---HHHHHHHHHHHHhhcc----CcHHHHH
Q 013835 336 GDQPFWGERVH---ARGVGPPPI------PVDEFSLPKLINAINFML-DP---KVKERAVELAEAMEKE----DGVTGAV 398 (435)
Q Consensus 336 ~dQ~~na~~v~---~~g~G~~~l------~~~~~~~~~l~~~i~~ll-~~---~~~~~~~~~~~~~~~~----~~~~~~~ 398 (435)
+||+.||++++ +.|+|+ .. +.+.++.++|.++|++++ ++ ++|++++++++..++. +...+..
T Consensus 393 ~DQ~~na~~~~~~~~~G~~~-~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l 471 (482)
T PLN03007 393 AEQFYNEKLVTQVLRTGVSV-GAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFNDL 471 (482)
T ss_pred hhhhhhHHHHHHhhcceeEe-ccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999886 345553 21 335679999999999999 87 8999999999887753 3355666
Q ss_pred HHHHHhcc
Q 013835 399 KAFFKHYS 406 (435)
Q Consensus 399 ~~i~~~l~ 406 (435)
+.+.+.+.
T Consensus 472 ~~~v~~~~ 479 (482)
T PLN03007 472 NKFMEELN 479 (482)
T ss_pred HHHHHHHH
Confidence 66555443
No 15
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=5.2e-41 Score=317.37 Aligned_cols=381 Identities=19% Similarity=0.201 Sum_probs=233.6
Q ss_pred CcccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHh----c-C--ceeEEccccccCCCCCCCCCc---hh-hHH
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLT----A-G--LEFYPLDMVKNKGFLPSGPSE---IP-VQR 69 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~----~-g--~~~~~i~~~~~~~~~~~~~~~---~~-~~~ 69 (435)
++|++++||++|++.||+.|+.+|+.|||++.+.....+.. . + +.+++++.. .+. +.+... +. ...
T Consensus 10 l~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~--~gl-p~g~e~~~~~~~~~~ 86 (453)
T PLN02764 10 MYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHV--DGL-PVGTETVSEIPVTSA 86 (453)
T ss_pred EECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCc--CCC-CCcccccccCChhHH
Confidence 57999999999999999999999999999987654333321 1 2 445555521 111 111111 11 001
Q ss_pred HHHHHHHHHHHhhccCCCccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCC-------CCCCCCcccCC
Q 013835 70 NQMKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTS-------EFPHPLSRVKQ 142 (435)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~-------~~p~~~~~~~~ 142 (435)
..+.... ..+...+.+.++..+||+||+|+ ..|+..+|+.+|||.+.+++++..... .++.+...++.
T Consensus 87 ~~~~~a~----~~~~~~~~~~l~~~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~pglp~ 161 (453)
T PLN02764 87 DLLMSAM----DLTRDQVEVVVRAVEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLVPGGELGVPPPGYPS 161 (453)
T ss_pred HHHHHHH----HHhHHHHHHHHHhCCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhcccccCCCCCCCCCC
Confidence 1111111 11111112222333789999996 778899999999999999886543110 00000001110
Q ss_pred CccchHHHHHHHHHHH-------HHHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCCC-C----cCCCCC-CC
Q 013835 143 PAGYRLSYQIVDSLIW-------LGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPH-L----VPKPKD-WG 209 (435)
Q Consensus 143 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~-~~ 209 (435)
... .+.......... ......+.++.+. ..... ....++-. + +...+. ..
T Consensus 162 ~~v-~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~-------------~vlvNTf~eLE~~~~~~~~~~~~ 224 (453)
T PLN02764 162 SKV-LLRKQDAYTMKNLEPTNTIDVGPNLLERVTTS---LMNSD-------------VIAIRTAREIEGNFCDYIEKHCR 224 (453)
T ss_pred Ccc-cCcHhhCcchhhcCCCccchhHHHHHHHHHHh---hccCC-------------EEEEeccHHhhHHHHHHHHhhcC
Confidence 000 000000000000 0011112222110 11001 11112211 1 111111 12
Q ss_pred CCCeeeecccccCCCCCCCchHHHHHHHcCC--CcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCC-----C
Q 013835 210 PKVDVVGFCFLDLASNYEPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGG-----L 282 (435)
Q Consensus 210 ~~~~~vG~~~~~~~~~~~~~~~l~~~~~~~~--~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~-----~ 282 (435)
+++..|||+..........++++.+|+|+++ .+|||++||......+++.+ +..+|+..+.+++|+..... .
T Consensus 225 ~~v~~VGPL~~~~~~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~e-la~gL~~s~~pflwv~r~~~~~~~~~ 303 (453)
T PLN02764 225 KKVLLTGPVFPEPDKTRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQE-LCLGMELTGSPFLVAVKPPRGSSTIQ 303 (453)
T ss_pred CcEEEeccCccCccccccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHH-HHHHHHhCCCCeEEEEeCCCCCcchh
Confidence 4688899985422111123467999999865 39999999997766776655 77888888999999886321 0
Q ss_pred CCCCC------CCCceEEcCCCChhhh--cccccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHHHHH-HcCCCCC
Q 013835 283 GNLAE------PKDSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVH-ARGVGPP 353 (435)
Q Consensus 283 ~~~~~------~~~~v~~~~~~p~~~~--l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~-~~g~G~~ 353 (435)
..+++ ...++++.+|+||.++ ++++++|||||||||++||+++|||||++|.+.||+.||++++ ..|+|+
T Consensus 304 ~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv- 382 (453)
T PLN02764 304 EALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSV- 382 (453)
T ss_pred hhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEE-
Confidence 11211 1345567799999999 5668889999999999999999999999999999999999996 579997
Q ss_pred CCCCC---CCCHHHHHHHHHHhc-CH-----HHHHHHHHHHHHhhccCcHHHHHHHHHHhcccc
Q 013835 354 PIPVD---EFSLPKLINAINFML-DP-----KVKERAVELAEAMEKEDGVTGAVKAFFKHYSRS 408 (435)
Q Consensus 354 ~l~~~---~~~~~~l~~~i~~ll-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 408 (435)
.+..+ .++.++|++++++++ ++ ++|++++++++.+.+.++..+.++.+.+.+.+.
T Consensus 383 ~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~~GSS~~~l~~lv~~~~~~ 446 (453)
T PLN02764 383 EVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASPGLLTGYVDNFIESLQDL 446 (453)
T ss_pred EeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 66432 479999999999999 64 399999999999988877777777766666543
No 16
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=9.5e-41 Score=319.30 Aligned_cols=388 Identities=18% Similarity=0.214 Sum_probs=232.5
Q ss_pred CcccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHh-----------cCceeEEccccccCCCCCC--CCCchhh
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLT-----------AGLEFYPLDMVKNKGFLPS--GPSEIPV 67 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~-----------~g~~~~~i~~~~~~~~~~~--~~~~~~~ 67 (435)
|+|||++||++||+.||+.|+.+|..|||++++.....+.. .+..++.++...+ +.... ...++..
T Consensus 12 ~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pd-glp~~~~~~~~~~~ 90 (480)
T PLN02555 12 LVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFED-GWAEDDPRRQDLDL 90 (480)
T ss_pred EECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCC-CCCCCcccccCHHH
Confidence 57999999999999999999999999999987754333221 1122233321001 11110 0111211
Q ss_pred HHHHHHHHHHHHHhhccCCCccCCcccCc-CEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCC-------C-CCCCC-
Q 013835 68 QRNQMKEIIYSLLPACRDPDLDSGIAFKA-DAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTS-------E-FPHPL- 137 (435)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-DlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~-------~-~p~~~- 137 (435)
....+.......+....+.+. ...+| ++||+|.+..|+..+|+++|||.+++++++..... . .+...
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~---~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~~~~~~~~~ 167 (480)
T PLN02555 91 YLPQLELVGKREIPNLVKRYA---EQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYHGLVPFPTE 167 (480)
T ss_pred HHHHHHHhhhHHHHHHHHHHh---ccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhhcCCCcccc
Confidence 111111111111111111110 01144 99999999999999999999999999876543211 0 01000
Q ss_pred ----cccCCCccchHHHHHHHHHHHH--HHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCCC-C----cCCCC
Q 013835 138 ----SRVKQPAGYRLSYQIVDSLIWL--GIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPH-L----VPKPK 206 (435)
Q Consensus 138 ----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~ 206 (435)
..+..|....+....+...+.. .....++.+.+......... ....|+-. + +...+
T Consensus 168 ~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~-------------~vlvNTf~eLE~~~~~~l~ 234 (480)
T PLN02555 168 TEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPF-------------CILIDTFQELEKEIIDYMS 234 (480)
T ss_pred cCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCC-------------EEEEEchHHHhHHHHHHHh
Confidence 0000010011111111110000 00001111111000000000 11112211 1 11111
Q ss_pred CCCCCCeeeecccccCC---C-----CCCCchHHHHHHHcCC--CcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEE
Q 013835 207 DWGPKVDVVGFCFLDLA---S-----NYEPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIIN 276 (435)
Q Consensus 207 ~~~~~~~~vG~~~~~~~---~-----~~~~~~~l~~~~~~~~--~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~ 276 (435)
...+ +..+||+..... . .+..++++.+|+++++ .+|||++||+.....++ +..++.+++..+++|||+
T Consensus 235 ~~~~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q-~~ela~~l~~~~~~flW~ 312 (480)
T PLN02555 235 KLCP-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQ-IDEIAYGVLNSGVSFLWV 312 (480)
T ss_pred hCCC-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHH-HHHHHHHHHhcCCeEEEE
Confidence 1123 677899853211 0 0233567999999865 39999999987665554 566889999999999998
Q ss_pred cCCCC----C--CCCC-----CCCCceEEcCCCChhhh--cccccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHH
Q 013835 277 KGWGG----L--GNLA-----EPKDSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGE 343 (435)
Q Consensus 277 ~~~~~----~--~~~~-----~~~~~v~~~~~~p~~~~--l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~ 343 (435)
.+... . ..++ ..++|+.+++|+||.++ |+++++|||||||||++||+++|||||++|.++||+.||+
T Consensus 313 ~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~ 392 (480)
T PLN02555 313 MRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAV 392 (480)
T ss_pred EecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHH
Confidence 75311 0 1121 24578999999999999 5899999999999999999999999999999999999999
Q ss_pred HHHHc-CCCCCCCC-----CCCCCHHHHHHHHHHhc-C---HHHHHHHHHHHHHhhcc----CcHHHHHHHHHHhcccc
Q 013835 344 RVHAR-GVGPPPIP-----VDEFSLPKLINAINFML-D---PKVKERAVELAEAMEKE----DGVTGAVKAFFKHYSRS 408 (435)
Q Consensus 344 ~v~~~-g~G~~~l~-----~~~~~~~~l~~~i~~ll-~---~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~l~~~ 408 (435)
++++. |+|+ .+. ...++.++|.++|++++ + +++|++++++++..++. +...+.++.+.+.+...
T Consensus 393 ~~~~~~gvGv-~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 393 YLVDVFKTGV-RLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred HHHHHhCceE-EccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 99887 9998 773 33578999999999999 5 57999999999886642 44667777766666544
No 17
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=3.6e-40 Score=313.92 Aligned_cols=385 Identities=14% Similarity=0.181 Sum_probs=238.4
Q ss_pred CcccCCccchhHHHHHHHHHHHCC--CeEEEEeCCCcH-----HHHH-----hcCceeEEccccccCCCCCCCCCchhhH
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQDYG--HRVRLATHSNFK-----DFVL-----TAGLEFYPLDMVKNKGFLPSGPSEIPVQ 68 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rG--h~V~~~~~~~~~-----~~~~-----~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 68 (435)
|+|++++||++|++.||+.|+.+| ..|||++..... ..+. ..++.|+.++...... ......+....
T Consensus 8 ~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~-~~~~~~~~~~~ 86 (468)
T PLN02207 8 FIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKP-TLGGTQSVEAY 86 (468)
T ss_pred EeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCC-ccccccCHHHH
Confidence 589999999999999999999998 999999755321 1222 1258888887211100 00011112111
Q ss_pred H-HHHHHH---HHHHHhhccCCCccCCcccCc-CEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCC---CCC-----C
Q 013835 69 R-NQMKEI---IYSLLPACRDPDLDSGIAFKA-DAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTS---EFP-----H 135 (435)
Q Consensus 69 ~-~~~~~~---~~~~~~~~~~~~~~~~~~~~p-DlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~---~~p-----~ 135 (435)
. ..+... +...+....+.. ..+.+| ++||+|.+..|+..+|+++|||.+.+++++..... .+| .
T Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~---~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~~~~ 163 (468)
T PLN02207 87 VYDVIEKNIPLVRNIVMDILSSL---ALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRHSKD 163 (468)
T ss_pred HHHHHHhcchhHHHHHHHHHHHh---ccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhccccc
Confidence 1 111110 011111111110 011134 89999999999999999999999999887643110 000 0
Q ss_pred --C---Cc--ccCCCcc-chHHHHHHHHHHHHHHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCCCCcCCC--
Q 013835 136 --P---LS--RVKQPAG-YRLSYQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKP-- 205 (435)
Q Consensus 136 --~---~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 205 (435)
. .. .+..|.. ..+....+...... ......+.+..... ........++...++.+
T Consensus 164 ~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~--~~~~~~~~~~~~~~-------------~~~~~vlvNtf~~LE~~~~ 228 (468)
T PLN02207 164 TSVFVRNSEEMLSIPGFVNPVPANVLPSALFV--EDGYDAYVKLAILF-------------TKANGILVNSSFDIEPYSV 228 (468)
T ss_pred cccCcCCCCCeEECCCCCCCCChHHCcchhcC--CccHHHHHHHHHhc-------------ccCCEEEEEchHHHhHHHH
Confidence 0 00 0001110 11111111111100 00011111100000 11223444554444433
Q ss_pred -----CCCCCCCeeeecccccCCC--C---CCCchHHHHHHHcCC--CcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeE
Q 013835 206 -----KDWGPKVDVVGFCFLDLAS--N---YEPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRG 273 (435)
Q Consensus 206 -----~~~~~~~~~vG~~~~~~~~--~---~~~~~~l~~~~~~~~--~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~ 273 (435)
++..+++..+||+...... + ...++++.+|+++++ .+|||++||..... .+.++.++.+++..+++|
T Consensus 229 ~~~~~~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~-~~q~~ela~~l~~~~~~f 307 (468)
T PLN02207 229 NHFLDEQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLR-GPLVKEIAHGLELCQYRF 307 (468)
T ss_pred HHHHhccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCC-HHHHHHHHHHHHHCCCcE
Confidence 3345789999999643211 0 012257999999864 49999999987554 445677999999999999
Q ss_pred EEEcCCCCC---CCCC-----CCCCceEEcCCCChhhh--cccccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHH
Q 013835 274 IINKGWGGL---GNLA-----EPKDSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGE 343 (435)
Q Consensus 274 iv~~~~~~~---~~~~-----~~~~~v~~~~~~p~~~~--l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~ 343 (435)
||+.+.... +.++ ..++|+.+++|+||.++ |+++++|||||||||++||+++|||||++|.++||+.||+
T Consensus 308 lW~~r~~~~~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~ 387 (468)
T PLN02207 308 LWSLRTEEVTNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAF 387 (468)
T ss_pred EEEEeCCCccccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHH
Confidence 999864221 1122 14678899999999999 6778889999999999999999999999999999999999
Q ss_pred HHHH-cCCCCCCCC------CC-CCCHHHHHHHHHHhc-C--HHHHHHHHHHHHHhhc---cC-cHHHHHHHHHHhcc
Q 013835 344 RVHA-RGVGPPPIP------VD-EFSLPKLINAINFML-D--PKVKERAVELAEAMEK---ED-GVTGAVKAFFKHYS 406 (435)
Q Consensus 344 ~v~~-~g~G~~~l~------~~-~~~~~~l~~~i~~ll-~--~~~~~~~~~~~~~~~~---~~-~~~~~~~~i~~~l~ 406 (435)
++++ .|+|+ .+. .+ ..+.++|+++|++++ + ++||++++++++.+++ .+ +..+.++.+.+.+.
T Consensus 388 ~~~~~~gvGv-~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~ 464 (468)
T PLN02207 388 LMVKELKLAV-ELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVI 464 (468)
T ss_pred HHHHHhCceE-EEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 8776 79996 442 12 348899999999999 3 7999999999999874 33 45566666555443
No 18
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=4.5e-40 Score=313.81 Aligned_cols=368 Identities=14% Similarity=0.138 Sum_probs=225.3
Q ss_pred CcccCCccchhHHHHHHHHHH-HCCCeEEEEeCCCcHHHHH-----hcCceeEEccccccCCCCCCCCCchhhHHHHHHH
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQ-DYGHRVRLATHSNFKDFVL-----TAGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKE 74 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~-~rGh~V~~~~~~~~~~~~~-----~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (435)
++|+|++||++|++.||+.|+ .+|+.|||++++.....+. ..++.++.++.....+..+.+.............
T Consensus 10 l~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~~~~~~~~~~~~~~ 89 (481)
T PLN02992 10 MFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPSAHVVTKIGVIMRE 89 (481)
T ss_pred EeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCCccHHHHHHHHHHH
Confidence 579999999999999999998 7899999998775433321 2368888887432212111111111111111110
Q ss_pred HHHHHHhhccCCCccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCC---CCCC-----CCC------ccc
Q 013835 75 IIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPT---SEFP-----HPL------SRV 140 (435)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~---~~~p-----~~~------~~~ 140 (435)
. ...+......+ ..+|++||+|.+..|+..+|+.+|||.+.+++++.... ..+| ... ..+
T Consensus 90 ~-~~~~~~~l~~~-----~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (481)
T PLN02992 90 A-VPTLRSKIAEM-----HQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEHTVQRKPL 163 (481)
T ss_pred h-HHHHHHHHHhc-----CCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccccccCCCCc
Confidence 0 11111111111 12689999999999999999999999999987654321 0011 000 000
Q ss_pred CCCccchHHHHHHHHHHHHHHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCC-CC----cCCC-------CCC
Q 013835 141 KQPAGYRLSYQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSP-HL----VPKP-------KDW 208 (435)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~-------~~~ 208 (435)
..|....+........+...-......+.+......... ....|+- ++ +... ...
T Consensus 164 ~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~-------------gvlvNTf~eLE~~~l~~l~~~~~~~~~~ 230 (481)
T PLN02992 164 AMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKAD-------------GILVNTWEEMEPKSLKSLQDPKLLGRVA 230 (481)
T ss_pred ccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCC-------------EEEEechHHHhHHHHHHHhhcccccccc
Confidence 011111111111111000000000111111000001000 1111211 11 0000 001
Q ss_pred CCCCeeeecccccCCCCCCCchHHHHHHHcCC--CcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCC----
Q 013835 209 GPKVDVVGFCFLDLASNYEPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGL---- 282 (435)
Q Consensus 209 ~~~~~~vG~~~~~~~~~~~~~~~l~~~~~~~~--~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~---- 282 (435)
.+.+..+||+...... ...++++.+|+++++ .+|||++||......+ .++.+..+|+..+++|||+......
T Consensus 231 ~~~v~~VGPl~~~~~~-~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~-q~~ela~gL~~s~~~flW~~r~~~~~~~~ 308 (481)
T PLN02992 231 RVPVYPIGPLCRPIQS-SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAK-QLTELAWGLEMSQQRFVWVVRPPVDGSAC 308 (481)
T ss_pred CCceEEecCccCCcCC-CcchHHHHHHHHcCCCCceEEEeecccccCCHH-HHHHHHHHHHHcCCCEEEEEeCCcccccc
Confidence 2457789998643211 123456999999864 4999999999666555 4577999999999999999853210
Q ss_pred ------------CCCC-CCCC---------ceEEcCCCChhhh--cccccEEEEeCCchHHHHHHHhCCCEEeecCCCCh
Q 013835 283 ------------GNLA-EPKD---------SIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQ 338 (435)
Q Consensus 283 ------------~~~~-~~~~---------~v~~~~~~p~~~~--l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ 338 (435)
+... .+|+ ++++.+|+||.++ ++++.+|||||||||++||+++|||||++|.++||
T Consensus 309 ~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ 388 (481)
T PLN02992 309 SAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQ 388 (481)
T ss_pred cccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchh
Confidence 1011 2444 5888999999999 55666899999999999999999999999999999
Q ss_pred hhHHHHH-HHcCCCCCCCCC--CCCCHHHHHHHHHHhc-C---HHHHHHHHHHHHHhhc
Q 013835 339 PFWGERV-HARGVGPPPIPV--DEFSLPKLINAINFML-D---PKVKERAVELAEAMEK 390 (435)
Q Consensus 339 ~~na~~v-~~~g~G~~~l~~--~~~~~~~l~~~i~~ll-~---~~~~~~~~~~~~~~~~ 390 (435)
+.||+++ ++.|+|+ .++. ..++.++|.++|++++ + +++++++++++++.++
T Consensus 389 ~~na~~~~~~~g~gv-~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~ 446 (481)
T PLN02992 389 NMNAALLSDELGIAV-RSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEM 446 (481)
T ss_pred HHHHHHHHHHhCeeE-EecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 9999999 5889998 7765 3489999999999999 6 4789999988887653
No 19
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.9e-40 Score=313.40 Aligned_cols=371 Identities=15% Similarity=0.190 Sum_probs=225.1
Q ss_pred CcccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHH---hcCceeEEccccccCCCCCCC---CCchhhHHHH---
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVL---TAGLEFYPLDMVKNKGFLPSG---PSEIPVQRNQ--- 71 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~---~~g~~~~~i~~~~~~~~~~~~---~~~~~~~~~~--- 71 (435)
++|+|++||++||+.||+.|+.+|+.|||++++.....+. ..++.++.++. +....+ ...+......
T Consensus 10 ~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ipd----glp~~~~~~~~~~~~~~~~~~~ 85 (449)
T PLN02173 10 AVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATISD----GYDQGGFSSAGSVPEYLQNFKT 85 (449)
T ss_pred EecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEcCC----CCCCcccccccCHHHHHHHHHH
Confidence 5899999999999999999999999999998765333322 13588888862 111101 1111111111
Q ss_pred -HHHHHHHHHhhccCCCccCCcccCc-CEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCC----------CCCCCCcc
Q 013835 72 -MKEIIYSLLPACRDPDLDSGIAFKA-DAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTS----------EFPHPLSR 139 (435)
Q Consensus 72 -~~~~~~~~~~~~~~~~~~~~~~~~p-DlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~----------~~p~~~~~ 139 (435)
....++.++.... ...+| ++||+|.+..|+..+|+.+|||.+.+++++..... ..+.+...
T Consensus 86 ~~~~~~~~~l~~~~-------~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~~~~~~~~~pg 158 (449)
T PLN02173 86 FGSKTVADIIRKHQ-------STDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYINNGSLTLPIKD 158 (449)
T ss_pred hhhHHHHHHHHHhh-------ccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhccCCccCCCCC
Confidence 1111122221110 11256 99999999999999999999999999885432100 00000000
Q ss_pred cCCCccchHHHHHHHHHHHH--HHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCC-CCc----CCCCCCCCCC
Q 013835 140 VKQPAGYRLSYQIVDSLIWL--GIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSP-HLV----PKPKDWGPKV 212 (435)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~ 212 (435)
++ .+....+...+.. ......+.+.+........+ ....++- ++. ...+.. +.+
T Consensus 159 ~p-----~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~vlvNTf~eLE~~~~~~~~~~-~~v 219 (449)
T PLN02173 159 LP-----LLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKAD-------------FVLVNSFHDLDLHENELLSKV-CPV 219 (449)
T ss_pred CC-----CCChhhCChhhcCCCCchHHHHHHHHHHhhhccCC-------------EEEEeCHHHhhHHHHHHHHhc-CCe
Confidence 10 0000000000000 00000111111000011001 1111211 110 011111 246
Q ss_pred eeeecccccC-------C-CC-----C--CCchHHHHHHHcCC--CcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEE
Q 013835 213 DVVGFCFLDL-------A-SN-----Y--EPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGII 275 (435)
Q Consensus 213 ~~vG~~~~~~-------~-~~-----~--~~~~~l~~~~~~~~--~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv 275 (435)
..+||+.... . .. + ..++.+.+|++.++ .+||||+||......+ .+..+..++ .+.+|+|
T Consensus 220 ~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~-~~~ela~gL--s~~~flW 296 (449)
T PLN02173 220 LTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSE-QMEEIASAI--SNFSYLW 296 (449)
T ss_pred eEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHH-HHHHHHHHh--cCCCEEE
Confidence 6788885210 0 00 0 12345899999765 3999999998765555 456688888 5677898
Q ss_pred EcCCCCCCCCC-----CC-CCceEEcCCCChhhh--cccccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHH
Q 013835 276 NKGWGGLGNLA-----EP-KDSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHA 347 (435)
Q Consensus 276 ~~~~~~~~~~~-----~~-~~~v~~~~~~p~~~~--l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~ 347 (435)
+......+.++ .. ++|+++++|+||.++ |+++.+|||||||||++||+++|||||++|.+.||..||+++++
T Consensus 297 vvr~~~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~ 376 (449)
T PLN02173 297 VVRASEESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQD 376 (449)
T ss_pred EEeccchhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHH
Confidence 88532212222 12 678999999999999 55577999999999999999999999999999999999999997
Q ss_pred c-CCCCCCCCCCC----CCHHHHHHHHHHhc-C---HHHHHHHHHHHHHhhc----cCcHHHHHHHHHHhc
Q 013835 348 R-GVGPPPIPVDE----FSLPKLINAINFML-D---PKVKERAVELAEAMEK----EDGVTGAVKAFFKHY 405 (435)
Q Consensus 348 ~-g~G~~~l~~~~----~~~~~l~~~i~~ll-~---~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~l 405 (435)
. |+|+ .+..++ .+.++|++++++++ + .++|+++++++++.++ .+...+.++.+.+.+
T Consensus 377 ~~g~Gv-~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~ 446 (449)
T PLN02173 377 VWKVGV-RVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKI 446 (449)
T ss_pred HhCceE-EEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 6 8887 664322 48899999999999 6 5689999999888773 334556666665544
No 20
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.6e-40 Score=318.16 Aligned_cols=384 Identities=17% Similarity=0.216 Sum_probs=235.0
Q ss_pred CcccCCccchhHHHHHHHHHHHCC--CeEEEEeCCCcHH-H------HH------hcCceeEEccccccCCCCCCCCCch
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQDYG--HRVRLATHSNFKD-F------VL------TAGLEFYPLDMVKNKGFLPSGPSEI 65 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rG--h~V~~~~~~~~~~-~------~~------~~g~~~~~i~~~~~~~~~~~~~~~~ 65 (435)
++|++++||++|++.||+.|+.+| ..|||++++.... . +. ..+++++.++..... ......+
T Consensus 7 l~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~---~~~~~~~ 83 (481)
T PLN02554 7 FIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQP---TTEDPTF 83 (481)
T ss_pred EeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCC---cccchHH
Confidence 589999999999999999999998 8899997653211 1 11 125888888732210 0001111
Q ss_pred hhHHHHHHHHHHHHHhhccCCCccCCcccCc-CEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCC---C---------
Q 013835 66 PVQRNQMKEIIYSLLPACRDPDLDSGIAFKA-DAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTS---E--------- 132 (435)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-DlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~---~--------- 132 (435)
......+...+...+....+...+ ...+| ++||+|.+..|+..+|+++|||.+.+++++..... .
T Consensus 84 ~~~~~~~~~~~~~~l~~l~~~~~~--~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~~~~ 161 (481)
T PLN02554 84 QSYIDNQKPKVRDAVAKLVDDSST--PSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYDEKK 161 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc--CCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhccccc
Confidence 111112222222222222111000 01134 89999999999999999999999999886543110 0
Q ss_pred CC--CCC---cccCCCcc-chHHHHHHHHHHHHHHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCC-CCcC--
Q 013835 133 FP--HPL---SRVKQPAG-YRLSYQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSP-HLVP-- 203 (435)
Q Consensus 133 ~p--~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-- 203 (435)
++ ... ..+..|.. ..+....+...+.. ......+.+.......... ...++- ++..
T Consensus 162 ~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~--~~~~~~~~~~~~~~~~~~g-------------vlvNt~~eLe~~~ 226 (481)
T PLN02554 162 YDVSELEDSEVELDVPSLTRPYPVKCLPSVLLS--KEWLPLFLAQARRFREMKG-------------ILVNTVAELEPQA 226 (481)
T ss_pred cCccccCCCCceeECCCCCCCCCHHHCCCcccC--HHHHHHHHHHHHhcccCCE-------------EEEechHHHhHHH
Confidence 01 000 00001110 00110111000000 0001111110000110111 111111 0000
Q ss_pred -----CCCCCCCCCeeeeccc-ccCC-C--CCCCchHHHHHHHcCC--CcEEEeeCCCCCCChHHHHHHHHHHHHHhCCe
Q 013835 204 -----KPKDWGPKVDVVGFCF-LDLA-S--NYEPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQR 272 (435)
Q Consensus 204 -----~~~~~~~~~~~vG~~~-~~~~-~--~~~~~~~l~~~~~~~~--~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~ 272 (435)
......+++..+||+. .... . ....++++.+|+++++ .+|||++||......+ .++.++.+++..+++
T Consensus 227 ~~~l~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~-~~~~la~~l~~~~~~ 305 (481)
T PLN02554 227 LKFFSGSSGDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEE-QAREIAIALERSGHR 305 (481)
T ss_pred HHHHHhcccCCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHH-HHHHHHHHHHHcCCC
Confidence 0001335788999983 2221 1 1234567999999864 4999999998665555 567799999999999
Q ss_pred EEEEcCCCCC--------------CCCCC-----CCCceEEcCCCChhhh--cccccEEEEeCCchHHHHHHHhCCCEEe
Q 013835 273 GIINKGWGGL--------------GNLAE-----PKDSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTI 331 (435)
Q Consensus 273 ~iv~~~~~~~--------------~~~~~-----~~~~v~~~~~~p~~~~--l~~~~l~I~hgG~~s~~Eal~~G~P~l~ 331 (435)
|||+.++... +.+++ ..+|+.+++|+||.++ |+++++|||||||||++||+++|||||+
T Consensus 306 flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~ 385 (481)
T PLN02554 306 FLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAA 385 (481)
T ss_pred eEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEe
Confidence 9999864210 01121 3467888999999999 5999999999999999999999999999
Q ss_pred ecCCCChhhHH-HHHHHcCCCCCCCCC-----------CCCCHHHHHHHHHHhc--CHHHHHHHHHHHHHhhc---cCc-
Q 013835 332 VPFFGDQPFWG-ERVHARGVGPPPIPV-----------DEFSLPKLINAINFML--DPKVKERAVELAEAMEK---EDG- 393 (435)
Q Consensus 332 ~P~~~dQ~~na-~~v~~~g~G~~~l~~-----------~~~~~~~l~~~i~~ll--~~~~~~~~~~~~~~~~~---~~~- 393 (435)
+|.++||+.|| ..+++.|+|+ .++. ..++.++|.++|++++ |++||++++++++.+++ .+|
T Consensus 386 ~P~~~DQ~~Na~~~v~~~g~Gv-~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~gGs 464 (481)
T PLN02554 386 WPLYAEQKFNAFEMVEELGLAV-EIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDGGS 464 (481)
T ss_pred cCccccchhhHHHHHHHhCceE-EeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCh
Confidence 99999999999 5688999998 6642 3578999999999999 68999999999999885 333
Q ss_pred HHHHHHHHHHhcc
Q 013835 394 VTGAVKAFFKHYS 406 (435)
Q Consensus 394 ~~~~~~~i~~~l~ 406 (435)
..+.++.+.+.+.
T Consensus 465 s~~~l~~lv~~~~ 477 (481)
T PLN02554 465 SHTALKKFIQDVT 477 (481)
T ss_pred HHHHHHHHHHHHH
Confidence 4556665555443
No 21
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.2e-39 Score=309.37 Aligned_cols=368 Identities=14% Similarity=0.130 Sum_probs=219.9
Q ss_pred CcccCCccchhHHHHHHHHHHHCC--CeEEEE--eCCCcHHH----HHh-----cCceeEEccccccCCCCCCCCCchhh
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQDYG--HRVRLA--THSNFKDF----VLT-----AGLEFYPLDMVKNKGFLPSGPSEIPV 67 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rG--h~V~~~--~~~~~~~~----~~~-----~g~~~~~i~~~~~~~~~~~~~~~~~~ 67 (435)
++|++++||++||+.||+.|+.+| +.||+. +....... +.. .+++++.++.................
T Consensus 8 l~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~ 87 (451)
T PLN03004 8 LYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTSRHHHES 87 (451)
T ss_pred EeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccccccCHHH
Confidence 579999999999999999999998 556664 33321111 111 25888888732110000001011111
Q ss_pred -H---HHHHHHHHHHHHhhccCCCccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCC---CCC------
Q 013835 68 -Q---RNQMKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTS---EFP------ 134 (435)
Q Consensus 68 -~---~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~---~~p------ 134 (435)
. .......+...+.... ..-.+++||+|++..|+..+|+++|||.+.+++++..... .+|
T Consensus 88 ~~~~~~~~~~~~~~~~l~~l~-------~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~ 160 (451)
T PLN03004 88 LLLEILCFSNPSVHRTLFSLS-------RNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETT 160 (451)
T ss_pred HHHHHHHhhhHHHHHHHHhcC-------CCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccccc
Confidence 1 1111122222222211 1113599999999999999999999999999886543210 000
Q ss_pred -CC--Cc--ccCCCccchHHHHHHHHHHHHHHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCC-CC----cCC
Q 013835 135 -HP--LS--RVKQPAGYRLSYQIVDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSP-HL----VPK 204 (435)
Q Consensus 135 -~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~ 204 (435)
.. .. .+..|....+....+...+...-....+.+.+....+..... +..++- ++ +..
T Consensus 161 ~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~-------------vl~NTf~eLE~~~l~~ 227 (451)
T PLN03004 161 PGKNLKDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSG-------------IIINTFDALENRAIKA 227 (451)
T ss_pred cccccccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCe-------------eeeeeHHHhHHHHHHH
Confidence 00 00 000111110111111111100000001111110000000001 111111 11 111
Q ss_pred CC-CC-CCCCeeeecccccCC-C--CCCCchHHHHHHHcCC--CcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEc
Q 013835 205 PK-DW-GPKVDVVGFCFLDLA-S--NYEPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINK 277 (435)
Q Consensus 205 ~~-~~-~~~~~~vG~~~~~~~-~--~~~~~~~l~~~~~~~~--~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~ 277 (435)
.+ .. .+++..+||+..... . ....+.++.+|+++++ .+|||++||......+ .++.+..+|+..+.+|+|+.
T Consensus 228 l~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~-q~~ela~gL~~s~~~FlW~~ 306 (451)
T PLN03004 228 ITEELCFRNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKE-QVIEIAVGLEKSGQRFLWVV 306 (451)
T ss_pred HHhcCCCCCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHH-HHHHHHHHHHHCCCCEEEEE
Confidence 11 11 246778999864221 1 0112345899999764 4999999999665555 55779999999999999998
Q ss_pred CCCCC-C----CCCC-CC---------CceEEcCCCChhhhccc--ccEEEEeCCchHHHHHHHhCCCEEeecCCCChhh
Q 013835 278 GWGGL-G----NLAE-PK---------DSIYLLDNIPHDWLFLQ--CKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPF 340 (435)
Q Consensus 278 ~~~~~-~----~~~~-~~---------~~v~~~~~~p~~~~l~~--~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~ 340 (435)
..... + ...+ +| .|+++.+|+||.++|++ +.+|||||||||++||+++|||+|++|.+.||..
T Consensus 307 r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~ 386 (451)
T PLN03004 307 RNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRF 386 (451)
T ss_pred cCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchh
Confidence 64210 0 1112 33 68999999999999554 4559999999999999999999999999999999
Q ss_pred HHHHHHH-cCCCCCCCCCC---CCCHHHHHHHHHHhc-CHHHHHHHHHHHHHhhc
Q 013835 341 WGERVHA-RGVGPPPIPVD---EFSLPKLINAINFML-DPKVKERAVELAEAMEK 390 (435)
Q Consensus 341 na~~v~~-~g~G~~~l~~~---~~~~~~l~~~i~~ll-~~~~~~~~~~~~~~~~~ 390 (435)
||+++++ .|+|+ .++.. ..+.++|+++|++++ |++||++++++++....
T Consensus 387 na~~~~~~~g~g~-~l~~~~~~~~~~e~l~~av~~vm~~~~~r~~a~~~~~~a~~ 440 (451)
T PLN03004 387 NRVMIVDEIKIAI-SMNESETGFVSSTEVEKRVQEIIGECPVRERTMAMKNAAEL 440 (451)
T ss_pred hHHHHHHHhCceE-EecCCcCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 9999975 69998 77643 469999999999999 99999999998887654
No 22
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=3.5e-39 Score=306.56 Aligned_cols=376 Identities=15% Similarity=0.181 Sum_probs=222.6
Q ss_pred CcccCCccchhHHHHHHHHHHH-CCCeEEEEeCCC-cHHH-HHh----cCceeEEccccccCCCCCC--C-CCchhhHHH
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQD-YGHRVRLATHSN-FKDF-VLT----AGLEFYPLDMVKNKGFLPS--G-PSEIPVQRN 70 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~-rGh~V~~~~~~~-~~~~-~~~----~g~~~~~i~~~~~~~~~~~--~-~~~~~~~~~ 70 (435)
++|+|++||++|++.||+.|+. +|+.|||++... .... ... .++.|+.++. +.... . .........
T Consensus 8 ~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~d----glp~g~~~~~~~~~~~~~ 83 (455)
T PLN02152 8 LVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSD----GFDDGVISNTDDVQNRLV 83 (455)
T ss_pred EecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCC----CCCCccccccccHHHHHH
Confidence 5799999999999999999996 699999998763 2222 221 1577877751 11111 0 111111111
Q ss_pred HHHHHHHHHHhhccCCCccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCC---CCCC-CCcccCCCccc
Q 013835 71 QMKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTS---EFPH-PLSRVKQPAGY 146 (435)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~---~~p~-~~~~~~~~~~~ 146 (435)
.........+....+.+.. ..-++++||+|.+..|+..+|+.+|||.+.+++++..... .++. .......|...
T Consensus 84 ~~~~~~~~~l~~~l~~l~~--~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~~~~~iPglp 161 (455)
T PLN02152 84 NFERNGDKALSDFIEANLN--GDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGNNSVFEFPNLP 161 (455)
T ss_pred HHHHhccHHHHHHHHHhhc--cCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccCCCeeecCCCC
Confidence 1111111111111111100 0113599999999999999999999999999887653211 0000 00000000000
Q ss_pred hHHHHHHHHHH---------HHHHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCC-CC----cCCCCCCCCCC
Q 013835 147 RLSYQIVDSLI---------WLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSP-HL----VPKPKDWGPKV 212 (435)
Q Consensus 147 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~ 212 (435)
.+....+...+ ...+......+... . . ..+..++- ++ +...+. ..+
T Consensus 162 ~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---------~--~~vlvNTf~eLE~~~~~~l~~--~~v 221 (455)
T PLN02152 162 SLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEE-------S---------N--PKILVNTFDSLEPEFLTAIPN--IEM 221 (455)
T ss_pred CCchHHCchhhcCCCCchhHHHHHHHHHHHhhhc-------c---------C--CEEEEeChHHhhHHHHHhhhc--CCE
Confidence 00000110000 01111111111110 0 0 01111211 11 111111 146
Q ss_pred eeeecccccC----CC--C----CCCchHHHHHHHcCC--CcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCC
Q 013835 213 DVVGFCFLDL----AS--N----YEPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWG 280 (435)
Q Consensus 213 ~~vG~~~~~~----~~--~----~~~~~~l~~~~~~~~--~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~ 280 (435)
..+||+.... .. . ++.+.++.+|+++++ .+|||++||......+ .++.+..+|+..+.+|+|+.+..
T Consensus 222 ~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~-q~~ela~gL~~s~~~flWv~r~~ 300 (455)
T PLN02152 222 VAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKK-QIEELARALIEGKRPFLWVITDK 300 (455)
T ss_pred EEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHH-HHHHHHHHHHHcCCCeEEEEecC
Confidence 6789885321 00 0 122346999999864 5999999999765444 56779999999999999987642
Q ss_pred C--------CC--CC---C----CCCCceEEcCCCChhhh--cccccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhH
Q 013835 281 G--------LG--NL---A----EPKDSIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFW 341 (435)
Q Consensus 281 ~--------~~--~~---~----~~~~~v~~~~~~p~~~~--l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~n 341 (435)
. .+ .+ . ..++|..+.+|+||.++ ++++.+|||||||||++||+++|||+|++|.++||..|
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~n 380 (455)
T PLN02152 301 LNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPAN 380 (455)
T ss_pred cccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHH
Confidence 1 00 00 1 14578899999999999 66677999999999999999999999999999999999
Q ss_pred HHHHHHc-CCCCC-CCCCC-CCCHHHHHHHHHHhc-CH--HHHHHHHHHHHHhhcc----CcHHHHHHHHHH
Q 013835 342 GERVHAR-GVGPP-PIPVD-EFSLPKLINAINFML-DP--KVKERAVELAEAMEKE----DGVTGAVKAFFK 403 (435)
Q Consensus 342 a~~v~~~-g~G~~-~l~~~-~~~~~~l~~~i~~ll-~~--~~~~~~~~~~~~~~~~----~~~~~~~~~i~~ 403 (435)
|+++++. |+|+. ..+.+ ..+.++|.++|++++ |+ ++|++++++++..++. +...+.++.+.+
T Consensus 381 a~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~ 452 (455)
T PLN02152 381 AKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVK 452 (455)
T ss_pred HHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 9999983 55541 23333 358999999999999 64 4899998877776653 334455555444
No 23
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=4.9e-39 Score=309.73 Aligned_cols=377 Identities=17% Similarity=0.210 Sum_probs=227.8
Q ss_pred CcccCCccchhHHHHHHHHHHHCC----CeEEEEeCCCc--------HHHHH---hc--CceeEEccccccCCCCCCCCC
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQDYG----HRVRLATHSNF--------KDFVL---TA--GLEFYPLDMVKNKGFLPSGPS 63 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rG----h~V~~~~~~~~--------~~~~~---~~--g~~~~~i~~~~~~~~~~~~~~ 63 (435)
|+||+++||++||+.||+.|+.+| +.|||++.+.. ...+. .. ++.++.++... .+.+..
T Consensus 8 lvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~----~p~~~e 83 (480)
T PLN00164 8 LLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE----PPTDAA 83 (480)
T ss_pred EeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC----CCCccc
Confidence 589999999999999999999987 78999975431 11111 11 47888887321 111111
Q ss_pred chhhHHHHHHHHHHHHHhhccCCCccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCC---CCCC-----
Q 013835 64 EIPVQRNQMKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTS---EFPH----- 135 (435)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~---~~p~----- 135 (435)
........+.......+....+.+ . -.+++||+|.+..|+..+|+.+|||.+.+++++..... .+|.
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~L~~l---~--~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~ 158 (480)
T PLN00164 84 GVEEFISRYIQLHAPHVRAAIAGL---S--CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALDEEV 158 (480)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHhc---C--CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhcccc
Confidence 221111111111111111111111 1 14699999999999999999999999999886543210 0100
Q ss_pred --CCcc----cCCCccchHHHHHHHHHH-------HHHHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCC-CC
Q 013835 136 --PLSR----VKQPAGYRLSYQIVDSLI-------WLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSP-HL 201 (435)
Q Consensus 136 --~~~~----~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~ 201 (435)
.... +..|....+....+.... ...+....++..+ ... ...++- ++
T Consensus 159 ~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~-------~~~-------------vlvNTf~eL 218 (480)
T PLN00164 159 AVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFME-------AAG-------------IIVNTAAEL 218 (480)
T ss_pred cCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhh-------cCE-------------EEEechHHh
Confidence 0000 000100000011110000 0000011111110 000 111110 00
Q ss_pred ----cCCCCC-------CCCCCeeeecccccC--CCCCCCchHHHHHHHcCC--CcEEEeeCCCCCCChHHHHHHHHHHH
Q 013835 202 ----VPKPKD-------WGPKVDVVGFCFLDL--ASNYEPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAF 266 (435)
Q Consensus 202 ----~~~~~~-------~~~~~~~vG~~~~~~--~~~~~~~~~l~~~~~~~~--~~v~v~~Gs~~~~~~~~~~~~~~~~~ 266 (435)
+...+. -.+.+..+||+.... ......++++.+|+++++ .+|||++||......++ ++.++.++
T Consensus 219 E~~~~~~~~~~~~~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q-~~ela~gL 297 (480)
T PLN00164 219 EPGVLAAIADGRCTPGRPAPTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQ-VREIAAGL 297 (480)
T ss_pred hHHHHHHHHhccccccCCCCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHH-HHHHHHHH
Confidence 000000 024678899986321 111234567999999864 48999999986666665 67799999
Q ss_pred HHhCCeEEEEcCCCCC--------CCCC-CCCCc---------eEEcCCCChhhhc--ccccEEEEeCCchHHHHHHHhC
Q 013835 267 EQTGQRGIINKGWGGL--------GNLA-EPKDS---------IYLLDNIPHDWLF--LQCKAVVHHGGAGTTAAGLRAA 326 (435)
Q Consensus 267 ~~~~~~~iv~~~~~~~--------~~~~-~~~~~---------v~~~~~~p~~~~l--~~~~l~I~hgG~~s~~Eal~~G 326 (435)
+..+.+|+|+...... .... .+|++ +++.+|+||.++| +++.+|||||||||++||+++|
T Consensus 298 ~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~G 377 (480)
T PLN00164 298 ERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHG 377 (480)
T ss_pred HHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcC
Confidence 9999999999763211 0111 13433 6777999999995 5566999999999999999999
Q ss_pred CCEEeecCCCChhhHHHHHH-HcCCCCCCCCCC-----CCCHHHHHHHHHHhc-CH-----HHHHHHHHHHHHhhcc---
Q 013835 327 CPTTIVPFFGDQPFWGERVH-ARGVGPPPIPVD-----EFSLPKLINAINFML-DP-----KVKERAVELAEAMEKE--- 391 (435)
Q Consensus 327 ~P~l~~P~~~dQ~~na~~v~-~~g~G~~~l~~~-----~~~~~~l~~~i~~ll-~~-----~~~~~~~~~~~~~~~~--- 391 (435)
||||++|.++||+.||+++. +.|+|+ .+..+ ..+.++|+++|++++ ++ ++|++++++++...+.
T Consensus 378 VP~l~~P~~~DQ~~Na~~~~~~~gvG~-~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~ 456 (480)
T PLN00164 378 VPMAPWPLYAEQHLNAFELVADMGVAV-AMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEE 456 (480)
T ss_pred CCEEeCCccccchhHHHHHHHHhCeEE-EeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999998774 579998 66422 258999999999999 63 3788888888877653
Q ss_pred C-cHHHHHHHHHHhcccc
Q 013835 392 D-GVTGAVKAFFKHYSRS 408 (435)
Q Consensus 392 ~-~~~~~~~~i~~~l~~~ 408 (435)
+ +..+.++.+.+.+...
T Consensus 457 gGSS~~~l~~~v~~~~~~ 474 (480)
T PLN00164 457 GGSSYAALQRLAREIRHG 474 (480)
T ss_pred CCcHHHHHHHHHHHHHhc
Confidence 3 4566666666655443
No 24
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=8.9e-38 Score=299.27 Aligned_cols=387 Identities=16% Similarity=0.173 Sum_probs=233.5
Q ss_pred CcccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHh---------cCceeEEcccccc-CCCCCCCC---Cchh-
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLT---------AGLEFYPLDMVKN-KGFLPSGP---SEIP- 66 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~---------~g~~~~~i~~~~~-~~~~~~~~---~~~~- 66 (435)
++|+|++||++|++.||+.|+.+|+.|||++++.....+.. .++.|+.++.+.. .+. +.+. .++.
T Consensus 13 ~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dgl-p~~~~~~~~~~~ 91 (491)
T PLN02534 13 LIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGL-PIGCENLDTLPS 91 (491)
T ss_pred EECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCC-CCCccccccCCc
Confidence 57999999999999999999999999999987654333221 1378888875432 121 1111 1111
Q ss_pred -hHHHHHHHHHHHHHhhccCCCccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCC-------CCCC---
Q 013835 67 -VQRNQMKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTS-------EFPH--- 135 (435)
Q Consensus 67 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~-------~~p~--- 135 (435)
.....+......+.....+.+.+. .-+|++||+|.+..|+..+|+.+|||.+++++++..... ..+.
T Consensus 92 ~~~~~~~~~~~~~l~~~l~~lL~~~--~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~ 169 (491)
T PLN02534 92 RDLLRKFYDAVDKLQQPLERFLEQA--KPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNAHLSV 169 (491)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhc--CCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhcccccC
Confidence 111111111111111111110110 126899999999999999999999999999875543211 0000
Q ss_pred CCc--ccCCCccc---hHHHHHHHHHH-H-HHHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCCCCcC-----
Q 013835 136 PLS--RVKQPAGY---RLSYQIVDSLI-W-LGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVP----- 203 (435)
Q Consensus 136 ~~~--~~~~~~~~---~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 203 (435)
... .+..|... .+....+...+ . .......+.+.. .. + ....+..|+-.-++
T Consensus 170 ~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~--~~-~-------------~a~~vlvNTf~eLE~~~l~ 233 (491)
T PLN02534 170 SSDSEPFVVPGMPQSIEITRAQLPGAFVSLPDLDDVRNKMRE--AE-S-------------TAFGVVVNSFNELEHGCAE 233 (491)
T ss_pred CCCCceeecCCCCccccccHHHCChhhcCcccHHHHHHHHHh--hc-c-------------cCCEEEEecHHHhhHHHHH
Confidence 000 00001100 01111111100 0 001111111111 00 0 00011222211111
Q ss_pred C-CCCCCCCCeeeecccccCC--------C-CCC-CchHHHHHHHcCC--CcEEEeeCCCCCCChHHHHHHHHHHHHHhC
Q 013835 204 K-PKDWGPKVDVVGFCFLDLA--------S-NYE-PPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQTG 270 (435)
Q Consensus 204 ~-~~~~~~~~~~vG~~~~~~~--------~-~~~-~~~~l~~~~~~~~--~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~ 270 (435)
. .....+++..+||+..... . ... ..+++.+|+++++ .+|||++||.....++++.+ +..+++..+
T Consensus 234 ~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e-~a~gl~~~~ 312 (491)
T PLN02534 234 AYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIE-LGLGLEASK 312 (491)
T ss_pred HHHhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHH-HHHHHHhCC
Confidence 0 1112356778999853111 0 011 2346899999864 59999999998777777655 669999999
Q ss_pred CeEEEEcCCCC-C---------CCCC-C-CCCceEEcCCCChhhhc--ccccEEEEeCCchHHHHHHHhCCCEEeecCCC
Q 013835 271 QRGIINKGWGG-L---------GNLA-E-PKDSIYLLDNIPHDWLF--LQCKAVVHHGGAGTTAAGLRAACPTTIVPFFG 336 (435)
Q Consensus 271 ~~~iv~~~~~~-~---------~~~~-~-~~~~v~~~~~~p~~~~l--~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~ 336 (435)
.+|+|+..... . +.+. . .+.++++.+|+||.+++ +++.+|||||||||++||+++|||||++|.++
T Consensus 313 ~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~ 392 (491)
T PLN02534 313 KPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFA 392 (491)
T ss_pred CCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccc
Confidence 99999986321 0 1111 1 25688888999999995 55666999999999999999999999999999
Q ss_pred ChhhHHHHHH-HcCCCCCCCCC---------C----CCCHHHHHHHHHHhc-C-----HHHHHHHHHHHHHhhcc----C
Q 013835 337 DQPFWGERVH-ARGVGPPPIPV---------D----EFSLPKLINAINFML-D-----PKVKERAVELAEAMEKE----D 392 (435)
Q Consensus 337 dQ~~na~~v~-~~g~G~~~l~~---------~----~~~~~~l~~~i~~ll-~-----~~~~~~~~~~~~~~~~~----~ 392 (435)
||+.||++++ ..|+|+ .+.. + ..+.++++++|++++ + .++|+|++++++..++. +
T Consensus 393 dq~~na~~~~e~~~vGv-~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GG 471 (491)
T PLN02534 393 EQFLNEKLIVEVLRIGV-RVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGG 471 (491)
T ss_pred cHHHHHHHHHHhhcceE-EecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999886 558887 4421 1 268999999999999 3 47999999998887652 3
Q ss_pred cHHHHHHHHHHhcccc
Q 013835 393 GVTGAVKAFFKHYSRS 408 (435)
Q Consensus 393 ~~~~~~~~i~~~l~~~ 408 (435)
+..+..+.+.+.+...
T Consensus 472 SS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 472 SSHINLSILIQDVLKQ 487 (491)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4566777766666543
No 25
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.3e-38 Score=307.50 Aligned_cols=386 Identities=15% Similarity=0.171 Sum_probs=226.5
Q ss_pred CcccCCccchhHHHHHHHHHHHCCC---eEEEEeCC-Cc----HHHHHh-----cCceeEEccccccCCCCC--C-CC-C
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQDYGH---RVRLATHS-NF----KDFVLT-----AGLEFYPLDMVKNKGFLP--S-GP-S 63 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh---~V~~~~~~-~~----~~~~~~-----~g~~~~~i~~~~~~~~~~--~-~~-~ 63 (435)
|+|||++||++||+.||+.|+.+|. .||+++.. .. ...+.. .++.|+.++......... . .. .
T Consensus 8 ~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~~~~~~~ 87 (475)
T PLN02167 8 FVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELFVKASEA 87 (475)
T ss_pred EeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCccccccccchHH
Confidence 5899999999999999999999984 45666422 11 112222 258888887322100000 0 00 0
Q ss_pred chhhHHHHHHHHHHHHHhhccCCCccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCC----------CC
Q 013835 64 EIPVQRNQMKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTS----------EF 133 (435)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~----------~~ 133 (435)
.+......+...+...+.......... ..-++++||+|.+..|+..+|+++|||.+.+++++..... ..
T Consensus 88 ~~~~~~~~~~~~l~~~l~~l~~~~~~~-~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~~~~~~ 166 (475)
T PLN02167 88 YILEFVKKMVPLVRDALSTLVSSRDES-DSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPERHRKT 166 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc-CCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHHhcccc
Confidence 011111111111222222211100000 0013599999999999999999999999999887642100 00
Q ss_pred C-CC-C----cccCCCcc-chHHHHHHHHHHHH--HHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCC-CC--
Q 013835 134 P-HP-L----SRVKQPAG-YRLSYQIVDSLIWL--GIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSP-HL-- 201 (435)
Q Consensus 134 p-~~-~----~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~-- 201 (435)
+ .. . ..+..|.. ..+....+....+. ......+.+.. ...... ...++- ++
T Consensus 167 ~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~~~~~~~~~~~~----~~~a~~-------------vlvNTf~eLE~ 229 (475)
T PLN02167 167 ASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKESYEAWVEIAER----FPEAKG-------------ILVNSFTELEP 229 (475)
T ss_pred ccccccCCCCCeeECCCCCCCCChhhCchhhhCcchHHHHHHHHHh----hcccCE-------------eeeccHHHHHH
Confidence 1 00 0 00000110 00111111100000 00000111110 000001 111110 11
Q ss_pred --cCCCCC---CCCCCeeeecccccCC----CC-CCCchHHHHHHHcCC--CcEEEeeCCCCCCChHHHHHHHHHHHHHh
Q 013835 202 --VPKPKD---WGPKVDVVGFCFLDLA----SN-YEPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQT 269 (435)
Q Consensus 202 --~~~~~~---~~~~~~~vG~~~~~~~----~~-~~~~~~l~~~~~~~~--~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~ 269 (435)
+...+. ..+++..+||+..... .. ....+++.+|++.++ ++|||++||+.....++ ++.++.+++..
T Consensus 230 ~~~~~l~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~-~~ela~~l~~~ 308 (475)
T PLN02167 230 NAFDYFSRLPENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQ-IKEIAQALELV 308 (475)
T ss_pred HHHHHHHhhcccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHH-HHHHHHHHHhC
Confidence 110000 1257889999864221 10 112257999999764 49999999986655555 56689999999
Q ss_pred CCeEEEEcCCCCCC---CCCCCCC--------ceEEcCCCChhhh--cccccEEEEeCCchHHHHHHHhCCCEEeecCCC
Q 013835 270 GQRGIINKGWGGLG---NLAEPKD--------SIYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFG 336 (435)
Q Consensus 270 ~~~~iv~~~~~~~~---~~~~~~~--------~v~~~~~~p~~~~--l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~ 336 (435)
+.+|||+.+..... ....+|+ +.++++|+||.++ |+++++|||||||||++||+++|||||++|.++
T Consensus 309 ~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~ 388 (475)
T PLN02167 309 GCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYA 388 (475)
T ss_pred CCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccc
Confidence 99999998642111 1112443 3478899999999 566889999999999999999999999999999
Q ss_pred ChhhHHHH-HHHcCCCCCCCCC-------CCCCHHHHHHHHHHhc-C-HHHHHHHHHHHHHhhcc----CcHHHHHHHHH
Q 013835 337 DQPFWGER-VHARGVGPPPIPV-------DEFSLPKLINAINFML-D-PKVKERAVELAEAMEKE----DGVTGAVKAFF 402 (435)
Q Consensus 337 dQ~~na~~-v~~~g~G~~~l~~-------~~~~~~~l~~~i~~ll-~-~~~~~~~~~~~~~~~~~----~~~~~~~~~i~ 402 (435)
||+.||++ +++.|+|+ .+.. ..++.++|+++|++++ + +++|+++++++++..+. ++..+.++.+.
T Consensus 389 DQ~~na~~~~~~~g~g~-~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v 467 (475)
T PLN02167 389 EQQLNAFTMVKELGLAV-ELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFI 467 (475)
T ss_pred cchhhHHHHHHHhCeeE-EeecccccccCCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99999976 77889997 6653 2468999999999999 5 48999999999887653 34556666655
Q ss_pred Hhcc
Q 013835 403 KHYS 406 (435)
Q Consensus 403 ~~l~ 406 (435)
+.+.
T Consensus 468 ~~i~ 471 (475)
T PLN02167 468 DDLL 471 (475)
T ss_pred HHHH
Confidence 5443
No 26
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.3e-37 Score=295.24 Aligned_cols=378 Identities=11% Similarity=0.120 Sum_probs=226.3
Q ss_pred CcccCCccchhHHHHHHHHHHHC-CCeEEEEeCCCcHHH------HHh----cCceeEEccccccCCCCCCCCCchhhHH
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQDY-GHRVRLATHSNFKDF------VLT----AGLEFYPLDMVKNKGFLPSGPSEIPVQR 69 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~r-Gh~V~~~~~~~~~~~------~~~----~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 69 (435)
++|+|++||++|++.||+.|+.+ |..|||++....... +.. .++.++.++.....+....+........
T Consensus 8 l~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~~~~~~~ 87 (470)
T PLN03015 8 LVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDATIFTKMV 87 (470)
T ss_pred EECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCccHHHHHH
Confidence 58999999999999999999977 999999965432211 111 1478888873322111011111111111
Q ss_pred HHHHHHHHHHHhhccCCCccCCcccCcCEEEeCCcchhHHHHHHHcCCC-EEEeeccCCCCC---CCC-------CCC--
Q 013835 70 NQMKEIIYSLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIP-IHIFFTMPWTPT---SEF-------PHP-- 136 (435)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP-~v~~~~~~~~~~---~~~-------p~~-- 136 (435)
..+.. ....+....+.+. .+|++||+|.+..|+..+|+++||| .+.+++++.... ..+ +..
T Consensus 88 ~~~~~-~~~~~~~~l~~l~-----~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~~~~~ 161 (470)
T PLN03015 88 VKMRA-MKPAVRDAVKSMK-----RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVEGEYV 161 (470)
T ss_pred HHHHh-chHHHHHHHHhcC-----CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcccccccC
Confidence 11111 1111111111111 1689999999999999999999999 466655332110 000 000
Q ss_pred --CcccCCCccchHHHHHHHHHH-H---HHHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCC-CC----cCCC
Q 013835 137 --LSRVKQPAGYRLSYQIVDSLI-W---LGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSP-HL----VPKP 205 (435)
Q Consensus 137 --~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~ 205 (435)
...+..|....+........+ . ..+....+.+.+ ..... ....|+- ++ +...
T Consensus 162 ~~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~----~~~a~-------------gvlvNTf~eLE~~~~~~l 224 (470)
T PLN03015 162 DIKEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLE----VPMSD-------------GVLVNTWEELQGNTLAAL 224 (470)
T ss_pred CCCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHh----cccCC-------------EEEEechHHHhHHHHHHH
Confidence 000000111101111111000 0 001111111111 11111 1111211 11 0001
Q ss_pred CC-------CCCCCeeeecccccCCCCCCCchHHHHHHHcCC--CcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEE
Q 013835 206 KD-------WGPKVDVVGFCFLDLASNYEPPESLVKWLEAGS--KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIIN 276 (435)
Q Consensus 206 ~~-------~~~~~~~vG~~~~~~~~~~~~~~~l~~~~~~~~--~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~ 276 (435)
+. ..+.+..+||+...... ...++++.+|+++++ .+|||++||......++ ++.+..+|+..+.+|+|+
T Consensus 225 ~~~~~~~~~~~~~v~~VGPl~~~~~~-~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q-~~ela~gl~~s~~~FlWv 302 (470)
T PLN03015 225 REDMELNRVMKVPVYPIGPIVRTNVH-VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQ-TVELAWGLELSGQRFVWV 302 (470)
T ss_pred HhhcccccccCCceEEecCCCCCccc-ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHH-HHHHHHHHHhCCCcEEEE
Confidence 11 01347889998632111 122347999999864 49999999997666555 566999999999999999
Q ss_pred cCCCC---------CCCCC-CCCCc---------eEEcCCCChhhh--cccccEEEEeCCchHHHHHHHhCCCEEeecCC
Q 013835 277 KGWGG---------LGNLA-EPKDS---------IYLLDNIPHDWL--FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFF 335 (435)
Q Consensus 277 ~~~~~---------~~~~~-~~~~~---------v~~~~~~p~~~~--l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~ 335 (435)
..... .+... .+|+| +++.+|+||.++ |+++.+|||||||||++||+++|||||++|.+
T Consensus 303 ~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~ 382 (470)
T PLN03015 303 LRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLY 382 (470)
T ss_pred EecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccc
Confidence 85321 01111 24555 677899999999 67788999999999999999999999999999
Q ss_pred CChhhHHHHH-HHcCCCCCCCC----CCCCCHHHHHHHHHHhc-C-----HHHHHHHHHHHHHhhcc----CcHHHHHHH
Q 013835 336 GDQPFWGERV-HARGVGPPPIP----VDEFSLPKLINAINFML-D-----PKVKERAVELAEAMEKE----DGVTGAVKA 400 (435)
Q Consensus 336 ~dQ~~na~~v-~~~g~G~~~l~----~~~~~~~~l~~~i~~ll-~-----~~~~~~~~~~~~~~~~~----~~~~~~~~~ 400 (435)
.||..||+++ +..|+|+ .+. ....+.++++++|++++ + +++|++++++++..++. ++..+.++.
T Consensus 383 ~DQ~~na~~~~~~~gvg~-~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~ 461 (470)
T PLN03015 383 AEQWMNATLLTEEIGVAV-RTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFE 461 (470)
T ss_pred cchHHHHHHHHHHhCeeE-EecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 9999999988 6779998 674 22478999999999999 3 47899999999887653 345566666
Q ss_pred HHHh
Q 013835 401 FFKH 404 (435)
Q Consensus 401 i~~~ 404 (435)
+.+.
T Consensus 462 ~~~~ 465 (470)
T PLN03015 462 WAKR 465 (470)
T ss_pred HHHh
Confidence 5544
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=3e-34 Score=283.58 Aligned_cols=407 Identities=21% Similarity=0.217 Sum_probs=245.0
Q ss_pred CcccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHh-cC---ceeEEc---cccccCCCCCCCCCchh-hHHHHH
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLT-AG---LEFYPL---DMVKNKGFLPSGPSEIP-VQRNQM 72 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~-~g---~~~~~i---~~~~~~~~~~~~~~~~~-~~~~~~ 72 (435)
++++|++||++|+..+|+.|+++||+||+++.......... .. ...+.. .........+....... ......
T Consensus 10 l~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (496)
T KOG1192|consen 10 LVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLDISESL 89 (496)
T ss_pred EEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHHHHHHH
Confidence 35788999999999999999999999999986543322211 11 111111 10000000000000000 000001
Q ss_pred HHHHHHHHhhccCCCc--cCCcccCcCEEEeCCcchhHHHHHHHcC-CCEEEeeccCCCC-CCCCCCCCcccCCCcc---
Q 013835 73 KEIIYSLLPACRDPDL--DSGIAFKADAIIANPPAYGHVHVAEALK-IPIHIFFTMPWTP-TSEFPHPLSRVKQPAG--- 145 (435)
Q Consensus 73 ~~~~~~~~~~~~~~~~--~~~~~~~pDlVi~d~~~~~~~~~A~~~~-iP~v~~~~~~~~~-~~~~p~~~~~~~~~~~--- 145 (435)
..+.........+... ......++|++|+|.+..+...++.... +|..++++..... ..+.|.+..+.+....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~ 169 (496)
T KOG1192|consen 90 LELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLSYVPSPFSLSS 169 (496)
T ss_pred HHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcccccCcccCccc
Confidence 1111111111111111 1122224999999987555455565554 7777766544332 2233333332221111
Q ss_pred -chH-HHHHHHHH----HHHHHhH-----HHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCCCCcCC-CCCCCCCCe
Q 013835 146 -YRL-SYQIVDSL----IWLGIRD-----MINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPK-PKDWGPKVD 213 (435)
Q Consensus 146 -~~~-~~~~~~~~----~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 213 (435)
... .+...... +...... ..+..... ......................+++++..... +++..+++.
T Consensus 170 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~~~~~~~~~v~ 248 (496)
T KOG1192|consen 170 GDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKE-LLGDILNWKPTASGIIVNASFIFLNSNPLLDFEPRPLLPKVI 248 (496)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-hCCCcccccccHHHhhhcCeEEEEccCcccCCCCCCCCCCce
Confidence 001 11111111 1111110 11222221 22221111111111222333556667666666 556689999
Q ss_pred eeecccccCCCCCC-CchHHHHHHHcC-CCcEEEeeCCCCC--CChHHHHHHHHHHHHHh-CCeEEEEcCCCCC----CC
Q 013835 214 VVGFCFLDLASNYE-PPESLVKWLEAG-SKPIYIGFGSLPV--QEPEKMTQIIVEAFEQT-GQRGIINKGWGGL----GN 284 (435)
Q Consensus 214 ~vG~~~~~~~~~~~-~~~~l~~~~~~~-~~~v~v~~Gs~~~--~~~~~~~~~~~~~~~~~-~~~~iv~~~~~~~----~~ 284 (435)
.+||+......... .+.++.+.++.. +.+|||++||... ..+++....++.+++.. +..|+|....... +.
T Consensus 249 ~IG~l~~~~~~~~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~~~~~ 328 (496)
T KOG1192|consen 249 PIGPLHVKDSKQKSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDDSIYFPEG 328 (496)
T ss_pred EECcEEecCccccccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCCcchhhhhc
Confidence 99999876443333 456666666653 4799999999963 45666778899999999 7788888754322 22
Q ss_pred CCC-CCCceEEcCCCChhh--h-cccccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCC
Q 013835 285 LAE-PKDSIYLLDNIPHDW--L-FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEF 360 (435)
Q Consensus 285 ~~~-~~~~v~~~~~~p~~~--~-l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~ 360 (435)
+.+ .++||...+|+||.+ + |+++++||||||+||++|++++|||+|++|.++||..||+++++.|.|. ++...++
T Consensus 329 ~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~-v~~~~~~ 407 (496)
T KOG1192|consen 329 LPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGG-VLDKRDL 407 (496)
T ss_pred CCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCccccchhHHHHHHhCCCEE-EEehhhc
Confidence 323 256899999999999 5 8889999999999999999999999999999999999999999998886 7777777
Q ss_pred CHHHHHHHHHHhc-CHHHHHHHHHHHHHhhccC-cHHHHHHHHHHhccccC
Q 013835 361 SLPKLINAINFML-DPKVKERAVELAEAMEKED-GVTGAVKAFFKHYSRSK 409 (435)
Q Consensus 361 ~~~~l~~~i~~ll-~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~ 409 (435)
+..++.+++.+++ +++|.++++++++.++++. .++.++.++|-..+..+
T Consensus 408 ~~~~~~~~~~~il~~~~y~~~~~~l~~~~~~~p~~~~~~~~~~e~~~~~~~ 458 (496)
T KOG1192|consen 408 VSEELLEAIKEILENEEYKEAAKRLSEILRDQPISPELAVKWVEFVARHGG 458 (496)
T ss_pred CcHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Confidence 7777999999999 9999999999999998864 33777766665555443
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.97 E-value=2.9e-29 Score=234.26 Aligned_cols=331 Identities=13% Similarity=0.110 Sum_probs=206.2
Q ss_pred CcccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcH--HHHHhcCceeEEccccccCCCCCCCCCchhhHHHHHHHHHHH
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFK--DFVLTAGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYS 78 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~--~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (435)
|.+.||.||++|.+++|++|.++||+|+|++..... +.+...|+++..++.. .. .+...+... .....+...
T Consensus 6 ~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~---~l--~~~~~~~~~-~~~~~~~~~ 79 (352)
T PRK12446 6 FTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSG---KL--RRYFDLKNI-KDPFLVMKG 79 (352)
T ss_pred EEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEecc---Cc--CCCchHHHH-HHHHHHHHH
Confidence 467899999999999999999999999999865432 3455678888888621 11 111122211 111111111
Q ss_pred HHhhccCCCccCCcccCcCEEEeC--CcchhHHHHHHHcCCCEEEeeccCCCCCCCCCCCCcccCCCccchHHHHHHHHH
Q 013835 79 LLPACRDPDLDSGIAFKADAIIAN--PPAYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQIVDSL 156 (435)
Q Consensus 79 ~~~~~~~~~~~~~~~~~pDlVi~d--~~~~~~~~~A~~~~iP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 156 (435)
.+.. .+.+++++||+|++. +.+.++.++|+.+++|++..-... +| ...++
T Consensus 80 ~~~~-----~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~------~~----------------g~~nr- 131 (352)
T PRK12446 80 VMDA-----YVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM------TP----------------GLANK- 131 (352)
T ss_pred HHHH-----HHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC------Cc----------------cHHHH-
Confidence 1111 134677899999975 445557899999999998743210 00 00011
Q ss_pred HHHHHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCCCCcCCCCCCC-CCCeeeecccccCCCCCCCchHHHHH
Q 013835 157 IWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWG-PKVDVVGFCFLDLASNYEPPESLVKW 235 (435)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vG~~~~~~~~~~~~~~~l~~~ 235 (435)
....+.++ +...|++ ....++ .++.++|+...+.... ...+...+.
T Consensus 132 -------~~~~~a~~---------------------v~~~f~~----~~~~~~~~k~~~tG~Pvr~~~~~-~~~~~~~~~ 178 (352)
T PRK12446 132 -------IALRFASK---------------------IFVTFEE----AAKHLPKEKVIYTGSPVREEVLK-GNREKGLAF 178 (352)
T ss_pred -------HHHHhhCE---------------------EEEEccc----hhhhCCCCCeEEECCcCCccccc-ccchHHHHh
Confidence 11111111 0000111 001122 4677888643222111 111122222
Q ss_pred H--HcCCCcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCC-C-hhhhcccccEEE
Q 013835 236 L--EAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNI-P-HDWLFLQCKAVV 311 (435)
Q Consensus 236 ~--~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~-p-~~~~l~~~~l~I 311 (435)
+ +.++++|+|..||.+.....+.+..++..+.. +.++++.+|..+.+.......++.+.+|+ + ..+++++||++|
T Consensus 179 ~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~~~~~~~~~~~~~~~~f~~~~m~~~~~~adlvI 257 (352)
T PRK12446 179 LGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGNLDDSLQNKEGYRQFEYVHGELPDILAITDFVI 257 (352)
T ss_pred cCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCchHHHHHhhcCCcEEecchhhhHHHHHHhCCEEE
Confidence 2 23457999999999754443444444443322 47888888765422211111355667887 4 456699999999
Q ss_pred EeCCchHHHHHHHhCCCEEeecCC-----CChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHH
Q 013835 312 HHGGAGTTAAGLRAACPTTIVPFF-----GDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELA 385 (435)
Q Consensus 312 ~hgG~~s~~Eal~~G~P~l~~P~~-----~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~ 385 (435)
||||.+|+.|++++|+|+|++|.. .||..||+++++.|+|. .+..++++++.|.+++.+++ |++.++ +..
T Consensus 258 sr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~-~l~~~~~~~~~l~~~l~~ll~~~~~~~---~~~ 333 (352)
T PRK12446 258 SRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYAS-VLYEEDVTVNSLIKHVEELSHNNEKYK---TAL 333 (352)
T ss_pred ECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEE-EcchhcCCHHHHHHHHHHHHcCHHHHH---HHH
Confidence 999999999999999999999974 48999999999999997 88888999999999999999 865443 233
Q ss_pred HHhhccCcHHHHHHHHHH
Q 013835 386 EAMEKEDGVTGAVKAFFK 403 (435)
Q Consensus 386 ~~~~~~~~~~~~~~~i~~ 403 (435)
+.+...++++++++.+++
T Consensus 334 ~~~~~~~aa~~i~~~i~~ 351 (352)
T PRK12446 334 KKYNGKEAIQTIIDHISE 351 (352)
T ss_pred HHcCCCCHHHHHHHHHHh
Confidence 445566778888887754
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.96 E-value=1.1e-27 Score=223.26 Aligned_cols=305 Identities=15% Similarity=0.144 Sum_probs=187.7
Q ss_pred ccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHhcCceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHHHhh
Q 013835 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLLPA 82 (435)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (435)
...|.||++++++||++| +||+|+|++.+...+.+... +.+..++...... ........... .....+.. .+..
T Consensus 8 ~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~-~~~~ 81 (318)
T PF13528_consen 8 QGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR-FPVREIPGLGPIQ-ENGRLDRWKTV-RNNIRWLA-RLAR 81 (318)
T ss_pred CCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc-cCEEEccCceEec-cCCccchHHHH-HHHHHhhH-HHHH
Confidence 345899999999999999 59999999988776666555 6776665211111 11111111111 11111111 1111
Q ss_pred ccCCCccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCCCCCCCCcccCCCccchHHHHHHHHHHHHHHh
Q 013835 83 CRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQIVDSLIWLGIR 162 (435)
Q Consensus 83 ~~~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (435)
..+.+.+.+++++||+||+|....+ ..+|+..|+|++.+.+..+........+. . ....
T Consensus 82 ~~~~~~~~l~~~~pDlVIsD~~~~~-~~aa~~~giP~i~i~~~~~~~~~~~~~~~--------~------------~~~~ 140 (318)
T PF13528_consen 82 RIRREIRWLREFRPDLVISDFYPLA-ALAARRAGIPVIVISNQYWFLHPNFWLPW--------D------------QDFG 140 (318)
T ss_pred HHHHHHHHHHhcCCCEEEEcChHHH-HHHHHhcCCCEEEEEehHHcccccCCcch--------h------------hhHH
Confidence 2222234566779999999965554 68999999999998765443211100000 0 0011
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCCCCcCCCCCCCCCCeeeecccccCCCCCCCchHHHHHHHcCCCc
Q 013835 163 DMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLASNYEPPESLVKWLEAGSKP 242 (435)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~l~~~~~~~~~~ 242 (435)
..++++..+ ....+.... +.. + +. .+.....++.++||+...... .. ...+++.
T Consensus 141 ~~~~~~~~~-~~~~~~~~~-----------l~~---~-~~-~~~~~~~~~~~~~p~~~~~~~--~~-------~~~~~~~ 194 (318)
T PF13528_consen 141 RLIERYIDR-YHFPPADRR-----------LAL---S-FY-PPLPPFFRVPFVGPIIRPEIR--EL-------PPEDEPK 194 (318)
T ss_pred HHHHHhhhh-ccCCcccce-----------ecC---C-cc-ccccccccccccCchhccccc--cc-------CCCCCCE
Confidence 112222221 101111110 000 0 01 111223456678886432111 11 1124568
Q ss_pred EEEeeCCCCCCChHHHHHHHHHHHHHhC-CeEEEEcCCCCCCCCCCCCCceEEcCCC--ChhhhcccccEEEEeCCchHH
Q 013835 243 IYIGFGSLPVQEPEKMTQIIVEAFEQTG-QRGIINKGWGGLGNLAEPKDSIYLLDNI--PHDWLFLQCKAVVHHGGAGTT 319 (435)
Q Consensus 243 v~v~~Gs~~~~~~~~~~~~~~~~~~~~~-~~~iv~~~~~~~~~~~~~~~~v~~~~~~--p~~~~l~~~~l~I~hgG~~s~ 319 (435)
|+|++|+.... .++++++..+ ..+++. |....+ ..++|+.+.++. ...++|++||++|+|||+||+
T Consensus 195 iLv~~gg~~~~-------~~~~~l~~~~~~~~~v~-g~~~~~---~~~~ni~~~~~~~~~~~~~m~~ad~vIs~~G~~t~ 263 (318)
T PF13528_consen 195 ILVYFGGGGPG-------DLIEALKALPDYQFIVF-GPNAAD---PRPGNIHVRPFSTPDFAELMAAADLVISKGGYTTI 263 (318)
T ss_pred EEEEeCCCcHH-------HHHHHHHhCCCCeEEEE-cCCccc---ccCCCEEEeecChHHHHHHHHhCCEEEECCCHHHH
Confidence 99999987532 3556666665 567766 444311 237899999986 455669999999999999999
Q ss_pred HHHHHhCCCEEeecC--CCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHh
Q 013835 320 AAGLRAACPTTIVPF--FGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFM 372 (435)
Q Consensus 320 ~Eal~~G~P~l~~P~--~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~l 372 (435)
+||+++|+|+|++|. +.||..||+.++++|+|+ .++.++++++.|.+.|+++
T Consensus 264 ~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~-~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 264 SEALALGKPALVIPRPGQDEQEYNARKLEELGLGI-VLSQEDLTPERLAEFLERL 317 (318)
T ss_pred HHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeE-EcccccCCHHHHHHHHhcC
Confidence 999999999999998 689999999999999997 8988999999999999875
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=2.1e-27 Score=218.76 Aligned_cols=332 Identities=21% Similarity=0.215 Sum_probs=214.0
Q ss_pred cccCCccchhHHHHHHHHHHHCCCe-EEEEeC-CCcHH-HHHhcCceeEEccccccCCCCCCCCCchhhHHHHHHHHHHH
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHR-VRLATH-SNFKD-FVLTAGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYS 78 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~-V~~~~~-~~~~~-~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (435)
...||.||+.|.++++++|.++|++ |.++.. ..... .....++++..++..... +...+......+..+ ..
T Consensus 6 ~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~-----~~~~~~~~~~~~~~~-~~ 79 (357)
T COG0707 6 TAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLR-----RKGSLKLLKAPFKLL-KG 79 (357)
T ss_pred EeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEeccccc-----ccCcHHHHHHHHHHH-HH
Confidence 4678999999999999999999995 766633 33332 344568888888721111 111121111111111 11
Q ss_pred HHhhccCCCccCCcccCcCEEEe--CCcchhHHHHHHHcCCCEEEeeccCCCCCCCCCCCCcccCCCccchHHHHHHHHH
Q 013835 79 LLPACRDPDLDSGIAFKADAIIA--NPPAYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQIVDSL 156 (435)
Q Consensus 79 ~~~~~~~~~~~~~~~~~pDlVi~--d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 156 (435)
... ..+++++++||+|+. .+.+.++.++|..+|||+++--+... | -..
T Consensus 80 ~~~-----a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~------~------------G~a------- 129 (357)
T COG0707 80 VLQ-----ARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAV------P------------GLA------- 129 (357)
T ss_pred HHH-----HHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCC------c------------chh-------
Confidence 111 124567789999998 36666778999999999988432100 0 000
Q ss_pred HHHHHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCCCCcCCCCCCCCCCeeeecccccCCCCCCCchHHHHHH
Q 013835 157 IWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLASNYEPPESLVKWL 236 (435)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~l~~~~ 236 (435)
......+.+. +. .. |.. .....-..++..+|........ +.+....+..
T Consensus 130 -----nk~~~~~a~~---------V~----------~~--f~~---~~~~~~~~~~~~tG~Pvr~~~~--~~~~~~~~~~ 178 (357)
T COG0707 130 -----NKILSKFAKK---------VA----------SA--FPK---LEAGVKPENVVVTGIPVRPEFE--ELPAAEVRKD 178 (357)
T ss_pred -----HHHhHHhhce---------ee----------ec--ccc---ccccCCCCceEEecCcccHHhh--ccchhhhhhh
Confidence 0011111110 00 00 000 0000112357777742221111 1122222221
Q ss_pred H-cCCCcEEEeeCCCCCCChHHHHHHHHHHHHHh--CCeEEEEcCCCCCCCCC----CCCCceEEcCCCChhhh-ccccc
Q 013835 237 E-AGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT--GQRGIINKGWGGLGNLA----EPKDSIYLLDNIPHDWL-FLQCK 308 (435)
Q Consensus 237 ~-~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~--~~~~iv~~~~~~~~~~~----~~~~~v~~~~~~p~~~~-l~~~~ 308 (435)
. .++++|+|..||.+... +.+.+.++.... +..+++.+|....+... +... +.+.+|+..+.. ++.+|
T Consensus 179 ~~~~~~~ilV~GGS~Ga~~---ln~~v~~~~~~l~~~~~v~~~~G~~~~~~~~~~~~~~~~-~~v~~f~~dm~~~~~~AD 254 (357)
T COG0707 179 GRLDKKTILVTGGSQGAKA---LNDLVPEALAKLANRIQVIHQTGKNDLEELKSAYNELGV-VRVLPFIDDMAALLAAAD 254 (357)
T ss_pred ccCCCcEEEEECCcchhHH---HHHHHHHHHHHhhhCeEEEEEcCcchHHHHHHHHhhcCc-EEEeeHHhhHHHHHHhcc
Confidence 1 24679999999987543 333344444333 46888888766422222 2223 888999876555 99999
Q ss_pred EEEEeCCchHHHHHHHhCCCEEeecCC----CChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHH
Q 013835 309 AVVHHGGAGTTAAGLRAACPTTIVPFF----GDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVE 383 (435)
Q Consensus 309 l~I~hgG~~s~~Eal~~G~P~l~~P~~----~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~ 383 (435)
++||++|.+|+.|++++|+|+|.+|.. .||..||+.+++.|.|. .++.++++++++.+.|.+++ +++-.+.+++
T Consensus 255 LvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~-~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~ 333 (357)
T COG0707 255 LVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAAL-VIRQSELTPEKLAELILRLLSNPEKLKAMAE 333 (357)
T ss_pred EEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEE-EeccccCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999999999999864 48999999999999997 99999999999999999999 8899999999
Q ss_pred HHHHhhccCcHHHHHHHHHHhc
Q 013835 384 LAEAMEKEDGVTGAVKAFFKHY 405 (435)
Q Consensus 384 ~~~~~~~~~~~~~~~~~i~~~l 405 (435)
.++.+...+.++++++.++...
T Consensus 334 ~a~~~~~p~aa~~i~~~~~~~~ 355 (357)
T COG0707 334 NAKKLGKPDAAERIADLLLALA 355 (357)
T ss_pred HHHhcCCCCHHHHHHHHHHHHh
Confidence 9999988999999999988764
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.93 E-value=7.3e-25 Score=203.56 Aligned_cols=300 Identities=16% Similarity=0.178 Sum_probs=169.1
Q ss_pred cCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHhcCce-eEEccccccCCCCCCCCCchhhHHHHHHHHHHHHHhh
Q 013835 4 VGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLE-FYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLLPA 82 (435)
Q Consensus 4 ~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~~g~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (435)
..+.||+.|++++|++|.+ ||+|++++.+.....+...++. +..++..... ...+..+..........+.. .
T Consensus 8 g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~l~~~~~~~~----~ 80 (321)
T TIGR00661 8 GEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKYGFKVFETFPGIKLK--GEDGKVNIVKTLRNKEYSPK----K 80 (321)
T ss_pred ccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhhcCcceeccCCceEe--ecCCcCcHHHHHHhhccccH----H
Confidence 3455999999999999999 9999999888766777777776 4333311100 01111111110000001100 1
Q ss_pred ccCCCccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCCCCCCCCcccCCCccchHHHHHHHHHHHHHHh
Q 013835 83 CRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQIVDSLIWLGIR 162 (435)
Q Consensus 83 ~~~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (435)
......+.+++++||+||+| ..+.+..+|+.+|||++.+..+... .+|... .... + ...
T Consensus 81 ~~~~~~~~l~~~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~---~~~~~~--------~~~~--------~-~~~ 139 (321)
T TIGR00661 81 AIRREINIIREYNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT---RYPLKT--------DLIV--------Y-PTM 139 (321)
T ss_pred HHHHHHHHHHhcCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh---cCCccc--------chhH--------H-HHH
Confidence 11112345677899999999 4444478999999999988653221 111110 0000 0 001
Q ss_pred HHHHHHHHh--ccCCCCCCCCCCCCCCCCCCCeeEeeCCCCcCCCCCCCCCCe-eeecccccCCCCCCCchHHHHHHHcC
Q 013835 163 DMINDVRKK--KLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVD-VVGFCFLDLASNYEPPESLVKWLEAG 239 (435)
Q Consensus 163 ~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vG~~~~~~~~~~~~~~~l~~~~~~~ 239 (435)
..+..+... .++.+...... . ..++... +-++.. .....++....
