BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013836
(435 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 191 bits (486), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 133/479 (27%), Positives = 226/479 (47%), Gaps = 71/479 (14%)
Query: 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN--------SPNSCN-YPHFEFC 66
V++ P P QGHINP+ +L +L+ GF IT ++T N P + + + F F
Sbjct: 10 HVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFE 69
Query: 67 SFSDDGFSETYQPSKVADDIPALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITD 126
S D G + V+ D+P L S+ + P+ + L N + CL++D
Sbjct: 70 SIPD-GLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRL---NHSTNVPPVTCLVSD 125
Query: 127 AAWFIALSVANDFKLPTIVLLTDSIAASLSYAAFPILREKGYLPIQDFQ------LEAPV 180
+ A +F+LP ++ + S + L+ F E+G +P +D LE V
Sbjct: 126 CCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKV 185
Query: 181 IEFPPL---RVKDI-PLLKTQDSNNA--DKVLSLRDSQIMASSGIIWNSFEDLEQVELTA 234
P L R+KDI ++T + N+ + + + D ++ + I+ N+F +LE + A
Sbjct: 186 DWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVAD-RVNKDTTILLNTFNELESDVINA 244
Query: 235 VHQQYYLSIP-VFPIGPF----------HKCFPAXXXXXXXXXXXXXXWLDKQAPRSVIY 283
+ +IP ++PIGP H+ + WL+ + P SV+Y
Sbjct: 245 LSS----TIPSIYPIGPLPSLLKQTPQIHQ-LDSLDSNLWKEDTECLDWLESKEPGSVVY 299
Query: 284 VSFG---------LARGAEWLEPLPKGIL-----EMVDG---------------RGYIVK 314
V+FG L A L K L ++V G RG I
Sbjct: 300 VNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIAS 359
Query: 315 WAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQ 374
W PQ +VL HP++G F TH GWNST ESIC G+PM+C P+F DQ + R++ + W +G++
Sbjct: 360 WCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGME 419
Query: 375 LEGKLERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIM 433
++ ++R+E+ + I V+ ++M+++A L +K + + GG SY +L ++ ++
Sbjct: 420 IDTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVL 478
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 120/459 (26%), Positives = 200/459 (43%), Gaps = 51/459 (11%)
Query: 12 RNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITII-------HTTLNSPNSCNYPHFE 64
N V + PF H P+L L + +E +T + TL S ++ P+ +
Sbjct: 11 NNLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPNIK 70
Query: 65 FCSFSDDGFSETYQPSKVADDIPALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLI 124
+ + DG + Y S + P L I ++ + + E+ + CL+
Sbjct: 71 YYNV-HDGLPKGYVSSGNPRE-PIFLF------IKAMQENFKHVIDEAVAETGKNITCLV 122
Query: 125 TDAAWFIALSVANDFKLPTIVLLTDSIAASLSYAAFPILREK-GYLPIQDFQLEAPVIEF 183
TDA ++ +A + + L T + L++ ++REK G + D + + F
Sbjct: 123 TDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDVLPGF 182
Query: 184 PPLRVKDIP--LLKTQDSNNADKVLSLRDSQIMASSGIIWNSFEDLEQVELTAVHQQYYL 241
P L+ D+P ++K D A +L ++ ++ + NSF + + ++ ++ L
Sbjct: 183 PELKASDLPEGVIKDIDVPFA-TMLHKMGLELPRANAVAINSFATIHPLIENELNSKFKL 241
Query: 242 SIPVFPIGPFHKCFPAXXXXXXXXXXXXXXWLDKQAPRSVIYVSFG---------LARGA 292
+ +GPF+ P WLD+ SV+Y+SFG L A
Sbjct: 242 ---LLNVGPFNLTTP---QRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALA 295
Query: 293 EWLE----------------PLPKGILEMVDGRGYIVKWAPQQQVLAHPAVGCFWTHSGW 336
E LE LPKG LE +G IV WAPQ ++L H +VG F THSGW
Sbjct: 296 ESLEECGFPFIWSFRGDPKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGW 355
Query: 337 NSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLE-GKLERKEIERAILRVMVKA 395
NS LE I G+PMI +P+FGDQ +N+ +G+ ++ G L ++ I++A+ M
Sbjct: 356 NSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMSSE 415
Query: 396 DSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIMS 434
MR++ L E ++Q G+S L + S
Sbjct: 416 KGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIVTS 454
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 100/353 (28%), Positives = 164/353 (46%), Gaps = 45/353 (12%)
Query: 115 ESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAASLSYAAFPILREK-GYLPIQD 173
E+ +CL+ DA + A +A + + + T + ++ +REK G IQ
Sbjct: 108 ETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQG 167
