Query 013836
Match_columns 435
No_of_seqs 122 out of 1419
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 07:52:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 7.3E-65 1.6E-69 494.4 44.6 411 13-435 6-451 (451)
2 PLN02173 UDP-glucosyl transfer 100.0 3.1E-62 6.7E-67 473.7 42.0 399 13-433 4-447 (449)
3 PLN02555 limonoid glucosyltran 100.0 4.3E-62 9.3E-67 476.6 41.8 404 14-434 7-469 (480)
4 PLN02562 UDP-glycosyltransfera 100.0 2.2E-61 4.8E-66 471.4 40.9 403 14-433 6-448 (448)
5 PLN02207 UDP-glycosyltransfera 100.0 2.6E-60 5.6E-65 462.0 42.8 413 12-434 1-465 (468)
6 PLN02992 coniferyl-alcohol glu 100.0 1.5E-60 3.3E-65 464.4 40.5 402 13-434 4-469 (481)
7 PLN02152 indole-3-acetate beta 100.0 3.7E-60 7.9E-65 460.0 42.0 397 12-432 1-454 (455)
8 PLN02210 UDP-glucosyl transfer 100.0 3.2E-60 6.8E-65 463.7 41.6 399 13-433 7-454 (456)
9 PLN02448 UDP-glycosyltransfera 100.0 4.4E-60 9.6E-65 465.8 40.8 410 11-434 7-457 (459)
10 PLN00164 glucosyltransferase; 100.0 8.4E-60 1.8E-64 463.6 42.3 406 12-434 1-473 (480)
11 PLN03015 UDP-glucosyl transfer 100.0 4.3E-59 9.4E-64 451.6 41.1 405 12-432 1-466 (470)
12 PLN02863 UDP-glucoronosyl/UDP- 100.0 4.6E-59 9.9E-64 456.9 41.1 411 11-434 6-471 (477)
13 PLN02208 glycosyltransferase f 100.0 4.1E-59 9E-64 453.0 38.9 388 13-434 3-439 (442)
14 PLN02554 UDP-glycosyltransfera 100.0 6.8E-59 1.5E-63 459.0 40.0 405 14-434 2-478 (481)
15 PLN03004 UDP-glycosyltransfera 100.0 5.3E-59 1.2E-63 451.4 38.4 398 12-423 1-450 (451)
16 PLN03007 UDP-glucosyltransfera 100.0 8.9E-59 1.9E-63 458.8 40.8 410 13-435 4-481 (482)
17 PLN02670 transferase, transfer 100.0 7.2E-59 1.6E-63 452.3 38.9 400 14-434 6-465 (472)
18 PLN02764 glycosyltransferase f 100.0 1.4E-58 3E-63 446.8 38.9 388 14-434 5-445 (453)
19 PLN02534 UDP-glycosyltransfera 100.0 1.9E-58 4.1E-63 451.5 40.2 410 14-434 8-486 (491)
20 PLN02167 UDP-glycosyltransfera 100.0 1.4E-57 3.1E-62 448.9 42.2 413 12-434 1-472 (475)
21 PLN00414 glycosyltransferase f 100.0 1.2E-57 2.6E-62 443.3 37.9 388 13-434 3-440 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 5.5E-50 1.2E-54 396.7 21.7 392 15-432 21-465 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 2.1E-51 4.5E-56 413.5 -6.8 369 16-413 2-425 (500)
24 cd03784 GT1_Gtf_like This fami 100.0 4.7E-41 1E-45 329.4 23.2 360 15-429 1-399 (401)
25 TIGR01426 MGT glycosyltransfer 100.0 1.1E-40 2.3E-45 325.6 24.7 354 21-433 2-391 (392)
26 COG1819 Glycosyl transferases, 100.0 9.2E-39 2E-43 308.5 15.4 375 14-433 1-400 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 4.6E-38 1E-42 316.7 16.7 370 14-413 5-438 (496)
28 PF13528 Glyco_trans_1_3: Glyc 99.9 1.1E-22 2.3E-27 193.2 22.8 295 15-391 1-317 (318)
29 PRK12446 undecaprenyldiphospho 99.9 5.9E-22 1.3E-26 189.2 27.3 302 15-406 2-335 (352)
30 TIGR00661 MJ1255 conserved hyp 99.9 5E-21 1.1E-25 181.5 21.5 87 306-401 227-318 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.8 1.4E-18 3E-23 164.1 26.5 82 310-394 237-324 (357)
32 PRK00726 murG undecaprenyldiph 99.8 1.2E-16 2.5E-21 154.3 28.2 115 309-433 236-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.7 1.5E-15 3.1E-20 146.3 27.4 96 307-408 234-335 (350)
34 COG4671 Predicted glycosyl tra 99.6 5.2E-14 1.1E-18 127.0 21.4 311 13-394 8-365 (400)
35 TIGR01133 murG undecaprenyldip 99.6 1.6E-13 3.6E-18 131.9 26.3 86 317-408 243-332 (348)
36 TIGR00215 lpxB lipid-A-disacch 99.6 9.9E-14 2.1E-18 134.5 20.4 106 318-430 261-384 (385)
37 PRK13609 diacylglycerol glucos 99.6 1.2E-13 2.5E-18 134.6 20.1 113 307-432 255-369 (380)
38 TIGR03590 PseG pseudaminic aci 99.5 1.3E-12 2.8E-17 120.9 16.2 55 307-364 223-278 (279)
39 PRK00025 lpxB lipid-A-disaccha 99.4 1.3E-11 2.8E-16 120.2 20.9 107 319-433 256-376 (380)
40 PRK13608 diacylglycerol glucos 99.4 1.4E-11 3E-16 120.2 20.4 115 307-434 255-371 (391)
41 PF04101 Glyco_tran_28_C: Glyc 99.4 2.5E-13 5.5E-18 116.1 2.9 84 308-394 55-144 (167)
42 PF03033 Glyco_transf_28: Glyc 99.3 6.8E-14 1.5E-18 115.8 -1.9 130 17-153 1-134 (139)
43 cd03814 GT1_like_2 This family 99.3 2.3E-08 5E-13 96.0 30.9 111 306-431 245-362 (364)
44 PLN02871 UDP-sulfoquinovose:DA 99.2 2.7E-08 6E-13 99.5 31.5 79 308-394 312-400 (465)
45 PLN02605 monogalactosyldiacylg 99.2 2.1E-09 4.4E-14 104.7 21.0 113 308-432 265-379 (382)
46 TIGR03492 conserved hypothetic 99.1 5.7E-09 1.2E-13 101.5 20.6 109 310-431 281-395 (396)
47 cd04962 GT1_like_5 This family 99.1 8.4E-08 1.8E-12 92.9 26.8 113 307-434 252-370 (371)
48 cd03818 GT1_ExpC_like This fam 99.1 2.3E-07 5E-12 90.9 29.3 79 308-394 281-366 (396)
49 PRK10307 putative glycosyl tra 99.1 5.3E-07 1.1E-11 88.9 31.8 114 308-434 284-407 (412)
50 cd03794 GT1_wbuB_like This fam 99.1 1.6E-07 3.5E-12 90.7 27.2 81 307-395 274-366 (394)
51 cd03800 GT1_Sucrose_synthase T 99.1 2.9E-07 6.3E-12 89.9 28.9 80 307-394 282-368 (398)
52 cd03823 GT1_ExpE7_like This fa 99.0 1.1E-07 2.4E-12 91.1 24.6 81 306-394 241-329 (359)
53 cd03808 GT1_cap1E_like This fa 99.0 9.1E-07 2E-11 84.4 29.2 80 307-394 245-329 (359)
54 cd03816 GT1_ALG1_like This fam 99.0 4.4E-07 9.5E-12 89.4 26.9 91 308-408 294-399 (415)
55 cd03817 GT1_UGDG_like This fam 99.0 1E-06 2.2E-11 84.7 28.3 95 307-410 258-360 (374)
56 COG3980 spsG Spore coat polysa 98.9 5.9E-08 1.3E-12 85.8 16.3 98 308-412 210-308 (318)
57 TIGR03449 mycothiol_MshA UDP-N 98.9 3.5E-06 7.5E-11 82.8 29.7 80 307-394 282-368 (405)
58 cd03801 GT1_YqgM_like This fam 98.9 2.9E-06 6.3E-11 81.0 28.1 112 306-432 254-373 (374)
59 TIGR02468 sucrsPsyn_pln sucros 98.9 9.9E-06 2.1E-10 85.8 32.0 92 307-406 547-650 (1050)
60 cd03795 GT1_like_4 This family 98.8 2.9E-06 6.3E-11 81.5 25.6 84 307-395 243-333 (357)
61 cd03798 GT1_wlbH_like This fam 98.8 8.6E-06 1.9E-10 78.0 27.9 110 307-435 258-377 (377)
62 cd03820 GT1_amsD_like This fam 98.8 1.1E-05 2.4E-10 76.5 26.9 89 308-407 235-329 (348)
63 TIGR02472 sucr_P_syn_N sucrose 98.7 6E-05 1.3E-09 74.9 32.0 80 307-394 316-406 (439)
64 cd03805 GT1_ALG2_like This fam 98.7 7.9E-06 1.7E-10 79.8 25.1 91 307-406 279-377 (392)
65 PRK05749 3-deoxy-D-manno-octul 98.7 2.3E-05 5E-10 77.6 28.3 103 320-433 315-422 (425)
66 cd03825 GT1_wcfI_like This fam 98.7 1.1E-05 2.3E-10 77.8 25.5 114 306-434 242-364 (365)
67 PF04007 DUF354: Protein of un 98.7 2.4E-06 5.1E-11 80.4 19.9 114 15-152 1-115 (335)
68 cd03796 GT1_PIG-A_like This fa 98.6 2.7E-05 5.9E-10 76.3 26.3 78 307-394 249-333 (398)
69 cd03819 GT1_WavL_like This fam 98.6 2.5E-05 5.5E-10 74.9 25.7 79 307-393 245-329 (355)
70 cd05844 GT1_like_7 Glycosyltra 98.6 1.7E-05 3.6E-10 76.7 24.0 81 306-394 243-336 (367)
71 cd03821 GT1_Bme6_like This fam 98.6 7.4E-05 1.6E-09 71.6 28.5 78 307-394 261-345 (375)
72 cd03799 GT1_amsK_like This is 98.6 2.2E-05 4.7E-10 75.3 22.9 82 306-395 234-328 (355)
73 cd03822 GT1_ecORF704_like This 98.6 6E-05 1.3E-09 72.4 25.6 109 307-432 246-365 (366)
74 cd03786 GT1_UDP-GlcNAc_2-Epime 98.5 1E-06 2.2E-11 85.3 13.1 78 307-394 257-337 (363)
75 cd03811 GT1_WabH_like This fam 98.5 6.7E-05 1.5E-09 71.1 23.5 80 307-394 245-332 (353)
76 TIGR02470 sucr_synth sucrose s 98.5 0.00062 1.3E-08 70.9 31.2 78 307-392 618-707 (784)
77 cd03802 GT1_AviGT4_like This f 98.4 1.9E-05 4.2E-10 75.1 18.8 78 307-394 223-308 (335)
78 cd03807 GT1_WbnK_like This fam 98.4 0.00021 4.6E-09 68.2 26.2 107 308-430 251-362 (365)
79 cd04955 GT1_like_6 This family 98.4 0.00047 1E-08 66.3 28.1 108 307-432 247-362 (363)
80 PRK14089 ipid-A-disaccharide s 98.4 4.1E-05 8.9E-10 72.7 19.6 97 319-429 230-345 (347)
81 PRK09922 UDP-D-galactose:(gluc 98.4 0.00012 2.7E-09 70.6 23.1 98 306-411 234-344 (359)
82 cd04951 GT1_WbdM_like This fam 98.3 0.00042 9E-09 66.5 24.8 109 307-431 244-357 (360)
83 TIGR03087 stp1 sugar transfera 98.3 0.00042 9E-09 67.9 24.4 110 307-433 279-395 (397)
84 TIGR02149 glgA_Coryne glycogen 98.2 0.0025 5.4E-08 62.1 28.3 78 309-394 261-352 (388)
85 TIGR03088 stp2 sugar transfera 98.2 0.0014 3.1E-08 63.5 26.4 112 308-434 255-372 (374)
86 PLN02275 transferase, transfer 98.2 0.0016 3.6E-08 63.1 26.5 75 308-392 286-371 (371)
87 PLN02846 digalactosyldiacylgly 98.2 0.00081 1.8E-08 66.3 23.6 71 313-394 289-363 (462)
88 PLN00142 sucrose synthase 98.1 0.001 2.2E-08 69.4 24.5 77 308-392 642-730 (815)
89 cd03812 GT1_CapH_like This fam 98.1 0.0011 2.4E-08 63.6 23.3 86 307-404 248-338 (358)
90 cd03809 GT1_mtfB_like This fam 98.0 0.002 4.4E-08 61.6 22.9 90 306-408 251-347 (365)
91 PF02684 LpxB: Lipid-A-disacch 98.0 0.0017 3.7E-08 62.2 21.5 100 318-425 254-368 (373)
92 KOG3349 Predicted glycosyltran 98.0 2.5E-05 5.3E-10 62.5 7.1 62 313-377 68-134 (170)
93 PRK15179 Vi polysaccharide bio 98.0 0.0064 1.4E-07 63.2 26.8 95 307-408 573-674 (694)
94 cd03792 GT1_Trehalose_phosphor 97.9 0.0049 1.1E-07 59.8 23.8 113 307-435 251-372 (372)
95 PRK00654 glgA glycogen synthas 97.9 0.00069 1.5E-08 67.9 18.1 84 306-393 335-427 (466)
96 cd03806 GT1_ALG11_like This fa 97.8 0.0036 7.8E-08 61.8 21.4 80 307-395 304-393 (419)
97 PLN02949 transferase, transfer 97.8 0.0021 4.6E-08 64.0 19.2 111 307-433 334-455 (463)
98 PLN02501 digalactosyldiacylgly 97.7 0.028 6E-07 57.5 25.0 75 309-394 602-681 (794)
99 PRK01021 lpxB lipid-A-disaccha 97.7 0.015 3.4E-07 58.5 23.2 90 319-412 483-590 (608)
100 cd04950 GT1_like_1 Glycosyltra 97.7 0.056 1.2E-06 52.5 28.1 78 307-394 253-340 (373)
101 TIGR03568 NeuC_NnaA UDP-N-acet 97.7 0.0024 5.3E-08 61.6 17.0 75 307-393 261-338 (365)
102 COG0381 WecB UDP-N-acetylgluco 97.6 0.0043 9.3E-08 58.5 16.7 107 309-432 263-372 (383)
103 TIGR02095 glgA glycogen/starch 97.6 0.016 3.5E-07 58.2 21.9 112 306-434 344-472 (473)
104 PRK15484 lipopolysaccharide 1, 97.6 0.00089 1.9E-08 65.2 12.2 116 305-434 254-377 (380)
105 TIGR00236 wecB UDP-N-acetylglu 97.5 0.0003 6.4E-09 68.1 8.4 107 308-431 255-364 (365)
106 PLN02316 synthase/transferase 97.5 0.15 3.3E-06 55.0 28.7 84 307-394 899-998 (1036)
107 COG1817 Uncharacterized protei 97.5 0.033 7.1E-07 50.8 20.0 116 15-153 1-117 (346)
108 PF02350 Epimerase_2: UDP-N-ac 97.5 0.0021 4.5E-08 61.5 13.3 103 308-428 239-345 (346)
109 PRK09814 beta-1,6-galactofuran 97.5 0.00095 2.1E-08 63.7 10.5 113 306-431 205-332 (333)
110 cd03791 GT1_Glycogen_synthase_ 97.4 0.056 1.2E-06 54.3 22.8 84 307-394 350-442 (476)
111 PRK15427 colanic acid biosynth 97.3 0.0023 4.9E-08 62.9 11.8 114 307-435 278-406 (406)
112 COG0763 LpxB Lipid A disacchar 97.2 0.026 5.6E-07 53.3 16.9 106 320-433 260-380 (381)
113 PF00534 Glycos_transf_1: Glyc 97.2 0.0015 3.4E-08 55.5 8.2 89 306-405 71-166 (172)
114 cd04946 GT1_AmsK_like This fam 97.0 0.003 6.5E-08 62.1 9.0 83 308-395 289-378 (407)
115 cd03804 GT1_wbaZ_like This fam 96.9 0.005 1.1E-07 59.1 9.5 84 304-395 238-327 (351)
116 cd04949 GT1_gtfA_like This fam 96.8 0.004 8.7E-08 60.3 7.8 101 307-412 260-364 (372)
117 cd01635 Glycosyltransferase_GT 96.8 0.088 1.9E-06 46.3 15.8 50 307-358 160-217 (229)
118 TIGR02918 accessory Sec system 96.7 0.0087 1.9E-07 60.2 9.8 115 307-435 375-500 (500)
119 COG1519 KdtA 3-deoxy-D-manno-o 96.7 0.018 3.9E-07 54.9 10.9 73 330-410 327-399 (419)
120 PF13477 Glyco_trans_4_2: Glyc 96.6 0.039 8.5E-07 45.0 11.2 104 16-149 1-108 (139)
121 COG5017 Uncharacterized conser 96.5 0.013 2.7E-07 46.5 6.9 72 318-392 59-140 (161)
122 cd03813 GT1_like_3 This family 96.2 0.05 1.1E-06 54.7 11.3 81 307-394 353-442 (475)
123 PRK10125 putative glycosyl tra 96.1 1.5 3.3E-05 43.0 26.1 72 309-389 287-366 (405)
124 PF13844 Glyco_transf_41: Glyc 96.1 0.04 8.8E-07 54.1 9.7 117 307-433 341-465 (468)
125 PHA01633 putative glycosyl tra 95.9 0.041 8.9E-07 52.1 8.8 103 306-412 199-325 (335)
126 PF13579 Glyco_trans_4_4: Glyc 95.7 0.02 4.3E-07 47.5 5.3 96 30-148 6-104 (160)
127 PF13692 Glyco_trans_1_4: Glyc 95.6 0.015 3.3E-07 47.1 4.0 80 307-394 52-135 (135)
128 PF13524 Glyco_trans_1_2: Glyc 95.5 0.12 2.7E-06 38.6 8.6 82 333-429 9-91 (92)
129 PF12000 Glyco_trans_4_3: Gkyc 95.4 0.21 4.5E-06 42.2 10.1 95 40-149 1-97 (171)
130 PRK15490 Vi polysaccharide bio 94.9 0.23 5E-06 50.0 10.5 74 307-388 454-532 (578)
131 TIGR02400 trehalose_OtsA alpha 94.1 0.64 1.4E-05 46.4 11.7 104 314-434 342-456 (456)
132 PRK14098 glycogen synthase; Pr 92.6 0.59 1.3E-05 47.1 8.9 84 305-392 359-449 (489)
133 PHA01630 putative group 1 glyc 92.4 0.41 8.9E-06 45.5 7.0 111 316-434 198-330 (331)
134 PF13439 Glyco_transf_4: Glyco 91.2 1.8 3.9E-05 36.1 9.3 29 24-52 11-39 (177)
135 PRK10017 colanic acid biosynth 91.2 1.4 3E-05 43.4 9.4 84 320-412 323-408 (426)
136 PRK02261 methylaspartate mutas 89.6 0.72 1.6E-05 37.6 5.0 40 12-51 1-40 (137)
137 PF02951 GSH-S_N: Prokaryotic 89.4 0.63 1.4E-05 36.7 4.3 37 15-51 1-40 (119)
138 PRK13932 stationary phase surv 89.3 13 0.00028 33.8 13.2 39 13-53 4-42 (257)
139 PRK10916 ADP-heptose:LPS hepto 88.8 3.4 7.3E-05 39.6 9.9 103 15-145 1-106 (348)
140 cd03788 GT1_TPS Trehalose-6-Ph 88.4 2.6 5.6E-05 42.2 9.0 102 313-431 346-458 (460)
141 PRK10422 lipopolysaccharide co 87.4 7.2 0.00016 37.4 11.2 107 13-145 4-113 (352)
142 TIGR00236 wecB UDP-N-acetylglu 87.3 1.8 4E-05 41.7 7.1 35 15-50 1-36 (365)
143 PF08660 Alg14: Oligosaccharid 86.9 1.3 2.7E-05 37.7 4.9 111 20-149 3-130 (170)
144 TIGR03713 acc_sec_asp1 accesso 86.6 1.9 4.1E-05 43.7 6.9 92 308-412 409-507 (519)
145 COG4370 Uncharacterized protei 85.7 3 6.4E-05 38.3 6.8 97 309-413 295-396 (412)
146 PLN03063 alpha,alpha-trehalose 85.6 6.5 0.00014 42.2 10.6 87 314-412 362-460 (797)
147 cd03793 GT1_Glycogen_synthase_ 85.2 3 6.4E-05 42.4 7.2 75 317-394 467-552 (590)
148 PRK10964 ADP-heptose:LPS hepto 83.9 4.6 0.0001 38.1 7.9 50 15-64 1-52 (322)
149 PLN02939 transferase, transfer 83.6 6.3 0.00014 42.5 9.2 83 307-393 836-930 (977)
150 KOG4626 O-linked N-acetylgluco 83.5 1.8 3.8E-05 43.7 4.7 43 334-377 846-889 (966)
151 COG2910 Putative NADH-flavin r 82.3 1.6 3.5E-05 37.0 3.5 34 15-52 1-34 (211)
152 COG0438 RfaG Glycosyltransfera 82.2 12 0.00026 34.5 10.1 79 308-394 257-342 (381)
153 TIGR00715 precor6x_red precorr 81.2 18 0.00039 32.9 10.2 32 15-51 1-32 (256)
154 PF02441 Flavoprotein: Flavopr 80.5 3.4 7.3E-05 33.2 4.8 36 15-51 1-36 (129)
155 COG1618 Predicted nucleotide k 80.4 5.9 0.00013 33.0 6.0 56 13-69 4-59 (179)
156 PRK13934 stationary phase surv 80.1 46 0.001 30.4 12.2 37 15-53 1-37 (266)
157 COG1703 ArgK Putative periplas 79.4 38 0.00082 31.5 11.3 43 14-56 51-93 (323)
158 TIGR02193 heptsyl_trn_I lipopo 78.9 5.5 0.00012 37.6 6.4 109 16-146 1-112 (319)
159 PF04464 Glyphos_transf: CDP-G 78.9 3.5 7.5E-05 39.9 5.1 108 308-427 252-366 (369)
160 cd02067 B12-binding B12 bindin 78.3 3.2 7E-05 32.7 4.0 36 16-51 1-36 (119)
161 PRK00346 surE 5'(3')-nucleotid 78.1 53 0.0012 29.8 12.6 37 15-53 1-37 (250)
162 TIGR02201 heptsyl_trn_III lipo 78.1 18 0.00039 34.4 9.8 105 16-145 1-108 (344)
163 PF01975 SurE: Survival protei 78.0 4.8 0.0001 35.0 5.2 39 15-54 1-39 (196)
164 PRK13933 stationary phase surv 77.5 56 0.0012 29.7 12.5 38 15-54 1-38 (253)
165 PRK13935 stationary phase surv 77.2 57 0.0012 29.6 12.5 37 15-53 1-37 (253)
166 PF12146 Hydrolase_4: Putative 76.4 7.3 0.00016 28.2 5.0 37 14-50 15-51 (79)
167 COG0496 SurE Predicted acid ph 75.8 25 0.00054 31.7 9.1 37 15-54 1-38 (252)
168 PRK14099 glycogen synthase; Pr 75.4 4.5 9.7E-05 40.8 4.9 84 307-394 349-447 (485)
169 TIGR00087 surE 5'/3'-nucleotid 74.8 43 0.00094 30.2 10.5 37 15-54 1-38 (244)
170 TIGR02919 accessory Sec system 74.3 19 0.0004 35.8 8.8 89 308-407 328-422 (438)
171 PF04127 DFP: DNA / pantothena 74.0 5.6 0.00012 34.2 4.5 22 31-52 32-53 (185)
172 COG0003 ArsA Predicted ATPase 73.5 40 0.00087 31.9 10.4 40 15-54 2-42 (322)
173 COG2185 Sbm Methylmalonyl-CoA 72.2 6.4 0.00014 32.0 4.1 39 12-50 10-48 (143)
174 PF09314 DUF1972: Domain of un 71.8 64 0.0014 27.7 11.8 44 26-69 17-62 (185)
175 PRK08305 spoVFB dipicolinate s 71.6 6.1 0.00013 34.3 4.1 39 13-51 4-42 (196)
176 cd03789 GT1_LPS_heptosyltransf 71.6 26 0.00057 32.2 8.8 102 16-145 1-105 (279)
177 TIGR02195 heptsyl_trn_II lipop 70.3 21 0.00046 33.8 8.1 101 16-144 1-104 (334)
178 PRK01175 phosphoribosylformylg 69.8 50 0.0011 30.2 9.9 59 12-74 1-59 (261)
179 PRK14099 glycogen synthase; Pr 69.4 14 0.00031 37.1 7.0 41 12-52 1-47 (485)
180 PRK11519 tyrosine kinase; Prov 68.6 1.1E+02 0.0024 32.6 13.7 40 14-53 525-566 (719)
181 PRK14501 putative bifunctional 67.6 29 0.00064 37.0 9.1 109 312-433 346-461 (726)
182 COG0859 RfaF ADP-heptose:LPS h 66.6 27 0.00059 33.2 8.0 106 14-146 1-108 (334)
183 PRK09620 hypothetical protein; 66.2 20 0.00044 32.0 6.5 39 13-51 2-52 (229)
184 PRK13982 bifunctional SbtC-lik 65.5 17 0.00038 36.2 6.4 42 11-52 253-306 (475)
185 KOG2941 Beta-1,4-mannosyltrans 65.2 70 0.0015 30.4 9.7 60 10-69 8-69 (444)
186 PF02310 B12-binding: B12 bind 64.9 15 0.00032 28.8 4.9 36 15-50 1-36 (121)
187 cd02070 corrinoid_protein_B12- 63.7 16 0.00034 31.9 5.2 39 13-51 81-119 (201)
188 TIGR03029 EpsG chain length de 63.2 1.2E+02 0.0026 27.7 11.8 38 14-51 102-141 (274)
189 COG1663 LpxK Tetraacyldisaccha 63.1 23 0.0005 33.4 6.3 36 17-52 52-87 (336)
190 PRK05986 cob(I)alamin adenolsy 62.6 1E+02 0.0022 26.7 9.8 101 12-130 20-126 (191)
191 TIGR02370 pyl_corrinoid methyl 62.6 16 0.00036 31.7 5.2 41 12-52 82-122 (197)
192 COG2894 MinD Septum formation 62.0 41 0.00089 29.8 7.2 42 15-56 2-45 (272)
193 TIGR00347 bioD dethiobiotin sy 60.9 39 0.00085 28.1 7.1 29 22-50 6-34 (166)
194 PRK06249 2-dehydropantoate 2-r 60.4 12 0.00026 35.2 4.2 36 11-51 2-37 (313)
195 PRK01077 cobyrinic acid a,c-di 60.0 44 0.00094 33.4 8.3 35 16-50 5-40 (451)
196 PRK00090 bioD dithiobiotin syn 59.9 81 0.0017 27.7 9.3 34 17-50 2-36 (222)
197 PRK05632 phosphate acetyltrans 59.7 1.5E+02 0.0033 31.4 12.6 102 16-150 4-116 (684)
198 PRK14098 glycogen synthase; Pr 58.8 17 0.00036 36.8 5.1 40 13-52 4-49 (489)
199 COG0052 RpsB Ribosomal protein 58.4 31 0.00067 30.9 6.0 35 120-154 157-193 (252)
200 TIGR02015 BchY chlorophyllide 57.2 39 0.00085 33.4 7.3 94 16-147 287-380 (422)
201 PF02374 ArsA_ATPase: Anion-tr 56.8 16 0.00036 34.2 4.4 40 15-54 1-41 (305)
202 COG2861 Uncharacterized protei 56.7 82 0.0018 28.2 8.2 38 99-145 138-178 (250)
203 TIGR00708 cobA cob(I)alamin ad 55.6 1.1E+02 0.0023 26.1 8.6 95 16-129 7-107 (173)
204 KOG0853 Glycosyltransferase [C 55.5 9.7 0.00021 37.9 2.7 60 338-405 381-441 (495)
205 cd01425 RPS2 Ribosomal protein 55.2 29 0.00064 30.0 5.4 34 118-151 126-161 (193)
206 PRK06732 phosphopantothenate-- 55.1 17 0.00038 32.4 4.1 19 32-50 30-48 (229)
207 cd02071 MM_CoA_mut_B12_BD meth 54.2 22 0.00047 28.2 4.1 36 16-51 1-36 (122)
208 PF02606 LpxK: Tetraacyldisacc 53.6 75 0.0016 30.1 8.3 38 15-52 38-75 (326)
209 TIGR02852 spore_dpaB dipicolin 53.4 18 0.00039 31.1 3.7 36 16-51 2-37 (187)
210 PRK14569 D-alanyl-alanine synt 52.9 29 0.00064 32.3 5.5 39 12-50 1-43 (296)
211 COG4394 Uncharacterized protei 52.7 1.9E+02 0.0041 26.8 9.9 115 309-434 239-367 (370)
212 COG0205 PfkA 6-phosphofructoki 52.3 41 0.0009 32.1 6.2 118 14-146 2-124 (347)
213 TIGR01425 SRP54_euk signal rec 52.2 94 0.002 30.7 8.9 40 15-54 101-140 (429)
214 cd07035 TPP_PYR_POX_like Pyrim 51.8 27 0.00059 28.7 4.6 28 325-354 60-93 (155)
215 PF06564 YhjQ: YhjQ protein; 51.8 1.3E+02 0.0028 27.2 9.0 29 23-51 11-39 (243)
216 PRK13931 stationary phase surv 51.5 1.4E+02 0.003 27.3 9.3 24 31-54 16-42 (261)
217 PRK10867 signal recognition pa 51.1 77 0.0017 31.4 8.1 41 14-54 100-141 (433)
218 PRK04940 hypothetical protein; 50.4 46 0.001 28.4 5.7 31 119-149 60-91 (180)
219 PRK13604 luxD acyl transferase 49.8 41 0.00089 31.5 5.7 38 13-50 35-72 (307)
220 PRK07313 phosphopantothenoylcy 48.9 23 0.0005 30.4 3.7 37 15-52 2-38 (182)
221 PF08323 Glyco_transf_5: Starc 48.1 15 0.00033 33.2 2.6 23 30-52 21-43 (245)
222 PRK12475 thiamine/molybdopteri 48.1 65 0.0014 30.8 7.0 34 13-51 23-57 (338)
223 PRK13869 plasmid-partitioning 47.4 38 0.00082 33.3 5.4 47 7-53 113-161 (405)
224 COG1797 CobB Cobyrinic acid a, 46.4 18 0.00039 35.3 2.9 33 17-49 3-36 (451)
225 PLN02939 transferase, transfer 46.3 35 0.00076 37.1 5.2 42 12-53 479-526 (977)
226 PRK06849 hypothetical protein; 46.2 38 0.00082 33.0 5.3 35 13-51 3-37 (389)
227 PF05159 Capsule_synth: Capsul 46.1 17 0.00037 33.3 2.7 43 309-354 184-226 (269)
228 cd02069 methionine_synthase_B1 46.0 42 0.00092 29.6 5.0 39 13-51 87-125 (213)
229 PF01210 NAD_Gly3P_dh_N: NAD-d 45.0 17 0.00037 30.2 2.3 31 16-51 1-31 (157)
230 cd01421 IMPCH Inosine monophos 45.0 38 0.00081 29.1 4.3 88 28-127 10-99 (187)
231 COG0240 GpsA Glycerol-3-phosph 44.5 95 0.0021 29.4 7.2 127 14-156 1-141 (329)
232 COG0132 BioD Dethiobiotin synt 44.4 1.9E+02 0.0041 25.8 8.7 36 15-50 2-39 (223)
233 TIGR01380 glut_syn glutathione 44.4 30 0.00065 32.6 4.1 37 15-51 1-40 (312)
234 KOG3339 Predicted glycosyltran 44.2 54 0.0012 28.0 5.0 36 15-51 39-76 (211)
235 COG1484 DnaC DNA replication p 43.9 36 0.00079 30.9 4.4 39 13-51 104-142 (254)
236 PRK05920 aromatic acid decarbo 43.2 35 0.00075 29.9 4.0 37 14-51 3-39 (204)
237 PRK00207 sulfur transfer compl 43.2 55 0.0012 26.2 4.9 36 15-50 1-40 (128)
238 cd07039 TPP_PYR_POX Pyrimidine 43.1 81 0.0018 26.4 6.1 29 324-354 63-97 (164)
239 PRK05647 purN phosphoribosylgl 42.7 1.2E+02 0.0025 26.5 7.2 52 15-69 2-58 (200)
240 TIGR01007 eps_fam capsular exo 42.4 50 0.0011 28.6 5.0 41 13-53 15-57 (204)
241 cd00561 CobA_CobO_BtuR ATP:cor 42.2 2E+02 0.0044 24.0 10.8 97 16-130 4-106 (159)
242 PF06925 MGDG_synth: Monogalac 41.4 75 0.0016 26.6 5.8 23 27-49 1-24 (169)
243 PRK09841 cryptic autophosphory 41.3 4.8E+02 0.01 28.0 13.8 40 14-53 530-571 (726)
244 PRK01911 ppnK inorganic polyph 41.2 45 0.00097 31.1 4.6 57 320-394 60-120 (292)
245 PLN02929 NADH kinase 40.9 41 0.0009 31.4 4.3 68 321-394 61-137 (301)
246 cd02037 MRP-like MRP (Multiple 40.7 1.3E+02 0.0029 25.0 7.2 33 21-53 7-39 (169)
247 PRK02797 4-alpha-L-fucosyltran 40.5 93 0.002 29.1 6.4 79 308-391 206-291 (322)
248 PRK05595 replicative DNA helic 40.3 1E+02 0.0023 30.6 7.4 35 17-51 204-239 (444)
249 PF10083 DUF2321: Uncharacteri 40.0 49 0.0011 27.3 4.0 71 351-430 77-147 (158)
250 PRK06029 3-octaprenyl-4-hydrox 39.8 43 0.00094 28.8 4.0 36 15-51 2-38 (185)
251 PRK01372 ddl D-alanine--D-alan 39.7 53 0.0012 30.6 5.0 41 11-51 1-45 (304)
252 KOG0780 Signal recognition par 38.9 1.5E+02 0.0032 28.9 7.4 38 15-52 102-139 (483)
253 cd07038 TPP_PYR_PDC_IPDC_like 38.8 57 0.0012 27.3 4.5 26 329-354 62-93 (162)
254 TIGR00959 ffh signal recogniti 38.6 1.4E+02 0.0031 29.5 7.8 40 14-53 99-139 (428)
255 PRK13768 GTPase; Provisional 38.6 99 0.0022 28.0 6.4 37 16-52 4-40 (253)
256 PF05225 HTH_psq: helix-turn-h 38.4 43 0.00093 21.2 2.8 26 380-407 1-26 (45)
257 cd01141 TroA_d Periplasmic bin 38.1 50 0.0011 28.1 4.2 37 105-148 62-100 (186)
258 PF00551 Formyl_trans_N: Formy 38.0 76 0.0016 27.0 5.3 103 15-149 1-110 (181)
259 PRK09739 hypothetical protein; 38.0 81 0.0018 27.3 5.6 39 12-50 1-42 (199)
260 TIGR00421 ubiX_pad polyprenyl 37.7 37 0.00081 29.1 3.3 34 17-51 2-35 (181)
261 PF05762 VWA_CoxE: VWA domain 37.6 67 0.0015 28.5 5.1 39 13-51 149-188 (222)
262 PRK03372 ppnK inorganic polyph 37.5 71 0.0015 30.0 5.3 56 321-394 69-128 (306)
263 PLN02572 UDP-sulfoquinovose sy 37.4 66 0.0014 32.0 5.5 45 3-50 35-79 (442)
264 TIGR00379 cobB cobyrinic acid 36.7 1.2E+02 0.0025 30.3 7.1 107 17-151 2-121 (449)
265 TIGR00639 PurN phosphoribosylg 36.6 2.8E+02 0.006 23.9 8.6 52 15-69 1-57 (190)
266 PF06506 PrpR_N: Propionate ca 36.5 48 0.001 28.1 3.8 114 26-152 17-155 (176)
267 PRK02649 ppnK inorganic polyph 36.5 42 0.00092 31.5 3.7 54 323-394 67-124 (305)
268 PRK06180 short chain dehydroge 36.3 61 0.0013 29.6 4.8 33 15-50 4-36 (277)
269 TIGR00640 acid_CoA_mut_C methy 36.0 76 0.0016 25.6 4.6 39 13-51 1-39 (132)
270 cd06559 Endonuclease_V Endonuc 35.7 42 0.0009 29.5 3.3 32 118-149 92-130 (208)
271 cd02032 Bchl_like This family 35.6 62 0.0013 29.5 4.7 39 15-53 1-39 (267)
272 COG1435 Tdk Thymidine kinase [ 35.3 3E+02 0.0066 23.9 11.1 38 15-52 4-42 (201)
273 PF05728 UPF0227: Uncharacteri 34.9 1.1E+02 0.0024 26.3 5.8 31 121-151 61-92 (187)
274 PRK12342 hypothetical protein; 34.9 71 0.0015 29.1 4.7 30 119-148 109-144 (254)
275 PRK06522 2-dehydropantoate 2-r 34.8 47 0.001 30.9 3.8 31 15-50 1-31 (304)
276 PRK01966 ddl D-alanyl-alanine 34.8 69 0.0015 30.4 5.0 40 12-51 1-44 (333)
277 TIGR01501 MthylAspMutase methy 34.7 78 0.0017 25.6 4.5 38 14-51 1-38 (134)
278 TIGR01281 DPOR_bchL light-inde 34.5 67 0.0015 29.2 4.7 39 15-53 1-39 (268)
279 COG4566 TtrR Response regulato 34.5 2.3E+02 0.005 24.5 7.3 64 344-412 74-137 (202)
280 TIGR00355 purH phosphoribosyla 34.2 63 0.0014 32.4 4.6 87 29-127 11-99 (511)
281 PRK06321 replicative DNA helic 34.1 2.7E+02 0.0058 28.0 9.1 36 16-51 228-264 (472)
282 PRK01231 ppnK inorganic polyph 34.0 81 0.0018 29.4 5.1 54 323-394 61-118 (295)
283 KOG0081 GTPase Rab27, small G 34.0 1.2E+02 0.0025 25.3 5.3 47 101-150 109-165 (219)
284 TIGR00521 coaBC_dfp phosphopan 33.9 52 0.0011 32.1 4.0 39 13-52 2-40 (390)
285 PRK00784 cobyric acid synthase 33.7 4.3E+02 0.0094 26.7 10.7 34 17-50 5-39 (488)
286 TIGR02329 propionate_PrpR prop 33.2 2.2E+02 0.0047 29.1 8.4 41 99-149 132-172 (526)
287 TIGR02113 coaC_strep phosphopa 33.2 58 0.0013 27.8 3.7 35 16-51 2-36 (177)
288 PLN02240 UDP-glucose 4-epimera 33.0 71 0.0015 30.3 4.8 35 12-50 3-37 (352)
289 CHL00072 chlL photochlorophyll 32.9 96 0.0021 28.8 5.5 39 15-53 1-39 (290)
290 PRK02122 glucosamine-6-phospha 32.9 79 0.0017 33.2 5.3 46 7-52 362-407 (652)
291 PF06506 PrpR_N: Propionate ca 32.8 44 0.00095 28.4 3.0 37 323-362 33-69 (176)
292 PRK05579 bifunctional phosphop 32.8 62 0.0013 31.7 4.3 40 12-52 4-43 (399)
293 TIGR02699 archaeo_AfpA archaeo 32.6 62 0.0013 27.5 3.8 27 25-51 9-37 (174)
294 PRK14568 vanB D-alanine--D-lac 32.6 75 0.0016 30.3 4.8 40 12-51 1-44 (343)
295 PRK06179 short chain dehydroge 32.5 76 0.0016 28.7 4.8 34 15-51 4-37 (270)
296 COG0541 Ffh Signal recognition 32.4 3.2E+02 0.007 27.0 8.8 42 13-54 99-140 (451)
297 PRK03378 ppnK inorganic polyph 32.4 96 0.0021 28.9 5.3 57 320-394 59-119 (292)
298 PF13460 NAD_binding_10: NADH( 32.3 53 0.0011 27.6 3.4 44 22-69 4-47 (183)
299 CHL00194 ycf39 Ycf39; Provisio 32.2 73 0.0016 29.8 4.7 32 15-50 1-32 (317)
300 COG4088 Predicted nucleotide k 32.0 64 0.0014 28.4 3.7 36 15-50 2-37 (261)
301 PRK11064 wecC UDP-N-acetyl-D-m 32.0 64 0.0014 31.8 4.4 35 12-51 1-35 (415)
302 TIGR01012 Sa_S2_E_A ribosomal 32.0 34 0.00073 29.7 2.1 35 119-153 108-144 (196)
303 TIGR00460 fmt methionyl-tRNA f 31.6 70 0.0015 30.1 4.4 33 15-52 1-33 (313)
304 PF07355 GRDB: Glycine/sarcosi 31.6 85 0.0018 29.8 4.8 74 280-368 229-302 (349)
305 PRK04885 ppnK inorganic polyph 31.3 37 0.0008 31.1 2.4 53 324-394 35-93 (265)
306 PF13450 NAD_binding_8: NAD(P) 31.3 61 0.0013 22.5 3.0 20 32-51 9-28 (68)
307 PLN02695 GDP-D-mannose-3',5'-e 31.2 83 0.0018 30.4 5.0 34 13-50 20-53 (370)
308 TIGR02482 PFKA_ATP 6-phosphofr 31.0 46 0.00099 31.1 3.0 38 320-357 85-126 (301)
309 PRK00881 purH bifunctional pho 30.9 1E+02 0.0022 31.1 5.4 56 15-76 4-60 (513)
310 PRK05993 short chain dehydroge 30.8 76 0.0017 29.0 4.5 34 14-50 3-36 (277)
311 PLN02253 xanthoxin dehydrogena 30.8 99 0.0021 28.2 5.2 32 16-50 19-50 (280)
312 cd02034 CooC The accessory pro 30.6 1.2E+02 0.0026 23.6 4.9 37 16-52 1-37 (116)
313 PRK05246 glutathione synthetas 30.5 66 0.0014 30.3 4.0 37 15-51 2-41 (316)
314 PRK08760 replicative DNA helic 30.4 2.6E+02 0.0055 28.2 8.3 36 16-51 231-267 (476)
315 PRK13234 nifH nitrogenase redu 30.2 1.2E+02 0.0026 28.2 5.7 42 12-53 1-43 (295)
316 PLN02712 arogenate dehydrogena 30.2 60 0.0013 34.2 4.0 44 2-50 357-400 (667)
317 PRK04020 rps2P 30S ribosomal p 30.1 39 0.00084 29.5 2.2 35 119-153 114-150 (204)