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~-------~----------------~~p~~~~~~~~~~~---------~~~~~~~~~~~ 187 (321)
T TIGR00661 140 AALRIFNERCERFIVPDYPFPY-------T----------------ICPKIIKNMEGPLI---------RYDVDDVDNYG 187 (321)
T ss_pred HHHHHhccccceEeeecCCCCC-------C----------------CCccccccCCCccc---------chhhhccccCC
Confidence 111111100 01001000000 0 0000000 001110 11112222223
Q ss_pred CCcEEEeeCCCCCCChHHHHHHHHHHHHHhCC-eEEEEcCCCCCCCCCCCCCceEEcCCCC--hhhhcccccEEEEeCCc
Q 013835 240 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQ-RGIINKGWGGLGNLAEPKDSIYLLDNIP--HDWLFLQCKAVVHHGGA 316 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~-~~iv~~~~~~~~~~~~~~~~v~~~~~~p--~~~~l~~~~l~I~hgG~ 316 (435)
++.|+|.+|+.. .. .+++++.+.+. .++++ +... .....++|+.+.+|.| ..++++.||++|||||+
T Consensus 188 ~~~iLv~~g~~~---~~----~l~~~l~~~~~~~~i~~-~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~ad~vI~~~G~ 257 (321)
T TIGR00661 188 EDYILVYIGFEY---RY----KILELLGKIANVKFVCY-SYEV--AKNSYNENVEIRRITTDNFKELIKNAELVITHGGF 257 (321)
T ss_pred CCcEEEECCcCC---HH----HHHHHHHhCCCeEEEEe-CCCC--CccccCCCEEEEECChHHHHHHHHhCCEEEECCCh
Confidence 467888887753 22 34566666654 44443 2221 1124568999999997 33448999999999999
Q ss_pred hHHHHHHHhCCCEEeecCCC--ChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHH
Q 013835 317 GTTAAGLRAACPTTIVPFFG--DQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKV 377 (435)
Q Consensus 317 ~s~~Eal~~G~P~l~~P~~~--dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~ 377 (435)
+|++||+++|+|+|++|... ||..||+.+++.|+|+ .++..++ ++.+++.+++ ++.|
T Consensus 258 ~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~-~l~~~~~---~~~~~~~~~~~~~~~ 317 (321)
T TIGR00661 258 SLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGI-ALEYKEL---RLLEAILDIRNMKRY 317 (321)
T ss_pred HHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEE-EcChhhH---HHHHHHHhccccccc
Confidence 99999999999999999854 8999999999999997 7876654 6666666666 6544
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.89 E-value=3.3e-21 Score=182.54 Aligned_cols=334 Identities=19% Similarity=0.183 Sum_probs=201.0
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCCCc--HHHHHhcCceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHH
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF--KDFVLTAGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSL 79 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~--~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (435)
.+.|..||...++.+|++|.++||+|++++.+.. ....+..|++++.++.... .+........ ....+....
T Consensus 7 ~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~l~-~~~~~~~~~ 80 (357)
T PRK00726 7 AGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGL-----RRKGSLANLK-APFKLLKGV 80 (357)
T ss_pred EcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCc-----CCCChHHHHH-HHHHHHHHH
Confidence 3456889999999999999999999999987552 2233446888887762111 0111111111 111111111
Q ss_pred HhhccCCCccCCcccCcCEEEeCC--cchhHHHHHHHcCCCEEEeeccCCCCCCCCCCCCcccCCCccchHHHHHHHHHH
Q 013835 80 LPACRDPDLDSGIAFKADAIIANP--PAYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQIVDSLI 157 (435)
Q Consensus 80 ~~~~~~~~~~~~~~~~pDlVi~d~--~~~~~~~~A~~~~iP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 157 (435)
. .+.+.+++.+||+|++.. ..+.+.++++..++|+|..... + .+ . ...++.
T Consensus 81 ~-----~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~-~-----~~-----------~-----~~~r~~ 133 (357)
T PRK00726 81 L-----QARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN-A-----VP-----------G-----LANKLL 133 (357)
T ss_pred H-----HHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC-C-----Cc-----------c-----HHHHHH
Confidence 1 112335566999999974 2444567788899999864210 0 00 0 001110
Q ss_pred HHHHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCCCCcCCCCCCCCCCeeeecccccCCCCCCCchHHHHHH-
Q 013835 158 WLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLASNYEPPESLVKWL- 236 (435)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~l~~~~- 236 (435)
.. ..+.+ .... ...+ .. .-..++.++|....... +..+..-..+.
T Consensus 134 ~~----~~d~i-------------i~~~------------~~~~-~~--~~~~~i~vi~n~v~~~~--~~~~~~~~~~~~ 179 (357)
T PRK00726 134 AR----FAKKV-------------ATAF------------PGAF-PE--FFKPKAVVTGNPVREEI--LALAAPPARLAG 179 (357)
T ss_pred HH----Hhchh-------------eECc------------hhhh-hc--cCCCCEEEECCCCChHh--hcccchhhhccC
Confidence 00 00000 0000 0000 00 11245666664321111 01111001111
Q ss_pred HcCCCcEEEeeCCCCCCChHHHHHHHHHHHHHhCC--eEEEEcCCCCCCCCC---CCCCceEEcCCC-ChhhhcccccEE
Q 013835 237 EAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQ--RGIINKGWGGLGNLA---EPKDSIYLLDNI-PHDWLFLQCKAV 310 (435)
Q Consensus 237 ~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~--~~iv~~~~~~~~~~~---~~~~~v~~~~~~-p~~~~l~~~~l~ 310 (435)
..+.++|++..|+.. ...+...+.+++++... .+++..|....+.+. +..-++.+.+|+ +..++++.+|++
T Consensus 180 ~~~~~~i~~~gg~~~---~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~ 256 (357)
T PRK00726 180 REGKPTLLVVGGSQG---ARVLNEAVPEALALLPEALQVIHQTGKGDLEEVRAAYAAGINAEVVPFIDDMAAAYAAADLV 256 (357)
T ss_pred CCCCeEEEEECCcHh---HHHHHHHHHHHHHHhhhCcEEEEEcCCCcHHHHHHHhhcCCcEEEeehHhhHHHHHHhCCEE
Confidence 112345666555532 12223333355554432 445555554322221 122348889998 445669999999
Q ss_pred EEeCCchHHHHHHHhCCCEEeecC----CCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHH
Q 013835 311 VHHGGAGTTAAGLRAACPTTIVPF----FGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELA 385 (435)
Q Consensus 311 I~hgG~~s~~Eal~~G~P~l~~P~----~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~ 385 (435)
|+|+|.++++||+++|+|+|++|. ..||..|+..+.+.|.|+ .++.++++++++.++|.+++ |+++++.+.+.+
T Consensus 257 i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~-~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 335 (357)
T PRK00726 257 ICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAAL-LIPQSDLTPEKLAEKLLELLSDPERLEAMAEAA 335 (357)
T ss_pred EECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEE-EEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 999999999999999999999996 368999999999999997 88877778999999999999 999999999999
Q ss_pred HHhhccCcHHHHHHHHHHhcc
Q 013835 386 EAMEKEDGVTGAVKAFFKHYS 406 (435)
Q Consensus 386 ~~~~~~~~~~~~~~~i~~~l~ 406 (435)
++..+.++.+++++.++++++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 336 RALGKPDAAERLADLIEELAR 356 (357)
T ss_pred HhcCCcCHHHHHHHHHHHHhh
Confidence 998888899999999988764
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.88 E-value=7e-21 Score=179.98 Aligned_cols=330 Identities=17% Similarity=0.153 Sum_probs=191.0
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcH--HHHHhcCceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHH
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFK--DFVLTAGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSL 79 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~--~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (435)
.+.++.||...+..+|++|.++||+|++++..... ......|+++..++.... .+...+..... ...+....
T Consensus 5 ~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~ 78 (350)
T cd03785 5 AGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGL-----RRKGSLKKLKA-PFKLLKGV 78 (350)
T ss_pred EecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecCc-----CCCChHHHHHH-HHHHHHHH
Confidence 45678899999999999999999999999865422 222335677777762111 01111111111 11111110
Q ss_pred HhhccCCCccCCcccCcCEEEeCC--cchhHHHHHHHcCCCEEEeeccCCCCCCCCCCCCcccCCCccchHHHHHHHHHH
Q 013835 80 LPACRDPDLDSGIAFKADAIIANP--PAYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQIVDSLI 157 (435)
Q Consensus 80 ~~~~~~~~~~~~~~~~pDlVi~d~--~~~~~~~~A~~~~iP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 157 (435)
. .+.+.+++.+||+|+++. ....+..+|...++|++...... .+ . .
T Consensus 79 ~-----~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~------~~------------~----~----- 126 (350)
T cd03785 79 L-----QARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA------VP------------G----L----- 126 (350)
T ss_pred H-----HHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC------Cc------------c----H-----
Confidence 0 111234556999999863 34455678899999998632100 00 0 0
Q ss_pred HHHHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCCCCcCCCCCCCCCCeeeecccccCCCCCCCchHHHHHH-
Q 013835 158 WLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLASNYEPPESLVKWL- 236 (435)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~l~~~~- 236 (435)
.+++... . .+.+ ...++..... ..+.++.++|....... ........++.
T Consensus 127 -------~~~~~~~-~----~~~v-------------i~~s~~~~~~--~~~~~~~~i~n~v~~~~--~~~~~~~~~~~~ 177 (350)
T cd03785 127 -------ANRLLAR-F----ADRV-------------ALSFPETAKY--FPKDKAVVTGNPVREEI--LALDRERARLGL 177 (350)
T ss_pred -------HHHHHHH-h----hCEE-------------EEcchhhhhc--CCCCcEEEECCCCchHH--hhhhhhHHhcCC
Confidence 0011000 0 0000 0000000000 01235556664221110 01111111111
Q ss_pred HcCCCcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCC----CCCCceEEcCCC-ChhhhcccccEEE
Q 013835 237 EAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLA----EPKDSIYLLDNI-PHDWLFLQCKAVV 311 (435)
Q Consensus 237 ~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~----~~~~~v~~~~~~-p~~~~l~~~~l~I 311 (435)
+.++++|++..|+........++..+++.+...+..+++.+|....+.+. +..+|+.+.+|+ +..++++.||++|
T Consensus 178 ~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~v 257 (350)
T cd03785 178 RPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGDLEEVKKAYEELGVNYEVFPFIDDMAAAYAAADLVI 257 (350)
T ss_pred CCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCccHHHHHHHHhccCCCeEEeehhhhHHHHHHhcCEEE
Confidence 11233555555555321112222223333332344555555554322222 234689999998 4455699999999
Q ss_pred EeCCchHHHHHHHhCCCEEeecC----CCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 013835 312 HHGGAGTTAAGLRAACPTTIVPF----FGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAE 386 (435)
Q Consensus 312 ~hgG~~s~~Eal~~G~P~l~~P~----~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~ 386 (435)
+++|.+++.||+++|+|+|+.|. ..+|..|++.+.+.|+|+ .++..+.+.+++.++|++++ |++.++++.+.++
T Consensus 258 ~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~-~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 336 (350)
T cd03785 258 SRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAV-LIPQEELTPERLAAALLELLSDPERLKAMAEAAR 336 (350)
T ss_pred ECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEE-EEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999999999985 367999999999999997 78766568999999999999 9999999888888
Q ss_pred HhhccCcHHHHHH
Q 013835 387 AMEKEDGVTGAVK 399 (435)
Q Consensus 387 ~~~~~~~~~~~~~ 399 (435)
.....++++++++
T Consensus 337 ~~~~~~~~~~i~~ 349 (350)
T cd03785 337 SLARPDAAERIAD 349 (350)
T ss_pred hcCCCCHHHHHHh
Confidence 8777777888776
No 34
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.86 E-value=3.7e-20 Score=162.26 Aligned_cols=340 Identities=16% Similarity=0.186 Sum_probs=207.3
Q ss_pred CccchhHHHHHHHHHHHC--CCeEEEEeCCCcHH-HHHhcCceeEEcccccc--CCCCCCCCCchhhHHHHHHHHHHHHH
Q 013835 6 TRGDVQPFVAIGKRLQDY--GHRVRLATHSNFKD-FVLTAGLEFYPLDMVKN--KGFLPSGPSEIPVQRNQMKEIIYSLL 80 (435)
Q Consensus 6 ~~GH~~p~~~la~~L~~r--Gh~V~~~~~~~~~~-~~~~~g~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
+.||+.++..||++|.+. |.+|++++...... .-...|+.++.+|.... .+.......+.. ...+.++..+++
T Consensus 21 GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~~~--l~e~~~~Rs~li 98 (400)
T COG4671 21 GLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLDGD--LEETKKLRSQLI 98 (400)
T ss_pred cchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceEecCceEecCCCceeeeecCCC--HHHHHHHHHHHH
Confidence 689999999999999987 99999998765433 33348999999983222 122111111121 334444444443
Q ss_pred hhccCCCccCCcccCcCEEEeCCcchhH-----HHHH--HHcCCCEEEeeccCCCCCCCCCCCCcccCCCccchHHHHHH
Q 013835 81 PACRDPDLDSGIAFKADAIIANPPAYGH-----VHVA--EALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQIV 153 (435)
Q Consensus 81 ~~~~~~~~~~~~~~~pDlVi~d~~~~~~-----~~~A--~~~~iP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 153 (435)
-. +.+.++||++|+|.+-++. ..++ +..+-+.+...+ .-.+.|... ...|+..
T Consensus 99 l~-------t~~~fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~lr----~i~D~p~~~---------~~~w~~~ 158 (400)
T COG4671 99 LS-------TAETFKPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLGLR----SIRDIPQEL---------EADWRRA 158 (400)
T ss_pred HH-------HHHhcCCCEEEEeccccchhhhhhHHHHHHhhcCCcceeehH----hhhhchhhh---------ccchhhh
Confidence 33 3456799999999655541 1112 122212211100 000111110 0001000
Q ss_pred HHHHHHHHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCCCC------cCCCCCCCCCCeeeecccccCCCCCC
Q 013835 154 DSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHL------VPKPKDWGPKVDVVGFCFLDLASNYE 227 (435)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~vG~~~~~~~~~~~ 227 (435)
.....+++++.. ++...+|.+ ++.+.....++.|+|++..+.+.. +
T Consensus 159 ------~~~~~I~r~yD~---------------------V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~~~-~ 210 (400)
T COG4671 159 ------ETVRLINRFYDL---------------------VLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLPHL-P 210 (400)
T ss_pred ------HHHHHHHHhheE---------------------EEEecCccccChhhcCCccHhhhhheeEeEEeeccCcCC-C
Confidence 112223333321 111122222 233445567899999973221111 1
Q ss_pred CchHHHHHHHcCCCcEEEeeCCCCCCChHHHHHHHHHHHHHh-CC--eEEEEcCCCCCC-CCC------CCCCceEEcCC
Q 013835 228 PPESLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-GQ--RGIINKGWGGLG-NLA------EPKDSIYLLDN 297 (435)
Q Consensus 228 ~~~~l~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~-~~--~~iv~~~~~~~~-~~~------~~~~~v~~~~~ 297 (435)
.|.- | ...+..|+|+.|... ...++++..+++.... +. +.++.+|+.... ..+ ...+++.+..|
T Consensus 211 ~p~~---~-~pE~~~Ilvs~GGG~--dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f 284 (400)
T COG4671 211 LPPH---E-APEGFDILVSVGGGA--DGAELIETALAAAQLLAGLNHKWLIVTGPFMPEAQRQKLLASAPKRPHISIFEF 284 (400)
T ss_pred CCCc---C-CCccceEEEecCCCh--hhHHHHHHHHHHhhhCCCCCcceEEEeCCCCCHHHHHHHHHhcccCCCeEEEEh
Confidence 1110 0 023358888888754 4667888888887663 33 377777765322 211 23379999999
Q ss_pred CCh-hhhcccccEEEEeCCchHHHHHHHhCCCEEeecCC---CChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013835 298 IPH-DWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFF---GDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 373 (435)
Q Consensus 298 ~p~-~~~l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~---~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll 373 (435)
... .++++.|+++|+.||+||++|-|++|+|.|++|.. .||..-|.+++++|+.- ++.+++++++.++++|...+
T Consensus 285 ~~~~~~ll~gA~~vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~d-vL~pe~lt~~~La~al~~~l 363 (400)
T COG4671 285 RNDFESLLAGARLVVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVD-VLLPENLTPQNLADALKAAL 363 (400)
T ss_pred hhhHHHHHHhhheeeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcce-eeCcccCChHHHHHHHHhcc
Confidence 755 45599999999999999999999999999999965 48999999999999995 99999999999999999988
Q ss_pred C-HHHHHHHHHHHHHhhccCcHHHHHHHHHHhccccC
Q 013835 374 D-PKVKERAVELAEAMEKEDGVTGAVKAFFKHYSRSK 409 (435)
Q Consensus 374 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 409 (435)
+ |.... .--+.+|++..+..+..++.+..
T Consensus 364 ~~P~~~~-------~~L~L~G~~~~a~~l~e~L~~~~ 393 (400)
T COG4671 364 ARPSPSK-------PHLDLEGLEHIARILAELLSTRS 393 (400)
T ss_pred cCCCCCc-------cccCchhhHhHHHHHHHHhhhhc
Confidence 4 33222 11245788888888877765543
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.84 E-value=5.6e-19 Score=166.87 Aligned_cols=102 Identities=25% Similarity=0.311 Sum_probs=88.8
Q ss_pred ChhhhcccccEEEEeCCchHHHHHHHhCCCEEeecCC---CChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-C
Q 013835 299 PHDWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFF---GDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-D 374 (435)
Q Consensus 299 p~~~~l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~---~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~ 374 (435)
+..++++.||++|+++|.+++.||+++|+|+|++|.. .+|..|+..+++.|.|. .++..+.+++++.+++++++ |
T Consensus 243 ~~~~~l~~ad~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~-~~~~~~~~~~~l~~~i~~ll~~ 321 (348)
T TIGR01133 243 NMAAAYAAADLVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGL-VIRQKELLPEKLLEALLKLLLD 321 (348)
T ss_pred CHHHHHHhCCEEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEE-EEecccCCHHHHHHHHHHHHcC
Confidence 4455699999999999989999999999999999863 47888999999999997 78777778999999999999 9
Q ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHH
Q 013835 375 PKVKERAVELAEAMEKEDGVTGAVKAF 401 (435)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~i 401 (435)
++.++++.+.+++....+..+++++.|
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (348)
T TIGR01133 322 PANLEAMAEAARKLAKPDAAKRIAELI 348 (348)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHhhC
Confidence 999999998888887777888877653
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.82 E-value=3.6e-19 Score=168.81 Aligned_cols=330 Identities=15% Similarity=0.138 Sum_probs=183.4
Q ss_pred CcccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHhcCc----eeEEccccccCCCCCCCCCchhhHHHHHHHHH
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGL----EFYPLDMVKNKGFLPSGPSEIPVQRNQMKEII 76 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~~g~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (435)
|++.++.||++|. ++|++|+++|++|+|+..+. ..+++.|+ ++..++. .++......+..+.
T Consensus 10 i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg--~~m~~~g~~~~~~~~~l~v-----------~G~~~~l~~~~~~~ 75 (385)
T TIGR00215 10 LVAGEASGDILGA-GLRQQLKEHYPNARFIGVAG--PRMAAEGCEVLYSMEELSV-----------MGLREVLGRLGRLL 75 (385)
T ss_pred EEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEcc--HHHHhCcCccccChHHhhh-----------ccHHHHHHHHHHHH
Confidence 3577899999999 99999999999999997543 24455553 3333331 11211111222221
Q ss_pred HHHHhhccCCCccCCcccCcCEEEe-CCcchhHHH--HHHHcCCCEEEee-ccCCCCCCCCCCCCcccCCCccchHHHHH
Q 013835 77 YSLLPACRDPDLDSGIAFKADAIIA-NPPAYGHVH--VAEALKIPIHIFF-TMPWTPTSEFPHPLSRVKQPAGYRLSYQI 152 (435)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~pDlVi~-d~~~~~~~~--~A~~~~iP~v~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 152 (435)
.... ...+.+++++||+||. |..++...+ +|+.+|||++... +..|.. ..+
T Consensus 76 ~~~~-----~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~waw--------------~~~------ 130 (385)
T TIGR00215 76 KIRK-----EVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVWAW--------------RKW------ 130 (385)
T ss_pred HHHH-----HHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHhhc--------------Ccc------
Confidence 1111 2234567789999986 654444334 8899999998642 111100 000
Q ss_pred HHHHHHHHHhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCCCCcCCCCCCCCCCeeeecccccCCCCC-CCchH
Q 013835 153 VDSLIWLGIRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLASNY-EPPES 231 (435)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~-~~~~~ 231 (435)
..+. +....+.+.- ..+. .. .++. ...-+..++|.-..+..... ...+.
T Consensus 131 ~~r~----l~~~~d~v~~---~~~~------------e~--------~~~~---~~g~~~~~vGnPv~~~~~~~~~~~~~ 180 (385)
T TIGR00215 131 RAKK----IEKATDFLLA---ILPF------------EK--------AFYQ---KKNVPCRFVGHPLLDAIPLYKPDRKS 180 (385)
T ss_pred hHHH----HHHHHhHhhc---cCCC------------cH--------HHHH---hcCCCEEEECCchhhhccccCCCHHH
Confidence 0000 0111111110 0000 00 0000 11124456663222211110 11222
Q ss_pred HHHHH--HcCCCcEEEeeCCCCCCChHHHHHHHHHHHHHh-----CCeEEEEcCCCC-CCCCC----C--CCCceEEcCC
Q 013835 232 LVKWL--EAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGG-LGNLA----E--PKDSIYLLDN 297 (435)
Q Consensus 232 l~~~~--~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~-----~~~~iv~~~~~~-~~~~~----~--~~~~v~~~~~ 297 (435)
..+.+ +.++++|.+..||.... ....+..++++++.. +.++++..++.. .+.+. . ....+.+..+
T Consensus 181 ~r~~lgl~~~~~~Ilvl~GSR~ae-i~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 259 (385)
T TIGR00215 181 AREKLGIDHNGETLALLPGSRGSE-VEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLIDG 259 (385)
T ss_pred HHHHcCCCCCCCEEEEECCCCHHH-HHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEECc
Confidence 22222 22346777777876432 133445555444432 345655443321 11111 1 1234444433
Q ss_pred CChhhhcccccEEEEeCCchHHHHHHHhCCCEEee----cCCC---------ChhhHHHHHHHcCCCCCCCCCCCCCHHH
Q 013835 298 IPHDWLFLQCKAVVHHGGAGTTAAGLRAACPTTIV----PFFG---------DQPFWGERVHARGVGPPPIPVDEFSLPK 364 (435)
Q Consensus 298 ~p~~~~l~~~~l~I~hgG~~s~~Eal~~G~P~l~~----P~~~---------dQ~~na~~v~~~g~G~~~l~~~~~~~~~ 364 (435)
....+++.||++|+.+|..|+ |++++|+|+|++ |... .|..|+..+...++.. .+..++.+++.
T Consensus 260 -~~~~~l~aADl~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~p-el~q~~~~~~~ 336 (385)
T TIGR00215 260 -DARKAMFAADAALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVP-ELLQEECTPHP 336 (385)
T ss_pred -hHHHHHHhCCEEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccch-hhcCCCCCHHH
Confidence 344569999999999999887 999999999999 7542 4889999999999996 88888999999
Q ss_pred HHHHHHHhc-CH----HHHHHH----HHHHHHhhccCcHHHHHHHHHH
Q 013835 365 LINAINFML-DP----KVKERA----VELAEAMEKEDGVTGAVKAFFK 403 (435)
Q Consensus 365 l~~~i~~ll-~~----~~~~~~----~~~~~~~~~~~~~~~~~~~i~~ 403 (435)
|.+.+.+++ |+ ++++.+ .++.+++.+.+..+++++.|.+
T Consensus 337 l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 337 LAIALLLLLENGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVLE 384 (385)
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 999999999 88 555444 4444444444456788887654
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.79 E-value=7.8e-18 Score=152.38 Aligned_cols=252 Identities=13% Similarity=0.104 Sum_probs=145.4
Q ss_pred CccchhHHHHHHHHHHHCCCeEEEEeCCCc---HHHHHhcCceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHHHhh
Q 013835 6 TRGDVQPFVAIGKRLQDYGHRVRLATHSNF---KDFVLTAGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLLPA 82 (435)
Q Consensus 6 ~~GH~~p~~~la~~L~~rGh~V~~~~~~~~---~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (435)
|.||+++|++||++|.++||+|+|++.+.. .+.+...|++++.++... ........+...
T Consensus 13 G~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~~~~~----------~~~~d~~~~~~~------- 75 (279)
T TIGR03590 13 GLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSAGFPVYELPDES----------SRYDDALELINL------- 75 (279)
T ss_pred cccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEecCCC----------chhhhHHHHHHH-------
Confidence 689999999999999999999999986542 467788999999886210 011111111111
Q ss_pred ccCCCccCCcccCcCEEEeCCcchhH-HHH-HHHcCCCEEEeeccCCCCCCCCCCCCcccCCCccchHHHHHHHHHHHHH
Q 013835 83 CRDPDLDSGIAFKADAIIANPPAYGH-VHV-AEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQIVDSLIWLG 160 (435)
Q Consensus 83 ~~~~~~~~~~~~~pDlVi~d~~~~~~-~~~-A~~~~iP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (435)
+++.+||+||.|.+.... +.- .+..+.+++.+--... .+..
T Consensus 76 --------l~~~~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~-----~~~~------------------------ 118 (279)
T TIGR03590 76 --------LEEEKFDILIVDHYGLDADWEKLIKEFGRKILVIDDLAD-----RPHD------------------------ 118 (279)
T ss_pred --------HHhcCCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCC-----CCcC------------------------
Confidence 233489999999764432 222 2334555555421000 0000
Q ss_pred HhHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCCCCcCCCCCCC-CCCeeeecccccCCCCCCCchHHHHHHHc-
Q 013835 161 IRDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWG-PKVDVVGFCFLDLASNYEPPESLVKWLEA- 238 (435)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vG~~~~~~~~~~~~~~~l~~~~~~- 238 (435)
.++-+..........+....+ ....+.|+-+....+++.... ..-..+
T Consensus 119 ----------------------------~D~vin~~~~~~~~~y~~~~~~~~~~l~G~~Y~~lr~eF~~~~--~~~~~~~ 168 (279)
T TIGR03590 119 ----------------------------CDLLLDQNLGADASDYQGLVPANCRLLLGPSYALLREEFYQLA--TANKRRK 168 (279)
T ss_pred ----------------------------CCEEEeCCCCcCHhHhcccCcCCCeEEecchHHhhhHHHHHhh--Hhhhccc
Confidence 000000000000000000012 234566763222111110000 000111
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHHHHHHh--CCeEEEEcCCCCC--CCCC---CCCCceEEcCCCChh-hhcccccEE
Q 013835 239 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT--GQRGIINKGWGGL--GNLA---EPKDSIYLLDNIPHD-WLFLQCKAV 310 (435)
Q Consensus 239 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~--~~~~iv~~~~~~~--~~~~---~~~~~v~~~~~~p~~-~~l~~~~l~ 310 (435)
..+.|+|++|+..... +...+++++.+. +.++.+++|.... +.+. ....|+.+..++++. ++|+.||++
T Consensus 169 ~~~~iLi~~GG~d~~~---~~~~~l~~l~~~~~~~~i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl~ 245 (279)
T TIGR03590 169 PLRRVLVSFGGADPDN---LTLKLLSALAESQINISITLVTGSSNPNLDELKKFAKEYPNIILFIDVENMAELMNEADLA 245 (279)
T ss_pred ccCeEEEEeCCcCCcC---HHHHHHHHHhccccCceEEEEECCCCcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCEE
Confidence 1257899999775433 334456666553 4567777765431 1121 234689999999875 569999999
Q ss_pred EEeCCchHHHHHHHhCCCEEeecCCCChhhHHHHH
Q 013835 311 VHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERV 345 (435)
Q Consensus 311 I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v 345 (435)
|++|| +|++|++++|+|+|++|...+|..||+.+
T Consensus 246 Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~~ 279 (279)
T TIGR03590 246 IGAAG-STSWERCCLGLPSLAICLAENQQSNSQQL 279 (279)
T ss_pred EECCc-hHHHHHHHcCCCEEEEEecccHHHHhhhC
Confidence 99999 89999999999999999999999999753
No 38
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.77 E-value=1.5e-17 Score=158.89 Aligned_cols=161 Identities=12% Similarity=0.105 Sum_probs=122.5
Q ss_pred CCcEEEeeCCCCCCChHHHHHHHHHHHHHh-CCeEEEEcCCCCC--CCC----CCCCCceEEcCCCChh-hhcccccEEE
Q 013835 240 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-GQRGIINKGWGGL--GNL----AEPKDSIYLLDNIPHD-WLFLQCKAVV 311 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~-~~~~iv~~~~~~~--~~~----~~~~~~v~~~~~~p~~-~~l~~~~l~I 311 (435)
++++++..|+..... .+..+++++.+. +.++++.+|.... +.+ .+.++|+.+.+|+++. ++++.||++|
T Consensus 202 ~~~il~~~G~~~~~k---~~~~li~~l~~~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~~v 278 (380)
T PRK13609 202 KKILLIMAGAHGVLG---NVKELCQSLMSVPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRVTSCMI 278 (380)
T ss_pred CcEEEEEcCCCCCCc---CHHHHHHHHhhCCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccEEE
Confidence 456777778775322 234466666554 4677766654321 111 2244689999999764 5699999999
Q ss_pred EeCCchHHHHHHHhCCCEEee-cCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHhh
Q 013835 312 HHGGAGTTAAGLRAACPTTIV-PFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAEAME 389 (435)
Q Consensus 312 ~hgG~~s~~Eal~~G~P~l~~-P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~~~~ 389 (435)
+.+|..++.||+++|+|+|+. |..+.+..|+..+++.|+|+ .. .+.+++.++|.+++ |++.++++.+.++++.
T Consensus 279 ~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~~~-~~----~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~ 353 (380)
T PRK13609 279 TKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGAAV-VI----RDDEEVFAKTEALLQDDMKLLQMKEAMKSLY 353 (380)
T ss_pred eCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCcEE-EE----CCHHHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 999988999999999999986 66677889999999999986 33 26799999999999 9999998888888877
Q ss_pred ccCcHHHHHHHHHHhcccc
Q 013835 390 KEDGVTGAVKAFFKHYSRS 408 (435)
Q Consensus 390 ~~~~~~~~~~~i~~~l~~~ 408 (435)
...+++++++.+++.+...
T Consensus 354 ~~~s~~~i~~~i~~~~~~~ 372 (380)
T PRK13609 354 LPEPADHIVDDILAENHVE 372 (380)
T ss_pred CCchHHHHHHHHHHhhhhh
Confidence 7788899999998877543
No 39
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.75 E-value=2.5e-19 Score=150.10 Aligned_cols=140 Identities=21% Similarity=0.308 Sum_probs=100.7
Q ss_pred cEEEeeCCCCCCChHHHHHHHHHHHHHh--CCeEEEEcCCCCCCCC----CCCCCceEEcCCCC-hhhhcccccEEEEeC
Q 013835 242 PIYIGFGSLPVQEPEKMTQIIVEAFEQT--GQRGIINKGWGGLGNL----AEPKDSIYLLDNIP-HDWLFLQCKAVVHHG 314 (435)
Q Consensus 242 ~v~v~~Gs~~~~~~~~~~~~~~~~~~~~--~~~~iv~~~~~~~~~~----~~~~~~v~~~~~~p-~~~~l~~~~l~I~hg 314 (435)
+|+|+.||........++..+...+... ..++++.+|....... ...+.++.+.+|.+ ..++++.||++||||
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~~~~~~~~~~~v~~~~~~~~m~~~m~~aDlvIs~a 80 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEELKIKVENFNPNVKVFGFVDNMAELMAAADLVISHA 80 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHHHCCCHCCTTCCCEEECSSSSHHHHHHHHSEEEECS
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHHHHHHHhccCCcEEEEechhhHHHHHHHcCEEEeCC
Confidence 4899999875321111112223333322 4788888886633221 22336899999999 677799999999999
Q ss_pred CchHHHHHHHhCCCEEeecCCC----ChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHH
Q 013835 315 GAGTTAAGLRAACPTTIVPFFG----DQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAV 382 (435)
Q Consensus 315 G~~s~~Eal~~G~P~l~~P~~~----dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~ 382 (435)
|.+|++|++++|+|+|++|... +|..|+..+++.|+|. .+...+.+.++|.++|.+++ ++..+..+.
T Consensus 81 G~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~-~~~~~~~~~~~L~~~i~~l~~~~~~~~~~~ 152 (167)
T PF04101_consen 81 GAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAI-MLDESELNPEELAEAIEELLSDPEKLKEMA 152 (167)
T ss_dssp -CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCC-CSECCC-SCCCHHHHHHCHCCCHH-SHHHC
T ss_pred CccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCcc-ccCcccCCHHHHHHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999888 9999999999999997 88888888999999999999 777655443
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.73 E-value=1.6e-16 Score=151.92 Aligned_cols=162 Identities=14% Similarity=0.055 Sum_probs=100.7
Q ss_pred CcEEEeeCCCCCCChHHHHHHHHHHHHHh-----CCeEEEEcCCCC-CCCCC----CC-CCceEEcCCCChhhhcccccE
Q 013835 241 KPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGG-LGNLA----EP-KDSIYLLDNIPHDWLFLQCKA 309 (435)
Q Consensus 241 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~-----~~~~iv~~~~~~-~~~~~----~~-~~~v~~~~~~p~~~~l~~~~l 309 (435)
++|++..||.... ....++.++++++.. +.++++.+++.. .+.+. +. .-++.+... ....+++.||+
T Consensus 187 ~~il~~~gsr~~~-~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~aDl 264 (380)
T PRK00025 187 RVLALLPGSRGQE-IKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLLDG-QKREAMAAADA 264 (380)
T ss_pred CEEEEECCCCHHH-HHHHHHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEEcc-cHHHHHHhCCE
Confidence 4566666664321 122344455554432 346676654222 12111 12 223444321 23445999999
Q ss_pred EEEeCCchHHHHHHHhCCCEEeecCCC--------ChhhH-----HHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CH
Q 013835 310 VVHHGGAGTTAAGLRAACPTTIVPFFG--------DQPFW-----GERVHARGVGPPPIPVDEFSLPKLINAINFML-DP 375 (435)
Q Consensus 310 ~I~hgG~~s~~Eal~~G~P~l~~P~~~--------dQ~~n-----a~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~ 375 (435)
+|+.+|.+++ ||+++|+|+|++|... +|..| +..+.+.+++. .+..++.+++++.+++.+++ |+
T Consensus 265 ~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~i~~ll~~~ 342 (380)
T PRK00025 265 ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVP-ELLQEEATPEKLARALLPLLADG 342 (380)
T ss_pred EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcch-hhcCCCCCHHHHHHHHHHHhcCH
Confidence 9999999877 9999999999985331 23333 34455555553 55566778999999999999 99
Q ss_pred HHHHHHHHHH----HHhhccCcHHHHHHHHHHhccc
Q 013835 376 KVKERAVELA----EAMEKEDGVTGAVKAFFKHYSR 407 (435)
Q Consensus 376 ~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~ 407 (435)
+.++++.+.. +.+ ..++++++++.|.+++..
T Consensus 343 ~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~~~ 377 (380)
T PRK00025 343 ARRQALLEGFTELHQQL-RCGADERAAQAVLELLKQ 377 (380)
T ss_pred HHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhhh
Confidence 8887666654 444 456788999998887643
No 41
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.70 E-value=8.5e-16 Score=146.72 Aligned_cols=162 Identities=12% Similarity=0.176 Sum_probs=123.3
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHHHH-HHh-CCeEEEEcCCCCC--CCCC---CCCCceEEcCCCCh-hhhcccccEE
Q 013835 239 GSKPIYIGFGSLPVQEPEKMTQIIVEAF-EQT-GQRGIINKGWGGL--GNLA---EPKDSIYLLDNIPH-DWLFLQCKAV 310 (435)
Q Consensus 239 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~-~~~-~~~~iv~~~~~~~--~~~~---~~~~~v~~~~~~p~-~~~l~~~~l~ 310 (435)
++++|+++.|++.... -++.+++++ +.. +.++++.+|.+.. +.+. ...+++.+.+|++. .++++.||++
T Consensus 201 ~~~~ilv~~G~lg~~k---~~~~li~~~~~~~~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~~aDl~ 277 (391)
T PRK13608 201 DKQTILMSAGAFGVSK---GFDTMITDILAKSANAQVVMICGKSKELKRSLTAKFKSNENVLILGYTKHMNEWMASSQLM 277 (391)
T ss_pred CCCEEEEECCCcccch---hHHHHHHHHHhcCCCceEEEEcCCCHHHHHHHHHHhccCCCeEEEeccchHHHHHHhhhEE
Confidence 3467888889886321 233344443 222 4577766664421 1221 12458999999854 3459999999
Q ss_pred EEeCCchHHHHHHHhCCCEEee-cCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 013835 311 VHHGGAGTTAAGLRAACPTTIV-PFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAEAM 388 (435)
Q Consensus 311 I~hgG~~s~~Eal~~G~P~l~~-P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~~~ 388 (435)
|+.+|..|+.||+++|+|+|++ |..++|..|+..+++.|+|+ ... +.+++.++|.+++ |++.++++++.+++.
T Consensus 278 I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~-~~~----~~~~l~~~i~~ll~~~~~~~~m~~~~~~~ 352 (391)
T PRK13608 278 ITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGK-IAD----TPEEAIKIVASLTNGNEQLTNMISTMEQD 352 (391)
T ss_pred EeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEE-EeC----CHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9998888999999999999998 77677889999999999996 433 6899999999999 999999999888888
Q ss_pred hccCcHHHHHHHHHHhcccc
Q 013835 389 EKEDGVTGAVKAFFKHYSRS 408 (435)
Q Consensus 389 ~~~~~~~~~~~~i~~~l~~~ 408 (435)
....+++++++.+++++...
T Consensus 353 ~~~~s~~~i~~~l~~l~~~~ 372 (391)
T PRK13608 353 KIKYATQTICRDLLDLIGHS 372 (391)
T ss_pred cCCCCHHHHHHHHHHHhhhh
Confidence 88889999999999888643
No 42
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.68 E-value=3.2e-14 Score=134.80 Aligned_cols=157 Identities=13% Similarity=0.135 Sum_probs=115.9
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHHHHHHh----CCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh---cccccEEE
Q 013835 239 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT----GQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL---FLQCKAVV 311 (435)
Q Consensus 239 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~----~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~---l~~~~l~I 311 (435)
.++.+++..|++..... ++.++++++.. +..+++++.+...+.+....+|+.+.++++++++ +.++|++|
T Consensus 195 ~~~~~i~~~G~~~~~k~---~~~~i~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l 271 (364)
T cd03814 195 PDRPVLLYVGRLAPEKN---LEALLDADLPLRRRPPVRLVIVGDGPARARLEARYPNVHFLGFLDGEELAAAYASADVFV 271 (364)
T ss_pred CCCeEEEEEeccccccC---HHHHHHHHHHhhhcCCceEEEEeCCchHHHHhccCCcEEEEeccCHHHHHHHHHhCCEEE
Confidence 34567788888754322 23344444443 4567766644433333345689999999998886 99999999
Q ss_pred EeCCc----hHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 013835 312 HHGGA----GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAE 386 (435)
Q Consensus 312 ~hgG~----~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~ 386 (435)
..+.. ++++||+++|+|+|+.+.. .+...+++.+.|. .++.. +.+++.++|.+++ |++.++++.+.++
T Consensus 272 ~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~~~~g~-~~~~~--~~~~l~~~i~~l~~~~~~~~~~~~~~~ 344 (364)
T cd03814 272 FPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTDGENGL-LVEPG--DAEAFAAALAALLADPELRRRMAARAR 344 (364)
T ss_pred ECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcCCcceE-EcCCC--CHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 87653 7899999999999977644 3567777778996 66544 6788999999999 9999888888888
Q ss_pred HhhccCcHHHHHHHHHHhc
Q 013835 387 AMEKEDGVTGAVKAFFKHY 405 (435)
Q Consensus 387 ~~~~~~~~~~~~~~i~~~l 405 (435)
+......++..++.+++++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~ 363 (364)
T cd03814 345 AEAERRSWEAFLDNLLEAY 363 (364)
T ss_pred HHHhhcCHHHHHHHHHHhh
Confidence 8776778898888888765
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.68 E-value=4.4e-15 Score=141.62 Aligned_cols=162 Identities=14% Similarity=0.117 Sum_probs=117.1
Q ss_pred CCcEEEeeCCCCCCChHHHHHHHHHHHH-----HhCCeEEEEcCCCC--CCCCCC--CCCceEEcCCCCh-hhhcccccE
Q 013835 240 SKPIYIGFGSLPVQEPEKMTQIIVEAFE-----QTGQRGIINKGWGG--LGNLAE--PKDSIYLLDNIPH-DWLFLQCKA 309 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~-----~~~~~~iv~~~~~~--~~~~~~--~~~~v~~~~~~p~-~~~l~~~~l 309 (435)
+++|++..|+........+++.+.+.+. ..+.++++.+|.+. .+.+.+ ...++.+.+|+++ .++++.+|+
T Consensus 206 ~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~~~~~~l~~aaDv 285 (382)
T PLN02605 206 LPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNKKLQSKLESRDWKIPVKVRGFVTNMEEWMGACDC 285 (382)
T ss_pred CcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCHHHHHHHHhhcccCCeEEEeccccHHHHHHhCCE
Confidence 3566666555543333444443332221 12345566666442 112222 2357899999975 344999999
Q ss_pred EEEeCCchHHHHHHHhCCCEEeecCCCCh-hhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-C-HHHHHHHHHHHH
Q 013835 310 VVHHGGAGTTAAGLRAACPTTIVPFFGDQ-PFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-D-PKVKERAVELAE 386 (435)
Q Consensus 310 ~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ-~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~-~~~~~~~~~~~~ 386 (435)
+|+.+|.+|+.||+++|+|+|+.+....| ..|+..+.+.|.|+ .+ .+++++.++|.+++ | ++.++++++.++
T Consensus 286 ~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g~-~~----~~~~~la~~i~~ll~~~~~~~~~m~~~~~ 360 (382)
T PLN02605 286 IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFGA-FS----ESPKEIARIVAEWFGDKSDELEAMSENAL 360 (382)
T ss_pred EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCcee-ec----CCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999755445 47999999999996 44 27899999999999 7 999999999999
Q ss_pred HhhccCcHHHHHHHHHHhcc
Q 013835 387 AMEKEDGVTGAVKAFFKHYS 406 (435)
Q Consensus 387 ~~~~~~~~~~~~~~i~~~l~ 406 (435)
+....++++++++.+.+++.
T Consensus 361 ~~~~~~a~~~i~~~l~~~~~ 380 (382)
T PLN02605 361 KLARPEAVFDIVHDLHELVR 380 (382)
T ss_pred HhcCCchHHHHHHHHHHHhh
Confidence 98888899999998887653
No 44
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.62 E-value=5.4e-14 Score=133.63 Aligned_cols=161 Identities=17% Similarity=0.111 Sum_probs=109.9
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHHHHHHh----CCeEEEEc-CCCCCCCCC----C--C--------------CCceE
Q 013835 239 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT----GQRGIINK-GWGGLGNLA----E--P--------------KDSIY 293 (435)
Q Consensus 239 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~----~~~~iv~~-~~~~~~~~~----~--~--------------~~~v~ 293 (435)
+.++|.+-.||-.... ...+..++++++.. +..+++.+ +..+.+.+. + . ..++.
T Consensus 204 ~~~~lllLpGSR~ae~-~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 282 (396)
T TIGR03492 204 GRFRIALLPGSRPPEA-YRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLE 282 (396)
T ss_pred CCCEEEEECCCCHHHH-HccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceE
Confidence 4468888888863211 12234555665554 56677666 332222211 1 1 01355
Q ss_pred EcCCC-ChhhhcccccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHc----CCCCCCCCCCCCCHHHHHHH
Q 013835 294 LLDNI-PHDWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHAR----GVGPPPIPVDEFSLPKLINA 368 (435)
Q Consensus 294 ~~~~~-p~~~~l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~----g~G~~~l~~~~~~~~~l~~~ 368 (435)
+..+. ...++++.||++|+.+|..| .|++++|+|+|++|....|. |+...++. |.++ .+.. .+.+.+.++
T Consensus 283 v~~~~~~~~~~l~~ADlvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~-~l~~--~~~~~l~~~ 357 (396)
T TIGR03492 283 VLLGRGAFAEILHWADLGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSV-FLAS--KNPEQAAQV 357 (396)
T ss_pred EEechHhHHHHHHhCCEEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEE-ecCC--CCHHHHHHH
Confidence 54544 34556999999999999877 99999999999999878887 99888874 6564 4443 356999999
Q ss_pred HHHhc-CHHHHHHHH-HHHHHhhccCcHHHHHHHHHHhc
Q 013835 369 INFML-DPKVKERAV-ELAEAMEKEDGVTGAVKAFFKHY 405 (435)
Q Consensus 369 i~~ll-~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l 405 (435)
+.+++ |++.++++. +..+++.+.++.+++++.|.+++
T Consensus 358 l~~ll~d~~~~~~~~~~~~~~lg~~~a~~~ia~~i~~~~ 396 (396)
T TIGR03492 358 VRQLLADPELLERCRRNGQERMGPPGASARIAESILKQL 396 (396)
T ss_pred HHHHHcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhC
Confidence 99999 988887776 45556666678889999887653
No 45
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.61 E-value=4.4e-14 Score=120.71 Aligned_cols=285 Identities=16% Similarity=0.120 Sum_probs=179.0
Q ss_pred CccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHh--cCceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHHHhhc
Q 013835 6 TRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLT--AGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLLPAC 83 (435)
Q Consensus 6 ~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~--~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (435)
|.||+++++.||++|.++|..++|++.++..+.+.. .++.+....
T Consensus 14 GmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~~~f~~~~~~--------------------------------- 60 (318)
T COG3980 14 GMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVYEGFKVLEGR--------------------------------- 60 (318)
T ss_pred CcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhhhhccceeee---------------------------------
Confidence 789999999999999999999999998765442211 111111000
Q ss_pred cCCCccCCcccCcCEEEeCCcchhH---HHHHHHcCCCEEEeeccCCCCCCCCCCCCcccCCCccchHHHHHHHHHHHHH
Q 013835 84 RDPDLDSGIAFKADAIIANPPAYGH---VHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQIVDSLIWLG 160 (435)
Q Consensus 84 ~~~~~~~~~~~~pDlVi~d~~~~~~---~~~A~~~~iP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (435)
....+++.++|++|.|.....+ .......+.+.+++-.... .+ +..
T Consensus 61 ---~~n~ik~~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~---------~~-----------~~d-------- 109 (318)
T COG3980 61 ---GNNLIKEEKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENA---------KS-----------FKD-------- 109 (318)
T ss_pred ---cccccccccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCc---------cc-----------hhh--------
Confidence 0013556699999999877653 4567778899998743111 00 000
Q ss_pred HhHHHHHHHHh--ccCCCCCCCCCCCCCCCCCCCeeEeeCCCCcCCCCCCCCCC-eeeecccccCCCCCCCchHHHHH-H
Q 013835 161 IRDMINDVRKK--KLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKV-DVVGFCFLDLASNYEPPESLVKW-L 236 (435)
Q Consensus 161 ~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vG~~~~~~~~~~~~~~~l~~~-~ 236 (435)
....+|..+.. .++ ..+.+. .+.||-+....+++- .+++- +
T Consensus 110 ~d~ivN~~~~a~~~y~--------------------------------~v~~k~~~~lGp~y~~lr~eF~---~~r~~~~ 154 (318)
T COG3980 110 NDLIVNAILNANDYYG--------------------------------LVPNKTRYYLGPGYAPLRPEFY---ALREENT 154 (318)
T ss_pred hHhhhhhhhcchhhcc--------------------------------ccCcceEEEecCCceeccHHHH---HhHHHHh
Confidence 11112222110 011 112222 345654332221110 11111 1
Q ss_pred HcCCCcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCC------CCCCceEEcCCCC-hhhhcccccE
Q 013835 237 EAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLA------EPKDSIYLLDNIP-HDWLFLQCKA 309 (435)
Q Consensus 237 ~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~------~~~~~v~~~~~~p-~~~~l~~~~l 309 (435)
.+..+-|+|++|... +..+.-.++..+.+.+..+-+++|..+ ..+. +..+|+.+..... +..+|..||+
T Consensus 155 ~r~~r~ilI~lGGsD---pk~lt~kvl~~L~~~~~nl~iV~gs~~-p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~ 230 (318)
T COG3980 155 ERPKRDILITLGGSD---PKNLTLKVLAELEQKNVNLHIVVGSSN-PTLKNLRKRAEKYPNINLYIDTNDMAELMKEADL 230 (318)
T ss_pred hcchheEEEEccCCC---hhhhHHHHHHHhhccCeeEEEEecCCC-cchhHHHHHHhhCCCeeeEecchhHHHHHHhcch
Confidence 222347999999764 555666677888777777777776332 1222 2345676666654 5567999999
Q ss_pred EEEeCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 013835 310 VVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAEAM 388 (435)
Q Consensus 310 ~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~~~ 388 (435)
.|+.+|. |++||+..|+|.+++|....|...|...+.+|+-. .+..- ++...+...+.++. |...|.+.-...+..
T Consensus 231 aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg~~~-~l~~~-l~~~~~~~~~~~i~~d~~~rk~l~~~~~~i 307 (318)
T COG3980 231 AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEALGIIK-QLGYH-LKDLAKDYEILQIQKDYARRKNLSFGSKLI 307 (318)
T ss_pred heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhcCchh-hccCC-CchHHHHHHHHHhhhCHHHhhhhhhcccee
Confidence 9999999 99999999999999999999999999999999875 55432 56677777888888 888888876655554
Q ss_pred hccCcHHH
Q 013835 389 EKEDGVTG 396 (435)
Q Consensus 389 ~~~~~~~~ 396 (435)
-+.-|..+
T Consensus 308 ~dg~g~~r 315 (318)
T COG3980 308 GDGRGFLR 315 (318)
T ss_pred ecccccee
Confidence 44334333
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.55 E-value=1.5e-12 Score=127.58 Aligned_cols=153 Identities=14% Similarity=0.121 Sum_probs=109.9
Q ss_pred CcEEEeeCCCCCCChHHHHHHHHHHHHHh-CCeEEEEcCCCCCCCCCC--CCCceEEcCCCChhhh---cccccEEEEeC
Q 013835 241 KPIYIGFGSLPVQEPEKMTQIIVEAFEQT-GQRGIINKGWGGLGNLAE--PKDSIYLLDNIPHDWL---FLQCKAVVHHG 314 (435)
Q Consensus 241 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~-~~~~iv~~~~~~~~~~~~--~~~~v~~~~~~p~~~~---l~~~~l~I~hg 314 (435)
+.+++..|++.. ++.++.++++++.. +.++++++.+...+.+.+ ...+|.+.++++.+++ ++.+|++|...
T Consensus 263 ~~~i~~vGrl~~---~K~~~~li~a~~~~~~~~l~ivG~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv~V~pS 339 (465)
T PLN02871 263 KPLIVYVGRLGA---EKNLDFLKRVMERLPGARLAFVGDGPYREELEKMFAGTPTVFTGMLQGDELSQAYASGDVFVMPS 339 (465)
T ss_pred CeEEEEeCCCch---hhhHHHHHHHHHhCCCcEEEEEeCChHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCEEEECC
Confidence 456677788753 34556677777765 567776664433222222 1358999999998776 99999999765
Q ss_pred C----chHHHHHHHhCCCEEeecCCCChhhHHHHHHH---cCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 013835 315 G----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHA---RGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAE 386 (435)
Q Consensus 315 G----~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~---~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~ 386 (435)
. .++++||+++|+|+|+.... ...+.+++ .+.|+ .++.. +.++++++|.+++ |++.++++.+.++
T Consensus 340 ~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~~~G~-lv~~~--d~~~la~~i~~ll~~~~~~~~~~~~a~ 412 (465)
T PLN02871 340 ESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEGKTGF-LYTPG--DVDDCVEKLETLLADPELRERMGAAAR 412 (465)
T ss_pred cccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCCCceE-EeCCC--CHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 4 35799999999999976543 34556666 67886 66544 6899999999999 9998888888777
Q ss_pred HhhccCcHHHHHHHHHH
Q 013835 387 AMEKEDGVTGAVKAFFK 403 (435)
Q Consensus 387 ~~~~~~~~~~~~~~i~~ 403 (435)
+..+.-.++..++.+.+
T Consensus 413 ~~~~~fsw~~~a~~l~~ 429 (465)
T PLN02871 413 EEVEKWDWRAATRKLRN 429 (465)
T ss_pred HHHHhCCHHHHHHHHHH
Confidence 76665577766666654
No 47
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.55 E-value=6.1e-15 Score=119.65 Aligned_cols=130 Identities=33% Similarity=0.416 Sum_probs=86.0
Q ss_pred CcccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHhcCceeEEccccccCCC---CCCCCCchhhHHHHHHHHHH
Q 013835 1 MLIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLDMVKNKGF---LPSGPSEIPVQRNQMKEIIY 77 (435)
Q Consensus 1 ~~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 77 (435)
|++.|+.||++|+++||++|++|||+|++++++.+.+.++..|++|++++....... ..............+.....
T Consensus 3 i~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (139)
T PF03033_consen 3 IATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAAGLEFVPIPGDSRLPRSLEPLANLRRLARLIRGLEEAMR 82 (139)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHTT-EEEESSSCGGGGHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred EEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccccCceEEEecCCcCcCcccchhhhhhhHHHHhhhhhHHHH
Confidence 578999999999999999999999999999999999999999999999973200000 00000001111111222223
Q ss_pred HHHhhccCCCccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCC
Q 013835 78 SLLPACRDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPT 130 (435)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~ 130 (435)
.+.....+.+........+|+++.+.....+..+|++++||.+.....|..++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~~~ 135 (139)
T PF03033_consen 83 ILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWFAT 135 (139)
T ss_dssp HHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGGST
T ss_pred HhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcCcC
Confidence 33333334444444455788888888888888999999999999877665543
No 48
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.52 E-value=4.3e-12 Score=121.15 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=103.4
Q ss_pred CCCcEEEeeCCCCCCCh-HHHHHHHHHHHHHh-CCeEEEEcCCCCCCCCC-----CCCCceEEcCCCChhhh---ccccc
Q 013835 239 GSKPIYIGFGSLPVQEP-EKMTQIIVEAFEQT-GQRGIINKGWGGLGNLA-----EPKDSIYLLDNIPHDWL---FLQCK 308 (435)
Q Consensus 239 ~~~~v~v~~Gs~~~~~~-~~~~~~~~~~~~~~-~~~~iv~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~---l~~~~ 308 (435)
.++.+++..|+...... +.+++ +++.+.+. +.++++.+.+...+.+. ...+|+.+.++++.+++ +.++|
T Consensus 218 ~~~~~i~~~G~~~~~k~~~~l~~-~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d 296 (394)
T cd03794 218 DDKFVVLYAGNIGRAQGLDTLLE-AAALLKDRPDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAAD 296 (394)
T ss_pred CCcEEEEEecCcccccCHHHHHH-HHHHHhhcCCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhC
Confidence 34577888888754332 33333 22333333 55666665433322221 23478999999988776 89999
Q ss_pred EEEEeCC---------chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHH
Q 013835 309 AVVHHGG---------AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVK 378 (435)
Q Consensus 309 l~I~hgG---------~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~ 378 (435)
++|.... .+++.||+++|+|+|+.+..+. ...+.+.+.|. .++.. +.++++++|.+++ |++.+
T Consensus 297 i~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~----~~~~~~~~~g~-~~~~~--~~~~l~~~i~~~~~~~~~~ 369 (394)
T cd03794 297 VGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGES----AELVEEAGAGL-VVPPG--DPEALAAAILELLDDPEER 369 (394)
T ss_pred eeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCc----hhhhccCCcce-EeCCC--CHHHHHHHHHHHHhChHHH
Confidence 9996543 3458999999999998776553 34555557775 55544 6899999999999 99888
Q ss_pred HHHHHHHHHhhc-cCcHHHHHHHH
Q 013835 379 ERAVELAEAMEK-EDGVTGAVKAF 401 (435)
Q Consensus 379 ~~~~~~~~~~~~-~~~~~~~~~~i 401 (435)
+++.+.+++... ..+++..++.+
T Consensus 370 ~~~~~~~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 370 AEMGENGRRYVEEKFSREKLAERL 393 (394)
T ss_pred HHHHHHHHHHHHHhhcHHHHHHhc
Confidence 888777766655 45666666543
No 49
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.50 E-value=1e-12 Score=124.20 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=103.7
Q ss_pred CCcEEEeeCCCCCCChHHHHHHHHHHHHHh---CCeEEEEcCCCCCCCCC---CCCCceEEcCCCChhhh---cccccEE
Q 013835 240 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT---GQRGIINKGWGGLGNLA---EPKDSIYLLDNIPHDWL---FLQCKAV 310 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~---~~~~iv~~~~~~~~~~~---~~~~~v~~~~~~p~~~~---l~~~~l~ 310 (435)
++.+++..|+...... ++.+++++... +.++++.+.+....... ...+++.+.++++.+++ ++++|++
T Consensus 190 ~~~~i~~~G~~~~~k~---~~~li~~~~~l~~~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~ 266 (359)
T cd03823 190 GRLRFGFIGQLTPHKG---VDLLLEAFKRLPRGDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDVL 266 (359)
T ss_pred CceEEEEEecCccccC---HHHHHHHHHHHHhcCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCEE
Confidence 4567778888754322 23344444443 56777665443322111 23579999999988877 8999999
Q ss_pred EEeC-----CchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHH
Q 013835 311 VHHG-----GAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVEL 384 (435)
Q Consensus 311 I~hg-----G~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~ 384 (435)
|..+ ...++.||+++|+|+|+.+. ..+...+++.+.|. .++.. +.+++++++.+++ |+..++.+.+.
T Consensus 267 i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~~~g~-~~~~~--d~~~l~~~i~~l~~~~~~~~~~~~~ 339 (359)
T cd03823 267 VVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDGVNGL-LFPPG--DAEDLAAALERLIDDPDLLERLRAG 339 (359)
T ss_pred EEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCCCcEE-EECCC--CHHHHHHHHHHHHhChHHHHHHHHh
Confidence 9532 33689999999999997553 44667787777886 66544 5899999999999 88887777766
Q ss_pred HHHhhccCcHHHHHHHHHHhc
Q 013835 385 AEAMEKEDGVTGAVKAFFKHY 405 (435)
Q Consensus 385 ~~~~~~~~~~~~~~~~i~~~l 405 (435)
+++.... +..++.+++.+
T Consensus 340 ~~~~~~~---~~~~~~~~~~~ 357 (359)
T cd03823 340 IEPPRSI---EDQAEEYLKLY 357 (359)
T ss_pred HHHhhhH---HHHHHHHHHHh
Confidence 5554433 55666666554
No 50
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.50 E-value=1.6e-11 Score=118.20 Aligned_cols=154 Identities=13% Similarity=0.086 Sum_probs=106.0
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHHHHHHh-----CCeEEEEcCCCCCCC------------CCCCCCceEEcCCCChh
Q 013835 239 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGLGN------------LAEPKDSIYLLDNIPHD 301 (435)
Q Consensus 239 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~-----~~~~iv~~~~~~~~~------------~~~~~~~v~~~~~~p~~ 301 (435)
.++.+++..|++..... ++.+++++... +.++++++++..... ......++.+.+++|+.
T Consensus 218 ~~~~~i~~~gr~~~~k~---~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~ 294 (398)
T cd03800 218 PDKPRILAVGRLDPRKG---IDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSRE 294 (398)
T ss_pred CCCcEEEEEcccccccC---HHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHH
Confidence 34577788888754222 23344444432 456777765432110 01234789999999998
Q ss_pred hh---cccccEEEEeCC----chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-
Q 013835 302 WL---FLQCKAVVHHGG----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML- 373 (435)
Q Consensus 302 ~~---l~~~~l~I~hgG----~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll- 373 (435)
++ ++.+|+++..+- ..++.||+++|+|+|+... ....+.+++.+.|+ .++.. +.++++++|.+++
T Consensus 295 ~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~----~~~~e~i~~~~~g~-~~~~~--~~~~l~~~i~~l~~ 367 (398)
T cd03800 295 DLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAV----GGPRDIVVDGVTGL-LVDPR--DPEALAAALRRLLT 367 (398)
T ss_pred HHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCC----CCHHHHccCCCCeE-EeCCC--CHHHHHHHHHHHHh
Confidence 87 899999996543 3689999999999996654 34667788778896 66544 6899999999999
Q ss_pred CHHHHHHHHHHHHHhh-ccCcHHHHHHHHH
Q 013835 374 DPKVKERAVELAEAME-KEDGVTGAVKAFF 402 (435)
Q Consensus 374 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~ 402 (435)
|++.++.+.+.+++.. +.-.++..++.++
T Consensus 368 ~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 368 DPALRRRLSRAGLRRARARYTWERVAARLL 397 (398)
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 8888777776666654 4457776666553
No 51
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.48 E-value=2.5e-11 Score=117.15 Aligned_cols=161 Identities=15% Similarity=0.161 Sum_probs=109.8
Q ss_pred CCcEEEeeCCCCCCC-hHHHHHHHHHHHHHhC---CeEEEEcCCCCCC-----CC------CCCCCceEEcCCCChhhh-
Q 013835 240 SKPIYIGFGSLPVQE-PEKMTQIIVEAFEQTG---QRGIINKGWGGLG-----NL------AEPKDSIYLLDNIPHDWL- 303 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~-~~~~~~~~~~~~~~~~---~~~iv~~~~~~~~-----~~------~~~~~~v~~~~~~p~~~~- 303 (435)
++.+++..|++.... .+.+++.+....++.+ .+++++++..+.. .+ ..+.++|.+.++++.+++
T Consensus 218 ~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~ 297 (405)
T TIGR03449 218 DTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELV 297 (405)
T ss_pred CCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHH
Confidence 357778889885432 3334443322222222 5566665422111 11 124578999999998776
Q ss_pred --cccccEEEEeC---C-chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHH
Q 013835 304 --FLQCKAVVHHG---G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPK 376 (435)
Q Consensus 304 --l~~~~l~I~hg---G-~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~ 376 (435)
++.+|++|... | ..++.||+++|+|+|+.... .....+++.+.|+ .++.. +.++++++|.+++ |++
T Consensus 298 ~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~~~g~-~~~~~--d~~~la~~i~~~l~~~~ 370 (405)
T TIGR03449 298 HVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADGETGL-LVDGH--DPADWADALARLLDDPR 370 (405)
T ss_pred HHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccCCceE-ECCCC--CHHHHHHHHHHHHhCHH
Confidence 99999998542 2 36899999999999976543 3456677777886 66544 6899999999999 988
Q ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHhccc
Q 013835 377 VKERAVELAEAMEKEDGVTGAVKAFFKHYSR 407 (435)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 407 (435)
.++++.+.+++..+.-.++..++.+++++..
T Consensus 371 ~~~~~~~~~~~~~~~fsw~~~~~~~~~~y~~ 401 (405)
T TIGR03449 371 TRIRMGAAAVEHAAGFSWAATADGLLSSYRD 401 (405)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 8888877777766556888888888777653
No 52
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.47 E-value=2.3e-11 Score=116.93 Aligned_cols=105 Identities=15% Similarity=0.097 Sum_probs=80.4
Q ss_pred CCceEEcCCCChhhh---cccccEEEEeC---C-chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCC
Q 013835 289 KDSIYLLDNIPHDWL---FLQCKAVVHHG---G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFS 361 (435)
Q Consensus 289 ~~~v~~~~~~p~~~~---l~~~~l~I~hg---G-~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~ 361 (435)
.++|.+.+++|+.++ +..+|++|.-. | .+++.||+++|+|+|+. |.......++....|+ .++.. +
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas----~~~g~~e~i~~~~~G~-lv~~~--d 352 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGS----DTAPVREVITDGENGL-LVDFF--D 352 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEc----CCCCchhhcccCCceE-EcCCC--C
Confidence 478999999999886 89999998533 2 25899999999999964 4445667777777886 66554 6
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhhcc-CcHHHHHHH
Q 013835 362 LPKLINAINFML-DPKVKERAVELAEAMEKE-DGVTGAVKA 400 (435)
Q Consensus 362 ~~~l~~~i~~ll-~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 400 (435)
+++++++|.+++ |++.++++.+.+++.... -.++..++.
T Consensus 353 ~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~~~~~~ 393 (396)
T cd03818 353 PDALAAAVIELLDDPARRARLRRAARRTALRYDLLSVCLPR 393 (396)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 899999999999 998888887777665543 456655544
No 53
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.47 E-value=4.4e-11 Score=115.37 Aligned_cols=145 Identities=11% Similarity=-0.016 Sum_probs=95.8
Q ss_pred CCcEEEeeCCCCCCChHHHHHHHHHHHHHh-----------CCeEEEEcCCCCCCCCC----CC-CCceEEc-CCCChhh
Q 013835 240 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----------GQRGIINKGWGGLGNLA----EP-KDSIYLL-DNIPHDW 302 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~-----------~~~~iv~~~~~~~~~~~----~~-~~~v~~~-~~~p~~~ 302 (435)
++.++++.|.+..... ++.++++++.. +.++++++.+...+.+. +. .+++.+. +|+|.++
T Consensus 231 ~~~vi~~~grl~~~K~---~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~ 307 (415)
T cd03816 231 RPALLVSSTSWTPDED---FGILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAED 307 (415)
T ss_pred CceEEEEeccccCCCC---HHHHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHH
Confidence 3466777788754332 23344444432 25666665443322221 11 2466654 6898888
Q ss_pred h---cccccEEEEe----CC---chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHh
Q 013835 303 L---FLQCKAVVHH----GG---AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFM 372 (435)
Q Consensus 303 ~---l~~~~l~I~h----gG---~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~l 372 (435)
+ +..+|+++.. -| .+++.||+++|+|+|+.. .....+.+++.+.|+ .++ +.++++++|.++
T Consensus 308 ~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~----~~~~~eiv~~~~~G~-lv~----d~~~la~~i~~l 378 (415)
T cd03816 308 YPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALD----FKCIDELVKHGENGL-VFG----DSEELAEQLIDL 378 (415)
T ss_pred HHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeC----CCCHHHHhcCCCCEE-EEC----CHHHHHHHHHHH
Confidence 7 8999999841 12 468999999999999654 335678888888996 652 689999999999
Q ss_pred c-C---HHHHHHHHHHHHHhhccCcHHHH
Q 013835 373 L-D---PKVKERAVELAEAMEKEDGVTGA 397 (435)
Q Consensus 373 l-~---~~~~~~~~~~~~~~~~~~~~~~~ 397 (435)
+ | ++.++++.+.++++.. ......
T Consensus 379 l~~~~~~~~~~~m~~~~~~~~~-~~~~~~ 406 (415)
T cd03816 379 LSNFPNRGKLNSLKKGAQEESE-LRWDEN 406 (415)
T ss_pred HhcCCCHHHHHHHHHHHHHhhh-cCHHHH
Confidence 9 8 8888888877777653 344433
No 54
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.44 E-value=4.4e-12 Score=120.51 Aligned_cols=151 Identities=11% Similarity=0.098 Sum_probs=95.9
Q ss_pred CCcEEEeeCCCCCCChHHHHHHHHHHHHHhC---CeEEEEcCCCCCCCCC----CC---CCceEEcCCCChhhh---ccc
Q 013835 240 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTG---QRGIINKGWGGLGNLA----EP---KDSIYLLDNIPHDWL---FLQ 306 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~---~~~iv~~~~~~~~~~~----~~---~~~v~~~~~~p~~~~---l~~ 306 (435)
++.|+++.|+.......+-++.++++++... ..+++...+.....+. +. .+++.+.+.....++ +..
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 277 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKN 277 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHc
Confidence 4577788887654323445566777777653 3333322221112221 11 468988887766554 888
Q ss_pred ccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHH
Q 013835 307 CKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELA 385 (435)
Q Consensus 307 ~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~ 385 (435)
||++|+.+| +.+.||+++|+|+|+++...+ +..+.+.|+++ .+. + +.+++.+++.+++ ++..+.+++ .
T Consensus 278 ad~~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~~g~~~-~~~--~-~~~~i~~~i~~ll~~~~~~~~~~--~ 346 (363)
T cd03786 278 ADLVLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVESGTNV-LVG--T-DPEAILAAIEKLLSDEFAYSLMS--I 346 (363)
T ss_pred CcEEEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhheeeEE-ecC--C-CHHHHHHHHHHHhcCchhhhcCC--C
Confidence 999999999 788899999999999874322 34455567774 332 2 5799999999999 776666653 3
Q ss_pred HHhhccCcHHHHHHHH
Q 013835 386 EAMEKEDGVTGAVKAF 401 (435)
Q Consensus 386 ~~~~~~~~~~~~~~~i 401 (435)
..+.+.+.++++++.+
T Consensus 347 ~~~~~~~a~~~I~~~l 362 (363)
T cd03786 347 NPYGDGNASERIVEIL 362 (363)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 3333334555666544
No 55
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.42 E-value=6.8e-11 Score=112.36 Aligned_cols=153 Identities=10% Similarity=0.108 Sum_probs=100.9
Q ss_pred CcEEEeeCCCCCCChHHHHHHHHHHHHHh-----CCeEEEEcCCCCCC--CC---CCCCCceEEcCCCChhhh---cccc
Q 013835 241 KPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGLG--NL---AEPKDSIYLLDNIPHDWL---FLQC 307 (435)
Q Consensus 241 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~-----~~~~iv~~~~~~~~--~~---~~~~~~v~~~~~~p~~~~---l~~~ 307 (435)
+.++++.+.... ..+-++.++++++.. +.++++..+++... .+ ....+++.+.+.++..+. ++.+
T Consensus 198 ~~vl~~~hr~~~--~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~a 275 (365)
T TIGR00236 198 RYILLTLHRREN--VGEPLENIFKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANS 275 (365)
T ss_pred CEEEEecCchhh--hhhHHHHHHHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhC
Confidence 455565544321 112345566666553 45666654432210 01 123468999988877655 8999
Q ss_pred cEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 013835 308 KAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAE 386 (435)
Q Consensus 308 ~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~ 386 (435)
|++|+.+|. .+.||+++|+|+|.++..+++.. +.+.|.++ .+. .+++++.+++.+++ |++.++++.+..+
T Consensus 276 d~vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~~~g~~~-lv~---~d~~~i~~ai~~ll~~~~~~~~~~~~~~ 346 (365)
T TIGR00236 276 HLILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TVEAGTNK-LVG---TDKENITKAAKRLLTDPDEYKKMSNASN 346 (365)
T ss_pred CEEEECChh-HHHHHHHcCCCEEECCCCCCChH----HHhcCceE-EeC---CCHHHHHHHHHHHHhChHHHHHhhhcCC
Confidence 999998876 47999999999999876555442 23367774 442 27899999999999 9988888776555
Q ss_pred HhhccCcHHHHHHHHHHh
Q 013835 387 AMEKEDGVTGAVKAFFKH 404 (435)
Q Consensus 387 ~~~~~~~~~~~~~~i~~~ 404 (435)
.+.+.+.++++++.+++.
T Consensus 347 ~~g~~~a~~ri~~~l~~~ 364 (365)
T TIGR00236 347 PYGDGEASERIVEELLNH 364 (365)
T ss_pred CCcCchHHHHHHHHHHhh
Confidence 555545667888877653
No 56
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.41 E-value=9.1e-11 Score=110.85 Aligned_cols=156 Identities=19% Similarity=0.180 Sum_probs=107.9
Q ss_pred CCcEEEeeCCCCCCChHHHHHHHHHHHHHh-----CCeEEEEcCCCCCCCC------CCCCCceEEcCCCChhhh---cc
Q 013835 240 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGLGNL------AEPKDSIYLLDNIPHDWL---FL 305 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~-----~~~~iv~~~~~~~~~~------~~~~~~v~~~~~~p~~~~---l~ 305 (435)
++.+++..|+..... -++.+++++... +.++++.+++.....+ ...++++.+.++++.+++ +.
T Consensus 198 ~~~~i~~~g~~~~~k---~~~~~i~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 274 (374)
T cd03801 198 DEPVILFVGRLVPRK---GVDLLLEALAKLRKEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYA 274 (374)
T ss_pred CCeEEEEecchhhhc---CHHHHHHHHHHHhhhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHH
Confidence 346778888875322 223344444332 3566666533222211 135689999999987776 89
Q ss_pred cccEEEEe----CCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHH
Q 013835 306 QCKAVVHH----GGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKER 380 (435)
Q Consensus 306 ~~~l~I~h----gG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~ 380 (435)
++|++|.. |..+++.||+++|+|+|+.+. ..+...+++.+.|+ .++.. +.+++.++|.+++ |++.++.
T Consensus 275 ~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~~~g~-~~~~~--~~~~l~~~i~~~~~~~~~~~~ 347 (374)
T cd03801 275 AADVFVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDGETGL-LVPPG--DPEALAEAILRLLDDPELRRR 347 (374)
T ss_pred hcCEEEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCCcceE-EeCCC--CHHHHHHHHHHHHcChHHHHH
Confidence 99999954 445799999999999997654 44667777777886 55543 5899999999999 8887777
Q ss_pred HHHHHH-HhhccCcHHHHHHHHHHhc
Q 013835 381 AVELAE-AMEKEDGVTGAVKAFFKHY 405 (435)
Q Consensus 381 ~~~~~~-~~~~~~~~~~~~~~i~~~l 405 (435)
+.+.++ ...+...++..++.+.+++
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (374)
T cd03801 348 LGEAARERVAERFSWDRVAARTEEVY 373 (374)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 766665 4556678888888877765
No 57
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.41 E-value=1.3e-10 Score=109.44 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=103.0
Q ss_pred CCCcEEEeeCCCCCCCh-HHHHHHHHHHHHH--hCCeEEEEcCCCCCCCCC-------CCCCceEEcCCCCh-hhhcccc
Q 013835 239 GSKPIYIGFGSLPVQEP-EKMTQIIVEAFEQ--TGQRGIINKGWGGLGNLA-------EPKDSIYLLDNIPH-DWLFLQC 307 (435)
Q Consensus 239 ~~~~v~v~~Gs~~~~~~-~~~~~~~~~~~~~--~~~~~iv~~~~~~~~~~~-------~~~~~v~~~~~~p~-~~~l~~~ 307 (435)
.++.+++..|++..... +.+++ +++.+.+ .+.++++.++........ ....++.+.++... ..++.++
T Consensus 186 ~~~~~i~~~G~~~~~k~~~~li~-~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~a 264 (359)
T cd03808 186 EDDPVFLFVARLLKDKGIDELLE-AARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAA 264 (359)
T ss_pred CCCcEEEEEeccccccCHHHHHH-HHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhc
Confidence 34578888898754332 33333 2333332 245666665544322211 13568998887432 3349999
Q ss_pred cEEEEeCC----chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHH
Q 013835 308 KAVVHHGG----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAV 382 (435)
Q Consensus 308 ~l~I~hgG----~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~ 382 (435)
|++|..+. .+++.||+++|+|+|+.+..+ +...+++.+.|. .++.+ +.+++.++|.+++ |++.++.+.
T Consensus 265 di~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i~~~~~g~-~~~~~--~~~~~~~~i~~l~~~~~~~~~~~ 337 (359)
T cd03808 265 DVFVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAVIDGVNGF-LVPPG--DAEALADAIERLIEDPELRARMG 337 (359)
T ss_pred cEEEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhhhcCcceE-EECCC--CHHHHHHHHHHHHhCHHHHHHHH
Confidence 99997654 479999999999999765443 456777677886 66544 6899999999999 988888777
Q ss_pred HHHHHh-hccCcHHHHHHHHH
Q 013835 383 ELAEAM-EKEDGVTGAVKAFF 402 (435)
Q Consensus 383 ~~~~~~-~~~~~~~~~~~~i~ 402 (435)
+.+++. .+.-+.+..++.++
T Consensus 338 ~~~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 338 QAARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred HHHHHHHHHhcCHHHHHHHhh
Confidence 766665 45567777766554
No 58
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.40 E-value=3.2e-10 Score=107.27 Aligned_cols=142 Identities=15% Similarity=0.128 Sum_probs=92.1
Q ss_pred CCcEEEeeCCCCCCCh-HHHHHHHHHHHHH--hCCeEEEEcCCCCCCCCC----------CCCCceEEcCCCCh-hhhcc
Q 013835 240 SKPIYIGFGSLPVQEP-EKMTQIIVEAFEQ--TGQRGIINKGWGGLGNLA----------EPKDSIYLLDNIPH-DWLFL 305 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~-~~~~~~~~~~~~~--~~~~~iv~~~~~~~~~~~----------~~~~~v~~~~~~p~-~~~l~ 305 (435)
++.+++..|++..... +.+++ ++..+.+ .+.++++++.+...+... ...++|.+.++.+. ..++.
T Consensus 184 ~~~~i~~~Gr~~~~Kg~~~li~-~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~ 262 (355)
T cd03819 184 GKPVILLPGRLTRWKGQEVFIE-ALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYA 262 (355)
T ss_pred CceEEEEeeccccccCHHHHHH-HHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHH
Confidence 3467788888754333 33333 3344443 245666665443322221 34578999999432 22389
Q ss_pred cccEEEEeC----C-chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc--CHHHH
Q 013835 306 QCKAVVHHG----G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML--DPKVK 378 (435)
Q Consensus 306 ~~~l~I~hg----G-~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll--~~~~~ 378 (435)
++|++|.-+ | .++++||+++|+|+|+... ......+.+.+.|. .++.+ +.+++.++|..++ +++.+
T Consensus 263 ~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~~~~g~-~~~~~--~~~~l~~~i~~~~~~~~~~~ 335 (355)
T cd03819 263 LADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVRPGETGL-LVPPG--DAEALAQALDQILSLLPEGR 335 (355)
T ss_pred hCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhCCCceE-EeCCC--CHHHHHHHHHHHHhhCHHHH
Confidence 999999755 2 3699999999999996543 34566777777886 66544 7899999996555 77777
Q ss_pred HHHHHHHHHhh
Q 013835 379 ERAVELAEAME 389 (435)
Q Consensus 379 ~~~~~~~~~~~ 389 (435)
+++.+.+++..
T Consensus 336 ~~~~~~a~~~~ 346 (355)
T cd03819 336 AKMFAKARMCV 346 (355)
T ss_pred HHHHHHHHHHH
Confidence 77766655544
No 59
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.39 E-value=2e-10 Score=109.46 Aligned_cols=160 Identities=11% Similarity=0.071 Sum_probs=108.3
Q ss_pred CCcEEEeeCCCCC-CChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCC------CCCCceEEcCCCCh-hhhcccccEEE
Q 013835 240 SKPIYIGFGSLPV-QEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLA------EPKDSIYLLDNIPH-DWLFLQCKAVV 311 (435)
Q Consensus 240 ~~~v~v~~Gs~~~-~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~------~~~~~v~~~~~~p~-~~~l~~~~l~I 311 (435)
++.+++..|.+.. ...+.+++.+....++.+.++++.+.+.+.+.+. ...+++.+.++.+. ..++..+|++|
T Consensus 196 ~~~~il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v 275 (371)
T cd04962 196 GEKVLIHISNFRPVKRIDDVIRIFAKVRKEVPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFL 275 (371)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHhcCCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEE
Confidence 3466777888753 2333444433222222356777665443322221 24578999998754 33399999999
Q ss_pred EeC----CchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 013835 312 HHG----GAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAE 386 (435)
Q Consensus 312 ~hg----G~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~ 386 (435)
.-. ...++.||+++|+|+|+.. ....+..+++...|. .++.. +.+++.+++.+++ |++.++.+++.++
T Consensus 276 ~ps~~E~~~~~~~EAma~g~PvI~s~----~~~~~e~i~~~~~G~-~~~~~--~~~~l~~~i~~l~~~~~~~~~~~~~~~ 348 (371)
T cd04962 276 LPSEKESFGLAALEAMACGVPVVASN----AGGIPEVVKHGETGF-LVDVG--DVEAMAEYALSLLEDDELWQEFSRAAR 348 (371)
T ss_pred eCCCcCCCccHHHHHHHcCCCEEEeC----CCCchhhhcCCCceE-EcCCC--CHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 554 3469999999999999754 344667777777886 66554 6799999999999 9988888777766
Q ss_pred Hh-hccCcHHHHHHHHHHhcc
Q 013835 387 AM-EKEDGVTGAVKAFFKHYS 406 (435)
Q Consensus 387 ~~-~~~~~~~~~~~~i~~~l~ 406 (435)
+. .+.-+++..++.+.++++
T Consensus 349 ~~~~~~fs~~~~~~~~~~~y~ 369 (371)
T cd04962 349 NRAAERFDSERIVPQYEALYR 369 (371)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 65 555688888888877664
No 60
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.38 E-value=4.2e-11 Score=113.64 Aligned_cols=143 Identities=17% Similarity=0.200 Sum_probs=96.0
Q ss_pred CCcEEEeeCCCCCC-ChHHHHHHHHHHHHH--hCCeEEEEcCCCCCCCC------CCCCCceEEcCCCChhhh---cccc
Q 013835 240 SKPIYIGFGSLPVQ-EPEKMTQIIVEAFEQ--TGQRGIINKGWGGLGNL------AEPKDSIYLLDNIPHDWL---FLQC 307 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~-~~~~~~~~~~~~~~~--~~~~~iv~~~~~~~~~~------~~~~~~v~~~~~~p~~~~---l~~~ 307 (435)
++.+++..|++... ..+.+++.+ +.+.. .+.++++.+++...+.+ ....+++.+.+++|+.++ +.++
T Consensus 201 ~~~~i~~~G~~~~~k~~~~l~~~~-~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 279 (374)
T cd03817 201 DEPVLLYVGRLAKEKNIDFLIRAF-ARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAA 279 (374)
T ss_pred CCeEEEEEeeeecccCHHHHHHHH-HHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHc
Confidence 45677788887532 334444433 33333 34667766543322211 134679999999998876 8999
Q ss_pred cEEEEeCC----chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHH
Q 013835 308 KAVVHHGG----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAV 382 (435)
Q Consensus 308 ~l~I~hgG----~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~ 382 (435)
|++|..+. .+++.||+++|+|+|+... ...+..+++.+.|. .++..+ . ++.+++.+++ +++.++.+.
T Consensus 280 d~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~~~g~-~~~~~~--~-~~~~~i~~l~~~~~~~~~~~ 351 (374)
T cd03817 280 DLFVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADGENGF-LFPPGD--E-ALAEALLRLLQDPELRRRLS 351 (374)
T ss_pred CEEEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecCceeE-EeCCCC--H-HHHHHHHHHHhChHHHHHHH
Confidence 99996553 3789999999999997653 44667777778886 665442 2 9999999999 888766666
Q ss_pred HHHHHhhcc
Q 013835 383 ELAEAMEKE 391 (435)
Q Consensus 383 ~~~~~~~~~ 391 (435)
+.+++....
T Consensus 352 ~~~~~~~~~ 360 (374)
T cd03817 352 KNAEESAEK 360 (374)
T ss_pred HHHHHHHHH
Confidence 655555443
No 61
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.37 E-value=2.5e-10 Score=110.38 Aligned_cols=158 Identities=15% Similarity=0.173 Sum_probs=105.0
Q ss_pred CCcEEEeeCCCCCCChHHHHHHHHHHHHHh----CCeEEEEcCCCCCCCCCC-----CCCceEEcCCCChhhh---cccc
Q 013835 240 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT----GQRGIINKGWGGLGNLAE-----PKDSIYLLDNIPHDWL---FLQC 307 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~----~~~~iv~~~~~~~~~~~~-----~~~~v~~~~~~p~~~~---l~~~ 307 (435)
++.+++..|++..... ++.++++++.. +.++++++.+...+.+.+ ..+||.+.+++|.+++ ++.+
T Consensus 228 ~~~~i~~~G~l~~~kg---~~~li~a~~~l~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~a 304 (412)
T PRK10307 228 GKKIVLYSGNIGEKQG---LELVIDAARRLRDRPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMA 304 (412)
T ss_pred CCEEEEEcCccccccC---HHHHHHHHHHhccCCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhc
Confidence 3467777898854322 23345555433 356776654433222211 2258999999998776 8999
Q ss_pred cEEEEeC---C-----chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHH
Q 013835 308 KAVVHHG---G-----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVK 378 (435)
Q Consensus 308 ~l~I~hg---G-----~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~ 378 (435)
|++|... + -+.+.|++++|+|+|+....+. .....++ +.|+ .++.. +.++++++|.+++ |++.+
T Consensus 305 Di~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i~--~~G~-~~~~~--d~~~la~~i~~l~~~~~~~ 377 (412)
T PRK10307 305 DCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLVE--GIGV-CVEPE--SVEALVAAIAALARQALLR 377 (412)
T ss_pred CEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHHh--CCcE-EeCCC--CHHHHHHHHHHHHhCHHHH
Confidence 9877431 2 2457899999999998865432 1223444 6886 66554 6899999999999 99888
Q ss_pred HHHHHHHHHhhc-cCcHHHHHHHHHHhccc
Q 013835 379 ERAVELAEAMEK-EDGVTGAVKAFFKHYSR 407 (435)
Q Consensus 379 ~~~~~~~~~~~~-~~~~~~~~~~i~~~l~~ 407 (435)
+++++.++.... .-+++..++.+++.+..
T Consensus 378 ~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 407 (412)
T PRK10307 378 PKLGTVAREYAERTLDKENVLRQFIADIRG 407 (412)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 888888777554 45777777777666543
No 62
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.37 E-value=2.7e-10 Score=116.92 Aligned_cols=167 Identities=8% Similarity=0.053 Sum_probs=111.5
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCChHHHHHHHHHHHHHhC-----CeEEEEcCCCC-CCCC-----------------CC
Q 013835 231 SLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTG-----QRGIINKGWGG-LGNL-----------------AE 287 (435)
Q Consensus 231 ~l~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~-----~~~iv~~~~~~-~~~~-----------------~~ 287 (435)
.+..|+...++.++++.|.+.... -+..+++++.... ..+.+..|..+ .+.+ ..
T Consensus 469 ~l~r~~~~pdkpvIL~VGRL~p~K---Gi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~~lg 545 (1050)
T TIGR02468 469 EIMRFFTNPRKPMILALARPDPKK---NITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLTSVLKLIDKYD 545 (1050)
T ss_pred HHHhhcccCCCcEEEEEcCCcccc---CHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHHHHHHHHHHhC
Confidence 355666545556778888875432 3444666665432 12322333322 1111 12
Q ss_pred CCCceEEcCCCChhhh---cccc----cEEEEeC---C-chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCC
Q 013835 288 PKDSIYLLDNIPHDWL---FLQC----KAVVHHG---G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIP 356 (435)
Q Consensus 288 ~~~~v~~~~~~p~~~~---l~~~----~l~I~hg---G-~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~ 356 (435)
+.++|.+.+++++.++ +..| |+||.-+ | ..+++||+++|+|+|+....+ ....++....|+ .++
T Consensus 546 L~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g~nGl-LVd 620 (1050)
T TIGR02468 546 LYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVLDNGL-LVD 620 (1050)
T ss_pred CCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccCCcEE-EEC
Confidence 4578999999998887 6655 6999865 2 269999999999999765443 445666667886 676
Q ss_pred CCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHhhccCcHHHHHHHHHHhccc
Q 013835 357 VDEFSLPKLINAINFML-DPKVKERAVELAEAMEKEDGVTGAVKAFFKHYSR 407 (435)
Q Consensus 357 ~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 407 (435)
+. ++++++++|.+++ |++.++++.+.+.+....-.++..++.+.+.+..