Query: 174 FQLEAPVIEFPP----LRVKDI-PLLKTQDSNNADKVLSLRDSQIM-ASSGIIWNSFEDL 227
+ E ++ F P +R +D+ + + N+ + R Q++ ++ + NSFE+L
Sbjct: 168 REDE--LLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEEL 225
Query: 228 EQVELTAVHQQY--YLSIPVFPIGPFHKCFPAXXXXXXXXXXXXXXWLDKQAPRSVIYVS 285
+ + + YL+I GPF+ P WL ++ P SV+Y+S
Sbjct: 226 DDSLTNDLKSKLKTYLNI-----GPFNLITPPPVVPNTTGCLQ---WLKERKPTSVVYIS 277
Query: 286 FGLARG---------AEWLEP----------------LPKGILEMVDGRGYIVKWAPQQQ 320
FG +E LE LP+G LE G G +V WAPQ +
Sbjct: 278 FGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLEKTRGYGMVVPWAPQAE 337
Query: 321 VLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLE 380
VLAH AVG F TH GWNS ES+ G+P+IC+P+FGDQ +N R V +G+++EG +
Sbjct: 338 VLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVF 397
Query: 381 RKE-IERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHI 432
K + +++ + +++RE L E D + GSS ++ L D +
Sbjct: 398 TKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLV 450
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 120/466 (25%), Positives = 188/466 (40%), Gaps = 71/466 (15%)
Query: 17 VILFPLPFQGHINPMLQLGS-ILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSDDGFSE 75
V + P P GH+ P+++ +++ G ++T + P+ + S S
Sbjct: 9 VAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSS---ISS 65
Query: 76 TYQPSKVADDIPALLLSLNAKCIVPFRDCLANKLMSNAQESK--DSF-------ACLITD 126
+ P P L L++ + R L SN + K DSF L+ D
Sbjct: 66 VFLP-------PVDLTDLSSSTRIESRISL-TVTRSNPELRKVFDSFVEGGRLPTALVVD 117
Query: 127 AAWFIALSVANDFKLPTIVLLTDSIAASLSYAAFPILREKGYLPIQDFQLEAPVIEFPPL 186
A VA +F +P + + + P L E ++ + P+
Sbjct: 118 LFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLMLPGCVPV 177
Query: 187 RVKDIPLLKTQD-SNNADKVLSLRDSQIMASSGIIWNSFEDLEQVELTAVHQQYYLSIPV 245
KD L QD ++A K L + + GI+ N+F +LE + A+ + PV
Sbjct: 178 AGKDF-LDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPPV 236
Query: 246 FPIGPFHKCFPAXXXXXXXXXXXXXXWLDKQAPRSVIYVSFG------------LARG-- 291
+P+GP WLD Q SV+YVSFG LA G
Sbjct: 237 YPVGPLVNI--GKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLA 294
Query: 292 ---------------------------AEWLEPLPKGILEMVDGRGYIVK-WAPQQQVLA 323
+ L LP G LE RG+++ WAPQ QVLA
Sbjct: 295 DSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLA 354
Query: 324 HPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQL----EGKL 379
HP+ G F TH GWNSTLES+ GIP+I P + +Q +N+ +S R L+ +G +
Sbjct: 355 HPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLV 414
Query: 380 ERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSL 425
R+E+ R + +M + + +R + L E L+ G+S ++L
Sbjct: 415 RREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKAL 460
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 125/258 (48%), Gaps = 49/258 (18%)
Query: 216 SSGIIWNSFEDLEQVELTAVHQQYYLSIPVFPIGPFH--KCFPAXXXXXXXXXXXXXXWL 273
+ GII N+F DLEQ + A++ P++ +GP K P WL
Sbjct: 212 TKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQP-NPKLDQAQHDLILKWL 270
Query: 274 DKQAPRSVIY-------VSFGLAR-----------GAEWL-------EPLPKGILEM--V 306
D+Q +SV++ VSFG ++ G +L + P+G LE +
Sbjct: 271 DEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMEL 330
Query: 307 DGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVS 366
+G+G I WAPQ +VLAH A+G F +H GWNS LES+ G+P++ P + +Q +N+ +
Sbjct: 331 EGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLV 390
Query: 367 HAWRVGLQLEGKLER-------KEIERAILRVM-----VKADSQEMRERATYLNEKVDIC 414
W VGL L + +EIE+ + +M V QEM+E + N VD
Sbjct: 391 KEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSR--NAVVD-- 446
Query: 415 LQQGGSSYQSLGRLTDHI 432
GGSS S+G+L D I
Sbjct: 447 ---GGSSLISVGKLIDDI 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 125/258 (48%), Gaps = 49/258 (18%)
Query: 216 SSGIIWNSFEDLEQVELTAVHQQYYLSIPVFPIGPFH--KCFPAXXXXXXXXXXXXXXWL 273
+ GII N+F DLEQ + A++ P++ +GP K P WL
Sbjct: 212 TKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQP-NPKLDQAQHDLILKWL 270
Query: 274 DKQAPRSVIY-------VSFGLAR-----------GAEWL-------EPLPKGILEM--V 306
D+Q +SV++ VSFG ++ G +L + P+G LE +