318 PRK12921 2-dehydropantoate 2-r 29.9 61 0.0013 30.1 3.7 31 15-50 1-31 (305)
319 PRK04761 ppnK inorganic polyph 29.8 43 0.00092 30.3 2.4 28 325-354 26-57 (246)
320 COG2120 Uncharacterized protei 29.8 1.1E+02 0.0023 27.5 5.1 41 11-51 7-47 (237)
321 cd00764 Eukaryotic_PFK Phospho 29.6 1.6E+02 0.0035 31.5 6.9 128 1-146 376-514 (762)
322 COG0162 TyrS Tyrosyl-tRNA synt 29.5 77 0.0017 31.0 4.3 37 14-51 34-73 (401)
323 COG0569 TrkA K+ transport syst 29.3 68 0.0015 28.5 3.7 33 15-52 1-33 (225)
324 PF12695 Abhydrolase_5: Alpha/ 29.3 1.3E+02 0.0029 23.6 5.3 33 18-50 2-34 (145)
325 cd01075 NAD_bind_Leu_Phe_Val_D 29.3 86 0.0019 27.3 4.3 35 10-49 24-58 (200)
326 PRK02155 ppnK NAD(+)/NADH kina 29.2 51 0.0011 30.7 2.9 56 321-394 60-119 (291)
327 COG3195 Uncharacterized protei 29.1 2.7E+02 0.0058 23.4 6.6 53 358-411 110-163 (176)
328 PRK14619 NAD(P)H-dependent gly 29.1 68 0.0015 30.0 3.9 34 13-51 3-36 (308)
329 PRK05784 phosphoribosylamine-- 28.9 3.6E+02 0.0078 27.3 9.1 31 15-50 1-33 (486)
330 PRK10353 3-methyl-adenine DNA 28.9 1.9E+02 0.0041 25.0 6.0 59 351-412 22-97 (187)
331 PF09001 DUF1890: Domain of un 28.8 47 0.001 26.8 2.2 23 29-51 14-36 (139)
332 PF01497 Peripla_BP_2: Peripla 28.8 89 0.0019 27.5 4.5 40 105-151 53-94 (238)
333 COG2109 BtuR ATP:corrinoid ade 28.8 3.9E+02 0.0084 23.2 9.6 96 17-130 31-133 (198)
334 PRK03359 putative electron tra 28.7 1.1E+02 0.0024 27.9 4.9 31 119-149 112-148 (256)
335 COG1698 Uncharacterized protei 28.6 2.1E+02 0.0046 21.2 5.3 37 384-423 18-55 (93)
336 PLN00016 RNA-binding protein; 28.5 72 0.0016 30.8 4.1 35 15-51 53-89 (378)
337 cd03114 ArgK-like The function 28.5 3.3E+02 0.0071 22.2 8.2 36 17-52 2-37 (148)
338 TIGR03837 efp_adjacent_2 conse 28.2 75 0.0016 30.5 3.8 31 21-51 7-38 (371)
339 COG1327 Predicted transcriptio 28.2 52 0.0011 27.0 2.4 99 334-434 35-146 (156)
340 PRK00652 lpxK tetraacyldisacch 28.1 97 0.0021 29.4 4.6 37 16-52 51-89 (325)
341 PRK06719 precorrin-2 dehydroge 28.0 84 0.0018 26.1 3.8 35 11-50 10-44 (157)
342 PF01372 Melittin: Melittin; 28.0 4.8 0.0001 21.5 -2.2 17 335-351 1-17 (26)
343 PRK09219 xanthine phosphoribos 28.0 1.3E+02 0.0027 26.0 5.0 31 118-148 49-81 (189)
344 cd00861 ProRS_anticodon_short 27.8 1.1E+02 0.0024 22.3 4.2 36 15-50 2-39 (94)
345 TIGR02398 gluc_glyc_Psyn gluco 27.8 4.6E+02 0.01 26.5 9.5 106 311-433 365-481 (487)
346 COG0503 Apt Adenine/guanine ph 27.7 1.3E+02 0.0027 25.7 4.9 29 118-146 52-82 (179)
347 PRK12311 rpsB 30S ribosomal pr 27.6 50 0.0011 31.2 2.6 37 118-154 151-189 (326)
348 PRK06276 acetolactate synthase 27.6 82 0.0018 32.7 4.4 27 325-353 64-96 (586)
349 TIGR02700 flavo_MJ0208 archaeo 27.6 88 0.0019 28.0 4.1 26 26-51 10-38 (234)
350 PRK09165 replicative DNA helic 27.5 2.3E+02 0.0049 28.8 7.4 35 17-51 220-269 (497)
351 COG2230 Cfa Cyclopropane fatty 27.0 20 0.00044 33.0 -0.1 39 333-372 80-121 (283)
352 PF00391 PEP-utilizers: PEP-ut 26.9 71 0.0015 23.0 2.8 30 118-147 29-60 (80)
353 TIGR00853 pts-lac PTS system, 26.8 1.7E+02 0.0038 21.9 5.0 39 12-50 1-39 (95)
354 PRK12829 short chain dehydroge 26.7 1.3E+02 0.0028 27.0 5.2 35 12-50 9-43 (264)
355 cd07037 TPP_PYR_MenD Pyrimidin 26.7 51 0.0011 27.6 2.3 29 324-354 60-94 (162)
356 cd02065 B12-binding_like B12 b 26.7 1.1E+02 0.0024 23.8 4.2 34 17-50 2-35 (125)
357 PRK07454 short chain dehydroge 26.7 1.3E+02 0.0028 26.5 5.2 34 14-50 5-38 (241)
358 PF10093 DUF2331: Uncharacteri 26.6 76 0.0016 30.6 3.6 31 21-51 7-38 (374)
359 PLN03209 translocon at the inn 26.5 1.1E+02 0.0025 31.4 5.1 39 9-50 74-112 (576)
360 PF00070 Pyr_redox: Pyridine n 26.4 90 0.002 22.2 3.3 22 30-51 10-31 (80)
361 cd00763 Bacterial_PFK Phosphof 26.4 62 0.0014 30.5 3.0 38 320-357 86-126 (317)
362 COG2085 Predicted dinucleotide 26.2 1.1E+02 0.0024 26.8 4.3 33 15-52 2-34 (211)
363 cd01980 Chlide_reductase_Y Chl 26.1 1.1E+02 0.0023 30.2 4.8 27 118-147 349-375 (416)
364 PRK13886 conjugal transfer pro 26.0 1.5E+02 0.0033 26.7 5.3 42 12-53 1-42 (241)
365 PLN02657 3,8-divinyl protochlo 26.0 1.3E+02 0.0028 29.3 5.3 34 13-50 59-92 (390)
366 COG3349 Uncharacterized conser 26.0 71 0.0015 31.9 3.4 32 15-51 1-32 (485)
367 PRK08229 2-dehydropantoate 2-r 25.9 79 0.0017 30.0 3.7 31 15-50 3-33 (341)
368 PRK05636 replicative DNA helic 25.8 1.8E+02 0.0039 29.5 6.4 35 17-51 268-303 (505)
369 PHA02857 monoglyceride lipase; 25.7 1.3E+02 0.0029 27.1 5.1 38 13-50 23-60 (276)
370 TIGR01005 eps_transp_fam exopo 25.7 6.9E+02 0.015 26.8 11.2 39 15-53 546-586 (754)
371 TIGR02483 PFK_mixed phosphofru 25.6 66 0.0014 30.5 3.1 38 320-357 88-128 (324)
372 PF02780 Transketolase_C: Tran 25.4 1.2E+02 0.0026 23.8 4.2 36 13-50 8-43 (124)
373 PRK03094 hypothetical protein; 25.4 65 0.0014 23.3 2.2 20 31-50 10-29 (80)
374 PRK14077 pnk inorganic polypho 25.4 61 0.0013 30.1 2.7 57 320-394 60-120 (287)
375 COG2210 Peroxiredoxin family p 25.4 1.5E+02 0.0032 24.0 4.5 32 19-50 8-39 (137)
376 COG2945 Predicted hydrolase of 25.3 1.1E+02 0.0024 26.5 3.9 46 2-47 17-65 (210)
377 PRK13011 formyltetrahydrofolat 25.1 2.4E+02 0.0053 26.1 6.6 116 267-409 155-272 (286)
378 PLN02924 thymidylate kinase 25.1 1.8E+02 0.0038 25.8 5.5 47 1-50 6-52 (220)
379 COG0299 PurN Folate-dependent 25.1 1.8E+02 0.0038 25.3 5.1 114 269-409 71-186 (200)
380 TIGR01915 npdG NADPH-dependent 25.1 79 0.0017 27.9 3.3 31 15-50 1-32 (219)
381 COG1492 CobQ Cobyric acid synt 25.0 3.2E+02 0.0069 27.4 7.6 55 85-147 99-164 (486)
382 PF04244 DPRP: Deoxyribodipyri 25.0 71 0.0015 28.4 2.9 24 27-50 47-70 (224)
383 PF06722 DUF1205: Protein of u 24.9 51 0.0011 24.9 1.8 21 269-289 30-50 (97)
384 TIGR00173 menD 2-succinyl-5-en 24.9 1.2E+02 0.0027 30.0 5.0 28 324-353 63-96 (432)
385 PRK13010 purU formyltetrahydro 24.7 2.5E+02 0.0053 26.2 6.6 117 266-409 158-276 (289)
386 COG2084 MmsB 3-hydroxyisobutyr 24.7 1E+02 0.0022 28.6 4.0 33 15-52 1-33 (286)
387 TIGR01675 plant-AP plant acid 24.6 84 0.0018 28.1 3.3 25 28-52 122-146 (229)
388 PF00862 Sucrose_synth: Sucros 24.6 91 0.002 31.3 3.8 33 118-150 400-434 (550)
389 KOG0541 Alkyl hydroperoxide re 24.5 73 0.0016 26.4 2.6 38 14-51 43-87 (171)
390 PRK06027 purU formyltetrahydro 24.4 1E+02 0.0023 28.6 4.1 116 267-409 155-272 (286)
391 TIGR01918 various_sel_PB selen 24.4 1.3E+02 0.0029 29.4 4.8 53 320-374 330-392 (431)
392 TIGR01917 gly_red_sel_B glycin 24.4 1.3E+02 0.0028 29.4 4.7 37 321-357 331-375 (431)
393 PRK06456 acetolactate synthase 24.4 82 0.0018 32.5 3.8 24 330-353 72-101 (572)
394 PF03720 UDPG_MGDP_dh_C: UDP-g 24.2 93 0.002 23.8 3.2 22 29-50 17-38 (106)
395 cd01965 Nitrogenase_MoFe_beta_ 24.0 1.3E+02 0.0029 29.7 5.0 26 118-146 370-395 (428)
396 PRK14071 6-phosphofructokinase 24.0 68 0.0015 30.9 2.8 38 320-357 101-142 (360)
397 PRK14494 putative molybdopteri 24.0 1.3E+02 0.0029 26.8 4.5 36 15-50 1-37 (229)
398 PF01695 IstB_IS21: IstB-like 24.0 1.5E+02 0.0032 25.2 4.7 37 14-50 47-83 (178)
399 PF03721 UDPG_MGDP_dh_N: UDP-g 24.0 1.2E+02 0.0027 25.9 4.2 32 15-51 1-32 (185)
400 PRK02231 ppnK inorganic polyph 23.9 72 0.0016 29.4 2.9 58 318-393 36-97 (272)
401 PF07429 Glyco_transf_56: 4-al 23.9 2.5E+02 0.0055 26.8 6.4 81 308-393 245-332 (360)
402 PF03403 PAF-AH_p_II: Platelet 23.8 77 0.0017 30.8 3.2 39 13-51 98-136 (379)
403 TIGR03026 NDP-sugDHase nucleot 23.8 1.1E+02 0.0023 30.1 4.3 32 15-51 1-32 (411)
404 TIGR00655 PurU formyltetrahydr 23.7 2.8E+02 0.0061 25.7 6.7 117 266-409 149-267 (280)
405 cd01147 HemV-2 Metal binding p 23.6 1.2E+02 0.0025 27.3 4.3 38 105-149 67-107 (262)
406 PRK08322 acetolactate synthase 23.5 1.3E+02 0.0028 30.8 5.0 26 328-353 65-96 (547)
407 TIGR01963 PHB_DH 3-hydroxybuty 23.4 1.3E+02 0.0028 26.7 4.6 32 17-51 3-34 (255)
408 PRK10427 putative PTS system f 23.4 1.7E+02 0.0037 22.9 4.5 38 15-52 3-43 (114)
409 PRK06197 short chain dehydroge 23.2 2.1E+02 0.0045 26.5 6.0 34 14-50 15-48 (306)
410 PRK08309 short chain dehydroge 23.2 1.5E+02 0.0032 25.3 4.5 19 32-50 13-31 (177)
411 PRK08265 short chain dehydroge 23.1 1.5E+02 0.0032 26.7 4.9 32 16-50 7-38 (261)
412 PRK05579 bifunctional phosphop 23.0 1.8E+02 0.0038 28.6 5.5 39 11-51 185-237 (399)
413 PLN03064 alpha,alpha-trehalose 23.0 4.8E+02 0.01 28.9 9.1 87 314-412 446-544 (934)
414 PRK06112 acetolactate synthase 23.0 83 0.0018 32.5 3.5 28 324-353 74-107 (578)
415 PF03446 NAD_binding_2: NAD bi 22.8 94 0.002 25.9 3.2 31 15-50 2-32 (163)
416 PRK12825 fabG 3-ketoacyl-(acyl 22.6 1.6E+02 0.0035 25.8 5.0 35 12-50 4-38 (249)
417 PLN02891 IMP cyclohydrolase 22.5 1.2E+02 0.0027 30.6 4.3 90 27-127 31-122 (547)
418 PF03698 UPF0180: Uncharacteri 22.5 77 0.0017 23.0 2.2 21 31-51 10-30 (80)
419 PRK02645 ppnK inorganic polyph 22.5 68 0.0015 30.1 2.5 29 324-354 57-89 (305)
420 KOG1387 Glycosyltransferase [C 22.5 7E+02 0.015 24.0 22.2 100 306-413 335-445 (465)
421 PRK08674 bifunctional phosphog 22.5 5.5E+02 0.012 24.3 8.7 56 16-73 80-135 (337)
422 PLN00141 Tic62-NAD(P)-related 22.2 2.1E+02 0.0046 25.5 5.7 33 14-50 17-49 (251)
423 PRK10566 esterase; Provisional 22.1 1.9E+02 0.004 25.7 5.3 35 16-50 28-62 (249)
424 PF12765 Cohesin_HEAT: HEAT re 22.0 2E+02 0.0043 17.7 3.8 29 378-407 13-41 (42)
425 TIGR03018 pepcterm_TyrKin exop 22.0 2E+02 0.0044 24.9 5.4 41 13-53 33-76 (207)
426 COG3914 Spy Predicted O-linked 22.0 2.3E+02 0.0051 29.0 6.0 64 308-376 489-561 (620)
427 PRK03708 ppnK inorganic polyph 21.9 63 0.0014 29.8 2.1 29 324-354 57-88 (277)
428 PRK07773 replicative DNA helic 21.8 4E+02 0.0086 29.4 8.5 35 17-51 220-255 (886)
429 PF14626 RNase_Zc3h12a_2: Zc3h 21.8 1.2E+02 0.0025 23.9 3.2 25 28-52 9-33 (122)
430 COG0300 DltE Short-chain dehyd 21.8 85 0.0018 28.7 2.9 36 13-51 4-39 (265)
431 PRK01906 tetraacyldisaccharide 21.8 1.1E+02 0.0023 29.3 3.6 37 16-52 60-96 (338)
432 PF08766 DEK_C: DEK C terminal 21.7 2.4E+02 0.0053 18.4 5.1 33 380-412 1-35 (54)
433 cd01974 Nitrogenase_MoFe_beta 21.7 1.6E+02 0.0036 29.1 5.2 27 118-147 376-402 (435)
434 cd05014 SIS_Kpsf KpsF-like pro 21.6 2.7E+02 0.0059 21.6 5.6 49 15-65 48-96 (128)
435 PRK07688 thiamine/molybdopteri 21.6 2.5E+02 0.0054 26.8 6.1 34 13-51 23-57 (339)
436 PF07015 VirC1: VirC1 protein; 21.6 2.4E+02 0.0052 25.2 5.5 34 23-56 11-44 (231)
437 COG2327 WcaK Polysaccharide py 21.5 4.1E+02 0.0089 25.8 7.5 74 320-403 281-357 (385)
438 PF01380 SIS: SIS domain SIS d 21.5 1.8E+02 0.0039 22.6 4.6 30 24-53 62-91 (131)
439 PRK07308 flavodoxin; Validated 21.5 1.8E+02 0.0039 23.6 4.6 37 12-50 1-38 (146)
440 PTZ00318 NADH dehydrogenase-li 21.4 1.2E+02 0.0026 29.9 4.2 37 10-51 6-42 (424)
441 PHA02519 plasmid partition pro 21.3 2E+02 0.0043 28.1 5.5 43 11-53 102-147 (387)
442 PRK04148 hypothetical protein; 21.3 94 0.002 25.1 2.7 33 14-52 17-49 (134)
443 PF06418 CTP_synth_N: CTP synt 21.3 1.2E+02 0.0027 27.6 3.7 38 15-52 1-41 (276)
444 cd01976 Nitrogenase_MoFe_alpha 21.2 1.3E+02 0.0028 29.7 4.3 27 118-147 368-394 (421)
445 PRK08213 gluconate 5-dehydroge 21.2 1.8E+02 0.0039 26.0 5.1 44 1-50 1-44 (259)
446 PRK15181 Vi polysaccharide bio 21.2 1.7E+02 0.0037 27.8 5.1 37 10-50 11-47 (348)
447 PRK05299 rpsB 30S ribosomal pr 21.1 74 0.0016 29.0 2.3 36 118-153 156-193 (258)
448 PRK13982 bifunctional SbtC-lik 21.1 1.3E+02 0.0029 30.1 4.3 39 13-52 69-107 (475)
449 PRK07710 acetolactate synthase 21.1 1.1E+02 0.0023 31.7 3.8 28 324-353 78-111 (571)
450 COG0451 WcaG Nucleoside-diphos 21.0 2E+02 0.0044 26.4 5.5 27 23-51 7-33 (314)
451 COG4081 Uncharacterized protei 20.9 2.2E+02 0.0048 22.7 4.5 26 26-51 16-41 (148)
452 PF08542 Rep_fac_C: Replicatio 20.8 3.3E+02 0.0072 19.6 5.9 48 379-434 3-50 (89)
453 PRK05693 short chain dehydroge 20.8 1.5E+02 0.0033 26.8 4.5 33 15-50 1-33 (274)
454 PF02635 DrsE: DsrE/DsrF-like 20.8 2.6E+02 0.0055 21.3 5.3 37 15-51 1-43 (122)
455 COG3640 CooC CO dehydrogenase 20.8 2.7E+02 0.0059 25.1 5.6 40 15-54 1-41 (255)
456 PRK03202 6-phosphofructokinase 20.7 81 0.0018 29.8 2.6 38 320-357 87-127 (320)
457 TIGR01689 EcbF-BcbF capsule bi 20.7 1.2E+02 0.0026 24.2 3.2 23 30-52 28-50 (126)
458 smart00046 DAGKc Diacylglycero 20.6 84 0.0018 24.8 2.3 28 329-356 52-88 (124)
459 PF04493 Endonuclease_5: Endon 20.6 1.2E+02 0.0026 26.6 3.5 32 118-149 88-126 (206)
460 PRK05858 hypothetical protein; 20.5 1.7E+02 0.0038 29.9 5.2 28 324-353 67-100 (542)
461 TIGR00682 lpxK tetraacyldisacc 20.5 1.4E+02 0.003 28.1 4.1 36 17-52 33-68 (311)
462 PRK06194 hypothetical protein; 20.3 1.7E+02 0.0037 26.7 4.7 32 16-50 7-38 (287)
463 TIGR01011 rpsB_bact ribosomal 20.3 81 0.0017 28.1 2.4 36 118-153 154-191 (225)
464 PHA02542 41 41 helicase; Provi 20.2 1.3E+02 0.0029 30.2 4.1 45 99-147 285-351 (473)
465 TIGR03172 probable selenium-de 20.2 1.3E+02 0.0029 26.9 3.7 33 22-54 5-37 (232)
466 PF02572 CobA_CobO_BtuR: ATP:c 20.1 5.4E+02 0.012 21.8 7.7 97 16-130 5-107 (172)
467 TIGR01278 DPOR_BchB light-inde 20.1 1.8E+02 0.0039 29.6 5.1 28 118-148 363-390 (511)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=7.3e-65 Score=494.39 Aligned_cols=411 Identities=41% Similarity=0.745 Sum_probs=319.1
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC-CCCCceEEEccCCCCCCCCCCCCCCCCHHHHHH
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSC-NYPHFEFCSFSDDGFSETYQPSKVADDIPALLL 91 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (435)
++.||+++|++++||++|++.||+.|+.+|+.|||++++.+..... ...++++..+| +++|++ .........++.
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~~~~~i~~~~ip-~glp~~---~~~~~~~~~~~~ 81 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSDDFTDFQFVTIP-ESLPES---DFKNLGPIEFLH 81 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccccCCCCeEEEeCC-CCCCcc---cccccCHHHHHH
Confidence 5689999999999999999999999999999999999987653221 12469999999 888764 111122334555
Q ss_pred HHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHHHHHHhhhhhhhhcCC-CC
Q 013836 92 SLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAASLSYAAFPILREKGY-LP 170 (435)
Q Consensus 92 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~-~~ 170 (435)
.+...+...+++.++++..+.. .+++|||+|.+..|+..+|+++|||++.+++++++..+.+.+++....... .+
T Consensus 82 ~~~~~~~~~~~~~L~~l~~~~~----~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~ 157 (451)
T PLN02410 82 KLNKECQVSFKDCLGQLVLQQG----NEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAP 157 (451)
T ss_pred HHHHHhHHHHHHHHHHHHhccC----CCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCC
Confidence 5656667777777777653222 467999999999999999999999999999999998877665433222111 12
Q ss_pred CCC--CCCcccccCCCCCCcCCCCccccCCCchHHHHHHHHhhhcccccEEEecchhhhchHHHHHhhhhccCCCCeeee
Q 013836 171 IQD--FQLEAPVIEFPPLRVKDIPLLKTQDSNNADKVLSLRDSQIMASSGIIWNSFEDLEQVELTAVHQQYYLSIPVFPI 248 (435)
Q Consensus 171 ~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~~~pv~~v 248 (435)
... ......+|+++.++.++++.............+... .....++++++|||++||+.+++.++.. +++|++.|
T Consensus 158 ~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~--~~~~v~~v 234 (451)
T PLN02410 158 LKEPKGQQNELVPEFHPLRCKDFPVSHWASLESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQQQ--LQIPVYPI 234 (451)
T ss_pred ccccccCccccCCCCCCCChHHCcchhcCCcHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHHhc--cCCCEEEe
Confidence 111 111124788877777777643211222222222222 2356789999999999999999999886 55679999
Q ss_pred CCCccCCCCCCCCCCcccchhhhhhhcCCCCcEEEEEec--------------------------cccCc-----cccCC
Q 013836 249 GPFHKCFPASSSSLLSQDQSSISWLDKQAPRSVIYVSFG--------------------------LARGA-----EWLEP 297 (435)
Q Consensus 249 Gp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~G--------------------------~v~~~-----~~~~~ 297 (435)
||++..... ..+....+.++.+|||++++++||||||| +++.. ++...
T Consensus 235 Gpl~~~~~~-~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~ 313 (451)
T PLN02410 235 GPLHLVASA-PTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIES 313 (451)
T ss_pred cccccccCC-CccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhc
Confidence 999864321 01112233468999999999999999999 22211 11123
Q ss_pred CchhhHhhhcCCceEEeecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCC
Q 013836 298 LPKGILEMVDGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEG 377 (435)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~ 377 (435)
+|++|.+++++|+++++|+||.+||+|+++++|||||||||+.||+++|||||++|++.||+.||+++++.+|+|+.+..
T Consensus 314 lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~ 393 (451)
T PLN02410 314 LPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEG 393 (451)
T ss_pred CChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999875699999976
Q ss_pred cCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 013836 378 KLERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIMSL 435 (435)
Q Consensus 378 ~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 435 (435)
.++.++|+++|+++|.++++++||++|+++++++++|+++||++++.+++|++.+..|
T Consensus 394 ~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~~ 451 (451)
T PLN02410 394 DLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRTL 451 (451)
T ss_pred cccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Confidence 7999999999999998866789999999999999999999999999999999999865
No 2
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.1e-62 Score=473.75 Aligned_cols=399 Identities=29% Similarity=0.476 Sum_probs=311.4
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCC--CCCCCceEEEccCCCCCCCCCCCCCCCCHHHHH
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNS--CNYPHFEFCSFSDDGFSETYQPSKVADDIPALL 90 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (435)
++.||+++|+|++||++|++.||+.|+.+|+.|||++|+.+.... ...+++++..++ +++|++. .....+...++
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ip-dglp~~~--~~~~~~~~~~~ 80 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATIS-DGYDQGG--FSSAGSVPEYL 80 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEcC-CCCCCcc--cccccCHHHHH
Confidence 457999999999999999999999999999999999998664332 122469999999 8888731 12223455666
Q ss_pred HHHHHhcchHHHHHHHHHHhccCCcCCCCc-cEEEEcCchhhHHHHHHHcCCCeEEEcccchHHHHHHhhhhhhhhcCCC
Q 013836 91 LSLNAKCIVPFRDCLANKLMSNAQESKDSF-ACLITDAAWFIALSVANDFKLPTIVLLTDSIAASLSYAAFPILREKGYL 169 (435)
Q Consensus 91 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (435)
..+...+.+.++++++.+... .+| +|||+|.+..|+..+|+++|||++.+++++++....+++ +.. ..
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~------~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~-~~--- 149 (449)
T PLN02173 81 QNFKTFGSKTVADIIRKHQST------DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYI-NN--- 149 (449)
T ss_pred HHHHHhhhHHHHHHHHHhhcc------CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHh-cc---
Confidence 666667777888887776432 234 999999999999999999999999999988887655442 111 00
Q ss_pred CCCCCCCcccccCCCCCCcCCCCccccC--CCchHHHHHHHHhhhcccccEEEecchhhhchHHHHHhhhhccCCCCeee
Q 013836 170 PIQDFQLEAPVIEFPPLRVKDIPLLKTQ--DSNNADKVLSLRDSQIMASSGIIWNSFEDLEQVELTAVHQQYYLSIPVFP 247 (435)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~~~pv~~ 247 (435)
......+|+++.++.++++..... ........+.+..+...+++.+++||+.+||+.+++.++.. .|++.
T Consensus 150 ----~~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~----~~v~~ 221 (449)
T PLN02173 150 ----GSLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV----CPVLT 221 (449)
T ss_pred ----CCccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc----CCeeE
Confidence 011223678888888888754322 12223343444455677899999999999999999998774 57999
Q ss_pred eCCCccCC-------CCCC--CCCC--cccchhhhhhhcCCCCcEEEEEeccccCc-----------------------c
Q 013836 248 IGPFHKCF-------PASS--SSLL--SQDQSSISWLDKQAPRSVIYVSFGLARGA-----------------------E 293 (435)
Q Consensus 248 vGp~~~~~-------~~~~--~~~~--~~~~~l~~~l~~~~~~~vV~vs~G~v~~~-----------------------~ 293 (435)
|||+++.. .... .+.+ +.+.++.+||+++++++|||||||++... +
T Consensus 222 VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gLs~~~flWvvr~~ 301 (449)
T PLN02173 222 IGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAISNFSYLWVVRAS 301 (449)
T ss_pred EcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHhcCCCEEEEEecc
Confidence 99997421 0000 0111 23345999999999899999999922110 0
Q ss_pred ccCCCchhhHhhh-cCCceEEeecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccE
Q 013836 294 WLEPLPKGILEMV-DGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVG 372 (435)
Q Consensus 294 ~~~~l~~~~~~~~-~~~~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g 372 (435)
..+.+|+++.++. ++|+++++|+||.+||+|++|++|||||||||++||+++|||||++|++.||+.||+++++.+|+|
T Consensus 302 ~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~G 381 (449)
T PLN02173 302 EESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVG 381 (449)
T ss_pred chhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCce
Confidence 0124777887777 588999999999999999999999999999999999999999999999999999999999856888
Q ss_pred EEeCC-----cCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 013836 373 LQLEG-----KLERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIM 433 (435)
Q Consensus 373 ~~~~~-----~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 433 (435)
+.+.. .++.++|.++|+++|.+++|+++|++|++++++.++|+++||++.+.+++|++.+.
T Consensus 382 v~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 382 VRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred EEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 88753 26999999999999998778999999999999999999999999999999999875
No 3
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=4.3e-62 Score=476.58 Aligned_cols=404 Identities=27% Similarity=0.512 Sum_probs=314.8
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----------C---CCCceEEEccCCCCCCCCCCC
Q 013836 14 GRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSC----------N---YPHFEFCSFSDDGFSETYQPS 80 (435)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~----------~---~~~~~~~~~~~~~~~~~~~~~ 80 (435)
+.||+++|+|++||++|++.||+.|+.+|..|||++|+.+..... . ...++|..+| +++|++.+
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p-dglp~~~~-- 83 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE-DGWAEDDP-- 83 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC-CCCCCCcc--
Confidence 479999999999999999999999999999999999986543211 0 1125666677 77876522
Q ss_pred CCCCCHHHHHHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHHHHHHhhh
Q 013836 81 KVADDIPALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAASLSYAAF 160 (435)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~ 160 (435)
...+...++..+...+...+++.++++..+. .+++|||+|.+..|+..+|+++|||.+++++++++..+.++++
T Consensus 84 -~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~ 157 (480)
T PLN02555 84 -RRQDLDLYLPQLELVGKREIPNLVKRYAEQG-----RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHY 157 (480)
T ss_pred -cccCHHHHHHHHHHhhhHHHHHHHHHHhccC-----CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHH
Confidence 2234444555555566677777777664321 3459999999999999999999999999999999998887765
Q ss_pred hhhhhcCCCCCCC---CCCcccccCCCCCCcCCCCccccC--CCchHHHHHHHHhhhcccccEEEecchhhhchHHHHHh
Q 013836 161 PILREKGYLPIQD---FQLEAPVIEFPPLRVKDIPLLKTQ--DSNNADKVLSLRDSQIMASSGIIWNSFEDLEQVELTAV 235 (435)
Q Consensus 161 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~ 235 (435)
+. ...+... ......+|+++.++.++++..... ......+.+.+..+....++++++|||.+||+.+++.+
T Consensus 158 ~~----~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l 233 (480)
T PLN02555 158 YH----GLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYM 233 (480)
T ss_pred hh----cCCCcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHH
Confidence 32 1112111 112234789988888888854321 12233344444455667889999999999999999988
Q ss_pred hhhccCCCCeeeeCCCccCCCC--C--CCCCCcccchhhhhhhcCCCCcEEEEEec------------------------
Q 013836 236 HQQYYLSIPVFPIGPFHKCFPA--S--SSSLLSQDQSSISWLDKQAPRSVIYVSFG------------------------ 287 (435)
Q Consensus 236 ~~~~~~~~pv~~vGp~~~~~~~--~--~~~~~~~~~~l~~~l~~~~~~~vV~vs~G------------------------ 287 (435)
+.. .|++.|||++..... . ....+..+.++.+||+++++++|||||||
T Consensus 234 ~~~----~~v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~f 309 (480)
T PLN02555 234 SKL----CPIKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSF 309 (480)
T ss_pred hhC----CCEEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeE
Confidence 775 469999999754211 0 01113344569999999988899999999
Q ss_pred --cccCcc-----ccCCCchhhHhhhcCCceEEeecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhH
Q 013836 288 --LARGAE-----WLEPLPKGILEMVDGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMV 360 (435)
Q Consensus 288 --~v~~~~-----~~~~l~~~~~~~~~~~~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~ 360 (435)
+++... ....+|+++.+++++|+++++|+||.+||+|++|++|||||||||+.||+++|||||++|+++||+.
T Consensus 310 lW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~ 389 (480)
T PLN02555 310 LWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVT 389 (480)
T ss_pred EEEEecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHH
Confidence 112100 0124788888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccEEEeC-----C-cCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 013836 361 NSRYVSHAWRVGLQLE-----G-KLERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIMS 434 (435)
Q Consensus 361 na~~v~~~~G~g~~~~-----~-~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 434 (435)
||+++++.+|+|+.+. . .++.++|.++|+++|++++|.++|+||++|++..++|+++||+++..+++|++.|.+
T Consensus 390 Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~ 469 (480)
T PLN02555 390 DAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVR 469 (480)
T ss_pred HHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 9999988679999993 3 589999999999999887789999999999999999999999999999999999864
No 4
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=2.2e-61 Score=471.41 Aligned_cols=403 Identities=30% Similarity=0.474 Sum_probs=307.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----CCCCceEEEccCCCCCCCCCCCCCCCCHHHH
Q 013836 14 GRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSC----NYPHFEFCSFSDDGFSETYQPSKVADDIPAL 89 (435)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (435)
+.||+++|+|++||++|++.||+.|+.+|++||+++++.+..... ...+++++.+| ++++.+ . ..+...+
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp-~g~~~~---~--~~~~~~l 79 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSIS-DGQDDD---P--PRDFFSI 79 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECC-CCCCCC---c--cccHHHH
Confidence 469999999999999999999999999999999999976543211 12369999999 766533 1 1234444
Q ss_pred HHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHHHHHHhhhhhhhhcCCC
Q 013836 90 LLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAASLSYAAFPILREKGYL 169 (435)
Q Consensus 90 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (435)
+..+...+...++++++++... .+++|||+|.+..|+..+|+++|||++.++++++...+.+.+.+........
T Consensus 80 ~~a~~~~~~~~l~~ll~~l~~~------~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~ 153 (448)
T PLN02562 80 ENSMENTMPPQLERLLHKLDED------GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLI 153 (448)
T ss_pred HHHHHHhchHHHHHHHHHhcCC------CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccc
Confidence 4555446677777777766431 2469999999999999999999999999999998877776554432222211
Q ss_pred CCCC-C---CCcccccCCCCCCcCCCCccccCC--CchHHHHHHHHhhhcccccEEEecchhhhchHHHHHhhhhc--cC
Q 013836 170 PIQD-F---QLEAPVIEFPPLRVKDIPLLKTQD--SNNADKVLSLRDSQIMASSGIIWNSFEDLEQVELTAVHQQY--YL 241 (435)
Q Consensus 170 ~~~~-~---~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~--~~ 241 (435)
+..+ . .....+|+++.++.++++...... .......+.+..+...+++.+++|||.+||+.+++..+..+ ..