T Consensus 621 P~--D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~FSWe~ia~~yl~~i~~ 670 (1050)
T TIGR02468 621 PH--DQQAIADALLKLVADKQLWAECRQNGLKNIHLFSWPEHCKTYLSRIAS 670 (1050)
T ss_pred CC--CHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 54 6899999999999 9998888887777665556777777766655543
No 63
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.37 E-value=1.1e-09 Score=106.55 Aligned_cols=156 Identities=11% Similarity=0.016 Sum_probs=107.0
Q ss_pred CCcEEEeeCCCCCCChHHHHHHHHHHHHH---h--CCeEEEEcCCCCC-CCCC-----------------CCCCceEEcC
Q 013835 240 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQ---T--GQRGIINKGWGGL-GNLA-----------------EPKDSIYLLD 296 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~---~--~~~~iv~~~~~~~-~~~~-----------------~~~~~v~~~~ 296 (435)
+..++++.|.+.... -++.++++++. . ..++++..|..+. ..+. .+.++|.+.+
T Consensus 247 ~~~~i~~vGrl~~~K---g~~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g 323 (439)
T TIGR02472 247 EKPPILAISRPDRRK---NIPSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPK 323 (439)
T ss_pred CCcEEEEEcCCcccC---CHHHHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecC
Confidence 346778888875432 23445666643 1 2334444444321 1111 1467899999
Q ss_pred CCChhhh---cccc----cEEEEeC---C-chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHH
Q 013835 297 NIPHDWL---FLQC----KAVVHHG---G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKL 365 (435)
Q Consensus 297 ~~p~~~~---l~~~----~l~I~hg---G-~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l 365 (435)
+++.+++ ++.+ |+||..+ | ..+++||+++|+|+|+... ..+.+.+++...|+ .++.. +++++
T Consensus 324 ~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv~~~~~G~-lv~~~--d~~~l 396 (439)
T TIGR02472 324 HHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDIIANCRNGL-LVDVL--DLEAI 396 (439)
T ss_pred CCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHhcCCCcEE-EeCCC--CHHHH
Confidence 9888776 6655 8999765 3 3699999999999996654 34667777767886 66655 68999
Q ss_pred HHHHHHhc-CHHHHHHHHHHHHHhh-ccCcHHHHHHHHHHhc
Q 013835 366 INAINFML-DPKVKERAVELAEAME-KEDGVTGAVKAFFKHY 405 (435)
Q Consensus 366 ~~~i~~ll-~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l 405 (435)
+++|.+++ |++.++.+.+.+++.. +.-+++..++.+++++
T Consensus 397 a~~i~~ll~~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 397 ASALEDALSDSSQWQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 99999999 9988888777766543 4568999998888765
No 64
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.36 E-value=1.1e-10 Score=109.47 Aligned_cols=153 Identities=14% Similarity=0.133 Sum_probs=100.1
Q ss_pred CCcEEEeeCCCCCCChHHHHHHHHHHHHHh-----CCeEEEEcCCCCCCCC------CCCCCceEEcCCCC-hhhhcccc
Q 013835 240 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGLGNL------AEPKDSIYLLDNIP-HDWLFLQC 307 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~-----~~~~iv~~~~~~~~~~------~~~~~~v~~~~~~p-~~~~l~~~ 307 (435)
++.+++..|++..... ++.++++++.. +.++++.+.+.....+ .....++.+.++.. ...++.+|
T Consensus 177 ~~~~i~~~g~~~~~K~---~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~a 253 (348)
T cd03820 177 KSKRILAVGRLVPQKG---FDLLIEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYYAKA 253 (348)
T ss_pred CCcEEEEEEeeccccC---HHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhC
Confidence 4466777777644222 22234444332 4566666543332211 12457888888822 23339999
Q ss_pred cEEEEeCC----chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcC-CCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHH
Q 013835 308 KAVVHHGG----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARG-VGPPPIPVDEFSLPKLINAINFML-DPKVKERA 381 (435)
Q Consensus 308 ~l~I~hgG----~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g-~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~ 381 (435)
|++|..+. .+++.||+++|+|+|+.+..+.+ ..+.+.+ .|+ .++.. +.++++++|.+++ |++.++++
T Consensus 254 d~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~~~~g~-~~~~~--~~~~~~~~i~~ll~~~~~~~~~ 326 (348)
T cd03820 254 SIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIEDGVNGL-LVPNG--DVEALAEALLRLMEDEELRKRM 326 (348)
T ss_pred CEEEeCccccccCHHHHHHHHcCCCEEEecCCCch----HhhhccCcceE-EeCCC--CHHHHHHHHHHHHcCHHHHHHH
Confidence 99998763 47899999999999977654433 2333444 775 55543 6799999999999 99999988
Q ss_pred HHHHHHhhccCcHHHHHHHHH
Q 013835 382 VELAEAMEKEDGVTGAVKAFF 402 (435)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~i~ 402 (435)
.+.++...+.-++++.++.++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~ 347 (348)
T cd03820 327 GANARESAERFSIENIIKQWE 347 (348)
T ss_pred HHHHHHHHHHhCHHHHHHHhc
Confidence 888777776667877776653
No 65
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.35 E-value=2.6e-10 Score=108.08 Aligned_cols=157 Identities=14% Similarity=0.122 Sum_probs=100.9
Q ss_pred CCcEEEeeCCCCCC-ChHHHHHHHHHHHHHh--CCeEEEEcCCCCCCCC------CCCCCceEEcCCCChhhh---cccc
Q 013835 240 SKPIYIGFGSLPVQ-EPEKMTQIIVEAFEQT--GQRGIINKGWGGLGNL------AEPKDSIYLLDNIPHDWL---FLQC 307 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~-~~~~~~~~~~~~~~~~--~~~~iv~~~~~~~~~~------~~~~~~v~~~~~~p~~~~---l~~~ 307 (435)
++.+++..|+.... ..+.+++ +++.+.+. +..+++.+.+.....+ ....+++.+.+++++.++ +.+|
T Consensus 201 ~~~~i~~~g~~~~~k~~~~li~-~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 279 (377)
T cd03798 201 DKKVILFVGRLVPRKGIDYLIE-ALARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAA 279 (377)
T ss_pred CceEEEEeccCccccCHHHHHH-HHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhc
Confidence 45777888887543 2233333 22333222 3555555433222211 124679999999998776 8999
Q ss_pred cEEEEe----CCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHH
Q 013835 308 KAVVHH----GGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAV 382 (435)
Q Consensus 308 ~l~I~h----gG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~ 382 (435)
|++|.. |..+++.||+++|+|+|+.+.. .....+++.+.|. .++.. +.+++.++|.+++ ++.. +...
T Consensus 280 d~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~~~~g~-~~~~~--~~~~l~~~i~~~~~~~~~-~~~~ 351 (377)
T cd03798 280 DVFVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITDGENGL-LVPPG--DPEALAEAILRLLADPWL-RLGR 351 (377)
T ss_pred CeeecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcCCccee-EECCC--CHHHHHHHHHHHhcCcHH-HHhH
Confidence 999944 4457899999999999976543 4556777777786 55544 6899999999999 7775 3444
Q ss_pred HHHHHhhccCcHHHHHHHHHHhc
Q 013835 383 ELAEAMEKEDGVTGAVKAFFKHY 405 (435)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~i~~~l 405 (435)
+..+...+.-.++..++.+.+.+
T Consensus 352 ~~~~~~~~~~s~~~~~~~~~~~~ 374 (377)
T cd03798 352 AARRRVAERFSWENVAERLLELY 374 (377)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 44444444455666666665554
No 66
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.35 E-value=4.1e-10 Score=106.57 Aligned_cols=141 Identities=18% Similarity=0.182 Sum_probs=97.7
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHHHHHHhC-CeEEEEcCCCCCCCC------CCCCCceEEcCCCChhhh---ccccc
Q 013835 239 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTG-QRGIINKGWGGLGNL------AEPKDSIYLLDNIPHDWL---FLQCK 308 (435)
Q Consensus 239 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~-~~~iv~~~~~~~~~~------~~~~~~v~~~~~~p~~~~---l~~~~ 308 (435)
.++.+++..|++.... -++.+++++++.. .++++.+.+...+.+ ....+||.+.+++++.++ ++.||
T Consensus 189 ~~~~~i~~~G~~~~~K---~~~~li~a~~~l~~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad 265 (357)
T cd03795 189 AGRPFFLFVGRLVYYK---GLDVLLEAAAALPDAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACD 265 (357)
T ss_pred CCCcEEEEeccccccc---CHHHHHHHHHhccCcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCC
Confidence 3457788888875332 2445667777665 777776644322211 124579999999998775 89999
Q ss_pred EEEEe-----CC-chHHHHHHHhCCCEEeecCCCChhhHHHHHHH-cCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHH
Q 013835 309 AVVHH-----GG-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHA-RGVGPPPIPVDEFSLPKLINAINFML-DPKVKER 380 (435)
Q Consensus 309 l~I~h-----gG-~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~-~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~ 380 (435)
++|.- .| ..++.||+++|+|+|+....+ ....+.. .+.|. .++.+ +.++++++|.+++ |++.+++
T Consensus 266 ~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~----~~~~i~~~~~~g~-~~~~~--d~~~~~~~i~~l~~~~~~~~~ 338 (357)
T cd03795 266 VFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGT----GGSYVNLHGVTGL-VVPPG--DPAALAEAIRRLLEDPELRER 338 (357)
T ss_pred EEEeCCcccccccchHHHHHHHcCCCEEecCCCC----chhHHhhCCCceE-EeCCC--CHHHHHHHHHHHHHCHHHHHH
Confidence 99833 23 357999999999999655443 4455554 67885 55543 7899999999999 9888877
Q ss_pred HHHHHHHhh
Q 013835 381 AVELAEAME 389 (435)
Q Consensus 381 ~~~~~~~~~ 389 (435)
+++.+++..
T Consensus 339 ~~~~~~~~~ 347 (357)
T cd03795 339 LGEAARERA 347 (357)
T ss_pred HHHHHHHHH
Confidence 776665543
No 67
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.34 E-value=4.1e-10 Score=103.15 Aligned_cols=313 Identities=17% Similarity=0.203 Sum_probs=167.6
Q ss_pred CccchhHHHHHHHHHHHCCCeEEEEeCCC--cHHHHHhcCceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHHHhhc
Q 013835 6 TRGDVQPFVAIGKRLQDYGHRVRLATHSN--FKDFVLTAGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLLPAC 83 (435)
Q Consensus 6 ~~GH~~p~~~la~~L~~rGh~V~~~~~~~--~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (435)
..-|+.-+..++++|.++||+|.+.+.+. ..+.+...|++++.++. .+ .+. ...+.........
T Consensus 9 ~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~--------~g-~~~---~~Kl~~~~~R~~~-- 74 (335)
T PF04007_consen 9 HPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGK--------HG-DSL---YGKLLESIERQYK-- 74 (335)
T ss_pred CchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcC--------CC-CCH---HHHHHHHHHHHHH--
Confidence 34599999999999999999999998654 45778889999999971 11 111 1111111111111
Q ss_pred cCCCccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCC-CCCCCCcc-cCCCccchHHHHHHHHHHHHHH
Q 013835 84 RDPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTS-EFPHPLSR-VKQPAGYRLSYQIVDSLIWLGI 161 (435)
Q Consensus 84 ~~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~-~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 161 (435)
+.+.+++++||++|+- ....+..+|..+|+|+|.+.=+...... ....|+.. +-.|.
T Consensus 75 ---l~~~~~~~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~~Lt~Pla~~i~~P~----------------- 133 (335)
T PF04007_consen 75 ---LLKLIKKFKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQNRLTLPLADVIITPE----------------- 133 (335)
T ss_pred ---HHHHHHhhCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhccceeehhcCCeeECCc-----------------
Confidence 1223455799999975 3344568999999999998532211100 00000000 00000
Q ss_pred hHHHHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCCCCcCCCCCCCCCCe-eeecc---cccCCCCCCCchHHHHHHH
Q 013835 162 RDMINDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVD-VVGFC---FLDLASNYEPPESLVKWLE 237 (435)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vG~~---~~~~~~~~~~~~~l~~~~~ 237 (435)
.+.....+.+|.+ .++. |-|.- ++. .+.++++..+.+.
T Consensus 134 --~~~~~~~~~~G~~---------------------------------~~i~~y~G~~E~ayl~---~F~Pd~~vl~~lg 175 (335)
T PF04007_consen 134 --AIPKEFLKRFGAK---------------------------------NQIRTYNGYKELAYLH---PFKPDPEVLKELG 175 (335)
T ss_pred --ccCHHHHHhcCCc---------------------------------CCEEEECCeeeEEeec---CCCCChhHHHHcC
Confidence 0000000012211 0111 11210 011 1233333444343
Q ss_pred c-CCCcEEEeeCCC---CCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcC-CCChhhhcccccEEEE
Q 013835 238 A-GSKPIYIGFGSL---PVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLD-NIPHDWLFLQCKAVVH 312 (435)
Q Consensus 238 ~-~~~~v~v~~Gs~---~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~-~~p~~~~l~~~~l~I~ 312 (435)
- .++.|++=+.+. ........+..+++.+++.+..+++.....+...+.+.- ++.+.+ -+...+++..||++|+
T Consensus 176 ~~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~~~~~~~~-~~~i~~~~vd~~~Ll~~a~l~Ig 254 (335)
T PF04007_consen 176 LDDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQRELFEKY-GVIIPPEPVDGLDLLYYADLVIG 254 (335)
T ss_pred CCCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcchhhHHhcc-CccccCCCCCHHHHHHhcCEEEe
Confidence 2 345565544443 112234456778888888877655454333322221111 233332 3455578999999999
Q ss_pred eCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHhhccC
Q 013835 313 HGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPKVKERAVELAEAMEKED 392 (435)
Q Consensus 313 hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 392 (435)
-||. +..||...|+|.|-+ ..++-...=+++.+.|.- .... +++++.+.++..+ ..+.+... ....+
T Consensus 255 ~ggT-Ma~EAA~LGtPaIs~-~~g~~~~vd~~L~~~Gll---~~~~--~~~ei~~~v~~~~--~~~~~~~~----~~~~d 321 (335)
T PF04007_consen 255 GGGT-MAREAALLGTPAISC-FPGKLLAVDKYLIEKGLL---YHST--DPDEIVEYVRKNL--GKRKKIRE----KKSED 321 (335)
T ss_pred CCcH-HHHHHHHhCCCEEEe-cCCcchhHHHHHHHCCCe---EecC--CHHHHHHHHHHhh--hcccchhh----hhccC
Confidence 9995 899999999999975 223333344567777653 2222 6788887666543 22222211 12356
Q ss_pred cHHHHHHHHHHhc
Q 013835 393 GVTGAVKAFFKHY 405 (435)
Q Consensus 393 ~~~~~~~~i~~~l 405 (435)
..+.+++.|++++
T Consensus 322 ~~~~i~~~i~~~~ 334 (335)
T PF04007_consen 322 PTDLIIEEIEEYI 334 (335)
T ss_pred HHHHHHHHHHHhh
Confidence 7778888888765
No 68
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.34 E-value=6.4e-10 Score=105.58 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=83.1
Q ss_pred CCCceEEcCCCC-hhhh---cccccEEEEeCC----chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCC
Q 013835 288 PKDSIYLLDNIP-HDWL---FLQCKAVVHHGG----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDE 359 (435)
Q Consensus 288 ~~~~v~~~~~~p-~~~~---l~~~~l~I~hgG----~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~ 359 (435)
...++.+.++++ ..++ ++.+|++|.... .+++.||+++|+|+|+.... .....+...+.|+ .++..
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~~~g~-~~~~~- 315 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDHGVTGY-LAKPG- 315 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeCCCceE-EeCCC-
Confidence 567899999998 5544 899999998653 47999999999999976543 2334455556775 55543
Q ss_pred CCHHHHHHHHHHhc-CHHHHHHHHHHHHHhhc-cCcHHHHHHHHHHhcc
Q 013835 360 FSLPKLINAINFML-DPKVKERAVELAEAMEK-EDGVTGAVKAFFKHYS 406 (435)
Q Consensus 360 ~~~~~l~~~i~~ll-~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~l~ 406 (435)
+.+++++++.+++ |++.+.++.+.++.... .-+++..++.+.+++.
T Consensus 316 -~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 363 (365)
T cd03825 316 -DPEDLAEGIEWLLADPDEREELGEAARELAENEFDSRVQAKRYLSLYE 363 (365)
T ss_pred -CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 6899999999999 88877766666666543 4577888888777654
No 69
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.29 E-value=3.4e-09 Score=101.03 Aligned_cols=158 Identities=13% Similarity=0.072 Sum_probs=103.8
Q ss_pred CCcEEEeeCCCCCCC-hHHHHHHHHHHHHH-hCCeEEEEcCCCCCC--------C---CCCCCCceEEcCCC--Chhhh-
Q 013835 240 SKPIYIGFGSLPVQE-PEKMTQIIVEAFEQ-TGQRGIINKGWGGLG--------N---LAEPKDSIYLLDNI--PHDWL- 303 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~-~~~~~~~~~~~~~~-~~~~~iv~~~~~~~~--------~---~~~~~~~v~~~~~~--p~~~~- 303 (435)
+..+++..|.+.... .+.+++.+....+. .+.++++++++...+ . .....+++.+.++. +..++
T Consensus 189 ~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 268 (372)
T cd03792 189 ERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVN 268 (372)
T ss_pred CCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHH
Confidence 346778889885432 23333322222222 245677666543211 1 11245678888876 55554
Q ss_pred --cccccEEEEeCC----chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHH
Q 013835 304 --FLQCKAVVHHGG----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPK 376 (435)
Q Consensus 304 --l~~~~l~I~hgG----~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~ 376 (435)
++.+|+|+..+. ..++.||+++|+|+|+.... .....++....|+ .++ +.++++++|.+++ |++
T Consensus 269 ~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~~~g~-~~~----~~~~~a~~i~~ll~~~~ 339 (372)
T cd03792 269 ALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDGETGF-LVD----TVEEAAVRILYLLRDPE 339 (372)
T ss_pred HHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccCCceE-EeC----CcHHHHHHHHHHHcCHH
Confidence 899999997653 35999999999999976533 3445666667775 443 4578888999999 998
Q ss_pred HHHHHHHHHHHhh-ccCcHHHHHHHHHHhcc
Q 013835 377 VKERAVELAEAME-KEDGVTGAVKAFFKHYS 406 (435)
Q Consensus 377 ~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~ 406 (435)
.++.+.+.+++.. +.-.++..++.+.+++.
T Consensus 340 ~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 340 LRRKMGANAREHVRENFLITRHLKDYLYLIS 370 (372)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 8888877777754 45688888888777654
No 70
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.28 E-value=1.2e-09 Score=103.67 Aligned_cols=154 Identities=16% Similarity=0.118 Sum_probs=102.5
Q ss_pred CCCcEEEeeCCCCCC-ChHHHHHHHHHHHHH--hCCeEEEEcCCCCCCC--------CCCCCCceEEcCCCChhhh---c
Q 013835 239 GSKPIYIGFGSLPVQ-EPEKMTQIIVEAFEQ--TGQRGIINKGWGGLGN--------LAEPKDSIYLLDNIPHDWL---F 304 (435)
Q Consensus 239 ~~~~v~v~~Gs~~~~-~~~~~~~~~~~~~~~--~~~~~iv~~~~~~~~~--------~~~~~~~v~~~~~~p~~~~---l 304 (435)
.++.+++..|++... ..+.+++ ++..+.+ .+.++++++.+..... .....+++.+.++++.+++ +
T Consensus 201 ~~~~~i~~~G~~~~~K~~~~li~-a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 279 (375)
T cd03821 201 PDKRIILFLGRLHPKKGLDLLIE-AFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAAL 279 (375)
T ss_pred CCCcEEEEEeCcchhcCHHHHHH-HHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHH
Confidence 345777888887532 2233333 2233332 2456665553322110 1124689999999997776 8
Q ss_pred ccccEEEEeCC----chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHH
Q 013835 305 LQCKAVVHHGG----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKE 379 (435)
Q Consensus 305 ~~~~l~I~hgG----~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~ 379 (435)
..+|++|...- .+++.||+++|+|+|+.+.. .....+.. +.|. ..+ . +.+++.++|.+++ |++.++
T Consensus 280 ~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~~-~~~~-~~~-~--~~~~~~~~i~~l~~~~~~~~ 350 (375)
T cd03821 280 ADADLFVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIEY-GCGW-VVD-D--DVDALAAALRRALELPQRLK 350 (375)
T ss_pred hhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhhc-CceE-EeC-C--ChHHHHHHHHHHHhCHHHHH
Confidence 99999986553 47899999999999976543 35566666 7785 443 2 4499999999999 888888
Q ss_pred HHHHHHHHh-hccCcHHHHHHHHH
Q 013835 380 RAVELAEAM-EKEDGVTGAVKAFF 402 (435)
Q Consensus 380 ~~~~~~~~~-~~~~~~~~~~~~i~ 402 (435)
.+.+.+++. .+.-.++..++.+.
T Consensus 351 ~~~~~~~~~~~~~~s~~~~~~~~~ 374 (375)
T cd03821 351 AMGENGRALVEERFSWTAIAQQLL 374 (375)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhh
Confidence 887777776 55667887777654
No 71
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.28 E-value=1.8e-09 Score=104.86 Aligned_cols=100 Identities=16% Similarity=0.163 Sum_probs=76.5
Q ss_pred hcccccEEEEe-----CCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHH
Q 013835 303 LFLQCKAVVHH-----GGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPK 376 (435)
Q Consensus 303 ~l~~~~l~I~h-----gG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~ 376 (435)
+++.||+++.. +|..+++||+++|+|+|+-|..+++......+.+.|.++ ... +.+++.++|.+++ |++
T Consensus 316 ~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~---~~~--d~~~La~~l~~ll~~~~ 390 (425)
T PRK05749 316 LYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAI---QVE--DAEDLAKAVTYLLTDPD 390 (425)
T ss_pred HHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeE---EEC--CHHHHHHHHHHHhcCHH
Confidence 38999985432 233469999999999999998888888888777777664 222 6899999999999 999
Q ss_pred HHHHHHHHHHHhhcc--CcHHHHHHHHHHhccc
Q 013835 377 VKERAVELAEAMEKE--DGVTGAVKAFFKHYSR 407 (435)
Q Consensus 377 ~~~~~~~~~~~~~~~--~~~~~~~~~i~~~l~~ 407 (435)
.++++.+.+++.... +..++..+.+.+.+..
T Consensus 391 ~~~~m~~~a~~~~~~~~~~~~~~~~~l~~~l~~ 423 (425)
T PRK05749 391 ARQAYGEAGVAFLKQNQGALQRTLQLLEPYLPP 423 (425)
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHHHHHhccc
Confidence 998888887776643 3457888887776543
No 72
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.27 E-value=2.9e-09 Score=102.34 Aligned_cols=153 Identities=12% Similarity=0.093 Sum_probs=99.3
Q ss_pred CCCcEEEeeCCCCC-CChHHHHHHHHHHHHHh----CCeEEEEcCCCCC--------CCC-------CCCCCceEEcCCC
Q 013835 239 GSKPIYIGFGSLPV-QEPEKMTQIIVEAFEQT----GQRGIINKGWGGL--------GNL-------AEPKDSIYLLDNI 298 (435)
Q Consensus 239 ~~~~v~v~~Gs~~~-~~~~~~~~~~~~~~~~~----~~~~iv~~~~~~~--------~~~-------~~~~~~v~~~~~~ 298 (435)
.++.++++.|++.. ...+.+++.+.+..++. +.++++++++... +.+ ..+.++|.+.+++
T Consensus 209 ~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~ 288 (392)
T cd03805 209 SGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSI 288 (392)
T ss_pred CCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 34577888888754 33344444333322222 4566666543321 111 2345799999999
Q ss_pred Chhhh---cccccEEEEeCC----chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHH
Q 013835 299 PHDWL---FLQCKAVVHHGG----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINF 371 (435)
Q Consensus 299 p~~~~---l~~~~l~I~hgG----~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ 371 (435)
|..++ +..+|+++.... ..++.||+++|+|+|+.-..+ ....+.+.+.|+ .++ . +.++++++|.+
T Consensus 289 ~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~~~~g~-~~~--~-~~~~~a~~i~~ 360 (392)
T cd03805 289 SDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVDGETGF-LCE--P-TPEEFAEAMLK 360 (392)
T ss_pred ChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhccCCceE-EeC--C-CHHHHHHHHHH
Confidence 98875 899999996432 267899999999999765433 445666667785 443 2 68999999999
Q ss_pred hc-CHHHHHHHHHHHHHhh-ccCcHHHHHH
Q 013835 372 ML-DPKVKERAVELAEAME-KEDGVTGAVK 399 (435)
Q Consensus 372 ll-~~~~~~~~~~~~~~~~-~~~~~~~~~~ 399 (435)
++ |++.++++.+.+++.. +.-.++..++
T Consensus 361 l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~ 390 (392)
T cd03805 361 LANDPDLADRMGAAGRKRVKEKFSTEAFAE 390 (392)
T ss_pred HHhChHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 99 8887777766665543 3345555443
No 73
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.27 E-value=5.8e-09 Score=99.58 Aligned_cols=160 Identities=15% Similarity=0.116 Sum_probs=104.2
Q ss_pred CCcEEEeeCCCCCC-ChHHHHHHHHHHHHHh-----CCeEEEEcCCCCCCCCC------CCCCceEEcCCCCh-hhhccc
Q 013835 240 SKPIYIGFGSLPVQ-EPEKMTQIIVEAFEQT-----GQRGIINKGWGGLGNLA------EPKDSIYLLDNIPH-DWLFLQ 306 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~-~~~~~~~~~~~~~~~~-----~~~~iv~~~~~~~~~~~------~~~~~v~~~~~~p~-~~~l~~ 306 (435)
++.++++.|.+... ....+++.+.+..++. +.++++++.+...+.+. .+..++.+.++... .++++.
T Consensus 193 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 272 (374)
T TIGR03088 193 ESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQA 272 (374)
T ss_pred CCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh
Confidence 45788888988643 3333444333333222 34666665433222221 23467777775432 334999
Q ss_pred ccEEEEe----CCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHH
Q 013835 307 CKAVVHH----GGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERA 381 (435)
Q Consensus 307 ~~l~I~h----gG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~ 381 (435)
+|++|.- |-.+++.||+++|+|+|+... ..+.+.+++...|. .++.. +.++++++|.+++ |++.+..+
T Consensus 273 adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~~~~g~-~~~~~--d~~~la~~i~~l~~~~~~~~~~ 345 (374)
T TIGR03088 273 LDLFVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQHGVTGA-LVPPG--DAVALARALQPYVSDPAARRAH 345 (374)
T ss_pred cCEEEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcCCCceE-EeCCC--CHHHHHHHHHHHHhCHHHHHHH
Confidence 9999953 334799999999999997554 34667777777786 66544 6899999999999 88877766
Q ss_pred HHHHHHhh-ccCcHHHHHHHHHHhcc
Q 013835 382 VELAEAME-KEDGVTGAVKAFFKHYS 406 (435)
Q Consensus 382 ~~~~~~~~-~~~~~~~~~~~i~~~l~ 406 (435)
.+.+++.. +.-+++..++.+++++.
T Consensus 346 ~~~a~~~~~~~fs~~~~~~~~~~~y~ 371 (374)
T TIGR03088 346 GAAGRARAEQQFSINAMVAAYAGLYD 371 (374)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66555543 45678888887777654
No 74
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.27 E-value=1.1e-09 Score=105.34 Aligned_cols=158 Identities=13% Similarity=0.079 Sum_probs=93.6
Q ss_pred CCcEEEeeCCCCCC-ChHHHHHHHHHHHH-Hh-CCeEEEEcCCCCCCCCC------CCCCceEEcCCCChhhh---cccc
Q 013835 240 SKPIYIGFGSLPVQ-EPEKMTQIIVEAFE-QT-GQRGIINKGWGGLGNLA------EPKDSIYLLDNIPHDWL---FLQC 307 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~-~~~~~~~~~~~~~~-~~-~~~~iv~~~~~~~~~~~------~~~~~v~~~~~~p~~~~---l~~~ 307 (435)
++.+++..|++... ..+.+++.+ +.+. .. +.++++++.+...+.+. .+.++|.+.++++.+++ ++.+
T Consensus 192 ~~~~i~~~grl~~~Kg~~~li~a~-~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~a 270 (398)
T cd03796 192 DKITIVVISRLVYRKGIDLLVGII-PEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQG 270 (398)
T ss_pred CceEEEEEeccchhcCHHHHHHHH-HHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhC
Confidence 45778888887542 233333322 2222 22 45566555332211111 24578999999998776 8999
Q ss_pred cEEEEeC---Cc-hHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHH-HH
Q 013835 308 KAVVHHG---GA-GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKE-RA 381 (435)
Q Consensus 308 ~l~I~hg---G~-~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~-~~ 381 (435)
|++|.-. |. .++.||+++|+|+|+.+..+ ..+.+++ |.+. ... . +.+++.+++.+++ +...+. ..
T Consensus 271 d~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~-~~~~-~~~-~--~~~~l~~~l~~~l~~~~~~~~~~ 341 (398)
T cd03796 271 HIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP-DMIL-LAE-P--DVESIVRKLEEAISILRTGKHDP 341 (398)
T ss_pred CEEEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC-Ccee-ecC-C--CHHHHHHHHHHHHhChhhhhhHH
Confidence 9998654 22 59999999999999766543 3345544 3343 332 2 6799999999998 543231 22
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhccc
Q 013835 382 VELAEAMEKEDGVTGAVKAFFKHYSR 407 (435)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~i~~~l~~ 407 (435)
++..+.+.+.-+++..++.+.++++.
T Consensus 342 ~~~~~~~~~~fs~~~~~~~~~~~y~~ 367 (398)
T cd03796 342 WSFHNRVKKMYSWEDVAKRTEKVYDR 367 (398)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 33334444445566555555555443
No 75
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.24 E-value=2e-09 Score=102.01 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=102.3
Q ss_pred CCcEEEeeCCCCCCChHHHHHHHHHHHHHh-----CCeEEEEcCCCCCCCCC------CCCCceEEcCCCCh-hhhcccc
Q 013835 240 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGLGNLA------EPKDSIYLLDNIPH-DWLFLQC 307 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~-----~~~~iv~~~~~~~~~~~------~~~~~v~~~~~~p~-~~~l~~~ 307 (435)
++.+++..|++..... ++.+++++... +.++++++++...+.+. ...+++.+.++... ..++..+
T Consensus 187 ~~~~~l~~g~~~~~kg---~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~a 263 (360)
T cd04951 187 DTFVILAVGRLVEAKD---YPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAA 263 (360)
T ss_pred CCEEEEEEeeCchhcC---cHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhh
Confidence 4577888888753222 22344444332 46777765443322221 24578999997644 3449999
Q ss_pred cEEEEeCC----chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc--CHHHHHHH
Q 013835 308 KAVVHHGG----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML--DPKVKERA 381 (435)
Q Consensus 308 ~l~I~hgG----~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll--~~~~~~~~ 381 (435)
|++|.-.. .+++.||+++|+|+|+. |...+...+++.|.. +... +.+++++++.+++ ++..++.+
T Consensus 264 d~~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~~g~~---~~~~--~~~~~~~~i~~ll~~~~~~~~~~ 334 (360)
T cd04951 264 DLFVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGDSGLI---VPIS--DPEALANKIDEILKMSGEERDII 334 (360)
T ss_pred ceEEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecCCceE---eCCC--CHHHHHHHHHHHHhCCHHHHHHH
Confidence 99997654 47899999999999964 444566666663433 4333 7899999999997 56677766
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhcc
Q 013835 382 VELAEAMEKEDGVTGAVKAFFKHYS 406 (435)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~i~~~l~ 406 (435)
.+..+...+.-+++..++.++++++
T Consensus 335 ~~~~~~~~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 335 GARRERIVKKFSINSIVQQWLTLYT 359 (360)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhh
Confidence 6664555566688888888887764
No 76
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.24 E-value=3e-09 Score=100.94 Aligned_cols=150 Identities=15% Similarity=0.131 Sum_probs=99.2
Q ss_pred cEEEeeCCCCCCChHHHHHHHHHHHHHh--CCeEEEEcCCCCCCCC-------CCCCCceEEcCCCChhhh---cccccE
Q 013835 242 PIYIGFGSLPVQEPEKMTQIIVEAFEQT--GQRGIINKGWGGLGNL-------AEPKDSIYLLDNIPHDWL---FLQCKA 309 (435)
Q Consensus 242 ~v~v~~Gs~~~~~~~~~~~~~~~~~~~~--~~~~iv~~~~~~~~~~-------~~~~~~v~~~~~~p~~~~---l~~~~l 309 (435)
..++..|++..... ++.++++++.. +.++++++++...+.. ....++|.+.++++++++ +.++|+
T Consensus 194 ~~i~~~G~~~~~Kg---~~~li~a~~~l~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~ 270 (363)
T cd04955 194 RYYLLVGRIVPENN---IDDLIEAFSKSNSGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAAL 270 (363)
T ss_pred cEEEEEecccccCC---HHHHHHHHHhhccCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCE
Confidence 44567788754332 33456666655 4677777654222211 134689999999999876 888999
Q ss_pred EEEeCCc-----hHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHH
Q 013835 310 VVHHGGA-----GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVE 383 (435)
Q Consensus 310 ~I~hgG~-----~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~ 383 (435)
++.++-. +++.||+++|+|+|+....+ +...++. .|. ..+.. +.+++++.+++ |++.+.++.+
T Consensus 271 ~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~--~g~-~~~~~----~~l~~~i~~l~~~~~~~~~~~~ 339 (363)
T cd04955 271 FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGD--KAI-YFKVG----DDLASLLEELEADPEEVSAMAK 339 (363)
T ss_pred EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecC--Cee-EecCc----hHHHHHHHHHHhCHHHHHHHHH
Confidence 9876543 68999999999999875443 2222333 343 33322 22999999999 8877777766
Q ss_pred HHHHhhc-cCcHHHHHHHHHHhc
Q 013835 384 LAEAMEK-EDGVTGAVKAFFKHY 405 (435)
Q Consensus 384 ~~~~~~~-~~~~~~~~~~i~~~l 405 (435)
.+++... .-+++..++.+++++
T Consensus 340 ~~~~~~~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 340 AARERIREKYTWEKIADQYEELY 362 (363)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHh
Confidence 6665544 458888888887765
No 77
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.23 E-value=3.6e-09 Score=100.29 Aligned_cols=157 Identities=18% Similarity=0.242 Sum_probs=107.1
Q ss_pred CCcEEEeeCCCCCCC-hHHHHHHHHHHHHHh--CCeEEEEcCCCCCCC---------CC--CCCCceEEcCC-CChhhh-
Q 013835 240 SKPIYIGFGSLPVQE-PEKMTQIIVEAFEQT--GQRGIINKGWGGLGN---------LA--EPKDSIYLLDN-IPHDWL- 303 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~-~~~~~~~~~~~~~~~--~~~~iv~~~~~~~~~---------~~--~~~~~v~~~~~-~p~~~~- 303 (435)
++.+++..|++.... .+.+++.+ ..+.+. +.++++.++...... +. .+.++|.+.+. +|.+++
T Consensus 184 ~~~~i~~~G~~~~~K~~~~ll~a~-~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~ 262 (366)
T cd03822 184 GRPVLLTFGLLRPYKGLELLLEAL-PLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELP 262 (366)
T ss_pred CCeEEEEEeeccCCCCHHHHHHHH-HHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHH
Confidence 456777788875433 33444433 333332 456666554322111 11 24578988865 888776
Q ss_pred --cccccEEEEe------CCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-C
Q 013835 304 --FLQCKAVVHH------GGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-D 374 (435)
Q Consensus 304 --l~~~~l~I~h------gG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~ 374 (435)
++.+|++|.. |..+++.||+++|+|+|+.+..+ ...+...+.|+ .++.. +.+++++++.+++ |
T Consensus 263 ~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~~~g~-~~~~~--d~~~~~~~l~~l~~~ 334 (366)
T cd03822 263 ELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDGGTGL-LVPPG--DPAALAEAIRRLLAD 334 (366)
T ss_pred HHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeCCCcE-EEcCC--CHHHHHHHHHHHHcC
Confidence 8999999943 33468999999999999776543 34455667785 56544 5899999999999 8
Q ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHhc
Q 013835 375 PKVKERAVELAEAMEKEDGVTGAVKAFFKHY 405 (435)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 405 (435)
++.+.++.+.++.......++..++.+.+++
T Consensus 335 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 365 (366)
T cd03822 335 PELAQALRARAREYARAMSWERVAERYLRLL 365 (366)
T ss_pred hHHHHHHHHHHHHHHhhCCHHHHHHHHHHHh
Confidence 8888888887777776688888888888765
No 78
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.23 E-value=1.5e-09 Score=103.36 Aligned_cols=156 Identities=13% Similarity=0.107 Sum_probs=104.1
Q ss_pred CcEEEeeCCCCCC-ChHHHHHHHHHHHHHh-CCeEEEEcCCCCCCCC----CC--CCCceEEcCCCChhhh---cccccE
Q 013835 241 KPIYIGFGSLPVQ-EPEKMTQIIVEAFEQT-GQRGIINKGWGGLGNL----AE--PKDSIYLLDNIPHDWL---FLQCKA 309 (435)
Q Consensus 241 ~~v~v~~Gs~~~~-~~~~~~~~~~~~~~~~-~~~~iv~~~~~~~~~~----~~--~~~~v~~~~~~p~~~~---l~~~~l 309 (435)
+.+++..|++... ..+.+++.+....+.. +.++++++.+...+.+ .+ ..+++.+.+++|.+++ +..+|+
T Consensus 188 ~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~ 267 (367)
T cd05844 188 PPRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARI 267 (367)
T ss_pred CcEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCE
Confidence 4566777877542 2233333222222221 4556655533221211 12 4689999999998777 899999
Q ss_pred EEEeC----------CchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHH
Q 013835 310 VVHHG----------GAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVK 378 (435)
Q Consensus 310 ~I~hg----------G~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~ 378 (435)
+|..+ -.+++.||+++|+|+|+.+.. .++..+.+.+.|+ .++.. +.++++++|.+++ |++.+
T Consensus 268 ~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~~~g~-~~~~~--d~~~l~~~i~~l~~~~~~~ 340 (367)
T cd05844 268 FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDGETGL-LVPEG--DVAALAAALGRLLADPDLR 340 (367)
T ss_pred EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecCCeeE-EECCC--CHHHHHHHHHHHHcCHHHH
Confidence 98643 247999999999999976654 3677777788886 66544 6799999999999 88877
Q ss_pred HHHHHHHHHhh-ccCcHHHHHHHHHH
Q 013835 379 ERAVELAEAME-KEDGVTGAVKAFFK 403 (435)
Q Consensus 379 ~~~~~~~~~~~-~~~~~~~~~~~i~~ 403 (435)
+++.+.+++.. +.-.++..++.+++
T Consensus 341 ~~~~~~a~~~~~~~~s~~~~~~~l~~ 366 (367)
T cd05844 341 ARMGAAGRRRVEERFDLRRQTAKLEA 366 (367)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 77776666544 44577777776654
No 79
>PLN00142 sucrose synthase
Probab=99.17 E-value=3.4e-08 Score=99.65 Aligned_cols=159 Identities=13% Similarity=-0.001 Sum_probs=103.4
Q ss_pred CCcEEEeeCCCCCCChHHHHHHHHHHHHHh-----CCeEEEEcCCCCC------CC------C------CCCCCceEEcC
Q 013835 240 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGL------GN------L------AEPKDSIYLLD 296 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~-----~~~~iv~~~~~~~------~~------~------~~~~~~v~~~~ 296 (435)
++.++++.|.+..... +..+++++... +.++++++++.+. +. + ..+.++|.+.+
T Consensus 572 ~kpvIl~VGRL~~~KG---id~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG 648 (815)
T PLN00142 572 KKPIIFSMARLDRVKN---LTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIA 648 (815)
T ss_pred CCcEEEEEecCcccCC---HHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcC
Confidence 3467888898864332 33455555432 3567777654110 00 1 12457888776
Q ss_pred C----CChhhhc---c-cccEEEEeC---Cc-hHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHH
Q 013835 297 N----IPHDWLF---L-QCKAVVHHG---GA-GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPK 364 (435)
Q Consensus 297 ~----~p~~~~l---~-~~~l~I~hg---G~-~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~ 364 (435)
. .+..++. + ++|+||.-+ |. .++.||+++|+|+|+... ......++....|+ .+++. ++++
T Consensus 649 ~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV~dG~tG~-LV~P~--D~ea 721 (815)
T PLN00142 649 AQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEIIVDGVSGF-HIDPY--HGDE 721 (815)
T ss_pred CcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCCCcEE-EeCCC--CHHH
Confidence 4 3344553 3 578998764 32 589999999999996544 44667787777896 77655 6788
Q ss_pred HHHHHHH----hc-CHHHHHHHHHHHHHhh-ccCcHHHHHHHHHHhcccc
Q 013835 365 LINAINF----ML-DPKVKERAVELAEAME-KEDGVTGAVKAFFKHYSRS 408 (435)
Q Consensus 365 l~~~i~~----ll-~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~~ 408 (435)
++++|.+ ++ |++.++++.+.+++.. +.-+++..++.+.++....
T Consensus 722 LA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rll~L~~~~ 771 (815)
T PLN00142 722 AANKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYAERLLTLGGVY 771 (815)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Confidence 8888754 56 8999998888765543 4568888888888776543
No 80
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.17 E-value=3.6e-09 Score=99.20 Aligned_cols=148 Identities=11% Similarity=0.048 Sum_probs=98.1
Q ss_pred CcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCC----CC---CCCceEEcCCCChhhh---cccccEE
Q 013835 241 KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNL----AE---PKDSIYLLDNIPHDWL---FLQCKAV 310 (435)
Q Consensus 241 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~----~~---~~~~v~~~~~~p~~~~---l~~~~l~ 310 (435)
+.+++..|.+..... .+.++++++..+.++++.+.+...+.. .+ ..+++.+.+++++.++ ++.+|++
T Consensus 171 ~~~i~~~Gr~~~~Kg---~~~li~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~ 247 (335)
T cd03802 171 GDYLLFLGRISPEKG---PHLAIRAARRAGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARAL 247 (335)
T ss_pred CCEEEEEEeeccccC---HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEE
Confidence 345566777743322 344667777778888877655332211 11 3589999999998765 8999999
Q ss_pred EEeC----C-chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHH
Q 013835 311 VHHG----G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVEL 384 (435)
Q Consensus 311 I~hg----G-~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~ 384 (435)
+... | ..++.||+++|+|+|+... ..+...+++...|+ .++. .++++++|.+++ .+. +++
T Consensus 248 v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i~~~~~g~-l~~~----~~~l~~~l~~l~~~~~--~~~--- 313 (335)
T cd03802 248 LFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVVEDGVTGF-LVDS----VEELAAAVARADRLDR--AAC--- 313 (335)
T ss_pred EeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhheeCCCcEE-EeCC----HHHHHHHHHHHhccHH--HHH---
Confidence 8543 3 3689999999999996554 34556666656785 5542 899999999987 432 222
Q ss_pred HHHhhccCcHHHHHHHHHHhc
Q 013835 385 AEAMEKEDGVTGAVKAFFKHY 405 (435)
Q Consensus 385 ~~~~~~~~~~~~~~~~i~~~l 405 (435)
.+...+.-+++..++.+++++
T Consensus 314 ~~~~~~~~s~~~~~~~~~~~y 334 (335)
T cd03802 314 RRRAERRFSAARMVDDYLALY 334 (335)
T ss_pred HHHHHHhCCHHHHHHHHHHHh
Confidence 223335557777777777654
No 81
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.16 E-value=9.7e-09 Score=96.97 Aligned_cols=157 Identities=16% Similarity=0.113 Sum_probs=99.1
Q ss_pred CCcEEEeeCCCCCCC-hHHHHHHHHHHHHH-hCCeEEEEcCCCCCCC-------CCCCCCceEEcCCCCh-hhhcccccE
Q 013835 240 SKPIYIGFGSLPVQE-PEKMTQIIVEAFEQ-TGQRGIINKGWGGLGN-------LAEPKDSIYLLDNIPH-DWLFLQCKA 309 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~-~~~~~~~~~~~~~~-~~~~~iv~~~~~~~~~-------~~~~~~~v~~~~~~p~-~~~l~~~~l 309 (435)
++.+++..|+..... .+.+++.+....++ .+.++++.+.+..... ...+.+++.+.+.... ..+++.+|+
T Consensus 192 ~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi 271 (365)
T cd03807 192 DTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALLNALDV 271 (365)
T ss_pred CCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCE
Confidence 346778888875432 23333322222122 1456666654332211 1124567888775432 344999999
Q ss_pred EEEeCCc----hHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHH
Q 013835 310 VVHHGGA----GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVEL 384 (435)
Q Consensus 310 ~I~hgG~----~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~ 384 (435)
+|..+.. +++.||+++|+|+|+.. ...+...+.+ .|. .++.+ +.+++.++|.+++ |++.+....+.
T Consensus 272 ~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~~~--~g~-~~~~~--~~~~l~~~i~~l~~~~~~~~~~~~~ 342 (365)
T cd03807 272 FVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELVGD--TGF-LVPPG--DPEALAEAIEALLADPALRQALGEA 342 (365)
T ss_pred EEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHhhc--CCE-EeCCC--CHHHHHHHHHHHHhChHHHHHHHHH
Confidence 9977654 89999999999999754 3445666666 554 45444 6899999999999 87766666555
Q ss_pred HHHhh-ccCcHHHHHHHHHHhc
Q 013835 385 AEAME-KEDGVTGAVKAFFKHY 405 (435)
Q Consensus 385 ~~~~~-~~~~~~~~~~~i~~~l 405 (435)
+++.. +.-.++..++.+.+.+
T Consensus 343 ~~~~~~~~~s~~~~~~~~~~~y 364 (365)
T cd03807 343 ARERIEENFSIEAMVEAYEELY 364 (365)
T ss_pred HHHHHHHhCCHHHHHHHHHHHh
Confidence 55543 4468888888877654
No 82
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.14 E-value=3.2e-09 Score=100.61 Aligned_cols=137 Identities=10% Similarity=0.047 Sum_probs=87.7
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHHHHHHh-----CCeEEEEcCCCCCCCC------CCCCCceEEcCCCCh-hhhccc
Q 013835 239 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGLGNL------AEPKDSIYLLDNIPH-DWLFLQ 306 (435)
Q Consensus 239 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~-----~~~~iv~~~~~~~~~~------~~~~~~v~~~~~~p~-~~~l~~ 306 (435)
.++.+++..|++..... ++.+++++..+ +.++++++.+...+.+ ....+++.+.++..+ .+++..
T Consensus 190 ~~~~~i~~vGr~~~~Kg---~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 266 (358)
T cd03812 190 EDKFVIGHVGRFSEQKN---HEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQA 266 (358)
T ss_pred CCCEEEEEEeccccccC---hHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh
Confidence 34577888888754332 23344444332 4567766543322111 134678999998432 334999
Q ss_pred ccEEEEeC----CchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHH
Q 013835 307 CKAVVHHG----GAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERA 381 (435)
Q Consensus 307 ~~l~I~hg----G~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~ 381 (435)
||++|... -.++++||+++|+|+|+....+ ....++. +.|. +..++ ++++++++|.+++ |++.+++.
T Consensus 267 adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~-~~~~--~~~~~-~~~~~a~~i~~l~~~~~~~~~~ 338 (358)
T cd03812 267 MDVFLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD-LVKF--LSLDE-SPEIWAEEILKLKSEDRRERSS 338 (358)
T ss_pred cCEEEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc-CccE--EeCCC-CHHHHHHHHHHHHhCcchhhhh
Confidence 99999764 3589999999999999765443 4455555 5563 33332 5799999999999 88877766
Q ss_pred HHHHH
Q 013835 382 VELAE 386 (435)
Q Consensus 382 ~~~~~ 386 (435)
...++
T Consensus 339 ~~~~~ 343 (358)
T cd03812 339 ESIKK 343 (358)
T ss_pred hhhhh
Confidence 54333
No 83
>PLN02275 transferase, transferring glycosyl groups
Probab=99.13 E-value=3e-09 Score=101.21 Aligned_cols=95 Identities=15% Similarity=0.044 Sum_probs=67.4
Q ss_pred CCeEEEEcCCCCCCCCCC-----CCCceEEcC-CCChhhh---cccccEEEEe--C--C---chHHHHHHHhCCCEEeec
Q 013835 270 GQRGIINKGWGGLGNLAE-----PKDSIYLLD-NIPHDWL---FLQCKAVVHH--G--G---AGTTAAGLRAACPTTIVP 333 (435)
Q Consensus 270 ~~~~iv~~~~~~~~~~~~-----~~~~v~~~~-~~p~~~~---l~~~~l~I~h--g--G---~~s~~Eal~~G~P~l~~P 333 (435)
+.++++++.+...+.+.+ .-+|+.+.. |+|.+++ ++.+|++|.. . | .+++.||+++|+|+|+..
T Consensus 261 ~i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~ 340 (371)
T PLN02275 261 RLLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVS 340 (371)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEec
Confidence 356777665443333321 125677655 7998887 9999999842 1 1 368999999999999765
Q ss_pred CCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013835 334 FFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 373 (435)
Q Consensus 334 ~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll 373 (435)
. ..+.+.+++.+.|+ .++ +.++++++|.+++
T Consensus 341 ~----gg~~eiv~~g~~G~-lv~----~~~~la~~i~~l~ 371 (371)
T PLN02275 341 Y----SCIGELVKDGKNGL-LFS----SSSELADQLLELL 371 (371)
T ss_pred C----CChHHHccCCCCeE-EEC----CHHHHHHHHHHhC
Confidence 3 34778888888996 664 4799999998875
No 84
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.11 E-value=1.7e-07 Score=89.90 Aligned_cols=159 Identities=16% Similarity=0.158 Sum_probs=104.5
Q ss_pred CCcEEEeeCCCCCCChHHHHHHHHHHHHHh--CCeEEEEcCCCCCCCC----C----CC---CCceEE-cCCCChhhh--
Q 013835 240 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT--GQRGIINKGWGGLGNL----A----EP---KDSIYL-LDNIPHDWL-- 303 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~--~~~~iv~~~~~~~~~~----~----~~---~~~v~~-~~~~p~~~~-- 303 (435)
++.+++..|++.... -++.++++++.. +.++++..++.+...+ . ++ .+++.+ .++++..++
T Consensus 200 ~~~~i~~~Grl~~~K---g~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 276 (388)
T TIGR02149 200 SRPYILFVGRITRQK---GVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVE 276 (388)
T ss_pred CceEEEEEccccccc---CHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHH
Confidence 345777888875432 234455666554 4566665544332111 1 11 234654 467887776
Q ss_pred -cccccEEEEeC----CchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCC----HHHHHHHHHHhc-
Q 013835 304 -FLQCKAVVHHG----GAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFS----LPKLINAINFML- 373 (435)
Q Consensus 304 -l~~~~l~I~hg----G~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~----~~~l~~~i~~ll- 373 (435)
+..+|++|.-+ ...+++||+++|+|+|+... ....+.++..+.|. .++.++.+ .+++.++|.+++
T Consensus 277 ~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~~~G~-~~~~~~~~~~~~~~~l~~~i~~l~~ 351 (388)
T TIGR02149 277 LLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDGETGF-LVPPDNSDADGFQAELAKAINILLA 351 (388)
T ss_pred HHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCCCceE-EcCCCCCcccchHHHHHHHHHHHHh
Confidence 89999999754 23578999999999997553 34667787777886 77655321 289999999999
Q ss_pred CHHHHHHHHHHHHHhh-ccCcHHHHHHHHHHhcc
Q 013835 374 DPKVKERAVELAEAME-KEDGVTGAVKAFFKHYS 406 (435)
Q Consensus 374 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~ 406 (435)
|++.++++.+.+++.. +.-+++..++.+.++++
T Consensus 352 ~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~y~ 385 (388)
T TIGR02149 352 DPELAKKMGIAGRKRAEEEFSWGSIAKKTVEMYR 385 (388)
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9888887776666543 44577777777766654
No 85
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.11 E-value=5.1e-09 Score=99.22 Aligned_cols=154 Identities=16% Similarity=0.155 Sum_probs=101.9
Q ss_pred CCCcEEEeeCCCCCCC-hHHHHHHHHHHHHHh--CCeEEEEcCCCCCCC-C------CCCCCceEEcCCCChhhh---cc
Q 013835 239 GSKPIYIGFGSLPVQE-PEKMTQIIVEAFEQT--GQRGIINKGWGGLGN-L------AEPKDSIYLLDNIPHDWL---FL 305 (435)
Q Consensus 239 ~~~~v~v~~Gs~~~~~-~~~~~~~~~~~~~~~--~~~~iv~~~~~~~~~-~------~~~~~~v~~~~~~p~~~~---l~ 305 (435)
.++.+++..|++.... .+.+++.+ ..+... +.++++.+....... . ....+++.+.+++|..++ +.
T Consensus 193 ~~~~~i~~~G~~~~~K~~~~~l~~~-~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 271 (365)
T cd03809 193 LPRPYFLYVGTIEPRKNLERLLEAF-ARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYR 271 (365)
T ss_pred CCCCeEEEeCCCccccCHHHHHHHH-HHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHh
Confidence 3456777888875432 33333322 333222 256666654332211 1 235789999999998876 89
Q ss_pred cccEEEEeC----CchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHH
Q 013835 306 QCKAVVHHG----GAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKER 380 (435)
Q Consensus 306 ~~~l~I~hg----G~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~ 380 (435)
.+|++|... ..+++.||+++|+|+|+..... ..+.+.+. |. .++.. +.+++.++|.+++ |++.+..
T Consensus 272 ~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~~--~~-~~~~~--~~~~~~~~i~~l~~~~~~~~~ 342 (365)
T cd03809 272 GARAFVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGDA--AL-YFDPL--DPEALAAAIERLLEDPALREE 342 (365)
T ss_pred hhhhhcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecCc--ee-eeCCC--CHHHHHHHHHHHhcCHHHHHH
Confidence 999988553 2468999999999999865432 22223333 33 34333 7899999999999 9999999
Q ss_pred HHHHHHHhhccCcHHHHHHHHH
Q 013835 381 AVELAEAMEKEDGVTGAVKAFF 402 (435)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~i~ 402 (435)
+.+.+++....-.++..++.+.
T Consensus 343 ~~~~~~~~~~~~sw~~~~~~~~ 364 (365)
T cd03809 343 LRERGLARAKRFSWEKTARRTL 364 (365)
T ss_pred HHHHHHHHHHhCCHHHHHHHHh
Confidence 8888877777778887777654
No 86
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.10 E-value=5.1e-08 Score=98.40 Aligned_cols=158 Identities=12% Similarity=-0.034 Sum_probs=103.4
Q ss_pred CCcEEEeeCCCCCCChHHHHHHHHHHHHHh-----CCeEEEEcCCCCC------CC------C------CCCCCceEEcC
Q 013835 240 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGL------GN------L------AEPKDSIYLLD 296 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~-----~~~~iv~~~~~~~------~~------~------~~~~~~v~~~~ 296 (435)
++.++++.|.+.... -+..+++++... +.++++++|+... +. + ..+.++|.+.+
T Consensus 549 ~kpiIl~VGRL~~~K---Gid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG 625 (784)
T TIGR02470 549 NKPIIFSMARLDRVK---NLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIG 625 (784)
T ss_pred CCcEEEEEeCCCccC---CHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEcc
Confidence 346778888886433 234456666432 3566666654321 00 0 12457899988
Q ss_pred CC-Chh---hhcc----cccEEEEeCC----chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHH
Q 013835 297 NI-PHD---WLFL----QCKAVVHHGG----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPK 364 (435)
Q Consensus 297 ~~-p~~---~~l~----~~~l~I~hgG----~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~ 364 (435)
+. +.. +++. ++|+||.-+- ..+++||+++|+|+|+.. ....+..++....|+ .+++. ++++
T Consensus 626 ~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~----~GG~~EiV~dg~tGf-LVdp~--D~ea 698 (784)
T TIGR02470 626 AQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATR----FGGPLEIIQDGVSGF-HIDPY--HGEE 698 (784)
T ss_pred CcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcC----CCCHHHHhcCCCcEE-EeCCC--CHHH
Confidence 75 432 3332 4578886652 259999999999999654 445777888878897 77655 6789
Q ss_pred HHHHHHHh----c-CHHHHHHHHHHHHHh-hccCcHHHHHHHHHHhccc
Q 013835 365 LINAINFM----L-DPKVKERAVELAEAM-EKEDGVTGAVKAFFKHYSR 407 (435)
Q Consensus 365 l~~~i~~l----l-~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~l~~ 407 (435)
++++|.++ + |++.++++.+.+.+. .+.-+++..++.+.++...
T Consensus 699 LA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~~~ 747 (784)
T TIGR02470 699 AAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERLLTLAGI 747 (784)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 99998765 4 888888877776553 3456888888888776643
No 87
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.09 E-value=4e-09 Score=99.72 Aligned_cols=151 Identities=17% Similarity=0.132 Sum_probs=97.0
Q ss_pred CCcEEEeeCCCCCC-ChHHHHHHHHHHHHHh--CCeEEEEcCCCCCCCCC------CCCCceEEcCCCChhhh---cccc
Q 013835 240 SKPIYIGFGSLPVQ-EPEKMTQIIVEAFEQT--GQRGIINKGWGGLGNLA------EPKDSIYLLDNIPHDWL---FLQC 307 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~-~~~~~~~~~~~~~~~~--~~~~iv~~~~~~~~~~~------~~~~~v~~~~~~p~~~~---l~~~ 307 (435)
++.+++..|+.... ..+.+++ +++.+.+. +..+++.+.+...+.+. ..+++|.+.++++..++ ++++
T Consensus 178 ~~~~i~~~g~~~~~k~~~~l~~-~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a 256 (355)
T cd03799 178 EPLRILSVGRLVEKKGLDYLLE-ALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAA 256 (355)
T ss_pred CCeEEEEEeeeccccCHHHHHH-HHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhC
Confidence 34667778887432 2233333 22333332 45566655433222111 24689999999998777 8999
Q ss_pred cEEEEe----------CCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHH
Q 013835 308 KAVVHH----------GGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPK 376 (435)
Q Consensus 308 ~l~I~h----------gG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~ 376 (435)
|+++.. |..+++.||+++|+|+|+.+... ....++....|. .++.. +.++++++|.+++ |+.
T Consensus 257 di~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~~~g~-~~~~~--~~~~l~~~i~~~~~~~~ 329 (355)
T cd03799 257 DLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDGETGL-LVPPG--DPEALADAIERLLDDPE 329 (355)
T ss_pred CEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCCCceE-EeCCC--CHHHHHHHHHHHHhCHH
Confidence 999973 33479999999999999765432 345666666886 56543 7899999999999 887
Q ss_pred HHHHHHHHHHHhh-ccCcHHHHH
Q 013835 377 VKERAVELAEAME-KEDGVTGAV 398 (435)
Q Consensus 377 ~~~~~~~~~~~~~-~~~~~~~~~ 398 (435)
.+.++.+.+++.. +.-.++..+
T Consensus 330 ~~~~~~~~a~~~~~~~~s~~~~~ 352 (355)
T cd03799 330 LRREMGEAGRARVEEEFDIRKQA 352 (355)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHh
Confidence 7776666555543 334554443
No 88
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.08 E-value=3.5e-09 Score=100.43 Aligned_cols=158 Identities=9% Similarity=0.048 Sum_probs=102.7
Q ss_pred CCcEEEeeCCCCCCChHHHHHHHHHHHHHh--CCeEEEEcCCCCCCCCC------CCCCceEEcCCCCh--hhh---ccc
Q 013835 240 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT--GQRGIINKGWGGLGNLA------EPKDSIYLLDNIPH--DWL---FLQ 306 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~--~~~~iv~~~~~~~~~~~------~~~~~v~~~~~~p~--~~~---l~~ 306 (435)
++.+++..|++.... .+-+..+++++... +.++++++.+...+.+. .++++|.+.++++. +.+ ++.
T Consensus 179 ~~~~i~~~Grl~~~~-~k~~~~l~~a~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~ 257 (359)
T PRK09922 179 KPAVFLYVGRLKFEG-QKNVKELFDGLSQTTGEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKN 257 (359)
T ss_pred CCcEEEEEEEEeccc-CcCHHHHHHHHHhhCCCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhc
Confidence 346677777764211 11233355665554 45677666443322221 25689999999854 444 678
Q ss_pred ccEEEEeCC----chHHHHHHHhCCCEEeec-CCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHH--HH
Q 013835 307 CKAVVHHGG----AGTTAAGLRAACPTTIVP-FFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPK--VK 378 (435)
Q Consensus 307 ~~l~I~hgG----~~s~~Eal~~G~P~l~~P-~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~--~~ 378 (435)
+|++|.... .+++.||+++|+|+|+.. .. .....++....|. .++.. +.++++++|.+++ |++ ..
T Consensus 258 ~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~----g~~eiv~~~~~G~-lv~~~--d~~~la~~i~~l~~~~~~~~~ 330 (359)
T PRK09922 258 VSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMS----GPRDIIKPGLNGE-LYTPG--NIDEFVGKLNKVISGEVKYQH 330 (359)
T ss_pred CcEEEECCcccCcChHHHHHHHcCCCEEEeCCCC----ChHHHccCCCceE-EECCC--CHHHHHHHHHHHHhCcccCCH
Confidence 999997543 489999999999999664 33 2335676667786 66544 7899999999999 876 35
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhc
Q 013835 379 ERAVELAEAMEKEDGVTGAVKAFFKHY 405 (435)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~i~~~l 405 (435)
.+..+..+++....-..+.++.+++.+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (359)
T PRK09922 331 DAIPNSIERFYEVLYFKNLNNALFSKL 357 (359)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 555565666666555566666666544
No 89
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.07 E-value=7.2e-08 Score=91.00 Aligned_cols=131 Identities=13% Similarity=0.192 Sum_probs=82.1
Q ss_pred CCcEEEeeCCCC--CCChHHHHHHHHHHHHHhCCeEEEEcCCCCC-C-----CCCC-C--CCceEEcCCCChhhh---cc
Q 013835 240 SKPIYIGFGSLP--VQEPEKMTQIIVEAFEQTGQRGIINKGWGGL-G-----NLAE-P--KDSIYLLDNIPHDWL---FL 305 (435)
Q Consensus 240 ~~~v~v~~Gs~~--~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~-~-----~~~~-~--~~~v~~~~~~p~~~~---l~ 305 (435)
++.++|++=... .....+.+..+++++.+.+..+++.....+. + .+.+ . .+++.+.+.++..++ ++
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~ 280 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLK 280 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHH
Confidence 357667765432 3344455777888888776444444211111 1 1111 1 468999998888776 89
Q ss_pred cccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHHHHHH
Q 013835 306 QCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPKVKERA 381 (435)
Q Consensus 306 ~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll~~~~~~~~ 381 (435)
.|+++|+.++.+. .||.+.|+|+|.+-. .+ .-++..+..+ .+ ..+++++.+++.++++++++++.
T Consensus 281 ~a~~vitdSSggi-~EA~~lg~Pvv~l~~---R~---e~~~~g~nvl-~v---g~~~~~I~~a~~~~~~~~~~~~~ 345 (365)
T TIGR03568 281 NADAVIGNSSSGI-IEAPSFGVPTINIGT---RQ---KGRLRADSVI-DV---DPDKEEIVKAIEKLLDPAFKKSL 345 (365)
T ss_pred hCCEEEEcChhHH-HhhhhcCCCEEeecC---Cc---hhhhhcCeEE-Ee---CCCHHHHHHHHHHHhChHHHHHH
Confidence 9999999996655 999999999997752 11 1222222222 23 22689999999996576655544
No 90
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.06 E-value=1.1e-07 Score=95.93 Aligned_cols=158 Identities=14% Similarity=0.081 Sum_probs=99.7
Q ss_pred CcEEEeeCCCCCCC-hHHHHHHHHHHHHHh-CCeEEEEcCCCCCCCCC------CCCCceEEcCCCChhh-hcccccEEE
Q 013835 241 KPIYIGFGSLPVQE-PEKMTQIIVEAFEQT-GQRGIINKGWGGLGNLA------EPKDSIYLLDNIPHDW-LFLQCKAVV 311 (435)
Q Consensus 241 ~~v~v~~Gs~~~~~-~~~~~~~~~~~~~~~-~~~~iv~~~~~~~~~~~------~~~~~v~~~~~~p~~~-~l~~~~l~I 311 (435)
..++++.|.+.... ...+++.+.+..++. +.++++++++...+.+. .+.++|.+.+|.+... ++..+|++|
T Consensus 517 ~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv~V 596 (694)
T PRK15179 517 RFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAFL 596 (694)
T ss_pred CeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCEEE
Confidence 35667788875432 233444333333333 46677666443322221 2458999999986433 399999999
Q ss_pred Ee---CC-chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-----CHHHHHHHH
Q 013835 312 HH---GG-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-----DPKVKERAV 382 (435)
Q Consensus 312 ~h---gG-~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-----~~~~~~~~~ 382 (435)
.- .| .++++||+++|+|+|+.... .....+++...|+ .++..+.+.+++.+++.+++ ++.++++++
T Consensus 597 lpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg~~Gl-Lv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar 671 (694)
T PRK15179 597 LLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEGVTGL-TLPADTVTAPDVAEALARIHDMCAADPGIARKAA 671 (694)
T ss_pred eccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCCCCEE-EeCCCCCChHHHHHHHHHHHhChhccHHHHHHHH
Confidence 74 34 38999999999999976543 4667777777897 77776666666666665544 455555443
Q ss_pred HHHHHhhccCcHHHHHHHHHHhcc
Q 013835 383 ELAEAMEKEDGVTGAVKAFFKHYS 406 (435)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~i~~~l~ 406 (435)
+ ...+.-+++..++.+++++.
T Consensus 672 ~---~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 672 D---WASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred H---HHHHhCCHHHHHHHHHHHhC
Confidence 3 23344577777777777653
No 91
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.00 E-value=4.5e-08 Score=91.82 Aligned_cols=135 Identities=18% Similarity=0.133 Sum_probs=88.3
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHHHHHHh-----CCeEEEEcCCCCCCCC------CCCCCceEEcCCCCh-hhhccc
Q 013835 239 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGLGNL------AEPKDSIYLLDNIPH-DWLFLQ 306 (435)
Q Consensus 239 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~-----~~~~iv~~~~~~~~~~------~~~~~~v~~~~~~p~-~~~l~~ 306 (435)
.++.+++..|++..... .+.++++++.. +.++++++.+...+.+ ....+++.+.++.+. .+++..
T Consensus 187 ~~~~~i~~~g~~~~~k~---~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 263 (353)
T cd03811 187 PDGPVILAVGRLSPQKG---FDTLIRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKA 263 (353)
T ss_pred CCceEEEEEecchhhcC---hHHHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHh
Confidence 34577888888753222 23344444432 4566666543322211 124578999998754 234899
Q ss_pred ccEEEEeC----CchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHH---HHHHHHhc-CHHHH
Q 013835 307 CKAVVHHG----GAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKL---INAINFML-DPKVK 378 (435)
Q Consensus 307 ~~l~I~hg----G~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l---~~~i~~ll-~~~~~ 378 (435)
+|++|... ..+++.||+++|+|+|+.... .....+++.+.|+ .++.. +.+.+ .+++..++ +++.+
T Consensus 264 ~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~~~g~-~~~~~--~~~~~~~~~~~i~~~~~~~~~~ 336 (353)
T cd03811 264 ADLFVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDGENGL-LVPVG--DEAALAAAALALLDLLLDPELR 336 (353)
T ss_pred CCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCCCceE-EECCC--CHHHHHHHHHHHHhccCChHHH
Confidence 99999653 347899999999999965433 5677888888896 66544 56777 67777777 77777
Q ss_pred HHHHH
Q 013835 379 ERAVE 383 (435)
Q Consensus 379 ~~~~~ 383 (435)
.++++
T Consensus 337 ~~~~~ 341 (353)
T cd03811 337 ERLAA 341 (353)
T ss_pred HHHHH
Confidence 76665
No 92
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.91 E-value=2.3e-07 Score=91.38 Aligned_cols=158 Identities=13% Similarity=0.115 Sum_probs=96.7
Q ss_pred CCcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCC--CCCC----CCCCCceEEcCCCChhh---hcccccEE
Q 013835 240 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGG--LGNL----AEPKDSIYLLDNIPHDW---LFLQCKAV 310 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~--~~~~----~~~~~~v~~~~~~p~~~---~l~~~~l~ 310 (435)
++.+++..|++.....-..+-..+..+.+.+.++++.+.+.. .+.+ .+.+.++.+....+... +++.+|++
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~ 369 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAGADFI 369 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCCEE
Confidence 457788889886543322222222333333577777764421 1111 12466787777666654 38999999
Q ss_pred EEeC---Cc-hHHHHHHHhCCCEEeecCCCChhhHHHHHHHc------CCCCCCCCCCCCCHHHHHHHHHHhc-----CH
Q 013835 311 VHHG---GA-GTTAAGLRAACPTTIVPFFGDQPFWGERVHAR------GVGPPPIPVDEFSLPKLINAINFML-----DP 375 (435)
Q Consensus 311 I~hg---G~-~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~------g~G~~~l~~~~~~~~~l~~~i~~ll-----~~ 375 (435)
+.-. |. .+.+||+++|+|.|+....+ ....+++. +.|+ .++.. ++++++++|.+++ |+
T Consensus 370 l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~~~G~-l~~~~--d~~~la~~i~~~l~~~~~~~ 442 (473)
T TIGR02095 370 LMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAESGTGF-LFEEY--DPGALLAALSRALRLYRQDP 442 (473)
T ss_pred EeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCCCceE-EeCCC--CHHHHHHHHHHHHHHHhcCH
Confidence 9754 32 48899999999999765443 33344443 7786 56544 6899999998866 34
Q ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHhcc
Q 013835 376 KVKERAVELAEAMEKEDGVTGAVKAFFKHYS 406 (435)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 406 (435)
+.++++.+.+ ..+.-++++.++..+++++
T Consensus 443 ~~~~~~~~~~--~~~~fsw~~~a~~~~~~Y~ 471 (473)
T TIGR02095 443 SLWEALQKNA--MSQDFSWDKSAKQYVELYR 471 (473)
T ss_pred HHHHHHHHHH--hccCCCcHHHHHHHHHHHH
Confidence 4444443322 1234588888888877654
No 93
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.89 E-value=1.4e-08 Score=93.90 Aligned_cols=157 Identities=13% Similarity=0.073 Sum_probs=102.5
Q ss_pred CCcEEEeeCCCCCCChHHHHHHHHHHHHHhC---CeEEEEcCCCCCCCCCC-C--CCceEEcCCCChhhhcccccEEEEe
Q 013835 240 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTG---QRGIINKGWGGLGNLAE-P--KDSIYLLDNIPHDWLFLQCKAVVHH 313 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~---~~~iv~~~~~~~~~~~~-~--~~~v~~~~~~p~~~~l~~~~l~I~h 313 (435)
+++|.+--||-... ....+..++++..... ..+++.. ..+.+.+.+ . ...+.+.+ ...+++..||++|+.
T Consensus 167 ~~~I~llPGSR~~E-i~~llP~~~~aa~~L~~~~~~~~i~~-a~~~~~i~~~~~~~~~~~~~~--~~~~~m~~aDlal~~ 242 (347)
T PRK14089 167 EGTIAFMPGSRKSE-IKRLMPIFKELAKKLEGKEKILVVPS-FFKGKDLKEIYGDISEFEISY--DTHKALLEAEFAFIC 242 (347)
T ss_pred CCEEEEECCCCHHH-HHHHHHHHHHHHHHHhhcCcEEEEeC-CCcHHHHHHHHhcCCCcEEec--cHHHHHHhhhHHHhc
Confidence 36888999987422 2234454445554432 3344443 222222111 1 11333332 334569999999999
Q ss_pred CCchHHHHHHHhCCCEEee-cCCCChhhHHHHHH---HcCCCCCCC-------------CCCCCCHHHHHHHHHHhcCHH
Q 013835 314 GGAGTTAAGLRAACPTTIV-PFFGDQPFWGERVH---ARGVGPPPI-------------PVDEFSLPKLINAINFMLDPK 376 (435)
Q Consensus 314 gG~~s~~Eal~~G~P~l~~-P~~~dQ~~na~~v~---~~g~G~~~l-------------~~~~~~~~~l~~~i~~ll~~~ 376 (435)
+|..|+ |++.+|+|+|+. ....-|..||+++. ..|++- .+ .+++.|++.+.+++.+.-..+
T Consensus 243 SGT~TL-E~al~g~P~Vv~Yk~~~lty~iak~lv~~~~igL~N-ii~~~~~~~~vvPEllQ~~~t~~~la~~i~~~~~~~ 320 (347)
T PRK14089 243 SGTATL-EAALIGTPFVLAYKAKAIDYFIAKMFVKLKHIGLAN-IFFDFLGKEPLHPELLQEFVTVENLLKAYKEMDREK 320 (347)
T ss_pred CcHHHH-HHHHhCCCEEEEEeCCHHHHHHHHHHHcCCeeehHH-HhcCCCcccccCchhhcccCCHHHHHHHHHHHHHHH
Confidence 999888 999999999983 34567999999998 445442 23 346789999999998832567
Q ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHH
Q 013835 377 VKERAVELAEAMEKEDGVTGAVKAFFK 403 (435)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~i~~ 403 (435)
.++...++.+.+.. ++.+++++.+.+
T Consensus 321 ~~~~~~~l~~~l~~-~a~~~~A~~i~~ 346 (347)
T PRK14089 321 FFKKSKELREYLKH-GSAKNVAKILKE 346 (347)
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHhc
Confidence 77777777777743 778888887754
No 94
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.89 E-value=2.6e-07 Score=90.60 Aligned_cols=154 Identities=12% Similarity=0.132 Sum_probs=92.8
Q ss_pred CCcEEEeeCCCCCCChHHHHHHHHHHHHH---hCCeEEEEcCCCCC--CCC----CCCCCceEE-cCCCChh---hhccc
Q 013835 240 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQ---TGQRGIINKGWGGL--GNL----AEPKDSIYL-LDNIPHD---WLFLQ 306 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~---~~~~~iv~~~~~~~--~~~----~~~~~~v~~-~~~~p~~---~~l~~ 306 (435)
+..+++..|++..... ++.+++++.. .+.++++++++... +.+ .+.+.++.+ .++ +.. .+++.
T Consensus 281 ~~~~i~~vGRl~~~KG---~~~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~-~~~~~~~~~~~ 356 (466)
T PRK00654 281 DAPLFAMVSRLTEQKG---LDLVLEALPELLEQGGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGY-DEALAHRIYAG 356 (466)
T ss_pred CCcEEEEeeccccccC---hHHHHHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeC-CHHHHHHHHhh
Confidence 3467788888864332 2334444443 36778777543211 111 124566654 455 433 34899
Q ss_pred ccEEEEeC---Cc-hHHHHHHHhCCCEEeecCCCChhhHHHHHHH------cCCCCCCCCCCCCCHHHHHHHHHHhc---
Q 013835 307 CKAVVHHG---GA-GTTAAGLRAACPTTIVPFFGDQPFWGERVHA------RGVGPPPIPVDEFSLPKLINAINFML--- 373 (435)
Q Consensus 307 ~~l~I~hg---G~-~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~------~g~G~~~l~~~~~~~~~l~~~i~~ll--- 373 (435)
+|++|.-+ |. .+.+||+++|+|.|+....+ ....+.. .+.|+ .++.. +++++.++|.+++
T Consensus 357 aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG----~~e~v~~~~~~~~~~~G~-lv~~~--d~~~la~~i~~~l~~~ 429 (466)
T PRK00654 357 ADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGG----LADTVIDYNPEDGEATGF-VFDDF--NAEDLLRALRRALELY 429 (466)
T ss_pred CCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCC----ccceeecCCCCCCCCceE-EeCCC--CHHHHHHHHHHHHHHh
Confidence 99999764 22 48999999999999865432 1223332 37786 66544 6899999998876
Q ss_pred -CHHHHHHHHHHHHHhh-ccCcHHHHHHHHHHhccc
Q 013835 374 -DPKVKERAVELAEAME-KEDGVTGAVKAFFKHYSR 407 (435)
Q Consensus 374 -~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~ 407 (435)
+++.+.++. ++.. ..-++++.++.+++++..
T Consensus 430 ~~~~~~~~~~---~~~~~~~fsw~~~a~~~~~lY~~ 462 (466)
T PRK00654 430 RQPPLWRALQ---RQAMAQDFSWDKSAEEYLELYRR 462 (466)
T ss_pred cCHHHHHHHH---HHHhccCCChHHHHHHHHHHHHH
Confidence 344444333 3222 345788888887776643
No 95
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.88 E-value=1.6e-07 Score=90.81 Aligned_cols=159 Identities=9% Similarity=0.031 Sum_probs=97.7
Q ss_pred cEEEeeCCCC-CCChHHHHHHHHHHHHHh-CCeEEEEcCCCCCCCCC------CCCCceEEcCCCCh-hhhcccccEEEE
Q 013835 242 PIYIGFGSLP-VQEPEKMTQIIVEAFEQT-GQRGIINKGWGGLGNLA------EPKDSIYLLDNIPH-DWLFLQCKAVVH 312 (435)
Q Consensus 242 ~v~v~~Gs~~-~~~~~~~~~~~~~~~~~~-~~~~iv~~~~~~~~~~~------~~~~~v~~~~~~p~-~~~l~~~~l~I~ 312 (435)
.++.+.|.+. ......+++.+.+.++.. +.++++++.+...+.+. .+.++|.+.++... ..+++.+|+||.
T Consensus 399 ~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVfVl 478 (578)
T PRK15490 399 TTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVFIL 478 (578)
T ss_pred cEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEEEE
Confidence 5566777753 234455556555554443 45677665443322222 24589999998643 233999999997
Q ss_pred eC---C-chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHH---HHhc-CHHHHHHHHHH
Q 013835 313 HG---G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAI---NFML-DPKVKERAVEL 384 (435)
Q Consensus 313 hg---G-~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i---~~ll-~~~~~~~~~~~ 384 (435)
.+ | .+++.||+++|+|+|+... ..+...+++...|+ .++.. +.+++.+++ ..+. +...+..+.+.
T Consensus 479 PS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG~nG~-LVp~~--D~~aLa~ai~lA~aL~~ll~~~~~mg~~ 551 (578)
T PRK15490 479 FSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEGVSGF-ILDDA--QTVNLDQACRYAEKLVNLWRSRTGICQQ 551 (578)
T ss_pred cccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccCCcEE-EECCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 3 4799999999999996554 45678888888896 66654 345555554 3333 23333333333
Q ss_pred HHH-hhccCcHHHHHHHHHHhccc
Q 013835 385 AEA-MEKEDGVTGAVKAFFKHYSR 407 (435)
Q Consensus 385 ~~~-~~~~~~~~~~~~~i~~~l~~ 407 (435)
+++ ..+.-+.+..++..++.+..
T Consensus 552 ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 552 TQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHh
Confidence 333 33445788888888877654
No 96
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.87 E-value=3.6e-07 Score=90.23 Aligned_cols=161 Identities=15% Similarity=0.095 Sum_probs=94.0
Q ss_pred CCcEEEeeCCCCCCChHHHHHHHHHHHH---HhCCeEEEEcCCCCC--CCC----CCCCCceEEcCCCChhh---hcccc
Q 013835 240 SKPIYIGFGSLPVQEPEKMTQIIVEAFE---QTGQRGIINKGWGGL--GNL----AEPKDSIYLLDNIPHDW---LFLQC 307 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~---~~~~~~iv~~~~~~~--~~~----~~~~~~v~~~~~~p~~~---~l~~~ 307 (435)
+..+++..|++.....- +.+++++. +.+.++++.+.+... +.+ .+.++++.+....+... +++.+
T Consensus 295 ~~~~i~~vGrl~~~Kg~---~~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a 371 (476)
T cd03791 295 DAPLFGFVGRLTEQKGI---DLLLEALPELLELGGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGA 371 (476)
T ss_pred CCCEEEEEeeccccccH---HHHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhC
Confidence 45778888888654332 33444443 335677766543211 111 12367887665445443 37999
Q ss_pred cEEEEeCC----chHHHHHHHhCCCEEeecCCC--ChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHH
Q 013835 308 KAVVHHGG----AGTTAAGLRAACPTTIVPFFG--DQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKER 380 (435)
Q Consensus 308 ~l~I~hgG----~~s~~Eal~~G~P~l~~P~~~--dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~ 380 (435)
|+++...- ..+.+||+++|+|.|+....+ |...+..-..+.|.|+ .++.. +++++.+++.+++ ...-++.
T Consensus 372 Dv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~-~~~~~--~~~~l~~~i~~~l~~~~~~~~ 448 (476)
T cd03791 372 DFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGF-VFEGY--NADALLAALRRALALYRDPEA 448 (476)
T ss_pred CEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeE-EeCCC--CHHHHHHHHHHHHHHHcCHHH
Confidence 99996532 247899999999999765443 2211111111345786 66544 6899999999876 3222333
Q ss_pred HHHHHHHhhcc-CcHHHHHHHHHHhcc
Q 013835 381 AVELAEAMEKE-DGVTGAVKAFFKHYS 406 (435)
Q Consensus 381 ~~~~~~~~~~~-~~~~~~~~~i~~~l~ 406 (435)
..+++++.... -++++.++.+++++.
T Consensus 449 ~~~~~~~~~~~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 449 WRKLQRNAMAQDFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHh
Confidence 33334443333 478888888777653
No 97
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.86 E-value=1e-06 Score=84.55 Aligned_cols=151 Identities=13% Similarity=-0.005 Sum_probs=97.2
Q ss_pred cEEEeeCCCCCCChHHHHHHHHHHHHHh-----CCeEEEEcCCCCCCCCCC----CC-CceEEcCCCChhhhcccccEEE
Q 013835 242 PIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGLGNLAE----PK-DSIYLLDNIPHDWLFLQCKAVV 311 (435)
Q Consensus 242 ~v~v~~Gs~~~~~~~~~~~~~~~~~~~~-----~~~~iv~~~~~~~~~~~~----~~-~~v~~~~~~p~~~~l~~~~l~I 311 (435)
.+++..|.+.... -++.++++++.. +.++++++.+.+.+.+++ ++ ....+.++.+..++++.+|+||
T Consensus 229 ~~~l~vGRL~~eK---~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~~~~~~~~~~DvFv 305 (462)
T PLN02846 229 KGAYYIGKMVWSK---GYKELLKLLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGRDHADPLFHDYKVFL 305 (462)
T ss_pred eEEEEEecCcccC---CHHHHHHHHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCCCCHHHHHHhCCEEE
Confidence 3567788875432 334455555432 445666655444333322 22 1224667777777899999999
Q ss_pred EeCCc----hHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 013835 312 HHGGA----GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAE 386 (435)
Q Consensus 312 ~hgG~----~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~ 386 (435)
.-+-. +++.||+++|+|+|+..... | ..+...+.|. .. + +.+++.+++.+++ ++.. ... .
T Consensus 306 ~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~~ng~-~~--~--~~~~~a~ai~~~l~~~~~--~~~---~ 370 (462)
T PLN02846 306 NPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQFPNCR-TY--D--DGKGFVRATLKALAEEPA--PLT---D 370 (462)
T ss_pred ECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecCCceE-ec--C--CHHHHHHHHHHHHccCch--hHH---H
Confidence 88743 88999999999999765432 3 5555566664 33 2 6899999999998 5321 111 1
Q ss_pred HhhccCcHHHHHHHHHHhccccCC
Q 013835 387 AMEKEDGVTGAVKAFFKHYSRSKT 410 (435)
Q Consensus 387 ~~~~~~~~~~~~~~i~~~l~~~~~ 410 (435)
..+..-+++.+++.++++++-.+.
T Consensus 371 ~a~~~~SWe~~~~~l~~~~~~~~~ 394 (462)
T PLN02846 371 AQRHELSWEAATERFLRVADLDLP 394 (462)
T ss_pred HHHHhCCHHHHHHHHHHHhccCCc
Confidence 122367899999999998877654
No 98
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.85 E-value=6.9e-07 Score=85.12 Aligned_cols=151 Identities=11% Similarity=0.053 Sum_probs=91.2
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHHHHHHh-CCeEEEEcCCCCCCCCCC--CCCceEEcCCCChhhh---cccccEEEE
Q 013835 239 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-GQRGIINKGWGGLGNLAE--PKDSIYLLDNIPHDWL---FLQCKAVVH 312 (435)
Q Consensus 239 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~-~~~~iv~~~~~~~~~~~~--~~~~v~~~~~~p~~~~---l~~~~l~I~ 312 (435)
.++.+++..|++......+++. +..+.. +.++++++.......... ..+||.+.+++|.+++ +..+|++|.
T Consensus 203 ~~~~~i~y~G~l~~~~d~~ll~---~la~~~p~~~~vliG~~~~~~~~~~~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~ 279 (373)
T cd04950 203 LPRPVIGYYGAIAEWLDLELLE---ALAKARPDWSFVLIGPVDVSIDPSALLRLPNVHYLGPKPYKELPAYLAGFDVAIL 279 (373)
T ss_pred CCCCEEEEEeccccccCHHHHH---HHHHHCCCCEEEEECCCcCccChhHhccCCCEEEeCCCCHHHHHHHHHhCCEEec
Confidence 3456777788886422222333 222222 567777664311111111 2379999999999888 899999885
Q ss_pred e--------CC-chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CH-HHHHHH
Q 013835 313 H--------GG-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DP-KVKERA 381 (435)
Q Consensus 313 h--------gG-~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~-~~~~~~ 381 (435)
. ++ -+.+.|++++|+|+|..+. ...++..+.+ .+..+ +.+++.++|.+++ ++ ..+.+.