Sbjct: 271 DEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMEL 330
Query: 307 DGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVS 366
+G+G I WAPQ +VLAH A+G F +H GWNS LES+ G+P++ P + +Q +N+ +
Sbjct: 331 EGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLV 390
Query: 367 HAWRVGLQLEGKLER-------KEIERAILRVM-----VKADSQEMRERATYLNEKVDIC 414
W VGL L + +EIE+ + +M V QEM+E + N VD
Sbjct: 391 KEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSR--NAVVD-- 446
Query: 415 LQQGGSSYQSLGRLTDHI 432
GGSS S+G+L D I
Sbjct: 447 ---GGSSLISVGKLIDDI 461
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 292 AEWLEPLPKGILEMVDGRG--------YIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESI 343
A L +P+ +L DG + KW PQ +L HP F TH G N E+I
Sbjct: 44 ASALAQIPQKVLWRFDGNKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAI 103
Query: 344 CEGIPMICQPYFGDQMVN 361
GIP + P F DQ N
Sbjct: 104 YHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 314 KWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGL 373
+W PQ +L + F TH+G ST+E++ +PM+ P +Q +N+ + V L
Sbjct: 311 QWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERI-----VEL 363
Query: 374 QLEGKLERKEIERAILR--VMVKADSQEMRERATYLNEKV 411
L + R ++ LR V+ A + ER + +++
Sbjct: 364 GLGRHIPRDQVTAEKLREAVLAVASDPGVAERLAAVRQEI 403
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 314 KWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRV-G 372
+W P VLAH A C TH + LE+ G+P++ P+F + S A RV
Sbjct: 287 QWIPFHSVLAH-ARACL-THGTTGAVLEAFAAGVPLVLVPHFATEAAPS-----AERVIE 339
Query: 373 LQLEGKLERKEIERAILRVMVK 394
L L L ++E A +R V+
Sbjct: 340 LGLGSVLRPDQLEPASIREAVE 361
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 12/108 (11%)
Query: 315 WAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQ 374
W PQ +L F TH+G + E + PMI P DQ N+ + GL
Sbjct: 290 WVPQLAILRQ--ADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQ-----GLG 342
Query: 375 LEGKLERKEIERAILR--VMVKADSQEMRERATYLNEKVDICLQQGGS 420
+ KL +E +LR + D E+ R + ++ Q+GG+
Sbjct: 343 VARKLATEEATADLLRETALALVDDPEVARRLRRIQAEM---AQEGGT 387
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 292 AEWLEPLPKGILEMVDGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMIC 351
A+ L+PLP+G+L G+ + P V+ H H G +TL + EG+P +
Sbjct: 276 AQTLQPLPEGVLAA--GQFPLSAIXPACDVVVH--------HGGHGTTLTCLSEGVPQVS 325
Query: 352 QPYFGDQMVNSRYVSHAWRVGLQL 375
P + ++R + HA G+++
Sbjct: 326 VPVIAEVWDSARLL-HAAGAGVEV 348
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 292 AEWLEPLPKGILEMVDGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMIC 351
A+ L+PLP+G+L G+ + P V+ H H G +TL + EG+P +
Sbjct: 275 AQTLQPLPEGVLAA--GQFPLSAIXPACDVVVH--------HGGHGTTLTCLSEGVPQVS 324
Query: 352 QPYFGDQMVNSRYVSHAWRVGLQL 375
P + ++R + HA G+++
Sbjct: 325 VPVIAEVWDSARLL-HAAGAGVEV 347
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 314 KWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQM 359
W PQ +L H V H G +TL ++ G+P + P+ GD
Sbjct: 298 SWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|3MJF|A Chain A, Phosphoribosylamine-Glycine Ligase From Yersinia Pestis
Length = 431
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 309 RGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHA 368
+G ++ PQQ+V F + N E + G ++C G+ + ++ ++
Sbjct: 350 QGDVIHGLPQQEVKDGK---VFHAGTKLNGNHEVVTNGGRVLCVTALGETVAQAQQYAYQ 406
Query: 369 WRVGLQLEGKLERKEIE-RAILR 390
G+Q EG RK+I RAI R
Sbjct: 407 LAEGIQWEGVFCRKDIGYRAIAR 429
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,581,551
Number of Sequences: 62578
Number of extensions: 495340
Number of successful extensions: 883
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 851
Number of HSP's gapped (non-prelim): 21
length of query: 435
length of database: 14,973,337
effective HSP length: 102
effective length of query: 333
effective length of database: 8,590,381
effective search space: 2860596873
effective search space used: 2860596873
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)