T Consensus 154 ~~~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~ 233 (448)
T PLN02562 154 SETGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQ 233 (448)
T ss_pred ccccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhcccc
Confidence 1111 0 111247888778888887543211 22334455555566777899999999999998888665310 01
Q ss_pred CCCeeeeCCCccCCCCC--CCCCCcccchhhhhhhcCCCCcEEEEEecccc-C-c-c-----------------c-----
Q 013836 242 SIPVFPIGPFHKCFPAS--SSSLLSQDQSSISWLDKQAPRSVIYVSFGLAR-G-A-E-----------------W----- 294 (435)
Q Consensus 242 ~~pv~~vGp~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~vV~vs~G~v~-~-~-~-----------------~----- 294 (435)
.++++.|||++...... ..+.++.+.++.+||+++++++|||||||++. . + + |
T Consensus 234 ~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~ 313 (448)
T PLN02562 234 NPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPV 313 (448)
T ss_pred CCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 23499999998654210 11224555568899999988899999999421 1 0 0 1
Q ss_pred -cCCCchhhHhhhcCCceEEeecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEE
Q 013836 295 -LEPLPKGILEMVDGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGL 373 (435)
Q Consensus 295 -~~~l~~~~~~~~~~~~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~ 373 (435)
.+.+|+++.+++++|+++++|+||.+||+|+++++|||||||||+.||+++|||||++|+++||+.||+++++.+|+|+
T Consensus 314 ~~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~ 393 (448)
T PLN02562 314 WREGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGV 393 (448)
T ss_pred chhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCcee
Confidence 1247778888888999999999999999999999999999999999999999999999999999999999987469999
Q ss_pred EeCCcCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 013836 374 QLEGKLERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIM 433 (435)
Q Consensus 374 ~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 433 (435)
.+.. ++.++|.++|+++|+| ++||+||+++++++.++ ++||||++.+++|++.++
T Consensus 394 ~~~~-~~~~~l~~~v~~~l~~---~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 394 RISG-FGQKEVEEGLRKVMED---SGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred EeCC-CCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 9875 8999999999999998 89999999999999887 668999999999999874
No 5
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=2.6e-60 Score=461.98 Aligned_cols=413 Identities=24% Similarity=0.402 Sum_probs=305.0
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEeCCCCCC-C----C----CCCCCceEEEccCCCCCCCCCCC
Q 013836 12 RNGRRVILFPLPFQGHINPMLQLGSILYSEG--FSITIIHTTLNSP-N----S----CNYPHFEFCSFSDDGFSETYQPS 80 (435)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~La~~L~~rG--H~Vt~~~~~~~~~-~----~----~~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
|++.|++++|+|++||++|++.||+.|+.+| ..||+++++.+.. . . ...++++|..+| +..... + .
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp-~~~~~~-~-~ 77 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVP-ELEEKP-T-L 77 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeC-CCCCCC-c-c
Confidence 7889999999999999999999999999998 9999999986541 0 0 112369999999 432111 0 0
Q ss_pred CCCCCHHHHHHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHHHHHHhhh
Q 013836 81 KVADDIPALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAASLSYAAF 160 (435)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~ 160 (435)
....+....+..+...+...+++.++++.+...... .+++|||+|.+..|+..+|+++|||++.++++++...+.+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~ 156 (468)
T PLN02207 78 GGTQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDG-VKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYL 156 (468)
T ss_pred ccccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCC-CCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHh
Confidence 112344444433444555555555555543210000 2349999999999999999999999999999999888877655
Q ss_pred hhhhhcC-CCCCCCCCCcccccCC-CCCCcCCCCccccCCCchHHHHHHHHhhhcccccEEEecchhhhchHHHHHhhh-
Q 013836 161 PILREKG-YLPIQDFQLEAPVIEF-PPLRVKDIPLLKTQDSNNADKVLSLRDSQIMASSGIIWNSFEDLEQVELTAVHQ- 237 (435)
Q Consensus 161 ~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~- 237 (435)
+...... ..+..+......+|++ +.++.++++..... ... ...+.+....+++++++++||+++||+++++.++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~-~~~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~ 234 (468)
T PLN02207 157 ADRHSKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFV-EDG-YDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDE 234 (468)
T ss_pred hhccccccccCcCCCCCeEECCCCCCCCChHHCcchhcC-Ccc-HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhc
Confidence 4321111 1111111112347887 57888888854321 122 33334444567889999999999999999888843
Q ss_pred -hccCCCCeeeeCCCccCCCCCCCC-CCcccchhhhhhhcCCCCcEEEEEec--------------------------cc
Q 013836 238 -QYYLSIPVFPIGPFHKCFPASSSS-LLSQDQSSISWLDKQAPRSVIYVSFG--------------------------LA 289 (435)
Q Consensus 238 -~~~~~~pv~~vGp~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~vV~vs~G--------------------------~v 289 (435)
. .++++.|||++......... ....+.++.+||+++++++||||||| .+
T Consensus 235 ~~---~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~ 311 (468)
T PLN02207 235 QN---YPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSL 311 (468)
T ss_pred cC---CCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEE
Confidence 3 13499999998643210000 11123569999999988999999999 12
Q ss_pred cCcc--ccCCCchhhHhhhcCCceEEeecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHHHHHHh
Q 013836 290 RGAE--WLEPLPKGILEMVDGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSH 367 (435)
Q Consensus 290 ~~~~--~~~~l~~~~~~~~~~~~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~ 367 (435)
+... ..+.+|++|.+++++|+++++|+||.+||+|+++++|||||||||+.||+++|||||++|+++||+.||+++++
T Consensus 312 r~~~~~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~ 391 (468)
T PLN02207 312 RTEEVTNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVK 391 (468)
T ss_pred eCCCccccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHH
Confidence 2111 12237788988899999999999999999999999999999999999999999999999999999999998766
Q ss_pred hhccEEEeC------C--cCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 013836 368 AWRVGLQLE------G--KLERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIMS 434 (435)
Q Consensus 368 ~~G~g~~~~------~--~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 434 (435)
.+|+|+.+. . .++.++|.++|+++|++ ++++||+||+++++.+++|+.+|||+++.+++|++.+..
T Consensus 392 ~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~ 465 (468)
T PLN02207 392 ELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIG 465 (468)
T ss_pred HhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 479999662 1 35999999999999973 248999999999999999999999999999999998863
No 6
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.5e-60 Score=464.42 Aligned_cols=402 Identities=26% Similarity=0.462 Sum_probs=302.7
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCCCCCCCC----CCCCCceEEEccC---CCCCCCCCCCCCCC
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILY-SEGFSITIIHTTLNSPNS----CNYPHFEFCSFSD---DGFSETYQPSKVAD 84 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~-~rGH~Vt~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 84 (435)
.+.||+++|+|++||++|++.||+.|+ ++|++|||++++.+.... ....++++..+|. +++++. . .
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~----~--~ 77 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDP----S--A 77 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCC----C--c
Confidence 357999999999999999999999998 789999999998764321 1223688988882 133311 1 1
Q ss_pred CHHHHHHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHHHHHHhhhhhhh
Q 013836 85 DIPALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAASLSYAAFPILR 164 (435)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 164 (435)
+....+......+...++++++++. .+|+|||+|.+..|+..+|+++|||++.|+++++...+.+.+.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~--------~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 149 (481)
T PLN02992 78 HVVTKIGVIMREAVPTLRSKIAEMH--------QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLD 149 (481)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHhcC--------CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhc
Confidence 2222222233344455555555431 46899999999999999999999999999999998877665543211
Q ss_pred hcCCCCCCCCCCcccccCCCCCCcCCCCccccCCCchHHHHHHHHhhhcccccEEEecchhhhchHHHHHhhhhccC---
Q 013836 165 EKGYLPIQDFQLEAPVIEFPPLRVKDIPLLKTQDSNNADKVLSLRDSQIMASSGIIWNSFEDLEQVELTAVHQQYYL--- 241 (435)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~--- 241 (435)
.....+.........+|+++.++..+++.............+.+......+++.+++||+.+||+.+++.++....+
T Consensus 150 ~~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~ 229 (481)
T PLN02992 150 KDIKEEHTVQRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRV 229 (481)
T ss_pred cccccccccCCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccc
Confidence 11000100111123478888788888774322233334445555556677899999999999999999988652111
Q ss_pred -CCCeeeeCCCccCCCCCCCCCCcccchhhhhhhcCCCCcEEEEEec--------------------------cccCc-c
Q 013836 242 -SIPVFPIGPFHKCFPASSSSLLSQDQSSISWLDKQAPRSVIYVSFG--------------------------LARGA-E 293 (435)
Q Consensus 242 -~~pv~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~G--------------------------~v~~~-~ 293 (435)
.+|++.|||++..... . ..+.++.+||+++++++||||||| .++.. +
T Consensus 230 ~~~~v~~VGPl~~~~~~---~--~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~ 304 (481)
T PLN02992 230 ARVPVYPIGPLCRPIQS---S--KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVD 304 (481)
T ss_pred cCCceEEecCccCCcCC---C--cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 2469999999754221 1 234569999999988999999999 23210 0
Q ss_pred ----------------c--cCCCchhhHhhhcCCceE-EeecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccC
Q 013836 294 ----------------W--LEPLPKGILEMVDGRGYI-VKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPY 354 (435)
Q Consensus 294 ----------------~--~~~l~~~~~~~~~~~~~~-~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~ 354 (435)
. ...+|++|.+++.++.++ .+|+||.+||+|+++++|||||||||+.||+++|||||++|+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~ 384 (481)
T PLN02992 305 GSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPL 384 (481)
T ss_pred cccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCc
Confidence 0 123788888888776655 499999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHH-hhhccEEEeCC---cCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHH
Q 013836 355 FGDQMVNSRYVS-HAWRVGLQLEG---KLERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQ--QGGSSYQSLGRL 428 (435)
Q Consensus 355 ~~DQ~~na~~v~-~~~G~g~~~~~---~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~--~~g~~~~~~~~~ 428 (435)
+.||+.||++++ + +|+|+.++. .++.++|.++|+++|.+++|++||++|+++++++++|+. +||+|.+.++.|
T Consensus 385 ~~DQ~~na~~~~~~-~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~ 463 (481)
T PLN02992 385 FAEQNMNAALLSDE-LGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRV 463 (481)
T ss_pred cchhHHHHHHHHHH-hCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 999999999995 6 799999965 489999999999999887788999999999999999994 599999999999
Q ss_pred HHHHHc
Q 013836 429 TDHIMS 434 (435)
Q Consensus 429 ~~~~~~ 434 (435)
++.+.+
T Consensus 464 v~~~~~ 469 (481)
T PLN02992 464 TKECQR 469 (481)
T ss_pred HHHHHH
Confidence 998864
No 7
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=3.7e-60 Score=460.04 Aligned_cols=397 Identities=28% Similarity=0.435 Sum_probs=306.6
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCCCCC-CC-C---CCCCCceEEEccCCCCCCCCCCCCCCCC
Q 013836 12 RNGRRVILFPLPFQGHINPMLQLGSILYS-EGFSITIIHTTLNS-PN-S---CNYPHFEFCSFSDDGFSETYQPSKVADD 85 (435)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~La~~L~~-rGH~Vt~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (435)
|++.||+++|+|++||++|++.||+.|+. +|+.|||++++.+. .. . ....+++|+.++ ++++++.+ ....+
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~-dglp~g~~--~~~~~ 77 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFS-DGFDDGVI--SNTDD 77 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcC-CCCCCccc--ccccc
Confidence 56789999999999999999999999996 69999999997542 11 1 111369999999 88886622 11234
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHHHHHHhhhhhhhh
Q 013836 86 IPALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAASLSYAAFPILRE 165 (435)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 165 (435)
....+..+...+.+.++++++++.... .+++|||+|.+..|+..+|+++|||++.+++++++..+.++++....
T Consensus 78 ~~~~~~~~~~~~~~~l~~~l~~l~~~~-----~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~- 151 (455)
T PLN02152 78 VQNRLVNFERNGDKALSDFIEANLNGD-----SPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN- 151 (455)
T ss_pred HHHHHHHHHHhccHHHHHHHHHhhccC-----CCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC-
Confidence 555566666778888888888765321 34699999999999999999999999999999999988876543211
Q ss_pred cCCCCCCCCCCcccccCCCCCCcCCCCccccC--CCchHHHHHHHHhhhcc--cccEEEecchhhhchHHHHHhhhhccC
Q 013836 166 KGYLPIQDFQLEAPVIEFPPLRVKDIPLLKTQ--DSNNADKVLSLRDSQIM--ASSGIIWNSFEDLEQVELTAVHQQYYL 241 (435)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~l~ns~~~le~~~~~~~~~~~~~ 241 (435)
.....+|+++.++.++++..... ........+.+..+... .++.+++||+++||+.+++.++.
T Consensus 152 ---------~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~---- 218 (455)
T PLN02152 152 ---------NSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN---- 218 (455)
T ss_pred ---------CCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc----
Confidence 01124788877888888754321 12223344444444332 24699999999999999988865
Q ss_pred CCCeeeeCCCccCCC---CCCCC--C-CcccchhhhhhhcCCCCcEEEEEec--------------------------cc
Q 013836 242 SIPVFPIGPFHKCFP---ASSSS--L-LSQDQSSISWLDKQAPRSVIYVSFG--------------------------LA 289 (435)
Q Consensus 242 ~~pv~~vGp~~~~~~---~~~~~--~-~~~~~~l~~~l~~~~~~~vV~vs~G--------------------------~v 289 (435)
.|++.|||++.... ..... . .+.+.++.+|||++++++||||||| ++
T Consensus 219 -~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~ 297 (455)
T PLN02152 219 -IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVI 297 (455)
T ss_pred -CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 47999999975321 10001 1 1234579999999988999999999 22
Q ss_pred cCcc-------c----cCCCchhhHhhhcCCceEEeecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCch
Q 013836 290 RGAE-------W----LEPLPKGILEMVDGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQ 358 (435)
Q Consensus 290 ~~~~-------~----~~~l~~~~~~~~~~~~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ 358 (435)
+... . ...++++|.++.++|+++.+|+||.+||+|+++++|||||||||+.||+++|||||++|++.||
T Consensus 298 r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ 377 (455)
T PLN02152 298 TDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQ 377 (455)
T ss_pred ecCcccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccc
Confidence 2210 0 0024678888899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhccEEEeC--C--cCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 013836 359 MVNSRYVSHAWRVGLQLE--G--KLERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHI 432 (435)
Q Consensus 359 ~~na~~v~~~~G~g~~~~--~--~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 432 (435)
+.||+++++.+|+|+.+. . ..+.++|+++|+++|+| ++.+||++|+++++..++|+++||++++.+++|++.|
T Consensus 378 ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~-~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 378 PANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEE-KSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred hHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 999999988556776663 2 46999999999999975 3457999999999999999999999999999999876
No 8
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=3.2e-60 Score=463.74 Aligned_cols=399 Identities=27% Similarity=0.475 Sum_probs=298.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHH--HHhCCCeEEEEeCCCCCCCCC----CCCCceEEEccCCCCCCCCCCCCCCCCH
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSI--LYSEGFSITIIHTTLNSPNSC----NYPHFEFCSFSDDGFSETYQPSKVADDI 86 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~--L~~rGH~Vt~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (435)
++.||+++|+|++||++|++.||++ |++||++|||++++.+..... ....+++..++ +++|++. . .+.
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~-~glp~~~---~--~~~ 80 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFS-DGLPKDD---P--RAP 80 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECC-CCCCCCc---c--cCH
Confidence 4689999999999999999999999 569999999999986543321 12357777777 7777662 1 233
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHHHHHHhhhhhhhhc
Q 013836 87 PALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAASLSYAAFPILREK 166 (435)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 166 (435)
..++..+.+.+.+.+++.++. .++||||+|.+..|+..+|+++|||.+.+++.++.....+.++....
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~----------~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~-- 148 (456)
T PLN02210 81 ETLLKSLNKVGAKNLSKIIEE----------KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKT-- 148 (456)
T ss_pred HHHHHHHHHhhhHHHHHHHhc----------CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhcc--
Confidence 444544444444444333322 46999999999999999999999999999999998887766532211
Q ss_pred CCCCCCCC-CCcccccCCCCCCcCCCCccccCCCch-HHHHHHHHhhhcccccEEEecchhhhchHHHHHhhhhccCCCC
Q 013836 167 GYLPIQDF-QLEAPVIEFPPLRVKDIPLLKTQDSNN-ADKVLSLRDSQIMASSGIIWNSFEDLEQVELTAVHQQYYLSIP 244 (435)
Q Consensus 167 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~~~p 244 (435)
...+.... .....+|+++.++.++++......... +...+.+..+....++++++||+.++|+.+++.++.. .|
T Consensus 149 ~~~~~~~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~----~~ 224 (456)
T PLN02210 149 NSFPDLEDLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADL----KP 224 (456)
T ss_pred CCCCcccccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhc----CC
Confidence 11111110 111246777777888877533222222 2223334444456789999999999999999988874 57
Q ss_pred eeeeCCCccCC---CC-----CC--CCCCcccchhhhhhhcCCCCcEEEEEeccccCc----------------------
Q 013836 245 VFPIGPFHKCF---PA-----SS--SSLLSQDQSSISWLDKQAPRSVIYVSFGLARGA---------------------- 292 (435)
Q Consensus 245 v~~vGp~~~~~---~~-----~~--~~~~~~~~~l~~~l~~~~~~~vV~vs~G~v~~~---------------------- 292 (435)
+++|||++... .. .+ ...+..+.++.+||+++++++|||||||++...
T Consensus 225 v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~ 304 (456)
T PLN02210 225 VIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWV 304 (456)
T ss_pred EEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 99999997421 10 00 011344567999999988899999999932111
Q ss_pred ---cccCCCchhhHhhh-cCCceEEeecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhh
Q 013836 293 ---EWLEPLPKGILEMV-DGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHA 368 (435)
Q Consensus 293 ---~~~~~l~~~~~~~~-~~~~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~ 368 (435)
......++.+.++. ++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~ 384 (456)
T PLN02210 305 IRPKEKAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDV 384 (456)
T ss_pred EeCCccccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHH
Confidence 00111233444555 47888899999999999999999999999999999999999999999999999999999874
Q ss_pred hccEEEeCC-----cCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 013836 369 WRVGLQLEG-----KLERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIM 433 (435)
Q Consensus 369 ~G~g~~~~~-----~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 433 (435)
+|+|+.+.. .++.++|+++|+++|.+++|.+||+||+++++..++|+++|||+++.+++|++.+.
T Consensus 385 ~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 385 FGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred hCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 699999853 58999999999999988667889999999999999999999999999999999875
No 9
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.4e-60 Score=465.79 Aligned_cols=410 Identities=29% Similarity=0.460 Sum_probs=308.4
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCC---CCCceEEEccCCCCCCCCCCCCCCCC
Q 013836 11 PRNGRRVILFPLPFQGHINPMLQLGSILYSE--GFSITIIHTTLNSPNSCN---YPHFEFCSFSDDGFSETYQPSKVADD 85 (435)
Q Consensus 11 ~~~~~~il~~~~~~~GHv~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (435)
+..+.||+++|+|++||++|++.||++|++| ||+||+++++.+...... ..+++|..+| ++++.. .....+
T Consensus 7 ~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp-~~~p~~---~~~~~~ 82 (459)
T PLN02448 7 PTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIP-NVIPSE---LVRAAD 82 (459)
T ss_pred CCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECC-CCCCCc---cccccC
Confidence 4457899999999999999999999999999 999999999765433222 2479999999 666654 222234
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHHHHHHhhhhhhhh
Q 013836 86 IPALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAASLSYAAFPILRE 165 (435)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 165 (435)
....+..+...+...++++++++. .++||||+|.++.|+..+|+++|||++.++++++...+.+.+++....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~ 154 (459)
T PLN02448 83 FPGFLEAVMTKMEAPFEQLLDRLE--------PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQ 154 (459)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcC--------CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhh
Confidence 555555555556666666666552 368999999999999999999999999999999987777665443222
Q ss_pred cCCCCCCCC----CCcccccCCCCCCcCCCCccccCCCchHHHHHHHHhhhcccccEEEecchhhhchHHHHHhhhhccC
Q 013836 166 KGYLPIQDF----QLEAPVIEFPPLRVKDIPLLKTQDSNNADKVLSLRDSQIMASSGIIWNSFEDLEQVELTAVHQQYYL 241 (435)
Q Consensus 166 ~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~ 241 (435)
....+.... .....+|+++.++..+++...........+.+........+++.+++||+++||+.+++.++.. +
T Consensus 155 ~~~~~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~--~ 232 (459)
T PLN02448 155 NGHFPVELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSK--F 232 (459)
T ss_pred ccCCCCccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhh--c
Confidence 111122111 1112367777777777775432222233344444455566788999999999999999999886 5
Q ss_pred CCCeeeeCCCccCCCC---CCCCCC-cccchhhhhhhcCCCCcEEEEEeccccCcc---------ccCCCc---------
Q 013836 242 SIPVFPIGPFHKCFPA---SSSSLL-SQDQSSISWLDKQAPRSVIYVSFGLARGAE---------WLEPLP--------- 299 (435)
Q Consensus 242 ~~pv~~vGp~~~~~~~---~~~~~~-~~~~~l~~~l~~~~~~~vV~vs~G~v~~~~---------~~~~l~--------- 299 (435)
+.|++.|||+...... ...... +.+.++.+||+.++++++||||||.+.... +++..+
T Consensus 233 ~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~ 312 (459)
T PLN02448 233 PFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARG 312 (459)
T ss_pred CCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 5579999999764211 000011 122368999999888999999999432110 111111
Q ss_pred --hhhHhhhcCCceEEeecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCC
Q 013836 300 --KGILEMVDGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEG 377 (435)
Q Consensus 300 --~~~~~~~~~~~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~ 377 (435)
.++.+..++|+++.+|+||.+||+|+++++|||||||||+.||+++|||||++|++.||+.||+++++.||+|+.+..
T Consensus 313 ~~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~ 392 (459)
T PLN02448 313 EASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKR 392 (459)
T ss_pred chhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEec
Confidence 123334457899999999999999999999999999999999999999999999999999999999885688888742
Q ss_pred ------cCCHHHHHHHHHHHHcCC--chHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 013836 378 ------KLERKEIERAILRVMVKA--DSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIMS 434 (435)
Q Consensus 378 ------~~~~~~l~~~i~~vl~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 434 (435)
.+++++|+++|+++|+++ +|.+||++|++|++.+++|+.+|||+++.+++|++.+.+
T Consensus 393 ~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 393 EVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred ccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 479999999999999863 478999999999999999999999999999999999864
No 10
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=8.4e-60 Score=463.60 Aligned_cols=406 Identities=28% Similarity=0.437 Sum_probs=306.5
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCC----CeEEEEeCCCCCCC------------CCCCCCceEEEccCCCC-C
Q 013836 12 RNGRRVILFPLPFQGHINPMLQLGSILYSEG----FSITIIHTTLNSPN------------SCNYPHFEFCSFSDDGF-S 74 (435)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~La~~L~~rG----H~Vt~~~~~~~~~~------------~~~~~~~~~~~~~~~~~-~ 74 (435)
|+|.||+++|+|++||++|++.||+.|+.+| +.|||++++.+... .....++.+..+| ++. +
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp-~~~~p 79 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLP-AVEPP 79 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECC-CCCCC
Confidence 6788999999999999999999999999997 79999999754320 0011258999999 443 2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHHH
Q 013836 75 ETYQPSKVADDIPALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAAS 154 (435)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~ 154 (435)
++ ..+...++..+...+.+.+++.++.+. .+++|||+|.+..|+..+|+++|||++.|+++++...
T Consensus 80 ~~------~e~~~~~~~~~~~~~~~~l~~~L~~l~--------~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~ 145 (480)
T PLN00164 80 TD------AAGVEEFISRYIQLHAPHVRAAIAGLS--------CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAML 145 (480)
T ss_pred Cc------cccHHHHHHHHHHhhhHHHHHHHHhcC--------CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHH
Confidence 22 113334444455566666666665541 4579999999999999999999999999999999998
Q ss_pred HHHhhhhhhhhcCCCCCCCCCCcccccCCCCCCcCCCCccccCCCchHHHHHHHHhhhcccccEEEecchhhhchHHHHH
Q 013836 155 LSYAAFPILREKGYLPIQDFQLEAPVIEFPPLRVKDIPLLKTQDSNNADKVLSLRDSQIMASSGIIWNSFEDLEQVELTA 234 (435)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~ 234 (435)
+.+.+.+........+..+......+|+++.++..+++.............+....+...+++.+++||+.+||+.+++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 225 (480)
T PLN00164 146 ALMLRLPALDEEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAA 225 (480)
T ss_pred HHHhhhhhhcccccCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHH
Confidence 88776543211110011110011237888888888888543222222233333444556788999999999999999999
Q ss_pred hhhhcc-CC---CCeeeeCCCccCCCCCCCCCCcccchhhhhhhcCCCCcEEEEEec-----------------------
Q 013836 235 VHQQYY-LS---IPVFPIGPFHKCFPASSSSLLSQDQSSISWLDKQAPRSVIYVSFG----------------------- 287 (435)
Q Consensus 235 ~~~~~~-~~---~pv~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~G----------------------- 287 (435)
++.... .+ +|++.|||++..... ....+.+.++.+||+++++++|||||||
T Consensus 226 ~~~~~~~~~~~~~~v~~vGPl~~~~~~--~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~ 303 (480)
T PLN00164 226 IADGRCTPGRPAPTVYPIGPVISLAFT--PPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHR 303 (480)
T ss_pred HHhccccccCCCCceEEeCCCcccccc--CCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCC
Confidence 876310 01 359999999853211 1122345679999999989999999999
Q ss_pred ---cccCcc-----------ccCCCchhhHhhhcCCceEE-eecchhhhhcCCccceEeeccCccchHHHHhhCCCeeec
Q 013836 288 ---LARGAE-----------WLEPLPKGILEMVDGRGYIV-KWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQ 352 (435)
Q Consensus 288 ---~v~~~~-----------~~~~l~~~~~~~~~~~~~~~-~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~ 352 (435)
+++... ....+|+++.+++.++.+++ +|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 304 flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~ 383 (480)
T PLN00164 304 FLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPW 383 (480)
T ss_pred EEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeC
Confidence 122110 01127788888888777776 999999999999999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHhhhccEEEeCC------cCCHHHHHHHHHHHHcCC--chHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 013836 353 PYFGDQMVNSRYVSHAWRVGLQLEG------KLERKEIERAILRVMVKA--DSQEMRERATYLNEKVDICLQQGGSSYQS 424 (435)
Q Consensus 353 P~~~DQ~~na~~v~~~~G~g~~~~~------~~~~~~l~~~i~~vl~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 424 (435)
|+++||+.||+++.+.+|+|+.+.. .++.++|.++|+++|.++ +|+++|++|+++++.+++|+++||++++.
T Consensus 384 P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~ 463 (480)
T PLN00164 384 PLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAA 463 (480)
T ss_pred CccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 9999999999887544799999852 369999999999999864 37899999999999999999999999999
Q ss_pred HHHHHHHHHc
Q 013836 425 LGRLTDHIMS 434 (435)
Q Consensus 425 ~~~~~~~~~~ 434 (435)
+++|++.+.+
T Consensus 464 l~~~v~~~~~ 473 (480)
T PLN00164 464 LQRLAREIRH 473 (480)
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 11
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=4.3e-59 Score=451.58 Aligned_cols=405 Identities=24% Similarity=0.401 Sum_probs=302.0
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeCCCCCCCC------CC---CCCceEEEccCCCCCCCCCCCC
Q 013836 12 RNGRRVILFPLPFQGHINPMLQLGSILYSE-GFSITIIHTTLNSPNS------CN---YPHFEFCSFSDDGFSETYQPSK 81 (435)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~La~~L~~r-GH~Vt~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~ 81 (435)
|.+.||+++|+|++||++|++.||+.|+.+ |..||+++++.+.... .. ..++++..+| ....++..+..
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp-~~~~~~l~~~~ 79 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIP-SVDVDNLVEPD 79 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECC-CCccccCCCCC
Confidence 567899999999999999999999999987 9999999987543211 11 1258898888 32221210001
Q ss_pred CCCCHHHHHHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCC-eEEEcccchHHHHHHhhh
Q 013836 82 VADDIPALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLP-TIVLLTDSIAASLSYAAF 160 (435)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP-~v~~~~~~~~~~~~~~~~ 160 (435)
. +....+..+.+.+.+.++++++++. .+++|||+|.+..|+..+|+++||| .+.+++++++..+.++++
T Consensus 80 -~-~~~~~~~~~~~~~~~~~~~~l~~l~--------~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l 149 (470)
T PLN03015 80 -A-TIFTKMVVKMRAMKPAVRDAVKSMK--------RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYL 149 (470)
T ss_pred -c-cHHHHHHHHHHhchHHHHHHHHhcC--------CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhh
Confidence 1 3332333344566666777766653 3589999999999999999999999 578888888777666654
Q ss_pred hhhhhcCCCCCCCCCCcccccCCCCCCcCCCCccccCCCchHHHHHHHHhhhcccccEEEecchhhhchHHHHHhhhhcc
Q 013836 161 PILREKGYLPIQDFQLEAPVIEFPPLRVKDIPLLKTQDSNNADKVLSLRDSQIMASSGIIWNSFEDLEQVELTAVHQQYY 240 (435)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~ 240 (435)
+...........+......+|+++.++.++++....+........+.+..+...+++++++||+.+||+.+++.++..+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~ 229 (470)
T PLN03015 150 PVLDTVVEGEYVDIKEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDME 229 (470)
T ss_pred hhhhcccccccCCCCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcc
Confidence 43211100000010111247888888888888533222222233333444557889999999999999999998876300
Q ss_pred ----CCCCeeeeCCCccCCCCCCCCCCcccchhhhhhhcCCCCcEEEEEec--------------------------ccc
Q 013836 241 ----LSIPVFPIGPFHKCFPASSSSLLSQDQSSISWLDKQAPRSVIYVSFG--------------------------LAR 290 (435)
Q Consensus 241 ----~~~pv~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~G--------------------------~v~ 290 (435)
..+|++.|||++.... ....+.++.+|||++++++||||||| +++
T Consensus 230 ~~~~~~~~v~~VGPl~~~~~-----~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r 304 (470)
T PLN03015 230 LNRVMKVPVYPIGPIVRTNV-----HVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLR 304 (470)
T ss_pred cccccCCceEEecCCCCCcc-----cccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEe
Confidence 0246999999985321 11223469999999988999999999 232
Q ss_pred Cc-----------c-ccCCCchhhHhhhcCCceEE-eecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCc
Q 013836 291 GA-----------E-WLEPLPKGILEMVDGRGYIV-KWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGD 357 (435)
Q Consensus 291 ~~-----------~-~~~~l~~~~~~~~~~~~~~~-~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~D 357 (435)
.. + ..+.+|++|.+++.++.+++ +|+||.+||+|+++++|||||||||+.||+++|||||++|++.|
T Consensus 305 ~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~D 384 (470)
T PLN03015 305 RPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAE 384 (470)
T ss_pred cCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccc
Confidence 11 0 11247889988888888665 99999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhccEEEeC----C-cCCHHHHHHHHHHHHcC--CchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 013836 358 QMVNSRYVSHAWRVGLQLE----G-KLERKEIERAILRVMVK--ADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTD 430 (435)
Q Consensus 358 Q~~na~~v~~~~G~g~~~~----~-~~~~~~l~~~i~~vl~~--~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 430 (435)
|+.||+++++.+|+|+.+. . .++.++|.++|+++|.+ ++|.++|+||++|++..++|+++|||+++.++.+++
T Consensus 385 Q~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~ 464 (470)
T PLN03015 385 QWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAK 464 (470)
T ss_pred hHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999999955589999995 2 58999999999999963 458999999999999999999999999999999998
Q ss_pred HH
Q 013836 431 HI 432 (435)
Q Consensus 431 ~~ 432 (435)
.+
T Consensus 465 ~~ 466 (470)
T PLN03015 465 RC 466 (470)
T ss_pred hc
Confidence 76
No 12
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=4.6e-59 Score=456.88 Aligned_cols=411 Identities=25% Similarity=0.349 Sum_probs=297.9
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----CCCCceEEEccC---CCCCCCCCCCCCC
Q 013836 11 PRNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSC----NYPHFEFCSFSD---DGFSETYQPSKVA 83 (435)
Q Consensus 11 ~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~~~ 83 (435)
...++||+++|+|++||++|++.||+.|+.+|+.|||++|+.+..... ...++++..++. +++|++.++....
T Consensus 6 ~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~~~ 85 (477)
T PLN02863 6 KPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVKDL 85 (477)
T ss_pred cCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChhhc
Confidence 345799999999999999999999999999999999999987653211 123577776551 3566553322111
Q ss_pred C-CHHHHHHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHHHHHHhhhhh
Q 013836 84 D-DIPALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAASLSYAAFPI 162 (435)
Q Consensus 84 ~-~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~ 162 (435)
. +....+......+...+.+.++.. . .+++|||+|.+..|+..+|+++|||++.|++++++..+.+++...
T Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~l~~~----~----~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~ 157 (477)
T PLN02863 86 PPSGFPLMIHALGELYAPLLSWFRSH----P----SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWR 157 (477)
T ss_pred chhhHHHHHHHHHHhHHHHHHHHHhC----C----CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhh
Confidence 1 111112222222333333333321 1 468999999999999999999999999999999999988876432
Q ss_pred hhhcCCCCCCC-CCC-cccccCCCCCCcCCCCcccc--CCCchHHHHHHHHhhhcccccEEEecchhhhchHHHHHhhhh
Q 013836 163 LREKGYLPIQD-FQL-EAPVIEFPPLRVKDIPLLKT--QDSNNADKVLSLRDSQIMASSGIIWNSFEDLEQVELTAVHQQ 238 (435)
Q Consensus 163 ~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~ 238 (435)
..+....+... ... ...+|+++.++.++++.... .........+.+.......++++++||+++||+.+++.++..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 237 (477)
T PLN02863 158 EMPTKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKE 237 (477)
T ss_pred cccccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhh
Confidence 11000000000 011 12367777788888874331 112223333434444456778899999999999999999885
Q ss_pred ccCC-CCeeeeCCCccCCCC------CCCCCCcccchhhhhhhcCCCCcEEEEEec------------------------
Q 013836 239 YYLS-IPVFPIGPFHKCFPA------SSSSLLSQDQSSISWLDKQAPRSVIYVSFG------------------------ 287 (435)
Q Consensus 239 ~~~~-~pv~~vGp~~~~~~~------~~~~~~~~~~~l~~~l~~~~~~~vV~vs~G------------------------ 287 (435)
++ +|++.|||++..... ++.+....++++.+||+.+++++|||||||
T Consensus 238 --~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~f 315 (477)
T PLN02863 238 --LGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHF 315 (477)
T ss_pred --cCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcE
Confidence 44 469999999753211 001111124569999999988999999999
Q ss_pred --cccCcc----ccCCCchhhHhhhcCC-ceEEeecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhH
Q 013836 288 --LARGAE----WLEPLPKGILEMVDGR-GYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMV 360 (435)
Q Consensus 288 --~v~~~~----~~~~l~~~~~~~~~~~-~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~ 360 (435)
+++... ....+|.++.+++.++ +++.+|+||.+||+|++|++|||||||||++||+++|||||++|++.||+.
T Consensus 316 lw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~ 395 (477)
T PLN02863 316 IWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFV 395 (477)
T ss_pred EEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchh
Confidence 122111 0224777887776544 455699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccEEEeCC----cCCHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 013836 361 NSRYVSHAWRVGLQLEG----KLERKEIERAILRVM-VKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIMS 434 (435)
Q Consensus 361 na~~v~~~~G~g~~~~~----~~~~~~l~~~i~~vl-~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 434 (435)
||+++++.+|+|+.+.. ..+.+++.++|+++| ++ ++||+||+++++..++|+++||++++.+++|++.+.+
T Consensus 396 na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~---~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~ 471 (477)
T PLN02863 396 NASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSEN---QVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVE 471 (477)
T ss_pred hHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHH
Confidence 99997654899999842 468999999999999 44 8999999999999999999999999999999999875
No 13
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=4.1e-59 Score=452.95 Aligned_cols=388 Identities=21% Similarity=0.309 Sum_probs=282.2
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCceEEEcc--C-CCCCCCCCCCCCCCC
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCN----YPHFEFCSFS--D-DGFSETYQPSKVADD 85 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~----~~~~~~~~~~--~-~~~~~~~~~~~~~~~ 85 (435)
+++||+++|+|++||++|++.||+.|+++||+|||++++.+...... ..++.+..++ + ++++++. ....+
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~---~~~~~ 79 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGA---ETTSD 79 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCc---ccccc
Confidence 46899999999999999999999999999999999999754432211 1245566554 1 4566552 22222
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHHHHHHhhhhhhhh
Q 013836 86 IPALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAASLSYAAFPILRE 165 (435)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 165 (435)
+...+..+.......+.+.++++.+. .++||||+| +..|+..+|+++|||++.++++++.... +.+.+.
T Consensus 80 l~~~l~~~~~~~~~~~~~~l~~~L~~------~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~--- 148 (442)
T PLN02208 80 IPISMDNLLSEALDLTRDQVEAAVRA------LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG--- 148 (442)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh------CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc---
Confidence 32222222222223344444444432 468999999 5789999999999999999999998654 333221
Q ss_pred cCCCCCCCCCCcccccCCCC----CCcCCCCccccCCCchHHHHHH-HHhhhcccccEEEecchhhhchHHHHHhhhhcc
Q 013836 166 KGYLPIQDFQLEAPVIEFPP----LRVKDIPLLKTQDSNNADKVLS-LRDSQIMASSGIIWNSFEDLEQVELTAVHQQYY 240 (435)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~ 240 (435)
.... ..+|+++. ++.++++.. .........+. ...+...+++.+++||+.+||+.++++++..
T Consensus 149 -~~~~-------~~~pglp~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~-- 216 (442)
T PLN02208 149 -GKLG-------VPPPGYPSSKVLFRENDAHAL--ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQ-- 216 (442)
T ss_pred -cccC-------CCCCCCCCcccccCHHHcCcc--cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhh--
Confidence 0000 11355543 344455532 11122222222 3334566889999999999999999988765
Q ss_pred CCCCeeeeCCCccCCCCCCCCCCcccchhhhhhhcCCCCcEEEEEecc--------------------------ccCc--
Q 013836 241 LSIPVFPIGPFHKCFPASSSSLLSQDQSSISWLDKQAPRSVIYVSFGL--------------------------ARGA-- 292 (435)
Q Consensus 241 ~~~pv~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~G~--------------------------v~~~-- 292 (435)
+.++++.|||++..... ... .+.++.+|||.+++++|||||||+ ++..