T Consensus 280 P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~~~~--~~~~~--d~~~~~~ai~~~l~~~~~~~~~~ 348 (373)
T cd04950 280 PFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYEDEV--VLIAD--DPEEFVAAIEKALLEDGPARERR 348 (373)
T ss_pred CCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhcCcE--EEeCC--CHHHHHHHHHHHHhcCCchHHHH
Confidence 3 22 2569999999999997652 2233333333 23222 7899999999976 32 222221
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhcc
Q 013835 382 VELAEAMEKEDGVTGAVKAFFKHYS 406 (435)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~i~~~l~ 406 (435)
..+ ..+..+++..++.++..+.
T Consensus 349 --~~~-~~~~~sW~~~a~~~~~~l~ 370 (373)
T cd04950 349 --RLR-LAAQNSWDARAAEMLEALQ 370 (373)
T ss_pred --HHH-HHHHCCHHHHHHHHHHHHH
Confidence 111 4556788888887775553
No 99
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.85 E-value=1e-08 Score=95.63 Aligned_cols=153 Identities=13% Similarity=0.132 Sum_probs=89.4
Q ss_pred CCCcEEEeeCCCCCCC-h--HHHHHHHHHHHHHh-CCeEEEEcCCCCC------CCCCCCCCceEEcCCCChhhh---cc
Q 013835 239 GSKPIYIGFGSLPVQE-P--EKMTQIIVEAFEQT-GQRGIINKGWGGL------GNLAEPKDSIYLLDNIPHDWL---FL 305 (435)
Q Consensus 239 ~~~~v~v~~Gs~~~~~-~--~~~~~~~~~~~~~~-~~~~iv~~~~~~~------~~~~~~~~~v~~~~~~p~~~~---l~ 305 (435)
.++.+++++=...... + ...+..+++++.+. +..+|+...+.+. +.+... +|+++.+.+++.+. ++
T Consensus 179 ~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~-~~v~~~~~l~~~~~l~ll~ 257 (346)
T PF02350_consen 179 PKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLKKY-DNVRLIEPLGYEEYLSLLK 257 (346)
T ss_dssp TSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT--TTEEEE----HHHHHHHHH
T ss_pred CCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhccc-CCEEEECCCCHHHHHHHHh
Confidence 4568888875554433 2 22334456666666 6778877753321 112345 59999999988776 89
Q ss_pred cccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHH
Q 013835 306 QCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVEL 384 (435)
Q Consensus 306 ~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~ 384 (435)
+|+++|+.+| |-.-||.++|+|.|.+=..++.. .....|..+ .+ . .+.+++.+++.+++ ++....++...
T Consensus 258 ~a~~vvgdSs-GI~eEa~~lg~P~v~iR~~geRq----e~r~~~~nv-lv--~-~~~~~I~~ai~~~l~~~~~~~~~~~~ 328 (346)
T PF02350_consen 258 NADLVVGDSS-GIQEEAPSLGKPVVNIRDSGERQ----EGRERGSNV-LV--G-TDPEAIIQAIEKALSDKDFYRKLKNR 328 (346)
T ss_dssp HESEEEESSH-HHHHHGGGGT--EEECSSS-S-H----HHHHTTSEE-EE--T-SSHHHHHHHHHHHHH-HHHHHHHHCS
T ss_pred cceEEEEcCc-cHHHHHHHhCCeEEEecCCCCCH----HHHhhcceE-Ee--C-CCHHHHHHHHHHHHhChHHHHhhccC
Confidence 9999999999 55559999999999985455442 223345553 22 2 47899999999999 75666666544
Q ss_pred HHHhhccCcHHHHHHHH
Q 013835 385 AEAMEKEDGVTGAVKAF 401 (435)
Q Consensus 385 ~~~~~~~~~~~~~~~~i 401 (435)
..-+.+.+.++++++.+
T Consensus 329 ~npYgdG~as~rI~~~L 345 (346)
T PF02350_consen 329 PNPYGDGNASERIVEIL 345 (346)
T ss_dssp --TT-SS-HHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHhh
Confidence 44455555667777765
No 100
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.84 E-value=3.3e-08 Score=95.05 Aligned_cols=157 Identities=13% Similarity=0.021 Sum_probs=107.6
Q ss_pred CCcEEEeeCCCCCCChHHHHHHHHHHHHHh-----CCeEEEEcCCCCCCCCC------CCCCceEEcCCCChhhh---cc
Q 013835 240 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGLGNLA------EPKDSIYLLDNIPHDWL---FL 305 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~-----~~~~iv~~~~~~~~~~~------~~~~~v~~~~~~p~~~~---l~ 305 (435)
++..+++.|.+..... ++.++++++.+ +.++++++.+...+.+. .+.++|.+.+|+|++++ +.
T Consensus 221 ~~~~il~vGrl~~~Kg---~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~ 297 (406)
T PRK15427 221 TPLEIISVARLTEKKG---LHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLD 297 (406)
T ss_pred CCeEEEEEeCcchhcC---HHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHH
Confidence 3456777888754322 23344444332 35666665443222221 24578999999999887 89
Q ss_pred cccEEEEeC---------Cc-hHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc--
Q 013835 306 QCKAVVHHG---------GA-GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-- 373 (435)
Q Consensus 306 ~~~l~I~hg---------G~-~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-- 373 (435)
.+|++|..+ |. ++++||+++|+|+|+.... ...+.++....|+ .++.. +.++++++|.+++
T Consensus 298 ~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~~~G~-lv~~~--d~~~la~ai~~l~~~ 370 (406)
T PRK15427 298 DADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEADKSGW-LVPEN--DAQALAQRLAAFSQL 370 (406)
T ss_pred hCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCCCceE-EeCCC--CHHHHHHHHHHHHhC
Confidence 999999643 33 6799999999999976543 3556777777886 66554 6899999999988
Q ss_pred CHHHHHHHHHHHHHhh-ccCcHHHHHHHHHHhcc
Q 013835 374 DPKVKERAVELAEAME-KEDGVTGAVKAFFKHYS 406 (435)
Q Consensus 374 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~ 406 (435)
|++.++++.+.+++.. +.-.++..++.+.++++
T Consensus 371 d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 371 DTDELAPVVKRAREKVETDFNQQVINRELASLLQ 404 (406)
T ss_pred CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 7777777776666654 44577888887777664
No 101
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=98.82 E-value=9e-08 Score=91.36 Aligned_cols=162 Identities=13% Similarity=0.098 Sum_probs=104.8
Q ss_pred CCcEEEeeCCCCCCC-hHHHHHHHHHHHHHh-CCeEEEEcCCCCCC---------CC----CCCCCceEEcCCCChhhh-
Q 013835 240 SKPIYIGFGSLPVQE-PEKMTQIIVEAFEQT-GQRGIINKGWGGLG---------NL----AEPKDSIYLLDNIPHDWL- 303 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~-~~~~~~~~~~~~~~~-~~~~iv~~~~~~~~---------~~----~~~~~~v~~~~~~p~~~~- 303 (435)
++.+++..|++.... ...+++.+....++. +.++++++++.... .+ .++..++.+.+++|.+++
T Consensus 192 ~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~ 271 (380)
T PRK15484 192 DETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMH 271 (380)
T ss_pred CCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHH
Confidence 346677778875432 233333332222222 45666665432211 01 134578999999998776
Q ss_pred --cccccEEEEeCCc-----hHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CH
Q 013835 304 --FLQCKAVVHHGGA-----GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DP 375 (435)
Q Consensus 304 --l~~~~l~I~hgG~-----~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~ 375 (435)
++.+|++|..+.+ .++.||+++|+|+|+.... .+.+.+++...|. .+. +..+.++++++|.+++ |+
T Consensus 272 ~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~~~G~-~l~-~~~d~~~la~~I~~ll~d~ 345 (380)
T PRK15484 272 NYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEGITGY-HLA-EPMTSDSIISDINRTLADP 345 (380)
T ss_pred HHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccCCceE-EEe-CCCCHHHHHHHHHHHHcCH
Confidence 8999999975432 6889999999999976543 4566777777784 342 2237899999999999 88
Q ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHhccc
Q 013835 376 KVKERAVELAEAMEKEDGVTGAVKAFFKHYSR 407 (435)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 407 (435)
+.++..++..+...+.-+++..++.+++++++
T Consensus 346 ~~~~~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 346 ELTQIAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 76543333333444556888888888887753
No 102
>PLN02501 digalactosyldiacylglycerol synthase
Probab=98.78 E-value=4.9e-07 Score=88.80 Aligned_cols=144 Identities=8% Similarity=-0.030 Sum_probs=89.9
Q ss_pred eeCCCCCCChHHHHHHHHHHHHHh-----CCeEEEEcCCCCCCCCC----CCCCceEEcCCCChh-hhcccccEEEEeCC
Q 013835 246 GFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGLGNLA----EPKDSIYLLDNIPHD-WLFLQCKAVVHHGG 315 (435)
Q Consensus 246 ~~Gs~~~~~~~~~~~~~~~~~~~~-----~~~~iv~~~~~~~~~~~----~~~~~v~~~~~~p~~-~~l~~~~l~I~hgG 315 (435)
..|.+... +-+..++++++.. +.++++++.+...+.+. ++.-++.+.++.+.. .+++.+|+||.-+-
T Consensus 551 fVGRLa~E---KGld~LLeAla~L~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~dd~~~lyasaDVFVlPS~ 627 (794)
T PLN02501 551 FLGKMVWA---KGYRELIDLLAKHKNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKVFINPSI 627 (794)
T ss_pred EEEccccc---CCHHHHHHHHHHHHhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCEEEECCC
Confidence 35676432 2334455555432 45666665444333332 133357788887755 47999999998664
Q ss_pred ----chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHhhc
Q 013835 316 ----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAEAMEK 390 (435)
Q Consensus 316 ----~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~~~~~ 390 (435)
.++++||+++|+|+|+....+.. . +...+.|. + . -+.+++.++|.+++ |+..+..+.. ..
T Consensus 628 sEgFGlVlLEAMA~GlPVVATd~pG~e----~-V~~g~nGl--l-~--~D~EafAeAI~~LLsd~~~rl~~~a-----~~ 692 (794)
T PLN02501 628 SDVLCTATAEALAMGKFVVCADHPSNE----F-FRSFPNCL--T-Y--KTSEDFVAKVKEALANEPQPLTPEQ-----RY 692 (794)
T ss_pred cccchHHHHHHHHcCCCEEEecCCCCc----e-EeecCCeE--e-c--CCHHHHHHHHHHHHhCchhhhHHHH-----Hh
Confidence 37899999999999988665432 1 33333442 2 2 26899999999999 7664433321 22
Q ss_pred cCcHHHHHHHHHHhccc
Q 013835 391 EDGVTGAVKAFFKHYSR 407 (435)
Q Consensus 391 ~~~~~~~~~~i~~~l~~ 407 (435)
.-+++.+++.+++.-+-
T Consensus 693 ~~SWeAaadrLle~~~~ 709 (794)
T PLN02501 693 NLSWEAATQRFMEYSDL 709 (794)
T ss_pred hCCHHHHHHHHHHhhcc
Confidence 45788888887766544
No 103
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.77 E-value=2.9e-08 Score=76.86 Aligned_cols=113 Identities=17% Similarity=0.210 Sum_probs=77.8
Q ss_pred CcEEEeeCCCCCCChHHHH-----HHHHHHHHHhCC-eEEEEcCCCC---CCCCCC--CCCceEEc--CCCCh-hhhccc
Q 013835 241 KPIYIGFGSLPVQEPEKMT-----QIIVEAFEQTGQ-RGIINKGWGG---LGNLAE--PKDSIYLL--DNIPH-DWLFLQ 306 (435)
Q Consensus 241 ~~v~v~~Gs~~~~~~~~~~-----~~~~~~~~~~~~-~~iv~~~~~~---~~~~~~--~~~~v~~~--~~~p~-~~~l~~ 306 (435)
..+|||.||... +.++ +...+.+.+.++ +.++.-|.+. .+.... ..+.+.+- .|-|. .+.++.
T Consensus 4 ~~vFVTVGtT~F---d~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~ 80 (170)
T KOG3349|consen 4 MTVFVTVGTTSF---DDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRS 80 (170)
T ss_pred eEEEEEeccccH---HHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhh
Confidence 479999999752 2232 234566677776 4555555431 111111 23444444 45666 566899
Q ss_pred ccEEEEeCCchHHHHHHHhCCCEEeecCC----CChhhHHHHHHHcCCCCCCCCC
Q 013835 307 CKAVVHHGGAGTTAAGLRAACPTTIVPFF----GDQPFWGERVHARGVGPPPIPV 357 (435)
Q Consensus 307 ~~l~I~hgG~~s~~Eal~~G~P~l~~P~~----~dQ~~na~~v~~~g~G~~~l~~ 357 (435)
||+||+|+|+||++|.|..|+|.|+++.- .+|.+-|..+++.|.=. ...+
T Consensus 81 AdlVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~-~C~p 134 (170)
T KOG3349|consen 81 ADLVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLY-YCTP 134 (170)
T ss_pred ccEEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEE-Eeec
Confidence 99999999999999999999999999843 68999999999998654 4433
No 104
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.72 E-value=5.7e-06 Score=79.99 Aligned_cols=137 Identities=12% Similarity=0.058 Sum_probs=85.2
Q ss_pred CCcEEEeeCCCCCCChHHHHHHHHHHHHHh----------CCeEEEEcCCCCCC------CCC------CCCCceEEcCC
Q 013835 240 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT----------GQRGIINKGWGGLG------NLA------EPKDSIYLLDN 297 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~----------~~~~iv~~~~~~~~------~~~------~~~~~v~~~~~ 297 (435)
++.++++.|++.... -.+.+++++... +.++++++++...+ .+. .+.++|.+.++
T Consensus 236 ~~~~il~vgr~~~~K---~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~ 312 (419)
T cd03806 236 RENQILSIAQFRPEK---NHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVN 312 (419)
T ss_pred CCcEEEEEEeecCCC---CHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecC
Confidence 346777888775322 223344444332 25677666543211 111 24679999999
Q ss_pred CChhhh---cccccEEEEeC---C-chHHHHHHHhCCCEEeecCCCChhhHHHHHH---HcCCCCCCCCCCCCCHHHHHH
Q 013835 298 IPHDWL---FLQCKAVVHHG---G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVH---ARGVGPPPIPVDEFSLPKLIN 367 (435)
Q Consensus 298 ~p~~~~---l~~~~l~I~hg---G-~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~---~~g~G~~~l~~~~~~~~~l~~ 367 (435)
+|.+++ +.+||++|+.. | ..++.||+++|+|+|+....+. ....++ ....|+ .. + +++++++
T Consensus 313 v~~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g~~G~-l~--~--d~~~la~ 384 (419)
T cd03806 313 APFEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGGPTGF-LA--S--TAEEYAE 384 (419)
T ss_pred CCHHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCCCCceE-Ee--C--CHHHHHH
Confidence 999887 89999988643 1 2489999999999997654331 112333 456785 43 2 7899999
Q ss_pred HHHHhc-CH-HHHHHHHHHHHH
Q 013835 368 AINFML-DP-KVKERAVELAEA 387 (435)
Q Consensus 368 ~i~~ll-~~-~~~~~~~~~~~~ 387 (435)
+|.+++ ++ ..++..++.+++
T Consensus 385 ai~~ll~~~~~~~~~~~~~~~~ 406 (419)
T cd03806 385 AIEKILSLSEEERLRIRRAARS 406 (419)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 999999 54 444444333333
No 105
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.71 E-value=1.1e-05 Score=74.54 Aligned_cols=108 Identities=16% Similarity=0.196 Sum_probs=81.9
Q ss_pred CceEEcCCC-ChhhhcccccEEE------EeCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCH
Q 013835 290 DSIYLLDNI-PHDWLFLQCKAVV------HHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSL 362 (435)
Q Consensus 290 ~~v~~~~~~-p~~~~l~~~~l~I------~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~ 362 (435)
.+|.+.+-+ ....++.-+|+.+ .+||+| .+|++++|+|+|.=|..+.|.+-++.++..|.|+ .++ +.
T Consensus 300 tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~-~v~----~~ 373 (419)
T COG1519 300 TDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGL-QVE----DA 373 (419)
T ss_pred CcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeE-EEC----CH
Confidence 466666654 3333377788654 477884 7899999999999999999999999999999997 665 46
Q ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhhccC--cHHHHHHHHHH
Q 013835 363 PKLINAINFML-DPKVKERAVELAEAMEKED--GVTGAVKAFFK 403 (435)
Q Consensus 363 ~~l~~~i~~ll-~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~ 403 (435)
+.|.+++..++ |++.++++.+....+..++ ..++..+.++.
T Consensus 374 ~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~gal~r~l~~l~~ 417 (419)
T COG1519 374 DLLAKAVELLLADEDKREAYGRAGLEFLAQNRGALARTLEALKP 417 (419)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 88888888888 8999998877777766543 33466665554
No 106
>PLN02316 synthase/transferase
Probab=98.68 E-value=2.5e-06 Score=88.61 Aligned_cols=161 Identities=11% Similarity=0.032 Sum_probs=100.3
Q ss_pred CcEEEeeCCCCCCChHHHHHHHHHHHHH---hCCeEEEEcCCCCC---CCC---C-----CCCCceEEcCCCChh---hh
Q 013835 241 KPIYIGFGSLPVQEPEKMTQIIVEAFEQ---TGQRGIINKGWGGL---GNL---A-----EPKDSIYLLDNIPHD---WL 303 (435)
Q Consensus 241 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~~---~~~~~iv~~~~~~~---~~~---~-----~~~~~v~~~~~~p~~---~~ 303 (435)
..++...|.+.....- +.+++++.. .+.++++++++.+. ..+ . ..+++|.+....+.. .+
T Consensus 840 ~plVg~VGRL~~qKGv---dlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~i 916 (1036)
T PLN02316 840 LPLVGIITRLTHQKGI---HLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLI 916 (1036)
T ss_pred CeEEEEEeccccccCH---HHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHH
Confidence 4677788888654443 334444433 36778776544221 111 1 135678877655554 46
Q ss_pred cccccEEEEeCC----chHHHHHHHhCCCEEeecCCC--ChhhH-------HHHHHHcCCCCCCCCCCCCCHHHHHHHHH
Q 013835 304 FLQCKAVVHHGG----AGTTAAGLRAACPTTIVPFFG--DQPFW-------GERVHARGVGPPPIPVDEFSLPKLINAIN 370 (435)
Q Consensus 304 l~~~~l~I~hgG----~~s~~Eal~~G~P~l~~P~~~--dQ~~n-------a~~v~~~g~G~~~l~~~~~~~~~l~~~i~ 370 (435)
++.+|+|+..+= ..+.+||+++|+|.|+....+ |.... +......+.|+ .++.. ++++|..+|.
T Consensus 917 yaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGf-lf~~~--d~~aLa~AL~ 993 (1036)
T PLN02316 917 YAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGF-SFDGA--DAAGVDYALN 993 (1036)
T ss_pred HHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceE-EeCCC--CHHHHHHHHH
Confidence 999999996652 249999999999999865543 21111 11011125675 55543 7899999999
Q ss_pred Hhc-C-HHHHHHHHHHHHHhhcc-CcHHHHHHHHHHhccc
Q 013835 371 FML-D-PKVKERAVELAEAMEKE-DGVTGAVKAFFKHYSR 407 (435)
Q Consensus 371 ~ll-~-~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~ 407 (435)
+++ + ...+....+++++.+.. -++++.++..++++..
T Consensus 994 raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~ 1033 (1036)
T PLN02316 994 RAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHS 1033 (1036)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 988 5 45555556666666554 4888888888877654
No 107
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.66 E-value=1.1e-06 Score=81.82 Aligned_cols=179 Identities=15% Similarity=0.109 Sum_probs=102.7
Q ss_pred CCCCeeee-cccccCCCCCCCchHHHHH-HHcCCCcEEEeeCCCCCCChHHHHHHHHHHHHHh-----CCeEEEEcCCCC
Q 013835 209 GPKVDVVG-FCFLDLASNYEPPESLVKW-LEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGG 281 (435)
Q Consensus 209 ~~~~~~vG-~~~~~~~~~~~~~~~l~~~-~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~-----~~~~iv~~~~~~ 281 (435)
.-++.||| |+. +............+. ++.++++|-+--||-.. ....++..++++.+.. +.++++......
T Consensus 152 g~~~~~VGHPl~-d~~~~~~~~~~~~~~~l~~~~~iIaLLPGSR~~-EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~ 229 (373)
T PF02684_consen 152 GVPVTYVGHPLL-DEVKPEPDRAEAREKLLDPDKPIIALLPGSRKS-EIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEV 229 (373)
T ss_pred CCCeEEECCcch-hhhccCCCHHHHHHhcCCCCCcEEEEeCCCCHH-HHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHH
Confidence 45689999 553 332222223333333 45566789999998632 2233445455554432 456776654332
Q ss_pred CCC-C----CCCCCceEEcC-CCChhhhcccccEEEEeCCchHHHHHHHhCCCEEeec-CCCChhhHHHHHHHcC-CCC-
Q 013835 282 LGN-L----AEPKDSIYLLD-NIPHDWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVP-FFGDQPFWGERVHARG-VGP- 352 (435)
Q Consensus 282 ~~~-~----~~~~~~v~~~~-~~p~~~~l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P-~~~dQ~~na~~v~~~g-~G~- 352 (435)
... + ...+.++.+.- .-...+++..||+.+.-+|. .++|+..+|+|||++= ...=-..-++++.+.. +|+
T Consensus 230 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~ 308 (373)
T PF02684_consen 230 HEELIEEILAEYPPDVSIVIIEGESYDAMAAADAALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLP 308 (373)
T ss_pred HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcchhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeech
Confidence 111 1 11222222222 22344569999999999999 8899999999999862 2222333444443321 111
Q ss_pred ---------CCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHhhc
Q 013835 353 ---------PPIPVDEFSLPKLINAINFML-DPKVKERAVELAEAMEK 390 (435)
Q Consensus 353 ---------~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~~~~~ 390 (435)
..+-+++.+++.+.+++.+++ |++.++......+.+.+
T Consensus 309 Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~ 356 (373)
T PF02684_consen 309 NIIAGREVVPELIQEDATPENIAAELLELLENPEKRKKQKELFREIRQ 356 (373)
T ss_pred hhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 022246779999999999999 87766665555555444
No 108
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.63 E-value=2e-06 Score=82.48 Aligned_cols=134 Identities=10% Similarity=0.036 Sum_probs=80.7
Q ss_pred HHHHHHHHHhC--CeEEEEcCCCCCCCCCCCCCceEEcCCC-Chhhh---cccccEEEEeCCc----hHHHHHHHhCCCE
Q 013835 260 QIIVEAFEQTG--QRGIINKGWGGLGNLAEPKDSIYLLDNI-PHDWL---FLQCKAVVHHGGA----GTTAAGLRAACPT 329 (435)
Q Consensus 260 ~~~~~~~~~~~--~~~iv~~~~~~~~~~~~~~~~v~~~~~~-p~~~~---l~~~~l~I~hgG~----~s~~Eal~~G~P~ 329 (435)
..+++++...+ .++++.+.+.. ..+.++...++. +..++ ++++|+||..+-+ ++++||+++|+|+
T Consensus 259 ~~li~A~~~l~~~~~L~ivG~g~~-----~~~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PV 333 (405)
T PRK10125 259 QQLVREMMALGDKIELHTFGKFSP-----FTAGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPV 333 (405)
T ss_pred HHHHHHHHhCCCCeEEEEEcCCCc-----ccccceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCE
Confidence 44777777654 34444432221 123567777776 33343 8999999987643 7899999999999
Q ss_pred EeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHhhccCcHHHHHHHHHHhcc
Q 013835 330 TIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAEAMEKEDGVTGAVKAFFKHYS 406 (435)
Q Consensus 330 l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 406 (435)
|+....+ ..+.+.. +.|+ .+++. +.++|++.+...+ +..+.+...+..++..+.-+.+..++..++++.
T Consensus 334 Vat~~gG----~~Eiv~~-~~G~-lv~~~--d~~~La~~~~~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~ 403 (405)
T PRK10125 334 IATHSDA----AREVLQK-SGGK-TVSEE--EVLQLAQLSKPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQ 403 (405)
T ss_pred EEeCCCC----hHHhEeC-CcEE-EECCC--CHHHHHhccCHHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9776654 3444543 5786 77655 6788887543222 221111122333344445677777777776653
No 109
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.62 E-value=1.1e-05 Score=73.93 Aligned_cols=158 Identities=13% Similarity=0.117 Sum_probs=103.3
Q ss_pred CCCcEEEeeCCCCCC--ChHHHHHHHHHHHHHh-CCeEEEEcCCCCCCCCCC-------CCCceEEcCCCCh---hhhcc
Q 013835 239 GSKPIYIGFGSLPVQ--EPEKMTQIIVEAFEQT-GQRGIINKGWGGLGNLAE-------PKDSIYLLDNIPH---DWLFL 305 (435)
Q Consensus 239 ~~~~v~v~~Gs~~~~--~~~~~~~~~~~~~~~~-~~~~iv~~~~~~~~~~~~-------~~~~v~~~~~~p~---~~~l~ 305 (435)
+++.++++.=...+. ..++..+.+.+..+.. +..++...-.. ..+.+ ..+++.+.+-+.. .-++.
T Consensus 203 ~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~~viyp~H~~--~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~ 280 (383)
T COG0381 203 DKKYILVTAHRRENVGEPLEEICEALREIAEEYPDVIVIYPVHPR--PRVRELVLKRLKNVERVKLIDPLGYLDFHNLMK 280 (383)
T ss_pred cCcEEEEEcchhhcccccHHHHHHHHHHHHHhCCCceEEEeCCCC--hhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHH
Confidence 446888886554332 2233333343444444 33444333222 11111 2246877775544 44589
Q ss_pred cccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHH
Q 013835 306 QCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVEL 384 (435)
Q Consensus 306 ~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~ 384 (435)
+|-+++|.+|. -.-||...|+|++++-...|+++ .+ +.|.-+ .+. .+.+.+.+++.+++ +++..++++..
T Consensus 281 ~a~~iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v-~agt~~-lvg---~~~~~i~~~~~~ll~~~~~~~~m~~~ 351 (383)
T COG0381 281 NAFLILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GV-EAGTNI-LVG---TDEENILDAATELLEDEEFYERMSNA 351 (383)
T ss_pred hceEEEecCCc-hhhhHHhcCCcEEeeccCCCCcc---ce-ecCceE-EeC---ccHHHHHHHHHHHhhChHHHHHHhcc
Confidence 99999999998 78999999999999999999887 22 233332 232 25799999999999 99999999877
Q ss_pred HHHhhccCcHHHHHHHHHHhccc
Q 013835 385 AEAMEKEDGVTGAVKAFFKHYSR 407 (435)
Q Consensus 385 ~~~~~~~~~~~~~~~~i~~~l~~ 407 (435)
..-+.+....+++++.+......
T Consensus 352 ~npYgdg~as~rIv~~l~~~~~~ 374 (383)
T COG0381 352 KNPYGDGNASERIVEILLNYFDS 374 (383)
T ss_pred cCCCcCcchHHHHHHHHHHHhhh
Confidence 66666666777888888766543
No 110
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.60 E-value=8.5e-07 Score=77.81 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=39.6
Q ss_pred CCCceEEcCCCCh-hhh---cccccEEEEeCC----chHHHHHHHhCCCEEeecCCCC
Q 013835 288 PKDSIYLLDNIPH-DWL---FLQCKAVVHHGG----AGTTAAGLRAACPTTIVPFFGD 337 (435)
Q Consensus 288 ~~~~v~~~~~~p~-~~~---l~~~~l~I~hgG----~~s~~Eal~~G~P~l~~P~~~d 337 (435)
...|+.+.++++. +.+ ++.+|++|+... .+++.||+++|+|+|+.+....
T Consensus 159 ~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 159 LLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred CcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 4579999998733 333 556999999886 6899999999999998876543
No 111
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=98.58 E-value=6.3e-07 Score=86.35 Aligned_cols=155 Identities=9% Similarity=0.015 Sum_probs=97.7
Q ss_pred CCcEEEeeCCCCCCC-hHHHHHHHHHHHHHh---CCeEEEEcCCCCCCCCC------CCCCceEEcCCCChhhh---c--
Q 013835 240 SKPIYIGFGSLPVQE-PEKMTQIIVEAFEQT---GQRGIINKGWGGLGNLA------EPKDSIYLLDNIPHDWL---F-- 304 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~-~~~~~~~~~~~~~~~---~~~~iv~~~~~~~~~~~------~~~~~v~~~~~~p~~~~---l-- 304 (435)
++..+++.|.+.... ...+++.+.+..+.. ...+++.+++...+.+. ...++|.+.++++..++ +
T Consensus 229 ~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~ 308 (407)
T cd04946 229 DTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKE 308 (407)
T ss_pred CCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhh
Confidence 346677888875433 333333332222221 22333344332222111 23468999999998876 4
Q ss_pred ccccEEEEeCC----chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHH
Q 013835 305 LQCKAVVHHGG----AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKE 379 (435)
Q Consensus 305 ~~~~l~I~hgG----~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~ 379 (435)
..+|++|..+- .++++||+++|+|+|+.. .......+.+.+.|+ .++. ..+.++++++|.+++ |++.++
T Consensus 309 ~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i~~~~~G~-l~~~-~~~~~~la~~I~~ll~~~~~~~ 382 (407)
T cd04946 309 NPVDVFVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIVDNGGNGL-LLSK-DPTPNELVSSLSKFIDNEEEYQ 382 (407)
T ss_pred cCCCEEEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHhcCCCcEE-EeCC-CCCHHHHHHHHHHHHhCHHHHH
Confidence 35788887664 378999999999999644 444667787777886 5543 336899999999999 899888
Q ss_pred HHHHHHHHhhcc-CcHHHHHHH
Q 013835 380 RAVELAEAMEKE-DGVTGAVKA 400 (435)
Q Consensus 380 ~~~~~~~~~~~~-~~~~~~~~~ 400 (435)
++++.+++.... -.++...+.
T Consensus 383 ~m~~~ar~~~~~~f~~~~~~~~ 404 (407)
T cd04946 383 TMREKAREKWEENFNASKNYRE 404 (407)
T ss_pred HHHHHHHHHHHHHcCHHHhHHH
Confidence 887766665543 244444443
No 112
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.57 E-value=9.6e-08 Score=90.33 Aligned_cols=136 Identities=17% Similarity=0.184 Sum_probs=95.4
Q ss_pred cEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCC-CCCCceEEcCCCChhhh---cccccEEEEeC--C
Q 013835 242 PIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLA-EPKDSIYLLDNIPHDWL---FLQCKAVVHHG--G 315 (435)
Q Consensus 242 ~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~-~~~~~v~~~~~~p~~~~---l~~~~l~I~hg--G 315 (435)
..++..|++... +-++.++++++..+.++++++++...+.+. ...+||.+.+++|.+++ +++||++|... |
T Consensus 196 ~~il~~G~~~~~---K~~~~li~a~~~~~~~l~ivG~g~~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e~ 272 (351)
T cd03804 196 DYYLSVGRLVPY---KRIDLAIEAFNKLGKRLVVIGDGPELDRLRAKAGPNVTFLGRVSDEELRDLYARARAFLFPAEED 272 (351)
T ss_pred CEEEEEEcCccc---cChHHHHHHHHHCCCcEEEEECChhHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEEEECCcCC
Confidence 456677887543 234557788888888888776544322222 35689999999999776 89999999543 2
Q ss_pred -chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CH-HHHHHHHHHHHH
Q 013835 316 -AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DP-KVKERAVELAEA 387 (435)
Q Consensus 316 -~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~-~~~~~~~~~~~~ 387 (435)
..++.||+++|+|+|+....+ ....+++.+.|+ .++.+ +.++++++|.+++ |+ ..++++++.+++
T Consensus 273 ~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~~~G~-~~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~ 340 (351)
T cd03804 273 FGIVPVEAMASGTPVIAYGKGG----ALETVIDGVTGI-LFEEQ--TVESLAAAVERFEKNEDFDPQAIRAHAER 340 (351)
T ss_pred CCchHHHHHHcCCCEEEeCCCC----CcceeeCCCCEE-EeCCC--CHHHHHHHHHHHHhCcccCHHHHHHHHHh
Confidence 246889999999999876543 345566667886 66544 6899999999999 77 455555554433
No 113
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.56 E-value=1.2e-06 Score=84.41 Aligned_cols=157 Identities=10% Similarity=0.048 Sum_probs=103.2
Q ss_pred CcEEEeeCCCCCCC-hHHHHH---HHHHHHH-H-hCCeEEEEcCCCCCCCCCC--CCCceEEcCCCChhh-hcccccEEE
Q 013835 241 KPIYIGFGSLPVQE-PEKMTQ---IIVEAFE-Q-TGQRGIINKGWGGLGNLAE--PKDSIYLLDNIPHDW-LFLQCKAVV 311 (435)
Q Consensus 241 ~~v~v~~Gs~~~~~-~~~~~~---~~~~~~~-~-~~~~~iv~~~~~~~~~~~~--~~~~v~~~~~~p~~~-~l~~~~l~I 311 (435)
+.+++..|++.... .+.++. .+...+. . .+.++++++++.. ..+.+ ..++|.+.++++... +++++|++|
T Consensus 224 ~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~-~~~~~l~~~~~V~~~G~v~~~~~~~~~adv~v 302 (397)
T TIGR03087 224 KRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPS-PAVRALAALPGVTVTGSVADVRPYLAHAAVAV 302 (397)
T ss_pred CcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCCh-HHHHHhccCCCeEEeeecCCHHHHHHhCCEEE
Confidence 35667778875433 232222 1222222 2 2467776654332 22221 346899999997532 289999998
Q ss_pred Ee----CCc-hHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHH
Q 013835 312 HH----GGA-GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELA 385 (435)
Q Consensus 312 ~h----gG~-~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~ 385 (435)
.. .|. +.+.||+++|+|+|+.+...+.. .+..|.|+ .+. .+.++++++|.+++ |++.++++.+.+
T Consensus 303 ~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~~~g~-lv~---~~~~~la~ai~~ll~~~~~~~~~~~~a 373 (397)
T TIGR03087 303 APLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALPGAEL-LVA---ADPADFAAAILALLANPAEREELGQAA 373 (397)
T ss_pred ecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccCCcce-EeC---CCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 42 343 57999999999999987543221 12346775 553 37899999999999 999888888877
Q ss_pred HHhh-ccCcHHHHHHHHHHhccc
Q 013835 386 EAME-KEDGVTGAVKAFFKHYSR 407 (435)
Q Consensus 386 ~~~~-~~~~~~~~~~~i~~~l~~ 407 (435)
++.. +.-+++..++.++++++.
T Consensus 374 r~~v~~~fsw~~~~~~~~~~l~~ 396 (397)
T TIGR03087 374 RRRVLQHYHWPRNLARLDALLEQ 396 (397)
T ss_pred HHHHHHhCCHHHHHHHHHHHhcC
Confidence 7765 456899999999988754
No 114
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.52 E-value=1.3e-05 Score=78.19 Aligned_cols=176 Identities=14% Similarity=0.108 Sum_probs=96.9
Q ss_pred CCCCCeeee-cccccCCCCCCCchHHHHHHH--cCCCcEEEeeCCCCCCChHHHHHHHHHHHH--Hh--CCeEEEEcCCC
Q 013835 208 WGPKVDVVG-FCFLDLASNYEPPESLVKWLE--AGSKPIYIGFGSLPVQEPEKMTQIIVEAFE--QT--GQRGIINKGWG 280 (435)
Q Consensus 208 ~~~~~~~vG-~~~~~~~~~~~~~~~l~~~~~--~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~--~~--~~~~iv~~~~~ 280 (435)
..-++.||| |+. +........++..+.+. +++++|-+--||-.. +-..++..++++.+ .. +.++++.....
T Consensus 379 ~gv~v~yVGHPL~-d~i~~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~-EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~ 456 (608)
T PRK01021 379 SPLRTVYLGHPLV-ETISSFSPNLSWKEQLHLPSDKPIVAAFPGSRRG-DILRNLTIQVQAFLASSLASTHQLLVSSANP 456 (608)
T ss_pred cCCCeEEECCcHH-hhcccCCCHHHHHHHcCCCCCCCEEEEECCCCHH-HHHHHHHHHHHHHHHHHhccCeEEEEecCch
Confidence 356788999 553 32222223333443332 244688899998632 23445666676665 32 45676654322
Q ss_pred CC-CCCCC----CC-CceEEcCCCChhhhcccccEEEEeCCchHHHHHHHhCCCEEee-cCCCChhhHHHHHHHc-----
Q 013835 281 GL-GNLAE----PK-DSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLRAACPTTIV-PFFGDQPFWGERVHAR----- 348 (435)
Q Consensus 281 ~~-~~~~~----~~-~~v~~~~~~p~~~~l~~~~l~I~hgG~~s~~Eal~~G~P~l~~-P~~~dQ~~na~~v~~~----- 348 (435)
.. +.+.+ .+ -++.+..--...+++++||+.+.-+|. .++|+..+|+||+++ -...=-..-++++.+.
T Consensus 457 ~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yI 535 (608)
T PRK01021 457 KYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDCALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAY 535 (608)
T ss_pred hhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCeeeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCee
Confidence 11 11111 11 122322211125679999999999999 889999999999985 2222222344555541
Q ss_pred -------CCCC-CCCC--CCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 013835 349 -------GVGP-PPIP--VDEFSLPKLINAINFML-DPKVKERAVELAEA 387 (435)
Q Consensus 349 -------g~G~-~~l~--~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~~ 387 (435)
|-.+ ..+- +++.+++++.+++ +++ |++.++++.+--++
T Consensus 536 sLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~ 584 (608)
T PRK01021 536 SLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRD 584 (608)
T ss_pred ehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHH
Confidence 1111 0121 3567899999997 777 87555544443333
No 115
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=98.52 E-value=1.7e-07 Score=78.79 Aligned_cols=142 Identities=19% Similarity=0.217 Sum_probs=94.8
Q ss_pred CCCcEEEeeCCCCC-CChHHHHHHHHHHHH--HhCCeEEEEcCCCCCCCC------CCCCCceEEcCCCChhhh---ccc
Q 013835 239 GSKPIYIGFGSLPV-QEPEKMTQIIVEAFE--QTGQRGIINKGWGGLGNL------AEPKDSIYLLDNIPHDWL---FLQ 306 (435)
Q Consensus 239 ~~~~v~v~~Gs~~~-~~~~~~~~~~~~~~~--~~~~~~iv~~~~~~~~~~------~~~~~~v~~~~~~p~~~~---l~~ 306 (435)
.++.+++..|+... .....+++.+..... ..+..+++++.......+ ....+++.+.++.+..++ +..
T Consensus 13 ~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 92 (172)
T PF00534_consen 13 DKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDELYKS 92 (172)
T ss_dssp TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH
T ss_pred CCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccccccccccccccccccccccccc
Confidence 34577788888753 233444443322222 223445544411110111 135679999999986655 899
Q ss_pred ccEEEEe----CCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHH
Q 013835 307 CKAVVHH----GGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERA 381 (435)
Q Consensus 307 ~~l~I~h----gG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~ 381 (435)
+|++|+. |..+++.||+++|+|+|+ .+-..+...+.+.+.|+ .++.. +.++++++|.+++ +++.++.+
T Consensus 93 ~di~v~~s~~e~~~~~~~Ea~~~g~pvI~----~~~~~~~e~~~~~~~g~-~~~~~--~~~~l~~~i~~~l~~~~~~~~l 165 (172)
T PF00534_consen 93 SDIFVSPSRNEGFGLSLLEAMACGCPVIA----SDIGGNNEIINDGVNGF-LFDPN--DIEELADAIEKLLNDPELRQKL 165 (172)
T ss_dssp TSEEEE-BSSBSS-HHHHHHHHTT-EEEE----ESSTHHHHHSGTTTSEE-EESTT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeccccccccccccccccccccccceee----ccccCCceeeccccceE-EeCCC--CHHHHHHHHHHHHCCHHHHHHH
Confidence 9999988 455799999999999995 44566778888888886 66554 8899999999999 88888888
Q ss_pred HHHHHH
Q 013835 382 VELAEA 387 (435)
Q Consensus 382 ~~~~~~ 387 (435)
.+.+++
T Consensus 166 ~~~~~~ 171 (172)
T PF00534_consen 166 GKNARE 171 (172)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 776654
No 116
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=1.3e-06 Score=66.56 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=74.2
Q ss_pred EEEeeCCCCCCChHH-HHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh---cccccEEEEeCCchH
Q 013835 243 IYIGFGSLPVQEPEK-MTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL---FLQCKAVVHHGGAGT 318 (435)
Q Consensus 243 v~v~~Gs~~~~~~~~-~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~---l~~~~l~I~hgG~~s 318 (435)
+|||.||.+....+- .+..+.+..+....++|+.-|..+... . ...++.+|.-...+ ...+.++|+|+|.||
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~kp---v-agl~v~~F~~~~kiQsli~darIVISHaG~GS 77 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDIKP---V-AGLRVYGFDKEEKIQSLIHDARIVISHAGEGS 77 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCccc---c-cccEEEeechHHHHHHHhhcceEEEeccCcch
Confidence 789999984321111 111122223334567787776654322 2 23577777644444 788889999999999
Q ss_pred HHHHHHhCCCEEeecCC--------CChhhHHHHHHHcCCCCCCCC
Q 013835 319 TAAGLRAACPTTIVPFF--------GDQPFWGERVHARGVGPPPIP 356 (435)
Q Consensus 319 ~~Eal~~G~P~l~~P~~--------~dQ~~na~~v~~~g~G~~~l~ 356 (435)
++.++..++|+|++|.. .+|..-|..+.+.+.=+ ...
T Consensus 78 IL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv-~~s 122 (161)
T COG5017 78 ILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVV-ACS 122 (161)
T ss_pred HHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceE-EEc
Confidence 99999999999999954 36899999998888764 444
No 117
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.47 E-value=1.7e-06 Score=84.90 Aligned_cols=162 Identities=13% Similarity=0.017 Sum_probs=107.0
Q ss_pred CcEEEeeCCCCCCC-hHHHHHHHHHHHHHh-CCeEEEEcCCCCCCCCC------CCCCceEEcCCCChhhhcccccEEEE
Q 013835 241 KPIYIGFGSLPVQE-PEKMTQIIVEAFEQT-GQRGIINKGWGGLGNLA------EPKDSIYLLDNIPHDWLFLQCKAVVH 312 (435)
Q Consensus 241 ~~v~v~~Gs~~~~~-~~~~~~~~~~~~~~~-~~~~iv~~~~~~~~~~~------~~~~~v~~~~~~p~~~~l~~~~l~I~ 312 (435)
+.++++.|++.... ...+++++....+.. +.++++++.+...+.+. .+.++|.+.++.+..++++.+|++|.
T Consensus 319 ~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~~~~~~~~~adv~v~ 398 (500)
T TIGR02918 319 PFSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHRNLSEVYKDYELYLS 398 (500)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCCCHHHHHHhCCEEEE
Confidence 45677888875432 233333332222222 45566665433322221 24578999999888888999999997
Q ss_pred eC---C-chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCC--CCC----HHHHHHHHHHhcCHHHHHHHH
Q 013835 313 HG---G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVD--EFS----LPKLINAINFMLDPKVKERAV 382 (435)
Q Consensus 313 hg---G-~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~--~~~----~~~l~~~i~~ll~~~~~~~~~ 382 (435)
-+ | ..+++||+++|+|+|+.... ..+...++....|. .++.. ..+ .++++++|.+++++..++++.
T Consensus 399 pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~g~nG~-lv~~~~~~~d~~~~~~~la~~I~~ll~~~~~~~~~ 474 (500)
T TIGR02918 399 ASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIEDNKNGY-LIPIDEEEDDEDQIITALAEKIVEYFNSNDIDAFH 474 (500)
T ss_pred cCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccCCCCEE-EEeCCccccchhHHHHHHHHHHHHHhChHHHHHHH
Confidence 55 2 37899999999999965532 13566777777886 66532 112 788999999999544566777
Q ss_pred HHHHHhhccCcHHHHHHHHHHhcc
Q 013835 383 ELAEAMEKEDGVTGAVKAFFKHYS 406 (435)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~i~~~l~ 406 (435)
+.+.+....-..+.+++.+++++.
T Consensus 475 ~~a~~~a~~fs~~~v~~~w~~ll~ 498 (500)
T TIGR02918 475 EYSYQIAEGFLTANIIEKWKKLVR 498 (500)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHh
Confidence 777766666788888888877664
No 118
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.45 E-value=7.5e-05 Score=65.87 Aligned_cols=322 Identities=14% Similarity=0.119 Sum_probs=160.6
Q ss_pred ccchhHHHHHHHHHHHCCCeEEEEeCC--CcHHHHHhcCceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHHHhhcc
Q 013835 7 RGDVQPFVAIGKRLQDYGHRVRLATHS--NFKDFVLTAGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLLPACR 84 (435)
Q Consensus 7 ~GH~~p~~~la~~L~~rGh~V~~~~~~--~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (435)
.-|+.-...+..+|.++||+|.+-+.+ ...+.+...|+++.+++. .+...+. ..+.+......
T Consensus 10 ~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk--------~g~~tl~---~Kl~~~~eR~~---- 74 (346)
T COG1817 10 PPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGK--------HGGVTLK---EKLLESAERVY---- 74 (346)
T ss_pred cchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEeecc--------cCCccHH---HHHHHHHHHHH----
Confidence 447778899999999999999999854 467888999999999971 1111121 12222222111
Q ss_pred CCCccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeeccCCCCCCCCCCCCcccCCCccchHHHHHHHHHHHHHHhHH
Q 013835 85 DPDLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFTMPWTPTSEFPHPLSRVKQPAGYRLSYQIVDSLIWLGIRDM 164 (435)
Q Consensus 85 ~~~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (435)
.+-+++.+++||+.+. -...-+.-+|-.+|+|.|++.-...... .++++....+.... ...
T Consensus 75 -~L~ki~~~~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA~~--------------qnkl~~Pla~~ii~---P~~ 135 (346)
T COG1817 75 -KLSKIIAEFKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHAEA--------------QNKLTLPLADVIIT---PEA 135 (346)
T ss_pred -HHHHHHhhcCCceEee-cCCcchhhHHhhcCCceEEecCChhHHH--------------Hhhcchhhhhheec---ccc
Confidence 1123456789999998 3344446789999999999742211000 00111000000000 000
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCCCCCCeeEeeCCCCcCCCCCCCCCCeeeecccccCCCCCCCchHHHHHHH--cCCCc
Q 013835 165 INDVRKKKLKLRPVTYLSGSQGFDSDVPHGYIWSPHLVPKPKDWGPKVDVVGFCFLDLASNYEPPESLVKWLE--AGSKP 242 (435)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~l~~~~~--~~~~~ 242 (435)
++...-...|-++.+.... +.+.++-++ ..+.++++..+-+. .+++.
T Consensus 136 ~~~~~~~~~G~~p~~i~~~--------------------------~giae~~~v-----~~f~pd~evlkeLgl~~~~~y 184 (346)
T COG1817 136 IDEEELLDFGADPNKISGY--------------------------NGIAELANV-----YGFVPDPEVLKELGLEEGETY 184 (346)
T ss_pred cchHHHHHhCCCccceecc--------------------------cceeEEeec-----ccCCCCHHHHHHcCCCCCCce
Confidence 1110000122222111110 000111110 01223333333332 22343
Q ss_pred EE---EeeCCCC--CCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcC-CCChhhhcccccEEEEeCCc
Q 013835 243 IY---IGFGSLP--VQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLD-NIPHDWLFLQCKAVVHHGGA 316 (435)
Q Consensus 243 v~---v~~Gs~~--~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~-~~p~~~~l~~~~l~I~hgG~ 316 (435)
|. .+.|+.. .......+..+++.|.+.+ .++ ........+.-+.-+|++.-. -+...+++-.|+++|+.||.
T Consensus 185 IVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~g-iV~-ipr~~~~~eife~~~n~i~pk~~vD~l~Llyya~lvig~ggT 262 (346)
T COG1817 185 IVMRPEPWGAHYDNGDRGISVLPDLIKELKKYG-IVL-IPREKEQAEIFEGYRNIIIPKKAVDTLSLLYYATLVIGAGGT 262 (346)
T ss_pred EEEeeccccceeeccccchhhHHHHHHHHHhCc-EEE-ecCchhHHHHHhhhccccCCcccccHHHHHhhhheeecCCch
Confidence 33 4555542 1223345677888888877 222 222222111112122332222 23445578999999998887
Q ss_pred hHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHhhccCcHH
Q 013835 317 GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAEAMEKEDGVT 395 (435)
Q Consensus 317 ~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~~~~~~~~~~ 395 (435)
+-.||+..|+|.|..= .+.-...-+++.+.|+=. . .-++.+..+.+.++| ++..++... ....+..+
T Consensus 263 -MarEaAlLGtpaIs~~-pGkll~vdk~lie~G~~~---~--s~~~~~~~~~a~~~l~~~~~kK~~~-----~k~e~~~~ 330 (346)
T COG1817 263 -MAREAALLGTPAISCY-PGKLLAVDKYLIEKGLLY---H--STDEIAIVEYAVRNLKYRRLKKTGV-----LKLEDPTR 330 (346)
T ss_pred -HHHHHHHhCCceEEec-CCccccccHHHHhcCcee---e--cCCHHHHHHHHHHHhhchhhccccc-----cccccHHH
Confidence 7789999999999763 222333445666666553 2 124455666666655 654332211 11224455
Q ss_pred HHHHHHHHhccc
Q 013835 396 GAVKAFFKHYSR 407 (435)
Q Consensus 396 ~~~~~i~~~l~~ 407 (435)
..++.++..++.
T Consensus 331 ~ii~~ve~~~e~ 342 (346)
T COG1817 331 LIIDVVEEMLET 342 (346)
T ss_pred HHHHHHHHHhhh
Confidence 667777666543
No 119
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.41 E-value=1.1e-05 Score=79.32 Aligned_cols=159 Identities=13% Similarity=0.104 Sum_probs=103.8
Q ss_pred CCcEEEeeCCCCCCC-hHHHHHHHHHHHHHh-CCeEEEEcCCCCCCC----C------CCCCCceEEcCCCChhhhcccc
Q 013835 240 SKPIYIGFGSLPVQE-PEKMTQIIVEAFEQT-GQRGIINKGWGGLGN----L------AEPKDSIYLLDNIPHDWLFLQC 307 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~-~~~~~~~~~~~~~~~-~~~~iv~~~~~~~~~----~------~~~~~~v~~~~~~p~~~~l~~~ 307 (435)
++.+++..|++.... .+.+++.+....+.. +.++++++++..... + ..+.++|.+.+.....++++++
T Consensus 292 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G~~~v~~~l~~a 371 (475)
T cd03813 292 EPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTGFQNVKEYLPKL 371 (475)
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcCCccHHHHHHhC
Confidence 456778888875432 233333222221222 456666654322111 1 1246899999966666669999
Q ss_pred cEEEEeC---C-chHHHHHHHhCCCEEeecCCCChhhHHHHHHHc------CCCCCCCCCCCCCHHHHHHHHHHhc-CHH
Q 013835 308 KAVVHHG---G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHAR------GVGPPPIPVDEFSLPKLINAINFML-DPK 376 (435)
Q Consensus 308 ~l~I~hg---G-~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~------g~G~~~l~~~~~~~~~l~~~i~~ll-~~~ 376 (435)
|++|..+ | .++++||+++|+|+|+. |.......+++. ..|+ .++.. +.++++++|.+++ |++
T Consensus 372 Dv~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~-lv~~~--d~~~la~ai~~ll~~~~ 444 (475)
T cd03813 372 DVLVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGE-VVPPA--DPEALARAILRLLKDPE 444 (475)
T ss_pred CEEEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceE-EECCC--CHHHHHHHHHHHhcCHH
Confidence 9999664 2 37899999999999964 444556666662 3675 55544 7899999999999 998
Q ss_pred HHHHHHHHHHHhhcc-CcHHHHHHHHHHhc
Q 013835 377 VKERAVELAEAMEKE-DGVTGAVKAFFKHY 405 (435)
Q Consensus 377 ~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l 405 (435)
.++++.+.+++.... -..+..++.+.++.
T Consensus 445 ~~~~~~~~a~~~v~~~~s~~~~~~~y~~lY 474 (475)
T cd03813 445 LRRAMGEAGRKRVERYYTLERMIDSYRRLY 474 (475)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 888887777664443 46777777776653
No 120
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.33 E-value=4.9e-06 Score=79.36 Aligned_cols=153 Identities=14% Similarity=0.075 Sum_probs=96.5
Q ss_pred CCcEEEeeCCCCCC-ChHHHHHHHHHHHHHh-CCeEEEEcCCCCCCCC------CCCCCceEEcCCCChh-hhcccccEE
Q 013835 240 SKPIYIGFGSLPVQ-EPEKMTQIIVEAFEQT-GQRGIINKGWGGLGNL------AEPKDSIYLLDNIPHD-WLFLQCKAV 310 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~-~~~~~~~~~~~~~~~~-~~~~iv~~~~~~~~~~------~~~~~~v~~~~~~p~~-~~l~~~~l~ 310 (435)
++..+++.|++... ....+++.+.+..+.. +.++++.+.+.....+ ..+++++.+.++.+.. .++.+||++
T Consensus 203 ~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~ 282 (372)
T cd04949 203 KPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLS 282 (372)
T ss_pred CCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEE
Confidence 34566777877432 2233333332222222 4566666544332211 1246789988865442 338999999
Q ss_pred EEeC---C-chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHH
Q 013835 311 VHHG---G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELA 385 (435)
Q Consensus 311 I~hg---G-~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~ 385 (435)
|.-+ | ..+++||+++|+|+|+..... .....++....|. .++.. +.++++++|..++ |++.++.+.+.+
T Consensus 283 v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~~~G~-lv~~~--d~~~la~~i~~ll~~~~~~~~~~~~a 356 (372)
T cd04949 283 LLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDGENGY-LVPKG--DIEALAEAIIELLNDPKLLQKFSEAA 356 (372)
T ss_pred EecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccCCCce-EeCCC--cHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 8654 2 468999999999999765331 2456777778896 66554 6899999999999 988777777666
Q ss_pred HHhhccCcHHHHH
Q 013835 386 EAMEKEDGVTGAV 398 (435)
Q Consensus 386 ~~~~~~~~~~~~~ 398 (435)
++..+.-..+.++
T Consensus 357 ~~~~~~~s~~~~~ 369 (372)
T cd04949 357 YENAERYSEENVW 369 (372)
T ss_pred HHHHHHhhHHHHH
Confidence 6554444444443
No 121
>PHA01630 putative group 1 glycosyl transferase
Probab=98.21 E-value=4e-05 Score=71.38 Aligned_cols=108 Identities=13% Similarity=0.049 Sum_probs=75.3
Q ss_pred CCCChhhh---cccccEEEEeC---C-chHHHHHHHhCCCEEeecCCC--Chh---hHHHHHHH-----------cCCCC
Q 013835 296 DNIPHDWL---FLQCKAVVHHG---G-AGTTAAGLRAACPTTIVPFFG--DQP---FWGERVHA-----------RGVGP 352 (435)
Q Consensus 296 ~~~p~~~~---l~~~~l~I~hg---G-~~s~~Eal~~G~P~l~~P~~~--dQ~---~na~~v~~-----------~g~G~ 352 (435)
.++|..++ ++.+|+++.-. | ..++.||+++|+|+|+....+ |.. .|+..++. .++|.
T Consensus 196 ~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~ 275 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGY 275 (331)
T ss_pred ccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccccc
Confidence 34777776 89999999532 2 468999999999999876443 322 12211211 24564
Q ss_pred CCCCCCCCCHHHHHHHHHHhc-C---HHHHHHHHHHHHHhhccCcHHHHHHHHHHhccc
Q 013835 353 PPIPVDEFSLPKLINAINFML-D---PKVKERAVELAEAMEKEDGVTGAVKAFFKHYSR 407 (435)
Q Consensus 353 ~~l~~~~~~~~~l~~~i~~ll-~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 407 (435)
.++. +.+++.+++.+++ | ++.++...+.++...+.-.++.+++.++++++.
T Consensus 276 -~v~~---~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 276 -FLDP---DIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred -ccCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 4443 4678888888888 6 577777777777777778999999999988753
No 122
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.19 E-value=3.2e-05 Score=73.78 Aligned_cols=163 Identities=15% Similarity=0.125 Sum_probs=98.7
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCC--CC-------CCCCCceEEcCCCChhhh---ccc
Q 013835 239 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLG--NL-------AEPKDSIYLLDNIPHDWL---FLQ 306 (435)
Q Consensus 239 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~--~~-------~~~~~~v~~~~~~p~~~~---l~~ 306 (435)
.+.++|.++.+..+..++ .++...++++..+.-.+|........ .+ .-.++++.+.+..+..+. +..
T Consensus 283 ~d~vvF~~fn~~~KI~p~-~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~ 361 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPE-TLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQL 361 (468)
T ss_dssp SSSEEEEE-S-GGG--HH-HHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG
T ss_pred CCceEEEecCccccCCHH-HHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhh
Confidence 345889999888776665 66778888888887777665433211 11 113688999998887665 688
Q ss_pred ccEEE---EeCCchHHHHHHHhCCCEEeecCCC-ChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHH
Q 013835 307 CKAVV---HHGGAGTTAAGLRAACPTTIVPFFG-DQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERA 381 (435)
Q Consensus 307 ~~l~I---~hgG~~s~~Eal~~G~P~l~~P~~~-dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~ 381 (435)
+|+++ ..+|.+|.+|||+.|||+|.+|-.. -...-+-.+..+|+.- .+ .. +.++..+....+- |++++++.
T Consensus 362 ~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~E-lI-A~--s~~eYv~~Av~La~D~~~l~~l 437 (468)
T PF13844_consen 362 ADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPE-LI-AD--SEEEYVEIAVRLATDPERLRAL 437 (468)
T ss_dssp -SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GG-GB--S--SHHHHHHHHHHHHH-HHHHHHH
T ss_pred CCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCch-hc-CC--CHHHHHHHHHHHhCCHHHHHHH
Confidence 99998 4568889999999999999998443 3344555777778873 33 23 6788888888888 98877777
Q ss_pred HHHHHHhh-cc--CcHHHHHHHHHHhcc
Q 013835 382 VELAEAME-KE--DGVTGAVKAFFKHYS 406 (435)
Q Consensus 382 ~~~~~~~~-~~--~~~~~~~~~i~~~l~ 406 (435)
++--++.+ +. -..++.+..+|+.++
T Consensus 438 R~~Lr~~~~~SpLfd~~~~ar~lE~a~~ 465 (468)
T PF13844_consen 438 RAKLRDRRSKSPLFDPKRFARNLEAAYR 465 (468)
T ss_dssp HHHHHHHHHHSGGG-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 65444332 22 356677777777654
No 123
>PLN02949 transferase, transferring glycosyl groups
Probab=98.16 E-value=3.8e-05 Score=74.74 Aligned_cols=155 Identities=12% Similarity=0.016 Sum_probs=94.9
Q ss_pred CcEEEeeCCCCCCChHHHHHHHHHHHHH---------hCCeEEEEcCCCCCC------CCC------CCCCceEEcCCCC
Q 013835 241 KPIYIGFGSLPVQEPEKMTQIIVEAFEQ---------TGQRGIINKGWGGLG------NLA------EPKDSIYLLDNIP 299 (435)
Q Consensus 241 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~~---------~~~~~iv~~~~~~~~------~~~------~~~~~v~~~~~~p 299 (435)
+..+++.|.+.... -...++++++. .+.+++++++....+ .+. .+.++|.+.+++|
T Consensus 268 ~~~il~vGR~~~~K---g~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~ 344 (463)
T PLN02949 268 PPYIISVAQFRPEK---AHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVS 344 (463)
T ss_pred CCEEEEEEeeeccC---CHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCC
Confidence 35667778765322 23334455443 245677776543211 111 2568999999999
Q ss_pred hhhh---cccccEEEEeC---Cc-hHHHHHHHhCCCEEeecCCC---ChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHH
Q 013835 300 HDWL---FLQCKAVVHHG---GA-GTTAAGLRAACPTTIVPFFG---DQPFWGERVHARGVGPPPIPVDEFSLPKLINAI 369 (435)
Q Consensus 300 ~~~~---l~~~~l~I~hg---G~-~s~~Eal~~G~P~l~~P~~~---dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i 369 (435)
.+++ +++|+++|+-. |+ .++.||+++|+|+|+....+ |...+. .....|. .. + +.++++++|
T Consensus 345 ~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~---~~g~tG~-l~--~--~~~~la~ai 416 (463)
T PLN02949 345 YRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDE---DGQQTGF-LA--T--TVEEYADAI 416 (463)
T ss_pred HHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecC---CCCcccc-cC--C--CHHHHHHHH
Confidence 8877 89999999432 22 48999999999999986543 111110 0012464 33 2 789999999
Q ss_pred HHhc-C-HHHHHHHHHHHHHhhccCcHHHHHHHHHHhcc
Q 013835 370 NFML-D-PKVKERAVELAEAMEKEDGVTGAVKAFFKHYS 406 (435)
Q Consensus 370 ~~ll-~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 406 (435)
.+++ + ++.++++.+.+++..+.-+.++.++.+++.+.
T Consensus 417 ~~ll~~~~~~r~~m~~~ar~~~~~FS~e~~~~~~~~~i~ 455 (463)
T PLN02949 417 LEVLRMRETERLEIAAAARKRANRFSEQRFNEDFKDAIR 455 (463)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 9998 4 66666665555554444566666665555443
No 124
>PRK14098 glycogen synthase; Provisional
Probab=98.13 E-value=2.1e-05 Score=77.40 Aligned_cols=161 Identities=11% Similarity=0.044 Sum_probs=98.3
Q ss_pred CcEEEeeCCCCCCChH-HHHHHHHHHHHHhCCeEEEEcCCCC--CCCC----CCCCCceEEcCCCChhhh---cccccEE
Q 013835 241 KPIYIGFGSLPVQEPE-KMTQIIVEAFEQTGQRGIINKGWGG--LGNL----AEPKDSIYLLDNIPHDWL---FLQCKAV 310 (435)
Q Consensus 241 ~~v~v~~Gs~~~~~~~-~~~~~~~~~~~~~~~~~iv~~~~~~--~~~~----~~~~~~v~~~~~~p~~~~---l~~~~l~ 310 (435)
..+++..|.+.....- .+++ .+..+.+.+.++++.+.+.. .+.+ .+.+++|.+.+.++...+ ++.+|++
T Consensus 307 ~~~i~~vgRl~~~KG~d~li~-a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi~ 385 (489)
T PRK14098 307 TPLVGVIINFDDFQGAELLAE-SLEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGLDML 385 (489)
T ss_pred CCEEEEeccccccCcHHHHHH-HHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhCCEE
Confidence 4678888888654332 2333 22333334677777764321 1122 125678999998887654 8999999
Q ss_pred EEeCCc----hHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc----CHHHHHHHH
Q 013835 311 VHHGGA----GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML----DPKVKERAV 382 (435)
Q Consensus 311 I~hgG~----~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll----~~~~~~~~~ 382 (435)
+..+-. .+.+||+++|+|.|+....+-........+..+.|. .++.. +++++.++|.+++ |++.++++.
T Consensus 386 l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~-l~~~~--d~~~la~ai~~~l~~~~~~~~~~~~~ 462 (489)
T PRK14098 386 LMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGF-IFHDY--TPEALVAKLGEALALYHDEERWEELV 462 (489)
T ss_pred EeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCcee-EeCCC--CHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 976532 578999999999888765432111111122346786 66544 6899999998753 555544443
Q ss_pred HHHHHhhccCcHHHHHHHHHHhccc
Q 013835 383 ELAEAMEKEDGVTGAVKAFFKHYSR 407 (435)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~i~~~l~~ 407 (435)
+. ...+.-++++.++.+++++++
T Consensus 463 ~~--~~~~~fsw~~~a~~y~~lY~~ 485 (489)
T PRK14098 463 LE--AMERDFSWKNSAEEYAQLYRE 485 (489)
T ss_pred HH--HhcCCCChHHHHHHHHHHHHH
Confidence 21 122334888888888777653
No 125
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.07 E-value=0.00017 Score=66.11 Aligned_cols=191 Identities=18% Similarity=0.119 Sum_probs=107.9
Q ss_pred Ceeee-cccccCCCCCCCchHHHHHH--HcCCCcEEEeeCCCCCCChHHHHHHHHHHHHHh-----CCeEEEEcCCCCCC
Q 013835 212 VDVVG-FCFLDLASNYEPPESLVKWL--EAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----GQRGIINKGWGGLG 283 (435)
Q Consensus 212 ~~~vG-~~~~~~~~~~~~~~~l~~~~--~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~-----~~~~iv~~~~~~~~ 283 (435)
..|+| |+. +.-......+.+.+-+ +.+++++.+.-||-.. +...+...+.++.+.+ +.++++-+.....+
T Consensus 158 ~~yVGHpl~-d~i~~~~~r~~ar~~l~~~~~~~~lalLPGSR~s-EI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~~ 235 (381)
T COG0763 158 CTYVGHPLA-DEIPLLPDREAAREKLGIDADEKTLALLPGSRRS-EIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKYR 235 (381)
T ss_pred eEEeCChhh-hhccccccHHHHHHHhCCCCCCCeEEEecCCcHH-HHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHHH
Confidence 78888 543 2221223344444444 3345699999999632 2233444444444433 46788776443211
Q ss_pred CCCC--CCCce-EEcCCC-C--hhhhcccccEEEEeCCchHHHHHHHhCCCEEeec--CCCChhhHHHHHHHcC-CCCC-
Q 013835 284 NLAE--PKDSI-YLLDNI-P--HDWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVP--FFGDQPFWGERVHARG-VGPP- 353 (435)
Q Consensus 284 ~~~~--~~~~v-~~~~~~-p--~~~~l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P--~~~dQ~~na~~v~~~g-~G~~- 353 (435)
.... ...+. ...-++ + ..+.+..||+.+.-+|. .++|+..+|+|||+.= .+.+ ..-+++..+.. +++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it-~~iak~lvk~~yisLpN 313 (381)
T COG0763 236 RIIEEALKWEVAGLSLILIDGEKRKAFAAADAALAASGT-ATLEAALAGTPMVVAYKVKPIT-YFIAKRLVKLPYVSLPN 313 (381)
T ss_pred HHHHHHhhccccCceEEecCchHHHHHHHhhHHHHhccH-HHHHHHHhCCCEEEEEeccHHH-HHHHHHhccCCcccchH
Confidence 1110 10111 111122 2 22348999999999998 7899999999999852 1111 12233333221 1110
Q ss_pred ---------CCCCCCCCHHHHHHHHHHhc-CH----HHHHHHHHHHHHhhccCcHHHHHHHHHHhcc
Q 013835 354 ---------PIPVDEFSLPKLINAINFML-DP----KVKERAVELAEAMEKEDGVTGAVKAFFKHYS 406 (435)
Q Consensus 354 ---------~l~~~~~~~~~l~~~i~~ll-~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 406 (435)
.+-.++.+++.|.+++..++ |. ++.+...++.+.+......+.+++.+.+++.
T Consensus 314 Ii~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 314 ILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLREDPASEIAAQAVLELLL 380 (381)
T ss_pred HhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhc
Confidence 11124568999999999999 76 5666677777776655467788888877653
No 126
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=98.01 E-value=0.00012 Score=68.44 Aligned_cols=122 Identities=15% Similarity=0.086 Sum_probs=86.5
Q ss_pred CCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh---cccccEEEEeC--------Cc------hHHHHHHHhCCCEEee
Q 013835 270 GQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL---FLQCKAVVHHG--------GA------GTTAAGLRAACPTTIV 332 (435)
Q Consensus 270 ~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~---l~~~~l~I~hg--------G~------~s~~Eal~~G~P~l~~ 332 (435)
+.++++++.+.... ...+||.+.+|+|.+++ ++..-.+|..+ .+ +-+.++|++|+|+|+.
T Consensus 190 ~~~l~i~G~g~~~~---~~~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~ 266 (333)
T PRK09814 190 GIKLTVFGPNPEDL---ENSANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW 266 (333)
T ss_pred CCeEEEECCCcccc---ccCCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC
Confidence 45666665333222 45679999999999988 45422222221 11 3488899999999964
Q ss_pred cCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 013835 333 PFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD---PKVKERAVELAEAMEKEDGVTGAVKAFFK 403 (435)
Q Consensus 333 P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 403 (435)
+....++.+++.++|+ .++ +.+++.+++.++.+ .++++++++++++++...-.+++++.++.
T Consensus 267 ----~~~~~~~~V~~~~~G~-~v~----~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~g~~~~~~~~~~~~ 331 (333)
T PRK09814 267 ----SKAAIADFIVENGLGF-VVD----SLEELPEIIDNITEEEYQEMVENVKKISKLLRNGYFTKKALVDAIK 331 (333)
T ss_pred ----CCccHHHHHHhCCceE-EeC----CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHh
Confidence 5667889999999997 665 56899999988763 45788888888888877667777666554
No 127
>PHA01633 putative glycosyl transferase group 1
Probab=97.87 E-value=0.00027 Score=65.33 Aligned_cols=125 Identities=10% Similarity=0.102 Sum_probs=75.4
Q ss_pred CcEEEeeCCCCCCChHHHHHHHHHHHHHh----C-----CeEEEEcCCCCCCCCCCCCCceEEc---CCCChhhh---cc
Q 013835 241 KPIYIGFGSLPVQEPEKMTQIIVEAFEQT----G-----QRGIINKGWGGLGNLAEPKDSIYLL---DNIPHDWL---FL 305 (435)
Q Consensus 241 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~----~-----~~~iv~~~~~~~~~~~~~~~~v~~~---~~~p~~~~---l~ 305 (435)
..+++..|++..... ++.++++++.+ + .++++. |...... ..++++|.+. ++++.+++ ++
T Consensus 148 ~~~i~~vGRl~~~KG---~~~LI~A~~~L~~~~p~~~~~i~l~iv-G~~~~~~-l~l~~~V~f~g~~G~~~~~dl~~~y~ 222 (335)
T PHA01633 148 TIKFGIVSGLTKRKN---MDLMLQVFNELNTKYPDIAKKIHFFVI-SHKQFTQ-LEVPANVHFVAEFGHNSREYIFAFYG 222 (335)
T ss_pred CeEEEEEeCCccccC---HHHHHHHHHHHHHhCCCccccEEEEEE-cHHHHHH-cCCCCcEEEEecCCCCCHHHHHHHHH
Confidence 466777788754332 23345555433 1 134433 3222111 1356789988 45566555 89
Q ss_pred cccEEEEeC---C-chHHHHHHHhCCCEEeecCC------CCh------hhHHHHHH--HcCCCCCCCCCCCCCHHHHHH
Q 013835 306 QCKAVVHHG---G-AGTTAAGLRAACPTTIVPFF------GDQ------PFWGERVH--ARGVGPPPIPVDEFSLPKLIN 367 (435)
Q Consensus 306 ~~~l~I~hg---G-~~s~~Eal~~G~P~l~~P~~------~dQ------~~na~~v~--~~g~G~~~l~~~~~~~~~l~~ 367 (435)
++|+||..+ | .++++||+++|+|+|+.-.. +++ ..+..-.. +.|.|. .++ ..+++++++
T Consensus 223 ~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~-~~~--~~d~~~la~ 299 (335)
T PHA01633 223 AMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKW-KIH--KFQIEDMAN 299 (335)
T ss_pred hCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCcee-eec--CCCHHHHHH
Confidence 999999865 2 36899999999999986321 222 22222222 346664 443 458999999
Q ss_pred HHHHhc
Q 013835 368 AINFML 373 (435)
Q Consensus 368 ~i~~ll 373 (435)
+|.+++
T Consensus 300 ai~~~~ 305 (335)
T PHA01633 300 AIILAF 305 (335)
T ss_pred HHHHHH
Confidence 999985
No 128
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.78 E-value=2.3e-05 Score=62.76 Aligned_cols=121 Identities=13% Similarity=0.090 Sum_probs=65.7
Q ss_pred cEEEeeCCCCC-CChHHHHHHHHHHHHHh--CCeEEEEcCCCCCCCCCCC-CCceEEcCCCChh-hhcccccEEEEeC--
Q 013835 242 PIYIGFGSLPV-QEPEKMTQIIVEAFEQT--GQRGIINKGWGGLGNLAEP-KDSIYLLDNIPHD-WLFLQCKAVVHHG-- 314 (435)
Q Consensus 242 ~v~v~~Gs~~~-~~~~~~~~~~~~~~~~~--~~~~iv~~~~~~~~~~~~~-~~~v~~~~~~p~~-~~l~~~~l~I~hg-- 314 (435)
+.++++|+... ...+.+++.+++.+.+. +..+.+.++..+ .+.+. .+||.+.++++.. ++++++|++|.-.
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~--~l~~~~~~~v~~~g~~~e~~~~l~~~dv~l~p~~~ 80 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD--ELKRLRRPNVRFHGFVEELPEILAAADVGLIPSRF 80 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS---HHCCHHHCTEEEE-S-HHHHHHHHC-SEEEE-BSS
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH--HHHHhcCCCEEEcCCHHHHHHHHHhCCEEEEEeeC
Confidence 34566776643 23344444233334332 456666554222 24443 5699999999421 1289999988743
Q ss_pred --C-chHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013835 315 --G-AGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 373 (435)
Q Consensus 315 --G-~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll 373 (435)
| .+++.|++++|+|+|+.+. .....++..+.|. .+ .+ +++++.++|++++
T Consensus 81 ~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~~~~~-~~-~~--~~~~l~~~i~~l~ 133 (135)
T PF13692_consen 81 NEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEEDGCGV-LV-AN--DPEELAEAIERLL 133 (135)
T ss_dssp -SCC-HHHHHHHCTT--EEEEHH-----HCHCHS---SEEE-E--TT---HHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHhCCCEEECCc-----chhhheeecCCeE-EE-CC--CHHHHHHHHHHHh
Confidence 2 4899999999999998765 1334555567775 44 23 7899999999987
No 129
>PRK14099 glycogen synthase; Provisional
Probab=97.76 E-value=0.0002 Score=70.49 Aligned_cols=158 Identities=13% Similarity=0.077 Sum_probs=92.2
Q ss_pred cEEEeeCCCCCCChHHHHHHHHHHHHH---hCCeEEEEcCCCC--CCCCC----CCCCce-EEcCCCChhh-hc-ccccE
Q 013835 242 PIYIGFGSLPVQEPEKMTQIIVEAFEQ---TGQRGIINKGWGG--LGNLA----EPKDSI-YLLDNIPHDW-LF-LQCKA 309 (435)
Q Consensus 242 ~v~v~~Gs~~~~~~~~~~~~~~~~~~~---~~~~~iv~~~~~~--~~~~~----~~~~~v-~~~~~~p~~~-~l-~~~~l 309 (435)
.++...|++..... ++.+++++.. .+.++++.+.+.. .+.+. +.++++ .+.++-.... ++ +.+|+
T Consensus 296 ~li~~VgRL~~~KG---~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~aDi 372 (485)
T PRK14099 296 LLLGVISRLSWQKG---LDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQAGADA 372 (485)
T ss_pred cEEEEEecCCcccc---HHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhcCCE
Confidence 56667788764333 2334444443 3667777664321 11121 235565 5677732211 24 67999
Q ss_pred EEEeCC----chHHHHHHHhCCCEEeecCCC--ChhhHHH-HHHHc--CCCCCCCCCCCCCHHHHHHHHHH---hc-CHH
Q 013835 310 VVHHGG----AGTTAAGLRAACPTTIVPFFG--DQPFWGE-RVHAR--GVGPPPIPVDEFSLPKLINAINF---ML-DPK 376 (435)
Q Consensus 310 ~I~hgG----~~s~~Eal~~G~P~l~~P~~~--dQ~~na~-~v~~~--g~G~~~l~~~~~~~~~l~~~i~~---ll-~~~ 376 (435)
|+..+= ..+.+||+++|+|.|+....+ |-..... ..+.. +.|+ .++.. +++++.++|.+ ++ |++
T Consensus 373 fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~-l~~~~--d~~~La~ai~~a~~l~~d~~ 449 (485)
T PRK14099 373 LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGV-QFSPV--TADALAAALRKTAALFADPV 449 (485)
T ss_pred EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceE-EeCCC--CHHHHHHHHHHHHHHhcCHH
Confidence 997553 258899999998777654332 2221111 11111 5686 66554 78999999986 66 888
Q ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHhccc
Q 013835 377 VKERAVELAEAMEKEDGVTGAVKAFFKHYSR 407 (435)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 407 (435)
.++++.+.+. ...-++++.++..++++++
T Consensus 450 ~~~~l~~~~~--~~~fSw~~~a~~y~~lY~~ 478 (485)
T PRK14099 450 AWRRLQRNGM--TTDVSWRNPAQHYAALYRS 478 (485)
T ss_pred HHHHHHHHhh--hhcCChHHHHHHHHHHHHH
Confidence 7777666443 2345777887777776654
No 130
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=97.60 E-value=0.0074 Score=55.40 Aligned_cols=97 Identities=11% Similarity=0.161 Sum_probs=60.7
Q ss_pred CCcEEEeeCCC---CCCChH---HHHHHHHHHHHHhCCeEEEEcCCCCCCCC----C---CCCCceEEcCCC---Chhhh
Q 013835 240 SKPIYIGFGSL---PVQEPE---KMTQIIVEAFEQTGQRGIINKGWGGLGNL----A---EPKDSIYLLDNI---PHDWL 303 (435)
Q Consensus 240 ~~~v~v~~Gs~---~~~~~~---~~~~~~~~~~~~~~~~~iv~~~~~~~~~~----~---~~~~~v~~~~~~---p~~~~ 303 (435)
++.+.|-.|.- .....+ ++.+.+.+..+..+..+.+++........ . +....+.+.+-- |+...
T Consensus 146 ~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~ 225 (311)
T PF06258_consen 146 RPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGF 225 (311)
T ss_pred CCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHH
Confidence 45666555543 223333 45555555555567678888766543221 1 123455344433 45556
Q ss_pred cccccEEEEeCC-chHHHHHHHhCCCEEeecCCC
Q 013835 304 FLQCKAVVHHGG-AGTTAAGLRAACPTTIVPFFG 336 (435)
Q Consensus 304 l~~~~l~I~hgG-~~s~~Eal~~G~P~l~~P~~~ 336 (435)
|+.||.++.=+. .|+++||++.|+|+.+++...
T Consensus 226 La~ad~i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 226 LAAADAIVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred HHhCCEEEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 999997666655 589999999999999998776
No 131
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=97.57 E-value=0.0075 Score=54.64 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=65.8
Q ss_pred cEEEeeCCC-CCCChHHHHHHHHHHHHHh-CCeEEEEcCCCCCCCCCC------CCCceEEcCCCChhhh---cccccEE
Q 013835 242 PIYIGFGSL-PVQEPEKMTQIIVEAFEQT-GQRGIINKGWGGLGNLAE------PKDSIYLLDNIPHDWL---FLQCKAV 310 (435)
Q Consensus 242 ~v~v~~Gs~-~~~~~~~~~~~~~~~~~~~-~~~~iv~~~~~~~~~~~~------~~~~v~~~~~~p~~~~---l~~~~l~ 310 (435)
...+..+.+ .+...+.+.+.+.+.+++. +.++++.+.+.....+++ +.++|.+.+-+|.+++ +.+-|+|
T Consensus 196 ~~ivv~sRLvyrKGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IF 275 (426)
T KOG1111|consen 196 ITIVVASRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIF 275 (426)
T ss_pred eEEEEEeeeeeccchHHHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEE
Confidence 334444555 3444555666666666654 578888775554333332 5789999999999998 9999999
Q ss_pred EEeCCc----hHHHHHHHhCCCEEeec
Q 013835 311 VHHGGA----GTTAAGLRAACPTTIVP 333 (435)
Q Consensus 311 I~hgG~----~s~~Eal~~G~P~l~~P 333 (435)
++-+-. .++.||+++|.|++..-
T Consensus 276 lntSlTEafc~~ivEAaScGL~VVsTr 302 (426)
T KOG1111|consen 276 LNTSLTEAFCMVIVEAASCGLPVVSTR 302 (426)
T ss_pred eccHHHHHHHHHHHHHHhCCCEEEEee
Confidence 988854 57899999999999643
No 132
>PLN02939 transferase, transferring glycosyl groups
Probab=97.53 E-value=0.0012 Score=68.19 Aligned_cols=159 Identities=14% Similarity=0.115 Sum_probs=96.6
Q ss_pred CcEEEeeCCCCCCChHHHHHHHHHHHH---HhCCeEEEEcCCCCC---CCCC------CCCCceEEcCCCChh---hhcc
Q 013835 241 KPIYIGFGSLPVQEPEKMTQIIVEAFE---QTGQRGIINKGWGGL---GNLA------EPKDSIYLLDNIPHD---WLFL 305 (435)
Q Consensus 241 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~---~~~~~~iv~~~~~~~---~~~~------~~~~~v~~~~~~p~~---~~l~ 305 (435)
.+++...|.+.....- +.+++++. ..+.++++++.+... ..+. ...++|.+..+.+.. .+++
T Consensus 779 ~pLIg~VGRL~~QKGi---DlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYA 855 (977)
T PLN02939 779 QPLVGCITRLVPQKGV---HLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYA 855 (977)
T ss_pred ceEEEEeecCCcccCh---HHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHH
Confidence 3677888888654432 23444443 236777776644221 1111 135689999888765 3599
Q ss_pred cccEEEEeCC----chHHHHHHHhCCCEEeecCCC--ChhhH--HHHH-HHcCCCCCCCCCCCCCHHHHHHHHHHhc---
Q 013835 306 QCKAVVHHGG----AGTTAAGLRAACPTTIVPFFG--DQPFW--GERV-HARGVGPPPIPVDEFSLPKLINAINFML--- 373 (435)
Q Consensus 306 ~~~l~I~hgG----~~s~~Eal~~G~P~l~~P~~~--dQ~~n--a~~v-~~~g~G~~~l~~~~~~~~~l~~~i~~ll--- 373 (435)
.+|+||..+= ..+.+||+++|+|.|+....+ |-..+ ...+ +..+.|. .++.. +++++.++|.+++
T Consensus 856 aADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGf-Lf~~~--D~eaLa~AL~rAL~~~ 932 (977)
T PLN02939 856 ASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGF-TFLTP--DEQGLNSALERAFNYY 932 (977)
T ss_pred hCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceE-EecCC--CHHHHHHHHHHHHHHh
Confidence 9999997652 258999999999999876554 22111 1111 2235675 55543 7788888887653
Q ss_pred --CHHHHHHHHHHHHHhhccCcHHHHHHHHHHhccc
Q 013835 374 --DPKVKERAVELAEAMEKEDGVTGAVKAFFKHYSR 407 (435)
Q Consensus 374 --~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 407 (435)
|++.+.++.+- .+...-+++..++.+++++..
T Consensus 933 ~~dpe~~~~L~~~--am~~dFSWe~~A~qYeeLY~~ 966 (977)
T PLN02939 933 KRKPEVWKQLVQK--DMNIDFSWDSSASQYEELYQR 966 (977)
T ss_pred ccCHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHH
Confidence 57776666542 222334777777777766543
No 133
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0034 Score=60.33 Aligned_cols=159 Identities=13% Similarity=0.148 Sum_probs=104.9
Q ss_pred CcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCC-----------CCCCceEEcCCCChhhh---ccc
Q 013835 241 KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLA-----------EPKDSIYLLDNIPHDWL---FLQ 306 (435)
Q Consensus 241 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~-----------~~~~~v~~~~~~p~~~~---l~~ 306 (435)
-+||++++...+..++ .+....++++..+..++|..++++.+.+. --++++++.+-.|..+. +.-
T Consensus 430 avVf~c~~n~~K~~pe-v~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~i 508 (620)
T COG3914 430 AVVFCCFNNYFKITPE-VFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGI 508 (620)
T ss_pred eEEEEecCCcccCCHH-HHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhch
Confidence 4899999998877766 66778899999998888887765433221 13688999998888766 899
Q ss_pred ccEEE---EeCCchHHHHHHHhCCCEEeecCCCChhh--HHH-HHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHH
Q 013835 307 CKAVV---HHGGAGTTAAGLRAACPTTIVPFFGDQPF--WGE-RVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKE 379 (435)
Q Consensus 307 ~~l~I---~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~--na~-~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~ 379 (435)
+|+|+ --||+.|..|+|+.|+|+|..+ ++|+. |+. .+..+|+-- .+ .. +.++-.+.-..+- |...++
T Consensus 509 ADlvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e-~v-A~--s~~dYV~~av~~g~dral~q 582 (620)
T COG3914 509 ADLVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPE-LV-AD--SRADYVEKAVAFGSDRALRQ 582 (620)
T ss_pred hheeeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCch-hh-cC--CHHHHHHHHHHhcccHHHHH
Confidence 99999 4689999999999999999654 56653 222 344445442 22 11 4455555444554 665555
Q ss_pred HHHHHHHHhhcc---CcHHHHHHHHHHhcc
Q 013835 380 RAVELAEAMEKE---DGVTGAVKAFFKHYS 406 (435)
Q Consensus 380 ~~~~~~~~~~~~---~~~~~~~~~i~~~l~ 406 (435)
+.+.--++-+.. -..+..++.+|.++.
T Consensus 583 ~~r~~l~~~r~tspL~d~~~far~le~~y~ 612 (620)
T COG3914 583 QVRAELKRSRQTSPLFDPKAFARKLETLYW 612 (620)
T ss_pred hhHHHHHhccccCcccCHHHHHHHHHHHHH
Confidence 554333332222 145666677776553
No 134
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=97.34 E-value=0.0032 Score=62.21 Aligned_cols=103 Identities=13% Similarity=0.164 Sum_probs=82.2
Q ss_pred CceEEcCCCChhhh---cccccEEEEeC---CchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHH
Q 013835 290 DSIYLLDNIPHDWL---FLQCKAVVHHG---GAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLP 363 (435)
Q Consensus 290 ~~v~~~~~~p~~~~---l~~~~l~I~hg---G~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~ 363 (435)
..|.+.++....++ +..+.++|.-+ |.++.+||+++|+|+| .......|+....|. ++. +.+
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~~NG~-li~----d~~ 476 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHNKNGY-IID----DIS 476 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcCCCcE-EeC----CHH
Confidence 68999998885555 99999999877 6689999999999999 444567888888996 772 789
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHhhccCcHHHHHHHHHHh
Q 013835 364 KLINAINFML-DPKVKERAVELAEAMEKEDGVTGAVKAFFKH 404 (435)
Q Consensus 364 ~l~~~i~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 404 (435)
+|.++|..+| +++-+.++..-+-+....-+.+.++..+.++
T Consensus 477 ~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS~~~i~~kW~~~ 518 (519)
T TIGR03713 477 ELLKALDYYLDNLKNWNYSLAYSIKLIDDYSSENIIERLNEL 518 (519)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 9999999999 9887777777666666666666666666554
No 135
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.049 Score=49.27 Aligned_cols=123 Identities=15% Similarity=0.122 Sum_probs=76.4
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHHHHHHh-----------CCeEEEEcCCCCCCC-----CCC-CCCceE-EcCCCCh
Q 013835 239 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-----------GQRGIINKGWGGLGN-----LAE-PKDSIY-LLDNIPH 300 (435)
Q Consensus 239 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~-----------~~~~iv~~~~~~~~~-----~~~-~~~~v~-~~~~~p~ 300 (435)
.+|.++||..|.. +++-+..+++|+... +.-..+.+|.++..+ +.+ .-.+|. ...|+..
T Consensus 253 ~~pallvsSTswT---pDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGPlkE~Y~~~I~~~~~~~v~~~tpWL~a 329 (444)
T KOG2941|consen 253 ERPALLVSSTSWT---PDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGPLKEKYSQEIHEKNLQHVQVCTPWLEA 329 (444)
T ss_pred CCCeEEEecCCCC---CcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCchhHHHHHHHHHhcccceeeeeccccc
Confidence 4568889887775 444566677777521 222334455443221 111 123443 3458877
Q ss_pred hhh---cccccEEEEe----CCc---hHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHH
Q 013835 301 DWL---FLQCKAVVHH----GGA---GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAIN 370 (435)
Q Consensus 301 ~~~---l~~~~l~I~h----gG~---~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~ 370 (435)
++. +++||+=|+- +|. .-+..-.-+|+|++.+-+. .--+.|+....|+ +.. +.++|++.+.
T Consensus 330 EDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fk----cl~ELVkh~eNGl-vF~----Ds~eLa~ql~ 400 (444)
T KOG2941|consen 330 EDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFK----CLDELVKHGENGL-VFE----DSEELAEQLQ 400 (444)
T ss_pred ccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecch----hHHHHHhcCCCce-Eec----cHHHHHHHHH
Confidence 665 8999977642 332 4577778899999976543 2336677778886 543 6799999888
Q ss_pred Hhc
Q 013835 371 FML 373 (435)
Q Consensus 371 ~ll 373 (435)
.++
T Consensus 401 ~lf 403 (444)
T KOG2941|consen 401 MLF 403 (444)
T ss_pred HHH
Confidence 877
No 136
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=97.29 E-value=0.012 Score=57.27 Aligned_cols=102 Identities=15% Similarity=0.176 Sum_probs=68.0
Q ss_pred EEcCCCChhhh---cccccEEEEeC---Cc-hHHHHHHHhCCC----EEeecCCCChhhHHHHHHHcCCCCCCCCCCCCC
Q 013835 293 YLLDNIPHDWL---FLQCKAVVHHG---GA-GTTAAGLRAACP----TTIVPFFGDQPFWGERVHARGVGPPPIPVDEFS 361 (435)
Q Consensus 293 ~~~~~~p~~~~---l~~~~l~I~hg---G~-~s~~Eal~~G~P----~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~ 361 (435)
.+.+.++.+++ ++.+|+++.-+ |+ .++.||+++|+| +|+.-..+- +..+ +.|+ .+++. +
T Consensus 339 ~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~~l---~~gl-lVnP~--d 408 (456)
T TIGR02400 339 YLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQEL---NGAL-LVNPY--D 408 (456)
T ss_pred EEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hHHh---CCcE-EECCC--C
Confidence 34456778877 89999999755 54 688999999999 776554442 2223 2465 56654 7
Q ss_pred HHHHHHHHHHhc--CH-HHHHHHHHHHHHhhccCcHHHHHHHHHHhc
Q 013835 362 LPKLINAINFML--DP-KVKERAVELAEAMEKEDGVTGAVKAFFKHY 405 (435)
Q Consensus 362 ~~~l~~~i~~ll--~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 405 (435)
.++++++|.+++ ++ +.+++.+++.+... ......-++.+.+.+
T Consensus 409 ~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~-~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 409 IDGMADAIARALTMPLEEREERHRAMMDKLR-KNDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-hCCHHHHHHHHHHHh
Confidence 899999999988 33 44555555555544 466666666554433
No 137
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.18 E-value=0.039 Score=50.25 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=34.1
Q ss_pred cccCCccchhHHHHHHHHHHHCC--CeEEEEeCCCcHHHHHhc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYG--HRVRLATHSNFKDFVLTA 42 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rG--h~V~~~~~~~~~~~~~~~ 42 (435)
+-..+.|++.-+.++.++|+++. .+|++++.+...+.++..
T Consensus 5 i~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~ 47 (279)
T cd03789 5 IRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM 47 (279)
T ss_pred EecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC
Confidence 34568899999999999999874 899999998777776654
No 138
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.17 E-value=0.012 Score=54.70 Aligned_cols=155 Identities=20% Similarity=0.232 Sum_probs=92.4
Q ss_pred cEEEeeCCCCCCChHHHHHHHHHHHHHh----C-CeEEEEcCCCCC-CCC----C--CCCCceEEcCCCChhhh---ccc
Q 013835 242 PIYIGFGSLPVQEPEKMTQIIVEAFEQT----G-QRGIINKGWGGL-GNL----A--EPKDSIYLLDNIPHDWL---FLQ 306 (435)
Q Consensus 242 ~v~v~~Gs~~~~~~~~~~~~~~~~~~~~----~-~~~iv~~~~~~~-~~~----~--~~~~~v~~~~~~p~~~~---l~~ 306 (435)
.+++..|..... +-++.+++++... + ..+++...+... +.+ . ....++.+.++++..++ +..
T Consensus 200 ~~i~~~g~~~~~---k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 276 (381)
T COG0438 200 FVVLYVGRLDPE---KGLDLLIEAAAKLKKRGPDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLAS 276 (381)
T ss_pred eEEEEeeccChh---cCHHHHHHHHHHhhhhcCCeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHh
Confidence 567777776441 1223344444433 2 345555433321 011 1 12478888999984333 777
Q ss_pred ccEEEEe---CCc-hHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHH
Q 013835 307 CKAVVHH---GGA-GTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERA 381 (435)
Q Consensus 307 ~~l~I~h---gG~-~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~ 381 (435)
+++++.. .|. .++.||+++|+|+|.. +.......+...+.|. .+... +.+++.+++..++ +++.++..
T Consensus 277 ~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~----~~~~~~e~~~~~~~g~-~~~~~--~~~~~~~~i~~~~~~~~~~~~~ 349 (381)
T COG0438 277 ADVFVLPSLSEGFGLVLLEAMAAGTPVIAS----DVGGIPEVVEDGETGL-LVPPG--DVEELADALEQLLEDPELREEL 349 (381)
T ss_pred CCEEEeccccccchHHHHHHHhcCCcEEEC----CCCChHHHhcCCCceE-ecCCC--CHHHHHHHHHHHhcCHHHHHHH
Confidence 8999887 244 4469999999999844 4444455555554563 34333 6899999999999 77666666
Q ss_pred HH-HHHHhhccCcHHHHHHHHHHhcc
Q 013835 382 VE-LAEAMEKEDGVTGAVKAFFKHYS 406 (435)
Q Consensus 382 ~~-~~~~~~~~~~~~~~~~~i~~~l~ 406 (435)
.+ ..+.+...-.++..+..+.+.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (381)
T COG0438 350 GEAARERVEEEFSWERIAEQLLELYE 375 (381)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 65 33444345567766666555543
No 139
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=97.15 E-value=0.0096 Score=58.35 Aligned_cols=101 Identities=12% Similarity=0.140 Sum_probs=65.6
Q ss_pred EEcCCCChhhh---cccccEEEEeC---Cc-hHHHHHHHhCCC----EEeecCCCChhhHHHHHHHcCCCCCCCCCCCCC
Q 013835 293 YLLDNIPHDWL---FLQCKAVVHHG---GA-GTTAAGLRAACP----TTIVPFFGDQPFWGERVHARGVGPPPIPVDEFS 361 (435)
Q Consensus 293 ~~~~~~p~~~~---l~~~~l~I~hg---G~-~s~~Eal~~G~P----~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~ 361 (435)
.+.+++++.++ ++.||++|.-+ |+ .++.||+++|+| +|+.-..+-- +....|+ .+++. +
T Consensus 344 ~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~-------~~~~~g~-lv~p~--d 413 (460)
T cd03788 344 YLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAA-------EELSGAL-LVNPY--D 413 (460)
T ss_pred EEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccch-------hhcCCCE-EECCC--C
Confidence 34568888887 89999999644 43 578999999999 5544332211 1123465 56654 6
Q ss_pred HHHHHHHHHHhc-C-HHHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 013835 362 LPKLINAINFML-D-PKVKERAVELAEAMEKEDGVTGAVKAFFK 403 (435)
Q Consensus 362 ~~~l~~~i~~ll-~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 403 (435)
.++++++|.+++ + ++.++...+..++.......+.-++.+.+
T Consensus 414 ~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~~~~~~~w~~~~l~ 457 (460)
T cd03788 414 IDEVADAIHRALTMPLEERRERHRKLREYVRTHDVQAWANSFLD 457 (460)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 899999999998 4 35555554444444455666666655544
No 140
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.93 E-value=0.15 Score=47.44 Aligned_cols=126 Identities=13% Similarity=0.030 Sum_probs=72.8
Q ss_pred CCcEEEeeCCC--CCCChHHHHHHHHHHHHHhCCeEEEEcCCCCC-C---CCCCCCCceEEcCCCChhhh---cccccEE
Q 013835 240 SKPIYIGFGSL--PVQEPEKMTQIIVEAFEQTGQRGIINKGWGGL-G---NLAEPKDSIYLLDNIPHDWL---FLQCKAV 310 (435)
Q Consensus 240 ~~~v~v~~Gs~--~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~-~---~~~~~~~~v~~~~~~p~~~~---l~~~~l~ 310 (435)
++.|.+..|+. .+.-+.+.+..+++.+.+.+.++++..|+..+ + .+.+...+..+.+-.+..++ +++|+++
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~~~~l~g~~sL~el~ali~~a~l~ 258 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALPGAVVLPKMSLAEVAALLAGADAV 258 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCCCCeecCCCCHHHHHHHHHcCCEE
Confidence 45555555543 23333445556777776657777766443321 1 11111122344555555554 8999999
Q ss_pred EEeCCchHHHHHHHhCCCEEee--cCCCCh----hhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013835 311 VHHGGAGTTAAGLRAACPTTIV--PFFGDQ----PFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 373 (435)
Q Consensus 311 I~hgG~~s~~Eal~~G~P~l~~--P~~~dQ----~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll 373 (435)
|+.=.. .++=|.+.|+|+|++ |....+ ..+...+. +. ..++++++++.++++++|
T Consensus 259 I~~DSg-p~HlAaa~g~P~i~lfg~t~p~~~~P~~~~~~~~~--~~-----~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 259 VGVDTG-LTHLAAALDKPTVTLYGATDPGRTGGYGKPNVALL--GE-----SGANPTPDEVLAALEELL 319 (319)
T ss_pred EeCCCh-HHHHHHHcCCCEEEEECCCCHhhcccCCCCceEEc--cC-----ccCCCCHHHHHHHHHhhC
Confidence 987554 899999999999987 322111 11111121 11 135678999999998875
No 141
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=96.80 E-value=0.0061 Score=44.94 Aligned_cols=80 Identities=13% Similarity=0.091 Sum_probs=55.4
Q ss_pred eCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHhhc-
Q 013835 313 HGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAEAMEK- 390 (435)
Q Consensus 313 hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~~~~~- 390 (435)
+|-..-+.|++++|+|+|.-.. ......+.+.--++ .. + +.+++.++|..++ |++.+++.++.+++...
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~~~~~~-~~--~--~~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~ 79 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFEDGEHII-TY--N--DPEELAEKIEYLLENPEERRRIAKNARERVLK 79 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCCCCeEE-EE--C--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 4445689999999999995543 33444433222332 22 2 7899999999999 99888887777766554
Q ss_pred cCcHHHHHHHH
Q 013835 391 EDGVTGAVKAF 401 (435)
Q Consensus 391 ~~~~~~~~~~i 401 (435)
....+..++.|
T Consensus 80 ~~t~~~~~~~i 90 (92)
T PF13524_consen 80 RHTWEHRAEQI 90 (92)
T ss_pred hCCHHHHHHHH
Confidence 66777666655
No 142
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.71 E-value=0.023 Score=45.42 Aligned_cols=88 Identities=20% Similarity=0.199 Sum_probs=56.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCcH-HHHHhcCceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHHHhhccCCCccCC
Q 013835 13 FVAIGKRLQDYGHRVRLATHSNFK-DFVLTAGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLLPACRDPDLDSG 91 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~~~-~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (435)
...+++.|.++||+|++++..... ......|+.++.++.. . ...+ ..+. .. .+ .+.+
T Consensus 13 ~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~-------~-k~~~----~~~~-~~-~l--------~k~i 70 (139)
T PF13477_consen 13 IYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSP-------R-KSPL----NYIK-YF-RL--------RKII 70 (139)
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCC-------C-CccH----HHHH-HH-HH--------HHHh
Confidence 568899999999999999976543 4445788998888521 0 0011 1111 11 11 2345
Q ss_pred cccCcCEEEeCCcc---hhHHHHHHHcC-CCEEEe
Q 013835 92 IAFKADAIIANPPA---YGHVHVAEALK-IPIHIF 122 (435)
Q Consensus 92 ~~~~pDlVi~d~~~---~~~~~~A~~~~-iP~v~~ 122 (435)
++.+||+|++.... ..+.+++...+ +|+|..
T Consensus 71 k~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~ 105 (139)
T PF13477_consen 71 KKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYT 105 (139)
T ss_pred ccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEE
Confidence 66799999876432 33456778888 898864
No 143
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.50 E-value=0.74 Score=43.10 Aligned_cols=93 Identities=12% Similarity=0.035 Sum_probs=59.5
Q ss_pred CCCcEEEeeCCC---CCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCC---CC-CCCCceE-EcCCCChhhh---cccc
Q 013835 239 GSKPIYIGFGSL---PVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGN---LA-EPKDSIY-LLDNIPHDWL---FLQC 307 (435)
Q Consensus 239 ~~~~v~v~~Gs~---~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~---~~-~~~~~v~-~~~~~p~~~~---l~~~ 307 (435)
+++.|.+..|+. .+.=+.+-+..+++.+.+.+.++++.+++.+.+. +. ..+.++. +.+-.+..++ +++|
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~a 252 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIALA 252 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHhC
Confidence 356777887763 2333344555677777666778887765544221 11 1223332 3454455554 8999
Q ss_pred cEEEEeCCchHHHHHHHhCCCEEee
Q 013835 308 KAVVHHGGAGTTAAGLRAACPTTIV 332 (435)
Q Consensus 308 ~l~I~hgG~~s~~Eal~~G~P~l~~ 332 (435)
|++|+.=.. .++=|.+.|+|+|++
T Consensus 253 ~l~I~~DSG-p~HlAaA~~~P~i~l 276 (334)
T TIGR02195 253 KAVVTNDSG-LMHVAAALNRPLVAL 276 (334)
T ss_pred CEEEeeCCH-HHHHHHHcCCCEEEE
Confidence 999987654 899999999999987
No 144
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.40 E-value=0.23 Score=46.81 Aligned_cols=93 Identities=13% Similarity=0.055 Sum_probs=59.4
Q ss_pred CCCcEEEeeCCC---CCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCC----CCC----c-eEEcCCCChhhh---
Q 013835 239 GSKPIYIGFGSL---PVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAE----PKD----S-IYLLDNIPHDWL--- 303 (435)
Q Consensus 239 ~~~~v~v~~Gs~---~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~----~~~----~-v~~~~~~p~~~~--- 303 (435)
+++.|.|..|+. .+.=+.+-+..+++.+...+.++++++++.+.+...+ .+. + +-+.+-.+..++
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~al 258 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVIL 258 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHH
Confidence 346777888773 2333344556677777666778887765544221111 111 1 334455555554
Q ss_pred cccccEEEEeCCchHHHHHHHhCCCEEee
Q 013835 304 FLQCKAVVHHGGAGTTAAGLRAACPTTIV 332 (435)
Q Consensus 304 l~~~~l~I~hgG~~s~~Eal~~G~P~l~~ 332 (435)
+++|++||+.=. |.++=|.+.|+|+|.+
T Consensus 259 i~~a~l~I~nDT-Gp~HlAaA~g~P~val 286 (348)
T PRK10916 259 IAACKAIVTNDS-GLMHVAAALNRPLVAL 286 (348)
T ss_pred HHhCCEEEecCC-hHHHHHHHhCCCEEEE
Confidence 899999998654 4899999999999987
No 145
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.28 E-value=0.0011 Score=49.07 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=49.1
Q ss_pred CchHHHHHHHc--CCCcEEEeeCCCCCC----ChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceE
Q 013835 228 PPESLVKWLEA--GSKPIYIGFGSLPVQ----EPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIY 293 (435)
Q Consensus 228 ~~~~l~~~~~~--~~~~v~v~~Gs~~~~----~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~ 293 (435)
.+..+..|+.. ++|.|.||+|+.... .....+..+++++...+..+++..+....+.+.++|+||+
T Consensus 26 G~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~~lg~lP~nVR 97 (97)
T PF06722_consen 26 GPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRAELGELPDNVR 97 (97)
T ss_dssp SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCGGCCS-TTTEE
T ss_pred CCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHHhhCCCCCCCC
Confidence 33445556654 456999999997542 1124778899999999999999998877778888999985
No 146
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.23 E-value=1.1 Score=42.26 Aligned_cols=92 Identities=10% Similarity=0.043 Sum_probs=60.0
Q ss_pred CCcEEEeeCCC--CCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCC-----CCCC---CCCceEEcCCCChhhh---ccc
Q 013835 240 SKPIYIGFGSL--PVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLG-----NLAE---PKDSIYLLDNIPHDWL---FLQ 306 (435)
Q Consensus 240 ~~~v~v~~Gs~--~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~-----~~~~---~~~~v~~~~~~p~~~~---l~~ 306 (435)
++.|.+..|+. .+.=+.+.+..+++.+.+.+.++++..|+.+.+ .+.+ .+..+-+.+..+..++ ++.
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~ 262 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDH 262 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHh
Confidence 46777887775 233334455667788877688888776654321 1111 1122334555555555 899
Q ss_pred ccEEEEeCCchHHHHHHHhCCCEEee
Q 013835 307 CKAVVHHGGAGTTAAGLRAACPTTIV 332 (435)
Q Consensus 307 ~~l~I~hgG~~s~~Eal~~G~P~l~~ 332 (435)
|++||+.=.. .++=|.+.|+|+|++
T Consensus 263 a~l~v~nDSG-p~HlAaA~g~P~v~l 287 (352)
T PRK10422 263 AQLFIGVDSA-PAHIAAAVNTPLICL 287 (352)
T ss_pred CCEEEecCCH-HHHHHHHcCCCEEEE
Confidence 9999987654 899999999999987
No 147
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.11 E-value=0.0089 Score=48.79 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHCCCeEEEEeCCCcHHH--HHhcCceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHHHhhccCCC
Q 013835 10 VQPFVAIGKRLQDYGHRVRLATHSNFKDF--VLTAGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLLPACRDPD 87 (435)
Q Consensus 10 ~~p~~~la~~L~~rGh~V~~~~~~~~~~~--~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (435)
-.-+..++++|.++||+|+++++...... ....|+.+..++..... ..+.. .... ..+..++
T Consensus 4 ~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~-~~~~~~l------- 67 (160)
T PF13579_consen 4 ERYVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRP-------WPLRL-LRFL-RRLRRLL------- 67 (160)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-SS-------SGGGH-CCHH-HHHHHHC-------
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccCCccc-------hhhhh-HHHH-HHHHHHH-------
Confidence 34578899999999999999986543221 33467887777632111 01110 0111 1112221
Q ss_pred ccCCcccCcCEEEeCCcc--hhHHHHHHHcCCCEEEee
Q 013835 88 LDSGIAFKADAIIANPPA--YGHVHVAEALKIPIHIFF 123 (435)
Q Consensus 88 ~~~~~~~~pDlVi~d~~~--~~~~~~A~~~~iP~v~~~ 123 (435)
..+..+||+|++.... +.+.++....++|+|...
T Consensus 68 --~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 68 --AARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp --HHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred --hhhccCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 0134599999986432 223344448899998864
No 148
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=96.04 E-value=0.11 Score=54.39 Aligned_cols=101 Identities=12% Similarity=0.125 Sum_probs=64.1
Q ss_pred CCCChhhh---cccccEEEEeC---Cc-hHHHHHHHhCCC---EEeec-CCCChhhHHHHHHHcC-CCCCCCCCCCCCHH
Q 013835 296 DNIPHDWL---FLQCKAVVHHG---GA-GTTAAGLRAACP---TTIVP-FFGDQPFWGERVHARG-VGPPPIPVDEFSLP 363 (435)
Q Consensus 296 ~~~p~~~~---l~~~~l~I~hg---G~-~s~~Eal~~G~P---~l~~P-~~~dQ~~na~~v~~~g-~G~~~l~~~~~~~~ 363 (435)
.+++..++ ++.||+|+.-+ |+ .+.+|++++|+| +++++ +.+ .+.. .| .|+ .+++. +.+
T Consensus 362 ~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G----~~~~---l~~~al-lVnP~--D~~ 431 (797)
T PLN03063 362 CSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG----AGQS---LGAGAL-LVNPW--NIT 431 (797)
T ss_pred CCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcC----chhh---hcCCeE-EECCC--CHH
Confidence 35666666 89999999765 66 567899999999 44444 333 1111 23 465 56654 789
Q ss_pred HHHHHHHHhc--CHHHHHHHHHHHHHhhccCcHHHHHHHHHHhcc
Q 013835 364 KLINAINFML--DPKVKERAVELAEAMEKEDGVTGAVKAFFKHYS 406 (435)
Q Consensus 364 ~l~~~i~~ll--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 406 (435)
+++++|.++| +++.|++..+...+......+..-++.+.+.+.
T Consensus 432 ~lA~AI~~aL~m~~~er~~r~~~~~~~v~~~~~~~Wa~~fl~~l~ 476 (797)
T PLN03063 432 EVSSAIKEALNMSDEERETRHRHNFQYVKTHSAQKWADDFMSELN 476 (797)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHH
Confidence 9999999988 555555444433344444556665555544443
No 149
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.03 E-value=0.086 Score=51.44 Aligned_cols=146 Identities=13% Similarity=0.098 Sum_probs=97.7
Q ss_pred CCcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCC---------CCCCCCceEEcCCCChhhh---cccc
Q 013835 240 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGN---------LAEPKDSIYLLDNIPHDWL---FLQC 307 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~---------~~~~~~~v~~~~~~p~~~~---l~~~ 307 (435)
+.+||.+|--+....|+ .++...+++...+..++|........+ +.-.|+++.+.+-...++- -.-+
T Consensus 758 d~vvf~~FNqLyKidP~-~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~La 836 (966)
T KOG4626|consen 758 DAVVFCNFNQLYKIDPS-TLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLA 836 (966)
T ss_pred CeEEEeechhhhcCCHH-HHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhhh
Confidence 34888888888777776 567778888888999998876543211 1225788988888777665 2334
Q ss_pred cEEEE---eCCchHHHHHHHhCCCEEeecCCCChhhH-HHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHH
Q 013835 308 KAVVH---HGGAGTTAAGLRAACPTTIVPFFGDQPFW-GERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAV 382 (435)
Q Consensus 308 ~l~I~---hgG~~s~~Eal~~G~P~l~~P~~~dQ~~n-a~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~ 382 (435)
|+.+- -.|..|-++.|+.|+|||.+|...---.. +-.+...|+|- .+ .+ +.++-.+.-.+|- |.++.++++
T Consensus 837 Dv~LDTplcnGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~h-li-ak--~~eEY~~iaV~Latd~~~L~~lr 912 (966)
T KOG4626|consen 837 DVCLDTPLCNGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGH-LI-AK--NREEYVQIAVRLATDKEYLKKLR 912 (966)
T ss_pred hhcccCcCcCCcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHH-HH-hh--hHHHHHHHHHHhhcCHHHHHHHH
Confidence 44432 23677999999999999999965432223 33556778884 33 33 5677777666666 877777666
Q ss_pred HHHHHhhc
Q 013835 383 ELAEAMEK 390 (435)
Q Consensus 383 ~~~~~~~~ 390 (435)
.--+..+.
T Consensus 913 ~~l~~~r~ 920 (966)
T KOG4626|consen 913 AKLRKARA 920 (966)
T ss_pred HHHHHHhc
Confidence 54444443
No 150
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.90 E-value=1.6 Score=41.10 Aligned_cols=92 Identities=11% Similarity=0.035 Sum_probs=58.9
Q ss_pred CCcEEEeeCCC--CCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCC-----CCCC-CC-Cc-eEEcCCCChhhh---ccc
Q 013835 240 SKPIYIGFGSL--PVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLG-----NLAE-PK-DS-IYLLDNIPHDWL---FLQ 306 (435)
Q Consensus 240 ~~~v~v~~Gs~--~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~-----~~~~-~~-~~-v~~~~~~p~~~~---l~~ 306 (435)
++.|.+..|+. .+.-+.+.+..+++.+...+.++++..++.+.+ .+.+ .+ .+ +-+.+-.+..++ ++.
T Consensus 181 ~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~ 260 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDH 260 (344)
T ss_pred CCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHh
Confidence 45677777764 223334455667777766678888776543211 1111 11 12 224555555554 899
Q ss_pred ccEEEEeCCchHHHHHHHhCCCEEee
Q 013835 307 CKAVVHHGGAGTTAAGLRAACPTTIV 332 (435)
Q Consensus 307 ~~l~I~hgG~~s~~Eal~~G~P~l~~ 332 (435)
|+++|+. -.|.++=|.+.|+|+|++
T Consensus 261 a~l~Vs~-DSGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 261 ARLFIGV-DSVPMHMAAALGTPLVAL 285 (344)
T ss_pred CCEEEec-CCHHHHHHHHcCCCEEEE
Confidence 9999998 566999999999999987
No 151
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.59 E-value=0.02 Score=50.66 Aligned_cols=105 Identities=13% Similarity=0.046 Sum_probs=70.5
Q ss_pred EcCCCChhhhcccccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHH--HHHHc-CCCCCCCCCCCCCHHHHHHHHH
Q 013835 294 LLDNIPHDWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGE--RVHAR-GVGPPPIPVDEFSLPKLINAIN 370 (435)
Q Consensus 294 ~~~~~p~~~~l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~--~v~~~-g~G~~~l~~~~~~~~~l~~~i~ 370 (435)
+.+|....+++.++|+.|...|. .+-+++-.|||+|.+|-.+-|+.-.. +=.++ |+.+ .+-.+ +++.++.+.
T Consensus 299 ~lsqqsfadiLH~adaalgmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sl-tlv~~---~aq~a~~~~ 373 (412)
T COG4370 299 WLSQQSFADILHAADAALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASL-TLVRP---EAQAAAQAV 373 (412)
T ss_pred EEeHHHHHHHHHHHHHHHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhccee-eecCC---chhhHHHHH
Confidence 34455666778888888777776 56678899999999999988876544 33333 8887 33322 344455554
Q ss_pred H-hc-CHHHHHHHHHHHHHhhc-cCcHHHHHHHHHH
Q 013835 371 F-ML-DPKVKERAVELAEAMEK-EDGVTGAVKAFFK 403 (435)
Q Consensus 371 ~-ll-~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~ 403 (435)
+ ++ |+.+.+++++...+-.. .+.+.++++.+-+
T Consensus 374 q~ll~dp~r~~air~nGqrRiGqaGaa~rIAe~l~e 409 (412)
T COG4370 374 QELLGDPQRLTAIRHNGQRRIGQAGAARRIAEELGE 409 (412)
T ss_pred HHHhcChHHHHHHHhcchhhccCcchHHHHHHHHHH
Confidence 4 88 99999999866555444 4445566666543
No 152
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.57 E-value=1.5 Score=38.49 Aligned_cols=36 Identities=8% Similarity=0.085 Sum_probs=30.7
Q ss_pred CCChhhhcccccEEEEeCC-chHHHHHHHhCCCEEee
Q 013835 297 NIPHDWLFLQCKAVVHHGG-AGTTAAGLRAACPTTIV 332 (435)
Q Consensus 297 ~~p~~~~l~~~~l~I~hgG-~~s~~Eal~~G~P~l~~ 332 (435)
+=|+-++|+.||.+|+-.. .|..+||++.|+|+-++
T Consensus 235 ~NPY~~~La~Adyii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 235 YNPYIDMLAAADYIISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCchHHHHhhcceEEEecchhhhhHHHhccCCCeEEE
Confidence 4478888999999887765 58899999999999876
No 153
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.52 E-value=1.2 Score=43.03 Aligned_cols=85 Identities=12% Similarity=0.145 Sum_probs=65.3
Q ss_pred hhcccccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-C-HHHHH
Q 013835 302 WLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-D-PKVKE 379 (435)
Q Consensus 302 ~~l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~-~~~~~ 379 (435)
.++.++|++|+.==+ ++.=|+..|+|.+.++. | ......++..|..-..++.++++.++|.+.+.+++ | +++++
T Consensus 323 ~iIs~~dl~ig~RlH-a~I~a~~~gvP~i~i~Y--~-~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r~~~~~ 398 (426)
T PRK10017 323 KILGACELTVGTRLH-SAIISMNFGTPAIAINY--E-HKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQLPALNA 398 (426)
T ss_pred HHHhhCCEEEEecch-HHHHHHHcCCCEEEeee--h-HHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhCHHHHHH
Confidence 349999999987777 67779999999999987 2 44555668888774136778888999999999999 6 56677
Q ss_pred HHHHHHHHhhc
Q 013835 380 RAVELAEAMEK 390 (435)
Q Consensus 380 ~~~~~~~~~~~ 390 (435)
..++..++.+.
T Consensus 399 ~l~~~v~~~r~ 409 (426)
T PRK10017 399 RLAEAVSRERQ 409 (426)
T ss_pred HHHHHHHHHHH
Confidence 76666666544
No 154
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=95.46 E-value=0.14 Score=53.45 Aligned_cols=106 Identities=13% Similarity=0.172 Sum_probs=69.5
Q ss_pred eEEcCCCChhhh---cccccEEEEeC---Cc-hHHHHHHHhCCC---EEeecC-CCChhhHHHHHHHcCCCCCCCCCCCC
Q 013835 292 IYLLDNIPHDWL---FLQCKAVVHHG---GA-GTTAAGLRAACP---TTIVPF-FGDQPFWGERVHARGVGPPPIPVDEF 360 (435)
Q Consensus 292 v~~~~~~p~~~~---l~~~~l~I~hg---G~-~s~~Eal~~G~P---~l~~P~-~~dQ~~na~~v~~~g~G~~~l~~~~~ 360 (435)
+.+.+++++.++ ++.||+++.-+ |+ .++.||+++|+| .+++.. .+. ..+..-|+ .+++.
T Consensus 344 ~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~-------~~~l~~~l-lv~P~-- 413 (726)
T PRK14501 344 HYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGA-------AAELAEAL-LVNPN-- 413 (726)
T ss_pred EEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccch-------hHHhCcCe-EECCC--
Confidence 356678898887 89999999765 43 678999999775 333332 221 11122366 66655
Q ss_pred CHHHHHHHHHHhc-C--HHHHHHHHHHHHHhhccCcHHHHHHHHHHhcccc
Q 013835 361 SLPKLINAINFML-D--PKVKERAVELAEAMEKEDGVTGAVKAFFKHYSRS 408 (435)
Q Consensus 361 ~~~~l~~~i~~ll-~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 408 (435)
+.++++++|.+++ + ++.+++.+++.+.. ....++..++.+.+.+...
T Consensus 414 d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v-~~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 414 DIEGIAAAIKRALEMPEEEQRERMQAMQERL-RRYDVHKWASDFLDELREA 463 (726)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHH
Confidence 6899999999988 4 34555565555554 4566777777766666544
No 155
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=95.39 E-value=0.08 Score=43.95 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=59.0
Q ss_pred cccCCccchhHHHHHHHHH-H-HCCCeEEEEeCCCcH--HHH---HhcC---ceeEEccccccCCCCCCCCCchhhHHHH
Q 013835 2 LIVGTRGDVQPFVAIGKRL-Q-DYGHRVRLATHSNFK--DFV---LTAG---LEFYPLDMVKNKGFLPSGPSEIPVQRNQ 71 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L-~-~rGh~V~~~~~~~~~--~~~---~~~g---~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 71 (435)
+..++.||..-|+.|++.+ . ...++..+++..+.. ..+ +... ..+..++-.... +..........
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v-----~q~~~~~~~~~ 77 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREV-----GQSYLTSIFTT 77 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEEe-----chhhHhhHHHH
Confidence 3568999999999999999 3 346777777754432 211 1111 134444411100 00111112222
Q ss_pred HHHHHHHHHhhccCCCccCCcccCcCEEEeCC--cchhHHHHHHHc------CCCEEEeec
Q 013835 72 MKEIIYSLLPACRDPDLDSGIAFKADAIIANP--PAYGHVHVAEAL------KIPIHIFFT 124 (435)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~pDlVi~d~--~~~~~~~~A~~~------~iP~v~~~~ 124 (435)
+..++..+ . .+.+.+||+||+.- .+.+..++|..+ |.++|.+-+
T Consensus 78 l~~~~~~~-~--------il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 78 LRAFLQSL-R--------ILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred HHHHHHHH-H--------HHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 22222221 1 12334899999872 334456788888 999998743
No 156
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=95.19 E-value=0.023 Score=54.65 Aligned_cols=89 Identities=16% Similarity=0.047 Sum_probs=61.9
Q ss_pred eCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHhhcc
Q 013835 313 HGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAEAMEKE 391 (435)
Q Consensus 313 hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~~~~~~ 391 (435)
|=|. ++.||+++|+|+++.- +..=++.++..-.|. .+++..-....+++++.++. |+.++.++.+-+.+-...
T Consensus 377 ~FGi-v~IEAMa~glPvvAt~----~GGP~EiV~~~~tG~-l~dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e 450 (495)
T KOG0853|consen 377 HFGI-VPIEAMACGLPVVATN----NGGPAEIVVHGVTGL-LIDPGQEAVAELADALLKLRRDPELWARMGKNGLKRVKE 450 (495)
T ss_pred Cccc-eeHHHHhcCCCEEEec----CCCceEEEEcCCcce-eeCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3355 8999999999999554 444566777777887 77764333347999999999 999999988776664332
Q ss_pred -CcHHHHHHHHHHhccc
Q 013835 392 -DGVTGAVKAFFKHYSR 407 (435)
Q Consensus 392 -~~~~~~~~~i~~~l~~ 407 (435)
-.++...+.|.+.+..
T Consensus 451 ~fs~~~~~~ri~~~~~~ 467 (495)
T KOG0853|consen 451 MFSWQHYSERIASVLGK 467 (495)
T ss_pred HHhHHHHHHHHHHHhHh
Confidence 3444455555555543
No 157
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=94.86 E-value=0.19 Score=41.53 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=23.7
Q ss_pred CCccchhHHHHHHHHHHHCCCeEEEEeCCC
Q 013835 5 GTRGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (435)
Q Consensus 5 ~~~GH~~p~~~la~~L~~rGh~V~~~~~~~ 34 (435)
...|--.-+..++++|+++||+|++++...
T Consensus 10 ~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAKRGHEVTVVSPGV 39 (177)
T ss_dssp SSSHHHHHHHHHHHHHHHTT-EEEEEESS-
T ss_pred CCChHHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 355666778999999999999999998654
No 158
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=94.84 E-value=0.18 Score=47.92 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=67.1
Q ss_pred CCCceEEcC-CCChhhhcccccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHH----HHHHcCCCCCCCCCCCCCH
Q 013835 288 PKDSIYLLD-NIPHDWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGE----RVHARGVGPPPIPVDEFSL 362 (435)
Q Consensus 288 ~~~~v~~~~-~~p~~~~l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~----~v~~~g~G~~~l~~~~~~~ 362 (435)
..+++...+ ..+..+++..+|++||--.. .+.|.+..++|+|.+..-.|.....+ -.++..-|. .+ -+.
T Consensus 250 ~~~~i~~~~~~~~~~~ll~~aDiLITDySS-i~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~-~~----~~~ 323 (369)
T PF04464_consen 250 DNSNIIFVSDNEDIYDLLAAADILITDYSS-IIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGP-IV----YNF 323 (369)
T ss_dssp -TTTEEE-TT-S-HHHHHHT-SEEEESS-T-HHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS--EE----SSH
T ss_pred cCCcEEECCCCCCHHHHHHhcCEEEEechh-HHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCc-ee----CCH
Confidence 457777755 45677889999999999976 99999999999998865554432110 011112221 11 267
Q ss_pred HHHHHHHHHhc-C-HHHHHHHHHHHHHhhc---cCcHHHHHHHHHH
Q 013835 363 PKLINAINFML-D-PKVKERAVELAEAMEK---EDGVTGAVKAFFK 403 (435)
Q Consensus 363 ~~l~~~i~~ll-~-~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~ 403 (435)
++|.++|..++ + ..++++..+..+++.. .+..+++++.|.+
T Consensus 324 ~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Dg~s~eri~~~I~k 369 (369)
T PF04464_consen 324 EELIEAIENIIENPDEYKEKREKFRDKFFKYNDGNSSERIVNYIFK 369 (369)
T ss_dssp HHHHHHHTTHHHHHHHTHHHHHHHHHHHSTT--S-HHHHHHHHHHH
T ss_pred HHHHHHHHhhhhCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhC
Confidence 99999999988 4 3455566666666644 3467788888764
No 159
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=94.18 E-value=0.25 Score=48.83 Aligned_cols=102 Identities=13% Similarity=0.030 Sum_probs=60.0
Q ss_pred hhhhcccccEEEEeC---C-chHHHHHHHhCCCEEeecCCC-ChhhHHHHHHHc-CCCCCCCC-CCC----CCHHHHHHH
Q 013835 300 HDWLFLQCKAVVHHG---G-AGTTAAGLRAACPTTIVPFFG-DQPFWGERVHAR-GVGPPPIP-VDE----FSLPKLINA 368 (435)
Q Consensus 300 ~~~~l~~~~l~I~hg---G-~~s~~Eal~~G~P~l~~P~~~-dQ~~na~~v~~~-g~G~~~l~-~~~----~~~~~l~~~ 368 (435)
..+++..||++|.-+ | ..++.||+++|+|+|.....+ ..... ..+... ..|+ .+. ... .+.++++++
T Consensus 468 y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi-~V~~r~~~~~~e~v~~La~~ 545 (590)
T cd03793 468 YEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGI-YIVDRRFKSPDESVQQLTQY 545 (590)
T ss_pred hHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceE-EEecCCccchHHHHHHHHHH
Confidence 455589999999855 3 258999999999999876542 21111 222222 2465 343 211 245788888
Q ss_pred HHHhcCHHHHHHHHHHHH--HhhccCcHHHHHHHHHH
Q 013835 369 INFMLDPKVKERAVELAE--AMEKEDGVTGAVKAFFK 403 (435)
Q Consensus 369 i~~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~ 403 (435)
+.++++.+.++++..... +..+.-.+++.+....+
T Consensus 546 m~~~~~~~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~ 582 (590)
T cd03793 546 MYEFCQLSRRQRIIQRNRTERLSDLLDWRNLGRYYRK 582 (590)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 888773344554444333 55555566666655443
No 160
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=93.80 E-value=0.4 Score=44.63 Aligned_cols=128 Identities=13% Similarity=0.109 Sum_probs=72.3
Q ss_pred CCcE-EEeeCCC-CCCChHHHHHHHHHHHHHhCCeEEEEcCCC-CCC---CCCCCCCceEEcCCCChhhh---cccccEE
Q 013835 240 SKPI-YIGFGSL-PVQEPEKMTQIIVEAFEQTGQRGIINKGWG-GLG---NLAEPKDSIYLLDNIPHDWL---FLQCKAV 310 (435)
Q Consensus 240 ~~~v-~v~~Gs~-~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~-~~~---~~~~~~~~v~~~~~~p~~~~---l~~~~l~ 310 (435)
++.| ++..||. .+.=+.+.+..+++.+.+.+.++++..|.. +.+ .+.+...++.+.+-.+..++ +++||++
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a~l~ 257 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGAKAV 257 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhCCEE
Confidence 3444 3444443 233344455667777766677777654432 211 11112223445555555554 8999999
Q ss_pred EEeCCchHHHHHHHhCCCEEee--cCCC----ChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013835 311 VHHGGAGTTAAGLRAACPTTIV--PFFG----DQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 373 (435)
Q Consensus 311 I~hgG~~s~~Eal~~G~P~l~~--P~~~----dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll 373 (435)
|+.-.. .++=|.+.|+|+|++ |... -...|...+..-+-. ..+++++++.++++++|
T Consensus 258 I~nDSG-p~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~~~~~c-----m~~I~~e~V~~~~~~~l 320 (322)
T PRK10964 258 VSVDTG-LSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACRSPGKS-----MADLSAETVFQKLETLI 320 (322)
T ss_pred EecCCc-HHHHHHHhCCCEEEEECCCCcccccCCCCCceeecCCCcc-----cccCCHHHHHHHHHHHh
Confidence 997765 899999999999997 3321 111122212111111 24668888888888765
No 161
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=93.76 E-value=0.36 Score=43.65 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=39.4
Q ss_pred CCceEEcCCCChhhhcccccEEEEeCCchHHHHHHHhCCCEEeecCC
Q 013835 289 KDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFF 335 (435)
Q Consensus 289 ~~~v~~~~~~p~~~~l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~ 335 (435)
...+.+.+-.+..+++++||.|||-.+. +-+||+.+|+|++++...
T Consensus 182 ~~~~~~~~~~~~~~Ll~~s~~VvtinSt-vGlEAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 182 PNVVIIDDDVNLYELLEQSDAVVTINST-VGLEALLHGKPVIVFGRA 227 (269)
T ss_pred CCeEEECCCCCHHHHHHhCCEEEEECCH-HHHHHHHcCCceEEecCc
Confidence 4455566678889999999999999998 999999999999998744
No 162
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=93.76 E-value=2 Score=35.58 Aligned_cols=96 Identities=15% Similarity=0.171 Sum_probs=48.6
Q ss_pred HCCCeEEEEeCCCcHHHHHhcCceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHHHhhccCCCccCCcccCcCEEEe
Q 013835 22 DYGHRVRLATHSNFKDFVLTAGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLLPACRDPDLDSGIAFKADAIIA 101 (435)
Q Consensus 22 ~rGh~V~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVi~ 101 (435)
.+||+|+++|........ .|+..+.+....... .............+.. ..........|++ +.+.||+|+.
T Consensus 1 q~gh~v~fl~~~~~~~~~--~GV~~~~y~~~~~~~--~~~~~~~~~~e~~~~r--g~av~~a~~~L~~--~Gf~PDvI~~ 72 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP--PGVRVVRYRPPRGPT--PGTHPYVRDFEAAVLR--GQAVARAARQLRA--QGFVPDVIIA 72 (171)
T ss_pred CCCCEEEEEecCCCCCCC--CCcEEEEeCCCCCCC--CCCCcccccHHHHHHH--HHHHHHHHHHHHH--cCCCCCEEEE
Confidence 379999999954332222 789888886311111 0000001111111110 1111111112222 2679999999
Q ss_pred CCcchhHHHHHHHc-CCCEEEeecc
Q 013835 102 NPPAYGHVHVAEAL-KIPIHIFFTM 125 (435)
Q Consensus 102 d~~~~~~~~~A~~~-~iP~v~~~~~ 125 (435)
.+---.++.+-..+ ++|.+...=.
T Consensus 73 H~GWGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 73 HPGWGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred cCCcchhhhHHHhCCCCcEEEEEEE
Confidence 85433356677788 8999886443
No 163
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=93.55 E-value=0.45 Score=46.08 Aligned_cols=126 Identities=12% Similarity=0.077 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHhC-CeEEEEcCCCCCC---CCCCCCCceEEcC-CCC--hhhhcccccEEE--EeCC--chHHHHHHH
Q 013835 256 EKMTQIIVEAFEQTG-QRGIINKGWGGLG---NLAEPKDSIYLLD-NIP--HDWLFLQCKAVV--HHGG--AGTTAAGLR 324 (435)
Q Consensus 256 ~~~~~~~~~~~~~~~-~~~iv~~~~~~~~---~~~~~~~~v~~~~-~~p--~~~~l~~~~l~I--~hgG--~~s~~Eal~ 324 (435)
...++.+....+..+ ..+-+..+..... .+.+. +|+++.+ +.+ ..+++..||+++ +||. .+++.||+.
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~Iga~te~s~kL~~L~~y-~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~ 369 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHIAALTEMSSKLMSLDKY-DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFE 369 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEecCcccHHHHHHHhc-CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHH
Confidence 344555555555553 4555422211012 22234 6666666 455 244589999776 5654 489999999
Q ss_pred hCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHhhcc
Q 013835 325 AACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-DPKVKERAVELAEAMEKE 391 (435)
Q Consensus 325 ~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~~~~~~ 391 (435)
+|+|++.+-.... +...+.. |- .++.. +.+++.++|.++| |++..+.+-..+++.+..
T Consensus 370 ~G~pI~afd~t~~---~~~~i~~---g~-l~~~~--~~~~m~~~i~~lL~d~~~~~~~~~~q~~~a~~ 428 (438)
T TIGR02919 370 YNLLILGFEETAH---NRDFIAS---EN-IFEHN--EVDQLISKLKDLLNDPNQFRELLEQQREHAND 428 (438)
T ss_pred cCCcEEEEecccC---CcccccC---Cc-eecCC--CHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc
Confidence 9999997653321 1122322 53 44443 6899999999999 886666555555555443
No 164
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=93.55 E-value=3.5 Score=40.54 Aligned_cols=91 Identities=13% Similarity=0.090 Sum_probs=65.0
Q ss_pred eEEcCCCChhhh---cccccEEEEeC---CchH-HHHHHHhCC----CEEeecCCCChhhHHHHHHHcCCCCCCCCCCCC
Q 013835 292 IYLLDNIPHDWL---FLQCKAVVHHG---GAGT-TAAGLRAAC----PTTIVPFFGDQPFWGERVHARGVGPPPIPVDEF 360 (435)
Q Consensus 292 v~~~~~~p~~~~---l~~~~l~I~hg---G~~s-~~Eal~~G~----P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~ 360 (435)
+.+.+.+|.+++ +..||+++.-. |+|. ..|.++++. |+|+--+.+- .+.+.-|+ .+++-
T Consensus 364 ~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGa-------a~~l~~Al-lVNP~-- 433 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGA-------AVELKGAL-LTNPY-- 433 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEeccccc-------hhhcCCCE-EECCC--
Confidence 577788999887 89999998655 8875 459999988 6665444331 13444465 66654
Q ss_pred CHHHHHHHHHHhc-C--HHHHHHHHHHHHHhhccC
Q 013835 361 SLPKLINAINFML-D--PKVKERAVELAEAMEKED 392 (435)
Q Consensus 361 ~~~~l~~~i~~ll-~--~~~~~~~~~~~~~~~~~~ 392 (435)
+.++++++|.+.| . .+-+++.+++.+.+...+
T Consensus 434 d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~d 468 (487)
T TIGR02398 434 DPVRMDETIYVALAMPKAEQQARMREMFDAVNYYD 468 (487)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCC
Confidence 7899999999998 3 456677777777766654
No 165
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=92.36 E-value=0.18 Score=42.92 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCCc
Q 013835 12 PFVAIGKRLQDYGHRVRLATHSNF 35 (435)
Q Consensus 12 p~~~la~~L~~rGh~V~~~~~~~~ 35 (435)
-..+|+++|.+.||+|+++++..-
T Consensus 15 Gi~aL~~~L~~~g~~V~VvAP~~~ 38 (196)
T PF01975_consen 15 GIRALAKALSALGHDVVVVAPDSE 38 (196)
T ss_dssp HHHHHHHHHTTTSSEEEEEEESSS
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCC
Confidence 467899999888899999997653
No 166
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=91.36 E-value=13 Score=34.88 Aligned_cols=92 Identities=16% Similarity=0.138 Sum_probs=61.3
Q ss_pred CCcEEEeeC-CC--CCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCC---CC-CCCCceEEcCCCChhhh---cccccE
Q 013835 240 SKPIYIGFG-SL--PVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGN---LA-EPKDSIYLLDNIPHDWL---FLQCKA 309 (435)
Q Consensus 240 ~~~v~v~~G-s~--~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~---~~-~~~~~v~~~~~~p~~~~---l~~~~l 309 (435)
++.|.++-| +. ...-+.+-+..+++.+.+.+.++++..++.+.+. +. ..+..+.+.+-.+..++ ++.||+
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l 254 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGADL 254 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCCE
Confidence 578888888 43 2333445667788999888877776655422211 11 13333336666666665 799999
Q ss_pred EEEeCCchHHHHHHHhCCCEEee
Q 013835 310 VVHHGGAGTTAAGLRAACPTTIV 332 (435)
Q Consensus 310 ~I~hgG~~s~~Eal~~G~P~l~~ 332 (435)
||+.=. |-++=|.+.|+|.|++
T Consensus 255 ~I~~DS-g~~HlAaA~~~P~I~i 276 (334)
T COG0859 255 VIGNDS-GPMHLAAALGTPTIAL 276 (334)
T ss_pred EEccCC-hHHHHHHHcCCCEEEE
Confidence 887654 4899999999999997
No 167
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=91.16 E-value=2.6 Score=37.45 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=20.5
Q ss_pred cchhHHHHHHHHHHHCCCeEEEEeCCC
Q 013835 8 GDVQPFVAIGKRLQDYGHRVRLATHSN 34 (435)
Q Consensus 8 GH~~p~~~la~~L~~rGh~V~~~~~~~ 34 (435)
|=-.-+-.|+++|+++||+|+++++..
T Consensus 17 GLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 17 GLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred cHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 333457789999999999999999865
No 168
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=91.02 E-value=2.4 Score=41.61 Aligned_cols=157 Identities=13% Similarity=0.144 Sum_probs=94.8
Q ss_pred CcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCC--------CCCCCceEEcCCCChhhh---cccccE
Q 013835 241 KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNL--------AEPKDSIYLLDNIPHDWL---FLQCKA 309 (435)
Q Consensus 241 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~--------~~~~~~v~~~~~~p~~~~---l~~~~l 309 (435)
.+++..-|++..+..-.++..++.-+-+.+.++++.+.+ + ..+ ...+.++.+.-+.+.... ++.+|.
T Consensus 294 ~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~g-d-~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~ 371 (487)
T COG0297 294 GPLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTG-D-PELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADV 371 (487)
T ss_pred CcEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecC-c-HHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCCE
Confidence 477777777765554444443444444446677766543 2 111 125677888887765443 899999
Q ss_pred EEE-----eCCchHHHHHHHhCCCEEeecCCC------ChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc----C
Q 013835 310 VVH-----HGGAGTTAAGLRAACPTTIVPFFG------DQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML----D 374 (435)
Q Consensus 310 ~I~-----hgG~~s~~Eal~~G~P~l~~P~~~------dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll----~ 374 (435)
++- .||. |=++|+.+|++-|+.+..+ |-..+. ....|.|+ ...+. +++++..++++.+ +
T Consensus 372 ~lmPSrfEPcGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~~~gtGf-~f~~~--~~~~l~~al~rA~~~y~~ 445 (487)
T COG0297 372 ILMPSRFEPCGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQGVGTGF-LFLQT--NPDHLANALRRALVLYRA 445 (487)
T ss_pred EEeCCcCcCCcH-HHHHHHHcCCcceEcccCCccceecCccchh--ccCceeEE-EEecC--CHHHHHHHHHHHHHHhhC
Confidence 985 4677 7889999999888888764 322222 45567775 45443 8999999997755 2
Q ss_pred HHHHHHHHHHHHHhhccC-cHHHHHHHHHHhccc
Q 013835 375 PKVKERAVELAEAMEKED-GVTGAVKAFFKHYSR 407 (435)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~ 407 (435)
++. ..+.++...+..+ +++..+....+..+.
T Consensus 446 ~~~--~w~~~~~~~m~~d~sw~~sa~~y~~lY~~ 477 (487)
T COG0297 446 PPL--LWRKVQPNAMGADFSWDLSAKEYVELYKP 477 (487)
T ss_pred CHH--HHHHHHHhhcccccCchhHHHHHHHHHHH
Confidence 332 1233333333333 566666665555543
No 169
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=89.39 E-value=0.75 Score=42.22 Aligned_cols=79 Identities=13% Similarity=0.177 Sum_probs=63.1
Q ss_pred CceEE-cCCCChhhh---cccccEEEEeC----CchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCC
Q 013835 290 DSIYL-LDNIPHDWL---FLQCKAVVHHG----GAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFS 361 (435)
Q Consensus 290 ~~v~~-~~~~p~~~~---l~~~~l~I~hg----G~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~ 361 (435)
+++.+ .+++|.++. +++||+.|..- |.|+++-+|+.|+|+.+ ..+-.--..+.+.|+-+ ....++++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L----~~~np~~~~l~~~~ipV-lf~~d~L~ 319 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFL----SRDNPFWQDLKEQGIPV-LFYGDELD 319 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEE----ecCChHHHHHHhCCCeE-EeccccCC
Confidence 57765 569998887 89999998766 88999999999999995 44545566778888876 55567889
Q ss_pred HHHHHHHHHHhc
Q 013835 362 LPKLINAINFML 373 (435)
Q Consensus 362 ~~~l~~~i~~ll 373 (435)
.+.+.++=++|.
T Consensus 320 ~~~v~ea~rql~ 331 (360)
T PF07429_consen 320 EALVREAQRQLA 331 (360)
T ss_pred HHHHHHHHHHHh
Confidence 888888888776
No 170
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=88.33 E-value=0.39 Score=42.66 Aligned_cols=93 Identities=16% Similarity=0.119 Sum_probs=54.3
Q ss_pred CCCcEEEeeCCCC--CCChHHHHHHHHHHHHHhCCeEEEEcCCCCC-CC----CCC-CC-CceEEcCCCChhhh---ccc
Q 013835 239 GSKPIYIGFGSLP--VQEPEKMTQIIVEAFEQTGQRGIINKGWGGL-GN----LAE-PK-DSIYLLDNIPHDWL---FLQ 306 (435)
Q Consensus 239 ~~~~v~v~~Gs~~--~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~-~~----~~~-~~-~~v~~~~~~p~~~~---l~~ 306 (435)
+++.|.+..|+.. ..-+.+.+..+++.+.+.+.++++..++.+. .. +.+ .+ ..+.+.+-.+..++ +..
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~ 183 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISR 183 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHT
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhc
Confidence 4566777776652 3334455667888887777677666544431 11 111 11 24666666666655 899
Q ss_pred ccEEEEeCCchHHHHHHHhCCCEEee
Q 013835 307 CKAVVHHGGAGTTAAGLRAACPTTIV 332 (435)
Q Consensus 307 ~~l~I~hgG~~s~~Eal~~G~P~l~~ 332 (435)
+|++|+.-+. .++=|.+.|+|+|++
T Consensus 184 a~~~I~~Dtg-~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 184 ADLVIGNDTG-PMHLAAALGTPTVAL 208 (247)
T ss_dssp SSEEEEESSH-HHHHHHHTT--EEEE
T ss_pred CCEEEecCCh-HHHHHHHHhCCEEEE
Confidence 9999998765 899999999999998
No 171
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=87.54 E-value=3.9 Score=37.14 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=55.3
Q ss_pred CceEEcC-CCChhhh---cccccEEEEeC----CchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCC
Q 013835 290 DSIYLLD-NIPHDWL---FLQCKAVVHHG----GAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFS 361 (435)
Q Consensus 290 ~~v~~~~-~~p~~~~---l~~~~l~I~hg----G~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~ 361 (435)
+++.+.. ++|.++. +++||+.|... |.|+++-.++.|+|+++-.. -.--..+.+.|+-+ ..+.++++
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~----n~fwqdl~e~gv~V-lf~~d~L~ 280 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRD----NPFWQDLTEQGLPV-LFTGDDLD 280 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecC----CchHHHHHhCCCeE-EecCCccc
Confidence 6776554 7888776 89999888665 88999999999999996532 22223466677775 45677777
Q ss_pred HHHHHHHHHHh
Q 013835 362 LPKLINAINFM 372 (435)
Q Consensus 362 ~~~l~~~i~~l 372 (435)
...+.++=+++
T Consensus 281 ~~~v~e~~rql 291 (322)
T PRK02797 281 EDIVREAQRQL 291 (322)
T ss_pred HHHHHHHHHHH
Confidence 77666654443
No 172
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=86.13 E-value=6.7 Score=34.24 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=23.9
Q ss_pred cCEEEe-CCcc-hhHHHHHHHcCCCEEEeeccCC
Q 013835 96 ADAIIA-NPPA-YGHVHVAEALKIPIHIFFTMPW 127 (435)
Q Consensus 96 pDlVi~-d~~~-~~~~~~A~~~~iP~v~~~~~~~ 127 (435)
||++++ |+.. --+..=|.++|||+|.+.-+..
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 999965 6543 3457789999999999875443
No 173
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=86.00 E-value=3.8 Score=36.22 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCCc
Q 013835 11 QPFVAIGKRLQDYGHRVRLATHSNF 35 (435)
Q Consensus 11 ~p~~~la~~L~~rGh~V~~~~~~~~ 35 (435)
--..+|+++|++.| +|+++++..-
T Consensus 14 ~Gi~aL~~~l~~~g-~V~VvAP~~~ 37 (244)
T TIGR00087 14 PGIRALYQALKELG-EVTVVAPARQ 37 (244)
T ss_pred HhHHHHHHHHHhCC-CEEEEeCCCC
Confidence 34678899999888 8999987653
No 174
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=85.28 E-value=22 Score=30.09 Aligned_cols=99 Identities=18% Similarity=0.109 Sum_probs=62.2
Q ss_pred cEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCCchHHHH
Q 013835 242 PIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAA 321 (435)
Q Consensus 242 ~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~l~I~hgG~~s~~E 321 (435)
+-+--+||.....|+..-....+.++..+-.|++..+++... |+ -.-.-|
T Consensus 32 i~vrVvgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNpaa-----PG-------------------------P~kARE 81 (277)
T COG1927 32 IEVRVVGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNPAA-----PG-------------------------PKKARE 81 (277)
T ss_pred ceEEEeccccccChHHHHHHHHHHHHhcCCCEEEEeCCCCCC-----CC-------------------------chHHHH
Confidence 445556777677777655556677777777888887765422 11 112344
Q ss_pred HHH-hCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHH
Q 013835 322 GLR-AACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPK 376 (435)
Q Consensus 322 al~-~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll~~~ 376 (435)
.+. +|+|.+++.... -...-.-+++.|+|. .+-. .+-+.-+=++.|||.
T Consensus 82 ~l~~s~~PaiiigDaP-g~~vkdeleeqGlGY-Iivk----~DpmiGArREFLDPv 131 (277)
T COG1927 82 ILSDSDVPAIIIGDAP-GLKVKDELEEQGLGY-IIVK----ADPMIGARREFLDPV 131 (277)
T ss_pred HHhhcCCCEEEecCCc-cchhHHHHHhcCCeE-EEec----CCcccchhhhhcCHH
Confidence 444 579999998665 445556889999995 5432 344445556666653
No 175
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=84.43 E-value=6.6 Score=41.85 Aligned_cols=101 Identities=9% Similarity=0.026 Sum_probs=61.2
Q ss_pred CCCChhhh---cccccEEEEeC---CchH-HHHHHHhCC---CEEeecCCCChhhHHHHHHHcC-CCCCCCCCCCCCHHH
Q 013835 296 DNIPHDWL---FLQCKAVVHHG---GAGT-TAAGLRAAC---PTTIVPFFGDQPFWGERVHARG-VGPPPIPVDEFSLPK 364 (435)
Q Consensus 296 ~~~p~~~~---l~~~~l~I~hg---G~~s-~~Eal~~G~---P~l~~P~~~dQ~~na~~v~~~g-~G~~~l~~~~~~~~~ 364 (435)
..+|..++ +..||+++.-+ |+|. ..|+++++. .+++++.+. ..+. .+| -|+ .+++- +.++
T Consensus 446 ~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfa---Gaa~---~L~~~Al-lVNP~--D~~~ 516 (934)
T PLN03064 446 RSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFA---GAAQ---SLGAGAI-LVNPW--NITE 516 (934)
T ss_pred cCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeCCC---chHH---HhCCceE-EECCC--CHHH
Confidence 34777776 89999999765 7765 569999965 233334332 1222 223 354 56554 7899
Q ss_pred HHHHHHHhc--CHHHHHHHHHHHHHhhccCcHHHHHHHHHHhc
Q 013835 365 LINAINFML--DPKVKERAVELAEAMEKEDGVTGAVKAFFKHY 405 (435)
Q Consensus 365 l~~~i~~ll--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 405 (435)
++++|.+.| +++.|++..+...+......+..-++.+.+.+
T Consensus 517 vA~AI~~AL~M~~~Er~~r~~~~~~~V~~~d~~~Wa~~fl~~L 559 (934)
T PLN03064 517 VAASIAQALNMPEEEREKRHRHNFMHVTTHTAQEWAETFVSEL 559 (934)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence 999999977 56555555444444444455555455444434
No 176
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=84.05 E-value=3.2 Score=36.55 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=20.7
Q ss_pred chhHHHHHHHHHHHCCCeEEEEeCCCc
Q 013835 9 DVQPFVAIGKRLQDYGHRVRLATHSNF 35 (435)
Q Consensus 9 H~~p~~~la~~L~~rGh~V~~~~~~~~ 35 (435)
|.--..+|+++|+ .+++|+++++..-
T Consensus 12 ~a~Gi~aL~~al~-~~~dV~VVAP~~~ 37 (252)
T COG0496 12 HAPGIRALARALR-EGADVTVVAPDRE 37 (252)
T ss_pred CCHHHHHHHHHHh-hCCCEEEEccCCC
Confidence 4444678899998 9999999998754
No 177
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=83.84 E-value=10 Score=34.65 Aligned_cols=99 Identities=13% Similarity=0.122 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCCchHHHHHHHh----CCCEE
Q 013835 255 PEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLRA----ACPTT 330 (435)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~l~I~hgG~~s~~Eal~~----G~P~l 330 (435)
..+.++.+.+.+++.+..+.+...... .... .+ .+..+..++-..+|++|+-||-||+++|+.. ++|++
T Consensus 19 ~~e~~~~i~~~L~~~g~~v~v~~~~~~--~~~~--~~---~~~~~~~~~~~~~d~vi~~GGDGt~l~~~~~~~~~~~pil 91 (291)
T PRK02155 19 IAEPLESLAAFLAKRGFEVVFEADTAR--NIGL--TG---YPALTPEEIGARADLAVVLGGDGTMLGIGRQLAPYGVPLI 91 (291)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecchhh--hcCc--cc---ccccChhHhccCCCEEEEECCcHHHHHHHHHhcCCCCCEE
Confidence 344567777777777877776431111 0100 00 0011223334578999999999999999774 67988
Q ss_pred eecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 013835 331 IVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPKV 377 (435)
Q Consensus 331 ~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll~~~~ 377 (435)
.+.. ..+|. .. +.+.+++.+.|.++++.+|
T Consensus 92 GIn~-------------G~lGF-L~---~~~~~~~~~~l~~~~~g~~ 121 (291)
T PRK02155 92 GINH-------------GRLGF-IT---DIPLDDMQETLPPMLAGNY 121 (291)
T ss_pred EEcC-------------CCccc-cc---cCCHHHHHHHHHHHHcCCc
Confidence 7662 12454 22 4467999999999884333
No 178
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.44 E-value=8.8 Score=35.25 Aligned_cols=54 Identities=26% Similarity=0.244 Sum_probs=41.8
Q ss_pred cccccEEEEeCCchHHHHHHHh----CCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC
Q 013835 304 FLQCKAVVHHGGAGTTAAGLRA----ACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD 374 (435)
Q Consensus 304 l~~~~l~I~hgG~~s~~Eal~~----G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll~ 374 (435)
.+.+|++|+=||-||++.|... ++|++.+... .+|. . .+..++++.+++.++++
T Consensus 70 ~~~~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~G-------------~lGF-L---~~~~~~~~~~~l~~i~~ 127 (306)
T PRK03372 70 ADGCELVLVLGGDGTILRAAELARAADVPVLGVNLG-------------HVGF-L---AEAEAEDLDEAVERVVD 127 (306)
T ss_pred ccCCCEEEEEcCCHHHHHHHHHhccCCCcEEEEecC-------------CCce-e---ccCCHHHHHHHHHHHHc
Confidence 4578999999999999999764 8899988752 2554 2 23467999999999883
No 179
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=80.89 E-value=14 Score=28.46 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=38.3
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCC----CcHHHHHhcCceeEEcc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHS----NFKDFVLTAGLEFYPLD 50 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~----~~~~~~~~~g~~~~~i~ 50 (435)
.+.|+-.|.....-++..|.+.|++|.++... ++.+.+.+.+..++.+.
T Consensus 5 ~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS 57 (119)
T cd02067 5 ATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLS 57 (119)
T ss_pred EeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 56788999999999999999999999888532 33455566777777775
No 180
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=80.71 E-value=6.2 Score=35.11 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCC
Q 013835 11 QPFVAIGKRLQDYGHRVRLATHSN 34 (435)
Q Consensus 11 ~p~~~la~~L~~rGh~V~~~~~~~ 34 (435)
--..+|+++|.+.| +|+++++..
T Consensus 19 ~Gi~aL~~~l~~~g-~V~VvAP~~ 41 (257)
T PRK13932 19 EGIHVLAASMKKIG-RVTVVAPAE 41 (257)
T ss_pred HHHHHHHHHHHhCC-CEEEEcCCC
Confidence 34678899998888 799998764
No 181
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=80.39 E-value=12 Score=28.25 Aligned_cols=83 Identities=23% Similarity=0.362 Sum_probs=52.3
Q ss_pred chhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHhcCceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHHHhhccCCCc
Q 013835 9 DVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLLPACRDPDL 88 (435)
Q Consensus 9 H~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (435)
+-.-+.++++.|.+.|+++. .+.+ -.+.+++.|+.+..+.... . + ...+...+
T Consensus 11 ~k~~~~~~~~~l~~~G~~l~-aT~g-T~~~l~~~gi~~~~v~~~~------~---~----~~~i~~~i------------ 63 (110)
T cd01424 11 DKPEAVEIAKRLAELGFKLV-ATEG-TAKYLQEAGIPVEVVNKVS------E---G----RPNIVDLI------------ 63 (110)
T ss_pred cHhHHHHHHHHHHHCCCEEE-EchH-HHHHHHHcCCeEEEEeecC------C---C----chhHHHHH------------
Confidence 34457899999999999883 5544 4567788999877764111 0 0 01122221
Q ss_pred cCCcccCcCEEEeCCc-------chhHHHHHHHcCCCEEE
Q 013835 89 DSGIAFKADAIIANPP-------AYGHVHVAEALKIPIHI 121 (435)
Q Consensus 89 ~~~~~~~pDlVi~d~~-------~~~~~~~A~~~~iP~v~ 121 (435)
++-++|+||..+- .+.-.-.|-.+|||+++
T Consensus 64 ---~~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 64 ---KNGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred ---HcCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 2238899987431 23445679999999986
No 182
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=80.19 E-value=8 Score=28.05 Aligned_cols=33 Identities=33% Similarity=0.557 Sum_probs=25.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCcHHHHHhcCceeE
Q 013835 13 FVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFY 47 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~~~~~~~~~g~~~~ 47 (435)
+.++++.|.+.|+++ ++|.+. .+.+++.|+++-
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~gT-a~~L~~~Gi~~~ 34 (90)
T smart00851 2 LVELAKRLAELGFEL-VATGGT-AKFLREAGLPVK 34 (90)
T ss_pred HHHHHHHHHHCCCEE-EEccHH-HHHHHHCCCcce
Confidence 468899999999998 466553 577888898763
No 183
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=79.38 E-value=11 Score=33.58 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCCc
Q 013835 11 QPFVAIGKRLQDYGHRVRLATHSNF 35 (435)
Q Consensus 11 ~p~~~la~~L~~rGh~V~~~~~~~~ 35 (435)
--..+|+++|++ +|+|+++++..-
T Consensus 14 ~Gi~aL~~~l~~-~~~V~VvAP~~~ 37 (253)
T PRK13935 14 PGIIILAEYLSE-KHEVFVVAPDKE 37 (253)
T ss_pred HHHHHHHHHHHh-CCcEEEEccCCC
Confidence 346788888865 689999987653
No 184
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.38 E-value=17 Score=33.49 Aligned_cols=54 Identities=26% Similarity=0.272 Sum_probs=41.6
Q ss_pred cccccEEEEeCCchHHHHHHHh----CCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC
Q 013835 304 FLQCKAVVHHGGAGTTAAGLRA----ACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD 374 (435)
Q Consensus 304 l~~~~l~I~hgG~~s~~Eal~~----G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll~ 374 (435)
...+|++|+=||=||++.|... ++|++.+-. ..+|. + .+.+.+++.+++.++++
T Consensus 66 ~~~~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~-------------G~lGF--L--t~~~~~~~~~~l~~l~~ 123 (305)
T PRK02649 66 DSSMKFAIVLGGDGTVLSAARQLAPCGIPLLTINT-------------GHLGF--L--TEAYLNQLDEAIDQVLA 123 (305)
T ss_pred ccCcCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeC-------------CCCcc--c--ccCCHHHHHHHHHHHHc
Confidence 4579999999999999999775 789998753 23553 2 23467899999999883
No 185
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.54 E-value=23 Score=32.41 Aligned_cols=96 Identities=18% Similarity=0.186 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCCchHHHHHHHh----CCCEE
Q 013835 255 PEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLRA----ACPTT 330 (435)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~l~I~hgG~~s~~Eal~~----G~P~l 330 (435)
..+..+.+.+.+++.+..+.+..... ..+ +.+- ....+...+-..+|++|+-||-||+++++.. ++|++
T Consensus 18 a~e~~~~i~~~L~~~giev~v~~~~~--~~~---~~~~--~~~~~~~~~~~~~d~vi~~GGDGt~l~~~~~~~~~~~Pvl 90 (295)
T PRK01231 18 VVETLRRLKDFLLDRGLEVILDEETA--EVL---PGHG--LQTVSRKLLGEVCDLVIVVGGDGSLLGAARALARHNVPVL 90 (295)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecchh--hhc---Cccc--ccccchhhcccCCCEEEEEeCcHHHHHHHHHhcCCCCCEE
Confidence 44556667777777777766543111 111 1110 0112222233468999999999999999753 67999
Q ss_pred eecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC
Q 013835 331 IVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD 374 (435)
Q Consensus 331 ~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll~ 374 (435)
.+... .+|. + .+.+.+++.++|.++++
T Consensus 91 gin~G-------------~lGF--l--~~~~~~~~~~~l~~~~~ 117 (295)
T PRK01231 91 GINRG-------------RLGF--L--TDIRPDELEFKLAEVLD 117 (295)
T ss_pred EEeCC-------------cccc--c--ccCCHHHHHHHHHHHHc
Confidence 87752 3554 2 34568999999999883
No 186
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=78.46 E-value=11 Score=33.62 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=48.2
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCc-HHHHHhcCceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHHHhhccCCCccCC
Q 013835 13 FVAIGKRLQDYGHRVRLATHSNF-KDFVLTAGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLLPACRDPDLDSG 91 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~~-~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (435)
-..|+++|.++||+|+..+.... .+.+...|..-+..+ .+. ...+..++.
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g-------------~l~--~~~l~~~l~-------------- 62 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTG-------------ALD--PQELREFLK-------------- 62 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEEC-------------CCC--HHHHHHHHH--------------
Confidence 67899999999999998875543 333443332222222 111 112333322
Q ss_pred cccCcCEEEeCCcchh------HHHHHHHcCCCEEEeec
Q 013835 92 IAFKADAIIANPPAYG------HVHVAEALKIPIHIFFT 124 (435)
Q Consensus 92 ~~~~pDlVi~d~~~~~------~~~~A~~~~iP~v~~~~ 124 (435)
+.++|+||--.+.++ +..+++.+|||++-+-.
T Consensus 63 -~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR 100 (256)
T TIGR00715 63 -RHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFER 100 (256)
T ss_pred -hcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEEC
Confidence 238998885333232 46788999999998753
No 187
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.75 E-value=19 Score=32.88 Aligned_cols=98 Identities=15% Similarity=0.117 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhCCeEEEEcCCCCCC-CCC-CCCCceEEcCCCChhhhcccccEEEEeCCchHHHHHHH----hCCCE
Q 013835 256 EKMTQIIVEAFEQTGQRGIINKGWGGLG-NLA-EPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLR----AACPT 329 (435)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~iv~~~~~~~~-~~~-~~~~~v~~~~~~p~~~~l~~~~l~I~hgG~~s~~Eal~----~G~P~ 329 (435)
.+..+.+.+-+.+.+..+++-......+ ... +.+ +. ...+..++...+|++|+=||=||++.|.. .++|+
T Consensus 20 ~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~D~vi~lGGDGT~L~aa~~~~~~~~Pi 95 (296)
T PRK04539 20 QDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTV-GC---HIVNKTELGQYCDLVAVLGGDGTFLSVAREIAPRAVPI 95 (296)
T ss_pred HHHHHHHHHHHHHCCCEEEEecccccccchhccccc-cc---cccchhhcCcCCCEEEEECCcHHHHHHHHHhcccCCCE
Confidence 4455666666667777777532100000 000 001 11 11222333457999999999999999975 37899
Q ss_pred EeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC
Q 013835 330 TIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD 374 (435)
Q Consensus 330 l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll~ 374 (435)
+.+-.. .+|. .. +.+.+++.+++.++++
T Consensus 96 lGIN~G-------------~lGF-L~---~~~~~~~~~~l~~i~~ 123 (296)
T PRK04539 96 IGINQG-------------HLGF-LT---QIPREYMTDKLLPVLE 123 (296)
T ss_pred EEEecC-------------CCeE-ee---ccCHHHHHHHHHHHHc
Confidence 987642 2564 22 3567999999999883
No 188
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=77.60 E-value=15 Score=32.63 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=17.5
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCc
Q 013835 13 FVAIGKRLQDYGHRVRLATHSNF 35 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~~ 35 (435)
..+|+++|++ +|+|+++++..-
T Consensus 16 l~aL~~~l~~-~~~V~VvAP~~~ 37 (253)
T PRK13933 16 INTLAELLSK-YHEVIIVAPENQ 37 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCC
Confidence 6788899975 689999987653
No 189
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=77.44 E-value=4.8 Score=40.15 Aligned_cols=92 Identities=13% Similarity=0.049 Sum_probs=51.9
Q ss_pred ChhhhcccccEEEEeC-----CchHHHHHHHhCCCEEeecCCC-ChhhHHH--HHHHcCCCCCCCCCCCCCHHHHHHHHH
Q 013835 299 PHDWLFLQCKAVVHHG-----GAGTTAAGLRAACPTTIVPFFG-DQPFWGE--RVHARGVGPPPIPVDEFSLPKLINAIN 370 (435)
Q Consensus 299 p~~~~l~~~~l~I~hg-----G~~s~~Eal~~G~P~l~~P~~~-dQ~~na~--~v~~~g~G~~~l~~~~~~~~~l~~~i~ 370 (435)
++.+++.-||+-|..+ |+ |-+||+++|+|.|..-..+ -+..+-. .-...|+- +++..+-+.++.++.|.
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGY-TPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~--VvdR~~~n~~e~v~~la 538 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGY-TPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVY--VVDRRDKNYDESVNQLA 538 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-H-HHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEE--EE-SSSS-HHHHHHHHH
T ss_pred CHHHHhccCceeeeccccccccC-ChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEE--EEeCCCCCHHHHHHHHH
Confidence 5566689999999888 77 9999999999999765432 1111100 11234555 57777778888888887
Q ss_pred Hhc-C-----HHHHHHHHHHHHHhhccCc
Q 013835 371 FML-D-----PKVKERAVELAEAMEKEDG 393 (435)
Q Consensus 371 ~ll-~-----~~~~~~~~~~~~~~~~~~~ 393 (435)
+.| + ..-|...+...+++.+.-.
T Consensus 539 ~~l~~f~~~~~rqri~~Rn~ae~LS~~~d 567 (633)
T PF05693_consen 539 DFLYKFCQLSRRQRIIQRNRAERLSDLAD 567 (633)
T ss_dssp HHHHHHHT--HHHHHHHHHHHHHHGGGGB
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 766 3 3444444444455554433
No 190
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=77.35 E-value=13 Score=28.27 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCCcHHHHHhcCceeEEcc
Q 013835 11 QPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLD 50 (435)
Q Consensus 11 ~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~~g~~~~~i~ 50 (435)
.-+.++|+.|.+.|+++ ++|.+ -.+.+++.|+++..+.
T Consensus 12 ~~~~~~a~~l~~~G~~i-~AT~g-Ta~~L~~~Gi~~~~v~ 49 (112)
T cd00532 12 AMLVDLAPKLSSDGFPL-FATGG-TSRVLADAGIPVRAVS 49 (112)
T ss_pred HHHHHHHHHHHHCCCEE-EECcH-HHHHHHHcCCceEEEE
Confidence 44789999999999988 45544 4567778999887764
No 191
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=75.92 E-value=15 Score=32.62 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCCc
Q 013835 11 QPFVAIGKRLQDYGHRVRLATHSNF 35 (435)
Q Consensus 11 ~p~~~la~~L~~rGh~V~~~~~~~~ 35 (435)
--..+|+++|.+. |+|+++++..-
T Consensus 14 ~Gi~aL~~~l~~~-~~V~VvAP~~~ 37 (250)
T PRK00346 14 PGIRALAEALREL-ADVTVVAPDRE 37 (250)
T ss_pred hhHHHHHHHHHhC-CCEEEEeCCCC
Confidence 3467889999988 79999987653
No 192
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=75.58 E-value=2.4 Score=35.19 Aligned_cols=39 Identities=26% Similarity=0.266 Sum_probs=24.1
Q ss_pred CccCCcccCcCEEEeCCcchhHH-H---HHHH-c-CCCEEEeecc
Q 013835 87 DLDSGIAFKADAIIANPPAYGHV-H---VAEA-L-KIPIHIFFTM 125 (435)
Q Consensus 87 ~~~~~~~~~pDlVi~d~~~~~~~-~---~A~~-~-~iP~v~~~~~ 125 (435)
+.+.+++.+||+||+.....+.. + -++. + ++|++++.+.
T Consensus 81 l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD 125 (169)
T PF06925_consen 81 LIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTD 125 (169)
T ss_pred HHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcC
Confidence 34456677999999986654433 2 1222 4 5888877653
No 193
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.55 E-value=14 Score=34.64 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=37.5
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHH--------HHHhcCceeEEc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKD--------FVLTAGLEFYPL 49 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~--------~~~~~g~~~~~i 49 (435)
+-.-+.|-...|..+|..+.++|+.+-++|.+.|+. .....+++|+.-
T Consensus 107 VGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygs 162 (483)
T KOG0780|consen 107 VGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGS 162 (483)
T ss_pred EeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEec
Confidence 445577889999999999999999999999876642 234567777764
No 194
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=75.05 E-value=20 Score=30.30 Aligned_cols=89 Identities=16% Similarity=0.225 Sum_probs=42.6
Q ss_pred CccchhHHHHHHHHHHHC--CCeEEEEeC-CCcHHHHHhc---CceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHH
Q 013835 6 TRGDVQPFVAIGKRLQDY--GHRVRLATH-SNFKDFVLTA---GLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSL 79 (435)
Q Consensus 6 ~~GH~~p~~~la~~L~~r--Gh~V~~~~~-~~~~~~~~~~---g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (435)
+-|-++-+.+|+++|.++ |+.|.+-+. +...+...+. .+....+| .+. ......++..+
T Consensus 30 SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P------------~D~---~~~~~rfl~~~ 94 (186)
T PF04413_consen 30 SVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLP------------LDF---PWAVRRFLDHW 94 (186)
T ss_dssp SHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---------------SS---HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeC------------ccC---HHHHHHHHHHh
Confidence 457788899999999987 888877764 3333333322 23333333 112 12334444444
Q ss_pred HhhccCCCccCCcccCcCEEEe-CCcchhH-HHHHHHcCCCEEEeec
Q 013835 80 LPACRDPDLDSGIAFKADAIIA-NPPAYGH-VHVAEALKIPIHIFFT 124 (435)
Q Consensus 80 ~~~~~~~~~~~~~~~~pDlVi~-d~~~~~~-~~~A~~~~iP~v~~~~ 124 (435)
+||++|. +.-.+.. +..|++.|||++.+..
T Consensus 95 ---------------~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 95 ---------------RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp -----------------SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred ---------------CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 9999975 4444444 3467888999998753
No 195
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.99 E-value=64 Score=29.08 Aligned_cols=103 Identities=20% Similarity=0.175 Sum_probs=66.8
Q ss_pred CCceEEcCCCChhhh---cccccEEEEeCCchHHHHHHHhCCCEEe--ecCCCChhhHHH--HHHH---cCCCCCCCCCC
Q 013835 289 KDSIYLLDNIPHDWL---FLQCKAVVHHGGAGTTAAGLRAACPTTI--VPFFGDQPFWGE--RVHA---RGVGPPPIPVD 358 (435)
Q Consensus 289 ~~~v~~~~~~p~~~~---l~~~~l~I~hgG~~s~~Eal~~G~P~l~--~P~~~dQ~~na~--~v~~---~g~G~~~l~~~ 358 (435)
+-+|.+.+|+||++. +..||+-+-.|-- |+.-|..+|+|.+= +| |..|+. .++. .=++ -++
T Consensus 237 ~lrvvklPFvpqddyd~LL~lcD~n~VRGED-SFVRAq~agkPflWHIYp----QdentHl~KLeaFldky~~--~lp-- 307 (370)
T COG4394 237 KLRVVKLPFVPQDDYDELLWLCDFNLVRGED-SFVRAQLAGKPFLWHIYP----QDENTHLAKLEAFLDKYCP--FLP-- 307 (370)
T ss_pred ceEEEEecCCcHhHHHHHHHhcccceeecch-HHHHHHHcCCCcEEEecC----CccccHHHHHHHHHHHhCC--CCC--
Confidence 457888999999876 8999998888776 99999999999983 44 333433 2221 1122 122
Q ss_pred CCCHHHHHHHHHHhc-C-----------------HHHHHHHHHHHHHhhcc-CcHHHHHHHHHHh
Q 013835 359 EFSLPKLINAINFML-D-----------------PKVKERAVELAEAMEKE-DGVTGAVKAFFKH 404 (435)
Q Consensus 359 ~~~~~~l~~~i~~ll-~-----------------~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~ 404 (435)
.+.++++++.. + ++.|+.+++.++.+-.. +-+++.+..+++.
T Consensus 308 ----~~~a~alrt~~~~~N~~~ls~~w~~f~~~~~~~r~~a~~wa~~l~~~~dlaekLvaF~ek~ 368 (370)
T COG4394 308 ----PNTAKALRTFWIAWNAGRLSDDWSYFFKNLKEWREHAKKWANHLIKNPDLAEKLVAFIEKI 368 (370)
T ss_pred ----HHHHHHHHHHHHHhcCCcccccHHHHHHhhHHHHHHHHHHHHHHccCccHHHHHHHHHHHh
Confidence 22333333332 1 56788888888876654 4456777777664
No 196
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.85 E-value=25 Score=31.99 Aligned_cols=92 Identities=13% Similarity=0.035 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCCchHHHHHHH----hCCCEE
Q 013835 255 PEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLR----AACPTT 330 (435)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~l~I~hgG~~s~~Eal~----~G~P~l 330 (435)
..+..+.+.+-+++.+..+++-.... ..+. .+. .+..++...+|++|+-||-||++.|+. .++|++
T Consensus 23 ~~~~~~~i~~~l~~~g~~~~~~~~~~--~~~~-~~~-------~~~~~~~~~~Dlvi~iGGDGT~L~aa~~~~~~~~Pil 92 (287)
T PRK14077 23 LDKEILKLQKILSIYKVEILLEKESA--EILD-LPG-------YGLDELFKISDFLISLGGDGTLISLCRKAAEYDKFVL 92 (287)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecchh--hhhc-ccc-------cchhhcccCCCEEEEECCCHHHHHHHHHhcCCCCcEE
Confidence 44556666666766777777542111 1111 110 112233457999999999999998866 378988
Q ss_pred eecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013835 331 IVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 373 (435)
Q Consensus 331 ~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll 373 (435)
.+-... +|. + .+.+.+++.+++.+++
T Consensus 93 GIN~G~-------------lGF--L--t~~~~~~~~~~l~~i~ 118 (287)
T PRK14077 93 GIHAGH-------------LGF--L--TDITVDEAEKFFQAFF 118 (287)
T ss_pred EEeCCC-------------ccc--C--CcCCHHHHHHHHHHHH
Confidence 776322 553 2 2346788999998887
No 197
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=74.16 E-value=58 Score=28.19 Aligned_cols=108 Identities=16% Similarity=0.172 Sum_probs=56.0
Q ss_pred ccchhHHHHHHHHHHHCCCeEEEEeCCC-cHHHHHhc-----CceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHHH
Q 013835 7 RGDVQPFVAIGKRLQDYGHRVRLATHSN-FKDFVLTA-----GLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLL 80 (435)
Q Consensus 7 ~GH~~p~~~la~~L~~rGh~V~~~~~~~-~~~~~~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
..|+...+.+...++.+|=.+.|+.... +.+.++.+ |+....- +..+. +.........+....
T Consensus 91 ~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~~gy~~~~~--------w~~G~--lTN~~~l~g~~~~~~- 159 (251)
T KOG0832|consen 91 ASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRAGGYSHNRK--------WLGGL--LTNARELFGALVRKF- 159 (251)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHhcCceeeee--------eccce--eecchhhcccccccc-
Confidence 4566777888888888999999997544 44444432 3332221 11111 100000011110100
Q ss_pred hhccCCCccCCcccCcCEEEe-CC-cchhHHHHHHHcCCCEEEeeccC
Q 013835 81 PACRDPDLDSGIAFKADAIIA-NP-PAYGHVHVAEALKIPIHIFFTMP 126 (435)
Q Consensus 81 ~~~~~~~~~~~~~~~pDlVi~-d~-~~~~~~~~A~~~~iP~v~~~~~~ 126 (435)
.+.....-.+....||+||+ |+ .-..+.+=|.+.+||+|.+.-..