T Consensus 217 ~~~~v~~vGpl~~~~~~--~~~--~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~ 292 (442)
T PLN02208 217 YHKKVLLTGPMFPEPDT--SKP--LEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRG 292 (442)
T ss_pred cCCCEEEEeecccCcCC--CCC--CHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence 44569999999865321 112 234599999999889999999992 2211
Q ss_pred --cccCCCchhhHhhhcCCce-EEeecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhh
Q 013836 293 --EWLEPLPKGILEMVDGRGY-IVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAW 369 (435)
Q Consensus 293 --~~~~~l~~~~~~~~~~~~~-~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~ 369 (435)
+....+|++|.+++.++.+ +.+|+||.+||+|+++++|||||||||+.||+++|||||++|++.||+.||+++++.+
T Consensus 293 ~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~ 372 (442)
T PLN02208 293 SSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEF 372 (442)
T ss_pred ccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHh
Confidence 0113478888888765554 4599999999999999999999999999999999999999999999999999877657
Q ss_pred ccEEEeCC-c---CCHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 013836 370 RVGLQLEG-K---LERKEIERAILRVMVKAD--SQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIMS 434 (435)
Q Consensus 370 G~g~~~~~-~---~~~~~l~~~i~~vl~~~~--~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 434 (435)
|+|+.++. . ++.++|.++|+++|++++ |+++|++|+++++.+. ++|++++.+++|++.+++
T Consensus 373 g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 373 EVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEELQE 439 (442)
T ss_pred ceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHH
Confidence 99999975 3 899999999999998742 7889999999999985 688999999999999875
No 14
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=6.8e-59 Score=458.97 Aligned_cols=405 Identities=27% Similarity=0.444 Sum_probs=298.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEeCCCCCCCC-------C--C---CCCceEEEccCCCCCCCCCC
Q 013836 14 GRRVILFPLPFQGHINPMLQLGSILYSEG--FSITIIHTTLNSPNS-------C--N---YPHFEFCSFSDDGFSETYQP 79 (435)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~La~~L~~rG--H~Vt~~~~~~~~~~~-------~--~---~~~~~~~~~~~~~~~~~~~~ 79 (435)
|+||+++|+|++||++|++.||+.|+.+| ..|||++|+.+.... . . .+++++..+| ++.+..
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp-~~~~~~--- 77 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVIS-AGDQPT--- 77 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcC-CCCCCc---
Confidence 68999999999999999999999999998 889999998664310 0 1 2368999999 554322
Q ss_pred CCCCCCHHHHHHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHHHHHHhh
Q 013836 80 SKVADDIPALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAASLSYAA 159 (435)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~ 159 (435)
.. . .... .+...+...+++.++++.....+.+..+.+|||+|.+..|+..+|+++|||++.|++++++..+.+.+
T Consensus 78 ~~---~-~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~ 152 (481)
T PLN02554 78 TE---D-PTFQ-SYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLH 152 (481)
T ss_pred cc---c-hHHH-HHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHh
Confidence 11 1 1222 22334455556666655432100000224899999999999999999999999999999999988876
Q ss_pred hhhhhhcCCCC---CCCCCCcccccCCC-CCCcCCCCccccCCCchHHHHHHHHhhhcccccEEEecchhhhchHHHHHh
Q 013836 160 FPILREKGYLP---IQDFQLEAPVIEFP-PLRVKDIPLLKTQDSNNADKVLSLRDSQIMASSGIIWNSFEDLEQVELTAV 235 (435)
Q Consensus 160 ~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~ 235 (435)
.+......-.+ ..+......+|+++ +++..+++..... ......+.+....+..++++++||+.++|..+...+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~--~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l 230 (481)
T PLN02554 153 VQMLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLS--KEWLPLFLAQARRFREMKGILVNTVAELEPQALKFF 230 (481)
T ss_pred hhhhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccC--HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHH
Confidence 54322111111 11111112377774 6777777743321 122344444555677899999999999999988888
Q ss_pred hhhccCCCCeeeeCCCc-cCCCCCCCCCCcccchhhhhhhcCCCCcEEEEEecc--------------------------
Q 013836 236 HQQYYLSIPVFPIGPFH-KCFPASSSSLLSQDQSSISWLDKQAPRSVIYVSFGL-------------------------- 288 (435)
Q Consensus 236 ~~~~~~~~pv~~vGp~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~G~-------------------------- 288 (435)
.......++++.|||++ ..... .....+.+.++.+||+++++++|||||||+
T Consensus 231 ~~~~~~~~~v~~vGpl~~~~~~~-~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~ 309 (481)
T PLN02554 231 SGSSGDLPPVYPVGPVLHLENSG-DDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWS 309 (481)
T ss_pred HhcccCCCCEEEeCCCccccccc-cccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEE
Confidence 74200114599999994 33221 000112234699999999888999999991
Q ss_pred ccCcc------------cc-CCCchhhHhhhcCCceEEeecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCC
Q 013836 289 ARGAE------------WL-EPLPKGILEMVDGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYF 355 (435)
Q Consensus 289 v~~~~------------~~-~~l~~~~~~~~~~~~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~ 355 (435)
++... .. ..+|++|.+++++|+++++|+||.+||+|+++++|||||||||+.||+++|||||++|++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~ 389 (481)
T PLN02554 310 LRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLY 389 (481)
T ss_pred EcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCcc
Confidence 11100 00 125888888899999999999999999999999999999999999999999999999999
Q ss_pred CchhHHH-HHHHhhhccEEEeC------------CcCCHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHHHhcCCCh
Q 013836 356 GDQMVNS-RYVSHAWRVGLQLE------------GKLERKEIERAILRVMV-KADSQEMRERATYLNEKVDICLQQGGSS 421 (435)
Q Consensus 356 ~DQ~~na-~~v~~~~G~g~~~~------------~~~~~~~l~~~i~~vl~-~~~~~~~~~~a~~l~~~~~~~~~~~g~~ 421 (435)
+||+.|| +++++ +|+|+.++ ..++.++|.++|+++|+ | ++||+||+++++.+++|+++||++
T Consensus 390 ~DQ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~---~~~r~~a~~l~~~~~~av~~gGss 465 (481)
T PLN02554 390 AEQKFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD---SDVRKRVKEMSEKCHVALMDGGSS 465 (481)
T ss_pred ccchhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCChH
Confidence 9999999 45777 79999985 15899999999999997 6 899999999999999999999999
Q ss_pred HHHHHHHHHHHHc
Q 013836 422 YQSLGRLTDHIMS 434 (435)
Q Consensus 422 ~~~~~~~~~~~~~ 434 (435)
+.+++.|++.|..
T Consensus 466 ~~~l~~lv~~~~~ 478 (481)
T PLN02554 466 HTALKKFIQDVTK 478 (481)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999864
No 15
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=5.3e-59 Score=451.43 Aligned_cols=398 Identities=25% Similarity=0.444 Sum_probs=294.3
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCC--CeEEE--EeCCCCCC-------CC-CCCCCceEEEccCCCCCCCCCC
Q 013836 12 RNGRRVILFPLPFQGHINPMLQLGSILYSEG--FSITI--IHTTLNSP-------NS-CNYPHFEFCSFSDDGFSETYQP 79 (435)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~La~~L~~rG--H~Vt~--~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~ 79 (435)
|.+-||+++|+|++||++|++.||+.|+.+| +.||+ ++++.+.. .. ...+++++..+| ++.+..-.
T Consensus 1 ~~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp-~~~~~~~~- 78 (451)
T PLN03004 1 MGEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLP-AVTPYSSS- 78 (451)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcC-CCCCCCCc-
Confidence 5678999999999999999999999999998 55665 44433221 10 112469999999 65532200
Q ss_pred CCCCCCHHHHHHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHHHHHHhh
Q 013836 80 SKVADDIPALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAASLSYAA 159 (435)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~ 159 (435)
.....+....+......+...+++.++.+... .+++|||+|.+..|+..+|+++|||++.+++++++..+.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~ 152 (451)
T PLN03004 79 STSRHHHESLLLEILCFSNPSVHRTLFSLSRN------FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFY 152 (451)
T ss_pred cccccCHHHHHHHHHHhhhHHHHHHHHhcCCC------CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHH
Confidence 11112333344344456666677777665321 346999999999999999999999999999999999888776
Q ss_pred hhhhhhcCCCCCCCCCCcccccCCCCCCcCCCCccccCCCchHHHHHHHHhhhcccccEEEecchhhhchHHHHHhhhhc
Q 013836 160 FPILREKGYLPIQDFQLEAPVIEFPPLRVKDIPLLKTQDSNNADKVLSLRDSQIMASSGIIWNSFEDLEQVELTAVHQQY 239 (435)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~ 239 (435)
.+..................+|+++.++.++++.............+.........++.+++||+++||+.+++.+++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~- 231 (451)
T PLN03004 153 LPTIDETTPGKNLKDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEE- 231 (451)
T ss_pred HHhccccccccccccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhc-
Confidence 5432111000000011112478888888888885442233333444555555667889999999999999999999774
Q ss_pred cCC-CCeeeeCCCccCCCCCCCCCCcccchhhhhhhcCCCCcEEEEEec--------------------------cccCc
Q 013836 240 YLS-IPVFPIGPFHKCFPASSSSLLSQDQSSISWLDKQAPRSVIYVSFG--------------------------LARGA 292 (435)
Q Consensus 240 ~~~-~pv~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~G--------------------------~v~~~ 292 (435)
+. +|++.|||++....... .....+.++.+|||++++++||||||| .++..
T Consensus 232 -~~~~~v~~vGPl~~~~~~~~-~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~ 309 (451)
T PLN03004 232 -LCFRNIYPIGPLIVNGRIED-RNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNP 309 (451)
T ss_pred -CCCCCEEEEeeeccCccccc-cccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 32 46999999975322100 111223569999999988999999999 22321
Q ss_pred c-------ccCC-CchhhHhhhcCCc-eEEeecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHHH
Q 013836 293 E-------WLEP-LPKGILEMVDGRG-YIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSR 363 (435)
Q Consensus 293 ~-------~~~~-l~~~~~~~~~~~~-~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~ 363 (435)
. .... +|++|.+++.++. ++.+|+||.+||+|+++++|||||||||+.||+++|||||++|++.||+.||+
T Consensus 310 ~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~ 389 (451)
T PLN03004 310 PELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRV 389 (451)
T ss_pred ccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHH
Confidence 0 0122 7888888887654 55699999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccEEEeCC----cCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHH
Q 013836 364 YVSHAWRVGLQLEG----KLERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQ 423 (435)
Q Consensus 364 ~v~~~~G~g~~~~~----~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 423 (435)
++++.+|+|+.++. .++.++|.++|+++|+| ++||++|+++++..+.|+++||||++
T Consensus 390 ~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~---~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 390 MIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGE---CPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99754799999963 47999999999999998 89999999999999999999999875
No 16
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=8.9e-59 Score=458.76 Aligned_cols=410 Identities=27% Similarity=0.425 Sum_probs=292.6
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC--------CC----CceEEEccC--CCCCCCCC
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCN--------YP----HFEFCSFSD--DGFSETYQ 78 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~--------~~----~~~~~~~~~--~~~~~~~~ 78 (435)
+++||+++|+|++||++|++.||++|+.|||+|||++++.+...... .+ .+.+..+|+ +++|++.+
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 46799999999999999999999999999999999999865422110 11 334455552 35665532
Q ss_pred CCCC-----CCCHHHHHHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHH
Q 013836 79 PSKV-----ADDIPALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAA 153 (435)
Q Consensus 79 ~~~~-----~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~ 153 (435)
+... ......++..+. .....+.+.++++.+. .+|||||+|.++.|+..+|+++|||++.|++++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~------~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~ 156 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFL-FSTKYFKDQLEKLLET------TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFS 156 (482)
T ss_pred cccccccccccchHHHHHHHH-HHHHHHHHHHHHHHhc------CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHH
Confidence 2211 111223333333 3333455555555543 579999999999999999999999999999999887
Q ss_pred HHHHhhhhhhhhcCCCCCCCCCCcccccCCC---CCCcCCCCccccCCCchHHHHHHHHhhhcccccEEEecchhhhchH
Q 013836 154 SLSYAAFPILREKGYLPIQDFQLEAPVIEFP---PLRVKDIPLLKTQDSNNADKVLSLRDSQIMASSGIIWNSFEDLEQV 230 (435)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~ 230 (435)
.+..+......+....+... ....+|+++ .++..+++.. .........+....+...+++.+++||+++||++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~--~~~~~pg~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~ 232 (482)
T PLN03007 157 LCASYCIRVHKPQKKVASSS--EPFVIPDLPGDIVITEEQINDA--DEESPMGKFMKEVRESEVKSFGVLVNSFYELESA 232 (482)
T ss_pred HHHHHHHHhcccccccCCCC--ceeeCCCCCCccccCHHhcCCC--CCchhHHHHHHHHHhhcccCCEEEEECHHHHHHH
Confidence 76655332111111111100 011256654 2333334321 2223344455555566788899999999999999
Q ss_pred HHHHhhhhccCCCCeeeeCCCccCCCC------CCCCCCcccchhhhhhhcCCCCcEEEEEeccc---------------
Q 013836 231 ELTAVHQQYYLSIPVFPIGPFHKCFPA------SSSSLLSQDQSSISWLDKQAPRSVIYVSFGLA--------------- 289 (435)
Q Consensus 231 ~~~~~~~~~~~~~pv~~vGp~~~~~~~------~~~~~~~~~~~l~~~l~~~~~~~vV~vs~G~v--------------- 289 (435)
+++.+++. ...++++|||+...... ........+.++.+||+++++++|||||||++
T Consensus 233 ~~~~~~~~--~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l 310 (482)
T PLN03007 233 YADFYKSF--VAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGL 310 (482)
T ss_pred HHHHHHhc--cCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHH
Confidence 99888875 44569999998653211 00011112356999999998899999999921
Q ss_pred -----------cCc----cccCCCchhhHhhh-cCCceEEeecchhhhhcCCccceEeeccCccchHHHHhhCCCeeecc
Q 013836 290 -----------RGA----EWLEPLPKGILEMV-DGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQP 353 (435)
Q Consensus 290 -----------~~~----~~~~~l~~~~~~~~-~~~~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P 353 (435)
+.. +....+|++|.+++ +.|+++.+|+||.+||+|+++++|||||||||+.||+++|||||++|
T Consensus 311 ~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P 390 (482)
T PLN03007 311 EGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWP 390 (482)
T ss_pred HHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeecc
Confidence 111 00124777887776 45666679999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHhhhccEEEe--------CC-cCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 013836 354 YFGDQMVNSRYVSHAWRVGLQL--------EG-KLERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQS 424 (435)
Q Consensus 354 ~~~DQ~~na~~v~~~~G~g~~~--------~~-~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 424 (435)
++.||+.||+++++.+++|+.+ +. .++.++|+++|+++|.|++|++||++|+++++.+++|+++||+++..
T Consensus 391 ~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~ 470 (482)
T PLN03007 391 VGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFND 470 (482)
T ss_pred chhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999999999887434455443 23 58999999999999998667799999999999999999999999999
Q ss_pred HHHHHHHHHcC
Q 013836 425 LGRLTDHIMSL 435 (435)
Q Consensus 425 ~~~~~~~~~~~ 435 (435)
+++|++.+.++
T Consensus 471 l~~~v~~~~~~ 481 (482)
T PLN03007 471 LNKFMEELNSR 481 (482)
T ss_pred HHHHHHHHHhc
Confidence 99999998764
No 17
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=7.2e-59 Score=452.34 Aligned_cols=400 Identities=24% Similarity=0.329 Sum_probs=292.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC-----CCCCceEEEccC---CCCCCCCCCCCCCCC
Q 013836 14 GRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSC-----NYPHFEFCSFSD---DGFSETYQPSKVADD 85 (435)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 85 (435)
+.||+++|+|++||++|++.||+.|+.||+.|||++++.+..... ...++++..+|. +++|++.+ ...+
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~---~~~~ 82 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAE---SSTD 82 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCcc---cccc
Confidence 579999999999999999999999999999999999987653221 113588888872 45665422 1222
Q ss_pred HH----HHHHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHHHHHHhhhh
Q 013836 86 IP----ALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAASLSYAAFP 161 (435)
Q Consensus 86 ~~----~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~ 161 (435)
.. ..+....+.+.+.+ +++.+. .+++|||+|.+..|+..+|+++|||++.++++++...+.+++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~----~~~l~~------~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~ 152 (472)
T PLN02670 83 VPYTKQQLLKKAFDLLEPPL----TTFLET------SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPS 152 (472)
T ss_pred cchhhHHHHHHHHHHhHHHH----HHHHHh------CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhH
Confidence 21 12222333344444 444332 35899999999999999999999999999999998887765322
Q ss_pred hhhhcCCCCCCCCCCcccccCCC------CCCcCCCCcccc--CCCchHHHHHHHHhhhcccccEEEecchhhhchHHHH
Q 013836 162 ILREKGYLPIQDFQLEAPVIEFP------PLRVKDIPLLKT--QDSNNADKVLSLRDSQIMASSGIIWNSFEDLEQVELT 233 (435)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~ 233 (435)
.....+..+..+..+ ..+|++. .++..+++.... .........+.+......+++++++||+.+||+.+++
T Consensus 153 ~~~~~~~~~~~~~~~-~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~ 231 (472)
T PLN02670 153 SLMEGGDLRSTAEDF-TVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFD 231 (472)
T ss_pred hhhhcccCCCccccc-cCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHH
Confidence 111111111111111 1134331 234445553321 1111222333334444667899999999999999999
Q ss_pred HhhhhccCCCCeeeeCCCccCC-CCCCCCCC--cccchhhhhhhcCCCCcEEEEEec-----------------------
Q 013836 234 AVHQQYYLSIPVFPIGPFHKCF-PASSSSLL--SQDQSSISWLDKQAPRSVIYVSFG----------------------- 287 (435)
Q Consensus 234 ~~~~~~~~~~pv~~vGp~~~~~-~~~~~~~~--~~~~~l~~~l~~~~~~~vV~vs~G----------------------- 287 (435)
.++.. ++.|++.|||++... ........ ..+.++.+|||++++++|||||||
T Consensus 232 ~l~~~--~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~ 309 (472)
T PLN02670 232 LLSDL--YRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETP 309 (472)
T ss_pred HHHHh--hCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCC
Confidence 99875 456799999997531 11000101 112469999999988999999999
Q ss_pred ---cccCc-c----ccCCCchhhHhhhcCCceEE-eecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCch
Q 013836 288 ---LARGA-E----WLEPLPKGILEMVDGRGYIV-KWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQ 358 (435)
Q Consensus 288 ---~v~~~-~----~~~~l~~~~~~~~~~~~~~~-~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ 358 (435)
+++.. + ....+|++|.+++.++++++ +|+||.+||+|+++++|||||||||+.||+++|||||++|++.||
T Consensus 310 FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ 389 (472)
T PLN02670 310 FFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQ 389 (472)
T ss_pred EEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhcc
Confidence 12211 1 12248888888888887775 999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhccEEEeCC-----cCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 013836 359 MVNSRYVSHAWRVGLQLEG-----KLERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIM 433 (435)
Q Consensus 359 ~~na~~v~~~~G~g~~~~~-----~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 433 (435)
+.||+++++ +|+|+.+.. .++.++|+++|+++|.+++|++||+||+++++.++ +.++..++++.+++++.
T Consensus 390 ~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~----~~~~~~~~~~~~~~~l~ 464 (472)
T PLN02670 390 GLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFG----DMDRNNRYVDELVHYLR 464 (472)
T ss_pred HHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHh----CcchhHHHHHHHHHHHH
Confidence 999999998 799999964 38999999999999988667799999999999999 78999999999999987
Q ss_pred c
Q 013836 434 S 434 (435)
Q Consensus 434 ~ 434 (435)
+
T Consensus 465 ~ 465 (472)
T PLN02670 465 E 465 (472)
T ss_pred H
Confidence 5
No 18
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.4e-58 Score=446.77 Aligned_cols=388 Identities=23% Similarity=0.356 Sum_probs=286.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC---CC-C--ceEEEccC-CCCCCCCCCCCCCCCH
Q 013836 14 GRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCN---YP-H--FEFCSFSD-DGFSETYQPSKVADDI 86 (435)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~---~~-~--~~~~~~~~-~~~~~~~~~~~~~~~~ 86 (435)
|+||+++|++++||++|++.||+.|+.+|+.|||++++.+...... .+ + +.+..+|. +++|++.++ ..++
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~---~~~~ 81 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTET---VSEI 81 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCcccc---cccC
Confidence 6899999999999999999999999999999999999866432211 11 2 66666763 566655221 1111
Q ss_pred H-HHHHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHHHHHHhhhhhhhh
Q 013836 87 P-ALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAASLSYAAFPILRE 165 (435)
Q Consensus 87 ~-~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 165 (435)
. .....+.... ..+...++.+.+. .++||||+|. ..|+..+|+++|||++.++++++...+.+.. +.
T Consensus 82 ~~~~~~~~~~a~-~~~~~~~~~~l~~------~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~--- 149 (453)
T PLN02764 82 PVTSADLLMSAM-DLTRDQVEVVVRA------VEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG--- 149 (453)
T ss_pred ChhHHHHHHHHH-HHhHHHHHHHHHh------CCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc---
Confidence 1 1122222211 1223333444332 3579999995 8899999999999999999999988777642 11
Q ss_pred cCCCCCCCCCCcccccCCC----CCCcCCCCcccc----CCCchHHHHHHHHhhhcccccEEEecchhhhchHHHHHhhh
Q 013836 166 KGYLPIQDFQLEAPVIEFP----PLRVKDIPLLKT----QDSNNADKVLSLRDSQIMASSGIIWNSFEDLEQVELTAVHQ 237 (435)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~ 237 (435)
..++ ..+|+++ .++.++++.... .........+.+.......++.+++||+.+||+.++++++.
T Consensus 150 -~~~~-------~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~ 221 (453)
T PLN02764 150 -GELG-------VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEK 221 (453)
T ss_pred -ccCC-------CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHh
Confidence 0100 1124544 244444443210 01112333444444556788999999999999999999987
Q ss_pred hccCCCCeeeeCCCccCCCCCCCCCCcccchhhhhhhcCCCCcEEEEEec--------------------------cccC
Q 013836 238 QYYLSIPVFPIGPFHKCFPASSSSLLSQDQSSISWLDKQAPRSVIYVSFG--------------------------LARG 291 (435)
Q Consensus 238 ~~~~~~pv~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~G--------------------------~v~~ 291 (435)
. +++|++.|||++..... . ...+.++.+|||+|++++||||||| +++.
T Consensus 222 ~--~~~~v~~VGPL~~~~~~---~-~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~ 295 (453)
T PLN02764 222 H--CRKKVLLTGPVFPEPDK---T-RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKP 295 (453)
T ss_pred h--cCCcEEEeccCccCccc---c-ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 4 34569999999754311 1 1123469999999999999999999 3332
Q ss_pred c----cccCCCchhhHhhhcCCceEE-eecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHHHHHH
Q 013836 292 A----EWLEPLPKGILEMVDGRGYIV-KWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVS 366 (435)
Q Consensus 292 ~----~~~~~l~~~~~~~~~~~~~~~-~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~ 366 (435)
. +....+|++|++++.++++++ +|+||.+||+|++|++|||||||||++||+++|||||++|++.||+.||++++
T Consensus 296 ~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~ 375 (453)
T PLN02764 296 PRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLS 375 (453)
T ss_pred CCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHH
Confidence 1 112358999999988887766 99999999999999999999999999999999999999999999999999997
Q ss_pred hhhccEEEeCC----cCCHHHHHHHHHHHHcCC--chHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 013836 367 HAWRVGLQLEG----KLERKEIERAILRVMVKA--DSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIMS 434 (435)
Q Consensus 367 ~~~G~g~~~~~----~~~~~~l~~~i~~vl~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 434 (435)
+.+|+|+.+.. .++.++|.++|+++|+++ .|.++|++++++++.++ +||++++.+++|++.+..
T Consensus 376 ~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~~lv~~~~~ 445 (453)
T PLN02764 376 DELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVDNFIESLQD 445 (453)
T ss_pred HHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHH
Confidence 54899999753 389999999999999873 37889999999999997 899999999999999875
No 19
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.9e-58 Score=451.52 Aligned_cols=410 Identities=26% Similarity=0.413 Sum_probs=292.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC------C--CCCceEEEccC----CCCCCCCCCCC
Q 013836 14 GRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSC------N--YPHFEFCSFSD----DGFSETYQPSK 81 (435)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~------~--~~~~~~~~~~~----~~~~~~~~~~~ 81 (435)
+.||+++|+|++||++|++.||+.|+.+|+.|||++|+.+..... . ...++|+.+|. +++|++.++..
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~~ 87 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENLD 87 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccccc
Confidence 479999999999999999999999999999999999987643211 1 12388888871 46766532211
Q ss_pred CCCCHHHHHHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHHHHHHhhhh
Q 013836 82 VADDIPALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAASLSYAAFP 161 (435)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~ 161 (435)
.. ....++..+.... ..+...++++.+... .++||||+|.+..|+..+|+++|||++.|++++++..+.++.+.
T Consensus 88 ~~-~~~~~~~~~~~~~-~~l~~~l~~lL~~~~----~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~ 161 (491)
T PLN02534 88 TL-PSRDLLRKFYDAV-DKLQQPLERFLEQAK----PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIR 161 (491)
T ss_pred cC-CcHHHHHHHHHHH-HHhHHHHHHHHHhcC----CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHH
Confidence 11 1112332222222 123333333333211 46899999999999999999999999999999998877643321
Q ss_pred hhhhcCCCCCCCCCCcccccCCCC---CCcCCCCccccCCCchHHHHHHHHhhhcccccEEEecchhhhchHHHHHhhhh
Q 013836 162 ILREKGYLPIQDFQLEAPVIEFPP---LRVKDIPLLKTQDSNNADKVLSLRDSQIMASSGIIWNSFEDLEQVELTAVHQQ 238 (435)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~ 238 (435)
.... ..+.........+|+++. ++..+++...... ................++.+++|||.+||+.+++.++..
T Consensus 162 ~~~~--~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~-~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~ 238 (491)
T PLN02534 162 LHNA--HLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSL-PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKA 238 (491)
T ss_pred Hhcc--cccCCCCCceeecCCCCccccccHHHCChhhcCc-ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhh
Confidence 1111 111111111234677663 6666666432111 112222222222234577999999999999999999876
Q ss_pred ccCCCCeeeeCCCccCCCC---C--CCCCCc-ccchhhhhhhcCCCCcEEEEEec-------------------------
Q 013836 239 YYLSIPVFPIGPFHKCFPA---S--SSSLLS-QDQSSISWLDKQAPRSVIYVSFG------------------------- 287 (435)
Q Consensus 239 ~~~~~pv~~vGp~~~~~~~---~--~~~~~~-~~~~l~~~l~~~~~~~vV~vs~G------------------------- 287 (435)
++.|++.|||++..... . ...... .+.++.+|||++++++|||||||
T Consensus 239 --~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~fl 316 (491)
T PLN02534 239 --IKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFI 316 (491)
T ss_pred --cCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEE
Confidence 55569999999753211 0 000111 23459999999988999999999
Q ss_pred -cccCcc---ccC--CCchhhHhhhc-CCceEEeecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhH
Q 013836 288 -LARGAE---WLE--PLPKGILEMVD-GRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMV 360 (435)
Q Consensus 288 -~v~~~~---~~~--~l~~~~~~~~~-~~~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~ 360 (435)
+++... ... .+|++|.+++. .++++.+|+||.+||+|++++||||||||||++||+++|||||++|++.||+.
T Consensus 317 W~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~ 396 (491)
T PLN02534 317 WVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFL 396 (491)
T ss_pred EEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHH
Confidence 222110 011 25788887754 55556699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccEEEeC-------------C-cCCHHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 013836 361 NSRYVSHAWRVGLQLE-------------G-KLERKEIERAILRVMV--KADSQEMRERATYLNEKVDICLQQGGSSYQS 424 (435)
Q Consensus 361 na~~v~~~~G~g~~~~-------------~-~~~~~~l~~~i~~vl~--~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 424 (435)
||+++++.||+|+.+. . ..+.++|.++|+++|. +++|.++|+||++|++.+++|+.+||||++.
T Consensus 397 na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~n 476 (491)
T PLN02534 397 NEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHIN 476 (491)
T ss_pred HHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 9999987699999873 1 2789999999999997 4457899999999999999999999999999
Q ss_pred HHHHHHHHHc
Q 013836 425 LGRLTDHIMS 434 (435)
Q Consensus 425 ~~~~~~~~~~ 434 (435)
+++|++.|.+
T Consensus 477 l~~fv~~i~~ 486 (491)
T PLN02534 477 LSILIQDVLK 486 (491)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 20
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.4e-57 Score=448.91 Aligned_cols=413 Identities=26% Similarity=0.409 Sum_probs=298.5
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCC---CeEEEEeCCCCCCC---------CCCCCCceEEEccCCCC-CCCCC
Q 013836 12 RNGRRVILFPLPFQGHINPMLQLGSILYSEG---FSITIIHTTLNSPN---------SCNYPHFEFCSFSDDGF-SETYQ 78 (435)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~La~~L~~rG---H~Vt~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~ 78 (435)
|++.||+++|+|++||++|++.||+.|+.+| +.||++++..+... ....++++|..+| +.. +...+
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp-~~~~p~~~~ 79 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLP-EVQDPPPME 79 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECC-CCCCCcccc
Confidence 5678999999999999999999999999998 45677776433210 1112369999999 433 21100
Q ss_pred CCCCCCCHHHHHHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHHHHHHh
Q 013836 79 PSKVADDIPALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAASLSYA 158 (435)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~ 158 (435)
.........+..+...+...+++.++++..+.....+.+++|||+|.+..|+..+|+++|||++.|++++++..+.++
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~ 157 (475)
T PLN02167 80 --LFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMK 157 (475)
T ss_pred --ccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHH
Confidence 001122223333445566667777776643210000024699999999999999999999999999999998888776
Q ss_pred hhhhhhhcCCCCCCCC--CCcccccCCC-CCCcCCCCccccCCCchHHHHHHHHhhhcccccEEEecchhhhchHHHHHh
Q 013836 159 AFPILREKGYLPIQDF--QLEAPVIEFP-PLRVKDIPLLKTQDSNNADKVLSLRDSQIMASSGIIWNSFEDLEQVELTAV 235 (435)
Q Consensus 159 ~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~ 235 (435)
+.+............. .....+|+++ .++..+++...... .....+....+...+++.+++||+.+||+.+++.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l 235 (475)
T PLN02167 158 YLPERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMK--ESYEAWVEIAERFPEAKGILVNSFTELEPNAFDYF 235 (475)
T ss_pred HHHHhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCc--chHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHH
Confidence 5443211100000000 0112367873 57777776432121 11233334455567899999999999999999988
Q ss_pred hhhccC-C-CCeeeeCCCccCCCCCCCCC-CcccchhhhhhhcCCCCcEEEEEecc------------------------
Q 013836 236 HQQYYL-S-IPVFPIGPFHKCFPASSSSL-LSQDQSSISWLDKQAPRSVIYVSFGL------------------------ 288 (435)
Q Consensus 236 ~~~~~~-~-~pv~~vGp~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~vV~vs~G~------------------------ 288 (435)
+.. . . +|++.|||++.......... ...+.++.+||+.+++++|||||||+
T Consensus 236 ~~~--~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~fl 313 (475)
T PLN02167 236 SRL--PENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFL 313 (475)
T ss_pred Hhh--cccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEE
Confidence 652 1 1 35999999986432100011 11235699999999889999999991
Q ss_pred --ccCc-cc----cCCCchhhHhhhcCCceEEeecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHH
Q 013836 289 --ARGA-EW----LEPLPKGILEMVDGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVN 361 (435)
Q Consensus 289 --v~~~-~~----~~~l~~~~~~~~~~~~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~n 361 (435)
++.. .. ...+|++|.+++.+++++++|+||.+||+|++|++|||||||||++||+++|||||++|+++||+.|
T Consensus 314 w~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~n 393 (475)
T PLN02167 314 WSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLN 393 (475)
T ss_pred EEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhh
Confidence 1111 00 1237888988888999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-HHhhhccEEEeCC--------cCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 013836 362 SRY-VSHAWRVGLQLEG--------KLERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHI 432 (435)
Q Consensus 362 a~~-v~~~~G~g~~~~~--------~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 432 (435)
|++ +++ +|+|+.+.. .++.++|.++|+++|.++ ++||++|+++++.+++|+++||++++.+++|++.|
T Consensus 394 a~~~~~~-~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~--~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i 470 (475)
T PLN02167 394 AFTMVKE-LGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE--DVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDL 470 (475)
T ss_pred HHHHHHH-hCeeEEeecccccccCCcccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 976 566 899998842 469999999999999863 58999999999999999999999999999999998
Q ss_pred Hc
Q 013836 433 MS 434 (435)
Q Consensus 433 ~~ 434 (435)
.+
T Consensus 471 ~~ 472 (475)
T PLN02167 471 LG 472 (475)
T ss_pred Hh
Confidence 64
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=1.2e-57 Score=443.26 Aligned_cols=388 Identities=21% Similarity=0.300 Sum_probs=280.7
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCceEEEc--cC-CCCCCCCCCCCCCCC
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCN----YPHFEFCSF--SD-DGFSETYQPSKVADD 85 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~----~~~~~~~~~--~~-~~~~~~~~~~~~~~~ 85 (435)
.+.||+++|+|++||++|++.||+.|+++|++|||++++.+...... ..++.|..+ |. +++|++. +...+
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~---e~~~~ 79 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGA---ETASD 79 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcc---ccccc
Confidence 36799999999999999999999999999999999999765432211 124777544 32 5666552 22222
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHHHHHHhhhhhhhh
Q 013836 86 IPALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAASLSYAAFPILRE 165 (435)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 165 (435)
+..............+...++.+.+. .+|||||+|. ..|+..+|+++|||++.|++.++...+.+.+ +. ..
T Consensus 80 l~~~~~~~~~~a~~~l~~~l~~~L~~------~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~~-~~ 150 (446)
T PLN00414 80 LPNSTKKPIFDAMDLLRDQIEAKVRA------LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA-PR-AE 150 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhc------CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC-cH-hh
Confidence 21111112222223344444444432 4689999995 8899999999999999999999988877654 21 00
Q ss_pred cCCCCCCCCCCcccccCCCC----CCcCCC--CccccCCCchHHHHHHHHhhhcccccEEEecchhhhchHHHHHhhhhc
Q 013836 166 KGYLPIQDFQLEAPVIEFPP----LRVKDI--PLLKTQDSNNADKVLSLRDSQIMASSGIIWNSFEDLEQVELTAVHQQY 239 (435)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~----~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~ 239 (435)
.. ..+|+++. ++..+. +... .. ....+.+..+...+++.+++||+.+||+.+++.++..
T Consensus 151 ~~----------~~~pg~p~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~- 215 (446)
T PLN00414 151 LG----------FPPPDYPLSKVALRGHDANVCSLF-AN---SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQ- 215 (446)
T ss_pred cC----------CCCCCCCCCcCcCchhhcccchhh-cc---cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHh-
Confidence 00 01233332 111111 1111 00 1223334445567789999999999999999999885
Q ss_pred cCCCCeeeeCCCccCCCCCCCCCCcccchhhhhhhcCCCCcEEEEEec--------------------------cccCc-
Q 013836 240 YLSIPVFPIGPFHKCFPASSSSLLSQDQSSISWLDKQAPRSVIYVSFG--------------------------LARGA- 292 (435)
Q Consensus 240 ~~~~pv~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~G--------------------------~v~~~- 292 (435)
+++|++.|||+...... ......+.++.+|||+|++++||||||| +++..
T Consensus 216 -~~~~v~~VGPl~~~~~~--~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~ 292 (446)
T PLN00414 216 -CQRKVLLTGPMLPEPQN--KSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPK 292 (446)
T ss_pred -cCCCeEEEcccCCCccc--ccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence 44569999999754321 0111123458999999999999999999 33321
Q ss_pred ---cccCCCchhhHhhhcCCceEE-eecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhh
Q 013836 293 ---EWLEPLPKGILEMVDGRGYIV-KWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHA 368 (435)
Q Consensus 293 ---~~~~~l~~~~~~~~~~~~~~~-~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~ 368 (435)
+..+.+|++|++++.++.+++ +|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.
T Consensus 293 ~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~ 372 (446)
T PLN00414 293 GSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEE 372 (446)
T ss_pred CcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHH
Confidence 112258999999999998887 9999999999999999999999999999999999999999999999999999744
Q ss_pred hccEEEeCC----cCCHHHHHHHHHHHHcCC--chHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 013836 369 WRVGLQLEG----KLERKEIERAILRVMVKA--DSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIMS 434 (435)
Q Consensus 369 ~G~g~~~~~----~~~~~~l~~~i~~vl~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 434 (435)
+|+|+.+.. .++.++|+++|+++|.++ .|.+||++|+++++.+.+ +||++ ..+++|++.+++
T Consensus 373 ~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~---~gg~s-s~l~~~v~~~~~ 440 (446)
T PLN00414 373 LEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVS---PGLLS-GYADKFVEALEN 440 (446)
T ss_pred hCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHc---CCCcH-HHHHHHHHHHHH
Confidence 899999964 389999999999999763 267899999999999753 56634 338999988865
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=5.5e-50 Score=396.66 Aligned_cols=392 Identities=20% Similarity=0.198 Sum_probs=268.5
Q ss_pred CEEEEE-cCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCceEEEccCCCCCC---CCCCC---CC---C
Q 013836 15 RRVILF-PLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS-PNSCNYPHFEFCSFSDDGFSE---TYQPS---KV---A 83 (435)
Q Consensus 15 ~~il~~-~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~---~ 83 (435)
.||+.+ |.++.||+..+.+|+++|++|||+||++++.... .......+++.+.++ ...+. .++.. .. .
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~ 99 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLCGNITEIDAS-LSVEYFKKLVKSSAVFRKRGVV 99 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccCCCCCEEEEEcC-CChHHHHHHHhhhhHHHhhhhh
Confidence 457755 8899999999999999999999999999884321 111123556665554 11110 00000 00 0
Q ss_pred CCHH----HHHHHHHHhcchHHHH-HHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHc-CCCeEEEcccchHHHHHH
Q 013836 84 DDIP----ALLLSLNAKCIVPFRD-CLANKLMSNAQESKDSFACLITDAAWFIALSVANDF-KLPTIVLLTDSIAASLSY 157 (435)
Q Consensus 84 ~~~~----~~~~~~~~~~~~~l~~-~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~-giP~v~~~~~~~~~~~~~ 157 (435)
.+.. ..+..+...|...+.+ .+.++.+..+ .+||+||+|.+..|+..+|+++ ++|.|.+++.........