T Consensus 160 -~~~pd~~~f~~t~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN 206 (251)
T KOG0832|consen 160 -LSLPDALCFLPTLTPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTN 206 (251)
T ss_pred -cCCCcceeecccCCcceeEecCcccccHHHHHHHHhCCCeEEEecCC
Confidence 00111111344457899986 53 33456788999999999885433
No 198
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=74.08 E-value=47 Score=27.16 Aligned_cols=97 Identities=14% Similarity=0.036 Sum_probs=52.2
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCC-CChhhh-ccccc
Q 013835 231 SLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDN-IPHDWL-FLQCK 308 (435)
Q Consensus 231 ~l~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~-~p~~~~-l~~~~ 308 (435)
++-+++.+ .....++.|... +-..+.++..+.+-+++=+.+... .......+.....++ .+.+.+ ...+|
T Consensus 22 ~lg~~La~-~g~~lv~Gg~~G------lM~a~a~ga~~~gg~viGVlp~~l-~~~~~~~~~~i~~~~~~~Rk~~m~~~sd 93 (159)
T TIGR00725 22 RLGKELAK-KGHILINGGRTG------VMEAVSKGAREAGGLVVGILPDED-FAGNPYLTIKVKTGMNFARNFILVRSAD 93 (159)
T ss_pred HHHHHHHH-CCCEEEcCCchh------HHHHHHHHHHHCCCeEEEECChhh-ccCCCCceEEEECCCcchHHHHHHHHCC
Confidence 34455543 446667743322 334455555555666654443221 111112222333444 556666 67788
Q ss_pred EEEE-eCCchHH---HHHHHhCCCEEeecCC
Q 013835 309 AVVH-HGGAGTT---AAGLRAACPTTIVPFF 335 (435)
Q Consensus 309 l~I~-hgG~~s~---~Eal~~G~P~l~~P~~ 335 (435)
.||. -||.||+ .|++.+++|+++++..
T Consensus 94 a~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~ 124 (159)
T TIGR00725 94 VVVSVGGGYGTAIEILGAYALGGPVVVLRGT 124 (159)
T ss_pred EEEEcCCchhHHHHHHHHHHcCCCEEEEECC
Confidence 7665 4556765 5568999999999754
No 199
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=73.78 E-value=3.2 Score=39.86 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=24.9
Q ss_pred ccC-CccchhHHHHHHHHHHHCCCeEEEEeCC
Q 013835 3 IVG-TRGDVQPFVAIGKRLQDYGHRVRLATHS 33 (435)
Q Consensus 3 ~~~-~~GH~~p~~~la~~L~~rGh~V~~~~~~ 33 (435)
|+| ..|.-.++..++++|+++ |+|++++..
T Consensus 9 P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~ 39 (397)
T TIGR03087 9 PYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFV 39 (397)
T ss_pred CCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeC
Confidence 444 678899999999999765 999999854
No 200
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=72.77 E-value=25 Score=32.50 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=38.4
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHH--------HHhcCceeEEc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDF--------VLTAGLEFYPL 49 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~--------~~~~g~~~~~i 49 (435)
+-.-+.|-......||+.|.+.|+.|.+++.+.|+.. .+..|++++.-
T Consensus 145 vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~ 200 (340)
T COG0552 145 VGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISG 200 (340)
T ss_pred EecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEcc
Confidence 4456788899999999999999999999998887643 23467887775
No 201
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=71.58 E-value=22 Score=30.28 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=36.5
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcH--------HHHHhcCceeEEcc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFK--------DFVLTAGLEFYPLD 50 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~--------~~~~~~g~~~~~i~ 50 (435)
+-..|-|=......||..++.+|.+|.+++.+.++ .+.+..|++++...
T Consensus 7 vGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~ 63 (196)
T PF00448_consen 7 VGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVAR 63 (196)
T ss_dssp EESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESS
T ss_pred ECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhh
Confidence 44568888999999999999999999999876542 33445688888764
No 202
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=70.50 E-value=26 Score=33.63 Aligned_cols=47 Identities=17% Similarity=0.343 Sum_probs=36.3
Q ss_pred cCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHH--------HHHhcCceeEEcc
Q 013835 4 VGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKD--------FVLTAGLEFYPLD 50 (435)
Q Consensus 4 ~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~--------~~~~~g~~~~~i~ 50 (435)
.=+.|-...+..||+.|.++|+.|-+++.+-++. ..+..+++|++.+
T Consensus 108 LQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~ 162 (451)
T COG0541 108 LQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSG 162 (451)
T ss_pred ccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCC
Confidence 3477889999999999999999999998665432 2345678877763
No 203
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=70.45 E-value=4.1 Score=31.13 Aligned_cols=91 Identities=19% Similarity=0.122 Sum_probs=49.4
Q ss_pred EEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh--cccccEEEEe-----CC
Q 013835 243 IYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL--FLQCKAVVHH-----GG 315 (435)
Q Consensus 243 v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~--l~~~~l~I~h-----gG 315 (435)
||++..- +........+.+.+++++.+..++ ... +.+..... .+......+=..++ +..||++|-. .+
T Consensus 1 IYlAgp~-F~~~~~~~~~~~~~~L~~~g~~v~--~P~-~~~~~~~~-~~~~~~~~i~~~d~~~i~~~D~via~l~~~~~d 75 (113)
T PF05014_consen 1 IYLAGPF-FSEEQKARVERLREALEKNGFEVY--SPQ-DNDENDEE-DSQEWAREIFERDLEGIRECDIVIANLDGFRPD 75 (113)
T ss_dssp EEEESGG-SSHHHHHHHHHHHHHHHTTTTEEE--GGC-TCSSS--T-TSHHCHHHHHHHHHHHHHHSSEEEEEECSSS--
T ss_pred CEEeCCc-CCHHHHHHHHHHHHHHHhCCCEEE--ecc-cccccccc-ccchHHHHHHHHHHHHHHHCCEEEEECCCCCCC
Confidence 5666443 444445667778888888887544 222 11110001 11111111112222 8999988743 35
Q ss_pred chHHHHH---HHhCCCEEeecCCCCh
Q 013835 316 AGTTAAG---LRAACPTTIVPFFGDQ 338 (435)
Q Consensus 316 ~~s~~Ea---l~~G~P~l~~P~~~dQ 338 (435)
.||..|. .+.|+|++++-....+
T Consensus 76 ~Gt~~ElG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 76 SGTAFELGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHHHHHHHHTTSEEEEEECCCCT
T ss_pred CcHHHHHHHHHHCCCEEEEEEcCCcc
Confidence 7898885 7889999998655443
No 204
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=70.24 E-value=31 Score=32.01 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=26.3
Q ss_pred cccccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcC-CC
Q 013835 304 FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARG-VG 351 (435)
Q Consensus 304 l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g-~G 351 (435)
+..-++.++|||+.... +..-|-.++|.. -.+.+++.| +|
T Consensus 266 l~~~~~~~~HgGYD~~~---an~D~N~v~PlD-----~LreL~~EG~IG 306 (349)
T PF07355_consen 266 LSSDDYMTIHGGYDPAY---ANEDPNRVFPLD-----RLRELEKEGVIG 306 (349)
T ss_pred CCccceEeeccccChhH---hccCCCeeeeHH-----HHHHHHHcCCcc
Confidence 56778999999996543 346777888843 334555554 55
No 205
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=69.58 E-value=35 Score=30.55 Aligned_cols=25 Identities=8% Similarity=0.036 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHCCCeEEEEeCCCc
Q 013835 10 VQPFVAIGKRLQDYGHRVRLATHSNF 35 (435)
Q Consensus 10 ~~p~~~la~~L~~rGh~V~~~~~~~~ 35 (435)
.--..+|+++|.+.| +|+++++..-
T Consensus 13 apGi~aL~~al~~~g-~V~VvAP~~e 37 (266)
T PRK13934 13 SPGLRLLYEFVSPLG-EVDVVAPETP 37 (266)
T ss_pred CHHHHHHHHHHHhCC-cEEEEccCCC
Confidence 344778999998887 7999987653
No 206
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=69.40 E-value=84 Score=29.29 Aligned_cols=97 Identities=13% Similarity=0.048 Sum_probs=57.8
Q ss_pred CCCceEEcCCCChhhh---cccccEEEE-----eCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCC
Q 013835 288 PKDSIYLLDNIPHDWL---FLQCKAVVH-----HGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDE 359 (435)
Q Consensus 288 ~~~~v~~~~~~p~~~~---l~~~~l~I~-----hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~ 359 (435)
++.+|.+...+|.+++ +..|..-|| |=|. ++.|.+++|.=.|+=-..+--.+.-.--...-.|. + .
T Consensus 335 i~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGI-sVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGF--l---a 408 (465)
T KOG1387|consen 335 IPKHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGI-SVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGF--L---A 408 (465)
T ss_pred CccceEEEecCCHHHHHHHhccceeehhhhhhhhcch-hHHHHHhcCceEEEeCCCCCceeeeeccCCcccee--e---c
Confidence 6889999999999998 677666554 5566 78999999976554322211111000001112342 2 1
Q ss_pred CCHHHHHHHHHHhc--CHH----HHHHHHHHHHHhhc
Q 013835 360 FSLPKLINAINFML--DPK----VKERAVELAEAMEK 390 (435)
Q Consensus 360 ~~~~~l~~~i~~ll--~~~----~~~~~~~~~~~~~~ 390 (435)
.|.++-++++.+++ |.+ +|.++++-..+|.+
T Consensus 409 ~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE 445 (465)
T KOG1387|consen 409 PTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGE 445 (465)
T ss_pred CChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhH
Confidence 36788999998877 654 44444444444444
No 207
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.34 E-value=9.8 Score=34.15 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=40.2
Q ss_pred ccccEEEEeCCchHHHHHHH------hCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC
Q 013835 305 LQCKAVVHHGGAGTTAAGLR------AACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD 374 (435)
Q Consensus 305 ~~~~l~I~hgG~~s~~Eal~------~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll~ 374 (435)
..+|++|+-||=||++.|+. .++|++.+.. ..+|. + .+.+++++.+.+.++++
T Consensus 34 ~~~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~-------------G~lGF--L--~~~~~~~~~~~l~~i~~ 92 (265)
T PRK04885 34 KNPDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHT-------------GHLGF--Y--TDWRPFEVDKLVIALAK 92 (265)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeC-------------CCcee--c--ccCCHHHHHHHHHHHHc
Confidence 36799999999999999986 4889997763 23553 2 24467888888888874
No 208
>PRK12342 hypothetical protein; Provisional
Probab=69.25 E-value=27 Score=31.11 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=21.8
Q ss_pred CcCEEEeCCcc------hhHHHHHHHcCCCEEEee
Q 013835 95 KADAIIANPPA------YGHVHVAEALKIPIHIFF 123 (435)
Q Consensus 95 ~pDlVi~d~~~------~~~~~~A~~~~iP~v~~~ 123 (435)
.||+|++...+ .-+..+|+.+|+|+++..
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v 143 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAV 143 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeE
Confidence 69999985222 225789999999998764
No 209
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=69.13 E-value=48 Score=30.17 Aligned_cols=28 Identities=32% Similarity=0.544 Sum_probs=24.7
Q ss_pred cCCccchhHHHHHHHHHHHCCCeEEEEe
Q 013835 4 VGTRGDVQPFVAIGKRLQDYGHRVRLAT 31 (435)
Q Consensus 4 ~~~~GH~~p~~~la~~L~~rGh~V~~~~ 31 (435)
.|+.|--.-.-+|.+.|.++||+|-+++
T Consensus 59 ~PGaGKSTli~~L~~~l~~~G~rVaVlA 86 (323)
T COG1703 59 VPGAGKSTLIEALGRELRERGHRVAVLA 86 (323)
T ss_pred CCCCchHHHHHHHHHHHHHCCcEEEEEE
Confidence 5677888888899999999999999985
No 210
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=68.85 E-value=33 Score=33.43 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=22.1
Q ss_pred ccCcCEEEeCCcchhHHHHHHHcCCCEEEe
Q 013835 93 AFKADAIIANPPAYGHVHVAEALKIPIHIF 122 (435)
Q Consensus 93 ~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~ 122 (435)
+.+||+++.++.. ..+|+++|||++-+
T Consensus 371 ~~~~dliig~s~~---k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 371 AAGADLLITNSHG---RALAQRLALPLVRA 397 (432)
T ss_pred hcCCCEEEECcch---HHHHHHcCCCEEEe
Confidence 3489999998754 67999999999865
No 211
>PLN02929 NADH kinase
Probab=68.82 E-value=8.7 Score=35.05 Aligned_cols=95 Identities=14% Similarity=0.013 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCCchHHHHHHH---hCCCEEee
Q 013835 256 EKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLR---AACPTTIV 332 (435)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~l~I~hgG~~s~~Eal~---~G~P~l~~ 332 (435)
+...+.+.+.+++.+..+..... .+ + . .....+|++|+-||-||++.|.. .++|++.+
T Consensus 33 ~~~~~~~~~~L~~~gi~~~~v~r-~~---~-~--------------~~~~~~Dlvi~lGGDGT~L~aa~~~~~~iPvlGI 93 (301)
T PLN02929 33 KDTVNFCKDILQQKSVDWECVLR-NE---L-S--------------QPIRDVDLVVAVGGDGTLLQASHFLDDSIPVLGV 93 (301)
T ss_pred HHHHHHHHHHHHHcCCEEEEeec-cc---c-c--------------cccCCCCEEEEECCcHHHHHHHHHcCCCCcEEEE
Confidence 34566677788887877643321 11 1 0 11267899999999999999855 47899998
Q ss_pred cCCC------ChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC
Q 013835 333 PFFG------DQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD 374 (435)
Q Consensus 333 P~~~------dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll~ 374 (435)
-... +++.|..- +..-.|. .. +.+.+++.+.|.++++
T Consensus 94 N~Gp~~~~~~~~~~~~~~-~~r~lGf-L~---~~~~~~~~~~L~~il~ 136 (301)
T PLN02929 94 NSDPTQKDEVEEYSDEFD-ARRSTGH-LC---AATAEDFEQVLDDVLF 136 (301)
T ss_pred ECCCcccccccccccccc-cccCccc-cc---cCCHHHHHHHHHHHHc
Confidence 6542 22333321 2234674 33 3357899999999983
No 212
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.73 E-value=11 Score=34.46 Aligned_cols=101 Identities=17% Similarity=0.135 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCC---CCceEEcCCCChhhhcccccEEEEeCCchHHHHHHHh----CCC
Q 013835 256 EKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEP---KDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLRA----ACP 328 (435)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~---~~~v~~~~~~p~~~~l~~~~l~I~hgG~~s~~Eal~~----G~P 328 (435)
.+..+.+.+-+++.+..+++-.... ..+... ..+. ....+...+...+|++|+=||=||++.|+.. ++|
T Consensus 15 ~~~~~~i~~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~dlvi~lGGDGT~L~aa~~~~~~~~P 90 (292)
T PRK01911 15 SPYIQELFDELEERGAEVLIEEKFL--DFLKQDLKFHPSY--DTFSDNEELDGSADMVISIGGDGTFLRTATYVGNSNIP 90 (292)
T ss_pred HHHHHHHHHHHHHCCCEEEEecchh--hhhcccccccccc--ccccchhhcccCCCEEEEECCcHHHHHHHHHhcCCCCC
Confidence 4455666666667777777532110 111000 0000 0010223334578999999999999999873 789
Q ss_pred EEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 013835 329 TTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPKV 377 (435)
Q Consensus 329 ~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll~~~~ 377 (435)
++.+-... +|. + .+.+++++.+++.++++.+|
T Consensus 91 ilGIN~G~-------------lGF--L--t~~~~~~~~~~l~~i~~g~~ 122 (292)
T PRK01911 91 ILGINTGR-------------LGF--L--ATVSKEEIEETIDELLNGDY 122 (292)
T ss_pred EEEEecCC-------------CCc--c--cccCHHHHHHHHHHHHcCCc
Confidence 99876422 564 2 24467899999999883333
No 213
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=68.39 E-value=61 Score=26.94 Aligned_cols=49 Identities=14% Similarity=0.187 Sum_probs=32.9
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEe---CC---CcHHHHHhcCceeEEcc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLAT---HS---NFKDFVLTAGLEFYPLD 50 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~---~~---~~~~~~~~~g~~~~~i~ 50 (435)
.+.++.|-..-.+.+|-+...+|++|.++- .. .-...++..++.+...+
T Consensus 11 ~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g 65 (173)
T TIGR00708 11 HTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMG 65 (173)
T ss_pred ECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECC
Confidence 355677888888888888888999997662 21 11233444478888776
No 214
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=68.38 E-value=1.2e+02 Score=29.29 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=27.7
Q ss_pred CccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHh
Q 013835 6 TRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLT 41 (435)
Q Consensus 6 ~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~ 41 (435)
|.....-...+.+.|.+.|++|.++.++...+.+..
T Consensus 15 Gsiaa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 15 GGIAAYKALELVRRLRKAGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhH
Confidence 344556678899999999999999987776665554
No 215
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=68.12 E-value=43 Score=31.96 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=28.4
Q ss_pred CCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHH
Q 013835 5 GTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFV 39 (435)
Q Consensus 5 ~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~ 39 (435)
|+.|--.-+++++..|+++| +|.+++.++....+
T Consensus 102 PGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qi 135 (456)
T COG1066 102 PGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQI 135 (456)
T ss_pred CCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHH
Confidence 57778888999999999999 99999987765443
No 216
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=67.96 E-value=65 Score=27.14 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCCcH--HHHHhcCceeEEcc
Q 013835 12 PFVAIGKRLQDYGHRVRLATHSNFK--DFVLTAGLEFYPLD 50 (435)
Q Consensus 12 p~~~la~~L~~rGh~V~~~~~~~~~--~~~~~~g~~~~~i~ 50 (435)
-+-.|+..|.++||+|+++|..... ..-.-.|++.+.++
T Consensus 22 ~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~ 62 (185)
T PF09314_consen 22 FVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIP 62 (185)
T ss_pred HHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeC
Confidence 4567888899999999999865433 22223577777776
No 217
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=67.46 E-value=15 Score=34.49 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=36.3
Q ss_pred CceEEcCCCChhhh---cccccEEEEeCCchHHHHHHHhCCCEE
Q 013835 290 DSIYLLDNIPHDWL---FLQCKAVVHHGGAGTTAAGLRAACPTT 330 (435)
Q Consensus 290 ~~v~~~~~~p~~~~---l~~~~l~I~hgG~~s~~Eal~~G~P~l 330 (435)
-.+.+.+|+||.+. |-+||+-+-+|== |+.-|..+|+|.|
T Consensus 244 l~l~~lPF~~Q~~yD~LLw~cD~NfVRGED-SfVRAqwAgkPFv 286 (374)
T PF10093_consen 244 LTLHVLPFVPQDDYDRLLWACDFNFVRGED-SFVRAQWAGKPFV 286 (374)
T ss_pred eEEEECCCCCHHHHHHHHHhCccceEecch-HHHHHHHhCCCce
Confidence 46788899999886 9999999999887 9999999999999
No 218
>PRK10867 signal recognition particle protein; Provisional
Probab=66.90 E-value=32 Score=33.40 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=37.2
Q ss_pred cccCCccchhHHHHHHHHHHHC-CCeEEEEeCCCcHHH--------HHhcCceeEEcc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDY-GHRVRLATHSNFKDF--------VLTAGLEFYPLD 50 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~r-Gh~V~~~~~~~~~~~--------~~~~g~~~~~i~ 50 (435)
+..++.|=...+..||..|+++ |++|.+++.+.++.. .+..|++++..+
T Consensus 106 vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~ 163 (433)
T PRK10867 106 VGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSG 163 (433)
T ss_pred ECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecC
Confidence 4567888999999999999998 999999987654332 345677776653
No 219
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=66.87 E-value=44 Score=28.46 Aligned_cols=49 Identities=8% Similarity=-0.158 Sum_probs=34.0
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCC----CcHHHHHhcCceeEEcc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHS----NFKDFVLTAGLEFYPLD 50 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~----~~~~~~~~~g~~~~~i~ 50 (435)
.+.++-.|-....-++..|..+|++|+++..+ ++.+.+.+.+..++.+.
T Consensus 90 ~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS 142 (197)
T TIGR02370 90 GVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGS 142 (197)
T ss_pred EeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 45566678777877788888888888888533 34455666777777764
No 220
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=66.49 E-value=30 Score=33.48 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=29.7
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcH
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFK 36 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~ 36 (435)
+..++.|=...+..||..|.++|++|.+++.+.++
T Consensus 106 vG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 106 VGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 45678888999999999999999999999876553
No 221
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.37 E-value=31 Score=31.81 Aligned_cols=68 Identities=15% Similarity=0.055 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCCchHHHHHHHh----CCCEEe
Q 013835 256 EKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLRA----ACPTTI 331 (435)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~l~I~hgG~~s~~Eal~~----G~P~l~ 331 (435)
.+.++.+.+.+++.+..+.+......... . . .+ . ...-..+|++|+-||-||+++++.. ++|++.
T Consensus 18 ~~~~~~i~~~L~~~g~~v~v~~~~~~~~~---~--~----~~-~-~~~~~~~d~vi~~GGDGT~l~~~~~~~~~~~pv~g 86 (305)
T PRK02645 18 KEAAERCAKQLEARGCKVLMGPSGPKDNP---Y--P----VF-L-ASASELIDLAIVLGGDGTVLAAARHLAPHDIPILS 86 (305)
T ss_pred HHHHHHHHHHHHHCCCEEEEecCchhhcc---c--c----ch-h-hccccCcCEEEEECCcHHHHHHHHHhccCCCCEEE
Confidence 34566677777777877665432111000 0 0 01 1 2223568999999999999999864 789998
Q ss_pred ecC
Q 013835 332 VPF 334 (435)
Q Consensus 332 ~P~ 334 (435)
+..
T Consensus 87 in~ 89 (305)
T PRK02645 87 VNV 89 (305)
T ss_pred Eec
Confidence 875
No 222
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=64.53 E-value=45 Score=28.47 Aligned_cols=49 Identities=14% Similarity=-0.012 Sum_probs=33.5
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCC----CcHHHHHhcCceeEEcc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHS----NFKDFVLTAGLEFYPLD 50 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~----~~~~~~~~~g~~~~~i~ 50 (435)
.+.++-.|-....-++..|.+.|++|+++..+ ++.+.+.+.+..++.+.
T Consensus 88 ~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS 140 (201)
T cd02070 88 GTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLS 140 (201)
T ss_pred EecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 45667778888877888888888888777532 34445556677776664
No 223
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.42 E-value=17 Score=33.17 Aligned_cols=59 Identities=12% Similarity=0.109 Sum_probs=42.7
Q ss_pred hhcccccEEEEeCCchHHHHHHH----hCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 013835 302 WLFLQCKAVVHHGGAGTTAAGLR----AACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPKV 377 (435)
Q Consensus 302 ~~l~~~~l~I~hgG~~s~~Eal~----~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll~~~~ 377 (435)
++...+|++|+=||=||++.|+. .++|++.+-... +|. + .+.+++++.+++.++++..|
T Consensus 59 ~~~~~~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G~-------------lGF--l--~~~~~~~~~~~l~~i~~g~~ 121 (292)
T PRK03378 59 EIGQQADLAIVVGGDGNMLGAARVLARYDIKVIGINRGN-------------LGF--L--TDLDPDNALQQLSDVLEGHY 121 (292)
T ss_pred hcCCCCCEEEEECCcHHHHHHHHHhcCCCCeEEEEECCC-------------CCc--c--cccCHHHHHHHHHHHHcCCc
Confidence 33457999999999999999975 367888776422 454 2 23467899999999884333
No 224
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=63.77 E-value=44 Score=25.47 Aligned_cols=85 Identities=20% Similarity=0.403 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCCcHHHHHhcCceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHHHhhccCCCccC
Q 013835 11 QPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLLPACRDPDLDS 90 (435)
Q Consensus 11 ~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (435)
.-+.++|+.|.+.|+++. .|. .-.+.+.+.|+.+..+....+. +..+ .+.+..++.
T Consensus 13 ~~~~~~a~~l~~~G~~i~-aT~-gTa~~L~~~gi~~~~v~~~~~~-----~~~~----~~~i~~~i~------------- 68 (116)
T cd01423 13 PELLPTAQKLSKLGYKLY-ATE-GTADFLLENGIPVTPVAWPSEE-----PQND----KPSLRELLA------------- 68 (116)
T ss_pred hhHHHHHHHHHHCCCEEE-Ecc-HHHHHHHHcCCCceEeeeccCC-----CCCC----chhHHHHHH-------------
Confidence 347899999999999883 454 3456677889877666310000 0000 012222222
Q ss_pred CcccCcCEEEeCCc---------chhHHHHHHHcCCCEEE
Q 013835 91 GIAFKADAIIANPP---------AYGHVHVAEALKIPIHI 121 (435)
Q Consensus 91 ~~~~~pDlVi~d~~---------~~~~~~~A~~~~iP~v~ 121 (435)
+-++|+||..+. .+.-.-.|-.++||+++
T Consensus 69 --~~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 69 --EGKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred --cCCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 228899997432 23335678899999975
No 225
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=63.05 E-value=51 Score=30.58 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=36.3
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcH--------HHHHhcCceeEEcc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFK--------DFVLTAGLEFYPLD 50 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~--------~~~~~~g~~~~~i~ 50 (435)
+..+|.|=..-+..||..++.+|++|.++..+.++ ......+++++..+
T Consensus 120 vGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~ 176 (318)
T PRK10416 120 VGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQK 176 (318)
T ss_pred ECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeC
Confidence 44567888889999999999999999999866432 23445677776653
No 226
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.91 E-value=12 Score=33.91 Aligned_cols=94 Identities=15% Similarity=0.118 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh-cccccEEEEeCCchHHHHHHH---hCCCEE
Q 013835 255 PEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL-FLQCKAVVHHGGAGTTAAGLR---AACPTT 330 (435)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~~~~l~I~hgG~~s~~Eal~---~G~P~l 330 (435)
..+.++.+.+.+++.+..+.+...... ...... ..+...+ -..+|++|.-||-||+++++. .++|++
T Consensus 14 ~~~~~~~I~~~L~~~g~~v~v~~~~~~--~~~~~~-------~~~~~~~~~~~~d~vi~iGGDGTlL~a~~~~~~~~pi~ 84 (277)
T PRK03708 14 ALKLAYRVYDFLKVSGYEVVVDSETYE--HLPEFS-------EEDVLPLEEMDVDFIIAIGGDGTILRIEHKTKKDIPIL 84 (277)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecchhh--hcCccc-------ccccccccccCCCEEEEEeCcHHHHHHHHhcCCCCeEE
Confidence 445677777778888888776421110 010000 0000111 136899999999999999984 356888
Q ss_pred eecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC
Q 013835 331 IVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD 374 (435)
Q Consensus 331 ~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll~ 374 (435)
.++... +|. + .+++++++.+++..+++
T Consensus 85 gIn~G~-------------lGF--l--~~~~~~~~~~~l~~i~~ 111 (277)
T PRK03708 85 GINMGT-------------LGF--L--TEVEPEETFFALSRLLE 111 (277)
T ss_pred EEeCCC-------------CCc--c--ccCCHHHHHHHHHHHHc
Confidence 888532 343 2 23457888888888873
No 227
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=62.48 E-value=8.7 Score=29.66 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCCc
Q 013835 11 QPFVAIGKRLQDYGHRVRLATHSNF 35 (435)
Q Consensus 11 ~p~~~la~~L~~rGh~V~~~~~~~~ 35 (435)
....+++.+..+|||+|.++..+++
T Consensus 18 DTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 18 DTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred ChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 3578899999999999999987754
No 228
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=62.32 E-value=60 Score=26.26 Aligned_cols=136 Identities=16% Similarity=0.169 Sum_probs=64.3
Q ss_pred cEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCCch----
Q 013835 242 PIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAG---- 317 (435)
Q Consensus 242 ~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~l~I~hgG~~---- 317 (435)
.|.|-+||.+. ....+.+.+.+++.+..+-+-..... ..|+++ ..++..-+ ...+++||.-.|..
T Consensus 2 ~V~Ii~gs~SD---~~~~~~a~~~L~~~gi~~~~~V~saH-----R~p~~l--~~~~~~~~-~~~~~viIa~AG~~a~Lp 70 (150)
T PF00731_consen 2 KVAIIMGSTSD---LPIAEEAAKTLEEFGIPYEVRVASAH-----RTPERL--LEFVKEYE-ARGADVIIAVAGMSAALP 70 (150)
T ss_dssp EEEEEESSGGG---HHHHHHHHHHHHHTT-EEEEEE--TT-----TSHHHH--HHHHHHTT-TTTESEEEEEEESS--HH
T ss_pred eEEEEeCCHHH---HHHHHHHHHHHHHcCCCEEEEEEecc-----CCHHHH--HHHHHHhc-cCCCEEEEEECCCcccch
Confidence 45566676542 33556677888887754433221111 011111 00000000 13478898888763
Q ss_pred HHHHHHHhCCCEEeecCCCChhhHHHH---HHHc--CCCCCCCCCCC-CCHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 013835 318 TTAAGLRAACPTTIVPFFGDQPFWGER---VHAR--GVGPPPIPVDE-FSLPKLINAINFMLDPKVKERAVELAEAME 389 (435)
Q Consensus 318 s~~Eal~~G~P~l~~P~~~dQ~~na~~---v~~~--g~G~~~l~~~~-~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 389 (435)
++.-++ .-+|+|.+|....+...... +..+ |+++-.+..++ .+..-++-.|..+-|++++++.+..+++..
T Consensus 71 gvva~~-t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~~d~~l~~kl~~~~~~~~ 147 (150)
T PF00731_consen 71 GVVASL-TTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILALKDPELREKLRAYREKMK 147 (150)
T ss_dssp HHHHHH-SSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred hhheec-cCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 233333 37999999987765543332 2222 55531122221 123344444444448999999988777654
No 229
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=61.94 E-value=90 Score=29.25 Aligned_cols=28 Identities=36% Similarity=0.577 Sum_probs=21.7
Q ss_pred CcCEEEeCCcchhHHHHHHHcCCCEEEeec
Q 013835 95 KADAIIANPPAYGHVHVAEALKIPIHIFFT 124 (435)
Q Consensus 95 ~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~ 124 (435)
+-|++|+.- .+.+.+|..+|+|+|.++.
T Consensus 261 ~a~l~I~nD--TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 261 ACKAIVTND--SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred hCCEEEecC--ChHHHHHHHhCCCEEEEEC
Confidence 458888742 3447899999999999864
No 230
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=61.72 E-value=60 Score=29.32 Aligned_cols=49 Identities=18% Similarity=0.363 Sum_probs=36.3
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcH--------HHHHhcCceeEEcc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFK--------DFVLTAGLEFYPLD 50 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~--------~~~~~~g~~~~~i~ 50 (435)
+..+|.|=...+..||..|++.|++|.++..+.++ ...+..|++++...
T Consensus 78 ~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~ 134 (272)
T TIGR00064 78 VGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQK 134 (272)
T ss_pred ECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCC
Confidence 45678888999999999999999999999866432 23345676666543
No 231
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=61.65 E-value=1.1e+02 Score=26.71 Aligned_cols=98 Identities=17% Similarity=0.136 Sum_probs=57.5
Q ss_pred cEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCCchHHHH
Q 013835 242 PIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAA 321 (435)
Q Consensus 242 ~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~l~I~hgG~~s~~E 321 (435)
+-....||.....+++.-+...+.+++.+-.|++..+++.. .|+ -...-|
T Consensus 32 I~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a-----~PG-------------------------P~~ARE 81 (277)
T PRK00994 32 IDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNPA-----APG-------------------------PKKARE 81 (277)
T ss_pred ceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCC-----CCC-------------------------chHHHH
Confidence 44455666666667766555555667777777777766542 222 113344
Q ss_pred HHH-hCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCH
Q 013835 322 GLR-AACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDP 375 (435)
Q Consensus 322 al~-~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll~~ 375 (435)
.+. .|+|.|++....--..- ..+++.|.|. .+-. .|-+.-+=++.|||
T Consensus 82 ~l~~~~iP~IvI~D~p~~K~~-d~l~~~g~GY-Iivk----~DpMIGArREFLDP 130 (277)
T PRK00994 82 ILKAAGIPCIVIGDAPGKKVK-DAMEEQGLGY-IIVK----ADPMIGARREFLDP 130 (277)
T ss_pred HHHhcCCCEEEEcCCCccchH-HHHHhcCCcE-EEEe----cCccccchhhccCH
Confidence 443 57999999765432222 8899999995 5432 23334444555554
No 232
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=61.25 E-value=33 Score=33.61 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=19.9
Q ss_pred CcCEEEeCCcc---hhHHHHHHHcCCCEEEe
Q 013835 95 KADAIIANPPA---YGHVHVAEALKIPIHIF 122 (435)
Q Consensus 95 ~pDlVi~d~~~---~~~~~~A~~~~iP~v~~ 122 (435)
++|+||..+.. .+.+..|+..|+|++.-
T Consensus 58 ~~d~vV~spgi~~~~p~~~~a~~~~i~v~~~ 88 (448)
T TIGR01082 58 DADVVVVSAAIKDDNPEIVEAKERGIPVIRR 88 (448)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHcCCceEeH
Confidence 47889886433 34467788899999863
No 233
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=60.58 E-value=41 Score=32.69 Aligned_cols=31 Identities=23% Similarity=0.155 Sum_probs=24.1
Q ss_pred CCcccCcCEEEeCCcchhHHHHHHHcCCCEEEee
Q 013835 90 SGIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 123 (435)
Q Consensus 90 ~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~ 123 (435)
.+++.+||+||.++.. ..+|+++|+|++.+.
T Consensus 366 ~i~~~~pdliig~~~~---~~~a~~~~ip~i~~~ 396 (428)
T cd01965 366 LAKEEPVDLLIGNSHG---RYLARDLGIPLVRVG 396 (428)
T ss_pred HhhccCCCEEEECchh---HHHHHhcCCCEEEec
Confidence 3455689999999765 468888999998653
No 234
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=59.71 E-value=52 Score=28.94 Aligned_cols=79 Identities=30% Similarity=0.478 Sum_probs=42.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCc--HHHHH--hcCce--eEEccccccCCCCCCCCCchhhHHHHHHHHHHHHHhhccCC
Q 013835 13 FVAIGKRLQDYGHRVRLATHSNF--KDFVL--TAGLE--FYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLLPACRDP 86 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~~--~~~~~--~~g~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (435)
..+|++.|.++|.+|.++.++.- .+... ..+.. ++.+. +..++. .+..++.
T Consensus 126 ~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~l~----e~~ali~--------- 182 (247)
T PF01075_consen 126 WAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLA----------GKTSLR----ELAALIS--------- 182 (247)
T ss_dssp HHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEET----------TTS-HH----HHHHHHH---------
T ss_pred HHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeec----------CCCCHH----HHHHHHh---------
Confidence 68899999999988888776544 22221 12322 33332 011221 1222221
Q ss_pred CccCCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeec
Q 013835 87 DLDSGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFT 124 (435)
Q Consensus 87 ~~~~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~ 124 (435)
+-|++|+.- .+.+.+|...|+|+|.++.
T Consensus 183 --------~a~~~I~~D--tg~~HlA~a~~~p~v~lfg 210 (247)
T PF01075_consen 183 --------RADLVIGND--TGPMHLAAALGTPTVALFG 210 (247)
T ss_dssp --------TSSEEEEES--SHHHHHHHHTT--EEEEES
T ss_pred --------cCCEEEecC--ChHHHHHHHHhCCEEEEec
Confidence 569998732 3347899999999999863
No 235
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=59.43 E-value=4.1 Score=20.82 Aligned_cols=11 Identities=36% Similarity=1.220 Sum_probs=8.9
Q ss_pred ceeecccccCC
Q 013835 425 FFSISRCFGCS 435 (435)
Q Consensus 425 ~~~~~~~~~~~ 435 (435)
++..+||.||.
T Consensus 4 ~iD~~rCiGC~ 14 (22)
T PF12797_consen 4 VIDLERCIGCG 14 (22)
T ss_pred EEccccccCch
Confidence 56789999994
No 236
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.23 E-value=32 Score=30.73 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=40.2
Q ss_pred ccccEEEEeCCchHHHHHHH-hCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC
Q 013835 305 LQCKAVVHHGGAGTTAAGLR-AACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD 374 (435)
Q Consensus 305 ~~~~l~I~hgG~~s~~Eal~-~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll~ 374 (435)
..+|++|+=||-||++.|+. +++|++.+-... +|. .. +.+.+++.+.+.++++
T Consensus 40 ~~~d~vi~iGGDGT~L~a~~~~~~Pilgin~G~-------------lGf-l~---~~~~~~~~~~l~~~~~ 93 (256)
T PRK14075 40 VTADLIIVVGGDGTVLKAAKKVGTPLVGFKAGR-------------LGF-LS---SYTLEEIDRFLEDLKN 93 (256)
T ss_pred CCCCEEEEECCcHHHHHHHHHcCCCEEEEeCCC-------------Ccc-cc---ccCHHHHHHHHHHHHc
Confidence 57799999999999999976 588888776321 564 22 4467888888888873
No 237
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.64 E-value=35 Score=30.80 Aligned_cols=52 Identities=23% Similarity=0.405 Sum_probs=40.5
Q ss_pred cccEEEEeCCchHHHHHHH-hCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC
Q 013835 306 QCKAVVHHGGAGTTAAGLR-AACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD 374 (435)
Q Consensus 306 ~~~l~I~hgG~~s~~Eal~-~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll~ 374 (435)
.+|++|+=||-||++.|+. ...|++.+-. ..+|. + .+.+.+++.+++.++++
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~~~PilGIN~-------------G~lGF--L--~~~~~~~~~~~l~~i~~ 104 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRAKGPILGINM-------------GGLGF--L--TEIEIDEVGSAIKKLIR 104 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHcCCCEEEEEC-------------CCCcc--C--cccCHHHHHHHHHHHHc
Confidence 6899999999999999988 4568887653 23464 3 24578999999999983
No 238
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=58.30 E-value=9.5 Score=31.13 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=37.1
Q ss_pred cCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHhcCceeEEccc
Q 013835 4 VGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLDM 51 (435)
Q Consensus 4 ~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~~g~~~~~i~~ 51 (435)
.|+.|-..-+..+|..|.+.|+.|-=+-.++.++--...||..+.+..
T Consensus 13 ~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~t 60 (179)
T COG1618 13 RPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLAT 60 (179)
T ss_pred CCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccC
Confidence 468889999999999999999999644444455555567888888863
No 239
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=57.54 E-value=99 Score=27.31 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=32.4
Q ss_pred chhHHHHHHHHHHHCCC-eEEEEeCC------CcHHHHHhcCceeEEcc
Q 013835 9 DVQPFVAIGKRLQDYGH-RVRLATHS------NFKDFVLTAGLEFYPLD 50 (435)
Q Consensus 9 H~~p~~~la~~L~~rGh-~V~~~~~~------~~~~~~~~~g~~~~~i~ 50 (435)
=++|..++.++|+.-|. +|-++|+- ...+++++.|+++..+.
T Consensus 104 ~tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~ 152 (239)
T TIGR02990 104 VVTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFT 152 (239)
T ss_pred eeCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeee
Confidence 36788999999999995 78888752 23456778999998874
No 240
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=57.48 E-value=81 Score=29.66 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=21.6
Q ss_pred CcCEEEeCCcchhHHHHHHHcCCCEEEeec
Q 013835 95 KADAIIANPPAYGHVHVAEALKIPIHIFFT 124 (435)
Q Consensus 95 ~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~ 124 (435)
+-|++|+.- .+.+.+|..+|+|+|.++.
T Consensus 262 ~a~l~v~nD--SGp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 262 HAQLFIGVD--SAPAHIAAAVNTPLICLFG 289 (352)
T ss_pred hCCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 458888742 3447899999999999864
No 241
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=57.34 E-value=87 Score=30.48 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=23.8
Q ss_pred CcccCcCEEEeCCcchhHHHHHHHcCCCEEEee
Q 013835 91 GIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 123 (435)
Q Consensus 91 ~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~ 123 (435)
+++.+||++|.++.. ..+|+++|||++.+.
T Consensus 368 l~~~~~dliiG~s~~---~~~a~~~~ip~~~~~ 397 (429)
T cd03466 368 AKELKIDVLIGNSYG---RRIAEKLGIPLIRIG 397 (429)
T ss_pred HHhcCCCEEEECchh---HHHHHHcCCCEEEec
Confidence 344589999999764 579999999998653
No 242
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=57.18 E-value=14 Score=32.89 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=27.5
Q ss_pred ccCCccchhHHHHHHHHHHHCCCeEEEEeCCC
Q 013835 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (435)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~ 34 (435)
.-|+.|-.....++|..+++.|++|.++..+.
T Consensus 7 gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~ 38 (254)
T cd00550 7 GKGGVGKTTISAATAVRLAEQGKKVLLVSTDP 38 (254)
T ss_pred CCCCchHHHHHHHHHHHHHHCCCCceEEeCCC
Confidence 34678899999999999999999999997554
No 243
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.18 E-value=42 Score=30.26 Aligned_cols=61 Identities=11% Similarity=0.075 Sum_probs=42.7
Q ss_pred hhhhcccccEEEEeCCchHHHHHHH----hCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-C
Q 013835 300 HDWLFLQCKAVVHHGGAGTTAAGLR----AACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML-D 374 (435)
Q Consensus 300 ~~~~l~~~~l~I~hgG~~s~~Eal~----~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll-~ 374 (435)
..++...+|++|+=||=||++.|+. .++|++.+-.. .+|. .. +.+++++.+.+..++ +
T Consensus 36 ~~~~~~~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn~G-------------~lGF-L~---~~~~~~~~~~l~~~~~~ 98 (272)
T PRK02231 36 LEEIGQRAQLAIVIGGDGNMLGRARVLAKYDIPLIGINRG-------------NLGF-LT---DIDPKNAYEQLEACLER 98 (272)
T ss_pred hHHhCcCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCC-------------CCcc-cc---cCCHHHHHHHHHHHHhc
Confidence 3444567899999999999998865 36899977532 2564 22 346788888888776 3
Q ss_pred HHH
Q 013835 375 PKV 377 (435)
Q Consensus 375 ~~~ 377 (435)
.+|
T Consensus 99 g~~ 101 (272)
T PRK02231 99 GEF 101 (272)
T ss_pred CCc
Confidence 444
No 244
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=57.14 E-value=1.7e+02 Score=27.29 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=23.7
Q ss_pred CcCEEEe-CCc-chhHHHHHHHcCCCEEEeeccC
Q 013835 95 KADAIIA-NPP-AYGHVHVAEALKIPIHIFFTMP 126 (435)
Q Consensus 95 ~pDlVi~-d~~-~~~~~~~A~~~~iP~v~~~~~~ 126 (435)
.||+||+ |+. ...+..=|.++|||+|.+.-+.
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 6999975 543 2345778999999999986433
No 245
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=57.12 E-value=1e+02 Score=28.61 Aligned_cols=28 Identities=36% Similarity=0.568 Sum_probs=21.5
Q ss_pred CcCEEEeCCcchhHHHHHHHcCCCEEEeec
Q 013835 95 KADAIIANPPAYGHVHVAEALKIPIHIFFT 124 (435)
Q Consensus 95 ~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~ 124 (435)
+-|++|+.- .+.+.+|..+|+|+|+++.
T Consensus 251 ~a~l~I~~D--SGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 251 LAKAVVTND--SGLMHVAAALNRPLVALYG 278 (334)
T ss_pred hCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 459999742 3347899999999999864
No 246
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=56.96 E-value=9.2 Score=37.25 Aligned_cols=113 Identities=15% Similarity=0.071 Sum_probs=53.2
Q ss_pred CCccchhHHHHHHHHHHH--------CCC----eEEEEeC---CC----cH----HHHHhcCceeEEccccccCCCCCCC
Q 013835 5 GTRGDVQPFVAIGKRLQD--------YGH----RVRLATH---SN----FK----DFVLTAGLEFYPLDMVKNKGFLPSG 61 (435)
Q Consensus 5 ~~~GH~~p~~~la~~L~~--------rGh----~V~~~~~---~~----~~----~~~~~~g~~~~~i~~~~~~~~~~~~ 61 (435)
.+.|.+-=.+.+|++|.+ .|. +|.++|. +. +. ......+...+.+|...+.+... .
T Consensus 294 DTGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~gt~~a~IlRvPF~~~~gi~~-k 372 (550)
T PF00862_consen 294 DTGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVSGTENARILRVPFGPEKGILR-K 372 (550)
T ss_dssp TSSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEETTESSEEEEEE-ESESTEEE--S
T ss_pred CCCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccCCCCCcEEEEecCCCCcchhh-h
Confidence 367777778888888864 354 4667662 11 10 01112345556666433221100 1
Q ss_pred CCchhhHHHHHHHHHHHHHhhccCCCccCCcccCcCEEEeCCcc--hhHHHHHHHcCCCEEEee
Q 013835 62 PSEIPVQRNQMKEIIYSLLPACRDPDLDSGIAFKADAIIANPPA--YGHVHVAEALKIPIHIFF 123 (435)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVi~d~~~--~~~~~~A~~~~iP~v~~~ 123 (435)
...-...++.+.++...........+ .-+||+|+..+.. ..|.++|+++|||...+.
T Consensus 373 wisrf~lWPyLe~fa~d~~~~i~~e~-----~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~ia 431 (550)
T PF00862_consen 373 WISRFDLWPYLEEFADDAEREILAEL-----QGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIA 431 (550)
T ss_dssp ---GGG-GGGHHHHHHHHHHHHHHHH-----TS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-
T ss_pred ccchhhchhhHHHHHHHHHHHHHHHh-----CCCCcEEEeccCcchHHHHHHHhhcCCceehhh
Confidence 11111234444444433322221111 2389999986432 346789999999998874
No 247
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=56.94 E-value=1e+02 Score=30.12 Aligned_cols=30 Identities=23% Similarity=0.197 Sum_probs=23.8
Q ss_pred CcccCcCEEEeCCcchhHHHHHHHcCCCEEEee
Q 013835 91 GIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 123 (435)
Q Consensus 91 ~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~ 123 (435)
+++.+||++|..+.. ..+|+++|+|++.+.
T Consensus 373 i~~~~pDliiG~s~~---~~~a~~~gip~v~~~ 402 (435)
T cd01974 373 LFTEPVDLLIGNTYG---KYIARDTDIPLVRFG 402 (435)
T ss_pred HhhcCCCEEEECccH---HHHHHHhCCCEEEee
Confidence 445589999998753 679999999998754
No 248
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=56.86 E-value=23 Score=34.79 Aligned_cols=54 Identities=17% Similarity=0.280 Sum_probs=40.4
Q ss_pred cccccEEEEeCCchHHHHHHHh----CCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC
Q 013835 304 FLQCKAVVHHGGAGTTAAGLRA----ACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD 374 (435)
Q Consensus 304 l~~~~l~I~hgG~~s~~Eal~~----G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll~ 374 (435)
...+|++|+=||-||++.|... ++|++.+.. ..+|. + .+.+.+++.++|..+++
T Consensus 260 ~~~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN~-------------G~LGF--L--t~i~~~e~~~~Le~il~ 317 (508)
T PLN02935 260 HTKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSM-------------GSLGF--M--TPFHSEQYRDCLDAILK 317 (508)
T ss_pred ccCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeC-------------CCcce--e--cccCHHHHHHHHHHHHc
Confidence 4579999999999999999774 568886631 12553 2 34468999999999883
No 249
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=56.73 E-value=1.2e+02 Score=25.65 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=32.5
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEe----C-CCc-HHHHHh-cCceeEEcc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLAT----H-SNF-KDFVLT-AGLEFYPLD 50 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~----~-~~~-~~~~~~-~g~~~~~i~ 50 (435)
.+.++.|=....+.+|-+...+|++|.++- . ... ...++. .++.+...+
T Consensus 28 ~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g 83 (191)
T PRK05986 28 HTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMG 83 (191)
T ss_pred ECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECC
Confidence 345677777778888888888999999983 2 111 223333 478888776
No 250
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=56.51 E-value=55 Score=30.57 Aligned_cols=87 Identities=16% Similarity=0.102 Sum_probs=58.5
Q ss_pred ceEEcCCCChhhh-cccccEEEEeC---Cch-HHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHH
Q 013835 291 SIYLLDNIPHDWL-FLQCKAVVHHG---GAG-TTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKL 365 (435)
Q Consensus 291 ~v~~~~~~p~~~~-l~~~~l~I~hg---G~~-s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l 365 (435)
..++.+-.+..+. -..+|+||||= |.| .-.|+|+.|-|+| +|+..+.+ +|. .- ++.+..+=
T Consensus 254 kasfegR~~~p~fla~~tD~VvSHqWeN~lNYlY~daLyggYPLV---------HNS~~l~d--~GY-YY--~~fD~~~G 319 (364)
T PF10933_consen 254 KASFEGRFDFPDFLAQHTDAVVSHQWENPLNYLYYDALYGGYPLV---------HNSPLLKD--VGY-YY--PDFDAFEG 319 (364)
T ss_pred eeEEeeecChHHHHHhCCCEEEeccccchhhHHHHHHHhcCCCcc---------cCcchhcc--cCc-CC--CCccHHHH
Confidence 4444554444444 47799999995 433 4579999999999 78888886 774 43 44455555
Q ss_pred HHHHHHhc---C---HHHHHHHHHHHHHhhcc
Q 013835 366 INAINFML---D---PKVKERAVELAEAMEKE 391 (435)
Q Consensus 366 ~~~i~~ll---~---~~~~~~~~~~~~~~~~~ 391 (435)
++++.+.+ | ++|+++++++-.++...
T Consensus 320 ~r~L~~A~~~HD~~~~~Y~~ra~~~l~~~~p~ 351 (364)
T PF10933_consen 320 ARQLLRAIREHDADLDAYRARARRLLDRLSPE 351 (364)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhhCCC
Confidence 55554444 2 78999988877776543
No 251
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=56.35 E-value=54 Score=29.31 Aligned_cols=30 Identities=23% Similarity=0.155 Sum_probs=22.3
Q ss_pred CcCEEEeCCcc------hhHHHHHHHcCCCEEEeec
Q 013835 95 KADAIIANPPA------YGHVHVAEALKIPIHIFFT 124 (435)
Q Consensus 95 ~pDlVi~d~~~------~~~~~~A~~~~iP~v~~~~ 124 (435)
.||+|++...+ .-+..+|+.+|+|+++...
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEE
Confidence 69999985222 2346899999999987643
No 252
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.06 E-value=35 Score=30.65 Aligned_cols=54 Identities=20% Similarity=0.283 Sum_probs=40.2
Q ss_pred ccccEEEEeCCchHHHHHHHh-----CCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC
Q 013835 305 LQCKAVVHHGGAGTTAAGLRA-----ACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLD 374 (435)
Q Consensus 305 ~~~~l~I~hgG~~s~~Eal~~-----G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll~ 374 (435)
..+|++|+=||=||++.|+.. .+|++.+...+ .+|. + .+.+.+++.+++..+++
T Consensus 38 ~~~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G------------~lGF--L--~~~~~~~~~~~l~~i~~ 96 (264)
T PRK03501 38 KNANIIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD------------QLGF--Y--CDFHIDDLDKMIQAITK 96 (264)
T ss_pred CCccEEEEECCcHHHHHHHHHhcccCCCeEEeEecCC------------CCeE--c--ccCCHHHHHHHHHHHHc
Confidence 457999999999999999874 56877666411 3553 3 34567899999988873
No 253
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=55.94 E-value=61 Score=31.49 Aligned_cols=48 Identities=15% Similarity=0.258 Sum_probs=35.2
Q ss_pred cccCCccchhHHHHHHHHHH-HCCCeEEEEeCCCcHH--------HHHhcCceeEEc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQ-DYGHRVRLATHSNFKD--------FVLTAGLEFYPL 49 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~-~rGh~V~~~~~~~~~~--------~~~~~g~~~~~i 49 (435)
+..+|.|=...+..||..|. ++|.+|.+++.+.++. .....|++++..
T Consensus 105 vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~ 161 (428)
T TIGR00959 105 VGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFAL 161 (428)
T ss_pred ECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEec
Confidence 45678889999999999997 6899999998765433 223456666554
No 254
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=55.06 E-value=98 Score=30.10 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=26.2
Q ss_pred hcccccEEEEeCCch-----------HHHHHHHhCCCEEeecCC
Q 013835 303 LFLQCKAVVHHGGAG-----------TTAAGLRAACPTTIVPFF 335 (435)
Q Consensus 303 ~l~~~~l~I~hgG~~-----------s~~Eal~~G~P~l~~P~~ 335 (435)
.++++|++|.-||.. -+.-|...|+|++++++.
T Consensus 114 ~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqs 157 (426)
T PRK10017 114 LLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHS 157 (426)
T ss_pred HHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCc
Confidence 389999999988852 134568899999999875
No 255
>PRK05973 replicative DNA helicase; Provisional
Probab=55.04 E-value=67 Score=28.34 Aligned_cols=34 Identities=9% Similarity=-0.065 Sum_probs=27.7
Q ss_pred ccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcH
Q 013835 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFK 36 (435)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~ 36 (435)
.-||.|=..-++.++....++|..|.|++.+.-.
T Consensus 71 G~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~ 104 (237)
T PRK05973 71 ARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTE 104 (237)
T ss_pred eCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCH
Confidence 4578888888999999888889999999866543
No 256
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=55.01 E-value=76 Score=30.83 Aligned_cols=29 Identities=31% Similarity=0.504 Sum_probs=22.9
Q ss_pred cccCcCEEEeCCcchhHHHHHHHcCCCEEEee
Q 013835 92 IAFKADAIIANPPAYGHVHVAEALKIPIHIFF 123 (435)
Q Consensus 92 ~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~ 123 (435)
++.+||++|..+.. ..+|+++|||.+-+.
T Consensus 352 ~~~~pDllig~s~~---~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 352 LEFEPDLAIGTTPL---VQFAKEHGIPALYFT 380 (422)
T ss_pred hhCCCCEEEcCCcc---hHHHHHcCCCEEEec
Confidence 34599999998543 468999999998864
No 257
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=54.81 E-value=10 Score=29.80 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=30.2
Q ss_pred CCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHhcC
Q 013835 5 GTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAG 43 (435)
Q Consensus 5 ~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~~g 43 (435)
.|.++..-...+.++|.++|++|.++.++...+.+....
T Consensus 8 tGs~~~~~~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~~ 46 (129)
T PF02441_consen 8 TGSIAAYKAPDLLRRLKRAGWEVRVVLSPSAERFVTPEG 46 (129)
T ss_dssp -SSGGGGGHHHHHHHHHTTTSEEEEEESHHHHHHSHHHG
T ss_pred ECHHHHHHHHHHHHHHhhCCCEEEEEECCcHHHHhhhhc
Confidence 345566669999999999999999998877766665554
No 258
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=54.25 E-value=18 Score=29.11 Aligned_cols=37 Identities=27% Similarity=0.304 Sum_probs=29.3
Q ss_pred HHHHHHHHHCCCeEEEEeCCCcHHHHHhcCceeEEcc
Q 013835 14 VAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLD 50 (435)
Q Consensus 14 ~~la~~L~~rGh~V~~~~~~~~~~~~~~~g~~~~~i~ 50 (435)
.-+|..|.+.||+|++++.....+.+.+.|+.+....
T Consensus 11 ~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~ 47 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPD 47 (151)
T ss_dssp HHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETT
T ss_pred HHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecc
Confidence 3468899999999999998774456788888877654
No 259
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=54.23 E-value=1.2e+02 Score=28.92 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=59.7
Q ss_pred CceEEcCCCCh-hh---hcccccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHH
Q 013835 290 DSIYLLDNIPH-DW---LFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKL 365 (435)
Q Consensus 290 ~~v~~~~~~p~-~~---~l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l 365 (435)
+++.+.. .++ .. ++++++++|.-==+ ++.-|++.|+|.+++-. |..+...++..|+--..++..+++.+.+
T Consensus 266 ~~i~~~~-d~~~~~~~~~l~~~dl~Vg~R~H-saI~al~~g~p~i~i~Y---~~K~~~l~~~~gl~~~~~~i~~~~~~~l 340 (385)
T COG2327 266 AEILVSS-DEYAEELGGILAACDLIVGMRLH-SAIMALAFGVPAIAIAY---DPKVRGLMQDLGLPGFAIDIDPLDAEIL 340 (385)
T ss_pred cceEeec-chHHHHHHHHhccCceEEeehhH-HHHHHHhcCCCeEEEee---cHHHHHHHHHcCCCcccccCCCCchHHH
Confidence 5665544 233 22 38999998865444 78889999999998865 3344567777775522466677888999
Q ss_pred HHHHHHhc--CHHHHHH
Q 013835 366 INAINFML--DPKVKER 380 (435)
Q Consensus 366 ~~~i~~ll--~~~~~~~ 380 (435)
.+.+.+.+ +++.+++
T Consensus 341 ~~~~~e~~~~~~~~~~~ 357 (385)
T COG2327 341 SAVVLERLTKLDELRER 357 (385)
T ss_pred HHHHHHHHhccHHHHhh
Confidence 99998776 5776666
No 260
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=54.03 E-value=20 Score=27.80 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=26.0
Q ss_pred hcccccEEEEeCC-----chHHHHH---HHhCCCEEeec
Q 013835 303 LFLQCKAVVHHGG-----AGTTAAG---LRAACPTTIVP 333 (435)
Q Consensus 303 ~l~~~~l~I~hgG-----~~s~~Ea---l~~G~P~l~~P 333 (435)
++.+||++|-.=| ||+.+.| ++.|+|+|++-
T Consensus 69 li~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~lh 107 (141)
T PF11071_consen 69 LIEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITLH 107 (141)
T ss_pred HHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEec
Confidence 4899999999998 6887654 88999999874
No 261
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=53.90 E-value=83 Score=30.47 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=22.6
Q ss_pred ccCcCEEEeCCcchhHHHHHHHcCCCEEEee
Q 013835 93 AFKADAIIANPPAYGHVHVAEALKIPIHIFF 123 (435)
Q Consensus 93 ~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~ 123 (435)
+.+||++|..+. +..+|+++|||.+.+.
T Consensus 348 ~~~pDl~Ig~s~---~~~~a~~~giP~~r~~ 375 (416)
T cd01980 348 EYRPDLAIGTTP---LVQYAKEKGIPALYYT 375 (416)
T ss_pred hcCCCEEEeCCh---hhHHHHHhCCCEEEec
Confidence 449999999844 3579999999998754
No 262
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=53.75 E-value=58 Score=31.87 Aligned_cols=72 Identities=15% Similarity=0.130 Sum_probs=43.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCCC-c--HHHHHhcCceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHHHhhccCCCcc
Q 013835 13 FVAIGKRLQDYGHRVRLATHSN-F--KDFVLTAGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLLPACRDPDLD 89 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~-~--~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (435)
|.+||+.|.++|++|+..=... . .+.++..|+.+..-. . . ...
T Consensus 12 m~~la~~l~~~G~~V~~~D~~~~~~~~~~l~~~gi~~~~~~-------------~-----~------~~~---------- 57 (448)
T TIGR01081 12 MGGLAMIAKQLGHEVTGSDANVYPPMSTQLEAQGIEIIEGF-------------D-----A------AQL---------- 57 (448)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEeCCC-------------C-----H------HHC----------
Confidence 8899999999999998752111 1 112334455443211 0 0 000
Q ss_pred CCcccCcCEEEeCCcc---hhHHHHHHHcCCCEEE
Q 013835 90 SGIAFKADAIIANPPA---YGHVHVAEALKIPIHI 121 (435)
Q Consensus 90 ~~~~~~pDlVi~d~~~---~~~~~~A~~~~iP~v~ 121 (435)
. ..+|+||..+.. ...+..|+..|||++.
T Consensus 58 -~--~~~d~vV~SpgI~~~~~~~~~a~~~~i~v~~ 89 (448)
T TIGR01081 58 -E--PKPDLVVIGNAMKRGNPCVEAVLNLNLPYTS 89 (448)
T ss_pred -C--CCCCEEEECCCCCCCCHHHHHHHHCCCCEEe
Confidence 0 047999987433 2446788999999986
No 263
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=53.67 E-value=72 Score=30.08 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=25.2
Q ss_pred ccccEEEEeCCchH---HHHHHHhCCCEEeec
Q 013835 305 LQCKAVVHHGGAGT---TAAGLRAACPTTIVP 333 (435)
Q Consensus 305 ~~~~l~I~hgG~~s---~~Eal~~G~P~l~~P 333 (435)
-+-|++|++||+-| +.-|...|+|+++.-
T Consensus 90 ~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e 121 (352)
T PRK12446 90 LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHE 121 (352)
T ss_pred cCCCEEEecCchhhHHHHHHHHHcCCCEEEEC
Confidence 56789999999975 999999999999753
No 264
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=53.63 E-value=17 Score=28.84 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=39.7
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCC----CcHHHHHhcCceeEEcc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHS----NFKDFVLTAGLEFYPLD 50 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~----~~~~~~~~~g~~~~~i~ 50 (435)
.+.++-+|-.-..-++..|.++|++|+++... ++.+.+.+.+.+++.+.
T Consensus 9 ~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS 61 (137)
T PRK02261 9 GVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVS 61 (137)
T ss_pred EeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 46788899999999999999999999999643 45556667788888775
No 265
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=53.63 E-value=15 Score=31.05 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=24.9
Q ss_pred ccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHhcCceeEEcc
Q 013835 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLD 50 (435)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~~g~~~~~i~ 50 (435)
+..+.|.. -.+||+++..+|++|++++.+.... ...++..+.+.
T Consensus 24 tN~SSG~~--G~~lA~~~~~~Ga~V~li~g~~~~~--~p~~~~~i~v~ 67 (185)
T PF04127_consen 24 TNRSSGKM--GAALAEEAARRGAEVTLIHGPSSLP--PPPGVKVIRVE 67 (185)
T ss_dssp EES--SHH--HHHHHHHHHHTT-EEEEEE-TTS------TTEEEEE-S
T ss_pred cCCCcCHH--HHHHHHHHHHCCCEEEEEecCcccc--ccccceEEEec
Confidence 33444433 4678999999999999998764211 24466666654
No 266
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=53.61 E-value=1e+02 Score=23.88 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=18.5
Q ss_pred HHHHHHHHHHCCCeEEEEeCCC
Q 013835 13 FVAIGKRLQDYGHRVRLATHSN 34 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~ 34 (435)
+..+.+.|+++|+.+.++|...
T Consensus 30 v~~~l~~L~~~g~~l~i~Sn~~ 51 (132)
T TIGR01662 30 VPDALAELKEAGYKVVIVTNQS 51 (132)
T ss_pred HHHHHHHHHHCCCEEEEEECCc
Confidence 5667888999999999998755
No 267
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=53.39 E-value=22 Score=29.53 Aligned_cols=46 Identities=33% Similarity=0.368 Sum_probs=32.3
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHhcCceeEEcc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLD 50 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~~g~~~~~i~ 50 (435)
+-+|+.|++- ..++++|.++||+|+.++.......- ..+++.+...
T Consensus 2 ~V~GatG~vG--~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d 47 (183)
T PF13460_consen 2 LVFGATGFVG--RALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGD 47 (183)
T ss_dssp EEETTTSHHH--HHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESC
T ss_pred EEECCCChHH--HHHHHHHHHCCCEEEEEecCchhccc-ccccccceee
Confidence 3456667665 45899999999999999976432211 6677777664
No 268
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=51.64 E-value=1.3e+02 Score=30.19 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=24.3
Q ss_pred CCcccCcCEEEeCCcchhHHHHHHHcCCCEEEee
Q 013835 90 SGIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 123 (435)
Q Consensus 90 ~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~ 123 (435)
.+++.+||+|+.++.. ..+|+++|||++.+.
T Consensus 357 ~i~~~~PdliiG~~~e---r~~a~~lgiP~~~i~ 387 (519)
T PRK02910 357 AIAEAAPELVLGTQME---RHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHhcCCCEEEEcchH---HHHHHHcCCCEEEec
Confidence 3455699999988633 678999999998764
No 269
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.54 E-value=1.1e+02 Score=29.94 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=17.5
Q ss_pred HHHHHHHHHCCCeEEEEeCC
Q 013835 14 VAIGKRLQDYGHRVRLATHS 33 (435)
Q Consensus 14 ~~la~~L~~rGh~V~~~~~~ 33 (435)
+++|+.|.++|++|++....
T Consensus 18 ~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 18 LALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred HHHHHHHHHCCCEEEEEeCC
Confidence 48999999999999998654
No 270
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=51.07 E-value=12 Score=34.03 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=26.0
Q ss_pred cccccEEEEeCCchHHHHHHH----hCCCEEeec
Q 013835 304 FLQCKAVVHHGGAGTTAAGLR----AACPTTIVP 333 (435)
Q Consensus 304 l~~~~l~I~hgG~~s~~Eal~----~G~P~l~~P 333 (435)
++.||++|+-||-||++-|.. --+|+|++-
T Consensus 103 i~waD~VisvGGDGTfL~Aasrv~~~~~PViGvN 136 (395)
T KOG4180|consen 103 IRWADMVISVGGDGTFLLAASRVIDDSKPVIGVN 136 (395)
T ss_pred CchhhEEEEecCccceeehhhhhhccCCceeeec
Confidence 588999999999999988766 579999983
No 271
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=50.86 E-value=1.2e+02 Score=29.21 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=42.8
Q ss_pred cccccEEE-EeCCchHH-------------HHHHHhCCCEEeecCCC----C---hhhHHHHHHHcCCCCCCCCC-----
Q 013835 304 FLQCKAVV-HHGGAGTT-------------AAGLRAACPTTIVPFFG----D---QPFWGERVHARGVGPPPIPV----- 357 (435)
Q Consensus 304 l~~~~l~I-~hgG~~s~-------------~Eal~~G~P~l~~P~~~----d---Q~~na~~v~~~g~G~~~l~~----- 357 (435)
...+|++| ..+-+||+ .-++++++|++++|... + -..|...+.+.|+-+ +++
T Consensus 80 ~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~i--i~P~~g~l 157 (399)
T PRK05579 80 AKWADLVLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRSRGVEI--IGPASGRL 157 (399)
T ss_pred ccccCEEEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEE--ECCCCccc
Confidence 45677654 45555543 23466799999999543 2 246777777777553 444
Q ss_pred --------CCCCHHHHHHHHHHhc
Q 013835 358 --------DEFSLPKLINAINFML 373 (435)
Q Consensus 358 --------~~~~~~~l~~~i~~ll 373 (435)
.-.+++++...+.+.+
T Consensus 158 a~~~~g~gr~~~~~~I~~~~~~~~ 181 (399)
T PRK05579 158 ACGDVGPGRMAEPEEIVAAAERAL 181 (399)
T ss_pred cCCCcCCCCCCCHHHHHHHHHHHh
Confidence 1236788888887765
No 272
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=50.61 E-value=90 Score=30.04 Aligned_cols=34 Identities=9% Similarity=0.075 Sum_probs=28.7
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCCCc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF 35 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~ 35 (435)
+-.+|.|=..-+..||..|..+|++|.+++.+.+
T Consensus 247 VGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~ 280 (436)
T PRK11889 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 280 (436)
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCc
Confidence 3456888889999999999999999999987654
No 273
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=50.55 E-value=1.4e+02 Score=24.45 Aligned_cols=110 Identities=22% Similarity=0.183 Sum_probs=53.0
Q ss_pred CCccchhH-HHHHHHHHHHCCCeEEEEeCCCcHH-HHHhcCceeEEccccccCC---CCCCCCCchhhHHHHHHHHHHHH
Q 013835 5 GTRGDVQP-FVAIGKRLQDYGHRVRLATHSNFKD-FVLTAGLEFYPLDMVKNKG---FLPSGPSEIPVQRNQMKEIIYSL 79 (435)
Q Consensus 5 ~~~GH~~p-~~~la~~L~~rGh~V~~~~~~~~~~-~~~~~g~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 79 (435)
...+.+.. +..+|++|..+|++|.=+...+... --.........++...... ...++...-......+...-...
T Consensus 7 ~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~~~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD~~~La~A~~~l 86 (159)
T PF10649_consen 7 DDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGDGGRCDMDLRDLPSGRRIRISQDLGPGSRGCRLDPGALAEASAAL 86 (159)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCCccceEEEECCCCCEEEEeeccCCCCcccccCHHHHHHHHHHH
Confidence 33444444 5568999999999997776433111 1112234444443111111 11111122221122222222211
Q ss_pred HhhccCCCccCCcccCcCEEEeCCcch---------hHHHHHHHcCCCEEEee
Q 013835 80 LPACRDPDLDSGIAFKADAIIANPPAY---------GHVHVAEALKIPIHIFF 123 (435)
Q Consensus 80 ~~~~~~~~~~~~~~~~pDlVi~d~~~~---------~~~~~A~~~~iP~v~~~ 123 (435)
...+ + ..||++|.+-|.- ..+..|-..|||+++..
T Consensus 87 ~~al-~--------~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V 130 (159)
T PF10649_consen 87 RRAL-A--------EGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAV 130 (159)
T ss_pred HHHH-h--------cCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEE
Confidence 1111 1 1799999875421 23456788999998854
No 274
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=50.50 E-value=1.1e+02 Score=24.93 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=18.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCC
Q 013835 13 FVAIGKRLQDYGHRVRLATHS 33 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~ 33 (435)
+..+.+.|+++|+.+.++|..
T Consensus 34 v~e~L~~L~~~g~~l~IvSN~ 54 (161)
T TIGR01261 34 VIPALLKLKKAGYKFVMVTNQ 54 (161)
T ss_pred HHHHHHHHHHCCCeEEEEeCC
Confidence 678899999999999999874
No 275
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=49.72 E-value=1.2e+02 Score=28.81 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=23.6
Q ss_pred HHHHHHHHHCCCeEEEEeCCCc---HHHHHhcCceeEEcc
Q 013835 14 VAIGKRLQDYGHRVRLATHSNF---KDFVLTAGLEFYPLD 50 (435)
Q Consensus 14 ~~la~~L~~rGh~V~~~~~~~~---~~~~~~~g~~~~~i~ 50 (435)
..+|+.|.++||+|+++..... .+.+....+-++.+|
T Consensus 112 ~slA~~l~~~G~~V~~~d~~~~~~~~~~~~~aDlVilavP 151 (374)
T PRK11199 112 RLFAKMLTLSGYQVRILEQDDWDRAEDILADAGMVIVSVP 151 (374)
T ss_pred HHHHHHHHHCCCeEEEeCCCcchhHHHHHhcCCEEEEeCc
Confidence 3578889999999999975432 223334455555554
No 276
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=49.68 E-value=20 Score=32.60 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=27.0
Q ss_pred HHHHHHHHCCCeEEEEeCCCcHHHHHhcCceeEEc
Q 013835 15 AIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPL 49 (435)
Q Consensus 15 ~la~~L~~rGh~V~~~~~~~~~~~~~~~g~~~~~i 49 (435)
.+|..|.+.||+|++++.+...+.+...|+.+...
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i~~~Gl~i~~~ 39 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEALNQEGLRIVSL 39 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHHHHCCcEEEec
Confidence 46888999999999999864456677788876543
No 277
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=49.54 E-value=1.6e+02 Score=25.95 Aligned_cols=83 Identities=14% Similarity=0.163 Sum_probs=54.9
Q ss_pred HHHHHHcCCCcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEE
Q 013835 232 LVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVV 311 (435)
Q Consensus 232 l~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~l~I 311 (435)
+.+++...++++||-.-|.. ...+...+...++++..++.+...-.. ++ ..+.+..+|+++
T Consensus 24 ~~~~~~~~~~v~fIPtAs~~-~~~~~y~~~~~~af~~lG~~v~~l~~~----------~d--------~~~~l~~ad~I~ 84 (233)
T PRK05282 24 IAELLAGRRKAVFIPYAGVT-QSWDDYTAKVAEALAPLGIEVTGIHRV----------AD--------PVAAIENAEAIF 84 (233)
T ss_pred HHHHHcCCCeEEEECCCCCC-CCHHHHHHHHHHHHHHCCCEEEEeccc----------hh--------hHHHHhcCCEEE
Confidence 44555444568899887754 345566777889999988875543211 11 124468899888
Q ss_pred EeCCc--------------hHHHHHHHhCCCEEeec
Q 013835 312 HHGGA--------------GTTAAGLRAACPTTIVP 333 (435)
Q Consensus 312 ~hgG~--------------~s~~Eal~~G~P~l~~P 333 (435)
--||- ..+.|++..|+|++...
T Consensus 85 v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~S 120 (233)
T PRK05282 85 VGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWS 120 (233)
T ss_pred ECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEEC
Confidence 88884 23567888999988765
No 278
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=49.40 E-value=36 Score=28.62 Aligned_cols=108 Identities=8% Similarity=0.044 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHH-HCCCeEEEEeCCCcHHHHHhcCceeEEccc------------cccCCCCC--CCCCchhhHHHHHHH
Q 013835 10 VQPFVAIGKRLQ-DYGHRVRLATHSNFKDFVLTAGLEFYPLDM------------VKNKGFLP--SGPSEIPVQRNQMKE 74 (435)
Q Consensus 10 ~~p~~~la~~L~-~rGh~V~~~~~~~~~~~~~~~g~~~~~i~~------------~~~~~~~~--~~~~~~~~~~~~~~~ 74 (435)
+..+..+++.+. +.|.++.+.++.+.++.++.+.|-+..+.. +...+... ....+.-.....++.
T Consensus 41 L~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRt 120 (183)
T PF02056_consen 41 LEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRT 120 (183)
T ss_dssp HHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhh
Confidence 345667788875 468899888888888888888877777741 11122221 111111111222221
Q ss_pred HH--HHHHhhccCCCccCCcccCcCEEEeCCcchh---HHHHHHHcC-CCEEEeecc
Q 013835 75 II--YSLLPACRDPDLDSGIAFKADAIIANPPAYG---HVHVAEALK-IPIHIFFTM 125 (435)
Q Consensus 75 ~~--~~~~~~~~~~~~~~~~~~~pDlVi~d~~~~~---~~~~A~~~~-iP~v~~~~~ 125 (435)
.. .++.. .+++.-||..+..+..+. +..+.+..+ +++|.++..
T Consensus 121 ipv~~~ia~--------~i~~~~PdAw~iNytNP~~~vt~a~~r~~~~~k~vGlCh~ 169 (183)
T PF02056_consen 121 IPVMLDIAR--------DIEELCPDAWLINYTNPMGIVTEALSRYTPKIKVVGLCHG 169 (183)
T ss_dssp HHHHHHHHH--------HHHHHTTTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-SH
T ss_pred HHHHHHHHH--------HHHHhCCCcEEEeccChHHHHHHHHHHhCCCCCEEEECCC
Confidence 11 11111 133447899887644443 344556666 999999853
No 279
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=49.25 E-value=1.4e+02 Score=24.23 Aligned_cols=90 Identities=14% Similarity=0.208 Sum_probs=46.8
Q ss_pred HHHHHHHHHHC-CCeEEEEeCCC---cHHH----HHhcCce-eEEccccccCCCCCCCCCchhhHHHHHHHHHHHHHhhc
Q 013835 13 FVAIGKRLQDY-GHRVRLATHSN---FKDF----VLTAGLE-FYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLLPAC 83 (435)
Q Consensus 13 ~~~la~~L~~r-Gh~V~~~~~~~---~~~~----~~~~g~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (435)
++..|++|++. |.+|+.++-+. ..+. +...|.. .+.+....... ... ..+...+...+.
T Consensus 20 ~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~~------~~~----~~~a~~l~~~~~-- 87 (164)
T PF01012_consen 20 ALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPALAE------YDP----EAYADALAELIK-- 87 (164)
T ss_dssp HHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGGTT------C-H----HHHHHHHHHHHH--
T ss_pred HHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccccc------cCH----HHHHHHHHHHHH--
Confidence 67889999864 78888885432 3333 3336764 44443110000 011 112222222222
Q ss_pred cCCCccCCcccCcCEEEeCCcchh---HHHHHHHcCCCEEEee
Q 013835 84 RDPDLDSGIAFKADAIIANPPAYG---HVHVAEALKIPIHIFF 123 (435)
Q Consensus 84 ~~~~~~~~~~~~pDlVi~d~~~~~---~~~~A~~~~iP~v~~~ 123 (435)
+.+||+|+......+ +..+|.+++.|+++-.
T Consensus 88 ---------~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v 121 (164)
T PF01012_consen 88 ---------EEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDV 121 (164)
T ss_dssp ---------HHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEE
T ss_pred ---------hcCCCEEEEcCcCCCCcHHHHHHHHhCCCccceE
Confidence 238999998643332 3578999999998743
No 280
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=49.19 E-value=1.2e+02 Score=29.85 Aligned_cols=30 Identities=30% Similarity=0.261 Sum_probs=22.7
Q ss_pred CcccCcCEEEeCCcchhHHHHHHHcCCCEEEee
Q 013835 91 GIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 123 (435)
Q Consensus 91 ~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~ 123 (435)
+++.+||++|.+... ..+|+++|||++.+.
T Consensus 391 i~~~~pDl~ig~~~~---~~~a~k~giP~i~~~ 420 (456)
T TIGR01283 391 LLEYKADLLIAGGKE---RYTALKLGIPFCDIN 420 (456)
T ss_pred HhhcCCCEEEEccch---HHHHHhcCCCEEEcc
Confidence 455689999987443 568889999998753
No 281
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=48.56 E-value=1.1e+02 Score=28.57 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=22.1
Q ss_pred CcCEEEeCCcchhHHHHHHHcCCCEEEeec
Q 013835 95 KADAIIANPPAYGHVHVAEALKIPIHIFFT 124 (435)
Q Consensus 95 ~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~ 124 (435)
+-|++|+. ..+.+.+|...|+|+|.++.
T Consensus 260 ~a~l~Vs~--DSGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 260 HARLFIGV--DSVPMHMAAALGTPLVALFG 287 (344)
T ss_pred hCCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 55999985 24457999999999999864
No 282
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=48.38 E-value=21 Score=25.21 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=22.6
Q ss_pred cCCccchhHHHHHHHHHHHCCCeEEEE
Q 013835 4 VGTRGDVQPFVAIGKRLQDYGHRVRLA 30 (435)
Q Consensus 4 ~~~~GH~~p~~~la~~L~~rGh~V~~~ 30 (435)
-|...|...+..+|+.|.++|+.|...
T Consensus 23 HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 23 HGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 355668999999999999999988766
No 283
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.32 E-value=36 Score=34.52 Aligned_cols=55 Identities=22% Similarity=0.358 Sum_probs=41.7
Q ss_pred ccccEEEEeCCchHHHHHHHh----CCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHH
Q 013835 305 LQCKAVVHHGGAGTTAAGLRA----ACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPK 376 (435)
Q Consensus 305 ~~~~l~I~hgG~~s~~Eal~~----G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll~~~ 376 (435)
..+|++|+-||=||++.|... ++|++.+-... +|. + .+.+.+++.+.|.++++.+
T Consensus 347 ~~~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G~-------------lGF--L--~~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 347 EEISHIISIGGDGTVLRASKLVNGEEIPIICINMGT-------------VGF--L--TEFSKEEIFKAIDSIISGE 405 (569)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCCC-------------CCc--C--cccCHHHHHHHHHHHHcCC
Confidence 368999999999999999774 78999876432 553 2 2446799999999988433
No 284
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=48.27 E-value=1.4e+02 Score=23.91 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=24.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCcH---HHHHhcCce
Q 013835 13 FVAIGKRLQDYGHRVRLATHSNFK---DFVLTAGLE 45 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~~~---~~~~~~g~~ 45 (435)
+.++.+.|+++|+.+.++|..... ..++..|+.
T Consensus 82 ~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~ 117 (176)
T PF13419_consen 82 VRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD 117 (176)
T ss_dssp HHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG
T ss_pred hhhhhhhcccccceeEEeecCCcccccccccccccc
Confidence 567888999899999999876432 345556655
No 285
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=47.73 E-value=25 Score=31.11 Aligned_cols=53 Identities=23% Similarity=0.203 Sum_probs=37.6
Q ss_pred ccccEEEEeCCchHHHHHHHh----CCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013835 305 LQCKAVVHHGGAGTTAAGLRA----ACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 373 (435)
Q Consensus 305 ~~~~l~I~hgG~~s~~Eal~~----G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll 373 (435)
..+|++|+-||=||++.|+.. ++|++.+-.. .+|. ..+ ..+.+++.+.+.++.
T Consensus 24 ~~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~G-------------~lGF-L~~--~~~~~e~~~~l~~~~ 80 (246)
T PRK04761 24 EEADVIVALGGDGFMLQTLHRYMNSGKPVYGMNRG-------------SVGF-LMN--EYSEDDLLERIAAAE 80 (246)
T ss_pred ccCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCC-------------CCCc-ccC--CCCHHHHHHHHHHhh
Confidence 457999999999999988664 6898877643 2564 322 234677777777765
No 286
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=47.67 E-value=66 Score=28.08 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=17.8
Q ss_pred HHHHHHHHHCCCeEEEEeCCC
Q 013835 14 VAIGKRLQDYGHRVRLATHSN 34 (435)
Q Consensus 14 ~~la~~L~~rGh~V~~~~~~~ 34 (435)
..+|+.|.+.||+|+.+-.+.
T Consensus 13 ~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 13 RSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred HHHHHHHHhCCCceEEEEcCH
Confidence 578999999999999996543
No 287
>PRK06769 hypothetical protein; Validated
Probab=47.15 E-value=1.4e+02 Score=24.64 Aligned_cols=22 Identities=14% Similarity=-0.029 Sum_probs=18.8
Q ss_pred HHHHHHHHHHCCCeEEEEeCCC
Q 013835 13 FVAIGKRLQDYGHRVRLATHSN 34 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~ 34 (435)
+.++.+.|+++|+.+-++|...
T Consensus 33 v~e~L~~Lk~~G~~l~I~Tn~~ 54 (173)
T PRK06769 33 TKASLQKLKANHIKIFSFTNQP 54 (173)
T ss_pred HHHHHHHHHHCCCEEEEEECCc
Confidence 6778899999999999998654
No 288
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=46.60 E-value=1.3e+02 Score=26.94 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=22.7
Q ss_pred ccCcCEEEeC------CcchhHHHHHHHcCCCEEEee
Q 013835 93 AFKADAIIAN------PPAYGHVHVAEALKIPIHIFF 123 (435)
Q Consensus 93 ~~~pDlVi~d------~~~~~~~~~A~~~~iP~v~~~ 123 (435)
+.+||+|++. ....-+..+|+.+|.|.++..
T Consensus 109 ~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v 145 (260)
T COG2086 109 KIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYV 145 (260)
T ss_pred hcCCCEEEEecccccCCccchHHHHHHHhCCceeeeE
Confidence 3489999973 222235799999999998753
No 289
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=46.35 E-value=1.4e+02 Score=27.00 Aligned_cols=92 Identities=14% Similarity=0.208 Sum_probs=48.1
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHhcCceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHHHh
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLLP 81 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (435)
..+|+.|=...+..|++.|.+.|.+|.++..+... +.... |.. .......+..+.......+.
T Consensus 7 ~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~~~--y~~-------------~~~Ek~~R~~l~s~v~r~ls 69 (270)
T PF08433_consen 7 CGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDRND--YAD-------------SKKEKEARGSLKSAVERALS 69 (270)
T ss_dssp E--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTSS--S---------------GGGHHHHHHHHHHHHHHHHT
T ss_pred EcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cchhh--hhc-------------hhhhHHHHHHHHHHHHHhhc
Confidence 35789999999999999999999999999854332 11111 110 01112222222222222211
Q ss_pred hccCCCccCCcccCcCEEEeCCcch------hHHHHHHHcCCCEEEee
Q 013835 82 ACRDPDLDSGIAFKADAIIANPPAY------GHVHVAEALKIPIHIFF 123 (435)
Q Consensus 82 ~~~~~~~~~~~~~~pDlVi~d~~~~------~~~~~A~~~~iP~v~~~ 123 (435)
+-++||.|...+ --+.+|+..+.++..++
T Consensus 70 -------------~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~ 104 (270)
T PF08433_consen 70 -------------KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIY 104 (270)
T ss_dssp -------------T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEE
T ss_pred -------------cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEE
Confidence 238999985443 24679999999988765
No 290
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=46.21 E-value=1e+02 Score=25.24 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=27.9
Q ss_pred ccCCccchhHHHHHHHHHHHCCCeEEEEeCCCc
Q 013835 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF 35 (435)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~ 35 (435)
..++.|=...+..+|..+.++|.+|.++..+..
T Consensus 7 G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 7 GLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 457888889999999999999999999976543
No 291
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=46.01 E-value=99 Score=25.52 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=22.2
Q ss_pred HHHHHHHHHHCCCeEEEEeCCC-cHHHHHhcCc
Q 013835 13 FVAIGKRLQDYGHRVRLATHSN-FKDFVLTAGL 44 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~-~~~~~~~~g~ 44 (435)
+..+.+.|+++|+.+.++|... ....++..|+
T Consensus 92 ~~~~L~~L~~~g~~~~i~s~~~~~~~~l~~~~l 124 (185)
T TIGR01990 92 IKNLLDDLKKNNIKIALASASKNAPTVLEKLGL 124 (185)
T ss_pred HHHHHHHHHHCCCeEEEEeCCccHHHHHHhcCc
Confidence 5677888999999999998543 2334455553
No 292
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=45.94 E-value=54 Score=27.37 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=19.9
Q ss_pred cccCCccchhHHHHHHHHHHHCC
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYG 24 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rG 24 (435)
+-.|+.||..=|+.|-+.|.++=
T Consensus 43 VvlGSGGHT~EMlrLl~~l~~~y 65 (211)
T KOG3339|consen 43 VVLGSGGHTGEMLRLLEALQDLY 65 (211)
T ss_pred EEEcCCCcHHHHHHHHHHHHhhc
Confidence 45799999999999999997763
No 293
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=45.91 E-value=23 Score=30.13 Aligned_cols=35 Identities=11% Similarity=-0.000 Sum_probs=26.3
Q ss_pred cCCccchhH-HHHHHHHHHHCCCeEEEEeCCCcHHH
Q 013835 4 VGTRGDVQP-FVAIGKRLQDYGHRVRLATHSNFKDF 38 (435)
Q Consensus 4 ~~~~GH~~p-~~~la~~L~~rGh~V~~~~~~~~~~~ 38 (435)
..|.....- ...+++.|.++||+|.++.++...+.