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~----~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~~ 175 (507)
T PHA03392 100 ADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKN----NKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENFE 175 (507)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCC----CceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHHH
Confidence 0101 1122223445555543 2333332111 6799999999889999999999 999988887666544333
Q ss_pred hhhhhhhhcCCCCCCC------CCCcccccCCCCCCcCCCC--ccccCCCchHHHHHH----HHhhhcccccEEEecchh
Q 013836 158 AAFPILREKGYLPIQD------FQLEAPVIEFPPLRVKDIP--LLKTQDSNNADKVLS----LRDSQIMASSGIIWNSFE 225 (435)
Q Consensus 158 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~ns~~ 225 (435)
...+.|.+++|+|... +.+++|+.|+....+.... ...........+++. ...+..++.+.+|+|+++
T Consensus 176 ~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~lvns~~ 255 (507)
T PHA03392 176 TMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLLFVNVHP 255 (507)
T ss_pred hhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEEEEecCc
Confidence 3222677778887643 4556666665311100000 000011111222222 134455778999999999
Q ss_pred hhchHHHHHhhhhccCCCC-eeeeCCCccCCCCCCCCCCcccchhhhhhhcCCCCcEEEEEeccccCc------------
Q 013836 226 DLEQVELTAVHQQYYLSIP-VFPIGPFHKCFPASSSSLLSQDQSSISWLDKQAPRSVIYVSFGLARGA------------ 292 (435)
Q Consensus 226 ~le~~~~~~~~~~~~~~~p-v~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~G~v~~~------------ 292 (435)
.++++ +|. +| +++|||++.+... .+++ ++++.+|++.. ++++||||||.+..+
T Consensus 256 ~~d~~-----rp~----~p~v~~vGgi~~~~~~--~~~l--~~~l~~fl~~~-~~g~V~vS~GS~~~~~~~~~~~~~~~l 321 (507)
T PHA03392 256 VFDNN-----RPV----PPSVQYLGGLHLHKKP--PQPL--DDYLEEFLNNS-TNGVVYVSFGSSIDTNDMDNEFLQMLL 321 (507)
T ss_pred cccCC-----CCC----CCCeeeecccccCCCC--CCCC--CHHHHHHHhcC-CCcEEEEECCCCCcCCCCCHHHHHHHH
Confidence 99988 885 55 9999999875421 1233 44599999875 457999999964321
Q ss_pred cccCCCchhhHh---------hhcCCceEEeecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHHH
Q 013836 293 EWLEPLPKGILE---------MVDGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSR 363 (435)
Q Consensus 293 ~~~~~l~~~~~~---------~~~~~~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~ 363 (435)
+++..++..+++ ..++|+++.+|+||.+||+|+++++||||||+||+.||+++|||||++|++.||+.||+
T Consensus 322 ~a~~~l~~~viw~~~~~~~~~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~ 401 (507)
T PHA03392 322 RTFKKLPYNVLWKYDGEVEAINLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTN 401 (507)
T ss_pred HHHHhCCCeEEEEECCCcCcccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHH
Confidence 133444444332 34689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccEEEeCC-cCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHH
Q 013836 364 YVSHAWRVGLQLEG-KLERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQG-GSSYQSLGRLTDHI 432 (435)
Q Consensus 364 ~v~~~~G~g~~~~~-~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~-g~~~~~~~~~~~~~ 432 (435)
|+++ +|+|+.+++ .+++++|.++|+++|+| ++||++|+++++.+++ .. .+..+++.-++..+
T Consensus 402 rv~~-~G~G~~l~~~~~t~~~l~~ai~~vl~~---~~y~~~a~~ls~~~~~---~p~~~~~~av~~iE~v~ 465 (507)
T PHA03392 402 KYVE-LGIGRALDTVTVSAAQLVLAIVDVIEN---PKYRKNLKELRHLIRH---QPMTPLHKAIWYTEHVI 465 (507)
T ss_pred HHHH-cCcEEEeccCCcCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 9999 699999998 89999999999999999 9999999999999996 22 35666766665443
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=2.1e-51 Score=413.54 Aligned_cols=369 Identities=24% Similarity=0.335 Sum_probs=221.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCceEEEccCCCCCCCCCCCCCCCCH--------
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS-PNSCNYPHFEFCSFSDDGFSETYQPSKVADDI-------- 86 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 86 (435)
||+++|. +.||+.++..|+++|++|||+||++++.... .......++++..++ ...+.... .......
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~ 78 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNPSKPSNIRFETYP-DPYPEEEF-EEIFPEFISKFFSES 78 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT------S-CCEEEE------TT-------TTHHHHHHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccccccccccceeeEEEc-CCcchHHH-hhhhHHHHHHHhhhc
Confidence 6788884 7899999999999999999999999984311 111223466777776 44432200 0001110
Q ss_pred ------HHHHHH-------HHHhcchHHHH--HHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccch
Q 013836 87 ------PALLLS-------LNAKCIVPFRD--CLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSI 151 (435)
Q Consensus 87 ------~~~~~~-------~~~~~~~~l~~--~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~ 151 (435)
...+.. +...|...+.+ +++.+.. .++|++|+|.+..|+..+|+.+++|.+.+.++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~-------~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~ 151 (500)
T PF00201_consen 79 SFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS-------EKFDLVISDAFDPCGLALAHYLGIPVIIISSSTP 151 (500)
T ss_dssp CCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH-------HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCS
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-------hccccceEeeccchhHHHHHHhcCCeEEEecccc
Confidence 111111 11222222211 2233333 4699999999989999999999999987655433
Q ss_pred HHHHHHhhhhhhhhcCCCCCCC------CCCcccccCCCCC-Cc----CCCCccccCCCchHHHHHHHHhhhcccccEEE
Q 013836 152 AASLSYAAFPILREKGYLPIQD------FQLEAPVIEFPPL-RV----KDIPLLKTQDSNNADKVLSLRDSQIMASSGII 220 (435)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 220 (435)
.........+.+.+++++|... ..+.+|+.++... .. ..+..............-....+.+.+.+.++
T Consensus 152 ~~~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 231 (500)
T PF00201_consen 152 MYDLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELLSNASLVL 231 (500)
T ss_dssp CSCCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHHHHHHHCC
T ss_pred cchhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHHHHHHHHHh
Confidence 3222222224566677777643 3445555554311 00 00000000000000000011233345677889
Q ss_pred ecchhhhchHHHHHhhhhccCCCC-eeeeCCCccCCCCCCCCCCcccchhhhhhhcCCCCcEEEEEeccccCc-------
Q 013836 221 WNSFEDLEQVELTAVHQQYYLSIP-VFPIGPFHKCFPASSSSLLSQDQSSISWLDKQAPRSVIYVSFGLARGA------- 292 (435)
Q Consensus 221 ~ns~~~le~~~~~~~~~~~~~~~p-v~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~G~v~~~------- 292 (435)
+|+++.++++ +|. .| +++|||++.... ++++. ++.+|++..+.+++||||||.+...
T Consensus 232 ~ns~~~ld~p-----rp~----~p~v~~vGgl~~~~~----~~l~~--~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~ 296 (500)
T PF00201_consen 232 INSHPSLDFP-----RPL----LPNVVEVGGLHIKPA----KPLPE--ELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLK 296 (500)
T ss_dssp SSTEEE---------HHH----HCTSTTGCGC-S--------TCHH--HHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHH
T ss_pred hhccccCcCC-----cch----hhcccccCccccccc----ccccc--ccchhhhccCCCCEEEEecCcccchhHHHHHH
Confidence 9999989877 887 56 999999988654 34444 4899998755789999999954321
Q ss_pred ---cccCCCchhhHhh--------hcCCceEEeecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHH
Q 013836 293 ---EWLEPLPKGILEM--------VDGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVN 361 (435)
Q Consensus 293 ---~~~~~l~~~~~~~--------~~~~~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~n 361 (435)
++++.+|..++|. +++|+++.+|+||.+||+|+++++||||||+||+.||+++|||||++|+++||+.|
T Consensus 297 ~~~~~~~~~~~~~iW~~~~~~~~~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~n 376 (500)
T PF00201_consen 297 EIAEAFENLPQRFIWKYEGEPPENLPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRN 376 (500)
T ss_dssp HHHHHHHCSTTEEEEEETCSHGCHHHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHH
T ss_pred HHHHHHhhCCCcccccccccccccccceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCCCCcccCCcc
Confidence 2355667666653 45899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccEEEeCC-cCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Q 013836 362 SRYVSHAWRVGLQLEG-KLERKEIERAILRVMVKADSQEMRERATYLNEKVDI 413 (435)
Q Consensus 362 a~~v~~~~G~g~~~~~-~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~ 413 (435)
|+++++ .|+|+.+++ .+|.++|.++|+++|+| ++|++||+++++.+++
T Consensus 377 a~~~~~-~G~g~~l~~~~~~~~~l~~ai~~vl~~---~~y~~~a~~ls~~~~~ 425 (500)
T PF00201_consen 377 AARVEE-KGVGVVLDKNDLTEEELRAAIREVLEN---PSYKENAKRLSSLFRD 425 (500)
T ss_dssp HHHHHH-TTSEEEEGGGC-SHHHHHHHHHHHHHS---HHHHHHHHHHHHTTT-
T ss_pred ceEEEE-EeeEEEEEecCCcHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhc
Confidence 999999 599999998 99999999999999999 8999999999999986
No 24
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=4.7e-41 Score=329.43 Aligned_cols=360 Identities=16% Similarity=0.178 Sum_probs=226.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEccCCCCCCCCCCCCC--------CCCH
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSDDGFSETYQPSKV--------ADDI 86 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 86 (435)
|||+|+++|+.||++|+++||++|++|||+|++++++... ...+..|++|..++ +..+........ ....
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~-~~v~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 78 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFA-DLVEAAGLEFVPVG-GDPDELLASPERNAGLLLLGPGLL 78 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHH-HHHHHcCCceeeCC-CCHHHHHhhhhhcccccccchHHH
Confidence 7999999999999999999999999999999999995432 22334789999988 443221110000 1111
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHHHHHHhhhhhhhhc
Q 013836 87 PALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAASLSYAAFPILREK 166 (435)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 166 (435)
......+...+...++++++.+.+ .+||+||+|.+..++..+|+++|||++.+++++........ .+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~---~~~-- 146 (401)
T cd03784 79 LGALRLLRREAEAMLDDLVAAARD-------WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFP---PPL-- 146 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-------cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCC---Ccc--
Confidence 222333444444555555554433 68999999998899999999999999999887654322100 000
Q ss_pred CCCCCCCCCCcccccCCCCCCcCCCCccccCCCchHHHHHHHHhhhcc---------cccEEEecchhhhchHHHHHhhh
Q 013836 167 GYLPIQDFQLEAPVIEFPPLRVKDIPLLKTQDSNNADKVLSLRDSQIM---------ASSGIIWNSFEDLEQVELTAVHQ 237 (435)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~ns~~~le~~~~~~~~~ 237 (435)
.... .. .+ ...... .........+........ ..+..+....+.+.+. ++
T Consensus 147 ---~~~~----~~-----~~---~~~~~~-~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 205 (401)
T cd03784 147 ---GRAN----LR-----LY---ALLEAE-LWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPP-----PP 205 (401)
T ss_pred ---chHH----HH-----HH---HHHHHH-HHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCC-----CC
Confidence 0000 00 00 000000 000000011111111110 0111222112222211 33
Q ss_pred hccCCCCeeeeC-CCccCCCCCCCCCCcccchhhhhhhcCCCCcEEEEEeccccCc--c--------ccCCCchhhH---
Q 013836 238 QYYLSIPVFPIG-PFHKCFPASSSSLLSQDQSSISWLDKQAPRSVIYVSFGLARGA--E--------WLEPLPKGIL--- 303 (435)
Q Consensus 238 ~~~~~~pv~~vG-p~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~G~v~~~--~--------~~~~l~~~~~--- 303 (435)
. ++....++| ++..... ....+.++..|+++ .+++||||||.+... + ++..++..++
T Consensus 206 ~--~~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~ 276 (401)
T cd03784 206 D--WPRFDLVTGYGFRDVPY-----NGPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSL 276 (401)
T ss_pred C--ccccCcEeCCCCCCCCC-----CCCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEc
Confidence 3 333366775 3332221 12234457888876 567999999954221 0 1111111111
Q ss_pred -------hhhcCCceEEeecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeC
Q 013836 304 -------EMVDGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLE 376 (435)
Q Consensus 304 -------~~~~~~~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~ 376 (435)
...++|+++.+|+||.++|+++++ ||||||+||++||+++|||+|++|+..||+.||+++++ +|+|+.+.
T Consensus 277 g~~~~~~~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~-~G~g~~l~ 353 (401)
T cd03784 277 GWGGLGAEDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAE-LGAGPALD 353 (401)
T ss_pred cCccccccCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHH-CCCCCCCC
Confidence 123578999999999999999999 99999999999999999999999999999999999999 69999998
Q ss_pred C-cCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 013836 377 G-KLERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLT 429 (435)
Q Consensus 377 ~-~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 429 (435)
. .++.++|.++|+++|++ ++++++++.+++++ ..++...+++.++
T Consensus 354 ~~~~~~~~l~~al~~~l~~----~~~~~~~~~~~~~~----~~~g~~~~~~~ie 399 (401)
T cd03784 354 PRELTAERLAAALRRLLDP----PSRRRAAALLRRIR----EEDGVPSAADVIE 399 (401)
T ss_pred cccCCHHHHHHHHHHHhCH----HHHHHHHHHHHHHH----hccCHHHHHHHHh
Confidence 7 78999999999999997 56667777877776 3455666665554
No 25
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.1e-40 Score=325.57 Aligned_cols=354 Identities=17% Similarity=0.229 Sum_probs=232.1
Q ss_pred cCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEccCCCCCCCCCCCCC--CCCHHHHHHHHHHhcc
Q 013836 21 PLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSDDGFSETYQPSKV--ADDIPALLLSLNAKCI 98 (435)
Q Consensus 21 ~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 98 (435)
.+|+.||++|+++||++|++|||+|++++++.+... ....|+.|..++ ...... +.... ..+....+..+...+.
T Consensus 2 ~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~-v~~~G~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 78 (392)
T TIGR01426 2 NIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAER-VEAAGAEFVLYG-SALPPP-DNPPENTEEEPIDIIEKLLDEAE 78 (392)
T ss_pred CCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHH-HHHcCCEEEecC-CcCccc-cccccccCcchHHHHHHHHHHHH
Confidence 578999999999999999999999999999544333 334789999998 443321 00100 1233444444444444
Q ss_pred hHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHHHHHHhhhhhhhhcCCCCCCCCCCcc
Q 013836 99 VPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAASLSYAAFPILREKGYLPIQDFQLEA 178 (435)
Q Consensus 99 ~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (435)
..+..+.+.+.. .+||+||+|.++.++..+|+.+|||+|.+++.+.... . ++.+. .+... ..+.
T Consensus 79 ~~~~~l~~~~~~-------~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~--~--~~~~~----~~~~~-~~~~ 142 (392)
T TIGR01426 79 DVLPQLEEAYKG-------DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE--E--FEEMV----SPAGE-GSAE 142 (392)
T ss_pred HHHHHHHHHhcC-------CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc--c--ccccc----cccch-hhhh
Confidence 444444433333 6799999999888999999999999998865432110 0 01000 01100 0000
Q ss_pred cccCCCCCCcCCCCccccCCCchHHHHHHHHhhh------------cccccEEEecchhhhchHHHHHhhhhccCCCCee
Q 013836 179 PVIEFPPLRVKDIPLLKTQDSNNADKVLSLRDSQ------------IMASSGIIWNSFEDLEQVELTAVHQQYYLSIPVF 246 (435)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~ns~~~le~~~~~~~~~~~~~~~pv~ 246 (435)
..+.. .+.+ ......+...... ....+..+..+.+.|+++ .+. ++.+++
T Consensus 143 ~~~~~----~~~~--------~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~-----~~~--~~~~~~ 203 (392)
T TIGR01426 143 EGAIA----ERGL--------AEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPA-----GET--FDDSFT 203 (392)
T ss_pred hhccc----cchh--------HHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCC-----ccc--cCCCeE
Confidence 00000 0000 0000111111100 111222344444444433 444 445599
Q ss_pred eeCCCccCCCCCCCCCCcccchhhhhhhcCCCCcEEEEEeccccCcc---------ccCCCch------------hhHhh
Q 013836 247 PIGPFHKCFPASSSSLLSQDQSSISWLDKQAPRSVIYVSFGLARGAE---------WLEPLPK------------GILEM 305 (435)
Q Consensus 247 ~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~G~v~~~~---------~~~~l~~------------~~~~~ 305 (435)
++||+...... ...|....+++++||||||.+.... ++..++. .-...
T Consensus 204 ~~Gp~~~~~~~-----------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~~~~~ 272 (392)
T TIGR01426 204 FVGPCIGDRKE-----------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDPADLGE 272 (392)
T ss_pred EECCCCCCccc-----------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCChhHhcc
Confidence 99997654321 1236655567889999999532110 1111111 11123
Q ss_pred hcCCceEEeecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCC-cCCHHHH
Q 013836 306 VDGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEG-KLERKEI 384 (435)
Q Consensus 306 ~~~~~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l 384 (435)
.++|+.+.+|+||.++|+++++ +|||||+||++||+++|+|+|++|...||+.||+++++ +|+|..+.. .+++++|
T Consensus 273 ~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~g~g~~l~~~~~~~~~l 349 (392)
T TIGR01426 273 LPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE-LGLGRHLPPEEVTAEKL 349 (392)
T ss_pred CCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH-CCCEEEeccccCCHHHH
Confidence 4678999999999999999998 99999999999999999999999999999999999999 699999987 8999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 013836 385 ERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIM 433 (435)
Q Consensus 385 ~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 433 (435)
.++|.++|+| ++|+++++++++++. ..++...+++.+++.+.
T Consensus 350 ~~ai~~~l~~---~~~~~~~~~l~~~~~----~~~~~~~aa~~i~~~~~ 391 (392)
T TIGR01426 350 REAVLAVLSD---PRYAERLRKMRAEIR----EAGGARRAADEIEGFLA 391 (392)
T ss_pred HHHHHHHhcC---HHHHHHHHHHHHHHH----HcCCHHHHHHHHHHhhc
Confidence 9999999999 899999999999999 45677888888877654
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=9.2e-39 Score=308.51 Aligned_cols=375 Identities=19% Similarity=0.183 Sum_probs=223.9
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCHHHHHHHH
Q 013836 14 GRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSL 93 (435)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (435)
+|||+++..|+.||++|.++|+++|.++||+|+++|++. +....+..|+.|..++ ....+. +......+....+...
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~-~~~~ve~ag~~f~~~~-~~~~~~-~~~~~~~~~~~~~~~~ 77 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGK-FKEFVEAAGLAFVAYP-IRDSEL-ATEDGKFAGVKSFRRL 77 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHH-HHHHHHHhCcceeecc-ccCChh-hhhhhhhhccchhHHH
Confidence 599999999999999999999999999999999999953 3333334678888888 321111 0011111111111112
Q ss_pred HHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHHHHHHh-hhhhhhhcCCCCCC
Q 013836 94 NAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAASLSYA-AFPILREKGYLPIQ 172 (435)
Q Consensus 94 ~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 172 (435)
.........+.++-+.+ ..+|+++.|.-.. ...+++..++|++.....+........ +.+.....+..+..
T Consensus 78 ~~~~~~~~~~~~~~~~e-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (406)
T COG1819 78 LQQFKKLIRELLELLRE-------LEPDLVVDDARLS-LGLAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGKLPIP 149 (406)
T ss_pred hhhhhhhhHHHHHHHHh-------cchhhhhcchhhh-hhhhhhhcccchhhhhhhhccCCcccccCccccccccccccc
Confidence 23333333444555555 5799999986443 338899999999886555444322111 00000000000000
Q ss_pred CCCCcccccCCCCCCcCCCCccccCCCch--HHHHHHHHhhhcccccEEEecchhhhchHHHHHh-hhhccCCCC--eee
Q 013836 173 DFQLEAPVIEFPPLRVKDIPLLKTQDSNN--ADKVLSLRDSQIMASSGIIWNSFEDLEQVELTAV-HQQYYLSIP--VFP 247 (435)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~-~~~~~~~~p--v~~ 247 (435)
. -..+ .+........+... .........+.....-.-+..+-..++..+.+.. .+. ...| ..+
T Consensus 150 ~-------~~~~---~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~ 217 (406)
T COG1819 150 L-------YPLP---PRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPG--DRLPFIGPY 217 (406)
T ss_pred c-------cccC---hhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCC--CCCCCCcCc
Confidence 0 0000 00000000000000 0000000000000000000000111111111100 000 0023 666
Q ss_pred eCCCccCCCCCCCCCCcccchhhhhhhcCCCCcEEEEEeccccCc--------cccCCCchhh----------HhhhcCC
Q 013836 248 IGPFHKCFPASSSSLLSQDQSSISWLDKQAPRSVIYVSFGLARGA--------EWLEPLPKGI----------LEMVDGR 309 (435)
Q Consensus 248 vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~G~v~~~--------~~~~~l~~~~----------~~~~~~~ 309 (435)
+||+...... ++..|... .+++||||||.+... +++..++..+ ....++|
T Consensus 218 ~~~~~~~~~~----------~~~~~~~~--d~~~vyvslGt~~~~~~l~~~~~~a~~~l~~~vi~~~~~~~~~~~~~p~n 285 (406)
T COG1819 218 IGPLLGEAAN----------ELPYWIPA--DRPIVYVSLGTVGNAVELLAIVLEALADLDVRVIVSLGGARDTLVNVPDN 285 (406)
T ss_pred cccccccccc----------cCcchhcC--CCCeEEEEcCCcccHHHHHHHHHHHHhcCCcEEEEeccccccccccCCCc
Confidence 7776655332 13334333 577999999965421 2344444322 1345679
Q ss_pred ceEEeecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCC-cCCHHHHHHHH
Q 013836 310 GYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEG-KLERKEIERAI 388 (435)
Q Consensus 310 ~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i 388 (435)
+++..|+||.++|+++++ ||||||+|||.|||++|||+|++|...||++||.|+++ +|+|..+.. .++.+.|+++|
T Consensus 286 ~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~-~G~G~~l~~~~l~~~~l~~av 362 (406)
T COG1819 286 VIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE-LGAGIALPFEELTEERLRAAV 362 (406)
T ss_pred eEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH-cCCceecCcccCCHHHHHHHH
Confidence 999999999999999999 99999999999999999999999999999999999999 799999998 89999999999
Q ss_pred HHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 013836 389 LRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIM 433 (435)
Q Consensus 389 ~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 433 (435)
+++|+| +.|+++++++++.++. -++...+.+.+++.+.
T Consensus 363 ~~vL~~---~~~~~~~~~~~~~~~~----~~g~~~~a~~le~~~~ 400 (406)
T COG1819 363 NEVLAD---DSYRRAAERLAEEFKE----EDGPAKAADLLEEFAR 400 (406)
T ss_pred HHHhcC---HHHHHHHHHHHHHhhh----cccHHHHHHHHHHHHh
Confidence 999999 9999999999999995 4446666666666554
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=4.6e-38 Score=316.69 Aligned_cols=370 Identities=32% Similarity=0.445 Sum_probs=231.9
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC-CCC--ceEEEccC-------CCCCCCCCCCCCC
Q 013836 14 GRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCN-YPH--FEFCSFSD-------DGFSETYQPSKVA 83 (435)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~-~~~--~~~~~~~~-------~~~~~~~~~~~~~ 83 (435)
+.+++++++|++||++|+..||++|+++||+||++++......... ... +....... ++++..+....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 82 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDD-- 82 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHH--
Confidence 5788888999999999999999999999999999999654332211 111 11111110 12222200000
Q ss_pred CCHHHHHHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcC-CCeEEEcccchHHHHHHhhhhh
Q 013836 84 DDIPALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFK-LPTIVLLTDSIAASLSYAAFPI 162 (435)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~g-iP~v~~~~~~~~~~~~~~~~~~ 162 (435)
.........+...|...+++....+..... .++|++|+|.+..|...++.... |+...+.+.+........
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~---- 154 (496)
T KOG1192|consen 83 LDISESLLELNKTCEDLLRDPLEKLLLLKS----EKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGL---- 154 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHhhc----CCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCC----
Confidence 011111345556677777775555444322 44999999998777777777765 888887777766654332
Q ss_pred hhhcCCCCCCCC-------CCcccccCCCCCCcCCCCccccCC-----Cch-HHHHH-------HHHhhhcccccEEEec
Q 013836 163 LREKGYLPIQDF-------QLEAPVIEFPPLRVKDIPLLKTQD-----SNN-ADKVL-------SLRDSQIMASSGIIWN 222 (435)
Q Consensus 163 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~-----~~~-~~~~~-------~~~~~~~~~~~~~l~n 222 (435)
+.+..++|.... .+..+.+++. ...++...... ... ..... ........+++..++|
T Consensus 155 ~~~~~~~p~~~~~~~~~~~~~~~~~~n~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln 231 (496)
T KOG1192|consen 155 PSPLSYVPSPFSLSSGDDMSFPERVPNLI---KKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLN 231 (496)
T ss_pred cCcccccCcccCccccccCcHHHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEc
Confidence 222334443321 1111111111 00000000000 000 00000 1112344566677777
Q ss_pred chhhhchHHHHHhhhhccCCCCeeeeCCCccCCCCCCCCCCcccchhhhhhhcCCCC--cEEEEEeccccCc--------
Q 013836 223 SFEDLEQVELTAVHQQYYLSIPVFPIGPFHKCFPASSSSLLSQDQSSISWLDKQAPR--SVIYVSFGLARGA-------- 292 (435)
Q Consensus 223 s~~~le~~~~~~~~~~~~~~~pv~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~vV~vs~G~v~~~-------- 292 (435)
++..++.+ .++. .+++++|||++..... .+.. ...+|++..+.. ++||||||++..+
T Consensus 232 ~~~~~~~~----~~~~---~~~v~~IG~l~~~~~~----~~~~--~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~ 298 (496)
T KOG1192|consen 232 SNPLLDFE----PRPL---LPKVIPIGPLHVKDSK----QKSP--LPLEWLDILDESRHSVVYISFGSMVNSADLPEEQK 298 (496)
T ss_pred cCcccCCC----CCCC---CCCceEECcEEecCcc----cccc--ccHHHHHHHhhccCCeEEEECCcccccccCCHHHH
Confidence 77665541 1432 2449999999987432 1111 245677766554 8999999954321
Q ss_pred ----cccCCCch-hhH------------hhh----cCCceEEeecchhhh-hcCCccceEeeccCccchHHHHhhCCCee
Q 013836 293 ----EWLEPLPK-GIL------------EMV----DGRGYIVKWAPQQQV-LAHPAVGCFWTHSGWNSTLESICEGIPMI 350 (435)
Q Consensus 293 ----~~~~~l~~-~~~------------~~~----~~~~~~~~~~p~~~l-l~~~~v~~~I~HGG~gs~~eal~~GvP~v 350 (435)
.+++.++. .|+ +.. ++||...+|+||.++ |.|++++|||||||+||++|++++|||||
T Consensus 299 ~~l~~~l~~~~~~~FiW~~~~~~~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v 378 (496)
T KOG1192|consen 299 KELAKALESLQGVTFLWKYRPDDSIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMV 378 (496)
T ss_pred HHHHHHHHhCCCceEEEEecCCcchhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCcee
Confidence 12333311 111 222 236777799999998 59999999999999999999999999999
Q ss_pred eccCCCchhHHHHHHHhhhccEEEeCC-cCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Q 013836 351 CQPYFGDQMVNSRYVSHAWRVGLQLEG-KLERKEIERAILRVMVKADSQEMRERATYLNEKVDI 413 (435)
Q Consensus 351 ~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~ 413 (435)
++|+++||+.||++++++ |.+..+.+ .++.+.+.+++.+++++ ++|+++++++++.+++
T Consensus 379 ~~Plf~DQ~~Na~~i~~~-g~~~v~~~~~~~~~~~~~~~~~il~~---~~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 379 CVPLFGDQPLNARLLVRH-GGGGVLDKRDLVSEELLEAIKEILEN---EEYKEAAKRLSEILRD 438 (496)
T ss_pred cCCccccchhHHHHHHhC-CCEEEEehhhcCcHHHHHHHHHHHcC---hHHHHHHHHHHHHHHc
Confidence 999999999999999996 77777666 67666699999999999 8999999999998874
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.91 E-value=1.1e-22 Score=193.19 Aligned_cols=295 Identities=16% Similarity=0.162 Sum_probs=180.9
Q ss_pred CEEEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCHHHHHHHH
Q 013836 15 RRVILFPLPFQ-GHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSL 93 (435)
Q Consensus 15 ~~il~~~~~~~-GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (435)
|||+|...+.. ||+...++|+++| |||+|++++..... ...... +.+..++ ++.... .....+........
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~-~~~~~~-~~~~~~~--~~~~~~--~~~~~~~~~~~~~~ 72 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAP-EFLKPR-FPVREIP--GLGPIQ--ENGRLDRWKTVRNN 72 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcH-HHhccc-cCEEEcc--CceEec--cCCccchHHHHHHH
Confidence 89999888855 9999999999999 69999999996332 222212 4565666 221110 11122322222222
Q ss_pred H---HhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHHHHHHhhhhhhhhcCCCC
Q 013836 94 N---AKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAASLSYAAFPILREKGYLP 170 (435)
Q Consensus 94 ~---~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (435)
. ......++++.+.+.+ .+||+||+|. ...+..+|+..|||++.+............ .
T Consensus 73 ~~~~~~~~~~~~~~~~~l~~-------~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~~~~~-~---------- 133 (318)
T PF13528_consen 73 IRWLARLARRIRREIRWLRE-------FRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLHPNFW-L---------- 133 (318)
T ss_pred HHhhHHHHHHHHHHHHHHHh-------cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHcccccCC-c----------
Confidence 1 2233444455555554 6899999994 445678999999999988776443210000 0
Q ss_pred CCCCCCcccccCCCCCCcCCCCccccCCCchHHHHHHHHhhh--cccccEEEecchhhhchHHHHHhhhhccCCCCeeee
Q 013836 171 IQDFQLEAPVIEFPPLRVKDIPLLKTQDSNNADKVLSLRDSQ--IMASSGIIWNSFEDLEQVELTAVHQQYYLSIPVFPI 248 (435)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ns~~~le~~~~~~~~~~~~~~~pv~~v 248 (435)
.........+.+.... ...++..+.-++. .. . ... ..+.++
T Consensus 134 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-~-----~~~----~~~~~~ 176 (318)
T PF13528_consen 134 --------------------------PWDQDFGRLIERYIDRYHFPPADRRLALSFY-PP-L-----PPF----FRVPFV 176 (318)
T ss_pred --------------------------chhhhHHHHHHHhhhhccCCcccceecCCcc-cc-c-----ccc----cccccc
Confidence 0001111222222221 2333434433332 11 0 110 226667
Q ss_pred CCCccCCCCCCCCCCcccchhhhhhhcCCCCcEEEEEeccccCc---cccCCCch-hh-------HhhhcCCceEEeec-
Q 013836 249 GPFHKCFPASSSSLLSQDQSSISWLDKQAPRSVIYVSFGLARGA---EWLEPLPK-GI-------LEMVDGRGYIVKWA- 316 (435)
Q Consensus 249 Gp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~G~v~~~---~~~~~l~~-~~-------~~~~~~~~~~~~~~- 316 (435)
||+...... .. -. ..++.|+|+||..... +.+..++. .+ .+...+|+.+.+|.
T Consensus 177 ~p~~~~~~~------~~-------~~--~~~~~iLv~~gg~~~~~~~~~l~~~~~~~~~v~g~~~~~~~~~ni~~~~~~~ 241 (318)
T PF13528_consen 177 GPIIRPEIR------EL-------PP--EDEPKILVYFGGGGPGDLIEALKALPDYQFIVFGPNAADPRPGNIHVRPFST 241 (318)
T ss_pred Cchhccccc------cc-------CC--CCCCEEEEEeCCCcHHHHHHHHHhCCCCeEEEEcCCcccccCCCEEEeecCh
Confidence 877654321 00 01 1345788998821110 11111221 11 11225788888876
Q ss_pred -chhhhhcCCccceEeeccCccchHHHHhhCCCeeeccC--CCchhHHHHHHHhhhccEEEeCC-cCCHHHHHHHHHHH
Q 013836 317 -PQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPY--FGDQMVNSRYVSHAWRVGLQLEG-KLERKEIERAILRV 391 (435)
Q Consensus 317 -p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~--~~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~~v 391 (435)
...++|+.+++ +|+|||+||++|++++|+|+|++|. ..||..||+++++ +|+|..++. +++++.|.++|+++
T Consensus 242 ~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~-~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 242 PDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEE-LGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred HHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH-CCCeEEcccccCCHHHHHHHHhcC
Confidence 45589999999 9999999999999999999999999 7899999999999 799999987 89999999999764
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.91 E-value=5.9e-22 Score=189.18 Aligned_cols=302 Identities=14% Similarity=0.131 Sum_probs=176.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCceEEEccCCCCCCCCCCCCCCCCHHHHHHHH
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPN-SCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSL 93 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (435)
.||++...|+.||++|.++||++|.++||+|+|+++...... .....|+.+..++..++. ....+ ..+...
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~-------~~~~~-~~~~~~ 73 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLR-------RYFDL-KNIKDP 73 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcC-------CCchH-HHHHHH
Confidence 367888888889999999999999999999999998643322 223357888777711111 11122 222222
Q ss_pred HHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCch--hhHHHHHHHcCCCeEEEcccchHHHHHHhhhhhhhhcCCCCC
Q 013836 94 NAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAW--FIALSVANDFKLPTIVLLTDSIAASLSYAAFPILREKGYLPI 171 (435)
Q Consensus 94 ~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (435)
...... +...+..+++ .+||+|++..-+ ..+..+|..+++|++............
T Consensus 74 ~~~~~~-~~~~~~i~~~-------~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~g~~n--------------- 130 (352)
T PRK12446 74 FLVMKG-VMDAYVRIRK-------LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTPGLAN--------------- 130 (352)
T ss_pred HHHHHH-HHHHHHHHHh-------cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCccHHH---------------
Confidence 222211 2222333444 789999987633 446789999999998754331111110
Q ss_pred CCCCCcccccCCCCCCcCCCCccccCCCchHHHHHHHHhhhcccccEEEecchhhhchHHHHHhhhhccCC-CCeeeeCC
Q 013836 172 QDFQLEAPVIEFPPLRVKDIPLLKTQDSNNADKVLSLRDSQIMASSGIIWNSFEDLEQVELTAVHQQYYLS-IPVFPIGP 250 (435)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~~~~-~pv~~vGp 250 (435)
+.+ .+.++.+++ ++++ . ... ++ ..++++|+
T Consensus 131 --------------------------------r~~------~~~a~~v~~-~f~~---~-----~~~--~~~~k~~~tG~ 161 (352)
T PRK12446 131 --------------------------------KIA------LRFASKIFV-TFEE---A-----AKH--LPKEKVIYTGS 161 (352)
T ss_pred --------------------------------HHH------HHhhCEEEE-Eccc---h-----hhh--CCCCCeEEECC
Confidence 001 111222222 2211 1 111 22 22667774
Q ss_pred CccCCCCCCCCCCcccchhhhhhhcCCCCcEEEEEeccccCc-------cccCCCch-----------hhHhhh--cCCc
Q 013836 251 FHKCFPASSSSLLSQDQSSISWLDKQAPRSVIYVSFGLARGA-------EWLEPLPK-----------GILEMV--DGRG 310 (435)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~G~v~~~-------~~~~~l~~-----------~~~~~~--~~~~ 310 (435)
-....-. . .... +..+.+.-.+.+++|+|.-|+.-.. +....+.. ++.+.. ..+.
T Consensus 162 Pvr~~~~---~-~~~~-~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~~~~vv~~~G~~~~~~~~~~~~~~ 236 (352)
T PRK12446 162 PVREEVL---K-GNRE-KGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLLKYQIVHLCGKGNLDDSLQNKEGY 236 (352)
T ss_pred cCCcccc---c-ccch-HHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhccCcEEEEEeCCchHHHHHhhcCCc
Confidence 3322110 0 0010 1111122122455677766611000 00000000 011100 1244
Q ss_pred eEEeec-c-hhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCC-----CchhHHHHHHHhhhccEEEeCC-cCCHH
Q 013836 311 YIVKWA-P-QQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYF-----GDQMVNSRYVSHAWRVGLQLEG-KLERK 382 (435)
Q Consensus 311 ~~~~~~-p-~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~-----~DQ~~na~~v~~~~G~g~~~~~-~~~~~ 382 (435)
.+.+|+ + -.++|+++++ +|||||.+|+.|++++|+|+|++|+. .||..||+.+++ .|+|..+.. .++++
T Consensus 237 ~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~-~g~~~~l~~~~~~~~ 313 (352)
T PRK12446 237 RQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFER-QGYASVLYEEDVTVN 313 (352)
T ss_pred EEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHH-CCCEEEcchhcCCHH
Confidence 556887 4 4489999999 99999999999999999999999984 589999999999 699999987 89999
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHH
Q 013836 383 EIERAILRVMVKADSQEMRERATY 406 (435)
Q Consensus 383 ~l~~~i~~vl~~~~~~~~~~~a~~ 406 (435)
.|.+++.++++|. +.|++++++
T Consensus 314 ~l~~~l~~ll~~~--~~~~~~~~~ 335 (352)
T PRK12446 314 SLIKHVEELSHNN--EKYKTALKK 335 (352)
T ss_pred HHHHHHHHHHcCH--HHHHHHHHH
Confidence 9999999999872 355544433
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.88 E-value=5e-21 Score=181.52 Aligned_cols=87 Identities=22% Similarity=0.336 Sum_probs=74.1
Q ss_pred hcCCceEEeecc--hhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCC--chhHHHHHHHhhhccEEEeCC-cCC
Q 013836 306 VDGRGYIVKWAP--QQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFG--DQMVNSRYVSHAWRVGLQLEG-KLE 380 (435)
Q Consensus 306 ~~~~~~~~~~~p--~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~g~~~~~-~~~ 380 (435)
.++|+.+.+|.| ..++|+.+++ +|||||.+|++|++++|+|++++|... ||..||+.+++ .|+|+.++. ++
T Consensus 227 ~~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g~~~~l~~~~~- 302 (321)
T TIGR00661 227 YNENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LGCGIALEYKEL- 302 (321)
T ss_pred cCCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CCCEEEcChhhH-
Confidence 457888899997 3477888888 999999999999999999999999854 89999999999 699999987 44
Q ss_pred HHHHHHHHHHHHcCCchHHHH
Q 013836 381 RKEIERAILRVMVKADSQEMR 401 (435)
Q Consensus 381 ~~~l~~~i~~vl~~~~~~~~~ 401 (435)
++.+++.++++| +.|+
T Consensus 303 --~~~~~~~~~~~~---~~~~ 318 (321)
T TIGR00661 303 --RLLEAILDIRNM---KRYK 318 (321)
T ss_pred --HHHHHHHhcccc---cccc
Confidence 677777788888 5554
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=1.4e-18 Score=164.12 Aligned_cols=82 Identities=22% Similarity=0.395 Sum_probs=75.7
Q ss_pred ceEEeecchh-hhhcCCccceEeeccCccchHHHHhhCCCeeeccC-C---CchhHHHHHHHhhhccEEEeCC-cCCHHH
Q 013836 310 GYIVKWAPQQ-QVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPY-F---GDQMVNSRYVSHAWRVGLQLEG-KLERKE 383 (435)
Q Consensus 310 ~~~~~~~p~~-~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~-~---~DQ~~na~~v~~~~G~g~~~~~-~~~~~~ 383 (435)
+.+.+|+.+. .+++.+++ +||++|.+|+.|++++|+|+|.+|. . .||..||..++++ |.|..++. ++|++.