T Consensus 12 VTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~ 47 (196)
T PRK08305 12 LTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTT 47 (196)
T ss_pred EcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHH
Confidence 344455566 68999999999999999987665443
No 294
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=45.71 E-value=1.2e+02 Score=26.00 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=24.6
Q ss_pred CcCEEEe-CCcc-hhHHHHHHHcCCCEEEeeccCC
Q 013835 95 KADAIIA-NPPA-YGHVHVAEALKIPIHIFFTMPW 127 (435)
Q Consensus 95 ~pDlVi~-d~~~-~~~~~~A~~~~iP~v~~~~~~~ 127 (435)
.||+||. |+.. .-+..=|.++|||+|.+.-+..
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~ 148 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDN 148 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCC
Confidence 7999975 6433 3457789999999999875433
No 295
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=45.57 E-value=1.2e+02 Score=26.95 Aligned_cols=32 Identities=16% Similarity=0.301 Sum_probs=24.0
Q ss_pred CcCEEEe-CCcc-hhHHHHHHHcCCCEEEeeccC
Q 013835 95 KADAIIA-NPPA-YGHVHVAEALKIPIHIFFTMP 126 (435)
Q Consensus 95 ~pDlVi~-d~~~-~~~~~~A~~~~iP~v~~~~~~ 126 (435)
.||+||+ |+.. .-++.=|.+.|||+|.++-+.
T Consensus 118 ~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~DTd 151 (249)
T PTZ00254 118 EPRLLIVTDPRTDHQAIREASYVNIPVIALCDTD 151 (249)
T ss_pred CCCEEEEeCCCcchHHHHHHHHhCCCEEEEecCC
Confidence 7999875 6543 345778999999999997543
No 296
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=45.56 E-value=1.9e+02 Score=24.51 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=26.0
Q ss_pred ccCCccchhHHHHHHHHHHHCCCeEEEEe---CC--CcH-HHHHh--cCceeEEcc
Q 013835 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLAT---HS--NFK-DFVLT--AGLEFYPLD 50 (435)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~V~~~~---~~--~~~-~~~~~--~g~~~~~i~ 50 (435)
+..+.|-..-.+.+|-+..-+|.+|.++- .. ... ..+.. .+++|+.++
T Consensus 35 TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~ 90 (198)
T COG2109 35 TGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMG 90 (198)
T ss_pred ecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhhccceeEEecC
Confidence 45566665555555555555677887773 11 111 22233 457777776
No 297
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=45.53 E-value=1.7e+02 Score=24.50 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=50.3
Q ss_pred HHHHHHcCCCcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCC--CCCCCCCCCCceEEcCC-CChhhh-cccc
Q 013835 232 LVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWG--GLGNLAEPKDSIYLLDN-IPHDWL-FLQC 307 (435)
Q Consensus 232 l~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~--~~~~~~~~~~~v~~~~~-~p~~~~-l~~~ 307 (435)
+-+++. ++...+|+.|+.. .+...+.++..+.+-+++=..... ..+...+..+..+.++. -....+ +..+
T Consensus 24 lG~~la-~~g~~lV~GGg~~-----GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~i~~~~~~~Rk~~m~~~s 97 (178)
T TIGR00730 24 LGAYLA-GQGWGLVYGGGRV-----GLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTELIEVNGMHERKAMMAELA 97 (178)
T ss_pred HHHHHH-HCCCEEEECCChH-----hHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCceEEECCHHHHHHHHHHhC
Confidence 445553 3457777776421 133445666655555554222111 11111122233334443 333444 6778
Q ss_pred cEEEE-eCCchHHHHHHH---------hCCCEEeec
Q 013835 308 KAVVH-HGGAGTTAAGLR---------AACPTTIVP 333 (435)
Q Consensus 308 ~l~I~-hgG~~s~~Eal~---------~G~P~l~~P 333 (435)
|.||. .||.||+-|.+. +.+|++++-
T Consensus 98 da~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n 133 (178)
T TIGR00730 98 DAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFN 133 (178)
T ss_pred CEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 87765 566899888743 499999884
No 298
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=45.36 E-value=1.4e+02 Score=26.48 Aligned_cols=81 Identities=15% Similarity=0.048 Sum_probs=45.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCcHHHHHhcCceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHHHhhccCCCccCCc
Q 013835 13 FVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLLPACRDPDLDSGI 92 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (435)
...||+.|.++|++|++-+...... ....+.+.+.-. ..+ ...+..++.
T Consensus 14 gr~la~~L~~~g~~v~~Svat~~g~-~~~~~~~v~~G~-----------l~~----~~~l~~~l~--------------- 62 (248)
T PRK08057 14 ARALARALAAAGVDIVLSLAGRTGG-PADLPGPVRVGG-----------FGG----AEGLAAYLR--------------- 62 (248)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCCC-cccCCceEEECC-----------CCC----HHHHHHHHH---------------
Confidence 3578889988999888775443222 222233322211 001 123333332
Q ss_pred ccCcCEEE--eCCcch----hHHHHHHHcCCCEEEeec
Q 013835 93 AFKADAII--ANPPAY----GHVHVAEALKIPIHIFFT 124 (435)
Q Consensus 93 ~~~pDlVi--~d~~~~----~~~~~A~~~~iP~v~~~~ 124 (435)
+.+.++|| ++|++. -+..+++.+|||++-+-.
T Consensus 63 ~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 63 EEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred HCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 23889887 345443 246789999999998754
No 299
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=45.18 E-value=62 Score=29.32 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=11.9
Q ss_pred HHHHHHHcCCCEEEeec
Q 013835 108 HVHVAEALKIPIHIFFT 124 (435)
Q Consensus 108 ~~~~A~~~~iP~v~~~~ 124 (435)
..++|+.+++|++.++.
T Consensus 202 ~a~~Ak~~~vPv~v~~~ 218 (282)
T PF01008_consen 202 LALAAKEFNVPVYVLAE 218 (282)
T ss_dssp HHHHHHHTT-EEEEE--
T ss_pred HHHHHHhhCCCEEEEcc
Confidence 35789999999999854
No 300
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=45.16 E-value=79 Score=26.15 Aligned_cols=36 Identities=31% Similarity=0.402 Sum_probs=24.6
Q ss_pred chhH-HHHHHHHHHHCCCeEEEEeCCC-cHHHHHhcCc
Q 013835 9 DVQP-FVAIGKRLQDYGHRVRLATHSN-FKDFVLTAGL 44 (435)
Q Consensus 9 H~~p-~~~la~~L~~rGh~V~~~~~~~-~~~~~~~~g~ 44 (435)
+.+| +..+.+.|+++|+.+.++|... ....++..|+
T Consensus 88 ~~~~g~~~~l~~l~~~g~~i~i~S~~~~~~~~l~~~~l 125 (185)
T TIGR02009 88 EVLPGIENFLKRLKKKGIAVGLGSSSKNADRILAKLGL 125 (185)
T ss_pred CCCcCHHHHHHHHHHcCCeEEEEeCchhHHHHHHHcCh
Confidence 4555 6778889999999999888652 2333445554
No 301
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=45.12 E-value=1.9e+02 Score=24.33 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=20.1
Q ss_pred HHh--CCCEEeecCCC----Ch---hhHHHHHHHcCCC
Q 013835 323 LRA--ACPTTIVPFFG----DQ---PFWGERVHARGVG 351 (435)
Q Consensus 323 l~~--G~P~l~~P~~~----dQ---~~na~~v~~~g~G 351 (435)
++. ++|++++|... +. ..|-..+.+.|+=
T Consensus 108 ~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ 145 (182)
T PRK07313 108 LALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQ 145 (182)
T ss_pred HHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCE
Confidence 455 89999999632 22 4677777777754
No 302
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=45.10 E-value=32 Score=30.05 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=19.0
Q ss_pred chhHHHHHHHHHHHCCCeEEEEeCC
Q 013835 9 DVQPFVAIGKRLQDYGHRVRLATHS 33 (435)
Q Consensus 9 H~~p~~~la~~L~~rGh~V~~~~~~ 33 (435)
|..-|...|++|.++|++|+++..+
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5677899999999999999999765
No 303
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=45.04 E-value=1.3e+02 Score=26.99 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCCc
Q 013835 12 PFVAIGKRLQDYGHRVRLATHSNF 35 (435)
Q Consensus 12 p~~~la~~L~~rGh~V~~~~~~~~ 35 (435)
-+..+++.|.++|++|.++..++-
T Consensus 141 ~~~~l~~~l~~~~~~ivl~g~~~e 164 (279)
T cd03789 141 RFAALADRLLARGARVVLTGGPAE 164 (279)
T ss_pred HHHHHHHHHHHCCCEEEEEechhh
Confidence 478899999988999988876543
No 304
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=44.47 E-value=98 Score=30.44 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=19.8
Q ss_pred CcCEEEeCCcc---hhHHHHHHHcCCCEEEe
Q 013835 95 KADAIIANPPA---YGHVHVAEALKIPIHIF 122 (435)
Q Consensus 95 ~pDlVi~d~~~---~~~~~~A~~~~iP~v~~ 122 (435)
++|+||..+-. ...+..|+..|+|++.-
T Consensus 66 ~~d~vv~spgi~~~~~~~~~a~~~~i~i~~~ 96 (461)
T PRK00421 66 DADVVVYSSAIPDDNPELVAARELGIPVVRR 96 (461)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCcEEeH
Confidence 57888887433 23467788899999763
No 305
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=44.46 E-value=1.2e+02 Score=25.75 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=24.5
Q ss_pred CcCEEEe-CCcc-hhHHHHHHHcCCCEEEeeccCC
Q 013835 95 KADAIIA-NPPA-YGHVHVAEALKIPIHIFFTMPW 127 (435)
Q Consensus 95 ~pDlVi~-d~~~-~~~~~~A~~~~iP~v~~~~~~~ 127 (435)
.||+||. |+.. .-+..=|.++|||+|.+.-+..
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~ 142 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDTDN 142 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCC
Confidence 7999975 6433 3457789999999999875443
No 306
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=43.85 E-value=1.1e+02 Score=29.82 Aligned_cols=34 Identities=12% Similarity=0.269 Sum_probs=29.0
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCCCc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF 35 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~ 35 (435)
+..+|.|=...+..||..|.+.|++|.+++.+.+
T Consensus 101 vG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 101 VGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 4457888889999999999999999999987654
No 307
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=43.77 E-value=1.7e+02 Score=23.35 Aligned_cols=22 Identities=23% Similarity=0.141 Sum_probs=18.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCCC
Q 013835 13 FVAIGKRLQDYGHRVRLATHSN 34 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~ 34 (435)
+..+.+.|+++|+.+.++|...
T Consensus 32 ~~~~l~~Lk~~g~~~~I~Sn~~ 53 (147)
T TIGR01656 32 AVPALLTLRAAGYTVVVVTNQS 53 (147)
T ss_pred hHHHHHHHHHCCCEEEEEeCCC
Confidence 5678999999999999998654
No 308
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=42.92 E-value=2.5e+02 Score=26.32 Aligned_cols=91 Identities=18% Similarity=0.223 Sum_probs=50.2
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCc--------HHHHHhcCceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHHHhhcc
Q 013835 13 FVAIGKRLQDYGHRVRLATHSNF--------KDFVLTAGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLLPACR 84 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~~--------~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (435)
...+++.+.+.|-+|.+++.+.. .+.+++.|+.+..+.. .. ..+ .. ....+..+.
T Consensus 11 ~~~l~~~~~~~~~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~-----~~-~~p-~~----~~v~~~~~~------ 73 (345)
T cd08171 11 YKKIPEVCEKYGKKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIW-----YG-GES-TY----ENVERLKKN------ 73 (345)
T ss_pred HHHHHHHHHhcCCEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEe-----cC-CCC-CH----HHHHHHHHH------
Confidence 45677777777888888886532 2233456776654420 00 111 11 122222111
Q ss_pred CCCccCCcccCcCEEEe---CCcchhHHHHHHHcCCCEEEeeccC
Q 013835 85 DPDLDSGIAFKADAIIA---NPPAYGHVHVAEALKIPIHIFFTMP 126 (435)
Q Consensus 85 ~~~~~~~~~~~pDlVi~---d~~~~~~~~~A~~~~iP~v~~~~~~ 126 (435)
.++.++|+||. ....=.+..+|..+++|+|.+-+++
T Consensus 74 ------~~~~~~d~iiavGGGs~~D~aK~ia~~~~~p~i~VPTt~ 112 (345)
T cd08171 74 ------PAVQEADMIFAVGGGKAIDTVKVLADKLGKPVFTFPTIA 112 (345)
T ss_pred ------HhhcCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEecCcc
Confidence 12348999996 2333334667777899999986654
No 309
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=42.76 E-value=23 Score=27.84 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCCcHHHHHhcC
Q 013835 11 QPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAG 43 (435)
Q Consensus 11 ~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~~g 43 (435)
.-.+-++..|+++||+|++.+.+.....++.+.
T Consensus 14 p~alYl~~~Lk~~G~~v~Va~npAA~kLl~vaD 46 (139)
T PF09001_consen 14 PSALYLSYKLKKKGFEVVVAGNPAALKLLEVAD 46 (139)
T ss_dssp HHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCeEEEecCHHHHhHhhhcC
Confidence 346778999999999999999887777766543
No 310
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=42.51 E-value=1e+02 Score=27.00 Aligned_cols=95 Identities=17% Similarity=0.178 Sum_probs=45.9
Q ss_pred eeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCCchHHHHHH-H
Q 013835 246 GFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGL-R 324 (435)
Q Consensus 246 ~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~l~I~hgG~~s~~Eal-~ 324 (435)
.+||.....+++.-+...+.++..+-.+++..+++.. .| |-...-|.+ .
T Consensus 35 v~gsGaKm~pe~~e~~~~~~~~~~~pdf~I~isPN~~-----~P-------------------------GP~~ARE~l~~ 84 (276)
T PF01993_consen 35 VVGSGAKMGPEDVEEVVTKMLKEWDPDFVIVISPNAA-----AP-------------------------GPTKAREMLSA 84 (276)
T ss_dssp EEEEET--SHHHHHHHHHHHHHHH--SEEEEE-S-TT-----SH-------------------------HHHHHHHHHHH
T ss_pred EeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCC-----CC-------------------------CcHHHHHHHHh
Confidence 4444445556655454555556677677777765541 22 122455655 4
Q ss_pred hCCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHH
Q 013835 325 AACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPK 376 (435)
Q Consensus 325 ~G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll~~~ 376 (435)
.|+|.|++....--.. -..+++.|.|. .+-. .|-+.-+=++.|||.
T Consensus 85 ~~iP~IvI~D~p~~k~-kd~l~~~g~GY-Iivk----~DpMIGArREFLDP~ 130 (276)
T PF01993_consen 85 KGIPCIVISDAPTKKA-KDALEEEGFGY-IIVK----ADPMIGARREFLDPV 130 (276)
T ss_dssp SSS-EEEEEEGGGGGG-HHHHHHTT-EE-EEET----TS------TTT--HH
T ss_pred CCCCEEEEcCCCchhh-HHHHHhcCCcE-EEEe----cCccccccccccCHH
Confidence 7999999976542222 36799999995 5432 344555556666654
No 311
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=42.04 E-value=1.3e+02 Score=27.62 Aligned_cols=28 Identities=32% Similarity=0.482 Sum_probs=21.5
Q ss_pred CcCEEEeCCcchhHHHHHHHcCCCEEEeec
Q 013835 95 KADAIIANPPAYGHVHVAEALKIPIHIFFT 124 (435)
Q Consensus 95 ~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~ 124 (435)
+-|++|+.- .+.+.+|...|+|+|.++.
T Consensus 254 ~a~l~I~~D--Sgp~HlAaa~g~P~i~lfg 281 (319)
T TIGR02193 254 GADAVVGVD--TGLTHLAAALDKPTVTLYG 281 (319)
T ss_pred cCCEEEeCC--ChHHHHHHHcCCCEEEEEC
Confidence 559999742 3347899999999999863
No 312
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=42.03 E-value=62 Score=31.15 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=23.2
Q ss_pred cCCccchhHHHHHHHHHHHCCCeEEEE
Q 013835 4 VGTRGDVQPFVAIGKRLQDYGHRVRLA 30 (435)
Q Consensus 4 ~~~~GH~~p~~~la~~L~~rGh~V~~~ 30 (435)
-.+.|-..-.+.|.++|++||++|.=+
T Consensus 9 ~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 9 SSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 346778889999999999999999766
No 313
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=41.98 E-value=1.4e+02 Score=27.29 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=32.6
Q ss_pred cccccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCC
Q 013835 304 FLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERVHARGVG 351 (435)
Q Consensus 304 l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G 351 (435)
+++++++|+.==+ ++.-|+.+|+|.+.++. +.-....++..|..
T Consensus 248 i~~~~~vI~~RlH-~~I~A~~~gvP~i~i~y---~~K~~~~~~~~g~~ 291 (298)
T TIGR03609 248 FASARLVIGMRLH-ALILAAAAGVPFVALSY---DPKVRAFAADAGVP 291 (298)
T ss_pred HhhCCEEEEechH-HHHHHHHcCCCEEEeec---cHHHHHHHHHhCCC
Confidence 8999999998888 56678999999998853 23444555555544
No 314
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=41.98 E-value=2.3e+02 Score=24.41 Aligned_cols=85 Identities=15% Similarity=0.077 Sum_probs=54.8
Q ss_pred chHHHHHHHcC----CCcEEEeeCCCCCCChHHHHHHHHHHHHHh-CCeEEEEcCCCCCCCCCCCCCceEEcCCCCh-hh
Q 013835 229 PESLVKWLEAG----SKPIYIGFGSLPVQEPEKMTQIIVEAFEQT-GQRGIINKGWGGLGNLAEPKDSIYLLDNIPH-DW 302 (435)
Q Consensus 229 ~~~l~~~~~~~----~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~-~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~-~~ 302 (435)
.+.+.+++... .+++||...|. ..++....+.++++.. ++.+....-.. -+. .+
T Consensus 17 ~~~l~~~l~~~~~~~~~i~~IptAs~---~~~~~~~~~~~a~~~l~G~~~~~~~~~~-----------------~~~~~~ 76 (212)
T cd03146 17 LPAIDDLLLSLTKARPKVLFVPTASG---DRDEYTARFYAAFESLRGVEVSHLHLFD-----------------TEDPLD 76 (212)
T ss_pred hHHHHHHHHHhccCCCeEEEECCCCC---CHHHHHHHHHHHHhhccCcEEEEEeccC-----------------cccHHH
Confidence 44566665532 34889988776 3556778888999988 87766443111 111 23
Q ss_pred hcccccEEEEeCCc--------------hHHHHHHHhCCCEEeec
Q 013835 303 LFLQCKAVVHHGGA--------------GTTAAGLRAACPTTIVP 333 (435)
Q Consensus 303 ~l~~~~l~I~hgG~--------------~s~~Eal~~G~P~l~~P 333 (435)
.+..+|+++--||. ..+.+++..|+|++.+.
T Consensus 77 ~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~S 121 (212)
T cd03146 77 ALLEADVIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGWS 121 (212)
T ss_pred HHhcCCEEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEEC
Confidence 36888888888873 23445566799999875
No 315
>PRK14974 cell division protein FtsY; Provisional
Probab=41.92 E-value=1.2e+02 Score=28.32 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=28.3
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCCCc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF 35 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~ 35 (435)
+..+|.|=...+..+|..|..+|++|.+++.+.+
T Consensus 146 ~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 146 VGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred EcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 4456888888999999999999999999876643
No 316
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=41.89 E-value=1.3e+02 Score=25.30 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=22.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCc---HHHHHhcCc
Q 013835 13 FVAIGKRLQDYGHRVRLATHSNF---KDFVLTAGL 44 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~~---~~~~~~~g~ 44 (435)
+..+.+.|+++|+.+.++|.... ...++..|+
T Consensus 97 ~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl 131 (198)
T TIGR01428 97 VPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGL 131 (198)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCC
Confidence 45677889999999999987543 233455564
No 317
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=41.81 E-value=78 Score=27.60 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=25.9
Q ss_pred cccCCccchhHHHHHHHHHHHCCCe-EEEEeCC
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHR-VRLATHS 33 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~-V~~~~~~ 33 (435)
..+|..|-..+...|.++|+++|++ ++.+..+
T Consensus 7 ~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~d 39 (281)
T KOG3062|consen 7 CGLPCSGKSTRAVELREALKERGTKQSVRIIDD 39 (281)
T ss_pred eCCCCCCchhHHHHHHHHHHhhcccceEEEech
Confidence 4578999999999999999999986 5554443
No 318
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=41.68 E-value=2.8e+02 Score=26.25 Aligned_cols=90 Identities=18% Similarity=0.188 Sum_probs=48.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCcHH--------HHHhcCceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHHHhhcc
Q 013835 13 FVAIGKRLQDYGHRVRLATHSNFKD--------FVLTAGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLLPACR 84 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~~~~--------~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (435)
.-.+++.+.+.|.++.+++.....+ .+...|+.++.... ...+ .. ....+..+.
T Consensus 18 ~~~l~~~l~~~g~~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~~~-------~~ep-~~----~~v~~~~~~------ 79 (366)
T PRK09423 18 LARLGEYLKPLGKRALVIADEFVLGIVGDRVEASLKEAGLTVVFEVF-------NGEC-SD----NEIDRLVAI------ 79 (366)
T ss_pred HHHHHHHHHHcCCEEEEEEChhHHHHHHHHHHHHHHhCCCeEEEEEe-------CCCC-CH----HHHHHHHHH------
Confidence 4567777877788888888654322 23445665532110 0111 11 112222111
Q ss_pred CCCccCCcccCcCEEEe---CCcchhHHHHHHHcCCCEEEeeccC
Q 013835 85 DPDLDSGIAFKADAIIA---NPPAYGHVHVAEALKIPIHIFFTMP 126 (435)
Q Consensus 85 ~~~~~~~~~~~pDlVi~---d~~~~~~~~~A~~~~iP~v~~~~~~ 126 (435)
.++.++|+||. .+..=.+..+|...++|+|.+-++.
T Consensus 80 ------~~~~~~d~IIavGGGsv~D~aK~iA~~~~~p~i~IPTta 118 (366)
T PRK09423 80 ------AEENGCDVVIGIGGGKTLDTAKAVADYLGVPVVIVPTIA 118 (366)
T ss_pred ------HHhcCCCEEEEecChHHHHHHHHHHHHcCCCEEEeCCcc
Confidence 12238999996 2333334667778899999986643
No 319
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=41.52 E-value=1.6e+02 Score=28.94 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=21.3
Q ss_pred CcCEEEeCCcchhHHHHHHHcCCCEEEe
Q 013835 95 KADAIIANPPAYGHVHVAEALKIPIHIF 122 (435)
Q Consensus 95 ~pDlVi~d~~~~~~~~~A~~~~iP~v~~ 122 (435)
+||++|.++.. ..+|+++|+|++-+
T Consensus 371 ~~dliig~s~~---~~~a~~~gip~~~~ 395 (455)
T PRK14476 371 GADLLITNSHG---RQAAERLGIPLLRV 395 (455)
T ss_pred CCCEEEECchh---HHHHHHcCCCEEEe
Confidence 79999999765 56999999999865
No 320
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=41.49 E-value=76 Score=28.11 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=22.8
Q ss_pred cccccEEEEeC--Cc----hHHHHHHHhCCCEEeec
Q 013835 304 FLQCKAVVHHG--GA----GTTAAGLRAACPTTIVP 333 (435)
Q Consensus 304 l~~~~l~I~hg--G~----~s~~Eal~~G~P~l~~P 333 (435)
--++|++||.- |. .-+.-|...|+|+|.+-
T Consensus 194 q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~ 229 (257)
T COG2099 194 QYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIE 229 (257)
T ss_pred HhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEe
Confidence 47899999864 33 33677899999999873
No 321
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=41.04 E-value=62 Score=25.91 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=20.2
Q ss_pred HHHHHHCCC-eEEEEeCCC-----------cHHHHHhcCceeEEc
Q 013835 17 GKRLQDYGH-RVRLATHSN-----------FKDFVLTAGLEFYPL 49 (435)
Q Consensus 17 a~~L~~rGh-~V~~~~~~~-----------~~~~~~~~g~~~~~i 49 (435)
++.|.++|| +|.|++... +.+...+.|+++...
T Consensus 1 ~~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~ 45 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEEL 45 (160)
T ss_dssp HHHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGE
T ss_pred ChHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCee
Confidence 578999998 688887331 223445567775554
No 322
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=41.01 E-value=90 Score=28.21 Aligned_cols=90 Identities=22% Similarity=0.254 Sum_probs=48.1
Q ss_pred chhHHHHHHHHHHHCCC-e-EEEEeCCC-----------cHHHHHhcCceeEEccccccCCCCCCCCCchhhHHHHHHHH
Q 013835 9 DVQPFVAIGKRLQDYGH-R-VRLATHSN-----------FKDFVLTAGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEI 75 (435)
Q Consensus 9 H~~p~~~la~~L~~rGh-~-V~~~~~~~-----------~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (435)
+..-....++.|.++|| + |.+++.+. +.+.+++.|+++...... .+..+..... ..
T Consensus 102 ~~~a~~~a~~~Li~~Gh~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~-------~~~~~~~~g~----~~ 170 (279)
T PF00532_consen 102 NYEAGYEATEYLIKKGHRRPIAFIGGPEDSSTSRERLQGYRDALKEAGLPIDEEWIF-------EGDFDYESGY----EA 170 (279)
T ss_dssp HHHHHHHHHHHHHHTTCCSTEEEEEESTTTHHHHHHHHHHHHHHHHTTSCEEEEEEE-------ESSSSHHHHH----HH
T ss_pred chHHHHHHHHHHHhcccCCeEEEEecCcchHHHHHHHHHHHHHHHHcCCCCCccccc-------ccCCCHHHHH----HH
Confidence 34456678899999999 5 67775432 123445677744443210 0011222211 22
Q ss_pred HHHHHhhccCCCccCCcccCcC--EEEeC--CcchhHHHHHHHcC---CCEEE
Q 013835 76 IYSLLPACRDPDLDSGIAFKAD--AIIAN--PPAYGHVHVAEALK---IPIHI 121 (435)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~pD--lVi~d--~~~~~~~~~A~~~~---iP~v~ 121 (435)
...++.. .|| .|++. ..+.+++.+++..| +|--+
T Consensus 171 ~~~ll~~------------~p~idai~~~nd~~A~ga~~~l~~~gr~~ip~di 211 (279)
T PF00532_consen 171 ARELLES------------HPDIDAIFCANDMMAIGAIRALRERGRLKIPEDI 211 (279)
T ss_dssp HHHHHHT------------STT-SEEEESSHHHHHHHHHHHHHTT-TCTTTEE
T ss_pred HHHHHhh------------CCCCEEEEEeCHHHHHHHHHHHHHcCCcccChhh
Confidence 2222221 355 99974 56666777888877 67433
No 323
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=40.39 E-value=1.5e+02 Score=27.66 Aligned_cols=81 Identities=22% Similarity=0.306 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCCcHHHHHh--cCceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHHHhhccCCCcc
Q 013835 12 PFVAIGKRLQDYGHRVRLATHSNFKDFVLT--AGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLLPACRDPDLD 89 (435)
Q Consensus 12 p~~~la~~L~~rGh~V~~~~~~~~~~~~~~--~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (435)
-...+++.|.++|.+|.+..+..-.+..++ .++..... ..+..++.+ +..+..
T Consensus 196 ~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~---------l~~k~sL~e----~~~li~------------ 250 (334)
T COG0859 196 HYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNAVI---------LAGKTSLEE----LAALIA------------ 250 (334)
T ss_pred HHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcCCccc---------cCCCCCHHH----HHHHHh------------
Confidence 477889999999988888776532222221 12211110 011222221 222211
Q ss_pred CCcccCcCEEEeCCcchhHHHHHHHcCCCEEEeec
Q 013835 90 SGIAFKADAIIANPPAYGHVHVAEALKIPIHIFFT 124 (435)
Q Consensus 90 ~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~ 124 (435)
..|++|+.- .+...+|..+|.|+|.++.
T Consensus 251 -----~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg 278 (334)
T COG0859 251 -----GADLVIGND--SGPMHLAAALGTPTIALYG 278 (334)
T ss_pred -----cCCEEEccC--ChHHHHHHHcCCCEEEEEC
Confidence 568888742 3347899999999999864
No 324
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.98 E-value=1.6e+02 Score=28.95 Aligned_cols=27 Identities=19% Similarity=0.082 Sum_probs=19.9
Q ss_pred CcCEEEeCCcc---hhHHHHHHHcCCCEEE
Q 013835 95 KADAIIANPPA---YGHVHVAEALKIPIHI 121 (435)
Q Consensus 95 ~pDlVi~d~~~---~~~~~~A~~~~iP~v~ 121 (435)
++|+||..+.. ...+..|+..|||++.
T Consensus 77 ~~dlVV~Spgi~~~~p~~~~a~~~~i~i~s 106 (458)
T PRK01710 77 GFDVIFKTPSMRIDSPELVKAKEEGAYITS 106 (458)
T ss_pred cCCEEEECCCCCCCchHHHHHHHcCCcEEe
Confidence 67999987433 2446788899999875
No 325
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=39.86 E-value=2e+02 Score=27.51 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=21.9
Q ss_pred cccCcCEEEeCCcchhHHHHHHHcCCCEEEee
Q 013835 92 IAFKADAIIANPPAYGHVHVAEALKIPIHIFF 123 (435)
Q Consensus 92 ~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~ 123 (435)
++.+||+++.+... ...+++.|+|++.+.
T Consensus 345 ~~~~pdl~ig~~~~---~~~~~~~~ip~~~~~ 373 (399)
T cd00316 345 RELKPDLIIGGSKG---RYIAKKLGIPLVRIG 373 (399)
T ss_pred hhcCCCEEEECCcH---HHHHHHhCCCEEEcC
Confidence 34489999999653 457888999997643
No 326
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=39.36 E-value=1.3e+02 Score=32.05 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=15.8
Q ss_pred HHHHHHHHHHCCCeEEEE
Q 013835 13 FVAIGKRLQDYGHRVRLA 30 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~ 30 (435)
|.+||+.|.++|++|+..
T Consensus 17 ~salA~~L~~~G~~V~~s 34 (809)
T PRK14573 17 MSALAHILLDRGYSVSGS 34 (809)
T ss_pred HHHHHHHHHHCCCeEEEE
Confidence 677899999999999875
No 327
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=39.31 E-value=2.1e+02 Score=23.38 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=30.7
Q ss_pred ccCCccchhHHHHHHHHHHHCCCeEEEE---eCC--CcH-HHHHh-cCceeEEcc
Q 013835 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLA---THS--NFK-DFVLT-AGLEFYPLD 50 (435)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~V~~~---~~~--~~~-~~~~~-~g~~~~~i~ 50 (435)
+.++.|=....+.+|-+...+|++|.|+ -.. ... ..++. .++++...+
T Consensus 9 ~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g 63 (159)
T cd00561 9 TGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMG 63 (159)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECC
Confidence 4567777777777777778899999995 221 111 22222 367777766
No 328
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=39.09 E-value=21 Score=33.63 Aligned_cols=101 Identities=18% Similarity=0.138 Sum_probs=48.4
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHhcC-ceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHHH
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAG-LEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLL 80 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~~g-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
+..|+.|...-...+++...+.|+.|.++..++..+ +.- +..--++.+... ...+.. .......++.+.
T Consensus 16 LG~GGGG~p~~~~~~~~~~l~~~~~v~lv~~del~d---d~~v~~v~~~GsP~v~------~E~lp~-g~e~~~a~~~le 85 (353)
T PF06032_consen 16 LGSGGGGDPYIGRLMAEQALREGGPVRLVDPDELPD---DDLVVPVGMMGSPTVS------VEKLPS-GDEALRAVEALE 85 (353)
T ss_dssp TTTT-SS-HHHHHHHHTT-SBTTS-EEEE-GGG--S---SE-EEEEEEEE-HHHT------T-SS-H-HHHHHHHHHHHH
T ss_pred EEEcCCccHHHHHHHHHHHHhCCCCeEEEEHhHcCC---CCcEeEEEEeCCChHH------hccCCC-chHHHHHHHHHH
Confidence 456788888888888888888999999999876532 111 111111211000 011111 112222222222
Q ss_pred hhccCCCccCCcccCcCEEEeC----CcchhHHHHHHHcCCCEEE
Q 013835 81 PACRDPDLDSGIAFKADAIIAN----PPAYGHVHVAEALKIPIHI 121 (435)
Q Consensus 81 ~~~~~~~~~~~~~~~pDlVi~d----~~~~~~~~~A~~~~iP~v~ 121 (435)
+.. ..++|.|+.. .....++++|.++|+|+|=
T Consensus 86 ~~~---------g~~~~av~~~EiGG~N~~~pl~~Aa~~GlPvvD 121 (353)
T PF06032_consen 86 KYL---------GRKIDAVIPIEIGGSNGLNPLLAAAQLGLPVVD 121 (353)
T ss_dssp HHT---------T--EEEEE-SSSSCCHHHHHHHHHHHHT-EEES
T ss_pred Hhh---------CCCccEEeehhcCccchhHHHHHHHHhCCCEEc
Confidence 211 1278999874 3445568899999999874
No 329
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=39.01 E-value=1.4e+02 Score=28.92 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=21.7
Q ss_pred ccCcCEEEeCCcchhHHHHHHHcCCCEEEe
Q 013835 93 AFKADAIIANPPAYGHVHVAEALKIPIHIF 122 (435)
Q Consensus 93 ~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~ 122 (435)
+.+||+||..+.. ..+|+++|||++.+
T Consensus 356 ~~~pdliig~s~~---~~~a~~lgip~~~~ 382 (415)
T cd01977 356 MLKPDIILTGPRV---GELVKKLHVPYVNI 382 (415)
T ss_pred hcCCCEEEecCcc---chhhhhcCCCEEec
Confidence 3489999998654 35889999999875
No 330
>PRK05920 aromatic acid decarboxylase; Validated
Probab=38.94 E-value=35 Score=29.29 Aligned_cols=36 Identities=11% Similarity=-0.057 Sum_probs=28.1
Q ss_pred CCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHH
Q 013835 5 GTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVL 40 (435)
Q Consensus 5 ~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~ 40 (435)
.|.....=...+.+.|.+.|++|+++.+....+.+.
T Consensus 11 TGsiaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~ 46 (204)
T PRK05920 11 TGASGAIYGVRLLECLLAADYEVHLVISKAAQKVLA 46 (204)
T ss_pred eCHHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHHH
Confidence 344455678889999999999999998877666654
No 331
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=38.76 E-value=1.5e+02 Score=26.23 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=23.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCc---HHHHHhcCc
Q 013835 13 FVAIGKRLQDYGHRVRLATHSNF---KDFVLTAGL 44 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~~---~~~~~~~g~ 44 (435)
+..+.+.|+++|+.+.++|.... ...++..|+
T Consensus 113 v~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl 147 (248)
T PLN02770 113 LYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGL 147 (248)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCC
Confidence 57778889999999999987542 234455554
No 332
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=38.72 E-value=38 Score=26.43 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=25.9
Q ss_pred hcccccEEEEeCC-----chHHHHH---HHhCCCEEeec
Q 013835 303 LFLQCKAVVHHGG-----AGTTAAG---LRAACPTTIVP 333 (435)
Q Consensus 303 ~l~~~~l~I~hgG-----~~s~~Ea---l~~G~P~l~~P 333 (435)
++..||++|-.=| ||+...| ++.|+|+|++-
T Consensus 72 li~~aDvvVvrFGekYKQWNaAfDAg~aaAlgKplI~lh 110 (144)
T TIGR03646 72 LIEKADVVIALFGEKYKQWNAAFDAGYAAALGKPLIILR 110 (144)
T ss_pred HHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEec
Confidence 4899999999988 6887664 88899999874
No 333
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=38.72 E-value=2.1e+02 Score=31.12 Aligned_cols=30 Identities=17% Similarity=0.028 Sum_probs=23.7
Q ss_pred CcccCcCEEEeCCcchhHHHHHHHcCCCEEEee
Q 013835 91 GIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 123 (435)
Q Consensus 91 ~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~ 123 (435)
+++.+||++|.+... ..+|+++|||++-..
T Consensus 385 i~~~~pDLlig~~~~---~~~a~k~giP~~~~~ 414 (917)
T PRK14477 385 MREKMPDLIVAGGKT---KFLALKTRTPFLDIN 414 (917)
T ss_pred HHhcCCCEEEecCch---hhHHHHcCCCeEEcc
Confidence 455699999997654 568999999999654
No 334
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=38.63 E-value=1.7e+02 Score=24.87 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=22.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCc---HHHHHhcCc
Q 013835 13 FVAIGKRLQDYGHRVRLATHSNF---KDFVLTAGL 44 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~~---~~~~~~~g~ 44 (435)
+..+.+.|+++|+.+.++|.... ...++..|+
T Consensus 90 ~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l 124 (213)
T TIGR01449 90 VEATLGALRAKGLRLGLVTNKPTPLARPLLELLGL 124 (213)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCc
Confidence 56778889999999999987542 234455554
No 335
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=38.53 E-value=38 Score=25.86 Aligned_cols=48 Identities=10% Similarity=0.129 Sum_probs=33.7
Q ss_pred ccCCccchhHHHHHHHHHHHCCCeEEEEeCC----CcHHHHHhcCceeEEcc
Q 013835 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATHS----NFKDFVLTAGLEFYPLD 50 (435)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~----~~~~~~~~~g~~~~~i~ 50 (435)
+.+...|-.-...++..|.++||+|.++-.. ...+.+.+.+...+.+.
T Consensus 7 ~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS 58 (121)
T PF02310_consen 7 CVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGIS 58 (121)
T ss_dssp EBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEE
T ss_pred eeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEE
Confidence 4566777888999999999999999988432 23344445566665553
No 336
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=38.36 E-value=63 Score=27.59 Aligned_cols=48 Identities=23% Similarity=0.298 Sum_probs=30.9
Q ss_pred ccCCccchhHHHHHHHHHHHCCCeEEEEe---CCCcHHHHHhcCceeEEcc
Q 013835 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLAT---HSNFKDFVLTAGLEFYPLD 50 (435)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~V~~~~---~~~~~~~~~~~g~~~~~i~ 50 (435)
.-|+-|-.+.|+.=|+.++++|.+|.+.. ++.........|++.++--
T Consensus 12 ~apGVGKTy~ML~ea~~l~~~G~DVViG~vethgR~et~~l~~gLe~iP~~ 62 (211)
T PF02702_consen 12 AAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETHGRPETEALLEGLEVIPRK 62 (211)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTT--EEEEE---TT-HHHHHHHCTS-B---E
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCCCcHHHHHHHcCCCcCCCe
Confidence 35788999999999999999999999984 3333333445788877753
No 337
>PRK11914 diacylglycerol kinase; Reviewed
Probab=38.35 E-value=80 Score=29.00 Aligned_cols=82 Identities=16% Similarity=0.100 Sum_probs=46.7
Q ss_pred cEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCCchHHHH
Q 013835 242 PIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAA 321 (435)
Q Consensus 242 ~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~l~I~hgG~~s~~E 321 (435)
.++++--|.. ....+.++.+.+.+++.+..+.+...... ....++- .+..-...|++|.-||=||+.|
T Consensus 12 ~iI~NP~sG~-g~~~~~~~~~~~~l~~~g~~~~~~~t~~~-~~~~~~a----------~~~~~~~~d~vvv~GGDGTi~e 79 (306)
T PRK11914 12 TVLTNPLSGH-GAAPHAAERAIARLHHRGVDVVEIVGTDA-HDARHLV----------AAALAKGTDALVVVGGDGVISN 79 (306)
T ss_pred EEEECCCCCC-CcHHHHHHHHHHHHHHcCCeEEEEEeCCH-HHHHHHH----------HHHHhcCCCEEEEECCchHHHH
Confidence 3445543322 22344566778888877766543322111 0000000 0111245689999999999999
Q ss_pred HH----HhCCCEEeecCC
Q 013835 322 GL----RAACPTTIVPFF 335 (435)
Q Consensus 322 al----~~G~P~l~~P~~ 335 (435)
++ ..++|+-++|..
T Consensus 80 vv~~l~~~~~~lgiiP~G 97 (306)
T PRK11914 80 ALQVLAGTDIPLGIIPAG 97 (306)
T ss_pred HhHHhccCCCcEEEEeCC
Confidence 87 347899999964
No 338
>PRK06849 hypothetical protein; Provisional
Probab=38.23 E-value=1.8e+02 Score=27.85 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCC
Q 013835 11 QPFVAIGKRLQDYGHRVRLATHSN 34 (435)
Q Consensus 11 ~p~~~la~~L~~rGh~V~~~~~~~ 34 (435)
.-.+.+|+.|.++||+|+++....
T Consensus 15 ~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 15 PAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 358899999999999999996553
No 339
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=38.13 E-value=2.3e+02 Score=25.93 Aligned_cols=71 Identities=25% Similarity=0.208 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh---cccccEEEEeCC--chHHHHHHH--hCCCEE
Q 013835 258 MTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL---FLQCKAVVHHGG--AGTTAAGLR--AACPTT 330 (435)
Q Consensus 258 ~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~---l~~~~l~I~hgG--~~s~~Eal~--~G~P~l 330 (435)
.+..+.++.++.+..+.+-+|...... ....- ...-+-...+ .++..+++.|+| ..=..||+. .-.|-+
T Consensus 145 ~~~pi~~~a~~~gvpv~ihtG~~~~~~--~~~~~--~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a~~~a~~~~nv 220 (293)
T COG2159 145 RLYPIYEAAEELGVPVVIHTGAGPGGA--GLEKG--HSDPLYLDDVARKFPELKIVLGHMGEDYPWELEAIELAYAHPNV 220 (293)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCc--ccccC--CCCchHHHHHHHHCCCCcEEEEecCCCCchhHHHHHHHHhCCCc
Confidence 355688999999999998877543211 01000 0111111222 799999999999 666666643 334444
Q ss_pred ee
Q 013835 331 IV 332 (435)
Q Consensus 331 ~~ 332 (435)
.+
T Consensus 221 y~ 222 (293)
T COG2159 221 YL 222 (293)
T ss_pred ee
Confidence 43
No 340
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=38.12 E-value=2.1e+02 Score=22.90 Aligned_cols=37 Identities=30% Similarity=0.355 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHC--CCeEEEEeCCCcHHHHHhc-CceeEEc
Q 013835 11 QPFVAIGKRLQDY--GHRVRLATHSNFKDFVLTA-GLEFYPL 49 (435)
Q Consensus 11 ~p~~~la~~L~~r--Gh~V~~~~~~~~~~~~~~~-g~~~~~i 49 (435)
.-+..+++.|.+. ||++ ++|.+ -.+.+++. |+++..+
T Consensus 17 ~~l~~~a~~l~~ll~Gf~l-~AT~g-Ta~~L~~~~Gi~v~~v 56 (142)
T PRK05234 17 DDLVAWVKAHKDLLEQHEL-YATGT-TGGLIQEATGLDVTRL 56 (142)
T ss_pred HHHHHHHHHHHHHhcCCEE-EEeCh-HHHHHHhccCCeeEEE
Confidence 4578999999999 9985 45544 45667777 9987665
No 341
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=38.04 E-value=2.6e+02 Score=27.17 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=23.4
Q ss_pred CcccCcCEEEeCCcchhHHHHHHHcCCCEEEee
Q 013835 91 GIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 123 (435)
Q Consensus 91 ~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~ 123 (435)
+++.+||++|.++.. ..+|+++|+|.+.+.
T Consensus 366 i~~~~pdliig~~~~---~~~a~~~gip~~~~~ 395 (430)
T cd01981 366 IARTEPELIFGTQME---RHIGKRLDIPCAVIS 395 (430)
T ss_pred HHhhCCCEEEecchh---hHHHHHcCCCEEEEe
Confidence 344589999999743 457899999998764
No 342
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=38.03 E-value=3.6e+02 Score=26.75 Aligned_cols=34 Identities=9% Similarity=-0.047 Sum_probs=27.3
Q ss_pred cCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHH
Q 013835 4 VGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKD 37 (435)
Q Consensus 4 ~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~ 37 (435)
.|+.|=..-++.++.+.+++|.+|.+++.++..+
T Consensus 271 ~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~ 304 (484)
T TIGR02655 271 ATGTGKTLLVSKFLENACANKERAILFAYEESRA 304 (484)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHH
Confidence 4677777888899999999999999998765443
No 343
>PLN02727 NAD kinase
Probab=38.00 E-value=98 Score=33.04 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=43.9
Q ss_pred hhcccccEEEEeCCchHHHHHHHh----CCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 013835 302 WLFLQCKAVVHHGGAGTTAAGLRA----ACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPKLINAINFMLDPKV 377 (435)
Q Consensus 302 ~~l~~~~l~I~hgG~~s~~Eal~~----G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll~~~~ 377 (435)
++...+|++|+=||=||++.|... ++|+|.+-.. .+|. + .+.+.+++.+.|.++++..|
T Consensus 739 el~~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINlG-------------rLGF--L--Tdi~~ee~~~~L~~Il~G~y 801 (986)
T PLN02727 739 DLHERVDFVACLGGDGVILHASNLFRGAVPPVVSFNLG-------------SLGF--L--TSHYFEDFRQDLRQVIHGNN 801 (986)
T ss_pred hcccCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCC-------------Cccc--c--ccCCHHHHHHHHHHHHcCCc
Confidence 345679999999999999999775 6898877643 3554 2 23467999999999883333
No 344
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=37.90 E-value=1.9e+02 Score=28.54 Aligned_cols=88 Identities=15% Similarity=0.139 Sum_probs=57.8
Q ss_pred CCCChhhh---cccccEEEEeC---CchHHH-HHHHhCCC----EEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCHHH
Q 013835 296 DNIPHDWL---FLQCKAVVHHG---GAGTTA-AGLRAACP----TTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSLPK 364 (435)
Q Consensus 296 ~~~p~~~~---l~~~~l~I~hg---G~~s~~-Eal~~G~P----~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~~~ 364 (435)
..+|.+++ +..||+.+--. |+|.+. |-+++..| +|++..+ |...+.++-++ .+++- +.++
T Consensus 338 ~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~~~GvLILSef------AGaA~~L~~Al-lVNP~--d~~~ 408 (474)
T PRK10117 338 QHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQF------AGAANELTSAL-IVNPY--DRDE 408 (474)
T ss_pred CCCCHHHHHHHHHhccEEEecccccccccccchheeeecCCCCccEEEecc------cchHHHhCCCe-EECCC--CHHH
Confidence 45677765 78999877544 888654 88877653 3444432 22333344455 56654 7799
Q ss_pred HHHHHHHhc---CHHHHHHHHHHHHHhhccC
Q 013835 365 LINAINFML---DPKVKERAVELAEAMEKED 392 (435)
Q Consensus 365 l~~~i~~ll---~~~~~~~~~~~~~~~~~~~ 392 (435)
++++|.+.| ..+-+++.+++.+.+...+
T Consensus 409 ~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~~d 439 (474)
T PRK10117 409 VAAALDRALTMPLAERISRHAEMLDVIVKND 439 (474)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhCC
Confidence 999999988 3567777777777776654
No 345
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=37.47 E-value=38 Score=28.32 Aligned_cols=33 Identities=24% Similarity=0.207 Sum_probs=21.7
Q ss_pred CcccCcCEEEeCCcchh--HHHHHHHcCCCEEEee
Q 013835 91 GIAFKADAIIANPPAYG--HVHVAEALKIPIHIFF 123 (435)
Q Consensus 91 ~~~~~pDlVi~d~~~~~--~~~~A~~~~iP~v~~~ 123 (435)
+...+||+||....... ....-+..|||++.+.
T Consensus 65 ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 65 IVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred HhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 44569999998643322 2233467999998864
No 346
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=37.42 E-value=87 Score=26.02 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=26.4
Q ss_pred cchhHHHHHHHHH-HHCCCeEEEEeCCCcHHHHHhcCceeEEcc
Q 013835 8 GDVQPFVAIGKRL-QDYGHRVRLATHSNFKDFVLTAGLEFYPLD 50 (435)
Q Consensus 8 GH~~p~~~la~~L-~~rGh~V~~~~~~~~~~~~~~~g~~~~~i~ 50 (435)
+.+.-.+..|+.+ ...|.+|.+..+....-.-+..+++++.++
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~ta~~lr~~~~iPVV~I~ 60 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGGTAELLRKHVSIPVVEIP 60 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHHHHHHHHCC-SS-EEEE-
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCHHHHHHHHhCCCCEEEEC
Confidence 4455677889998 788999988766544333334478888887
No 347
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=37.41 E-value=69 Score=24.65 Aligned_cols=46 Identities=17% Similarity=0.275 Sum_probs=35.1
Q ss_pred ccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHhcCceeEE
Q 013835 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYP 48 (435)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~~g~~~~~ 48 (435)
.+...|+...+...++.++++|..|..+|........+...+.+..
T Consensus 59 ~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~ 104 (131)
T PF01380_consen 59 IISYSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVLYI 104 (131)
T ss_dssp EEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEE
T ss_pred eeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEe
Confidence 3456788899999999999999999999876655666566555444
No 348
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=37.05 E-value=1.8e+02 Score=26.39 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=27.6
Q ss_pred CccchhHHHHHHHHHHHCCCeEEEEeC---CCc-----HHHHHhcCceeEEcc
Q 013835 6 TRGDVQPFVAIGKRLQDYGHRVRLATH---SNF-----KDFVLTAGLEFYPLD 50 (435)
Q Consensus 6 ~~GH~~p~~~la~~L~~rGh~V~~~~~---~~~-----~~~~~~~g~~~~~i~ 50 (435)
++|+-...+.+.+...+.|.+..+++. +.. ...+.+.|+++.-+.
T Consensus 115 Th~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~ 167 (275)
T PRK08335 115 THSFSSAVLEILKTAKRKGKRFKVILTESAPDYEGLALANELEFLGIEFEVIT 167 (275)
T ss_pred EECCcHHHHHHHHHHHHcCCceEEEEecCCCchhHHHHHHHHHHCCCCEEEEe
Confidence 445555677777778888876666642 222 223455777777665
No 349
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=36.96 E-value=34 Score=28.68 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=21.7
Q ss_pred cCCccchhHHHHHHHHHHHCCCeEEEEeCCC
Q 013835 4 VGTRGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (435)
Q Consensus 4 ~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~ 34 (435)
.++.|++- -.|+++..+|||+||-++...
T Consensus 6 IgAsG~~G--s~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 6 IGASGKAG--SRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred EecCchhH--HHHHHHHHhCCCeeEEEEeCh
Confidence 34555543 467899999999999998654
No 350
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=36.88 E-value=28 Score=29.12 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=27.3
Q ss_pred CCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHH
Q 013835 5 GTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVL 40 (435)
Q Consensus 5 ~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~ 40 (435)
.+.+...-...+.+.|+++|++|.++.++...+.+.
T Consensus 8 tGs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 8 TGSIAAYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred cCHHHHHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 344556677799999999999999998776555544
No 351
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=36.82 E-value=21 Score=30.73 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=29.4
Q ss_pred hhccCCCccCCcccCcCEEEeC---------Ccc-----hh--------HHHHHHHcCCCEEEeeccC
Q 013835 81 PACRDPDLDSGIAFKADAIIAN---------PPA-----YG--------HVHVAEALKIPIHIFFTMP 126 (435)
Q Consensus 81 ~~~~~~~~~~~~~~~pDlVi~d---------~~~-----~~--------~~~~A~~~~iP~v~~~~~~ 126 (435)
....+.+++.+++++||+||+. +.. +. ..-.++.+|||++++.+..
T Consensus 234 rkl~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGG 301 (324)
T KOG1344|consen 234 RKLKRCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGG 301 (324)
T ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCc
Confidence 3333444556778999999973 211 11 1346788999999986543
No 352
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=36.60 E-value=1.5e+02 Score=27.43 Aligned_cols=44 Identities=7% Similarity=0.092 Sum_probs=24.8
Q ss_pred ccchhHHHHHHHHHHHCCCeEEEEeCC---Cc-----HHHHHhcCceeEEcc
Q 013835 7 RGDVQPFVAIGKRLQDYGHRVRLATHS---NF-----KDFVLTAGLEFYPLD 50 (435)
Q Consensus 7 ~GH~~p~~~la~~L~~rGh~V~~~~~~---~~-----~~~~~~~g~~~~~i~ 50 (435)
+|.-.....+.+...++|.+..+++.+ .. ...+.+.|+++.-++
T Consensus 127 ~~~S~tv~~~l~~A~~~~k~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~ 178 (310)
T PRK08535 127 HCNSSAALSVIKTAHEQGKDIEVIATETRPRNQGHITAKELAEYGIPVTLIV 178 (310)
T ss_pred eCCcHHHHHHHHHHHHCCCeEEEEEecCCchhhHHHHHHHHHHCCCCEEEEe
Confidence 444455566666776777666555422 21 133446777777765
No 353
>PRK10490 sensor protein KdpD; Provisional
Probab=36.46 E-value=39 Score=36.48 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=34.9
Q ss_pred ccCCccchhHHHHHHHHHHHCCCeEEEEe---CCCcHHHHHhcCceeEEc
Q 013835 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLAT---HSNFKDFVLTAGLEFYPL 49 (435)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~V~~~~---~~~~~~~~~~~g~~~~~i 49 (435)
.-||-|-.+.|+.-|++++++|++|.+-. ++.......-.|++.++-
T Consensus 31 ~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~h~r~~t~~~~~~l~~~p~ 80 (895)
T PRK10490 31 ACAGVGKTYAMLQEAQRLRAQGLDVLVGVVETHGRKETAALLEGLTVLPP 80 (895)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeCCCCHHHHHHhcCCCcCCC
Confidence 34788999999999999999999998873 333333334567776664
No 354
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=36.40 E-value=1.4e+02 Score=28.51 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=26.9
Q ss_pred cCCccchhHHHHHHHHHHHCCCeEEEEeCCCc
Q 013835 4 VGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF 35 (435)
Q Consensus 4 ~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~ 35 (435)
..|.|=...+..||..+.++|++|.+++.+.+
T Consensus 214 ptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 214 QTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 45778888899999999999999999987654
No 355
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=36.09 E-value=42 Score=26.80 Aligned_cols=49 Identities=14% Similarity=0.126 Sum_probs=36.1
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeC----CCcHHHHHhcCceeEEcc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATH----SNFKDFVLTAGLEFYPLD 50 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~----~~~~~~~~~~g~~~~~i~ 50 (435)
.+.|.-||-...--++++|++.|++|..... ++......+...+.+-+.
T Consensus 18 ak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvS 70 (143)
T COG2185 18 AKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVS 70 (143)
T ss_pred eccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEE
Confidence 3567789999999999999999999998842 333334445667776664
No 356
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=36.01 E-value=40 Score=27.63 Aligned_cols=44 Identities=20% Similarity=0.263 Sum_probs=30.2
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCCC--cHHHHHhcCceeEEcc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSN--FKDFVLTAGLEFYPLD 50 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~--~~~~~~~~g~~~~~i~ 50 (435)
+-||++|| +-|.-|++.|++|++...+. ..+..++.||+..++.
T Consensus 10 iGyGsQG~-----a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~ 55 (165)
T PF07991_consen 10 IGYGSQGH-----AHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVA 55 (165)
T ss_dssp ES-SHHHH-----HHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHH
T ss_pred ECCChHHH-----HHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHH
Confidence 34666666 45778999999999986543 4577888999988775
No 357
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=35.96 E-value=2.6e+02 Score=25.25 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=19.1
Q ss_pred CcCEEEeCCcchhHHHHHHHcCCCEEEeec
Q 013835 95 KADAIIANPPAYGHVHVAEALKIPIHIFFT 124 (435)
Q Consensus 95 ~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~ 124 (435)
+-|++|+- .. .+..=+...|+|++.+..
T Consensus 241 ~aDl~Is~-~G-~T~~E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 241 EADLAIGA-AG-STSWERCCLGLPSLAICL 268 (279)
T ss_pred HCCEEEEC-Cc-hHHHHHHHcCCCEEEEEe
Confidence 45999984 22 234556778999998753
No 358
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=35.95 E-value=2.2e+02 Score=24.51 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=18.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCCC
Q 013835 13 FVAIGKRLQDYGHRVRLATHSN 34 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~ 34 (435)
=..||+.|.+.||+|++.+...
T Consensus 13 G~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 13 GSALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred HHHHHHHHHhCCCeEEEecCCC
Confidence 3578999999999999997543
No 359
>PRK09620 hypothetical protein; Provisional
Probab=35.92 E-value=43 Score=29.33 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=25.1
Q ss_pred CcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEE
Q 013835 241 KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIIN 276 (435)
Q Consensus 241 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~ 276 (435)
..++|.|--......+++++...+.+.+.+..+++.
T Consensus 145 ~~~~vGFkaEt~~~~~~l~~~A~~kl~~k~~D~iva 180 (229)
T PRK09620 145 ETVLVGFKLESDVNEEELFERAKNRMEEAKASVMIA 180 (229)
T ss_pred CCEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 366777766554444567777778888878888865
No 360
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=35.53 E-value=1.7e+02 Score=25.26 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=20.9
Q ss_pred CccchhHHH---HHHHHHHHCCCeEEEEeC
Q 013835 6 TRGDVQPFV---AIGKRLQDYGHRVRLATH 32 (435)
Q Consensus 6 ~~GH~~p~~---~la~~L~~rGh~V~~~~~ 32 (435)
=.||+.+.+ .++|.++.+|++|.+++.
T Consensus 35 HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g 64 (213)
T cd00672 35 HIGHARTYVVFDVLRRYLEDLGYKVRYVQN 64 (213)
T ss_pred ccccchhHHHHHHHHHHHHhcCCeeEEEee
Confidence 468887643 468888889999999974
No 361
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=35.47 E-value=2.1e+02 Score=22.09 Aligned_cols=74 Identities=15% Similarity=0.185 Sum_probs=47.3
Q ss_pred HHHHHHHcCCCcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEE
Q 013835 231 SLVKWLEAGSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAV 310 (435)
Q Consensus 231 ~l~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~l~ 310 (435)
+..+|+. .+-+++|.|-.........+..+++.+.+.+.-.++...+.. +.++|+.
T Consensus 35 d~~~~l~--~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~---~~~iP~~------------------- 90 (123)
T PF07905_consen 35 DPSDWLR--GGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRY---LDEIPEE------------------- 90 (123)
T ss_pred CHHHhCC--CCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCc---cccCCHH-------------------
Confidence 4567763 446777877775552333456688989888888776643322 1234432
Q ss_pred EEeCCchHHHHHHHhCCCEEeecCC
Q 013835 311 VHHGGAGTTAAGLRAACPTTIVPFF 335 (435)
Q Consensus 311 I~hgG~~s~~Eal~~G~P~l~~P~~ 335 (435)
.+..|=.++.|++.+|..
T Consensus 91 -------~i~~A~~~~lPli~ip~~ 108 (123)
T PF07905_consen 91 -------IIELADELGLPLIEIPWE 108 (123)
T ss_pred -------HHHHHHHcCCCEEEeCCC
Confidence 356677888999999864
No 362
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=35.46 E-value=2.5e+02 Score=23.03 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCCC
Q 013835 13 FVAIGKRLQDYGHRVRLATHSN 34 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~ 34 (435)
+..+.+.|+++|+.+.++|...
T Consensus 47 v~e~L~~Lk~~G~~l~I~TN~~ 68 (166)
T TIGR01664 47 IPAKLQELDDEGYKIVIFTNQS 68 (166)
T ss_pred HHHHHHHHHHCCCEEEEEeCCc
Confidence 6788899999999999999644
No 363
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=35.38 E-value=1.1e+02 Score=25.04 Aligned_cols=31 Identities=10% Similarity=0.018 Sum_probs=24.1
Q ss_pred ccccEEEEeCCc------hHHHHHHHhCCCEEeecCC
Q 013835 305 LQCKAVVHHGGA------GTTAAGLRAACPTTIVPFF 335 (435)
Q Consensus 305 ~~~~l~I~hgG~------~s~~Eal~~G~P~l~~P~~ 335 (435)
.+..++++|+|- +.+.+|...++|+|++.-.
T Consensus 62 g~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g~ 98 (164)
T cd07039 62 GKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQ 98 (164)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 345677777764 6789999999999999743
No 364
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=35.33 E-value=3.2e+02 Score=26.34 Aligned_cols=30 Identities=27% Similarity=0.134 Sum_probs=23.2
Q ss_pred CCcccCcCEEEeCCcchhHHHHHHHcCCCEEEe
Q 013835 90 SGIAFKADAIIANPPAYGHVHVAEALKIPIHIF 122 (435)
Q Consensus 90 ~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~ 122 (435)
.+++.+||+++.++.. ..+|+++|+|++..
T Consensus 351 ~i~~~~pDl~ig~s~~---~~~a~~~gip~~~~ 380 (410)
T cd01968 351 LLKEKKADLLVAGGKE---RYLALKLGIPFCDI 380 (410)
T ss_pred HHhhcCCCEEEECCcc---hhhHHhcCCCEEEc
Confidence 3455689999999654 46899999999854
No 365
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=35.23 E-value=58 Score=22.69 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHCCCeEEEEeCC
Q 013835 12 PFVAIGKRLQDYGHRVRLATHS 33 (435)
Q Consensus 12 p~~~la~~L~~rGh~V~~~~~~ 33 (435)
.-+.+|..|++.|.+||++...
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHHhCcEEEEEecc
Confidence 4578999999999999999754
No 366
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=35.23 E-value=16 Score=27.75 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCeEEEEcCCCCCCCC-CCCCCceEEc-------CCCChhhh---cccccEEEEeCCchHHHHHH
Q 013835 259 TQIIVEAFEQTGQRGIINKGWGGLGNL-AEPKDSIYLL-------DNIPHDWL---FLQCKAVVHHGGAGTTAAGL 323 (435)
Q Consensus 259 ~~~~~~~~~~~~~~~iv~~~~~~~~~~-~~~~~~v~~~-------~~~p~~~~---l~~~~l~I~hgG~~s~~Eal 323 (435)
--.+++++++.+.+.+..-...+.... ....+.+.+. +|+..+.+ ..+..+...|+|+|-+.|..
T Consensus 14 a~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~pGyg~lse~~ 89 (110)
T PF00289_consen 14 AVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHPGYGFLSENA 89 (110)
T ss_dssp HHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEESTSSTTTTHH
T ss_pred HHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhcCcccccccchhHHHH
Confidence 344789999999998877543332111 1133444444 36777776 34446777899997766553
No 367
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=35.11 E-value=17 Score=30.28 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=21.1
Q ss_pred ccccEEEEeCCchHHHHHHHhCCCEEeecCC
Q 013835 305 LQCKAVVHHGGAGTTAAGLRAACPTTIVPFF 335 (435)
Q Consensus 305 ~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~ 335 (435)
..+|++|++||...++.... ++|+|-++..
T Consensus 33 ~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s 62 (176)
T PF06506_consen 33 EGADVIISRGGTAELLRKHV-SIPVVEIPIS 62 (176)
T ss_dssp TT-SEEEEEHHHHHHHHCC--SS-EEEE---
T ss_pred cCCeEEEECCHHHHHHHHhC-CCCEEEECCC
Confidence 77899999999888888877 8999988755
No 368
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=34.99 E-value=50 Score=22.38 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.4
Q ss_pred HHHHHHHHHCCCeEEEEe
Q 013835 14 VAIGKRLQDYGHRVRLAT 31 (435)
Q Consensus 14 ~~la~~L~~rGh~V~~~~ 31 (435)
+..|..|+++|++|+++=
T Consensus 9 l~aA~~L~~~g~~v~v~E 26 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFE 26 (68)
T ss_dssp HHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHCCCcEEEEe
Confidence 567888999999999993
No 369
>PRK04148 hypothetical protein; Provisional
Probab=34.75 E-value=61 Score=25.63 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=17.9
Q ss_pred CcCEEEeCC----cchhHHHHHHHcCCCEEEe
Q 013835 95 KADAIIANP----PAYGHVHVAEALKIPIHIF 122 (435)
Q Consensus 95 ~pDlVi~d~----~~~~~~~~A~~~~iP~v~~ 122 (435)
..|+|-+-- ...+.+.+|++.|.++++.
T Consensus 77 ~a~liysirpp~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 77 NAKLIYSIRPPRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred cCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 567776531 1223467888888888774
No 370
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=34.67 E-value=42 Score=32.16 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=20.2
Q ss_pred ccchhHHH---HHHHHHHHCCCeEEEEeC
Q 013835 7 RGDVQPFV---AIGKRLQDYGHRVRLATH 32 (435)
Q Consensus 7 ~GH~~p~~---~la~~L~~rGh~V~~~~~ 32 (435)
.||+.|++ .+||.++.+||+|.++++
T Consensus 16 lGH~~~~l~ADv~aR~~r~~G~~v~~~tG 44 (391)
T PF09334_consen 16 LGHLYPYLAADVLARYLRLRGHDVLFVTG 44 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CChhHHHHHHHHHHHHHhhcccceeeEEe
Confidence 58999754 568888889999999974
No 371
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=34.65 E-value=3.2e+02 Score=27.43 Aligned_cols=30 Identities=13% Similarity=0.064 Sum_probs=23.5
Q ss_pred CcccCcCEEEeCCcchhHHHHHHHcCCCEEEee
Q 013835 91 GIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 123 (435)
Q Consensus 91 ~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~ 123 (435)
++..+||++|.++.. ..+|+.+|+|.|-+.
T Consensus 433 l~~~~~DlliG~s~~---k~~a~~~giPlir~g 462 (515)
T TIGR01286 433 VFTEPVDFLIGNSYG---KYIQRDTLVPLIRIG 462 (515)
T ss_pred HhhcCCCEEEECchH---HHHHHHcCCCEEEec
Confidence 334589999998754 578999999998763
No 372
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=34.57 E-value=17 Score=34.57 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=17.3
Q ss_pred EeCCchHHHHHHHhCCCEEeec
Q 013835 312 HHGGAGTTAAGLRAACPTTIVP 333 (435)
Q Consensus 312 ~hgG~~s~~Eal~~G~P~l~~P 333 (435)
|.||...+.|-=.+|+|++.+-
T Consensus 350 ~r~~a~m~keiE~~GiPvv~~~ 371 (431)
T TIGR01918 350 TRCGATMVKEIERAGIPVVHMC 371 (431)
T ss_pred hhHHHHHHHHHHHcCCCEEEEe
Confidence 5677777888888999999664
No 373
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=34.56 E-value=1.6e+02 Score=28.59 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=27.4
Q ss_pred cccCCccchhHHHHHHHHHH--HCCCeEEEEeCCCc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQ--DYGHRVRLATHSNF 35 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~--~rGh~V~~~~~~~~ 35 (435)
+..+|-|=...+..||.+++ +.|++|.+++.+.+
T Consensus 227 vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 227 VGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 44567888888999999987 56899999987764
No 374
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=34.41 E-value=1.9e+02 Score=26.96 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=26.2
Q ss_pred HHHHHHHhCCCEEeecCCCChhhHHHHHHHcCCCC
Q 013835 318 TTAAGLRAACPTTIVPFFGDQPFWGERVHARGVGP 352 (435)
Q Consensus 318 s~~Eal~~G~P~l~~P~~~dQ~~na~~v~~~g~G~ 352 (435)
.-.+....+.++..+|...+.......+++.+-.+
T Consensus 268 ~~~~~~f~~~~v~~vp~~~ee~~g~~~l~~l~~~l 302 (322)
T COG0003 268 KELEETFSDLAVVKVPLLAEEPVGLEALEKLGDLL 302 (322)
T ss_pred HHHHHhhcccceEEecccccccccHHHHHHHHHhc
Confidence 45666778888888898888877777777766554
No 375
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=34.40 E-value=42 Score=29.94 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=25.3
Q ss_pred CCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHH
Q 013835 5 GTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFV 39 (435)
Q Consensus 5 ~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~ 39 (435)
+|.|=..=..++|.+|.++|+.|+|++..++...+
T Consensus 114 ~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L 148 (254)
T COG1484 114 PGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL 148 (254)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 44455556778888888889999999876655444
No 376
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=34.17 E-value=2.1e+02 Score=27.08 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=35.2
Q ss_pred ceEEcCCCChhhh---cccccEEEEeCCchHHHHHHHhCCCEE
Q 013835 291 SIYLLDNIPHDWL---FLQCKAVVHHGGAGTTAAGLRAACPTT 330 (435)
Q Consensus 291 ~v~~~~~~p~~~~---l~~~~l~I~hgG~~s~~Eal~~G~P~l 330 (435)
.+.+.++++|.+. +-+||+=+-+|-- |+.-|..+|+|+|
T Consensus 243 ~~~~LPf~~Q~~yD~LLW~cD~NfVRGED-SFVRAqWAgkPfv 284 (371)
T TIGR03837 243 TVAVLPFVPQDDYDRLLWACDLNFVRGED-SFVRAQWAGKPFV 284 (371)
T ss_pred EEEEcCCCChhhHHHHHHhChhcEeechh-HHHHHHHcCCCce
Confidence 6788899999776 9999999999877 9999999999999
No 377
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=34.12 E-value=18 Score=34.52 Aligned_cols=22 Identities=23% Similarity=0.151 Sum_probs=17.4
Q ss_pred EeCCchHHHHHHHhCCCEEeec
Q 013835 312 HHGGAGTTAAGLRAACPTTIVP 333 (435)
Q Consensus 312 ~hgG~~s~~Eal~~G~P~l~~P 333 (435)
|.||...+.|-=.+|+|++.+-
T Consensus 350 trcga~m~keiE~~GIPvV~i~ 371 (431)
T TIGR01917 350 TRCGATMVKEIERAGIPVVHIC 371 (431)
T ss_pred hhHHHHHHHHHHHcCCCEEEEe
Confidence 5677777888888999999664
No 378
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=34.02 E-value=2.6e+02 Score=27.64 Aligned_cols=29 Identities=17% Similarity=0.080 Sum_probs=22.2
Q ss_pred CcccCcCEEEeCCcchhHHHHHHHcCCCEEEe
Q 013835 91 GIAFKADAIIANPPAYGHVHVAEALKIPIHIF 122 (435)
Q Consensus 91 ~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~ 122 (435)
+++.+||++|.++. ...+|+++|||++-.
T Consensus 389 i~~~~pDliig~s~---~~~~a~k~giP~~~~ 417 (475)
T PRK14478 389 LKEAKADIMLSGGR---SQFIALKAGMPWLDI 417 (475)
T ss_pred HhhcCCCEEEecCc---hhhhhhhcCCCEEEc
Confidence 34458999999843 357999999999843
No 379
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=33.95 E-value=97 Score=28.21 Aligned_cols=69 Identities=20% Similarity=0.338 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCCchHHHHHHHh-----CCCEE
Q 013835 256 EKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLRA-----ACPTT 330 (435)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~l~I~hgG~~s~~Eal~~-----G~P~l 330 (435)
.+.++.+.+.+++.+..+.+...... ....+ . + ....-...|++|..||=||+.|++.. ..|.+
T Consensus 18 ~~~~~~i~~~l~~~~~~~~~~~t~~~-~~~~~----~-----~-~~~~~~~~d~ivv~GGDGTl~~v~~~l~~~~~~~~l 86 (293)
T TIGR00147 18 NKPLREVIMLLREEGMEIHVRVTWEK-GDAAR----Y-----V-EEARKFGVDTVIAGGGDGTINEVVNALIQLDDIPAL 86 (293)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCc-ccHHH----H-----H-HHHHhcCCCEEEEECCCChHHHHHHHHhcCCCCCcE
Confidence 44566777888877776554332111 00000 0 0 01112457899999999999996643 34445
Q ss_pred -eecCC
Q 013835 331 -IVPFF 335 (435)
Q Consensus 331 -~~P~~ 335 (435)
++|..
T Consensus 87 giiP~G 92 (293)
T TIGR00147 87 GILPLG 92 (293)
T ss_pred EEEcCc
Confidence 48964
No 380
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=33.81 E-value=53 Score=29.11 Aligned_cols=37 Identities=27% Similarity=0.295 Sum_probs=28.3
Q ss_pred HHHHHHHHHCCCeEEEEeCC------CcHHHHHhcCceeEEcc
Q 013835 14 VAIGKRLQDYGHRVRLATHS------NFKDFVLTAGLEFYPLD 50 (435)
Q Consensus 14 ~~la~~L~~rGh~V~~~~~~------~~~~~~~~~g~~~~~i~ 50 (435)
..+|-++++.||+|++.-+. +..+.++++|++...-+
T Consensus 34 a~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD 76 (340)
T COG4007 34 ARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDD 76 (340)
T ss_pred hHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCc
Confidence 45788999999999998543 33567888999887754
No 381
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=33.66 E-value=2.3e+02 Score=25.39 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=23.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCc---HHHHHhcCc
Q 013835 13 FVAIGKRLQDYGHRVRLATHSNF---KDFVLTAGL 44 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~~---~~~~~~~g~ 44 (435)
+..+.+.|+++|+.+.++|.... ...++..|+
T Consensus 114 ~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl 148 (260)
T PLN03243 114 SREFVQALKKHEIPIAVASTRPRRYLERAIEAVGM 148 (260)
T ss_pred HHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCC
Confidence 67788999999999999987542 334455554
No 382
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=33.66 E-value=2.2e+02 Score=21.86 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=39.2
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCC----CcHHHHHhcCceeEEcc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHS----NFKDFVLTAGLEFYPLD 50 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~----~~~~~~~~~g~~~~~i~ 50 (435)
.+.++-.|.....-++..|+..|++|.++... .+.+.+.+.+..++.+.
T Consensus 5 ~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS 57 (122)
T cd02071 5 AKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLS 57 (122)
T ss_pred EecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 46788899999999999999999999999643 34455667788888775
No 383
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=33.44 E-value=55 Score=30.32 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=30.4
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCCCc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF 35 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~ 35 (435)
++.|+.|-.--++.||++|.+||..+-+++.++.
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYg 88 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYG 88 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcC
Confidence 4678999999999999999999999999997763
No 384
>PHA02754 hypothetical protein; Provisional
Probab=33.43 E-value=71 Score=20.72 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=17.5
Q ss_pred HHHhc-CHHHHHHHHHHHHHhhccC
Q 013835 369 INFML-DPKVKERAVELAEAMEKED 392 (435)
Q Consensus 369 i~~ll-~~~~~~~~~~~~~~~~~~~ 392 (435)
|.+++ ++.+.+.+++++..+.+.+
T Consensus 7 i~k~i~eK~Fke~MRelkD~LSe~G 31 (67)
T PHA02754 7 IPKAIMEKDFKEAMRELKDILSEAG 31 (67)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhCc
Confidence 44444 6889999999888887643
No 385
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=33.31 E-value=78 Score=27.66 Aligned_cols=33 Identities=15% Similarity=-0.050 Sum_probs=26.0
Q ss_pred ccCCccchhHHHHHHHHHHHCCCeEEEEeCCCc
Q 013835 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF 35 (435)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~ 35 (435)
..++.|-..-+.+++....++|..|.|++.++.
T Consensus 32 G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~ 64 (234)
T PRK06067 32 GDHGTGKSVLSQQFVYGALKQGKKVYVITTENT 64 (234)
T ss_pred CCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 456778888888888877778999999986543
No 386
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=33.20 E-value=1.1e+02 Score=23.39 Aligned_cols=47 Identities=11% Similarity=0.224 Sum_probs=35.0
Q ss_pred cCCccchhHHHHHHHHHHHCCCeEEEEeCC-CcHHHHHhcCceeEEcc
Q 013835 4 VGTRGDVQPFVAIGKRLQDYGHRVRLATHS-NFKDFVLTAGLEFYPLD 50 (435)
Q Consensus 4 ~~~~GH~~p~~~la~~L~~rGh~V~~~~~~-~~~~~~~~~g~~~~~i~ 50 (435)
+.-.|-..-++..++.++++|..|..+|.. +..+...+.|...+.+|
T Consensus 50 iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~~~l~~~~~~~~~~~~~~p 97 (119)
T cd05017 50 VSYSGNTEETLSAVEQAKERGAKIVAITSGGKLLEMAREHGVPVIIIP 97 (119)
T ss_pred EECCCCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHcCCcEEECC
Confidence 344566677888999999999999888843 34555566788888876
No 387
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.07 E-value=1.9e+02 Score=28.85 Aligned_cols=16 Identities=31% Similarity=0.491 Sum_probs=13.7
Q ss_pred HHHHHHHHCCCeEEEE
Q 013835 15 AIGKRLQDYGHRVRLA 30 (435)
Q Consensus 15 ~la~~L~~rGh~V~~~ 30 (435)
++|+.|.++|++|+..
T Consensus 21 s~a~~L~~~G~~v~~~ 36 (498)
T PRK02006 21 AMARWCARHGARLRVA 36 (498)
T ss_pred HHHHHHHHCCCEEEEE
Confidence 4899999999998765
No 388
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=33.04 E-value=2.1e+02 Score=28.64 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=24.5
Q ss_pred CCcccCcCEEEeCCcchhHHHHHHHcCCCEEEee
Q 013835 90 SGIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 123 (435)
Q Consensus 90 ~~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~ 123 (435)
.+++.+||+|+.++.. ..+|+++|+|++.+.
T Consensus 359 ~i~~~~pdliiG~~~e---r~~a~~lgip~~~i~ 389 (511)
T TIGR01278 359 AIAALEPELVLGTQME---RHSAKRLDIPCGVIS 389 (511)
T ss_pred HHHhcCCCEEEEChHH---HHHHHHcCCCEEEec
Confidence 3456699999999733 668999999998764
No 389
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=32.86 E-value=1.2e+02 Score=27.91 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=13.3
Q ss_pred HHHHHHcCCCEEEeec
Q 013835 109 VHVAEALKIPIHIFFT 124 (435)
Q Consensus 109 ~~~A~~~~iP~v~~~~ 124 (435)
.++|+.+++|++.+..
T Consensus 224 A~~Ak~~~vPv~V~a~ 239 (303)
T TIGR00524 224 AVLAKEFRIPFFVAAP 239 (303)
T ss_pred HHHHHHhCCCEEEecc
Confidence 4788999999998754
No 390
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=32.81 E-value=3.1e+02 Score=23.25 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=24.0
Q ss_pred cCcCEEEe-CCcc-hhHHHHHHHcCCCEEEeeccC
Q 013835 94 FKADAIIA-NPPA-YGHVHVAEALKIPIHIFFTMP 126 (435)
Q Consensus 94 ~~pDlVi~-d~~~-~~~~~~A~~~~iP~v~~~~~~ 126 (435)
..||+||. |+.. ..+..=|.++|||+|++.-+.
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 37999976 5332 345678999999999986443
No 391
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=32.74 E-value=47 Score=29.22 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=29.9
Q ss_pred CCccch-hHHHHHHHHHHHC--CCeEEEEeCCCcHHHHHhcC
Q 013835 5 GTRGDV-QPFVAIGKRLQDY--GHRVRLATHSNFKDFVLTAG 43 (435)
Q Consensus 5 ~~~GH~-~p~~~la~~L~~r--Gh~V~~~~~~~~~~~~~~~g 43 (435)
.|.|+. .-...+++.|+++ |++|.++.++...+.+...+
T Consensus 7 tGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~~~ 48 (234)
T TIGR02700 7 TGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRMYG 48 (234)
T ss_pred eCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhhhh
Confidence 344555 6899999999999 99999998877666665443
No 392
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=32.71 E-value=57 Score=30.38 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=30.1
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCCCc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF 35 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~ 35 (435)
++.|+.|=.--++.|++.|.++|++|.+++.++.
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg 76 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYG 76 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 4678889888899999999999999999998764
No 393
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.67 E-value=20 Score=24.53 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=19.9
Q ss_pred chhHHHHHHHHHHHCCCeEEEEe
Q 013835 9 DVQPFVAIGKRLQDYGHRVRLAT 31 (435)
Q Consensus 9 H~~p~~~la~~L~~rGh~V~~~~ 31 (435)
+-.+++.+...++++|.+|+|+.
T Consensus 30 DSiR~M~L~~~wR~~G~~i~F~~ 52 (74)
T COG3433 30 DSIRMMALLERWRKRGADIDFAQ 52 (74)
T ss_pred hHHHHHHHHHHHHHcCCcccHHH
Confidence 34679999999999999999984
No 394
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=32.55 E-value=2.7e+02 Score=25.17 Aligned_cols=31 Identities=10% Similarity=0.119 Sum_probs=23.1
Q ss_pred CCccchhHHHHHHHHHHHCCCeEEEEeCCCc
Q 013835 5 GTRGDVQPFVAIGKRLQDYGHRVRLATHSNF 35 (435)
Q Consensus 5 ~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~ 35 (435)
++.|=..-+..++..+..+|+.|.+++.+..
T Consensus 84 ~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ 114 (270)
T PRK06731 84 TGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 114 (270)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 4556666677788888888999999976544
No 395
>PRK11519 tyrosine kinase; Provisional
Probab=32.52 E-value=4e+02 Score=28.10 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=25.8
Q ss_pred ccCCccchhHHHHHHHHHHHCCCeEEEEe
Q 013835 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLAT 31 (435)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~V~~~~ 31 (435)
+.|+-|=..-+..||..|+..|++|.++=
T Consensus 534 ~~~geGKTt~a~nLA~~la~~g~rvLlID 562 (719)
T PRK11519 534 VSPSIGKTFVCANLAAVISQTNKRVLLID 562 (719)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 45788888999999999999999999993
No 396
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=32.43 E-value=2.6e+02 Score=22.37 Aligned_cols=31 Identities=23% Similarity=0.166 Sum_probs=26.0
Q ss_pred ccCCccchhHHHHHHHHHHHCCCeEEEEeCC
Q 013835 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATHS 33 (435)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~ 33 (435)
..++.|=...+..++..+.++|++|.++..+
T Consensus 6 G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 6 GVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 4567788888999999999999999998643
No 397
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=32.23 E-value=2.9e+02 Score=23.45 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=23.4
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCc---HHHHHhcCce
Q 013835 13 FVAIGKRLQDYGHRVRLATHSNF---KDFVLTAGLE 45 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~~---~~~~~~~g~~ 45 (435)
+..+.+.|+++|+.+.++|.... ...++..|+.
T Consensus 87 ~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~ 122 (214)
T PRK13288 87 VYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLD 122 (214)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh
Confidence 57788899999999999987643 2334555543
No 398
>CHL00067 rps2 ribosomal protein S2
Probab=32.18 E-value=3.5e+02 Score=23.73 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=24.0
Q ss_pred CcCEEEe-CCcc-hhHHHHHHHcCCCEEEeeccCC
Q 013835 95 KADAIIA-NPPA-YGHVHVAEALKIPIHIFFTMPW 127 (435)
Q Consensus 95 ~pDlVi~-d~~~-~~~~~~A~~~~iP~v~~~~~~~ 127 (435)
.||+||. |+.. ..+..=|.++|||+|++.-+..
T Consensus 161 ~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~ 195 (230)
T CHL00067 161 LPDIVIIIDQQEEYTALRECRKLGIPTISILDTNC 195 (230)
T ss_pred CCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCC
Confidence 6999976 5432 2457789999999999875433
No 399
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=32.01 E-value=2.3e+02 Score=25.67 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=18.4
Q ss_pred HHHHHHHHCCCeEEEEeCCCcHH
Q 013835 15 AIGKRLQDYGHRVRLATHSNFKD 37 (435)
Q Consensus 15 ~la~~L~~rGh~V~~~~~~~~~~ 37 (435)
.+|+.|+++||.|.++..+....
T Consensus 17 s~a~~l~~~g~~v~i~g~d~~~~ 39 (279)
T COG0287 17 SLARALKEAGLVVRIIGRDRSAA 39 (279)
T ss_pred HHHHHHHHcCCeEEEEeecCcHH
Confidence 47899999999999997665443
No 400
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=31.93 E-value=3e+02 Score=25.21 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=27.8
Q ss_pred CccchhHHHHHHHHHHHCCCeEEEEe---CCCc-----HHHHHhcCceeEEcc
Q 013835 6 TRGDVQPFVAIGKRLQDYGHRVRLAT---HSNF-----KDFVLTAGLEFYPLD 50 (435)
Q Consensus 6 ~~GH~~p~~~la~~L~~rGh~V~~~~---~~~~-----~~~~~~~g~~~~~i~ 50 (435)
++||-...+.+.+..+++|-++.+++ .+.. .+.+.+.|+++..+.
T Consensus 125 Th~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~ 177 (301)
T COG1184 125 THSFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIV 177 (301)
T ss_pred EecCcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEe
Confidence 55666777777777777776555553 2222 234556777777765
No 401
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=31.83 E-value=1.1e+02 Score=26.41 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=23.9
Q ss_pred ccchhHHHHHHHHHHHCCCeEEEEeCCC-cHHHH
Q 013835 7 RGDVQPFVAIGKRLQDYGHRVRLATHSN-FKDFV 39 (435)
Q Consensus 7 ~GH~~p~~~la~~L~~rGh~V~~~~~~~-~~~~~ 39 (435)
.|--.-+..++--+-..||+|++++.+. .++.+
T Consensus 39 tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi 72 (235)
T COG2874 39 TGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFI 72 (235)
T ss_pred ccHHHHHHHHHHHHHhCCceEEEEEechhHHHHH
Confidence 4455567788888889999999998764 33444
No 402
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=31.48 E-value=57 Score=31.04 Aligned_cols=67 Identities=22% Similarity=0.255 Sum_probs=45.1
Q ss_pred cccEEEEeCCchHHHHHHHhC-----------------CCEEeecCCCChhhHHHHHHHcCCCCCCCCCC---CCCHHHH
Q 013835 306 QCKAVVHHGGAGTTAAGLRAA-----------------CPTTIVPFFGDQPFWGERVHARGVGPPPIPVD---EFSLPKL 365 (435)
Q Consensus 306 ~~~l~I~hgG~~s~~Eal~~G-----------------~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~---~~~~~~l 365 (435)
.++.+++.||..+.+.|+.++ +|.+.++... +.-..+.+.-+|+|++.++.+ .++.++|
T Consensus 103 ~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L 181 (373)
T PF00282_consen 103 DAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAARILGLGVRKIPTDEDGRMDIEAL 181 (373)
T ss_dssp TSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHHHHTTSEEEEE-BBTTSSB-HHHH
T ss_pred CCceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhcceeeeEEEEecCCcchhhhHHHh
Confidence 378889999988877776432 4667666555 467778888889997445433 2567888
Q ss_pred HHHHHHhc
Q 013835 366 INAINFML 373 (435)
Q Consensus 366 ~~~i~~ll 373 (435)
+++|.+..
T Consensus 182 ~~~l~~~~ 189 (373)
T PF00282_consen 182 EKALEKDI 189 (373)
T ss_dssp HHHHHHHH
T ss_pred hhhhcccc
Confidence 88877643
No 403
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=31.46 E-value=55 Score=27.61 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=23.0
Q ss_pred CccchhHHHHHHHHHHHCCCeEEEEeCCCcHH
Q 013835 6 TRGDVQPFVAIGKRLQDYGHRVRLATHSNFKD 37 (435)
Q Consensus 6 ~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~ 37 (435)
+.|-+.-...+.++|.+.|++|+++.++....