T Consensus 237 ~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa~~i~~~~lt~~~ 313 (357)
T COG0707 237 VRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAALVIRQSELTPEK 313 (357)
T ss_pred EEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCEEEeccccCCHHH
Confidence 6667888866 89999999 9999999999999999999999996 3 4899999999995 99999998 899999
Q ss_pred HHHHHHHHHcC
Q 013836 384 IERAILRVMVK 394 (435)
Q Consensus 384 l~~~i~~vl~~ 394 (435)
|.+.|.+++++
T Consensus 314 l~~~i~~l~~~ 324 (357)
T COG0707 314 LAELILRLLSN 324 (357)
T ss_pred HHHHHHHHhcC
Confidence 99999999997
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.79 E-value=1.2e-16 Score=154.30 Aligned_cols=115 Identities=14% Similarity=0.179 Sum_probs=96.4
Q ss_pred CceEEeecc-hhhhhcCCccceEeeccCccchHHHHhhCCCeeeccC----CCchhHHHHHHHhhhccEEEeCC-cCCHH
Q 013836 309 RGYIVKWAP-QQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPY----FGDQMVNSRYVSHAWRVGLQLEG-KLERK 382 (435)
Q Consensus 309 ~~~~~~~~p-~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~----~~DQ~~na~~v~~~~G~g~~~~~-~~~~~ 382 (435)
++.+.+|+. ..++++.+++ +|+|+|.++++||+++|+|+|++|. ..||..|+..+.+ .|.|..+.. .++++
T Consensus 236 ~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~-~~~g~~~~~~~~~~~ 312 (357)
T PRK00726 236 NAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVD-AGAALLIPQSDLTPE 312 (357)
T ss_pred cEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHH-CCCEEEEEcccCCHH
Confidence 467779984 4589999999 9999999999999999999999997 4689999999999 599999986 67899
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 013836 383 EIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIM 433 (435)
Q Consensus 383 ~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 433 (435)
.|.++|.++++| ++++++..+-+.++. +..+..+.++.+++.+.
T Consensus 313 ~l~~~i~~ll~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 313 KLAEKLLELLSD---PERLEAMAEAARALG----KPDAAERLADLIEELAR 356 (357)
T ss_pred HHHHHHHHHHcC---HHHHHHHHHHHHhcC----CcCHHHHHHHHHHHHhh
Confidence 999999999999 788777666665554 56667777777766654
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.74 E-value=1.5e-15 Score=146.28 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=81.3
Q ss_pred cCCceEEeec-chhhhhcCCccceEeeccCccchHHHHhhCCCeeeccC----CCchhHHHHHHHhhhccEEEeCC-cCC
Q 013836 307 DGRGYIVKWA-PQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPY----FGDQMVNSRYVSHAWRVGLQLEG-KLE 380 (435)
Q Consensus 307 ~~~~~~~~~~-p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~----~~DQ~~na~~v~~~~G~g~~~~~-~~~ 380 (435)
.+|+.+.+|+ ...++|..+++ +|+++|.+|+.||+++|+|+|++|. ..+|..|+..+.+ .|.|..++. ..+
T Consensus 234 ~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~-~g~g~~v~~~~~~ 310 (350)
T cd03785 234 GVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVK-AGAAVLIPQEELT 310 (350)
T ss_pred CCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHh-CCCEEEEecCCCC
Confidence 4688888998 44589999999 9999999999999999999999986 4679999999999 599999986 479
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 013836 381 RKEIERAILRVMVKADSQEMRERATYLN 408 (435)
Q Consensus 381 ~~~l~~~i~~vl~~~~~~~~~~~a~~l~ 408 (435)
.++|.++|.++++| ++.+++...-+
T Consensus 311 ~~~l~~~i~~ll~~---~~~~~~~~~~~ 335 (350)
T cd03785 311 PERLAAALLELLSD---PERLKAMAEAA 335 (350)
T ss_pred HHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence 99999999999998 66555444433
No 34
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.64 E-value=5.2e-14 Score=127.04 Aligned_cols=311 Identities=15% Similarity=0.143 Sum_probs=183.9
Q ss_pred CCCEEEEEcCCCc--cChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceEEEccC-CCCCCC-CCCCCCCCCH
Q 013836 13 NGRRVILFPLPFQ--GHINPMLQLGSILYSE--GFSITIIHTTLNSPNSCNYPHFEFCSFSD-DGFSET-YQPSKVADDI 86 (435)
Q Consensus 13 ~~~~il~~~~~~~--GHv~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~ 86 (435)
+++||+|.+.-+. ||+.....+|+.|++. |.+|++++..+....+....|++|+.+|. .....+ +.......+.
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~~~l 87 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLDGDL 87 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceEecCceEecCCCceeeeecCCCH
Confidence 4569999998766 9999999999999998 99999999976666665557999999993 111111 1101111221
Q ss_pred HHHHHHHHHhcchHHHHH-HHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHHHHHHhhhhhhhh
Q 013836 87 PALLLSLNAKCIVPFRDC-LANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAASLSYAAFPILRE 165 (435)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~-l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 165 (435)
+-+..++ +++ +..... .+||++|+|.+-+... .+. .++..+...
T Consensus 88 -~e~~~~R-------s~lil~t~~~-------fkPDi~IVd~~P~Glr--~EL-------------~ptL~yl~~----- 132 (400)
T COG4671 88 -EETKKLR-------SQLILSTAET-------FKPDIFIVDKFPFGLR--FEL-------------LPTLEYLKT----- 132 (400)
T ss_pred -HHHHHHH-------HHHHHHHHHh-------cCCCEEEEeccccchh--hhh-------------hHHHHHHhh-----
Confidence 1122221 222 344433 7899999997655411 110 011111100
Q ss_pred cCCCCCCCCCCcccccCCCCCCcCCCCccccC-CCchHHHHHHHHhhhcccccEEEecchhhhchHHHHHh-hhhccCCC
Q 013836 166 KGYLPIQDFQLEAPVIEFPPLRVKDIPLLKTQ-DSNNADKVLSLRDSQIMASSGIIWNSFEDLEQVELTAV-HQQYYLSI 243 (435)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~~-~~~~~~~~ 243 (435)
.+. .+.+-.+++...... ......+...+.. -+..|.+++...++|-.+...+. .+. ...
T Consensus 133 ~~t--------------~~vL~lr~i~D~p~~~~~~w~~~~~~~~I--~r~yD~V~v~GdP~f~d~~~~~~~~~~--i~~ 194 (400)
T COG4671 133 TGT--------------RLVLGLRSIRDIPQELEADWRRAETVRLI--NRFYDLVLVYGDPDFYDPLTEFPFAPA--IRA 194 (400)
T ss_pred cCC--------------cceeehHhhhhchhhhccchhhhHHHHHH--HHhheEEEEecCccccChhhcCCccHh--hhh
Confidence 000 000111111100000 0111111111111 23446677766655432211100 011 112
Q ss_pred CeeeeCCCccCCCCCCCCCCcccchhhhhhhcCCCCcEEEEEec---------------------------cccCccccC
Q 013836 244 PVFPIGPFHKCFPASSSSLLSQDQSSISWLDKQAPRSVIYVSFG---------------------------LARGAEWLE 296 (435)
Q Consensus 244 pv~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~G---------------------------~v~~~~~~~ 296 (435)
.+.++|.+..+.+. ...+.. .. +.+.-|+||-| ++.++.
T Consensus 195 k~~ytG~vq~~~~~---~~~p~~-------~~-pE~~~Ilvs~GGG~dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~--- 260 (400)
T COG4671 195 KMRYTGFVQRSLPH---LPLPPH-------EA-PEGFDILVSVGGGADGAELIETALAAAQLLAGLNHKWLIVTGPF--- 260 (400)
T ss_pred heeEeEEeeccCcC---CCCCCc-------CC-CccceEEEecCCChhhHHHHHHHHHHhhhCCCCCcceEEEeCCC---
Confidence 28999998332221 112211 11 23457999999 223333
Q ss_pred CCchhhHh----hhc--CCceEEeecchh-hhhcCCccceEeeccCccchHHHHhhCCCeeeccC---CCchhHHHHHHH
Q 013836 297 PLPKGILE----MVD--GRGYIVKWAPQQ-QVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPY---FGDQMVNSRYVS 366 (435)
Q Consensus 297 ~l~~~~~~----~~~--~~~~~~~~~p~~-~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~---~~DQ~~na~~v~ 366 (435)
||+...+ ..+ +++.+..|-.+- .++..++. +|+-||+||++|-|.+|+|.+++|. ..||-.-|.|++
T Consensus 261 -MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~ 337 (400)
T COG4671 261 -MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLE 337 (400)
T ss_pred -CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHH
Confidence 5654333 334 567778887655 88888988 9999999999999999999999997 448999999999
Q ss_pred hhhccEEEeCC-cCCHHHHHHHHHHHHcC
Q 013836 367 HAWRVGLQLEG-KLERKEIERAILRVMVK 394 (435)
Q Consensus 367 ~~~G~g~~~~~-~~~~~~l~~~i~~vl~~ 394 (435)
+ ||+.-.+.. .+++..|+++|...+..
T Consensus 338 ~-LGL~dvL~pe~lt~~~La~al~~~l~~ 365 (400)
T COG4671 338 E-LGLVDVLLPENLTPQNLADALKAALAR 365 (400)
T ss_pred h-cCcceeeCcccCChHHHHHHHHhcccC
Confidence 9 999999888 89999999999999984
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.63 E-value=1.6e-13 Score=131.87 Aligned_cols=86 Identities=20% Similarity=0.331 Sum_probs=71.9
Q ss_pred chhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCC---CchhHHHHHHHhhhccEEEeCC-cCCHHHHHHHHHHHH
Q 013836 317 PQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYF---GDQMVNSRYVSHAWRVGLQLEG-KLERKEIERAILRVM 392 (435)
Q Consensus 317 p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~---~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~~vl 392 (435)
...++|+.+++ +|+++|.+|+.||+++|+|+|++|.. .+|..|+..+.+ .|.|..++. ..++++|.+++.+++
T Consensus 243 ~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~-~~~G~~~~~~~~~~~~l~~~i~~ll 319 (348)
T TIGR01133 243 NMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED-LGAGLVIRQKELLPEKLLEALLKLL 319 (348)
T ss_pred CHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH-CCCEEEEecccCCHHHHHHHHHHHH
Confidence 44589999999 99999988999999999999999863 478889999999 599998876 568999999999999
Q ss_pred cCCchHHHHHHHHHHH
Q 013836 393 VKADSQEMRERATYLN 408 (435)
Q Consensus 393 ~~~~~~~~~~~a~~l~ 408 (435)
+| ++.+++..+-+
T Consensus 320 ~~---~~~~~~~~~~~ 332 (348)
T TIGR01133 320 LD---PANLEAMAEAA 332 (348)
T ss_pred cC---HHHHHHHHHHH
Confidence 98 66655444433
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.60 E-value=9.9e-14 Score=134.51 Aligned_cols=106 Identities=12% Similarity=0.092 Sum_probs=83.4
Q ss_pred hhhhhcCCccceEeeccCccchHHHHhhCCCeeec----cCCC---------chhHHHHHHHhhhccEEEeCC-cCCHHH
Q 013836 318 QQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQ----PYFG---------DQMVNSRYVSHAWRVGLQLEG-KLERKE 383 (435)
Q Consensus 318 ~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~----P~~~---------DQ~~na~~v~~~~G~g~~~~~-~~~~~~ 383 (435)
..++++.+++ +|+-.|..|+ |++++|+|+|++ |+.. .|..|+..+.++ ++...+.. ..|++.
T Consensus 261 ~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~-~~~pel~q~~~~~~~ 336 (385)
T TIGR00215 261 ARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANR-LLVPELLQEECTPHP 336 (385)
T ss_pred HHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCC-ccchhhcCCCCCHHH
Confidence 3478999999 9999999988 999999999999 8632 377899999995 99988776 899999
Q ss_pred HHHHHHHHHcCCchH----HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 013836 384 IERAILRVMVKADSQ----EMRERATYLNEKVDICLQQGGSSYQSLGRLTD 430 (435)
Q Consensus 384 l~~~i~~vl~~~~~~----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 430 (435)
|.+.+.++|+| + +++++.++--+++++-++++|.+.++.+.+.+
T Consensus 337 l~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 337 LAIALLLLLEN---GLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVLE 384 (385)
T ss_pred HHHHHHHHhcC---CcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 99999999999 5 44444444444444444477888888776654
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.59 E-value=1.2e-13 Score=134.58 Aligned_cols=113 Identities=10% Similarity=0.085 Sum_probs=86.8
Q ss_pred cCCceEEeecchh-hhhcCCccceEeeccCccchHHHHhhCCCeeec-cCCCchhHHHHHHHhhhccEEEeCCcCCHHHH
Q 013836 307 DGRGYIVKWAPQQ-QVLAHPAVGCFWTHSGWNSTLESICEGIPMICQ-PYFGDQMVNSRYVSHAWRVGLQLEGKLERKEI 384 (435)
Q Consensus 307 ~~~~~~~~~~p~~-~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l 384 (435)
++|+.+.+|+++. +++..+++ +|+.+|..|+.||+++|+|+|+. |..+.+..|+..+.+ .|+++.. -+.++|
T Consensus 255 ~~~v~~~g~~~~~~~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~-~G~~~~~---~~~~~l 328 (380)
T PRK13609 255 PDALKVFGYVENIDELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER-KGAAVVI---RDDEEV 328 (380)
T ss_pred CCcEEEEechhhHHHHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh-CCcEEEE---CCHHHH
Confidence 4688889999875 89999999 99999988999999999999985 677778899988888 4998865 367899
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 013836 385 ERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHI 432 (435)
Q Consensus 385 ~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 432 (435)
.++|.++++| ++.+++..+-+.++. ...+..+.++.+++.+
T Consensus 329 ~~~i~~ll~~---~~~~~~m~~~~~~~~----~~~s~~~i~~~i~~~~ 369 (380)
T PRK13609 329 FAKTEALLQD---DMKLLQMKEAMKSLY----LPEPADHIVDDILAEN 369 (380)
T ss_pred HHHHHHHHCC---HHHHHHHHHHHHHhC----CCchHHHHHHHHHHhh
Confidence 9999999998 665544433333332 3345666666666554
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.48 E-value=1.3e-12 Score=120.94 Aligned_cols=55 Identities=15% Similarity=0.179 Sum_probs=50.9
Q ss_pred cCCceEEeecchh-hhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHHHH
Q 013836 307 DGRGYIVKWAPQQ-QVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRY 364 (435)
Q Consensus 307 ~~~~~~~~~~p~~-~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~ 364 (435)
..|+.+..++++. ++|+.+++ +|++|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 223 ~~~i~~~~~~~~m~~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 223 YPNIILFIDVENMAELMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred CCCEEEEeCHHHHHHHHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 4578888999876 99999999 999999 9999999999999999999999999975
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.44 E-value=1.3e-11 Score=120.21 Aligned_cols=107 Identities=12% Similarity=0.103 Sum_probs=71.1
Q ss_pred hhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchh--------HH-----HHHHHhhhccEEEeCC-cCCHHHH
Q 013836 319 QQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQM--------VN-----SRYVSHAWRVGLQLEG-KLERKEI 384 (435)
Q Consensus 319 ~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~--------~n-----a~~v~~~~G~g~~~~~-~~~~~~l 384 (435)
..+++.+++ +|+-+|.+++ |++++|+|+|++|...--+ .| +..+.+. +++..+.. ..+++.|
T Consensus 256 ~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~l 331 (380)
T PRK00025 256 REAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGR-ELVPELLQEEATPEKL 331 (380)
T ss_pred HHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCC-CcchhhcCCCCCHHHH
Confidence 478899999 9999998887 9999999999996432211 11 2233332 33333333 6899999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 013836 385 ERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIM 433 (435)
Q Consensus 385 ~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 433 (435)
.+++.++++| ++.+++..+-.+.+.+.. ..++..+.++.+.+.+.
T Consensus 332 ~~~i~~ll~~---~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 332 ARALLPLLAD---GARRQALLEGFTELHQQL-RCGADERAAQAVLELLK 376 (380)
T ss_pred HHHHHHHhcC---HHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhh
Confidence 9999999999 665554444443333333 34566777777766554
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.43 E-value=1.4e-11 Score=120.18 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=87.7
Q ss_pred cCCceEEeecchh-hhhcCCccceEeeccCccchHHHHhhCCCeeec-cCCCchhHHHHHHHhhhccEEEeCCcCCHHHH
Q 013836 307 DGRGYIVKWAPQQ-QVLAHPAVGCFWTHSGWNSTLESICEGIPMICQ-PYFGDQMVNSRYVSHAWRVGLQLEGKLERKEI 384 (435)
Q Consensus 307 ~~~~~~~~~~p~~-~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l 384 (435)
.+++.+.+|+++. +++..+++ +|+..|..|+.||+++|+|+|++ |..++|..|+..+.+ .|+|+... +.+++
T Consensus 255 ~~~v~~~G~~~~~~~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~-~G~g~~~~---~~~~l 328 (391)
T PRK13608 255 NENVLILGYTKHMNEWMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEE-KGFGKIAD---TPEEA 328 (391)
T ss_pred CCCeEEEeccchHHHHHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHh-CCcEEEeC---CHHHH
Confidence 3578888999655 79999999 99998888999999999999998 777777899999999 49998754 68899
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 013836 385 ERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIMS 434 (435)
Q Consensus 385 ~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 434 (435)
.++|.++++| ++.+++.++-+.+.. ...+..+.++.+++.+.+
T Consensus 329 ~~~i~~ll~~---~~~~~~m~~~~~~~~----~~~s~~~i~~~l~~l~~~ 371 (391)
T PRK13608 329 IKIVASLTNG---NEQLTNMISTMEQDK----IKYATQTICRDLLDLIGH 371 (391)
T ss_pred HHHHHHHhcC---HHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHhhh
Confidence 9999999998 443333222222222 345567777777766643
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.36 E-value=2.5e-13 Score=116.12 Aligned_cols=84 Identities=19% Similarity=0.314 Sum_probs=73.3
Q ss_pred CCceEEeecc-hhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCC----chhHHHHHHHhhhccEEEeCC-cCCH
Q 013836 308 GRGYIVKWAP-QQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFG----DQMVNSRYVSHAWRVGLQLEG-KLER 381 (435)
Q Consensus 308 ~~~~~~~~~p-~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~----DQ~~na~~v~~~~G~g~~~~~-~~~~ 381 (435)
.|+.+.+|++ ..+++..+++ +|||||.||++|++++|+|+|++|... +|..||..+++ .|+|..+.. ..+.
T Consensus 55 ~~v~~~~~~~~m~~~m~~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~-~g~~~~~~~~~~~~ 131 (167)
T PF04101_consen 55 PNVKVFGFVDNMAELMAAADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK-KGAAIMLDESELNP 131 (167)
T ss_dssp CCCEEECSSSSHHHHHHHHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH-CCCCCCSECCC-SC
T ss_pred CcEEEEechhhHHHHHHHcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH-cCCccccCcccCCH
Confidence 6788999999 7799999999 999999999999999999999999988 99999999999 599999887 7789
Q ss_pred HHHHHHHHHHHcC
Q 013836 382 KEIERAILRVMVK 394 (435)
Q Consensus 382 ~~l~~~i~~vl~~ 394 (435)
+.|.++|..++.+
T Consensus 132 ~~L~~~i~~l~~~ 144 (167)
T PF04101_consen 132 EELAEAIEELLSD 144 (167)
T ss_dssp CCHHHHHHCHCCC
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999998
No 42
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.34 E-value=6.8e-14 Score=115.82 Aligned_cols=130 Identities=18% Similarity=0.112 Sum_probs=78.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCHHHHHHHHHHh
Q 013836 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSLNAK 96 (435)
Q Consensus 17 il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (435)
|+|.+.|+.||++|+++|+++|++|||+|++++++...... +..|++|..++ .+ ... .........+....+.
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v-~~~Gl~~~~~~-~~-~~~----~~~~~~~~~~~~~~~~ 73 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERV-EAAGLEFVPIP-GD-SRL----PRSLEPLANLRRLARL 73 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHH-HHTT-EEEESS-SC-GGG----GHHHHHHHHHHCHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecc-cccCceEEEec-CC-cCc----CcccchhhhhhhHHHH
Confidence 78999999999999999999999999999999995433333 45799999999 33 000 0000111111111111
Q ss_pred --cchHHHHHHHHHHhcc--CCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHH
Q 013836 97 --CIVPFRDCLANKLMSN--AQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAA 153 (435)
Q Consensus 97 --~~~~l~~~l~~l~~~~--~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~ 153 (435)
....+...+....... ........|+++.+.....+..+||++|||++.....|.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~~ 134 (139)
T PF03033_consen 74 IRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWFA 134 (139)
T ss_dssp HHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGGS
T ss_pred hhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcCc
Confidence 0011111222211100 00001357888888888889999999999999988877664
No 43
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.25 E-value=2.3e-08 Score=96.05 Aligned_cols=111 Identities=18% Similarity=0.173 Sum_probs=79.2
Q ss_pred hcCCceEEeecchhh---hhcCCccceEeeccC----ccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCc
Q 013836 306 VDGRGYIVKWAPQQQ---VLAHPAVGCFWTHSG----WNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGK 378 (435)
Q Consensus 306 ~~~~~~~~~~~p~~~---ll~~~~v~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~ 378 (435)
..+|+.+.+|+++.+ ++..+++ +|+.+. .+++.||+++|+|+|+.+... +...+.+ .+.|.....
T Consensus 245 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~-~~~g~~~~~- 316 (364)
T cd03814 245 RYPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTD-GENGLLVEP- 316 (364)
T ss_pred cCCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcC-CcceEEcCC-
Confidence 346788889998764 7888998 886654 468999999999999987654 4455666 488988876
Q ss_pred CCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 013836 379 LERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDH 431 (435)
Q Consensus 379 ~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 431 (435)
-+.+++.+++.+++.| ++.+++..+-+.+.. +.-+.....+.+++.
T Consensus 317 ~~~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 362 (364)
T cd03814 317 GDAEAFAAALAALLAD---PELRRRMAARARAEA----ERRSWEAFLDNLLEA 362 (364)
T ss_pred CCHHHHHHHHHHHHcC---HHHHHHHHHHHHHHH----hhcCHHHHHHHHHHh
Confidence 7888899999999998 555544444333332 224455555555544
No 44
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.24 E-value=2.7e-08 Score=99.47 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=59.5
Q ss_pred CCceEEeecchh---hhhcCCccceEeeccC----ccchHHHHhhCCCeeeccCCCchhHHHHHHHh---hhccEEEeCC
Q 013836 308 GRGYIVKWAPQQ---QVLAHPAVGCFWTHSG----WNSTLESICEGIPMICQPYFGDQMVNSRYVSH---AWRVGLQLEG 377 (435)
Q Consensus 308 ~~~~~~~~~p~~---~ll~~~~v~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~---~~G~g~~~~~ 377 (435)
.++.+.+++++. +++..+++ +|.-.. -.++.||+++|+|+|+....+ ....+.+ . +.|...+.
T Consensus 312 ~~V~f~G~v~~~ev~~~~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~-~~G~lv~~ 384 (465)
T PLN02871 312 TPTVFTGMLQGDELSQAYASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEG-KTGFLYTP 384 (465)
T ss_pred CCeEEeccCCHHHHHHHHHHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCC-CceEEeCC
Confidence 578888999865 47788998 885332 346889999999999876532 2223433 4 78888876
Q ss_pred cCCHHHHHHHHHHHHcC
Q 013836 378 KLERKEIERAILRVMVK 394 (435)
Q Consensus 378 ~~~~~~l~~~i~~vl~~ 394 (435)
-+.+++.++|.++++|
T Consensus 385 -~d~~~la~~i~~ll~~ 400 (465)
T PLN02871 385 -GDVDDCVEKLETLLAD 400 (465)
T ss_pred -CCHHHHHHHHHHHHhC
Confidence 7889999999999998
No 45
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.21 E-value=2.1e-09 Score=104.72 Aligned_cols=113 Identities=17% Similarity=0.177 Sum_probs=84.4
Q ss_pred CCceEEeecchh-hhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchh-HHHHHHHhhhccEEEeCCcCCHHHHH
Q 013836 308 GRGYIVKWAPQQ-QVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQM-VNSRYVSHAWRVGLQLEGKLERKEIE 385 (435)
Q Consensus 308 ~~~~~~~~~p~~-~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~-~na~~v~~~~G~g~~~~~~~~~~~l~ 385 (435)
.++.+.+|+++. +++..+++ +|+.+|-+|+.||+++|+|+|+.+....|. .|+..+.+. |.|+.+ -+++.|.
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~---~~~~~la 338 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS---ESPKEIA 338 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec---CCHHHHH
Confidence 467788999865 89999999 999999999999999999999998766675 689889884 999864 5789999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 013836 386 RAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHI 432 (435)
Q Consensus 386 ~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 432 (435)
++|.+++.|. ++.+++..+.+.+.. ...++.+.++.+.+.+
T Consensus 339 ~~i~~ll~~~--~~~~~~m~~~~~~~~----~~~a~~~i~~~l~~~~ 379 (382)
T PLN02605 339 RIVAEWFGDK--SDELEAMSENALKLA----RPEAVFDIVHDLHELV 379 (382)
T ss_pred HHHHHHHcCC--HHHHHHHHHHHHHhc----CCchHHHHHHHHHHHh
Confidence 9999999862 233333222222222 3455566666666554
No 46
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.14 E-value=5.7e-09 Score=101.52 Aligned_cols=109 Identities=14% Similarity=0.151 Sum_probs=80.3
Q ss_pred ceEEeecch-hhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhh----ccEEEeCCcCCHHHH
Q 013836 310 GYIVKWAPQ-QQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAW----RVGLQLEGKLERKEI 384 (435)
Q Consensus 310 ~~~~~~~p~-~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~----G~g~~~~~~~~~~~l 384 (435)
+.+..+..+ .++++.+++ +|+-.|..| .|+...|+|+|++|.-..|. |+...++ . |.++.+.. .+.+.|
T Consensus 281 ~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~-~~~l~g~~~~l~~-~~~~~l 354 (396)
T TIGR03492 281 LEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEA-QSRLLGGSVFLAS-KNPEQA 354 (396)
T ss_pred eEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHh-hHhhcCCEEecCC-CCHHHH
Confidence 444455443 489999999 999999766 99999999999999877786 9876665 3 77777765 666999
Q ss_pred HHHHHHHHcCCchHHHHHHHH-HHHHHHHHHHhcCCChHHHHHHHHHH
Q 013836 385 ERAILRVMVKADSQEMRERAT-YLNEKVDICLQQGGSSYQSLGRLTDH 431 (435)
Q Consensus 385 ~~~i~~vl~~~~~~~~~~~a~-~l~~~~~~~~~~~g~~~~~~~~~~~~ 431 (435)
.+++.++++| ++.+++.. ..+.++. .++++.+.++.+.+.
T Consensus 355 ~~~l~~ll~d---~~~~~~~~~~~~~~lg----~~~a~~~ia~~i~~~ 395 (396)
T TIGR03492 355 AQVVRQLLAD---PELLERCRRNGQERMG----PPGASARIAESILKQ 395 (396)
T ss_pred HHHHHHHHcC---HHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHh
Confidence 9999999998 66655444 3333443 556666666666553
No 47
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.10 E-value=8.4e-08 Score=92.91 Aligned_cols=113 Identities=13% Similarity=0.113 Sum_probs=75.6
Q ss_pred cCCceEEeecchh-hhhcCCccceEee----ccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCH
Q 013836 307 DGRGYIVKWAPQQ-QVLAHPAVGCFWT----HSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLER 381 (435)
Q Consensus 307 ~~~~~~~~~~p~~-~ll~~~~v~~~I~----HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~ 381 (435)
.+++.+.++.++. +++..+++ +|. -|.-.++.||+++|+|+|+... ...+..+.+. ..|...+. -+.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~~-~~G~~~~~-~~~ 323 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKHG-ETGFLVDV-GDV 323 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcCC-CceEEcCC-CCH
Confidence 4577777877654 78888888 772 2344599999999999999654 3445566663 67777665 688
Q ss_pred HHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 013836 382 KEIERAILRVMVKAD-SQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIMS 434 (435)
Q Consensus 382 ~~l~~~i~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 434 (435)
+++.+++.++++|++ ..++++++++.. . +.=+....++.+.+..++
T Consensus 324 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~---~----~~fs~~~~~~~~~~~y~~ 370 (371)
T cd04962 324 EAMAEYALSLLEDDELWQEFSRAARNRA---A----ERFDSERIVPQYEALYRR 370 (371)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHH---H----HhCCHHHHHHHHHHHHHh
Confidence 999999999998832 223344444331 2 223456666777666654
No 48
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.08 E-value=2.3e-07 Score=90.89 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=60.3
Q ss_pred CCceEEeecchhh---hhcCCccceEee---ccCc-cchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCC
Q 013836 308 GRGYIVKWAPQQQ---VLAHPAVGCFWT---HSGW-NSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLE 380 (435)
Q Consensus 308 ~~~~~~~~~p~~~---ll~~~~v~~~I~---HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 380 (435)
++|.+.+++|+.+ ++..+++ +|. +.|. .++.||+++|+|+|+... ......+.+. ..|+.++. -+
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~~-~~G~lv~~-~d 352 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITDG-ENGLLVDF-FD 352 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhcccC-CceEEcCC-CC
Confidence 6788889999774 6678888 663 3333 378999999999998644 3444556553 57887776 78
Q ss_pred HHHHHHHHHHHHcC
Q 013836 381 RKEIERAILRVMVK 394 (435)
Q Consensus 381 ~~~l~~~i~~vl~~ 394 (435)
+++|+++|.++++|
T Consensus 353 ~~~la~~i~~ll~~ 366 (396)
T cd03818 353 PDALAAAVIELLDD 366 (396)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999998
No 49
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.08 E-value=5.3e-07 Score=88.86 Aligned_cols=114 Identities=13% Similarity=0.109 Sum_probs=72.8
Q ss_pred CCceEEeecchh---hhhcCCccceEeeccCc------cchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCc
Q 013836 308 GRGYIVKWAPQQ---QVLAHPAVGCFWTHSGW------NSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGK 378 (435)
Q Consensus 308 ~~~~~~~~~p~~---~ll~~~~v~~~I~HGG~------gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~ 378 (435)
+|+.+.+|+|+. +++..+++-.+.+..+. +.+.|++++|+|+|+....+.. ....+. +.|+..+.
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~~- 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVEP- 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeCC-
Confidence 478888999876 46788888444444332 1368999999999998754321 111222 56777775
Q ss_pred CCHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 013836 379 LERKEIERAILRVMVKAD-SQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIMS 434 (435)
Q Consensus 379 ~~~~~l~~~i~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 434 (435)
-+.++|+++|.++++|.+ ...+++++++..+ +-=+....++.+++.+++
T Consensus 358 ~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~-------~~fs~~~~~~~~~~~~~~ 407 (412)
T PRK10307 358 ESVEALVAAIAALARQALLRPKLGTVAREYAE-------RTLDKENVLRQFIADIRG 407 (412)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-------HHcCHHHHHHHHHHHHHH
Confidence 788999999999998832 3344455544333 223345666666665554
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.07 E-value=1.6e-07 Score=90.74 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=60.4
Q ss_pred cCCceEEeecchh---hhhcCCccceEeeccCc---------cchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEE
Q 013836 307 DGRGYIVKWAPQQ---QVLAHPAVGCFWTHSGW---------NSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQ 374 (435)
Q Consensus 307 ~~~~~~~~~~p~~---~ll~~~~v~~~I~HGG~---------gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~ 374 (435)
.+|+.+.+++++. +++..+++ +|..... +++.||+++|+|+|+.+....+.. +.+ .+.|..
T Consensus 274 ~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~----~~~-~~~g~~ 346 (394)
T cd03794 274 LDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAEL----VEE-AGAGLV 346 (394)
T ss_pred CCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhh----hcc-CCcceE
Confidence 3678888999866 46778888 7743332 236999999999999988765443 333 266777
Q ss_pred eCCcCCHHHHHHHHHHHHcCC
Q 013836 375 LEGKLERKEIERAILRVMVKA 395 (435)
Q Consensus 375 ~~~~~~~~~l~~~i~~vl~~~ 395 (435)
++. -+.+++.++|.++++|.
T Consensus 347 ~~~-~~~~~l~~~i~~~~~~~ 366 (394)
T cd03794 347 VPP-GDPEALAAAILELLDDP 366 (394)
T ss_pred eCC-CCHHHHHHHHHHHHhCh
Confidence 765 68999999999999883
No 51
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.06 E-value=2.9e-07 Score=89.93 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=63.1
Q ss_pred cCCceEEeecchhh---hhcCCccceEeec----cCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcC
Q 013836 307 DGRGYIVKWAPQQQ---VLAHPAVGCFWTH----SGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKL 379 (435)
Q Consensus 307 ~~~~~~~~~~p~~~---ll~~~~v~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~ 379 (435)
.+|+.+.+|+|+.+ ++..+++ +++. |--.++.||+++|+|+|+....+ ....+.+ .+.|..++. -
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~~-~~~g~~~~~-~ 353 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIVVD-GVTGLLVDP-R 353 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHccC-CCCeEEeCC-C
Confidence 36788889999775 5788888 7743 32358999999999999876543 4456767 378988876 6
Q ss_pred CHHHHHHHHHHHHcC
Q 013836 380 ERKEIERAILRVMVK 394 (435)
Q Consensus 380 ~~~~l~~~i~~vl~~ 394 (435)
+.+++.++|.++++|
T Consensus 354 ~~~~l~~~i~~l~~~ 368 (398)
T cd03800 354 DPEALAAALRRLLTD 368 (398)
T ss_pred CHHHHHHHHHHHHhC
Confidence 899999999999988
No 52
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.04 E-value=1.1e-07 Score=91.06 Aligned_cols=81 Identities=19% Similarity=0.204 Sum_probs=62.4
Q ss_pred hcCCceEEeecchh---hhhcCCccceEee----ccCc-cchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCC
Q 013836 306 VDGRGYIVKWAPQQ---QVLAHPAVGCFWT----HSGW-NSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEG 377 (435)
Q Consensus 306 ~~~~~~~~~~~p~~---~ll~~~~v~~~I~----HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~ 377 (435)
..+++.+.+|+++. .++..+++ +|. ..|. .++.||+++|+|+|+.+.. .+...+.+. +.|...+.
T Consensus 241 ~~~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~ 313 (359)
T cd03823 241 GDPRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRDG-VNGLLFPP 313 (359)
T ss_pred CCCeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcCC-CcEEEECC
Confidence 34778888999766 46788888 773 2344 4789999999999987653 345566663 67888876
Q ss_pred cCCHHHHHHHHHHHHcC
Q 013836 378 KLERKEIERAILRVMVK 394 (435)
Q Consensus 378 ~~~~~~l~~~i~~vl~~ 394 (435)
-+.+++.+++.++++|
T Consensus 314 -~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 314 -GDAEDLAAALERLIDD 329 (359)
T ss_pred -CCHHHHHHHHHHHHhC
Confidence 6799999999999998
No 53
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.00 E-value=9.1e-07 Score=84.37 Aligned_cols=80 Identities=23% Similarity=0.250 Sum_probs=59.8
Q ss_pred cCCceEEeecchh-hhhcCCccceEeeccC----ccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCH
Q 013836 307 DGRGYIVKWAPQQ-QVLAHPAVGCFWTHSG----WNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLER 381 (435)
Q Consensus 307 ~~~~~~~~~~p~~-~ll~~~~v~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~ 381 (435)
..++.+.++..+. +++..+++ +|.-.. -+++.||+++|+|+|+.+... +...+.+. +.|..++. -+.
T Consensus 245 ~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i~~~-~~g~~~~~-~~~ 316 (359)
T cd03808 245 EGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAVIDG-VNGFLVPP-GDA 316 (359)
T ss_pred cceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhhhcC-cceEEECC-CCH
Confidence 3567777764433 78888988 775432 568999999999999976543 34455553 77887775 789
Q ss_pred HHHHHHHHHHHcC
Q 013836 382 KEIERAILRVMVK 394 (435)
Q Consensus 382 ~~l~~~i~~vl~~ 394 (435)
+++.++|.+++.|
T Consensus 317 ~~~~~~i~~l~~~ 329 (359)
T cd03808 317 EALADAIERLIED 329 (359)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999988
No 54
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.99 E-value=4.4e-07 Score=89.37 Aligned_cols=91 Identities=16% Similarity=0.296 Sum_probs=64.7
Q ss_pred CCceEE-eecchh---hhhcCCccceEee-c---cC---ccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeC
Q 013836 308 GRGYIV-KWAPQQ---QVLAHPAVGCFWT-H---SG---WNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLE 376 (435)
Q Consensus 308 ~~~~~~-~~~p~~---~ll~~~~v~~~I~-H---GG---~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~ 376 (435)
+++.+. +|+|.+ ++|..+++ +|. + -| -+++.||+++|+|+|+.... .....+++. +.|+...
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~----~~~eiv~~~-~~G~lv~ 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK----CIDELVKHG-ENGLVFG 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCCC----CHHHHhcCC-CCEEEEC
Confidence 355554 688865 46788998 663 1 12 33699999999999996543 344567674 7888774
Q ss_pred CcCCHHHHHHHHHHHHcC---Cc-hHHHHHHHHHHH
Q 013836 377 GKLERKEIERAILRVMVK---AD-SQEMRERATYLN 408 (435)
Q Consensus 377 ~~~~~~~l~~~i~~vl~~---~~-~~~~~~~a~~l~ 408 (435)
+.++|+++|.++++| ++ ...|++++++.+
T Consensus 367 ---d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 367 ---DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred ---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 789999999999998 33 566666666655
No 55
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.97 E-value=1e-06 Score=84.72 Aligned_cols=95 Identities=16% Similarity=0.255 Sum_probs=66.7
Q ss_pred cCCceEEeecchhh---hhcCCccceEeec----cCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcC
Q 013836 307 DGRGYIVKWAPQQQ---VLAHPAVGCFWTH----SGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKL 379 (435)
Q Consensus 307 ~~~~~~~~~~p~~~---ll~~~~v~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~ 379 (435)
.+++.+.+++|+.+ ++..+++ +|.- |+..++.||+++|+|+|+... ...+..+.+. +.|..++. .
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~~~~~-~ 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGFLFPP-G 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeEEeCC-C
Confidence 46788889998764 6778888 7743 344689999999999998764 3345566663 78888876 3
Q ss_pred CHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHH
Q 013836 380 ERKEIERAILRVMVKAD-SQEMRERATYLNEK 410 (435)
Q Consensus 380 ~~~~l~~~i~~vl~~~~-~~~~~~~a~~l~~~ 410 (435)
+. ++.+++.+++++.+ ...+++++++..++
T Consensus 330 ~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 360 (374)
T cd03817 330 DE-ALAEALLRLLQDPELRRRLSKNAEESAEK 360 (374)
T ss_pred CH-HHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 33 89999999999832 22344444444433
No 56
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.94 E-value=5.9e-08 Score=85.75 Aligned_cols=98 Identities=12% Similarity=0.154 Sum_probs=79.7
Q ss_pred CCceEEeecc-hhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHHHHHH
Q 013836 308 GRGYIVKWAP-QQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERKEIER 386 (435)
Q Consensus 308 ~~~~~~~~~p-~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~ 386 (435)
+|+.+..... ...|+..+++ .|+-||. |+.|++.-|+|.+++|+..-|---|...+. +|+-..+.-.++.+....
T Consensus 210 ~~i~~~~~~~dma~LMke~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~l~~~l~~~~~~~ 285 (318)
T COG3980 210 PNINLYIDTNDMAELMKEADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQLGYHLKDLAKDY 285 (318)
T ss_pred CCeeeEecchhHHHHHHhcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhhccCCCchHHHHH
Confidence 4444443333 4479999999 9998885 899999999999999999999999999999 699888876688888888
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHHHH
Q 013836 387 AILRVMVKADSQEMRERATYLNEKVD 412 (435)
Q Consensus 387 ~i~~vl~~~~~~~~~~~a~~l~~~~~ 412 (435)
-+.+++.| ...|++...-++.+.
T Consensus 286 ~~~~i~~d---~~~rk~l~~~~~~i~ 308 (318)
T COG3980 286 EILQIQKD---YARRKNLSFGSKLIG 308 (318)
T ss_pred HHHHhhhC---HHHhhhhhhccceee
Confidence 89999999 677777666555554
No 57
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.90 E-value=3.5e-06 Score=82.80 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=61.4
Q ss_pred cCCceEEeecchh---hhhcCCccceEee---ccCc-cchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcC
Q 013836 307 DGRGYIVKWAPQQ---QVLAHPAVGCFWT---HSGW-NSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKL 379 (435)
Q Consensus 307 ~~~~~~~~~~p~~---~ll~~~~v~~~I~---HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~ 379 (435)
.+++.+.+++|.. +++..+++ +|. +.|. .++.||+++|+|+|+....+ ....+.+. +.|...+. -
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i~~~-~~g~~~~~-~ 353 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAVADG-ETGLLVDG-H 353 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhhccC-CceEECCC-C
Confidence 4678888999865 57888998 773 3344 48999999999999976543 33455563 67877775 7
Q ss_pred CHHHHHHHHHHHHcC
Q 013836 380 ERKEIERAILRVMVK 394 (435)
Q Consensus 380 ~~~~l~~~i~~vl~~ 394 (435)
+.+++.++|.++++|
T Consensus 354 d~~~la~~i~~~l~~ 368 (405)
T TIGR03449 354 DPADWADALARLLDD 368 (405)
T ss_pred CHHHHHHHHHHHHhC
Confidence 899999999999998
No 58
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.89 E-value=2.9e-06 Score=80.99 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=76.9
Q ss_pred hcCCceEEeecchh---hhhcCCccceEee----ccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCc
Q 013836 306 VDGRGYIVKWAPQQ---QVLAHPAVGCFWT----HSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGK 378 (435)
Q Consensus 306 ~~~~~~~~~~~p~~---~ll~~~~v~~~I~----HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~ 378 (435)
..+++.+.+++++. +++..+++ +|. -|.-+++.||+++|+|+|+.+. ......+.+. +.|...+.
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~- 325 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPP- 325 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCC-
Confidence 35788888999755 57788888 773 3566799999999999998776 3345566653 78888876
Q ss_pred CCHHHHHHHHHHHHcCCchHHHHHH-HHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 013836 379 LERKEIERAILRVMVKADSQEMRER-ATYLNEKVDICLQQGGSSYQSLGRLTDHI 432 (435)
Q Consensus 379 ~~~~~l~~~i~~vl~~~~~~~~~~~-a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 432 (435)
.+.+++.++|.++++| ++.++. .+...+.+. +.-+.....+.+.+.+
T Consensus 326 ~~~~~l~~~i~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 373 (374)
T cd03801 326 GDPEALAEAILRLLDD---PELRRRLGEAARERVA----ERFSWDRVAARTEEVY 373 (374)
T ss_pred CCHHHHHHHHHHHHcC---hHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHhh
Confidence 7799999999999998 444333 222222333 2334455555555543
No 59
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.85 E-value=9.9e-06 Score=85.83 Aligned_cols=92 Identities=18% Similarity=0.258 Sum_probs=62.7
Q ss_pred cCCceEEeecchhh---hhcCC----ccceEeec---cCc-cchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEe
Q 013836 307 DGRGYIVKWAPQQQ---VLAHP----AVGCFWTH---SGW-NSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQL 375 (435)
Q Consensus 307 ~~~~~~~~~~p~~~---ll~~~----~v~~~I~H---GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~ 375 (435)
.++|.+.+++++.+ ++..+ ++ ||.- =|. .++.||+++|+|+|+....+ ....+... .-|+.+
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g-~nGlLV 619 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVL-DNGLLV 619 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccC-CcEEEE
Confidence 36777778888764 45444 35 7763 344 48999999999999987543 22344442 568877
Q ss_pred CCcCCHHHHHHHHHHHHcCCc-hHHHHHHHHH
Q 013836 376 EGKLERKEIERAILRVMVKAD-SQEMRERATY 406 (435)
Q Consensus 376 ~~~~~~~~l~~~i~~vl~~~~-~~~~~~~a~~ 406 (435)
+. -+++.|+++|.++++|++ ...|.+++++
T Consensus 620 dP-~D~eaLA~AL~~LL~Dpelr~~m~~~gr~ 650 (1050)
T TIGR02468 620 DP-HDQQAIADALLKLVADKQLWAECRQNGLK 650 (1050)
T ss_pred CC-CCHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 76 789999999999999832 2334444443
No 60
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.83 E-value=2.9e-06 Score=81.48 Aligned_cols=84 Identities=19% Similarity=0.166 Sum_probs=62.6
Q ss_pred cCCceEEeecchh---hhhcCCccceEee---ccCcc-chHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcC
Q 013836 307 DGRGYIVKWAPQQ---QVLAHPAVGCFWT---HSGWN-STLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKL 379 (435)
Q Consensus 307 ~~~~~~~~~~p~~---~ll~~~~v~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~ 379 (435)
.+||.+.+|+|+. +++..+++-.+-+ +.|.| ++.||+++|+|+|+............ +. +.|...+. -
T Consensus 243 ~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~-~~g~~~~~-~ 317 (357)
T cd03795 243 LDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HG-VTGLVVPP-G 317 (357)
T ss_pred cceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CC-CceEEeCC-C
Confidence 4789999999975 5777788822223 34444 79999999999999876665544332 33 67877775 7
Q ss_pred CHHHHHHHHHHHHcCC
Q 013836 380 ERKEIERAILRVMVKA 395 (435)
Q Consensus 380 ~~~~l~~~i~~vl~~~ 395 (435)
+.+++.++|.++++|+
T Consensus 318 d~~~~~~~i~~l~~~~ 333 (357)
T cd03795 318 DPAALAEAIRRLLEDP 333 (357)
T ss_pred CHHHHHHHHHHHHHCH
Confidence 8999999999999984
No 61
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.80 E-value=8.6e-06 Score=78.01 Aligned_cols=110 Identities=18% Similarity=0.197 Sum_probs=78.0
Q ss_pred cCCceEEeecchh---hhhcCCccceEe----eccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcC
Q 013836 307 DGRGYIVKWAPQQ---QVLAHPAVGCFW----THSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKL 379 (435)
Q Consensus 307 ~~~~~~~~~~p~~---~ll~~~~v~~~I----~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~ 379 (435)
.+|+.+.+++++. .++..+++ +| +-|.-+++.||+++|+|+|+.+... ....+.+ .+.|...+. -
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~~~-~~~g~~~~~-~ 329 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVGG----IPEIITD-GENGLLVPP-G 329 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCCC----hHHHhcC-CcceeEECC-C
Confidence 4678888999876 56777888 66 3356678999999999999876543 4455666 377788776 7
Q ss_pred CHHHHHHHHHHHHcCCchHH---HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 013836 380 ERKEIERAILRVMVKADSQE---MRERATYLNEKVDICLQQGGSSYQSLGRLTDHIMSL 435 (435)
Q Consensus 380 ~~~~l~~~i~~vl~~~~~~~---~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 435 (435)
+.+++.+++.+++++ +. .+++.+.+.+.+. .....+.+.+.++++
T Consensus 330 ~~~~l~~~i~~~~~~---~~~~~~~~~~~~~~~~~s--------~~~~~~~~~~~~~~l 377 (377)
T cd03798 330 DPEALAEAILRLLAD---PWLRLGRAARRRVAERFS--------WENVAERLLELYREV 377 (377)
T ss_pred CHHHHHHHHHHHhcC---cHHHHhHHHHHHHHHHhh--------HHHHHHHHHHHHhhC
Confidence 899999999999998 45 2333333333333 456677777777654
No 62
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.76 E-value=1.1e-05 Score=76.49 Aligned_cols=89 Identities=20% Similarity=0.243 Sum_probs=62.4
Q ss_pred CCceEEeecc-hhhhhcCCccceEeecc----CccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhc-cEEEeCCcCCH
Q 013836 308 GRGYIVKWAP-QQQVLAHPAVGCFWTHS----GWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWR-VGLQLEGKLER 381 (435)
Q Consensus 308 ~~~~~~~~~p-~~~ll~~~~v~~~I~HG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G-~g~~~~~~~~~ 381 (435)
.++.+.++.. -..++..+++ +|.-. .-+++.||+++|+|+|+.+....+.. +.+. | .|...+. .+.
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~----~~~~-~~~g~~~~~-~~~ 306 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSE----IIED-GVNGLLVPN-GDV 306 (348)
T ss_pred CeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchHh----hhcc-CcceEEeCC-CCH
Confidence 4566666633 2378888888 77554 24689999999999998776554432 3332 4 7888876 788
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHH
Q 013836 382 KEIERAILRVMVKADSQEMRERATYL 407 (435)
Q Consensus 382 ~~l~~~i~~vl~~~~~~~~~~~a~~l 407 (435)
+++.++|.++++| ++.+++..+-
T Consensus 307 ~~~~~~i~~ll~~---~~~~~~~~~~ 329 (348)
T cd03820 307 EALAEALLRLMED---EELRKRMGAN 329 (348)
T ss_pred HHHHHHHHHHHcC---HHHHHHHHHH
Confidence 9999999999999 5554444433
No 63
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.73 E-value=6e-05 Score=74.87 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=59.1
Q ss_pred cCCceEEeecchhhh---hcCC----ccceEeecc---C-ccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEe
Q 013836 307 DGRGYIVKWAPQQQV---LAHP----AVGCFWTHS---G-WNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQL 375 (435)
Q Consensus 307 ~~~~~~~~~~p~~~l---l~~~----~v~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~ 375 (435)
.+++.+.+++++.++ +..+ ++ ||.-. | -.++.||+++|+|+|+....+ ....+.+. ..|+.+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv~~~-~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDIIANC-RNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHhcCC-CcEEEe
Confidence 467777788876654 5544 56 87643 3 459999999999999987533 33445553 578877
Q ss_pred CCcCCHHHHHHHHHHHHcC
Q 013836 376 EGKLERKEIERAILRVMVK 394 (435)
Q Consensus 376 ~~~~~~~~l~~~i~~vl~~ 394 (435)
+. -++++|+++|.++++|
T Consensus 389 ~~-~d~~~la~~i~~ll~~ 406 (439)
T TIGR02472 389 DV-LDLEAIASALEDALSD 406 (439)
T ss_pred CC-CCHHHHHHHHHHHHhC
Confidence 76 7899999999999998
No 64
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.72 E-value=7.9e-06 Score=79.79 Aligned_cols=91 Identities=16% Similarity=0.187 Sum_probs=63.6
Q ss_pred cCCceEEeecchh---hhhcCCccceEeec---cC-ccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcC
Q 013836 307 DGRGYIVKWAPQQ---QVLAHPAVGCFWTH---SG-WNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKL 379 (435)
Q Consensus 307 ~~~~~~~~~~p~~---~ll~~~~v~~~I~H---GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~ 379 (435)
.+++.+.+++|+. .++..+++ ++.. -| -.++.||+++|+|+|+.-..+ ....+.+. +.|...+ .
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~~-~~g~~~~--~ 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVDG-ETGFLCE--P 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhccC-CceEEeC--C
Confidence 4688899999976 46788888 6642 22 257899999999999975533 23345553 6777765 3
Q ss_pred CHHHHHHHHHHHHcCCc-hHHHHHHHHH
Q 013836 380 ERKEIERAILRVMVKAD-SQEMRERATY 406 (435)
Q Consensus 380 ~~~~l~~~i~~vl~~~~-~~~~~~~a~~ 406 (435)
+.+++.++|.+++++++ ...+.+++++
T Consensus 350 ~~~~~a~~i~~l~~~~~~~~~~~~~a~~ 377 (392)
T cd03805 350 TPEEFAEAMLKLANDPDLADRMGAAGRK 377 (392)
T ss_pred CHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 88999999999999832 2334444433
No 65
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.71 E-value=2.3e-05 Score=77.56 Aligned_cols=103 Identities=15% Similarity=0.152 Sum_probs=69.7
Q ss_pred hhhcCCccceEeec-----cCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHHHHHHHHHHHHcC
Q 013836 320 QVLAHPAVGCFWTH-----SGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERKEIERAILRVMVK 394 (435)
Q Consensus 320 ~ll~~~~v~~~I~H-----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~vl~~ 394 (435)
.+++.+++ ++.. ||..++.||+++|+|+|+-|...++......+.+. |+++.. -++++|.++|.++++|
T Consensus 315 ~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~---~d~~~La~~l~~ll~~ 388 (425)
T PRK05749 315 LLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV---EDAEDLAKAVTYLLTD 388 (425)
T ss_pred HHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE---CCHHHHHHHHHHHhcC
Confidence 67788887 5432 34446999999999999999988888888777773 777663 3689999999999998
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 013836 395 ADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIM 433 (435)
Q Consensus 395 ~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 433 (435)
++.+++..+-+.+.... ..|...+.++.+.+.++
T Consensus 389 ---~~~~~~m~~~a~~~~~~--~~~~~~~~~~~l~~~l~ 422 (425)
T PRK05749 389 ---PDARQAYGEAGVAFLKQ--NQGALQRTLQLLEPYLP 422 (425)
T ss_pred ---HHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHhcc
Confidence 55544433333222211 23444555555555444
No 66
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.71 E-value=1.1e-05 Score=77.76 Aligned_cols=114 Identities=13% Similarity=0.065 Sum_probs=74.6
Q ss_pred hcCCceEEeecc-hh---hhhcCCccceEeec----cCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCC
Q 013836 306 VDGRGYIVKWAP-QQ---QVLAHPAVGCFWTH----SGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEG 377 (435)
Q Consensus 306 ~~~~~~~~~~~p-~~---~ll~~~~v~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~ 377 (435)
...++.+.+|++ +. .++..+++ +|.- |..+++.||+++|+|+|+.... .....+.+ -+.|..++.
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~-~~~g~~~~~ 314 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDH-GVTGYLAKP 314 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeC-CCceEEeCC
Confidence 345677779998 43 46888888 8774 3357999999999999987543 22234445 257777775
Q ss_pred cCCHHHHHHHHHHHHcCCchHHHHHH-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 013836 378 KLERKEIERAILRVMVKADSQEMRER-ATYLNEKVDICLQQGGSSYQSLGRLTDHIMS 434 (435)
Q Consensus 378 ~~~~~~l~~~i~~vl~~~~~~~~~~~-a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 434 (435)
.+.+++.+++.++++| ++.+++ .+...+... +.-+.....+++++..++
T Consensus 315 -~~~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~y~~ 364 (365)
T cd03825 315 -GDPEDLAEGIEWLLAD---PDEREELGEAARELAE----NEFDSRVQAKRYLSLYEE 364 (365)
T ss_pred -CCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHhh
Confidence 7899999999999998 442222 222222222 334556666777666654
No 67
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.71 E-value=2.4e-06 Score=80.37 Aligned_cols=114 Identities=14% Similarity=0.055 Sum_probs=75.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCceEEEccCCCCCCCCCCCCCCCCHHHHHHHH
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS-PNSCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSL 93 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (435)
|||++-- ...-|+..+-.+.++|.++||+|.+.+-+... ....+..|+++..++ . .. .+....+...
T Consensus 1 MkIwiDi-~~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG-~---------~g-~~~~~Kl~~~ 68 (335)
T PF04007_consen 1 MKIWIDI-THPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIG-K---------HG-DSLYGKLLES 68 (335)
T ss_pred CeEEEEC-CCchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEc-C---------CC-CCHHHHHHHH
Confidence 6777655 34569999999999999999999999886432 122234688888888 2 11 2222222222
Q ss_pred HHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchH
Q 013836 94 NAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIA 152 (435)
Q Consensus 94 ~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~ 152 (435)
... ...+++.+.+ .+||++|+- .+..+..+|..+|+|+|.+.-....
T Consensus 69 ~~R----~~~l~~~~~~-------~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a 115 (335)
T PF04007_consen 69 IER----QYKLLKLIKK-------FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHA 115 (335)
T ss_pred HHH----HHHHHHHHHh-------hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchh
Confidence 222 2233444443 689999975 3577888999999999998776443
No 68
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.64 E-value=2.7e-05 Score=76.31 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=56.0
Q ss_pred cCCceEEeecchh---hhhcCCccceEee---ccCcc-chHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcC
Q 013836 307 DGRGYIVKWAPQQ---QVLAHPAVGCFWT---HSGWN-STLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKL 379 (435)
Q Consensus 307 ~~~~~~~~~~p~~---~ll~~~~v~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~ 379 (435)
.+++.+.+|+|++ .+++.+++ +|. +-|.| ++.||+++|+|+|+.+..+- ...+.+ |.+... . .
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~----~e~i~~--~~~~~~-~-~ 318 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGGI----PEVLPP--DMILLA-E-P 318 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCCc----hhheeC--Cceeec-C-C
Confidence 4678888999865 57778888 764 33554 99999999999999877532 223434 433222 2 4
Q ss_pred CHHHHHHHHHHHHcC
Q 013836 380 ERKEIERAILRVMVK 394 (435)
Q Consensus 380 ~~~~l~~~i~~vl~~ 394 (435)
+.+++.+++.+++++
T Consensus 319 ~~~~l~~~l~~~l~~ 333 (398)
T cd03796 319 DVESIVRKLEEAISI 333 (398)
T ss_pred CHHHHHHHHHHHHhC
Confidence 789999999999986
No 69
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.64 E-value=2.5e-05 Score=74.93 Aligned_cols=79 Identities=15% Similarity=0.222 Sum_probs=56.7
Q ss_pred cCCceEEeecchh-hhhcCCccceEee----ccCc-cchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCC
Q 013836 307 DGRGYIVKWAPQQ-QVLAHPAVGCFWT----HSGW-NSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLE 380 (435)
Q Consensus 307 ~~~~~~~~~~p~~-~ll~~~~v~~~I~----HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 380 (435)
.+++.+.+|.+.. +++..+++ +|. +-|. +++.||+++|+|+|+.-..+ ....+.+. +.|..++. -+
T Consensus 245 ~~~v~~~g~~~~~~~~l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~----~~e~i~~~-~~g~~~~~-~~ 316 (355)
T cd03819 245 QDRVTFVGHCSDMPAAYALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDHGG----ARETVRPG-ETGLLVPP-GD 316 (355)
T ss_pred cceEEEcCCcccHHHHHHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCCCC----cHHHHhCC-CceEEeCC-CC
Confidence 4678888885433 78888888 553 2333 59999999999999876432 34455553 57888876 79
Q ss_pred HHHHHHHHHHHHc
Q 013836 381 RKEIERAILRVMV 393 (435)
Q Consensus 381 ~~~l~~~i~~vl~ 393 (435)
.+++.++|..++.
T Consensus 317 ~~~l~~~i~~~~~ 329 (355)
T cd03819 317 AEALAQALDQILS 329 (355)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999975554
No 70
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.62 E-value=1.7e-05 Score=76.69 Aligned_cols=81 Identities=17% Similarity=0.259 Sum_probs=63.2
Q ss_pred hcCCceEEeecchh---hhhcCCccceEeec----------cCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccE
Q 013836 306 VDGRGYIVKWAPQQ---QVLAHPAVGCFWTH----------SGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVG 372 (435)
Q Consensus 306 ~~~~~~~~~~~p~~---~ll~~~~v~~~I~H----------GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g 372 (435)
..+++.+.+++|+. +++..+++ +|.- |--+++.||+++|+|+|+.+... +...+.+. +.|
T Consensus 243 ~~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~~-~~g 315 (367)
T cd05844 243 LGGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVEDG-ETG 315 (367)
T ss_pred CCCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhheecC-Cee
Confidence 35678888999876 45778888 6642 23568999999999999877643 45566663 788
Q ss_pred EEeCCcCCHHHHHHHHHHHHcC
Q 013836 373 LQLEGKLERKEIERAILRVMVK 394 (435)
Q Consensus 373 ~~~~~~~~~~~l~~~i~~vl~~ 394 (435)
..++. -+.++|.++|.++++|
T Consensus 316 ~~~~~-~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 316 LLVPE-GDVAALAAALGRLLAD 336 (367)
T ss_pred EEECC-CCHHHHHHHHHHHHcC
Confidence 88876 7889999999999998
No 71
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.62 E-value=7.4e-05 Score=71.65 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=56.7
Q ss_pred cCCceEEeecchh---hhhcCCccceEeec----cCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcC
Q 013836 307 DGRGYIVKWAPQQ---QVLAHPAVGCFWTH----SGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKL 379 (435)
Q Consensus 307 ~~~~~~~~~~p~~---~ll~~~~v~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~ 379 (435)
.+++.+.+|+++. .++..+++ +|.- |--+++.||+++|+|+|+.+..+ ....+.+ +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~----~~~~~~~--~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKVP----WQELIEY--GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCCC----HHHHhhc--CceEEeCC--
Confidence 4678888999965 45778888 6543 22457999999999999976432 2333333 66766654
Q ss_pred CHHHHHHHHHHHHcC
Q 013836 380 ERKEIERAILRVMVK 394 (435)
Q Consensus 380 ~~~~l~~~i~~vl~~ 394 (435)
+.+++.++|.++++|
T Consensus 331 ~~~~~~~~i~~l~~~ 345 (375)
T cd03821 331 DVDALAAALRRALEL 345 (375)
T ss_pred ChHHHHHHHHHHHhC
Confidence 459999999999998
No 72
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.57 E-value=2.2e-05 Score=75.32 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=61.3
Q ss_pred hcCCceEEeecchh---hhhcCCccceEee----------ccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccE
Q 013836 306 VDGRGYIVKWAPQQ---QVLAHPAVGCFWT----------HSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVG 372 (435)
Q Consensus 306 ~~~~~~~~~~~p~~---~ll~~~~v~~~I~----------HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g 372 (435)
..+|+.+.+++|+. .++..+++ +|. -|.-+++.||+++|+|+|+.+... ....+.+ -..|
T Consensus 234 ~~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~-~~~g 306 (355)
T cd03799 234 LEDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVED-GETG 306 (355)
T ss_pred CCCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhC-CCce
Confidence 35788888999865 46677888 665 234468999999999999876532 2234555 2488
Q ss_pred EEeCCcCCHHHHHHHHHHHHcCC
Q 013836 373 LQLEGKLERKEIERAILRVMVKA 395 (435)
Q Consensus 373 ~~~~~~~~~~~l~~~i~~vl~~~ 395 (435)
..++. -+.+++.++|.++++|+
T Consensus 307 ~~~~~-~~~~~l~~~i~~~~~~~ 328 (355)
T cd03799 307 LLVPP-GDPEALADAIERLLDDP 328 (355)
T ss_pred EEeCC-CCHHHHHHHHHHHHhCH
Confidence 88775 68999999999999983
No 73
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.55 E-value=6e-05 Score=72.37 Aligned_cols=109 Identities=18% Similarity=0.215 Sum_probs=72.0
Q ss_pred cCCceEE-eecchh---hhhcCCccceEee----c--cCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeC
Q 013836 307 DGRGYIV-KWAPQQ---QVLAHPAVGCFWT----H--SGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLE 376 (435)
Q Consensus 307 ~~~~~~~-~~~p~~---~ll~~~~v~~~I~----H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~ 376 (435)
.+++.+. +|+|+. .++..+++ +|. - |..+++.||+++|+|+|+.+... ...+... +.|...+
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEc
Confidence 4677777 458865 57778888 663 2 44558899999999999987654 2334553 7788777
Q ss_pred CcCCHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 013836 377 GKLERKEIERAILRVMVKAD-SQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHI 432 (435)
Q Consensus 377 ~~~~~~~l~~~i~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 432 (435)
. -+.+++.+++.++++|.+ ..++++++++..++ -+-...++++.+.+
T Consensus 318 ~-~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~--------~s~~~~~~~~~~~~ 365 (366)
T cd03822 318 P-GDPAALAEAIRRLLADPELAQALRARAREYARA--------MSWERVAERYLRLL 365 (366)
T ss_pred C-CCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh--------CCHHHHHHHHHHHh
Confidence 6 679999999999999832 23334444333333 33455555555543
No 74
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.55 E-value=1e-06 Score=85.26 Aligned_cols=78 Identities=13% Similarity=0.098 Sum_probs=58.1
Q ss_pred cCCceEEeecchh---hhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHHH
Q 013836 307 DGRGYIVKWAPQQ---QVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERKE 383 (435)
Q Consensus 307 ~~~~~~~~~~p~~---~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~ 383 (435)
.+++.+.+..++. .++..+++ ||+-.| |.+.||+++|+|+|+++...+ +..+.+ -|++..+. -+.++
T Consensus 257 ~~~v~~~~~~~~~~~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~-~g~~~~~~--~~~~~ 326 (363)
T cd03786 257 HPNVLLISPLGYLYFLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVE-SGTNVLVG--TDPEA 326 (363)
T ss_pred CCCEEEECCcCHHHHHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhh-eeeEEecC--CCHHH
Confidence 3677776655443 56778999 999999 778899999999999874322 334445 37766554 26899
Q ss_pred HHHHHHHHHcC
Q 013836 384 IERAILRVMVK 394 (435)
Q Consensus 384 l~~~i~~vl~~ 394 (435)
|.++|.+++++
T Consensus 327 i~~~i~~ll~~ 337 (363)
T cd03786 327 ILAAIEKLLSD 337 (363)
T ss_pred HHHHHHHHhcC
Confidence 99999999998
No 75
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.47 E-value=6.7e-05 Score=71.11 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=58.0
Q ss_pred cCCceEEeecchh-hhhcCCccceEeec----cCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCH
Q 013836 307 DGRGYIVKWAPQQ-QVLAHPAVGCFWTH----SGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLER 381 (435)
Q Consensus 307 ~~~~~~~~~~p~~-~ll~~~~v~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~ 381 (435)
.+++.+.++.++. +++..+++ +|.- |.-+++.||+++|+|+|+.... .....+.+. +.|...+. -+.
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~-~~~ 316 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPV-GDE 316 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECC-CCH
Confidence 4577777887654 78888888 6632 3456799999999999986554 445567773 88888886 677
Q ss_pred HHH---HHHHHHHHcC
Q 013836 382 KEI---ERAILRVMVK 394 (435)
Q Consensus 382 ~~l---~~~i~~vl~~ 394 (435)
+.+ .+++..++++
T Consensus 317 ~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 317 AALAAAALALLDLLLD 332 (353)
T ss_pred HHHHHHHHHHHhccCC
Confidence 777 5666666666
No 76
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.46 E-value=0.00062 Score=70.85 Aligned_cols=78 Identities=12% Similarity=0.217 Sum_probs=53.6
Q ss_pred cCCceEEeec-ch---hhhhcC----CccceEee---ccCc-cchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEE
Q 013836 307 DGRGYIVKWA-PQ---QQVLAH----PAVGCFWT---HSGW-NSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQ 374 (435)
Q Consensus 307 ~~~~~~~~~~-p~---~~ll~~----~~v~~~I~---HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~ 374 (435)
.++|.+.++. +. .+++.+ +++ ||. .=|. .++.||++||+|+|+.-.. .....+.+. .-|..
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV~dg-~tGfL 690 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEIIQDG-VSGFH 690 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEE
Confidence 3677776664 32 234432 245 663 3343 4899999999999996553 345566663 67888
Q ss_pred eCCcCCHHHHHHHHHHHH
Q 013836 375 LEGKLERKEIERAILRVM 392 (435)
Q Consensus 375 ~~~~~~~~~l~~~i~~vl 392 (435)
++. -++++++++|.+++
T Consensus 691 Vdp-~D~eaLA~aL~~ll 707 (784)
T TIGR02470 691 IDP-YHGEEAAEKIVDFF 707 (784)
T ss_pred eCC-CCHHHHHHHHHHHH
Confidence 887 78899999999876
No 77
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.44 E-value=1.9e-05 Score=75.09 Aligned_cols=78 Identities=13% Similarity=0.114 Sum_probs=56.6
Q ss_pred cCCceEEeecchh---hhhcCCccceEee----ccCc-cchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCc
Q 013836 307 DGRGYIVKWAPQQ---QVLAHPAVGCFWT----HSGW-NSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGK 378 (435)
Q Consensus 307 ~~~~~~~~~~p~~---~ll~~~~v~~~I~----HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~ 378 (435)
.+++.+.+++++. .+++.+++ +|. +-|. .++.||+++|+|+|+....+ ....+.+. ..|...+.
T Consensus 223 ~~~v~~~G~~~~~~~~~~~~~~d~--~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~----~~e~i~~~-~~g~l~~~- 294 (335)
T cd03802 223 GPDIEYLGEVGGAEKAELLGNARA--LLFPILWEEPFGLVMIEAMACGTPVIAFRRGA----VPEVVEDG-VTGFLVDS- 294 (335)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCcccCCcchHHHHHHhcCCCEEEeCCCC----chhheeCC-CcEEEeCC-
Confidence 5788899999976 46778888 553 2344 47999999999999876632 22344441 36776664
Q ss_pred CCHHHHHHHHHHHHcC
Q 013836 379 LERKEIERAILRVMVK 394 (435)
Q Consensus 379 ~~~~~l~~~i~~vl~~ 394 (435)
.+++.+++.+++..
T Consensus 295 --~~~l~~~l~~l~~~ 308 (335)
T cd03802 295 --VEELAAAVARADRL 308 (335)
T ss_pred --HHHHHHHHHHHhcc
Confidence 89999999998765
No 78
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.44 E-value=0.00021 Score=68.18 Aligned_cols=107 Identities=15% Similarity=0.158 Sum_probs=66.2
Q ss_pred CCceEEeecch-hhhhcCCccceEeeccC----ccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHH
Q 013836 308 GRGYIVKWAPQ-QQVLAHPAVGCFWTHSG----WNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERK 382 (435)
Q Consensus 308 ~~~~~~~~~p~-~~ll~~~~v~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~ 382 (435)
+++.+.+...+ .+++..+++ +|..+. -+++.||+++|+|+|+... ..+...+.+ .|..++. -+.+
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~~---~g~~~~~-~~~~ 320 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVGD---TGFLVPP-GDPE 320 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhhc---CCEEeCC-CCHH
Confidence 45665554443 378888998 886544 3799999999999998544 333444433 4455554 5789
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 013836 383 EIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTD 430 (435)
Q Consensus 383 ~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 430 (435)
++.+++.++++|. +.+++..+...+.+. +.=+-....+.+.+
T Consensus 321 ~l~~~i~~l~~~~--~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~ 362 (365)
T cd03807 321 ALAEAIEALLADP--ALRQALGEAARERIE----ENFSIEAMVEAYEE 362 (365)
T ss_pred HHHHHHHHHHhCh--HHHHHHHHHHHHHHH----HhCCHHHHHHHHHH
Confidence 9999999999983 233333333333333 23344445555444
No 79
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.42 E-value=0.00047 Score=66.25 Aligned_cols=108 Identities=13% Similarity=0.125 Sum_probs=63.3
Q ss_pred cCCceEEeecchhh---hhcCCccceEeeccCc-----cchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCc
Q 013836 307 DGRGYIVKWAPQQQ---VLAHPAVGCFWTHSGW-----NSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGK 378 (435)
Q Consensus 307 ~~~~~~~~~~p~~~---ll~~~~v~~~I~HGG~-----gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~ 378 (435)
.++|.+.+++|+.+ ++..+++ ++-+.-. +++.||+++|+|+|+....... ..+.. -|...+.
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~----e~~~~---~g~~~~~- 316 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNR----EVLGD---KAIYFKV- 316 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCccc----eeecC---CeeEecC-
Confidence 47888889999874 5556777 6655433 3789999999999987654321 11222 2222332
Q ss_pred CCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 013836 379 LERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHI 432 (435)
Q Consensus 379 ~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 432 (435)
-+ .+.+++.++++| ++..++ +++..++...+.-+-....+++++.+
T Consensus 317 ~~--~l~~~i~~l~~~---~~~~~~---~~~~~~~~~~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 317 GD--DLASLLEELEAD---PEEVSA---MAKAARERIREKYTWEKIADQYEELY 362 (363)
T ss_pred ch--HHHHHHHHHHhC---HHHHHH---HHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 11 299999999998 433332 22222222223344555566665543
No 80
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.41 E-value=4.1e-05 Score=72.66 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=72.9
Q ss_pred hhhhcCCccceEeeccCccchHHHHhhCCCeeeccC--CCchhHHHHHHH---hhhccEEEe-------------CC-cC
Q 013836 319 QQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPY--FGDQMVNSRYVS---HAWRVGLQL-------------EG-KL 379 (435)
Q Consensus 319 ~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~--~~DQ~~na~~v~---~~~G~g~~~-------------~~-~~ 379 (435)
.+++..+++ +|+-.|-.|+ |+..+|+|||+ ++ ..-|..||+++. . .|+.--+ .. ..
T Consensus 230 ~~~m~~aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~~ 304 (347)
T PRK14089 230 HKALLEAEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQEFV 304 (347)
T ss_pred HHHHHhhhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhcccC
Confidence 478899999 9999999999 99999999988 44 557899999988 4 3555333 12 68
Q ss_pred CHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 013836 380 ERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLT 429 (435)
Q Consensus 380 ~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 429 (435)
|++.|.+++.+ ... +.+++...++.+.+. . +++.++.+.+.
T Consensus 305 t~~~la~~i~~-~~~---~~~~~~~~~l~~~l~----~-~a~~~~A~~i~ 345 (347)
T PRK14089 305 TVENLLKAYKE-MDR---EKFFKKSKELREYLK----H-GSAKNVAKILK 345 (347)
T ss_pred CHHHHHHHHHH-HHH---HHHHHHHHHHHHHhc----C-CHHHHHHHHHh
Confidence 99999999987 333 577777777777665 3 66666655544
No 81
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.39 E-value=0.00012 Score=70.64 Aligned_cols=98 Identities=15% Similarity=0.151 Sum_probs=66.8
Q ss_pred hcCCceEEeecch--h---hhhcCCccceEeec----cCccchHHHHhhCCCeeecc-CCCchhHHHHHHHhhhccEEEe
Q 013836 306 VDGRGYIVKWAPQ--Q---QVLAHPAVGCFWTH----SGWNSTLESICEGIPMICQP-YFGDQMVNSRYVSHAWRVGLQL 375 (435)
Q Consensus 306 ~~~~~~~~~~~p~--~---~ll~~~~v~~~I~H----GG~gs~~eal~~GvP~v~~P-~~~DQ~~na~~v~~~~G~g~~~ 375 (435)
+++++.+.+|+++ . +.+..+++ +|.- |--.++.||+++|+|+|+.- ..+ ....+.+. ..|..+
T Consensus 234 l~~~v~f~G~~~~~~~~~~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~-~~G~lv 306 (359)
T PRK09922 234 IEQRIIWHGWQSQPWEVVQQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPG-LNGELY 306 (359)
T ss_pred CCCeEEEecccCCcHHHHHHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCC-CceEEE
Confidence 3578888898754 2 34555677 6643 33569999999999999876 332 22345553 568777
Q ss_pred CCcCCHHHHHHHHHHHHcCCc---hHHHHHHHHHHHHHH
Q 013836 376 EGKLERKEIERAILRVMVKAD---SQEMRERATYLNEKV 411 (435)
Q Consensus 376 ~~~~~~~~l~~~i~~vl~~~~---~~~~~~~a~~l~~~~ 411 (435)
+. -+.+++.++|.++++|++ ...+++++++++.+.
T Consensus 307 ~~-~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 344 (359)
T PRK09922 307 TP-GNIDEFVGKLNKVISGEVKYQHDAIPNSIERFYEVL 344 (359)
T ss_pred CC-CCHHHHHHHHHHHHhCcccCCHHHHHHHHHHhhHHH
Confidence 76 799999999999999853 233455555554443
No 82
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.31 E-value=0.00042 Score=66.52 Aligned_cols=109 Identities=11% Similarity=0.022 Sum_probs=68.3
Q ss_pred cCCceEEeecchh-hhhcCCccceEeecc----CccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCH
Q 013836 307 DGRGYIVKWAPQQ-QVLAHPAVGCFWTHS----GWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLER 381 (435)
Q Consensus 307 ~~~~~~~~~~p~~-~ll~~~~v~~~I~HG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~ 381 (435)
.+|+.+.++..+. +++..+++ +|.-. .-+++.||+++|+|+|+. |...+...+.+ .|. .+.. -+.
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~-~g~--~~~~-~~~ 313 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD-SGL--IVPI-SDP 313 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC-Cce--EeCC-CCH
Confidence 3578888876543 78888888 66532 256899999999999974 33444445544 244 4444 688
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 013836 382 KEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDH 431 (435)
Q Consensus 382 ~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 431 (435)
+++.+++.+++++. +.+++.....+..+. +.-+-....+.+++.