T Consensus 10 s~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~ 41 (187)
T TIGR02852 10 SHCTLEAVMPQLEKLVDEGAEVTPIVSETVQT 41 (187)
T ss_pred HHHHHHHHHHHHHHHHhCcCEEEEEEchhHHH
Confidence 33333334589999999999999997765543
No 404
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=31.43 E-value=87 Score=29.93 Aligned_cols=88 Identities=13% Similarity=0.117 Sum_probs=43.8
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCCchH
Q 013835 239 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGT 318 (435)
Q Consensus 239 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~l~I~hgG~~s 318 (435)
++++++|+.++.... ...++.+.+.++..+..+.+..+-...... ++|. -.-...--..+|++|.=||...
T Consensus 28 ~~r~livt~~~~~~~--~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~----~~v~---~~~~~~~~~~~D~IIaiGGGS~ 98 (382)
T cd08187 28 GKKVLLVYGGGSIKK--NGLYDRVIASLKEAGIEVVELGGVEPNPRL----ETVR---EGIELCKEEKVDFILAVGGGSV 98 (382)
T ss_pred CCEEEEEeCCcHHHh--cCcHHHHHHHHHHcCCeEEEECCccCCCCH----HHHH---HHHHHHHHcCCCEEEEeCChHH
Confidence 344556654333211 123456777887777776655432211111 1110 0000000257899998888633
Q ss_pred HHHH--HH--------------------hCCCEEeecCC
Q 013835 319 TAAG--LR--------------------AACPTTIVPFF 335 (435)
Q Consensus 319 ~~Ea--l~--------------------~G~P~l~~P~~ 335 (435)
+--| ++ .++|+|.+|..
T Consensus 99 iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 137 (382)
T cd08187 99 IDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTL 137 (382)
T ss_pred HHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCC
Confidence 3222 22 26899999964
No 405
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=31.41 E-value=39 Score=25.83 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCCcHHHHHh
Q 013835 11 QPFVAIGKRLQDYGHRVRLATHSNFKDFVLT 41 (435)
Q Consensus 11 ~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~ 41 (435)
-+...++-.+.-+||+++++-+..+.+.+..
T Consensus 10 k~L~eIll~FilrGHKT~vyLP~yY~~~~~~ 40 (122)
T PF14626_consen 10 KALVEILLHFILRGHKTVVYLPKYYKNYVDD 40 (122)
T ss_pred HHHHHHHHHHHhccCeeEEEChHHHhccccc
Confidence 4566666777789999999998776655443
No 406
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=31.30 E-value=55 Score=32.80 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=24.8
Q ss_pred CcccCcCEEEeCCcchhHHHHHHHcCCCEEEeec
Q 013835 91 GIAFKADAIIANPPAYGHVHVAEALKIPIHIFFT 124 (435)
Q Consensus 91 ~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~~ 124 (435)
+++...++||.|... ..+|+++|++.|.+.+
T Consensus 141 l~~~G~~~viG~~~~---~~~A~~~gl~~ili~s 171 (526)
T TIGR02329 141 LRARGIGAVVGAGLI---TDLAEQAGLHGVFLYS 171 (526)
T ss_pred HHHCCCCEEECChHH---HHHHHHcCCceEEEec
Confidence 455689999999743 5799999999998753
No 407
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=31.17 E-value=50 Score=28.95 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=25.9
Q ss_pred CcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEE
Q 013835 241 KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIIN 276 (435)
Q Consensus 241 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~ 276 (435)
..++|.|.-......+++++...+.+.+.++.+++.
T Consensus 151 ~~~~vgF~~e~~~~~~~l~~~a~~kl~~~~~d~vva 186 (229)
T PRK06732 151 NITLVGFKLLVNVSKEELIKVARASLIKNQADYILA 186 (229)
T ss_pred CcEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 366777766554445678888888888888888876
No 408
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=31.13 E-value=3.8e+02 Score=23.76 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=25.1
Q ss_pred EEEeCCchHHHHHHHhCCCEEee-c-CC---CChhhHHHHHH
Q 013835 310 VVHHGGAGTTAAGLRAACPTTIV-P-FF---GDQPFWGERVH 346 (435)
Q Consensus 310 ~I~hgG~~s~~Eal~~G~P~l~~-P-~~---~dQ~~na~~v~ 346 (435)
.|+--+..-+.||+..|.|-+++ + .. .|-..-+..++
T Consensus 153 ~I~G~~g~ll~e~~~r~i~a~~ll~et~~~~PDP~AAa~vve 194 (244)
T COG1938 153 TIVGPSGALLNECLKRGIPALVLLAETFGDRPDPRAAARVVE 194 (244)
T ss_pred eeecccHHHHHHHHHcCCCeEEEeccccCCCCChHHHHHHHH
Confidence 55555667899999999999886 2 22 35445555555
No 409
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=30.98 E-value=99 Score=23.98 Aligned_cols=37 Identities=27% Similarity=0.350 Sum_probs=31.2
Q ss_pred HHHHHHHHHCCCeEEEEe--CCCcHHHHHhcCceeEEcc
Q 013835 14 VAIGKRLQDYGHRVRLAT--HSNFKDFVLTAGLEFYPLD 50 (435)
Q Consensus 14 ~~la~~L~~rGh~V~~~~--~~~~~~~~~~~g~~~~~i~ 50 (435)
..+++.|++.|.+|.++. .+.....++..|+.++..+
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~ 93 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAP 93 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecC
Confidence 568899999999999996 3455678899999999986
No 410
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=30.83 E-value=2.4e+02 Score=25.20 Aligned_cols=16 Identities=25% Similarity=0.162 Sum_probs=13.2
Q ss_pred HHHHHHcCCCEEEeec
Q 013835 109 VHVAEALKIPIHIFFT 124 (435)
Q Consensus 109 ~~~A~~~~iP~v~~~~ 124 (435)
.++|+.+++|++.++.
T Consensus 178 Al~A~~~~vPv~V~~~ 193 (253)
T PRK06372 178 ALCARYLKKPFYSLTI 193 (253)
T ss_pred HHHHHHcCCCEEEEee
Confidence 4789999999998653
No 411
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=30.83 E-value=1.5e+02 Score=24.56 Aligned_cols=92 Identities=13% Similarity=0.082 Sum_probs=49.5
Q ss_pred CCcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh--cccccEEEEe----
Q 013835 240 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL--FLQCKAVVHH---- 313 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~--l~~~~l~I~h---- 313 (435)
.+.||++.- .+.....+..+.+-+.+.+.+...+. .........+..++ -...|+-..++ +.+||++|-.
T Consensus 4 ~~~IYLAGP-~F~~~~i~~~d~lkall~~~gf~~~~--P~d~~~~~~~~~p~-~~a~~i~e~d~~~i~~aD~vla~ld~f 79 (172)
T COG3613 4 KKKIYLAGP-VFRPDEIELRDELKALLLEAGFEVLS--PFDEAEPIAETGPN-ETAEKIYEADIKLIDQADIVLANLDPF 79 (172)
T ss_pred cceEEEecC-cCCHHHHHHHHHHHHHHHHcCCeeeC--cchhccCccccCcc-HHHHHHHHHHHHHHhhcCEEEEecCCC
Confidence 347787765 55555555666666666665655442 11111112121111 11122222223 7888888842
Q ss_pred ---CCchHHHH---HHHhCCCEEeecCC
Q 013835 314 ---GGAGTTAA---GLRAACPTTIVPFF 335 (435)
Q Consensus 314 ---gG~~s~~E---al~~G~P~l~~P~~ 335 (435)
--.||+.| |++.|+|+..+-.-
T Consensus 80 r~~~DsGTa~E~GYa~AlgKPv~~~~~d 107 (172)
T COG3613 80 RPDPDSGTAFELGYAIALGKPVYAYRKD 107 (172)
T ss_pred CCCCCCcchHHHHHHHHcCCceEEEeec
Confidence 22567777 59999999987643
No 412
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=30.71 E-value=63 Score=24.21 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHCCCeEEEEeC
Q 013835 11 QPFVAIGKRLQDYGHRVRLATH 32 (435)
Q Consensus 11 ~p~~~la~~L~~rGh~V~~~~~ 32 (435)
.|.+.|++.|.++|.+|.+.=+
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP 38 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDP 38 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-T
T ss_pred CHHHHHHHHHHHCCCEEEEECC
Confidence 6899999999999999877744
No 413
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=30.63 E-value=4e+02 Score=26.72 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=23.6
Q ss_pred CcccCcCEEEeCCcchhHHHHHHHcCCCEEEee
Q 013835 91 GIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 123 (435)
Q Consensus 91 ~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~ 123 (435)
+++.+||+|+.++.- ..+|+++|||++.++
T Consensus 370 I~~~~pdliiGs~~e---r~ia~~lgiP~~~is 399 (513)
T CHL00076 370 IARVEPSAIFGTQME---RHIGKRLDIPCGVIS 399 (513)
T ss_pred HHhcCCCEEEECchh---hHHHHHhCCCEEEee
Confidence 455689999999743 567899999998764
No 414
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=30.60 E-value=3.3e+02 Score=26.43 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=20.8
Q ss_pred CcCEEEeCCcchhHHHHHHHcCCCEEEe
Q 013835 95 KADAIIANPPAYGHVHVAEALKIPIHIF 122 (435)
Q Consensus 95 ~pDlVi~d~~~~~~~~~A~~~~iP~v~~ 122 (435)
+||++|.++.. ..+|+++|+|.+-+
T Consensus 360 ~~dllig~s~~---~~~A~~~~ip~~~~ 384 (417)
T cd01966 360 EADLLVTNSHG---RQAAERLGIPLLRA 384 (417)
T ss_pred cCCEEEEcchh---HHHHHhcCCCEEEe
Confidence 49999998654 56999999999865
No 415
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=30.44 E-value=1.9e+02 Score=26.91 Aligned_cols=38 Identities=8% Similarity=0.054 Sum_probs=23.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCC---CcH------HHHHhcCceeEEcc
Q 013835 13 FVAIGKRLQDYGHRVRLATHS---NFK------DFVLTAGLEFYPLD 50 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~---~~~------~~~~~~g~~~~~i~ 50 (435)
.+.+.+..+++|.++.+++.+ ... ..+.+.|+++.-+.
T Consensus 157 al~~l~~A~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GI~vtlI~ 203 (329)
T PRK06371 157 ALAPIRIAHRNGKNIFVFVDETRPRLQGARLTAWELAQEGIDHAIIA 203 (329)
T ss_pred HHHHHHHHHHcCCeeEEEECCCCCcchHHHHHHHHHHHCCCCEEEEc
Confidence 456677777888877777533 111 23445688777664
No 416
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=30.29 E-value=1.7e+02 Score=27.46 Aligned_cols=38 Identities=11% Similarity=0.106 Sum_probs=23.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCC---CcH------HHHHhcCceeEEcc
Q 013835 13 FVAIGKRLQDYGHRVRLATHS---NFK------DFVLTAGLEFYPLD 50 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~---~~~------~~~~~~g~~~~~i~ 50 (435)
.+.+.+..+++|-+..+++.+ ... ..+.+.|+++.-+.
T Consensus 167 al~~i~~A~~~gk~~~V~v~EsRP~~qG~~lta~eL~~~GI~vtlI~ 213 (344)
T PRK05720 167 ALAPIYAAKEKGIDIHVYADETRPRLQGARLTAWELYQAGIDVTVIT 213 (344)
T ss_pred HHHHHHHHHHcCCceEEEEcCCCChhhhHHHHHHHHHHCCCCEEEEc
Confidence 456777777788777666533 211 23455677776664
No 417
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=30.22 E-value=4.9e+02 Score=24.81 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=26.4
Q ss_pred cCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHH
Q 013835 4 VGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKD 37 (435)
Q Consensus 4 ~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~ 37 (435)
-|+.|=..-++.+|..+..+|.+|.+++.++..+
T Consensus 90 ~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~ 123 (372)
T cd01121 90 DPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPE 123 (372)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHH
Confidence 3566777788899999998889999998665443
No 418
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=30.19 E-value=70 Score=29.94 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=30.7
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcH
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFK 36 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~ 36 (435)
++.|+.|=.--++.||+.|.++|++|.+++.++..
T Consensus 64 itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 98 (338)
T PRK01906 64 VTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYGA 98 (338)
T ss_pred ccCCCCChHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 46788898888999999999999999999987644
No 419
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=30.04 E-value=39 Score=14.97 Aligned_cols=12 Identities=8% Similarity=0.158 Sum_probs=9.5
Q ss_pred chHHHHHHHhCC
Q 013835 316 AGTTAAGLRAAC 327 (435)
Q Consensus 316 ~~s~~Eal~~G~ 327 (435)
+.|++||+..|.
T Consensus 3 mdsllealqtg~ 14 (15)
T PF06345_consen 3 MDSLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHHHST
T ss_pred HHHHHHHHHccC
Confidence 468899998875
No 420
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=29.98 E-value=99 Score=24.17 Aligned_cols=40 Identities=5% Similarity=0.213 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCCcH------------------HHHHhcCceeEEccc
Q 013835 12 PFVAIGKRLQDYGHRVRLATHSNFK------------------DFVLTAGLEFYPLDM 51 (435)
Q Consensus 12 p~~~la~~L~~rGh~V~~~~~~~~~------------------~~~~~~g~~~~~i~~ 51 (435)
......++|.+.||.|+++|..... +.+...+++|..+-+
T Consensus 28 ~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~ 85 (126)
T TIGR01689 28 AVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYV 85 (126)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEe
Confidence 4566677777899999999865332 233457888777653
No 421
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=29.65 E-value=85 Score=26.32 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCCcHHHHH
Q 013835 11 QPFVAIGKRLQDYGHRVRLATHSNFKDFVL 40 (435)
Q Consensus 11 ~p~~~la~~L~~rGh~V~~~~~~~~~~~~~ 40 (435)
.-...+++.|.++|++|.++.++...+.+.
T Consensus 13 ~ka~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 13 IYGIRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred HHHHHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 345788999999999999998877666654
No 422
>PRK03094 hypothetical protein; Provisional
Probab=29.62 E-value=52 Score=23.30 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=15.3
Q ss_pred HHHHHHHHHHCCCeEEEEeC
Q 013835 13 FVAIGKRLQDYGHRVRLATH 32 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~ 32 (435)
+-.+.++|+++||+|.=+..
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred cHHHHHHHHHCCCEEEecCc
Confidence 34678899999999976643
No 423
>PRK10586 putative oxidoreductase; Provisional
Probab=29.36 E-value=1.6e+02 Score=27.93 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=46.1
Q ss_pred HHHHHHHc-C-CCcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhccccc
Q 013835 231 SLVKWLEA-G-SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCK 308 (435)
Q Consensus 231 ~l~~~~~~-~-~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 308 (435)
.+.+++.. + +++++|+.+.. .+.....+.+.+++.+..+++..+....+.+.++ . ...-..+|
T Consensus 24 ~l~~~~~~~g~~~~lvv~g~~~----~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~v~~l------~-----~~~~~~~d 88 (362)
T PRK10586 24 HLHDFFTDEQLSRAVWIYGERA----IAAAQPYLPPAFELPGAKHILFRGHCSESDVAQL------A-----AASGDDRQ 88 (362)
T ss_pred HHHHHHHhcCCCeEEEEEChHH----HHHHHHHHHHHHHHcCCeEEEeCCCCCHHHHHHH------H-----HHhccCCC
Confidence 34445543 3 44555553221 2223344556677667666555433221111100 0 00124679
Q ss_pred EEEEeCCchHHHHH----HHhCCCEEeecCC
Q 013835 309 AVVHHGGAGTTAAG----LRAACPTTIVPFF 335 (435)
Q Consensus 309 l~I~hgG~~s~~Ea----l~~G~P~l~~P~~ 335 (435)
++|.=||..++--| ...++|++.+|..
T Consensus 89 ~iiavGGGs~iD~aK~~a~~~~~p~i~vPT~ 119 (362)
T PRK10586 89 VVIGVGGGALLDTAKALARRLGLPFVAIPTI 119 (362)
T ss_pred EEEEecCcHHHHHHHHHHhhcCCCEEEEeCC
Confidence 99999987544333 2348999999964
No 424
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=29.12 E-value=4.1e+02 Score=25.47 Aligned_cols=105 Identities=15% Similarity=0.056 Sum_probs=65.9
Q ss_pred EEcCCCChhhhcccccEEEEeCCchHHHHHHHhCCCEEeecCCCChhhHHHHH----HHcCCCCCCCCCCCCCHHHHHHH
Q 013835 293 YLLDNIPHDWLFLQCKAVVHHGGAGTTAAGLRAACPTTIVPFFGDQPFWGERV----HARGVGPPPIPVDEFSLPKLINA 368 (435)
Q Consensus 293 ~~~~~~p~~~~l~~~~l~I~hgG~~s~~Eal~~G~P~l~~P~~~dQ~~na~~v----~~~g~G~~~l~~~~~~~~~l~~~ 368 (435)
.+.+..+..+++..+|++||-=.. .+.|.+..-+|++..-...||....+-. +...=|- ++. +.+++.++
T Consensus 273 ~vs~~~di~dll~~sDiLITDySS-v~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~-~~~----~~~~li~a 346 (388)
T COG1887 273 DVSDNADINDLLLVSDILITDYSS-VIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGE-VVE----TQEELIDA 346 (388)
T ss_pred ecccchhHHHHHhhhCEEEeechH-HHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCcc-ccc----cHHHHHHH
Confidence 344456777779999999998776 8999999999999986666666222211 1112231 222 66888888
Q ss_pred HHHhc-C-HHHHHHHHHHHHHhhcc---CcHHHHHHHHHH
Q 013835 369 INFML-D-PKVKERAVELAEAMEKE---DGVTGAVKAFFK 403 (435)
Q Consensus 369 i~~ll-~-~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~ 403 (435)
|...+ + ..+.++.+...+.+... ...++.++.+.+
T Consensus 347 i~~~~~~~~~~~~k~~~~~~~~~~~~dg~ss~ri~~~i~~ 386 (388)
T COG1887 347 IKPYDEDGNYDLEKLRVFNDKFNSYEDGRSSERILKLIFK 386 (388)
T ss_pred HHhhhcccchhHHHHHHHHHhhcccccccHHHHHHHHHhc
Confidence 88877 3 33444444444444443 234566665543
No 425
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=28.81 E-value=2.7e+02 Score=25.26 Aligned_cols=76 Identities=9% Similarity=0.040 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh---cccccEEEEeCCc--------hH------
Q 013835 256 EKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL---FLQCKAVVHHGGA--------GT------ 318 (435)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~---l~~~~l~I~hgG~--------~s------ 318 (435)
+.+++.+++.+. .+..+++.+.... ..... -++..++......+ +.++|++|.-||. .+
T Consensus 15 e~~l~~~l~~l~-~~~~~~v~s~~p~--~~~~~-~~v~~~~r~~~~~~~~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~ 90 (298)
T TIGR03609 15 EALLAALLRELP-PGVEPTVLSNDPA--ETAKL-YGVEAVNRRSLLAVLRALRRADVVIWGGGSLLQDVTSFRSLLYYLG 90 (298)
T ss_pred HHHHHHHHHhcC-CCCeEEEecCChH--HHHhh-cCceEEccCCHHHHHHHHHHCCEEEECCcccccCCcccccHHHHHH
Confidence 445555554443 2344554443221 11111 14444444443333 7899999987773 11
Q ss_pred -HHHHHHhCCCEEeecCC
Q 013835 319 -TAAGLRAACPTTIVPFF 335 (435)
Q Consensus 319 -~~Eal~~G~P~l~~P~~ 335 (435)
+.-|...|+|++.++..
T Consensus 91 ~~~~a~~~~k~~~~~g~g 108 (298)
T TIGR03609 91 LMRLARLFGKPVILWGQG 108 (298)
T ss_pred HHHHHHHcCCCEEEEecc
Confidence 23355679999999865
No 426
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=28.71 E-value=1.4e+02 Score=25.73 Aligned_cols=49 Identities=12% Similarity=-0.061 Sum_probs=34.3
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCC----CcHHHHHhcCceeEEcc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHS----NFKDFVLTAGLEFYPLD 50 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~----~~~~~~~~~g~~~~~i~ 50 (435)
.+.++-.|-....=++..|..+|++|+++..+ ++.+.+.+.+..++.+.
T Consensus 94 ~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~lS 146 (213)
T cd02069 94 ATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLS 146 (213)
T ss_pred EeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 45666778888877888888888888888532 34455566677777664
No 427
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=28.62 E-value=1.9e+02 Score=24.78 Aligned_cols=81 Identities=14% Similarity=-0.037 Sum_probs=39.3
Q ss_pred CcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCC--CC-CCCceEEcCCCChhh-hcccccEEEE-eCC
Q 013835 241 KPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNL--AE-PKDSIYLLDNIPHDW-LFLQCKAVVH-HGG 315 (435)
Q Consensus 241 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~--~~-~~~~v~~~~~~p~~~-~l~~~~l~I~-hgG 315 (435)
..++++.|..+ ..+...+.....+-+++=.......+.- .. ....+++..+.-... +..++|+||. -||
T Consensus 47 g~~V~tGG~~G------iMea~~~gA~~~gg~~vGi~p~~~~~~e~~~~~~~~l~~~~~~~~Rk~~~~~~ada~V~~pGG 120 (205)
T COG1611 47 GLLVITGGGPG------VMEAVARGALEAGGLVVGILPGLLHEQEPPNYEVIELITGMDFAERKRAMVRSADAFIVLPGG 120 (205)
T ss_pred CcEEEeCCchh------hhhHHHHHHHHcCCeEEEecCCCchhhccCccccceeeecCCHHHHHHHHHHhCCEEEEeCCC
Confidence 36666666543 2344555555556555533322221111 11 112222222332333 3789998775 566
Q ss_pred chHHHHH---HHhCC
Q 013835 316 AGTTAAG---LRAAC 327 (435)
Q Consensus 316 ~~s~~Ea---l~~G~ 327 (435)
.||+-|. +..+.
T Consensus 121 ~GTleEl~e~lt~~q 135 (205)
T COG1611 121 FGTLEELFEALTLGQ 135 (205)
T ss_pred cchHHHHHHHHHHhh
Confidence 8997665 44444
No 428
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=28.41 E-value=75 Score=25.16 Aligned_cols=48 Identities=8% Similarity=0.104 Sum_probs=37.5
Q ss_pred ccCCccchhHHHHHHHHHHHCCCeEEEEeC----CCcHHHHHhcCceeEEcc
Q 013835 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATH----SNFKDFVLTAGLEFYPLD 50 (435)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~V~~~~~----~~~~~~~~~~g~~~~~i~ 50 (435)
+.++-+|-.----++..|.+.|++|+.+.. +.+.+.+.+.+...+.+.
T Consensus 8 tv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS 59 (134)
T TIGR01501 8 VIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVS 59 (134)
T ss_pred EecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 456778888888889999999999999954 345556667788888875
No 429
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=28.40 E-value=1.4e+02 Score=28.12 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=42.9
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCCchH
Q 013835 239 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGT 318 (435)
Q Consensus 239 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~l~I~hgG~~s 318 (435)
++++++|+-++..... ..++.+.+.++..+..+.+..+-...... +++ .-.-...--..+|++|.=||..+
T Consensus 25 g~r~lvVt~~~~~~~~--g~~~~v~~~L~~~g~~~~~~~~v~~~p~~----~~v---~~~~~~~~~~~~D~IIavGGGSv 95 (357)
T cd08181 25 GKRALIVTGKSSAKKN--GSLDDVTKALEELGIEYEIFDEVEENPSL----ETI---MEAVEIAKKFNADFVIGIGGGSP 95 (357)
T ss_pred CCEEEEEeCCchHhhc--CcHHHHHHHHHHcCCeEEEeCCCCCCcCH----HHH---HHHHHHHHhcCCCEEEEeCCchH
Confidence 3445555544432211 13455677777777766655321110000 000 00000000256799998888744
Q ss_pred HHHH--HH-------------------hCCCEEeecCC
Q 013835 319 TAAG--LR-------------------AACPTTIVPFF 335 (435)
Q Consensus 319 ~~Ea--l~-------------------~G~P~l~~P~~ 335 (435)
+--| ++ .++|++.+|..
T Consensus 96 iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTt 133 (357)
T cd08181 96 LDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTT 133 (357)
T ss_pred HHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCC
Confidence 3332 11 27899999965
No 430
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=28.13 E-value=2.8e+02 Score=25.42 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=26.0
Q ss_pred ccCCccchhHHHHHHHHHHHCCCeEEEEeCC
Q 013835 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATHS 33 (435)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~ 33 (435)
..++.|=..-+..++..+.++|+.|.++..+
T Consensus 41 G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D 71 (300)
T TIGR00750 41 GTPGAGKSTLLEALGMELRRRGLKVAVIAVD 71 (300)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4577888888999999999999999988644
No 431
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=28.00 E-value=78 Score=29.48 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=29.9
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCCCc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNF 35 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~ 35 (435)
++.|+.|=.--+..|++.|.++|++|.+++.++.
T Consensus 57 i~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg 90 (325)
T PRK00652 57 ITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYG 90 (325)
T ss_pred eeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 3568889999999999999999999999997763
No 432
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=27.76 E-value=85 Score=28.95 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=25.5
Q ss_pred HHHHHHHHCCCeEEEEeCCCcHHHHHhcCceeEE
Q 013835 15 AIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYP 48 (435)
Q Consensus 15 ~la~~L~~rGh~V~~~~~~~~~~~~~~~g~~~~~ 48 (435)
.+|..|.+.||+|++++.+. .+.+...|+....
T Consensus 19 ~lA~~L~~~g~~V~~~~r~~-~~~~~~~g~~~~~ 51 (313)
T PRK06249 19 FYGAMLARAGFDVHFLLRSD-YEAVRENGLQVDS 51 (313)
T ss_pred HHHHHHHHCCCeEEEEEeCC-HHHHHhCCeEEEe
Confidence 46888999999999998765 4566677876544
No 433
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=27.67 E-value=56 Score=23.15 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=16.5
Q ss_pred HHHHHHHHHHCCCeEEEEeCC
Q 013835 13 FVAIGKRLQDYGHRVRLATHS 33 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~ 33 (435)
+-.+.++|+++||+|+=+...
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENE 30 (80)
T ss_pred chHHHHHHHHCCCEEEecCCc
Confidence 456788999999999887644
No 434
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=27.61 E-value=76 Score=24.55 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=24.2
Q ss_pred cccEEEEeCCchHHHHHHHh----C-----CCEEeecCCC
Q 013835 306 QCKAVVHHGGAGTTAAGLRA----A-----CPTTIVPFFG 336 (435)
Q Consensus 306 ~~~l~I~hgG~~s~~Eal~~----G-----~P~l~~P~~~ 336 (435)
..|.+|.-||-||+.|++-. + .|+.++|...
T Consensus 49 ~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GT 88 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGT 88 (124)
T ss_pred cCCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCC
Confidence 46789999999998888542 3 6888999765
No 435
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=27.56 E-value=3.2e+02 Score=27.03 Aligned_cols=91 Identities=15% Similarity=0.229 Sum_probs=50.7
Q ss_pred EEcCCCChhhh---cccccEEEE---eCCchH-HHHHHHhCCC---EEeecCCCChhhHHHHHHHcC-CCCCCCCCCCCC
Q 013835 293 YLLDNIPHDWL---FLQCKAVVH---HGGAGT-TAAGLRAACP---TTIVPFFGDQPFWGERVHARG-VGPPPIPVDEFS 361 (435)
Q Consensus 293 ~~~~~~p~~~~---l~~~~l~I~---hgG~~s-~~Eal~~G~P---~l~~P~~~dQ~~na~~v~~~g-~G~~~l~~~~~~ 361 (435)
.+...++..++ +..||+++. ..|+|. ..|-+++..+ +|++..+. ...+.++ .++ .+++ .+
T Consensus 356 ~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefa------Gaa~~L~~~al-~VNP--~d 426 (474)
T PF00982_consen 356 YIYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFA------GAAEQLSEAAL-LVNP--WD 426 (474)
T ss_dssp EE-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-TS--EEEEETTB------GGGGT-TTS-E-EE-T--T-
T ss_pred EEecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecCCCCceEeeccC------CHHHHcCCccE-EECC--CC
Confidence 34445777777 799998884 558876 5788888776 45554332 2233455 335 5554 47
Q ss_pred HHHHHHHHHHhc--C-HHHHHHHHHHHHHhhccC
Q 013835 362 LPKLINAINFML--D-PKVKERAVELAEAMEKED 392 (435)
Q Consensus 362 ~~~l~~~i~~ll--~-~~~~~~~~~~~~~~~~~~ 392 (435)
.++++++|.+.| . ++-+.+.+++.+.+...+
T Consensus 427 ~~~~A~ai~~AL~M~~~Er~~r~~~~~~~v~~~~ 460 (474)
T PF00982_consen 427 IEEVADAIHEALTMPPEERKERHARLREYVREHD 460 (474)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhCC
Confidence 899999999988 3 456666666666666544
No 436
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=27.28 E-value=4.5e+02 Score=23.42 Aligned_cols=32 Identities=16% Similarity=0.080 Sum_probs=25.8
Q ss_pred ccCCccchhHHHHHHHHHHHCCCeEEEEeCCC
Q 013835 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (435)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~ 34 (435)
..|+.|=..-++.+|...+++|..|.|++.+.
T Consensus 43 G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 43 GVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 34677888888888888888899999998653
No 437
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=27.26 E-value=2.8e+02 Score=21.10 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHC--CCeEEEEeCCCcHHHHHh-cCceeEEc
Q 013835 11 QPFVAIGKRLQDY--GHRVRLATHSNFKDFVLT-AGLEFYPL 49 (435)
Q Consensus 11 ~p~~~la~~L~~r--Gh~V~~~~~~~~~~~~~~-~g~~~~~i 49 (435)
.-+.++++.|.+- |+++. .|.+ -.+.+++ .|+++..+
T Consensus 12 ~~~~~~a~~~~~ll~Gf~i~-AT~g-Ta~~L~~~~Gi~v~~v 51 (115)
T cd01422 12 EDLVEFVKQHQELLSRHRLV-ATGT-TGLLIQEATGLTVNRM 51 (115)
T ss_pred HHHHHHHHHHHHHhcCCEEE-Eech-HHHHHHHhhCCcEEEE
Confidence 4578899999998 99984 5544 3466666 88877765
No 438
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=27.26 E-value=86 Score=28.98 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=30.0
Q ss_pred cccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcH
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFK 36 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~ 36 (435)
++.|+.|=.--.+.|++.|.++|++|.+++.++..
T Consensus 36 itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 70 (311)
T TIGR00682 36 LSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGS 70 (311)
T ss_pred cccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 35688888888999999999999999999977643
No 439
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=27.24 E-value=59 Score=31.97 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=24.3
Q ss_pred HHHHHHHHHCCCeEEEEeCCCcHHHHHhcCceeEEcc
Q 013835 14 VAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLD 50 (435)
Q Consensus 14 ~~la~~L~~rGh~V~~~~~~~~~~~~~~~g~~~~~i~ 50 (435)
.+||+++..+|++||+++.+.. .-...|++++.+.
T Consensus 286 ~alA~aa~~~GA~VtlI~Gp~~--~~~p~~v~~i~V~ 320 (475)
T PRK13982 286 FAIAAAAAAAGAEVTLISGPVD--LADPQGVKVIHVE 320 (475)
T ss_pred HHHHHHHHHCCCcEEEEeCCcC--CCCCCCceEEEec
Confidence 6789999999999999986531 1123456655553
No 440
>KOG3125 consensus Thymidine kinase [Nucleotide transport and metabolism]
Probab=27.13 E-value=4e+02 Score=22.77 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=56.7
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCCchH
Q 013835 239 GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGT 318 (435)
Q Consensus 239 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~l~I~hgG~~s 318 (435)
.++.|-|-+|-++....-+++..+ +.....+.++++.....+- + -.++.++||+|...
T Consensus 25 t~G~i~vI~gPMfSGKTt~LLrr~-r~~~~~grrv~liK~~kDT----------R-----------y~~~si~Thdg~~~ 82 (234)
T KOG3125|consen 25 TRGTIHVILGPMFSGKTTELLRRI-RREIIAGRRVLLIKYAKDT----------R-----------YESSSIVTHDGIEM 82 (234)
T ss_pred CCceEEEEeccccCcchHHHHHHH-HHHHhcCceEEEEEecCCc----------c-----------cchheeEeccCCcc
Confidence 456888888998777666676644 3334458888877543221 0 23577788888622
Q ss_pred --------------HHHHHHhCCCEEeec---CCCChhhHHHHHHH-cCC
Q 013835 319 --------------TAAGLRAACPTTIVP---FFGDQPFWGERVHA-RGV 350 (435)
Q Consensus 319 --------------~~Eal~~G~P~l~~P---~~~dQ~~na~~v~~-~g~ 350 (435)
-.+++...+-+|.+- +++||.+-++-+.. .|.
T Consensus 83 ~c~~lp~a~~~s~f~~d~~~~~vdVigIDEaQFf~dl~efc~evAd~~Gk 132 (234)
T KOG3125|consen 83 PCWALPDASFLSEFGKDALNGDVDVIGIDEAQFFGDLYEFCREVADVHGK 132 (234)
T ss_pred cccccCCchhHHHHHHHHhcCcceEEEecHHHHhHHHHHHHHHHHhccCC
Confidence 223444557777775 33588888887776 563
No 441
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=27.09 E-value=54 Score=27.54 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=25.0
Q ss_pred chhHHHHHHHHHHHCCCeEEEEeCCCcHHHHH
Q 013835 9 DVQPFVAIGKRLQDYGHRVRLATHSNFKDFVL 40 (435)
Q Consensus 9 H~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~ 40 (435)
-..-...+.+.|+++|++|.++.++...+.+.
T Consensus 13 aa~~~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 13 AAYKAADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 34457889999999999999997776655544
No 442
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=27.08 E-value=1.4e+02 Score=24.97 Aligned_cols=24 Identities=17% Similarity=0.005 Sum_probs=16.0
Q ss_pred HHHHHHHhCCCEEeecCCCChhhHH
Q 013835 318 TTAAGLRAACPTTIVPFFGDQPFWG 342 (435)
Q Consensus 318 s~~Eal~~G~P~l~~P~~~dQ~~na 342 (435)
.+.+++..++|++.+-.. -|..+.
T Consensus 63 ~i~~~~~~~~PvlGIC~G-~Qlla~ 86 (184)
T cd01743 63 EIIRALAGKVPILGVCLG-HQAIAE 86 (184)
T ss_pred HHHHHHhcCCCEEEECHh-HHHHHH
Confidence 456667789999988743 354444
No 443
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=27.05 E-value=5.4e+02 Score=24.32 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=13.3
Q ss_pred HHHHHHcCCCEEEeec
Q 013835 109 VHVAEALKIPIHIFFT 124 (435)
Q Consensus 109 ~~~A~~~~iP~v~~~~ 124 (435)
.++|+.+|+|++...+
T Consensus 265 A~~Ak~~~vPfyV~Ap 280 (356)
T PRK08334 265 AVLAKEHGIPFFTVAP 280 (356)
T ss_pred HHHHHHhCCCEEEEcc
Confidence 4789999999998763
No 444
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.04 E-value=63 Score=23.70 Aligned_cols=29 Identities=28% Similarity=0.199 Sum_probs=21.2
Q ss_pred CcCEEEe--CCcch----hHHHHHHHcCCCEEEee
Q 013835 95 KADAIIA--NPPAY----GHVHVAEALKIPIHIFF 123 (435)
Q Consensus 95 ~pDlVi~--d~~~~----~~~~~A~~~~iP~v~~~ 123 (435)
++|+||. |.... .+...|++.++|+++..
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 7899974 54332 34567899999999975
No 445
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=27.02 E-value=2.8e+02 Score=25.59 Aligned_cols=41 Identities=15% Similarity=0.108 Sum_probs=33.7
Q ss_pred cccCCccchhHHHHHHHHHHHC--CCeEEEEeCCCcHHHHHhc
Q 013835 2 LIVGTRGDVQPFVAIGKRLQDY--GHRVRLATHSNFKDFVLTA 42 (435)
Q Consensus 2 ~~~~~~GH~~p~~~la~~L~~r--Gh~V~~~~~~~~~~~~~~~ 42 (435)
+-+++.|++.-+.++.+.|+++ +.+|++++...+....+..
T Consensus 6 i~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~ 48 (322)
T PRK10964 6 VKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWH 48 (322)
T ss_pred EeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcC
Confidence 4467889999999999999986 8999999988776666533
No 446
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.00 E-value=90 Score=27.95 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=25.0
Q ss_pred ccccEEEEeCCchHHHHHHH----hCCCEEeecC
Q 013835 305 LQCKAVVHHGGAGTTAAGLR----AACPTTIVPF 334 (435)
Q Consensus 305 ~~~~l~I~hgG~~s~~Eal~----~G~P~l~~P~ 334 (435)
..+|++|+=||=||++.|+. .++|++.+-.
T Consensus 32 ~~~D~vi~iGGDGT~L~a~~~~~~~~iPilGIN~ 65 (259)
T PRK00561 32 DGADYLFVLGGDGFFVSTAANYNCAGCKVVGINT 65 (259)
T ss_pred CCCCEEEEECCcHHHHHHHHHhcCCCCcEEEEec
Confidence 45899999999999999875 4689987763
No 447
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=26.97 E-value=3e+02 Score=23.16 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=36.4
Q ss_pred CCcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhh-------cccccEEEE
Q 013835 240 SKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWL-------FLQCKAVVH 312 (435)
Q Consensus 240 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~-------l~~~~l~I~ 312 (435)
+++-||+=-|.+. +=..+.+.+...|..+.+..|+... ..|.++.+.....-.++ ++.+|++|+
T Consensus 18 D~VR~ItN~SSG~-----~G~~lA~~~~~~Ga~V~li~g~~~~----~~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~ 88 (185)
T PF04127_consen 18 DPVRFITNRSSGK-----MGAALAEEAARRGAEVTLIHGPSSL----PPPPGVKVIRVESAEEMLEAVKELLPSADIIIM 88 (185)
T ss_dssp SSSEEEEES--SH-----HHHHHHHHHHHTT-EEEEEE-TTS--------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE
T ss_pred CCceEecCCCcCH-----HHHHHHHHHHHCCCEEEEEecCccc----cccccceEEEecchhhhhhhhccccCcceeEEE
Confidence 3577887555432 2234777788889999988876431 13567777776655544 566777765
Q ss_pred e
Q 013835 313 H 313 (435)
Q Consensus 313 h 313 (435)
-
T Consensus 89 a 89 (185)
T PF04127_consen 89 A 89 (185)
T ss_dssp -
T ss_pred e
Confidence 4
No 448
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=26.88 E-value=2.3e+02 Score=27.70 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=46.0
Q ss_pred HHHHHHHHHHCCCeEEEE--eCCCcHHHHHhcCceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHHHhhccCCCccC
Q 013835 13 FVAIGKRLQDYGHRVRLA--THSNFKDFVLTAGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLLPACRDPDLDS 90 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~--~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (435)
|-.||+-|.++||+|+=- ......+.+++.|++.+.=. +- . ..
T Consensus 20 MsglA~iL~~~G~~VsGSD~~~~~~t~~L~~~G~~i~~gh-------------~~----~-------ni----------- 64 (459)
T COG0773 20 MSGLAEILLNLGYKVSGSDLAESPMTQRLEALGIEIFIGH-------------DA----E-------NI----------- 64 (459)
T ss_pred HHHHHHHHHhCCCceECccccccHHHHHHHHCCCeEeCCC-------------CH----H-------Hc-----------
Confidence 789999999999998743 12225667777887755421 00 0 00
Q ss_pred CcccCcCEEEeCCcc---hhHHHHHHHcCCCEEE
Q 013835 91 GIAFKADAIIANPPA---YGHVHVAEALKIPIHI 121 (435)
Q Consensus 91 ~~~~~pDlVi~d~~~---~~~~~~A~~~~iP~v~ 121 (435)
..+|+||+.... -.-+..|+..|||++.
T Consensus 65 ---~~~~~VV~s~Ai~~~NpEi~~A~e~~ipi~~ 95 (459)
T COG0773 65 ---LDADVVVVSNAIKEDNPEIVAALERGIPVIS 95 (459)
T ss_pred ---CCCceEEEecccCCCCHHHHHHHHcCCCeEc
Confidence 145667765332 2457899999999976
No 449
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=26.83 E-value=4.8e+02 Score=24.88 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=17.8
Q ss_pred cCcCEEEeCCcchhHHHHHHHcCCCEEEee
Q 013835 94 FKADAIIANPPAYGHVHVAEALKIPIHIFF 123 (435)
Q Consensus 94 ~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~ 123 (435)
.+||+++.+.. ....|+++++|.+.+.
T Consensus 340 ~~pdl~ig~~~---~~~~a~~~~~~~~~~~ 366 (398)
T PF00148_consen 340 LKPDLLIGSSH---ERYLAKKLGIPLIRIG 366 (398)
T ss_dssp HT-SEEEESHH---HHHHHHHTT--EEE-S
T ss_pred cCCCEEEechh---hHHHHHHhCCCeEEEe
Confidence 38999999965 3568888888888753
No 450
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.81 E-value=2.7e+02 Score=27.54 Aligned_cols=28 Identities=7% Similarity=-0.013 Sum_probs=20.3
Q ss_pred CcCEEEeCCc---chhHHHHHHHcCCCEEEe
Q 013835 95 KADAIIANPP---AYGHVHVAEALKIPIHIF 122 (435)
Q Consensus 95 ~pDlVi~d~~---~~~~~~~A~~~~iP~v~~ 122 (435)
.+|+||..+. ..+-+..|+..|+|++.-
T Consensus 74 ~~d~vV~Spgi~~~~p~~~~a~~~gi~v~~~ 104 (473)
T PRK00141 74 SFSLVVTSPGWRPDSPLLVDAQSQGLEVIGD 104 (473)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHCCCceeeH
Confidence 5689987643 334577889999999863
No 451
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=26.81 E-value=1.7e+02 Score=25.40 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=25.4
Q ss_pred HHHHHHHHHCCCeEEEEeCCCc------HHHHHhcCceeEEcc
Q 013835 14 VAIGKRLQDYGHRVRLATHSNF------KDFVLTAGLEFYPLD 50 (435)
Q Consensus 14 ~~la~~L~~rGh~V~~~~~~~~------~~~~~~~g~~~~~i~ 50 (435)
.++|++|.++|++|++...... .+...+.+.+++..+
T Consensus 10 ~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D 52 (241)
T PF13561_consen 10 RAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCD 52 (241)
T ss_dssp HHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESC
T ss_pred HHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeec
Confidence 5789999999999999976543 223344566654443
No 452
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=26.75 E-value=1.5e+02 Score=24.32 Aligned_cols=38 Identities=11% Similarity=0.191 Sum_probs=25.0
Q ss_pred HHHHHHHHHH---CCCeEEEEeCCCcHHHHHh---cCceeEEcc
Q 013835 13 FVAIGKRLQD---YGHRVRLATHSNFKDFVLT---AGLEFYPLD 50 (435)
Q Consensus 13 ~~~la~~L~~---rGh~V~~~~~~~~~~~~~~---~g~~~~~i~ 50 (435)
...|++++.+ .+.+|-+++.+.....+.. .+....-+.
T Consensus 12 ~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle 55 (162)
T PF10237_consen 12 AEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLE 55 (162)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEe
Confidence 3456777765 4678999998887777666 444444443
No 453
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=26.58 E-value=95 Score=28.34 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=25.1
Q ss_pred HHHHHHHHHCCCeEEEEeCCCcHHHHHhcCceeEE
Q 013835 14 VAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYP 48 (435)
Q Consensus 14 ~~la~~L~~rGh~V~~~~~~~~~~~~~~~g~~~~~ 48 (435)
..+|..|.+.||+|+++..+...+.+.+.|+....
T Consensus 13 ~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~ 47 (305)
T PRK12921 13 GTFGGRLLEAGRDVTFLVRPKRAKALRERGLVIRS 47 (305)
T ss_pred HHHHHHHHHCCCceEEEecHHHHHHHHhCCeEEEe
Confidence 45788899999999999874444555666765443
No 454
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=26.49 E-value=89 Score=25.28 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=38.8
Q ss_pred EEeCCchHHHHHHHh--CCCEEeecCCCChhhHHHHHHHcCCCCCCCCCCCCCH----HHHHHHHHHh
Q 013835 311 VHHGGAGTTAAGLRA--ACPTTIVPFFGDQPFWGERVHARGVGPPPIPVDEFSL----PKLINAINFM 372 (435)
Q Consensus 311 I~hgG~~s~~Eal~~--G~P~l~~P~~~dQ~~na~~v~~~g~G~~~l~~~~~~~----~~l~~~i~~l 372 (435)
|+-||-+|+-++++. |.+.+ -+|-.+-...+++++.|+ -++-+ +. +.|.+++...
T Consensus 3 VsG~GKStvg~~lA~~lg~~fi----dGDdlHp~aNi~KM~~Gi-PL~Dd--DR~pWL~~l~~~~~~~ 63 (161)
T COG3265 3 VSGSGKSTVGSALAERLGAKFI----DGDDLHPPANIEKMSAGI-PLNDD--DRWPWLEALGDAAASL 63 (161)
T ss_pred CCccCHHHHHHHHHHHcCCcee----cccccCCHHHHHHHhCCC-CCCcc--hhhHHHHHHHHHHHHh
Confidence 567899999999875 44444 688888889999999997 56533 33 4455555543
No 455
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.46 E-value=66 Score=32.37 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=27.4
Q ss_pred ccchhHHH---HHHHHHHHCCCeEEEEeCCC-----cHHHHHhcCcee
Q 013835 7 RGDVQPFV---AIGKRLQDYGHRVRLATHSN-----FKDFVLTAGLEF 46 (435)
Q Consensus 7 ~GH~~p~~---~la~~L~~rGh~V~~~~~~~-----~~~~~~~~g~~~ 46 (435)
.||+.+.+ .+||.++.+|++|.|+|..+ .....++.|++.
T Consensus 22 lGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP 69 (558)
T COG0143 22 LGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITP 69 (558)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCH
Confidence 58888654 46888888999999998532 223344556553
No 456
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=26.35 E-value=4e+02 Score=22.95 Aligned_cols=32 Identities=9% Similarity=-0.029 Sum_probs=20.6
Q ss_pred cCCccchhHHHHHHHHHHHC-CCeEEEEeCCCc
Q 013835 4 VGTRGDVQPFVAIGKRLQDY-GHRVRLATHSNF 35 (435)
Q Consensus 4 ~~~~GH~~p~~~la~~L~~r-Gh~V~~~~~~~~ 35 (435)
.|+.|=..-+.+++.+-.++ |..|.+++.+.-
T Consensus 27 ~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~ 59 (226)
T PF06745_consen 27 PPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEP 59 (226)
T ss_dssp STTSSHHHHHHHHHHHHHHHHT--EEEEESSS-
T ss_pred CCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCC
Confidence 45666666677777666667 999999986543
No 457
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=26.12 E-value=2.2e+02 Score=26.59 Aligned_cols=16 Identities=13% Similarity=0.164 Sum_probs=13.3
Q ss_pred HHHHHHcCCCEEEeec
Q 013835 109 VHVAEALKIPIHIFFT 124 (435)
Q Consensus 109 ~~~A~~~~iP~v~~~~ 124 (435)
.++|+.+++|++.+..
T Consensus 252 A~~Ak~~~vPfyV~a~ 267 (331)
T TIGR00512 252 AVLAKHHGVPFYVAAP 267 (331)
T ss_pred HHHHHHhCCCEEEecc
Confidence 4789999999998754
No 458
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=26.11 E-value=3e+02 Score=23.47 Aligned_cols=46 Identities=26% Similarity=0.321 Sum_probs=29.8
Q ss_pred ccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHH--HhcCceeEEcc
Q 013835 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFV--LTAGLEFYPLD 50 (435)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~--~~~g~~~~~i~ 50 (435)
-.|+.|.+- ..++++|.++||+|+.++........ ...+++++..+
T Consensus 3 I~GatG~iG--~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~d 50 (236)
T PF01370_consen 3 ITGATGFIG--SALVRQLLKKGHEVIVLSRSSNSESFEEKKLNVEFVIGD 50 (236)
T ss_dssp EETTTSHHH--HHHHHHHHHTTTEEEEEESCSTGGHHHHHHTTEEEEESE
T ss_pred EEccCCHHH--HHHHHHHHHcCCccccccccccccccccccceEEEEEee
Confidence 345555554 35699999999999877755443322 22377777765
No 459
>PRK10586 putative oxidoreductase; Provisional
Probab=26.07 E-value=3.7e+02 Score=25.51 Aligned_cols=89 Identities=11% Similarity=0.024 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHCC-CeEEEEeCCCcH--------HHHHhcCceeEEccccccCCCCCCCCCchhhHHHHHHHHHHHHHhh
Q 013835 12 PFVAIGKRLQDYG-HRVRLATHSNFK--------DFVLTAGLEFYPLDMVKNKGFLPSGPSEIPVQRNQMKEIIYSLLPA 82 (435)
Q Consensus 12 p~~~la~~L~~rG-h~V~~~~~~~~~--------~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (435)
-...+.+.+.+.| .++.+++.+... +.++..++.+..+. +.... ....+... .
T Consensus 21 a~~~l~~~~~~~g~~~~lvv~g~~~~~~~~~~~~~~l~~~~~~~~~~~----------g~~~~----~~v~~l~~----~ 82 (362)
T PRK10586 21 SIDHLHDFFTDEQLSRAVWIYGERAIAAAQPYLPPAFELPGAKHILFR----------GHCSE----SDVAQLAA----A 82 (362)
T ss_pred HHHHHHHHHHhcCCCeEEEEEChHHHHHHHHHHHHHHHHcCCeEEEeC----------CCCCH----HHHHHHHH----H
Confidence 3566778887777 688888864322 22445677665553 00111 12222111 1
Q ss_pred ccCCCccCCcccCcCEEEe---CCcchhHHHHHHHcCCCEEEeeccCC
Q 013835 83 CRDPDLDSGIAFKADAIIA---NPPAYGHVHVAEALKIPIHIFFTMPW 127 (435)
Q Consensus 83 ~~~~~~~~~~~~~pDlVi~---d~~~~~~~~~A~~~~iP~v~~~~~~~ 127 (435)
. + .++|+||. ....=.+..+|...++|++.+-+.+.
T Consensus 83 ~--------~-~~~d~iiavGGGs~iD~aK~~a~~~~~p~i~vPT~a~ 121 (362)
T PRK10586 83 S--------G-DDRQVVIGVGGGALLDTAKALARRLGLPFVAIPTIAA 121 (362)
T ss_pred h--------c-cCCCEEEEecCcHHHHHHHHHHhhcCCCEEEEeCCcc
Confidence 0 1 26799985 23333346677888999999876544
No 460
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=26.05 E-value=98 Score=27.76 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=21.7
Q ss_pred CcCEEEeC----------Cc---chhHHHHHHHcCCCEEEeec
Q 013835 95 KADAIIAN----------PP---AYGHVHVAEALKIPIHIFFT 124 (435)
Q Consensus 95 ~pDlVi~d----------~~---~~~~~~~A~~~~iP~v~~~~ 124 (435)
+||+||+. .. +.++.+-|..+|||.|.++.
T Consensus 87 ~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 87 PPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred CCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 89999974 12 22345667889999999874
No 461
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=25.94 E-value=3.3e+02 Score=24.81 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=21.1
Q ss_pred CcCEEEeCCcchhHHHHHHHcCCCEEEee
Q 013835 95 KADAIIANPPAYGHVHVAEALKIPIHIFF 123 (435)
Q Consensus 95 ~pDlVi~d~~~~~~~~~A~~~~iP~v~~~ 123 (435)
..|+||+- ..+.+..-|-.+|+|.+++-
T Consensus 250 ~ad~vIs~-~G~~t~~Ea~~~g~P~l~ip 277 (318)
T PF13528_consen 250 AADLVISK-GGYTTISEALALGKPALVIP 277 (318)
T ss_pred hCCEEEEC-CCHHHHHHHHHcCCCEEEEe
Confidence 45999987 34444668889999999863
No 462
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=25.82 E-value=61 Score=26.34 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=22.9
Q ss_pred HHHHHHHHHCCCeEEEEeCCC-cHHHHHhcCc
Q 013835 14 VAIGKRLQDYGHRVRLATHSN-FKDFVLTAGL 44 (435)
Q Consensus 14 ~~la~~L~~rGh~V~~~~~~~-~~~~~~~~g~ 44 (435)
.++|..|.++||+|++++.+. ..+.++..+.
T Consensus 12 ~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~ 43 (157)
T PF01210_consen 12 TALAALLADNGHEVTLWGRDEEQIEEINETRQ 43 (157)
T ss_dssp HHHHHHHHHCTEEEEEETSCHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCEEEEEeccHHHHHHHHHhCC
Confidence 478999999999999998764 3344444443
No 463
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=25.74 E-value=3.4e+02 Score=23.22 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=18.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCCC
Q 013835 13 FVAIGKRLQDYGHRVRLATHSN 34 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~ 34 (435)
+..+.+.|+++|+.+.++|...
T Consensus 97 ~~~~l~~l~~~g~~~~i~S~~~ 118 (222)
T PRK10826 97 VREALALCKAQGLKIGLASASP 118 (222)
T ss_pred HHHHHHHHHHCCCeEEEEeCCc
Confidence 6778889999999999998754
No 464
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=25.61 E-value=2.8e+02 Score=26.31 Aligned_cols=39 Identities=13% Similarity=0.149 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCC---cH------HHHHhcCceeEEcc
Q 013835 12 PFVAIGKRLQDYGHRVRLATHSN---FK------DFVLTAGLEFYPLD 50 (435)
Q Consensus 12 p~~~la~~L~~rGh~V~~~~~~~---~~------~~~~~~g~~~~~i~ 50 (435)
..+.+.+.++++|.++.+++.+. .. ..+.+.|+++.-+.
T Consensus 187 tal~~i~~a~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GIpvtlI~ 234 (363)
T PRK05772 187 TALAPVKLAKALGMSVSVIAPETRPWLQGSRLTVYELMEEGIKVTLIT 234 (363)
T ss_pred cHHHHHHHHHHCCCeEEEEECCCCccchhHHHHHHHHHHCCCCEEEEe
Confidence 34566677778898888886432 11 23345677766664
No 465
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=25.51 E-value=2.6e+02 Score=25.46 Aligned_cols=23 Identities=9% Similarity=0.257 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCC
Q 013835 11 QPFVAIGKRLQDYGHRVRLATHS 33 (435)
Q Consensus 11 ~p~~~la~~L~~rGh~V~~~~~~ 33 (435)
.+-+.+++.|.+.|++|.++..+
T Consensus 11 ~r~~~~~~~l~~~g~~v~~~g~~ 33 (287)
T TIGR02853 11 ARQLELIRKLEELDAKISLIGFD 33 (287)
T ss_pred HHHHHHHHHHHHCCCEEEEEecc
Confidence 46788999999999999999754
No 466
>PRK13057 putative lipid kinase; Reviewed
Probab=25.46 E-value=81 Score=28.67 Aligned_cols=66 Identities=23% Similarity=0.172 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCCchHHHHHH----HhCCCEEeec
Q 013835 258 MTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGL----RAACPTTIVP 333 (435)
Q Consensus 258 ~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~l~I~hgG~~s~~Eal----~~G~P~l~~P 333 (435)
.++.+.+.+++.+..+.+.......+ ..+. + + ++....|.+|..||=||+.|++ ..+.|+-++|
T Consensus 14 ~~~~i~~~l~~~g~~~~~~~t~~~~~-a~~~---------~-~-~~~~~~d~iiv~GGDGTv~~v~~~l~~~~~~lgiiP 81 (287)
T PRK13057 14 ALAAARAALEAAGLELVEPPAEDPDD-LSEV---------I-E-AYADGVDLVIVGGGDGTLNAAAPALVETGLPLGILP 81 (287)
T ss_pred hHHHHHHHHHHcCCeEEEEecCCHHH-HHHH---------H-H-HHHcCCCEEEEECchHHHHHHHHHHhcCCCcEEEEC
Confidence 45667788877777655443221110 0000 0 0 1235578999999999988885 3478999999
Q ss_pred CC
Q 013835 334 FF 335 (435)
Q Consensus 334 ~~ 335 (435)
..
T Consensus 82 ~G 83 (287)
T PRK13057 82 LG 83 (287)
T ss_pred CC
Confidence 65
No 467
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=25.45 E-value=3.9e+02 Score=22.50 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=22.8
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCc---HHHHHhcCc
Q 013835 13 FVAIGKRLQDYGHRVRLATHSNF---KDFVLTAGL 44 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~~---~~~~~~~g~ 44 (435)
+..+.+.|+++|+.+.++|.... ...+...|+
T Consensus 80 ~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l 114 (205)
T TIGR01454 80 VPELLAELRADGVGTAIATGKSGPRARSLLEALGL 114 (205)
T ss_pred HHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCC
Confidence 66788889999999999986542 233445555
No 468
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.44 E-value=3.1e+02 Score=26.89 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=18.9
Q ss_pred CcCEEEeCCcch-------hHHHHHHHcCCCEEE
Q 013835 95 KADAIIANPPAY-------GHVHVAEALKIPIHI 121 (435)
Q Consensus 95 ~pDlVi~d~~~~-------~~~~~A~~~~iP~v~ 121 (435)
.+|+||..+... ..+..|+..|+|++.
T Consensus 65 ~~d~vv~sp~i~~~~~~~~~~v~~a~~~gi~i~~ 98 (460)
T PRK01390 65 GFAALVLSPGVPLTHPKPHWVVDLARAAGVEVIG 98 (460)
T ss_pred CCCEEEECCCCCccCCcccHHHHHHHHcCCcEEe
Confidence 679999764322 135677888899886
No 469
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=25.34 E-value=3.7e+02 Score=25.52 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=22.5
Q ss_pred HHHHHHHHHHC-C-CeEEEEeCCCc---------HHHHHhcCceeEE
Q 013835 13 FVAIGKRLQDY-G-HRVRLATHSNF---------KDFVLTAGLEFYP 48 (435)
Q Consensus 13 ~~~la~~L~~r-G-h~V~~~~~~~~---------~~~~~~~g~~~~~ 48 (435)
.+++++.|.++ | -++.++.+++. ++.+...|-+.+.
T Consensus 121 ~~pl~~~~~~~~G~~r~~lvGSdYv~pre~Nri~r~~l~~~Ggevvg 167 (363)
T PF13433_consen 121 LLPLIDYLLENFGAKRFYLVGSDYVYPRESNRIIRDLLEARGGEVVG 167 (363)
T ss_dssp HHHHHHHHHHHS--SEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHhccCCceEEEecCCccchHHHHHHHHHHHHHcCCEEEE
Confidence 56777777665 9 99999987754 3344556655443
No 470
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=25.30 E-value=1.2e+02 Score=29.00 Aligned_cols=19 Identities=5% Similarity=0.172 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhCCeEEEE
Q 013835 258 MTQIIVEAFEQTGQRGIIN 276 (435)
Q Consensus 258 ~~~~~~~~~~~~~~~~iv~ 276 (435)
.++.+.+.+++.+..+.+.
T Consensus 45 ~~~~v~~~L~~~~i~~~~~ 63 (379)
T TIGR02638 45 VADKVTDLLDEAGIAYELF 63 (379)
T ss_pred chHHHHHHHHHCCCeEEEE
Confidence 4556777777777766654
No 471
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=25.29 E-value=1.9e+02 Score=29.41 Aligned_cols=29 Identities=10% Similarity=0.068 Sum_probs=22.8
Q ss_pred ccccEEEEeCCc------hHHHHHHHhCCCEEeec
Q 013835 305 LQCKAVVHHGGA------GTTAAGLRAACPTTIVP 333 (435)
Q Consensus 305 ~~~~l~I~hgG~------~s~~Eal~~G~P~l~~P 333 (435)
.+..++++|.|- +.+.||...++|+|++.
T Consensus 75 g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 75 GKPAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 445677777664 67999999999999985
No 472
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=25.21 E-value=78 Score=23.09 Aligned_cols=36 Identities=28% Similarity=0.475 Sum_probs=24.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCcHHHHHhcCceeEEcc
Q 013835 13 FVAIGKRLQDYGHRVRLATHSNFKDFVLTAGLEFYPLD 50 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~~~~~~~~~g~~~~~i~ 50 (435)
++++|+.|.+.||++ ++| +.-.+.+++.|+++..+-
T Consensus 2 ~~~~a~~l~~lG~~i-~AT-~gTa~~L~~~Gi~~~~v~ 37 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI-YAT-EGTAKFLKEHGIEVTEVV 37 (95)
T ss_dssp HHHHHHHHHHTTSEE-EEE-HHHHHHHHHTT--EEECC
T ss_pred HHHHHHHHHHCCCEE-EEC-hHHHHHHHHcCCCceeee
Confidence 578999999999765 334 334577889999966653
No 473
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.94 E-value=5.1e+02 Score=25.28 Aligned_cols=28 Identities=11% Similarity=0.049 Sum_probs=19.9
Q ss_pred CcCEEEeCCc---chhHHHHHHHcCCCEEEe
Q 013835 95 KADAIIANPP---AYGHVHVAEALKIPIHIF 122 (435)
Q Consensus 95 ~pDlVi~d~~---~~~~~~~A~~~~iP~v~~ 122 (435)
++|+||..+- ..+-+..|+..|+|++.-
T Consensus 68 ~~d~vv~s~gi~~~~~~~~~a~~~~i~v~~~ 98 (459)
T PRK02705 68 QPDLVVVSPGIPWDHPTLVELRERGIEVIGE 98 (459)
T ss_pred cCCEEEECCCCCCCCHHHHHHHHcCCcEEEh
Confidence 6799987533 334567788899998763
No 474
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=24.89 E-value=5.8e+02 Score=23.91 Aligned_cols=33 Identities=27% Similarity=0.252 Sum_probs=23.3
Q ss_pred cCcCEEEe---CCcchhHHHHHHHcCCCEEEeeccC
Q 013835 94 FKADAIIA---NPPAYGHVHVAEALKIPIHIFFTMP 126 (435)
Q Consensus 94 ~~pDlVi~---d~~~~~~~~~A~~~~iP~v~~~~~~ 126 (435)
.++|+||. .+..=.+..+|...++|+|.+-+++
T Consensus 76 ~~~D~IIavGGGS~iD~aK~ia~~~~~P~iaIPTTa 111 (351)
T cd08170 76 NGADVVIGIGGGKTLDTAKAVADYLGAPVVIVPTIA 111 (351)
T ss_pred cCCCEEEEecCchhhHHHHHHHHHcCCCEEEeCCcc
Confidence 48999996 2333344677777899999986654
No 475
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=24.77 E-value=5.1e+02 Score=23.18 Aligned_cols=94 Identities=14% Similarity=-0.008 Sum_probs=51.1
Q ss_pred cEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCC------------CChhh---h--c
Q 013835 242 PIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDN------------IPHDW---L--F 304 (435)
Q Consensus 242 ~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~------------~p~~~---~--l 304 (435)
+++++.+.............+.+.+.+.+..+.+.+.............++.+... ..... + -
T Consensus 2 I~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (348)
T cd03820 2 ILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPFYELDPKIKVIDLGDKRDSKLLARFKKLRRLRKLLKN 81 (348)
T ss_pred eEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCCccceeecccccccchhccccchHHHHHhhcc
Confidence 34444433323334445666888888788887777644332111112222222211 11111 1 3
Q ss_pred ccccEEEEeCCc-hHHHHHHHhCC-CEEeecCC
Q 013835 305 LQCKAVVHHGGA-GTTAAGLRAAC-PTTIVPFF 335 (435)
Q Consensus 305 ~~~~l~I~hgG~-~s~~Eal~~G~-P~l~~P~~ 335 (435)
.+.|+++.|.+. ..+...+..+. |++...+.
T Consensus 82 ~~~d~i~~~~~~~~~~~~~~~~~~~~~i~~~~~ 114 (348)
T cd03820 82 NKPDVVISFLTSLLTFLASLGLKIVKLIVSEHN 114 (348)
T ss_pred cCCCEEEEcCchHHHHHHHHhhccccEEEecCC
Confidence 689999999987 56666777776 88877543
No 476
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=24.77 E-value=2.1e+02 Score=30.72 Aligned_cols=90 Identities=9% Similarity=0.076 Sum_probs=57.9
Q ss_pred EcCCCChhhh---cccccEEEE---eCCchHHH-HHHHhCC------------------CEEeecCCCChhhHHHHHHHc
Q 013835 294 LLDNIPHDWL---FLQCKAVVH---HGGAGTTA-AGLRAAC------------------PTTIVPFFGDQPFWGERVHAR 348 (435)
Q Consensus 294 ~~~~~p~~~~---l~~~~l~I~---hgG~~s~~-Eal~~G~------------------P~l~~P~~~dQ~~na~~v~~~ 348 (435)
+...+|+.++ +..||+++- +-|+|.+. |-+++.. .+|++..+. .....+
T Consensus 420 ~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfa------Gaa~~L 493 (854)
T PLN02205 420 IDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFI------GCSPSL 493 (854)
T ss_pred EecCCCHHHHHHHHHhccEEEeccccccccccchheeEEccCccccccccccccccCCCCceEeeecc------chhHHh
Confidence 3346787776 899998884 45888654 7776643 344444321 122233
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHhhccC
Q 013835 349 GVGPPPIPVDEFSLPKLINAINFML---DPKVKERAVELAEAMEKED 392 (435)
Q Consensus 349 g~G~~~l~~~~~~~~~l~~~i~~ll---~~~~~~~~~~~~~~~~~~~ 392 (435)
+-++ .+++ .+.++++++|.+.| .++-+.|..++.+.+...+
T Consensus 494 ~~Ai-~VNP--~d~~~~a~ai~~AL~m~~~Er~~R~~~~~~~v~~~d 537 (854)
T PLN02205 494 SGAI-RVNP--WNIDAVADAMDSALEMAEPEKQLRHEKHYRYVSTHD 537 (854)
T ss_pred CcCe-EECC--CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCC
Confidence 3355 5654 47799999999988 3667777777777776654
No 477
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=24.62 E-value=3.2e+02 Score=26.49 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=20.0
Q ss_pred CcCEEEeCCcc---hhHHHHHHHcCCCEEEe
Q 013835 95 KADAIIANPPA---YGHVHVAEALKIPIHIF 122 (435)
Q Consensus 95 ~pDlVi~d~~~---~~~~~~A~~~~iP~v~~ 122 (435)
.+|+||..+.. .+-+..|+..|+|++.-
T Consensus 62 ~~d~vv~sp~i~~~~p~~~~a~~~~i~i~~~ 92 (433)
T TIGR01087 62 NADLVVKSPGIPPDHPLVQAAAKRGIPVVGD 92 (433)
T ss_pred cCCEEEECCCCCCCCHHHHHHHHCCCcEEEH
Confidence 57889887433 34467888999998763
No 478
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=24.56 E-value=92 Score=27.17 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=20.3
Q ss_pred cccCcCEEEeCCcc--hhHHHHH----HHcCCCEEEeec
Q 013835 92 IAFKADAIIANPPA--YGHVHVA----EALKIPIHIFFT 124 (435)
Q Consensus 92 ~~~~pDlVi~d~~~--~~~~~~A----~~~~iP~v~~~~ 124 (435)
++|+||++|+-+.. ..+.-.| ...|+|+|+++-
T Consensus 57 ~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D 95 (277)
T PRK00994 57 EEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGD 95 (277)
T ss_pred HhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcC
Confidence 34699999874222 2223333 446899999864
No 479
>PRK13059 putative lipid kinase; Reviewed
Probab=24.55 E-value=81 Score=28.84 Aligned_cols=67 Identities=15% Similarity=0.127 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEEEEeCCchHHHHHH---H---hCCCEE
Q 013835 257 KMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAVVHHGGAGTTAAGL---R---AACPTT 330 (435)
Q Consensus 257 ~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~l~I~hgG~~s~~Eal---~---~G~P~l 330 (435)
+.++.+.+.+++.+..+.+.......+ . +.. .+..-...|.+|..||=||+.|++ . .++|+-
T Consensus 19 ~~~~~i~~~l~~~g~~~~~~~~~~~~~-~----~~~-------~~~~~~~~d~vi~~GGDGTv~evv~gl~~~~~~~~lg 86 (295)
T PRK13059 19 SELDKVIRIHQEKGYLVVPYRISLEYD-L----KNA-------FKDIDESYKYILIAGGDGTVDNVVNAMKKLNIDLPIG 86 (295)
T ss_pred HHHHHHHHHHHHCCcEEEEEEccCcch-H----HHH-------HHHhhcCCCEEEEECCccHHHHHHHHHHhcCCCCcEE
Confidence 445667778887777755432111100 0 000 111235578999999999988874 2 358999
Q ss_pred eecCC
Q 013835 331 IVPFF 335 (435)
Q Consensus 331 ~~P~~ 335 (435)
++|..
T Consensus 87 viP~G 91 (295)
T PRK13059 87 ILPVG 91 (295)
T ss_pred EECCC
Confidence 99965
No 480
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=24.34 E-value=1.8e+02 Score=27.85 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=48.0
Q ss_pred HHHHHHc-CCCcEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCCCCCCCCCCCCceEEcCCCChhhhcccccEE
Q 013835 232 LVKWLEA-GSKPIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWGGLGNLAEPKDSIYLLDNIPHDWLFLQCKAV 310 (435)
Q Consensus 232 l~~~~~~-~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~l~ 310 (435)
+.+++.. ++++++|+ |..... ...++.+.+.++..+..+.+..+-.. +.+..- +..-+ ....-.++|++
T Consensus 14 l~~~~~~~g~~~livt-~~~~~~--~~~~~~v~~~L~~~~~~~~~f~~v~~-----~~~~~~-v~~~~-~~~~~~~~D~I 83 (386)
T cd08191 14 LPRLAARLGSRALIVT-DERMAG--TPVFAELVQALAAAGVEVEVFDGVLP-----DLPRSE-LCDAA-SAAARAGPDVI 83 (386)
T ss_pred HHHHHHHcCCeEEEEE-Ccchhh--cchHHHHHHHHHHcCCeEEEECCCCC-----CcCHHH-HHHHH-HHHHhcCCCEE
Confidence 4444433 34455566 433221 23566677888877777766532211 111100 01100 00012688999
Q ss_pred EEeCCchHHHHH--HH--h------------------CCCEEeecCC
Q 013835 311 VHHGGAGTTAAG--LR--A------------------ACPTTIVPFF 335 (435)
Q Consensus 311 I~hgG~~s~~Ea--l~--~------------------G~P~l~~P~~ 335 (435)
|.=||...+--| ++ + ++|++++|..
T Consensus 84 IaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 84 IGLGGGSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred EEeCCchHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 998887433222 22 1 7899999965
No 481
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=24.32 E-value=61 Score=27.88 Aligned_cols=32 Identities=16% Similarity=-0.015 Sum_probs=28.8
Q ss_pred ccCCccchhHHHHHHHHHHHCCCeEEEEeCCC
Q 013835 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATHSN 34 (435)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~ 34 (435)
.+|+.|-....-.||++|..++|+|..++.+.
T Consensus 8 GyPgsGKTtfakeLak~L~~~i~~vi~l~kdy 39 (261)
T COG4088 8 GYPGSGKTTFAKELAKELRQEIWRVIHLEKDY 39 (261)
T ss_pred cCCCCCchHHHHHHHHHHHHhhhhccccchhh
Confidence 47899999999999999999999998887654
No 482
>PLN02470 acetolactate synthase
Probab=24.31 E-value=2.2e+02 Score=29.07 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=23.8
Q ss_pred ccccEEEEeCCc------hHHHHHHHhCCCEEeec
Q 013835 305 LQCKAVVHHGGA------GTTAAGLRAACPTTIVP 333 (435)
Q Consensus 305 ~~~~l~I~hgG~------~s~~Eal~~G~P~l~~P 333 (435)
.+..++++|.|- +.+.+|.+.++|+|++.
T Consensus 75 g~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 75 GKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 456678888774 67999999999999995
No 483
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.01 E-value=4e+02 Score=26.48 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=20.3
Q ss_pred CcCEEEeCC---cchhHHHHHHHcCCCEEEe
Q 013835 95 KADAIIANP---PAYGHVHVAEALKIPIHIF 122 (435)
Q Consensus 95 ~pDlVi~d~---~~~~~~~~A~~~~iP~v~~ 122 (435)
.+|+||..+ ...+.+..|+..|||++.-
T Consensus 70 ~~D~VV~SpGi~~~~p~~~~a~~~gi~v~~~ 100 (488)
T PRK03369 70 DYALVVTSPGFRPTAPVLAAAAAAGVPIWGD 100 (488)
T ss_pred cCCEEEECCCCCCCCHHHHHHHHCCCcEeeH
Confidence 469998764 3334577889999999863
No 484
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=23.89 E-value=1e+02 Score=27.97 Aligned_cols=57 Identities=18% Similarity=0.087 Sum_probs=31.1
Q ss_pred CCcccCcCEEEeCCcch--hHHHHHHH-----cCCCEEEeecc-CCCCCCCCCCCCcccCCCccc
Q 013835 90 SGIAFKADAIIANPPAY--GHVHVAEA-----LKIPIHIFFTM-PWTPTSEFPHPLSRVKQPAGY 146 (435)
Q Consensus 90 ~~~~~~pDlVi~d~~~~--~~~~~A~~-----~~iP~v~~~~~-~~~~~~~~p~~~~~~~~~~~~ 146 (435)
.+..++||+|+.|-..+ -+..+|++ -.+|.|.+++. -++..+.--++..|+..|.+.
T Consensus 39 ~Le~~kpDLifldI~mp~~ngiefaeQvr~i~~~v~iifIssh~eya~dsf~~n~~dYl~KPvt~ 103 (361)
T COG3947 39 LLEVFKPDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFISSHAEYADDSFGMNLDDYLPKPVTP 103 (361)
T ss_pred HHHhcCCCEEEEEeecCCccHHHHHHHHHHhhccCcEEEEecchhhhhhhcccchHhhccCCCCH
Confidence 35567999999984333 24555544 33777776532 122223333445565555544
No 485
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=23.83 E-value=5.5e+02 Score=24.06 Aligned_cols=33 Identities=27% Similarity=0.252 Sum_probs=22.7
Q ss_pred cCcCEEEe---CCcchhHHHHHHHcCCCEEEeeccC
Q 013835 94 FKADAIIA---NPPAYGHVHVAEALKIPIHIFFTMP 126 (435)
Q Consensus 94 ~~pDlVi~---d~~~~~~~~~A~~~~iP~v~~~~~~ 126 (435)
.++|+||. ....=.+..+|...++|+|.+-+++
T Consensus 75 ~~~D~iIavGGGs~~D~aK~ia~~~~~p~i~VPTT~ 110 (347)
T cd08172 75 NGADVIIGIGGGKVLDTAKAVADRLGVPVITVPTLA 110 (347)
T ss_pred cCCCEEEEeCCcHHHHHHHHHHHHhCCCEEEecCcc
Confidence 38899985 2333234667777899999986654
No 486
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.80 E-value=2.6e+02 Score=22.80 Aligned_cols=30 Identities=10% Similarity=0.115 Sum_probs=20.7
Q ss_pred cCcCEEEeCCc-------ch---hHHHHHHHcCCCEEEee
Q 013835 94 FKADAIIANPP-------AY---GHVHVAEALKIPIHIFF 123 (435)
Q Consensus 94 ~~pDlVi~d~~-------~~---~~~~~A~~~~iP~v~~~ 123 (435)
..||+|++..- .. -+..+|+++|+|.+-.+
T Consensus 123 E~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETS 162 (219)
T KOG0081|consen 123 ENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETS 162 (219)
T ss_pred CCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeec
Confidence 38999997421 11 24578999999997643
No 487
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=23.79 E-value=1.1e+02 Score=25.27 Aligned_cols=30 Identities=20% Similarity=0.132 Sum_probs=19.6
Q ss_pred hhhHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 013835 338 QPFWGERVHARGVGPPPIPVDEFSLPKLINAINFML 373 (435)
Q Consensus 338 Q~~na~~v~~~g~G~~~l~~~~~~~~~l~~~i~~ll 373 (435)
..+.+.+=++.|+|+ .+ |++++.++|.+.+
T Consensus 101 ~~d~~~Fe~~cGVGV-~V-----T~E~I~~~V~~~i 130 (164)
T PF04558_consen 101 PIDVAEFEKACGVGV-VV-----TPEQIEAAVEKYI 130 (164)
T ss_dssp G--HHHHHHTTTTT----------HHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCe-EE-----CHHHHHHHHHHHH
Confidence 344556666679998 55 8999999999987
No 488
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=23.78 E-value=36 Score=30.15 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=15.5
Q ss_pred HHHHHHHHHHCCCeEEEEe
Q 013835 13 FVAIGKRLQDYGHRVRLAT 31 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~ 31 (435)
...+|.+|.+.||.|.+.-
T Consensus 10 Asgva~~L~~aGf~Vv~~e 28 (256)
T TIGR03309 10 ATGVAHRLHRSGFKVLMTE 28 (256)
T ss_pred HHHHHHHHHhCCCEEEEcc
Confidence 3568999999999987773
No 489
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=23.62 E-value=3.7e+02 Score=22.87 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=23.4
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCc---HHHHHhcCce
Q 013835 13 FVAIGKRLQDYGHRVRLATHSNF---KDFVLTAGLE 45 (435)
Q Consensus 13 ~~~la~~L~~rGh~V~~~~~~~~---~~~~~~~g~~ 45 (435)
+..+.+.|+++|+.+.++|.... ...++..|+.
T Consensus 92 ~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~ 127 (220)
T TIGR03351 92 AEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWT 127 (220)
T ss_pred HHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhh
Confidence 56788899999999999986542 3344555554
No 490
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.56 E-value=4.4e+02 Score=25.68 Aligned_cols=27 Identities=7% Similarity=-0.074 Sum_probs=20.1
Q ss_pred CcCEEEeCCcch---hHHHHHHHcCCCEEE
Q 013835 95 KADAIIANPPAY---GHVHVAEALKIPIHI 121 (435)
Q Consensus 95 ~pDlVi~d~~~~---~~~~~A~~~~iP~v~ 121 (435)
.+|+||..+... +-+..|+..|+|++.
T Consensus 67 ~~d~vv~spgi~~~~p~~~~a~~~~i~v~~ 96 (445)
T PRK04308 67 GFDILALSPGISERQPDIEAFKQNGGRVLG 96 (445)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHcCCcEEE
Confidence 679999875433 446778889999985
No 491
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=23.49 E-value=1.2e+02 Score=25.35 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=26.5
Q ss_pred CccchhH-HHHHHHHHHHCCCeEEEEeCCCcHH
Q 013835 6 TRGDVQP-FVAIGKRLQDYGHRVRLATHSNFKD 37 (435)
Q Consensus 6 ~~GH~~p-~~~la~~L~~rGh~V~~~~~~~~~~ 37 (435)
-.+|++| ..+-.++.+++|.+|+++++++...
T Consensus 100 lkahlypDav~~ik~wk~~g~~vyiYSSGSV~A 132 (229)
T COG4229 100 LKAHLYPDAVQAIKRWKALGMRVYIYSSGSVKA 132 (229)
T ss_pred cccccCHhHHHHHHHHHHcCCcEEEEcCCCchh
Confidence 4679998 6777899999999999999887543
No 492
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=23.48 E-value=3e+02 Score=22.67 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=26.8
Q ss_pred hHHHHHHHcCCC-cEEEeeCCCCCCChHHHHHHHHHHHHHhCCeEEEEcCCC
Q 013835 230 ESLVKWLEAGSK-PIYIGFGSLPVQEPEKMTQIIVEAFEQTGQRGIINKGWG 280 (435)
Q Consensus 230 ~~l~~~~~~~~~-~v~v~~Gs~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~ 280 (435)
+++.+.+...+| +|+|++|+-- .+.+.. +..+..+..+++.+|+.
T Consensus 89 ~~i~~~I~~~~pdiv~vglG~Pk---QE~~~~---~~~~~l~~~v~~~vG~~ 134 (171)
T cd06533 89 EEIIERINASGADILFVGLGAPK---QELWIA---RHKDRLPVPVAIGVGGS 134 (171)
T ss_pred HHHHHHHHHcCCCEEEEECCCCH---HHHHHH---HHHHHCCCCEEEEecee
Confidence 335666766554 9999999742 343432 33333466777777653
No 493
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=23.44 E-value=1.4e+02 Score=22.85 Aligned_cols=42 Identities=10% Similarity=0.172 Sum_probs=30.7
Q ss_pred ccCCccchhHHHHHHHHHHHCCCeEEEEeCCCcHHHHHhcCc
Q 013835 3 IVGTRGDVQPFVAIGKRLQDYGHRVRLATHSNFKDFVLTAGL 44 (435)
Q Consensus 3 ~~~~~GH~~p~~~la~~L~~rGh~V~~~~~~~~~~~~~~~g~ 44 (435)
.+.-.|...-+...++.++++|..|..+|........+...+
T Consensus 53 ~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~ 94 (128)
T cd05014 53 AISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDV 94 (128)
T ss_pred EEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCE
Confidence 345567777789999999999999999987655455444443
No 494
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.40 E-value=4.2e+02 Score=25.86 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=19.1
Q ss_pred CcCEEEeCCcc---hhHHHHHHHcCCCEEE
Q 013835 95 KADAIIANPPA---YGHVHVAEALKIPIHI 121 (435)
Q Consensus 95 ~pDlVi~d~~~---~~~~~~A~~~~iP~v~ 121 (435)
++|+||..+.. .+-+..|+..|+|++.
T Consensus 68 ~~d~vV~sp~i~~~~p~~~~a~~~~i~i~~ 97 (448)
T PRK03803 68 QASEIIISPGLALDTPALRAAAAMGIEVIG 97 (448)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCcEEE
Confidence 56888887433 2346678888999876
No 495
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=23.35 E-value=1.1e+02 Score=22.73 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHH--CCCeEEEEeCCCcHHHHHhcCce
Q 013835 10 VQPFVAIGKRLQD--YGHRVRLATHSNFKDFVLTAGLE 45 (435)
Q Consensus 10 ~~p~~~la~~L~~--rGh~V~~~~~~~~~~~~~~~g~~ 45 (435)
+.+...+++.|++ .+-+|.++..+...+.+++.|++
T Consensus 64 ~ts~~~~~~~l~~~~~~~~v~vlG~~~l~~~l~~~G~e 101 (101)
T PF13344_consen 64 ITSGMAAAEYLKEHKGGKKVYVLGSDGLREELREAGFE 101 (101)
T ss_dssp EEHHHHHHHHHHHHTTSSEEEEES-HHHHHHHHHTTEE
T ss_pred EChHHHHHHHHHhcCCCCEEEEEcCHHHHHHHHHcCCC
Confidence 3455566666765 46778888777777777777764
No 496
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.31 E-value=83 Score=30.16 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=21.2
Q ss_pred ccchhHHHHHHHHHHHCCCeEEEEeCC
Q 013835 7 RGDVQPFVAIGKRLQDYGHRVRLATHS 33 (435)
Q Consensus 7 ~GH~~p~~~la~~L~~rGh~V~~~~~~ 33 (435)
.||+.|+..|. .|.+.||+|+++..+
T Consensus 48 lGhlv~l~kL~-~fQ~aGh~~ivLigd 73 (401)
T COG0162 48 LGHLVPLMKLR-RFQDAGHKPIVLIGD 73 (401)
T ss_pred hhhHHHHHHHH-HHHHCCCeEEEEecc
Confidence 48999988775 477899999999754
No 497
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=23.30 E-value=46 Score=32.32 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=23.8
Q ss_pred CcccCcCEEEeCCcchhHHHHHHHcCCCEEEee
Q 013835 91 GIAFKADAIIANPPAYGHVHVAEALKIPIHIFF 123 (435)
Q Consensus 91 ~~~~~pDlVi~d~~~~~~~~~A~~~~iP~v~~~ 123 (435)
+++.+||++|.++.. ..+|+++|||++-+.
T Consensus 365 i~~~~pDliig~~~~---~~~a~k~giP~~~~~ 394 (421)
T cd01976 365 VKRLKPDLIGSGIKE---KYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHhCCCEEEecCcc---hhhhhhcCCCeEeCC
Confidence 445599999998763 568999999997654
No 498
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=23.22 E-value=91 Score=28.36 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=27.8
Q ss_pred hhhcccccEEEEeCCchHHHHHHHh----CCCEEeecC
Q 013835 301 DWLFLQCKAVVHHGGAGTTAAGLRA----ACPTTIVPF 334 (435)
Q Consensus 301 ~~~l~~~~l~I~hgG~~s~~Eal~~----G~P~l~~P~ 334 (435)
......+|++|+-||=||++.+... ++|++.++.
T Consensus 71 ~~~~~~~D~ii~lGGDGT~L~~~~~~~~~~~Pilgin~ 108 (285)
T PF01513_consen 71 EMLEEGVDLIIVLGGDGTFLRAARLFGDYDIPILGINT 108 (285)
T ss_dssp HHHCCCSSEEEEEESHHHHHHHHHHCTTST-EEEEEES
T ss_pred hhcccCCCEEEEECCCHHHHHHHHHhccCCCcEEeecC
Confidence 3347999999999999999999764 679998884
No 499
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=23.14 E-value=86 Score=28.04 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=24.3
Q ss_pred CCccchhHHHHHHHHHHHCCCeEEEEe
Q 013835 5 GTRGDVQPFVAIGKRLQDYGHRVRLAT 31 (435)
Q Consensus 5 ~~~GH~~p~~~la~~L~~rGh~V~~~~ 31 (435)
|+-|-..-+..||.+|+++|++|.++=
T Consensus 9 GGvGKTT~a~nLA~~la~~G~rvlliD 35 (267)
T cd02032 9 GGIGKSTTSSNLSVALAKRGKKVLQIG 35 (267)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 577888999999999999999999884
No 500
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=23.10 E-value=2.1e+02 Score=25.67 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=21.4
Q ss_pred cCCccchhHHHHHHHHHHHCCCeEEEEe
Q 013835 4 VGTRGDVQPFVAIGKRLQDYGHRVRLAT 31 (435)
Q Consensus 4 ~~~~GH~~p~~~la~~L~~rGh~V~~~~ 31 (435)
.|+.|--.-.-+|++.|.++|++|-+++
T Consensus 37 ~PGaGKSTli~~l~~~~~~~g~~VaVlA 64 (266)
T PF03308_consen 37 PPGAGKSTLIDALIRELRERGKRVAVLA 64 (266)
T ss_dssp -TTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CCCCcHHHHHHHHHHHHhhcCCceEEEE
Confidence 4677777778899999999999998885
Done!