T Consensus 314 ~~~~~~i~~ll~~~--~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~ 357 (360)
T cd04951 314 EALANKIDEILKMS--GEERDIIGARRERIV----KKFSINSIVQQWLTL 357 (360)
T ss_pred HHHHHHHHHHHhCC--HHHHHHHHHHHHHHH----HhcCHHHHHHHHHHH
Confidence 99999999999532 555554444333333 233344444444443
No 83
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.28 E-value=0.00042 Score=67.94 Aligned_cols=110 Identities=18% Similarity=0.152 Sum_probs=71.1
Q ss_pred cCCceEEeecchh-hhhcCCccceEe--ec--cCcc-chHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCC
Q 013836 307 DGRGYIVKWAPQQ-QVLAHPAVGCFW--TH--SGWN-STLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLE 380 (435)
Q Consensus 307 ~~~~~~~~~~p~~-~ll~~~~v~~~I--~H--GG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 380 (435)
.+++.+.+++++. .++..+++ +| ++ .|.+ .+.||+++|+|+|+.+...+.. ... -|.|+.+. -+
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~-~~~g~lv~--~~ 348 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DAL-PGAELLVA--AD 348 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----ccc-CCcceEeC--CC
Confidence 3578888999865 78888998 76 32 4554 6999999999999988643321 123 26676664 58
Q ss_pred HHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 013836 381 RKEIERAILRVMVKAD-SQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIM 433 (435)
Q Consensus 381 ~~~l~~~i~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 433 (435)
+++++++|.++++|.+ ...+.+++++.. . +.-+-...++.+++.++
T Consensus 349 ~~~la~ai~~ll~~~~~~~~~~~~ar~~v---~----~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 349 PADFAAAILALLANPAEREELGQAARRRV---L----QHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHH---H----HhCCHHHHHHHHHHHhc
Confidence 9999999999999832 222333333322 1 23345555666655543
No 84
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.22 E-value=0.0025 Score=62.07 Aligned_cols=78 Identities=18% Similarity=0.209 Sum_probs=55.6
Q ss_pred CceEE-eecchh---hhhcCCccceEeec----cCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCC
Q 013836 309 RGYIV-KWAPQQ---QVLAHPAVGCFWTH----SGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLE 380 (435)
Q Consensus 309 ~~~~~-~~~p~~---~ll~~~~v~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 380 (435)
++... +++++. +++..+++ +|.= |...++.||+++|+|+|+.... .....+.+. +.|..++. -+
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i~~~-~~G~~~~~-~~ 332 (388)
T TIGR02149 261 GIIWINKMLPKEELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVVVDG-ETGFLVPP-DN 332 (388)
T ss_pred ceEEecCCCCHHHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHhhCC-CceEEcCC-CC
Confidence 35443 677755 56788998 7742 3334679999999999997643 344556663 67888775 33
Q ss_pred H------HHHHHHHHHHHcC
Q 013836 381 R------KEIERAILRVMVK 394 (435)
Q Consensus 381 ~------~~l~~~i~~vl~~ 394 (435)
. ++|.++|.++++|
T Consensus 333 ~~~~~~~~~l~~~i~~l~~~ 352 (388)
T TIGR02149 333 SDADGFQAELAKAINILLAD 352 (388)
T ss_pred CcccchHHHHHHHHHHHHhC
Confidence 3 8999999999998
No 85
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.22 E-value=0.0014 Score=63.51 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=71.1
Q ss_pred CCceEEeecchh-hhhcCCccceEee--c--cCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHH
Q 013836 308 GRGYIVKWAPQQ-QVLAHPAVGCFWT--H--SGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERK 382 (435)
Q Consensus 308 ~~~~~~~~~p~~-~ll~~~~v~~~I~--H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~ 382 (435)
+++.+.++..+. +++..+++ +|. + |--.++.||+++|+|+|+....+ +...+.+. ..|..++. -+.+
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i~~~-~~g~~~~~-~d~~ 326 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELVQHG-VTGALVPP-GDAV 326 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHhcCC-CceEEeCC-CCHH
Confidence 455555654433 78889998 763 2 44569999999999999977533 34455553 57887775 7889
Q ss_pred HHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 013836 383 EIERAILRVMVKAD-SQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIMS 434 (435)
Q Consensus 383 ~l~~~i~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 434 (435)
++.++|.++++|++ ...+.+++++.. . +.=+....++++++..++
T Consensus 327 ~la~~i~~l~~~~~~~~~~~~~a~~~~---~----~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 327 ALARALQPYVSDPAARRAHGAAGRARA---E----QQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHH---H----HhCCHHHHHHHHHHHHHH
Confidence 99999999998821 112233333222 1 233455556666555443
No 86
>PLN02275 transferase, transferring glycosyl groups
Probab=98.21 E-value=0.0016 Score=63.11 Aligned_cols=75 Identities=15% Similarity=0.272 Sum_probs=53.8
Q ss_pred CCceEEe-ecchhh---hhcCCccceEee-c-----cC-ccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeC
Q 013836 308 GRGYIVK-WAPQQQ---VLAHPAVGCFWT-H-----SG-WNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLE 376 (435)
Q Consensus 308 ~~~~~~~-~~p~~~---ll~~~~v~~~I~-H-----GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~ 376 (435)
+|+.+.. |+|..+ +++.+++ +|. + -| -+++.||+++|+|+|+... ..+...+.+. +.|...+
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEEC
Confidence 4566654 788765 5888999 773 1 12 2479999999999999753 2355667674 7888876
Q ss_pred CcCCHHHHHHHHHHHH
Q 013836 377 GKLERKEIERAILRVM 392 (435)
Q Consensus 377 ~~~~~~~l~~~i~~vl 392 (435)
++++|+++|.++|
T Consensus 359 ---~~~~la~~i~~l~ 371 (371)
T PLN02275 359 ---SSSELADQLLELL 371 (371)
T ss_pred ---CHHHHHHHHHHhC
Confidence 4889999998764
No 87
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.18 E-value=0.00081 Score=66.26 Aligned_cols=71 Identities=14% Similarity=0.167 Sum_probs=52.2
Q ss_pred EeecchhhhhcCCccceEeec----cCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHHHHHHHH
Q 013836 313 VKWAPQQQVLAHPAVGCFWTH----SGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERKEIERAI 388 (435)
Q Consensus 313 ~~~~p~~~ll~~~~v~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i 388 (435)
.++.+..+++..+++ ||.= |--.++.||+++|+|+|+.-.... ..+.+. +-|... -+.+++.+++
T Consensus 289 ~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~~-----~~v~~~-~ng~~~---~~~~~~a~ai 357 (462)
T PLN02846 289 PGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPSN-----EFFKQF-PNCRTY---DDGKGFVRAT 357 (462)
T ss_pred CCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCCc-----ceeecC-CceEec---CCHHHHHHHH
Confidence 366666679989988 8876 445689999999999999876532 334442 455444 3688999999
Q ss_pred HHHHcC
Q 013836 389 LRVMVK 394 (435)
Q Consensus 389 ~~vl~~ 394 (435)
.++|.+
T Consensus 358 ~~~l~~ 363 (462)
T PLN02846 358 LKALAE 363 (462)
T ss_pred HHHHcc
Confidence 999986
No 88
>PLN00142 sucrose synthase
Probab=98.15 E-value=0.001 Score=69.36 Aligned_cols=77 Identities=10% Similarity=0.170 Sum_probs=50.6
Q ss_pred CCceEEee----cchhhhhc----CCccceEee---ccCcc-chHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEe
Q 013836 308 GRGYIVKW----APQQQVLA----HPAVGCFWT---HSGWN-STLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQL 375 (435)
Q Consensus 308 ~~~~~~~~----~p~~~ll~----~~~v~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~ 375 (435)
++|.+.+. .+..++.. .+++ ||. .-|.| ++.||+++|+|+|+.... -....|.+. .-|..+
T Consensus 642 ~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdvG----G~~EIV~dG-~tG~LV 714 (815)
T PLN00142 642 GQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQG----GPAEIIVDG-VSGFHI 714 (815)
T ss_pred CcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEEe
Confidence 55655443 33334443 2455 664 35666 899999999999996553 344566663 578888
Q ss_pred CCcCCHHHHHHHHHHHH
Q 013836 376 EGKLERKEIERAILRVM 392 (435)
Q Consensus 376 ~~~~~~~~l~~~i~~vl 392 (435)
+. -++++++++|.+++
T Consensus 715 ~P-~D~eaLA~aI~~lL 730 (815)
T PLN00142 715 DP-YHGDEAANKIADFF 730 (815)
T ss_pred CC-CCHHHHHHHHHHHH
Confidence 86 77888888876644
No 89
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.12 E-value=0.0011 Score=63.59 Aligned_cols=86 Identities=12% Similarity=0.078 Sum_probs=60.6
Q ss_pred cCCceEEeecch-hhhhcCCccceEeec----cCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCH
Q 013836 307 DGRGYIVKWAPQ-QQVLAHPAVGCFWTH----SGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLER 381 (435)
Q Consensus 307 ~~~~~~~~~~p~-~~ll~~~~v~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~ 381 (435)
.+++.+.++..+ .+++..+++ +|+- |--.++.||+++|+|+|+....+- ...+.+ +.+..... -++
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~----~~~i~~--~~~~~~~~-~~~ 318 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTITK----EVDLTD--LVKFLSLD-ESP 318 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCch----hhhhcc--CccEEeCC-CCH
Confidence 467777777444 378888888 6643 456789999999999998766443 223444 45555554 568
Q ss_pred HHHHHHHHHHHcCCchHHHHHHH
Q 013836 382 KEIERAILRVMVKADSQEMRERA 404 (435)
Q Consensus 382 ~~l~~~i~~vl~~~~~~~~~~~a 404 (435)
++++++|.++++| ++.+++.
T Consensus 319 ~~~a~~i~~l~~~---~~~~~~~ 338 (358)
T cd03812 319 EIWAEEILKLKSE---DRRERSS 338 (358)
T ss_pred HHHHHHHHHHHhC---cchhhhh
Confidence 9999999999999 5554443
No 90
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.02 E-value=0.002 Score=61.65 Aligned_cols=90 Identities=16% Similarity=0.201 Sum_probs=61.4
Q ss_pred hcCCceEEeecchh---hhhcCCccceEeec----cCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCc
Q 013836 306 VDGRGYIVKWAPQQ---QVLAHPAVGCFWTH----SGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGK 378 (435)
Q Consensus 306 ~~~~~~~~~~~p~~---~ll~~~~v~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~ 378 (435)
..+++.+.+++|+. +++..+++ +|.- |..+++.||+++|+|+|+..... ....+.+ .|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~---~~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGD---AALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecC---ceeeeCC-
Confidence 45778888999876 46777887 5532 34568999999999999865422 1112222 3444554
Q ss_pred CCHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 013836 379 LERKEIERAILRVMVKADSQEMRERATYLN 408 (435)
Q Consensus 379 ~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~ 408 (435)
.+.+++.++|.++++| ++.+.+..+-+
T Consensus 321 ~~~~~~~~~i~~l~~~---~~~~~~~~~~~ 347 (365)
T cd03809 321 LDPEALAAAIERLLED---PALREELRERG 347 (365)
T ss_pred CCHHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence 6899999999999998 56555544433
No 91
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.02 E-value=0.0017 Score=62.16 Aligned_cols=100 Identities=19% Similarity=0.244 Sum_probs=67.6
Q ss_pred hhhhhcCCccceEeeccCccchHHHHhhCCCeeecc-CCCchhHHHHHHHhhhccEEEe--------------CCcCCHH
Q 013836 318 QQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQP-YFGDQMVNSRYVSHAWRVGLQL--------------EGKLERK 382 (435)
Q Consensus 318 ~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P-~~~DQ~~na~~v~~~~G~g~~~--------------~~~~~~~ 382 (435)
-.++|..+++ .+.-.| ..|.|+...|+|||++= ...=-...|+++.+ ..- +.+ ....|++
T Consensus 254 ~~~~m~~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk-~~~-isL~Niia~~~v~PEliQ~~~~~~ 328 (373)
T PF02684_consen 254 SYDAMAAADA--ALAASG-TATLEAALLGVPMVVAYKVSPLTYFIAKRLVK-VKY-ISLPNIIAGREVVPELIQEDATPE 328 (373)
T ss_pred hHHHHHhCcc--hhhcCC-HHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhc-CCE-eechhhhcCCCcchhhhcccCCHH
Confidence 3468888887 665555 35789999999998764 33333445666654 221 221 1168999
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 013836 383 EIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSL 425 (435)
Q Consensus 383 ~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~ 425 (435)
.|.+++..+|+| ++.++..+...+.+.+..+.|.++.++.
T Consensus 329 ~i~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (373)
T PF02684_consen 329 NIAAELLELLEN---PEKRKKQKELFREIRQLLGPGASSRAAQ 368 (373)
T ss_pred HHHHHHHHHhcC---HHHHHHHHHHHHHHHHhhhhccCCHHHH
Confidence 999999999999 6667777777777776666676665543
No 92
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=97.99 E-value=2.5e-05 Score=62.51 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=52.1
Q ss_pred Eeecch-hhhhcCCccceEeeccCccchHHHHhhCCCeeecc----CCCchhHHHHHHHhhhccEEEeCC
Q 013836 313 VKWAPQ-QQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQP----YFGDQMVNSRYVSHAWRVGLQLEG 377 (435)
Q Consensus 313 ~~~~p~-~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P----~~~DQ~~na~~v~~~~G~g~~~~~ 377 (435)
..|-|- .+....+++ +|.|+|.||+.|.++.|+|.|+++ +-+.|-.-|..+++ .|-=.....
T Consensus 68 y~f~psl~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~-egyL~~C~p 134 (170)
T KOG3349|consen 68 YDFSPSLTEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE-EGYLYYCTP 134 (170)
T ss_pred EecCccHHHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh-cCcEEEeec
Confidence 366775 577778999 999999999999999999999999 47789999999988 476665554
No 93
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.99 E-value=0.0064 Score=63.24 Aligned_cols=95 Identities=16% Similarity=0.194 Sum_probs=64.9
Q ss_pred cCCceEEeecchh-hhhcCCccceEee---ccCc-cchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCC-cCC
Q 013836 307 DGRGYIVKWAPQQ-QVLAHPAVGCFWT---HSGW-NSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEG-KLE 380 (435)
Q Consensus 307 ~~~~~~~~~~p~~-~ll~~~~v~~~I~---HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~ 380 (435)
.++|.+.+|.++. .++..+++ ||. +.|. +++.||+++|+|+|+.... .....+.+. ..|+.++. ..+
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~~d~~ 645 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPADTVT 645 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCCCCCC
Confidence 4788888988754 78888888 765 4554 5899999999999998753 234456663 56888875 456
Q ss_pred HHHHHHHHHHHHcCCc-hHHHHHHHHHHH
Q 013836 381 RKEIERAILRVMVKAD-SQEMRERATYLN 408 (435)
Q Consensus 381 ~~~l~~~i~~vl~~~~-~~~~~~~a~~l~ 408 (435)
++++.+++.+++.+.. -+.+++++++..
T Consensus 646 ~~~La~aL~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 646 APDVAEALARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred hHHHHHHHHHHHhChhccHHHHHHHHHHH
Confidence 6677777766654210 167776665544
No 94
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.93 E-value=0.0049 Score=59.76 Aligned_cols=113 Identities=17% Similarity=0.171 Sum_probs=70.5
Q ss_pred cCCceEEeec--chh---hhhcCCccceEeecc---C-ccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCC
Q 013836 307 DGRGYIVKWA--PQQ---QVLAHPAVGCFWTHS---G-WNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEG 377 (435)
Q Consensus 307 ~~~~~~~~~~--p~~---~ll~~~~v~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~ 377 (435)
.+++.+.++. ++. .+++.+++ ||.-. | -.++.||+++|+|+|+....+ ....+.+. ..|+..+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~-~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDG-ETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccC-CceEEeC-
Confidence 4567777776 433 56788888 87533 3 348999999999999876432 23345553 5676554
Q ss_pred cCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 013836 378 KLERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIMSL 435 (435)
Q Consensus 378 ~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 435 (435)
+.+.++.+|.++++| ++.++...+-+.+.. .+.-+-...++++++.++++
T Consensus 323 --~~~~~a~~i~~ll~~---~~~~~~~~~~a~~~~---~~~~s~~~~~~~~~~~~~~~ 372 (372)
T cd03792 323 --TVEEAAVRILYLLRD---PELRRKMGANAREHV---RENFLITRHLKDYLYLISKL 372 (372)
T ss_pred --CcHHHHHHHHHHHcC---HHHHHHHHHHHHHHH---HHHcCHHHHHHHHHHHHHhC
Confidence 456788899999988 444433222222211 12334566677777766653
No 95
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.93 E-value=0.00069 Score=67.87 Aligned_cols=84 Identities=14% Similarity=0.239 Sum_probs=54.7
Q ss_pred hcCCceE-Eeecchh--hhhcCCccceEee---ccCcc-chHHHHhhCCCeeeccCCC--chhHHHHHHHhhhccEEEeC
Q 013836 306 VDGRGYI-VKWAPQQ--QVLAHPAVGCFWT---HSGWN-STLESICEGIPMICQPYFG--DQMVNSRYVSHAWRVGLQLE 376 (435)
Q Consensus 306 ~~~~~~~-~~~~p~~--~ll~~~~v~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~g~~~~ 376 (435)
.+.++.+ .+|-... .+++.+++ +|. +-|.| +.+||+++|+|.|+....+ |.-.+...-.+. +.|..++
T Consensus 335 ~~~~v~~~~g~~~~~~~~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~ 411 (466)
T PRK00654 335 YPGKVGVQIGYDEALAHRIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFD 411 (466)
T ss_pred CCCcEEEEEeCCHHHHHHHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeC
Confidence 4556654 3553222 57788888 774 44665 8889999999999875422 211111000221 6788888
Q ss_pred CcCCHHHHHHHHHHHHc
Q 013836 377 GKLERKEIERAILRVMV 393 (435)
Q Consensus 377 ~~~~~~~l~~~i~~vl~ 393 (435)
. -++++|.++|.++++
T Consensus 412 ~-~d~~~la~~i~~~l~ 427 (466)
T PRK00654 412 D-FNAEDLLRALRRALE 427 (466)
T ss_pred C-CCHHHHHHHHHHHHH
Confidence 6 789999999999886
No 96
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.85 E-value=0.0036 Score=61.77 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=56.0
Q ss_pred cCCceEEeecchh---hhhcCCccceEeec---cCc-cchHHHHhhCCCeeeccCCCchhHHHHHHH---hhhccEEEeC
Q 013836 307 DGRGYIVKWAPQQ---QVLAHPAVGCFWTH---SGW-NSTLESICEGIPMICQPYFGDQMVNSRYVS---HAWRVGLQLE 376 (435)
Q Consensus 307 ~~~~~~~~~~p~~---~ll~~~~v~~~I~H---GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~---~~~G~g~~~~ 376 (435)
.++|.+.+++|+. .+|..+++ +|+- -|. .++.||+++|+|+|+.-..+.-. ..+. +. ..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~---~iv~~~~~g-~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLL---DIVVPWDGG-PTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCch---heeeccCCC-CceEEe-
Confidence 5788899999876 46778888 6642 122 38899999999999865433211 1222 32 566654
Q ss_pred CcCCHHHHHHHHHHHHcCC
Q 013836 377 GKLERKEIERAILRVMVKA 395 (435)
Q Consensus 377 ~~~~~~~l~~~i~~vl~~~ 395 (435)
.++++++++|.++++++
T Consensus 377 --~d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 --STAEEYAEAIEKILSLS 393 (419)
T ss_pred --CCHHHHHHHHHHHHhCC
Confidence 28999999999999863
No 97
>PLN02949 transferase, transferring glycosyl groups
Probab=97.82 E-value=0.0021 Score=63.95 Aligned_cols=111 Identities=19% Similarity=0.156 Sum_probs=68.9
Q ss_pred cCCceEEeecchh---hhhcCCccceEee---ccCcc-chHHHHhhCCCeeeccCCCchhHHHHHHHh-hhc-cEEEeCC
Q 013836 307 DGRGYIVKWAPQQ---QVLAHPAVGCFWT---HSGWN-STLESICEGIPMICQPYFGDQMVNSRYVSH-AWR-VGLQLEG 377 (435)
Q Consensus 307 ~~~~~~~~~~p~~---~ll~~~~v~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~-~~G-~g~~~~~ 377 (435)
.++|.+.+++|+. ++|..+++ +|+ +-|.| ++.||+++|+|+|+....+--.+ .+.+ .-| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~e---IV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMD---IVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcce---eeecCCCCcccccC--
Confidence 5788888999866 46778887 773 34445 79999999999999876431100 1111 001 23222
Q ss_pred cCCHHHHHHHHHHHHcCC-c-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 013836 378 KLERKEIERAILRVMVKA-D-SQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIM 433 (435)
Q Consensus 378 ~~~~~~l~~~i~~vl~~~-~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 433 (435)
-+.++++++|.++++++ + ..++.+++++..+++. .....+++.+.+.
T Consensus 407 -~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~FS--------~e~~~~~~~~~i~ 455 (463)
T PLN02949 407 -TTVEEYADAILEVLRMRETERLEIAAAARKRANRFS--------EQRFNEDFKDAIR 455 (463)
T ss_pred -CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC--------HHHHHHHHHHHHH
Confidence 27899999999999842 1 2345555555544443 4555555555544
No 98
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.72 E-value=0.028 Score=57.53 Aligned_cols=75 Identities=12% Similarity=0.097 Sum_probs=52.9
Q ss_pred CceEEeecchh-hhhcCCccceEee---ccC-ccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHHH
Q 013836 309 RGYIVKWAPQQ-QVLAHPAVGCFWT---HSG-WNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERKE 383 (435)
Q Consensus 309 ~~~~~~~~p~~-~ll~~~~v~~~I~---HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~ 383 (435)
++.+.++.++. ++++.++| ||. +=| -.++.||+++|+|+|+.-..+... +.+. +-|. +. -+.++
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~g-~nGl-l~--~D~Ea 670 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRSF-PNCL-TY--KTSED 670 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eeec-CCeE-ec--CCHHH
Confidence 35556777655 58888998 875 333 458899999999999988765321 2231 3333 22 46899
Q ss_pred HHHHHHHHHcC
Q 013836 384 IERAILRVMVK 394 (435)
Q Consensus 384 l~~~i~~vl~~ 394 (435)
+.++|.++|++
T Consensus 671 fAeAI~~LLsd 681 (794)
T PLN02501 671 FVAKVKEALAN 681 (794)
T ss_pred HHHHHHHHHhC
Confidence 99999999998
No 99
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.72 E-value=0.015 Score=58.50 Aligned_cols=90 Identities=10% Similarity=0.165 Sum_probs=54.2
Q ss_pred hhhhcCCccceEeeccCccchHHHHhhCCCeeecc-CCCchhHHHHHHHh---h--------h--ccEEEeC--C-cCCH
Q 013836 319 QQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQP-YFGDQMVNSRYVSH---A--------W--RVGLQLE--G-KLER 381 (435)
Q Consensus 319 ~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P-~~~DQ~~na~~v~~---~--------~--G~g~~~~--~-~~~~ 381 (435)
.+++..|++ .+.-.|- .+.|+..+|+|||++= ...=-..-|+++.+ . + .+--.+- . ..|+
T Consensus 483 ~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tp 559 (608)
T PRK01021 483 YELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQP 559 (608)
T ss_pred HHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCH
Confidence 478888888 7777764 4679999999998853 33222334555544 0 0 1111122 1 5789
Q ss_pred HHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHH
Q 013836 382 KEIERAILRVMVKAD-SQEMRERATYLNEKVD 412 (435)
Q Consensus 382 ~~l~~~i~~vl~~~~-~~~~~~~a~~l~~~~~ 412 (435)
+.|.+++ ++|.|++ .+++++..+++++.+.
T Consensus 560 e~La~~l-~lL~d~~~r~~~~~~l~~lr~~Lg 590 (608)
T PRK01021 560 EEVAAAL-DILKTSQSKEKQKDACRDLYQAMN 590 (608)
T ss_pred HHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhc
Confidence 9999997 8888732 3344444444444443
No 100
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.71 E-value=0.056 Score=52.47 Aligned_cols=78 Identities=17% Similarity=0.110 Sum_probs=52.6
Q ss_pred cCCceEEeecchhh---hhcCCccceEe------eccCc-cchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeC
Q 013836 307 DGRGYIVKWAPQQQ---VLAHPAVGCFW------THSGW-NSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLE 376 (435)
Q Consensus 307 ~~~~~~~~~~p~~~---ll~~~~v~~~I------~HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~ 376 (435)
.+||.+.+++|+++ ++.++++..+- +.++. +.+.|++++|+|+|..++ ...+.. .+ +..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~-~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRY-ED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhh-cC-cEEEe
Confidence 37899999998764 56788883221 23333 358999999999998763 122233 23 33333
Q ss_pred CcCCHHHHHHHHHHHHcC
Q 013836 377 GKLERKEIERAILRVMVK 394 (435)
Q Consensus 377 ~~~~~~~l~~~i~~vl~~ 394 (435)
. -+.+++.++|.+++.+
T Consensus 324 ~-~d~~~~~~ai~~~l~~ 340 (373)
T cd04950 324 A-DDPEEFVAAIEKALLE 340 (373)
T ss_pred C-CCHHHHHHHHHHHHhc
Confidence 3 4899999999998765
No 101
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=97.69 E-value=0.0024 Score=61.61 Aligned_cols=75 Identities=16% Similarity=0.059 Sum_probs=50.9
Q ss_pred cCCceEEeecc---hhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHHH
Q 013836 307 DGRGYIVKWAP---QQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERKE 383 (435)
Q Consensus 307 ~~~~~~~~~~p---~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~ 383 (435)
.+|+.+.+-++ ...++.++++ +|+.++.|- .||.+.|+|+|.+- .-| ...+ .|..+.+- ..++++
T Consensus 261 ~~~v~l~~~l~~~~~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~--~R~-----e~~~-~g~nvl~v-g~~~~~ 328 (365)
T TIGR03568 261 HPNFRLFKSLGQERYLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG--TRQ-----KGRL-RADSVIDV-DPDKEE 328 (365)
T ss_pred CCCEEEECCCChHHHHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec--CCc-----hhhh-hcCeEEEe-CCCHHH
Confidence 35787775544 4467889999 998886555 99999999999774 211 1112 14333322 368899
Q ss_pred HHHHHHHHHc
Q 013836 384 IERAILRVMV 393 (435)
Q Consensus 384 l~~~i~~vl~ 393 (435)
|.+++.++++
T Consensus 329 I~~a~~~~~~ 338 (365)
T TIGR03568 329 IVKAIEKLLD 338 (365)
T ss_pred HHHHHHHHhC
Confidence 9999999544
No 102
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.62 E-value=0.0043 Score=58.52 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=79.4
Q ss_pred CceEE---eecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHHHHH
Q 013836 309 RGYIV---KWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERKEIE 385 (435)
Q Consensus 309 ~~~~~---~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~ 385 (435)
|+.+. +|.+...++.++.+ ++|-.|. -.-||-..|+|.+++=...++|. +++. |.-..+. .+.+.|.
T Consensus 263 ~v~li~pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v~a--gt~~lvg--~~~~~i~ 332 (383)
T COG0381 263 RVKLIDPLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GVEA--GTNILVG--TDEENIL 332 (383)
T ss_pred cEEEeCCcchHHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc---ceec--CceEEeC--ccHHHHH
Confidence 46664 77788889999988 9998874 46799999999999999999998 2322 3333333 6779999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 013836 386 RAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHI 432 (435)
Q Consensus 386 ~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 432 (435)
+++.+++++ ++..++......-.. +|.++.+.++.+..+.
T Consensus 333 ~~~~~ll~~---~~~~~~m~~~~npYg----dg~as~rIv~~l~~~~ 372 (383)
T COG0381 333 DAATELLED---EEFYERMSNAKNPYG----DGNASERIVEILLNYF 372 (383)
T ss_pred HHHHHHhhC---hHHHHHHhcccCCCc----CcchHHHHHHHHHHHh
Confidence 999999999 777776666655555 4556666666655543
No 103
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.58 E-value=0.016 Score=58.18 Aligned_cols=112 Identities=14% Similarity=0.083 Sum_probs=69.2
Q ss_pred hcCCceEEeecchh---hhhcCCccceEee---ccCcc-chHHHHhhCCCeeeccCCCchhHHHHHHHhhh------ccE
Q 013836 306 VDGRGYIVKWAPQQ---QVLAHPAVGCFWT---HSGWN-STLESICEGIPMICQPYFGDQMVNSRYVSHAW------RVG 372 (435)
Q Consensus 306 ~~~~~~~~~~~p~~---~ll~~~~v~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~------G~g 372 (435)
.+.++.+....+.. .+++.+++ +|. +-|.| +.+||+++|+|.|+....+ ....+.+ . +.|
T Consensus 344 ~~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~-~~~~~~~~~G 416 (473)
T TIGR02095 344 YPGNVRVIIGYDEALAHLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVD-GDPEAESGTG 416 (473)
T ss_pred CCCcEEEEEcCCHHHHHHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEec-CCCCCCCCce
Confidence 35566666555544 47788888 774 23554 7889999999999876532 1112222 2 678
Q ss_pred EEeCCcCCHHHHHHHHHHHHc----CCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 013836 373 LQLEGKLERKEIERAILRVMV----KADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIMS 434 (435)
Q Consensus 373 ~~~~~~~~~~~l~~~i~~vl~----~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 434 (435)
..++. -++++|.++|.+++. | ++.+++. ++.. .+..=+-...+++.++..++
T Consensus 417 ~l~~~-~d~~~la~~i~~~l~~~~~~---~~~~~~~---~~~~---~~~~fsw~~~a~~~~~~Y~~ 472 (473)
T TIGR02095 417 FLFEE-YDPGALLAALSRALRLYRQD---PSLWEAL---QKNA---MSQDFSWDKSAKQYVELYRS 472 (473)
T ss_pred EEeCC-CCHHHHHHHHHHHHHHHhcC---HHHHHHH---HHHH---hccCCCcHHHHHHHHHHHHh
Confidence 88876 789999999999987 5 3333222 2211 12334455566666665544
No 104
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.57 E-value=0.00089 Score=65.17 Aligned_cols=116 Identities=16% Similarity=0.198 Sum_probs=77.6
Q ss_pred hhcCCceEEeecchh---hhhcCCccceEeec----cCc-cchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeC
Q 013836 305 MVDGRGYIVKWAPQQ---QVLAHPAVGCFWTH----SGW-NSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLE 376 (435)
Q Consensus 305 ~~~~~~~~~~~~p~~---~ll~~~~v~~~I~H----GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~ 376 (435)
..+.++.+.+++|++ ++++.+++ +|.- .|. .++.||+++|+|+|+....+ +...+.+. ..|..+.
T Consensus 254 ~l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv~~~-~~G~~l~ 326 (380)
T PRK15484 254 RIGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFVLEG-ITGYHLA 326 (380)
T ss_pred hcCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhcccC-CceEEEe
Confidence 345788888999865 56888998 7753 343 46789999999999977632 33455553 5787553
Q ss_pred CcCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 013836 377 GKLERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIMS 434 (435)
Q Consensus 377 ~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 434 (435)
...+.++|+++|.++++| ++.++-.++.++... +.=+-....+++++.+++
T Consensus 327 ~~~d~~~la~~I~~ll~d---~~~~~~~~~ar~~~~----~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 327 EPMTSDSIISDINRTLAD---PELTQIAEQAKDFVF----SKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred CCCCHHHHHHHHHHHHcC---HHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHH
Confidence 337899999999999999 554332222222222 344556666777776654
No 105
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=97.54 E-value=0.0003 Score=68.13 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=75.4
Q ss_pred CCceEEeecchh---hhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHHHH
Q 013836 308 GRGYIVKWAPQQ---QVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERKEI 384 (435)
Q Consensus 308 ~~~~~~~~~p~~---~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l 384 (435)
+++.+.+.+++. .++..+++ +|+-.|.. +.||+++|+|+|.++-..+++. +.+. |.+..+. .++++|
T Consensus 255 ~~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~--~d~~~i 324 (365)
T TIGR00236 255 KRVHLIEPLEYLDFLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG--TDKENI 324 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC--CCHHHH
Confidence 578777665543 56778888 99977644 7999999999999976555543 2332 7766553 588999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 013836 385 ERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDH 431 (435)
Q Consensus 385 ~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 431 (435)
.+++.++++| ++.+++...-...+. +|+++.+.++.+.++
T Consensus 325 ~~ai~~ll~~---~~~~~~~~~~~~~~g----~~~a~~ri~~~l~~~ 364 (365)
T TIGR00236 325 TKAAKRLLTD---PDEYKKMSNASNPYG----DGEASERIVEELLNH 364 (365)
T ss_pred HHHHHHHHhC---hHHHHHhhhcCCCCc----CchHHHHHHHHHHhh
Confidence 9999999998 676666544333333 566777777766653
No 106
>PLN02316 synthase/transferase
Probab=97.53 E-value=0.15 Score=55.04 Aligned_cols=84 Identities=12% Similarity=0.146 Sum_probs=54.7
Q ss_pred cCCceEEeecchh---hhhcCCccceEee---ccC-ccchHHHHhhCCCeeeccCCC--chhHH-------HHHHHhhhc
Q 013836 307 DGRGYIVKWAPQQ---QVLAHPAVGCFWT---HSG-WNSTLESICEGIPMICQPYFG--DQMVN-------SRYVSHAWR 370 (435)
Q Consensus 307 ~~~~~~~~~~p~~---~ll~~~~v~~~I~---HGG-~gs~~eal~~GvP~v~~P~~~--DQ~~n-------a~~v~~~~G 370 (435)
++++.+....+.. .+++.+++ |+. +=| -.+.+||+++|+|.|+....+ |.-.. +...-.. +
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~ 975 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-P 975 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-C
Confidence 4567766544543 57888888 884 233 348899999999998865422 11110 1100111 4
Q ss_pred cEEEeCCcCCHHHHHHHHHHHHcC
Q 013836 371 VGLQLEGKLERKEIERAILRVMVK 394 (435)
Q Consensus 371 ~g~~~~~~~~~~~l~~~i~~vl~~ 394 (435)
-|...+. .+++.|..+|.+++.+
T Consensus 976 tGflf~~-~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 976 NGFSFDG-ADAAGVDYALNRAISA 998 (1036)
T ss_pred ceEEeCC-CCHHHHHHHHHHHHhh
Confidence 6777776 8899999999999976
No 107
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.51 E-value=0.033 Score=50.83 Aligned_cols=116 Identities=15% Similarity=0.098 Sum_probs=75.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCceEEEccCCCCCCCCCCCCCCCCHHHHHHHH
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS-PNSCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSL 93 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (435)
|||.|- .+..-|+..+-.|..+|.++||+|.+.+-++.. ...-+.-|+.+..+. . .....+...+..+
T Consensus 1 mkVwiD-I~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Ig-k---------~g~~tl~~Kl~~~ 69 (346)
T COG1817 1 MKVWID-IGNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIG-K---------HGGVTLKEKLLES 69 (346)
T ss_pred CeEEEE-cCCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEeec-c---------cCCccHHHHHHHH
Confidence 344433 356679999999999999999999998886542 112233578887777 2 1122333222222
Q ss_pred HHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchHH
Q 013836 94 NAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIAA 153 (435)
Q Consensus 94 ~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~~ 153 (435)
..... .+.++..+ .+||+.+. -.+..+..+|-.+|+|.|++....-..
T Consensus 70 ~eR~~-----~L~ki~~~------~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA~ 117 (346)
T COG1817 70 AERVY-----KLSKIIAE------FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHAE 117 (346)
T ss_pred HHHHH-----HHHHHHhh------cCCceEee-cCCcchhhHHhhcCCceEEecCChhHH
Confidence 11111 13444433 78999999 567889999999999999986665443
No 108
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.49 E-value=0.0021 Score=61.48 Aligned_cols=103 Identities=12% Similarity=0.095 Sum_probs=62.9
Q ss_pred CCceEEeecch---hhhhcCCccceEeeccCccchH-HHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHHH
Q 013836 308 GRGYIVKWAPQ---QQVLAHPAVGCFWTHSGWNSTL-ESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERKE 383 (435)
Q Consensus 308 ~~~~~~~~~p~---~~ll~~~~v~~~I~HGG~gs~~-eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~ 383 (435)
+|+.+.+-+++ ..+|.++++ +|+..| ++. ||.+.|+|+|.+=-..+.+. -+ . .|..+-+. .+.++
T Consensus 239 ~~v~~~~~l~~~~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~iR~~geRqe---~r-~-~~~nvlv~--~~~~~ 307 (346)
T PF02350_consen 239 DNVRLIEPLGYEEYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNIRDSGERQE---GR-E-RGSNVLVG--TDPEA 307 (346)
T ss_dssp TTEEEE----HHHHHHHHHHESE--EEESSH--HHHHHGGGGT--EEECSSS-S-HH---HH-H-TTSEEEET--SSHHH
T ss_pred CCEEEECCCCHHHHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEecCCCCCHH---HH-h-hcceEEeC--CCHHH
Confidence 48888755554 467788999 999999 566 99999999999922222221 11 2 25555533 79999
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 013836 384 IERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRL 428 (435)
Q Consensus 384 l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 428 (435)
|.+++++++.+ .+..++.+....-+. +|.++.+.++.|
T Consensus 308 I~~ai~~~l~~---~~~~~~~~~~~npYg----dG~as~rI~~~L 345 (346)
T PF02350_consen 308 IIQAIEKALSD---KDFYRKLKNRPNPYG----DGNASERIVEIL 345 (346)
T ss_dssp HHHHHHHHHH----HHHHHHHHCS--TT-----SS-HHHHHHHHH
T ss_pred HHHHHHHHHhC---hHHHHhhccCCCCCC----CCcHHHHHHHhh
Confidence 99999999987 566666555444444 566665555543
No 109
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.45 E-value=0.00095 Score=63.70 Aligned_cols=113 Identities=13% Similarity=0.250 Sum_probs=81.6
Q ss_pred hcCCceEEeecchhhhhcC--CccceEeec-------cCcc------chHHHHhhCCCeeeccCCCchhHHHHHHHhhhc
Q 013836 306 VDGRGYIVKWAPQQQVLAH--PAVGCFWTH-------SGWN------STLESICEGIPMICQPYFGDQMVNSRYVSHAWR 370 (435)
Q Consensus 306 ~~~~~~~~~~~p~~~ll~~--~~v~~~I~H-------GG~g------s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G 370 (435)
..+||.+.+|+|++++..+ .+.+++... |.+. -+.+.+++|+|+|+. ++...+..+++. +
T Consensus 205 ~~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~-~ 279 (333)
T PRK09814 205 NSANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN-G 279 (333)
T ss_pred cCCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-C
Confidence 3468889999998876432 133333221 1111 167789999999985 456778889995 9
Q ss_pred cEEEeCCcCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 013836 371 VGLQLEGKLERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDH 431 (435)
Q Consensus 371 ~g~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 431 (435)
+|+.++ +.+++.+++.++. +++...|+++++++++.++ .|.-...++++++..
T Consensus 280 ~G~~v~---~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~----~g~~~~~~~~~~~~~ 332 (333)
T PRK09814 280 LGFVVD---SLEELPEIIDNIT-EEEYQEMVENVKKISKLLR----NGYFTKKALVDAIKE 332 (333)
T ss_pred ceEEeC---CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHhc
Confidence 999998 4678999998854 3335689999999999999 687777777777653
No 110
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.38 E-value=0.056 Score=54.29 Aligned_cols=84 Identities=15% Similarity=0.174 Sum_probs=54.4
Q ss_pred cCCceEEeecchh---hhhcCCccceEeec---cCc-cchHHHHhhCCCeeeccCCC--chhHHHHHHHhhhccEEEeCC
Q 013836 307 DGRGYIVKWAPQQ---QVLAHPAVGCFWTH---SGW-NSTLESICEGIPMICQPYFG--DQMVNSRYVSHAWRVGLQLEG 377 (435)
Q Consensus 307 ~~~~~~~~~~p~~---~ll~~~~v~~~I~H---GG~-gs~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~g~~~~~ 377 (435)
.+|+.+....++. .+++.+++ ++.- -|. .+.+||+++|+|+|+....+ |--.+.....+. |.|..++.
T Consensus 350 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~ 426 (476)
T cd03791 350 PGRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEG 426 (476)
T ss_pred CCcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCC
Confidence 5677765333433 46788888 7742 233 37789999999999876532 211111011122 58988887
Q ss_pred cCCHHHHHHHHHHHHcC
Q 013836 378 KLERKEIERAILRVMVK 394 (435)
Q Consensus 378 ~~~~~~l~~~i~~vl~~ 394 (435)
.++++|.+++.++++.
T Consensus 427 -~~~~~l~~~i~~~l~~ 442 (476)
T cd03791 427 -YNADALLAALRRALAL 442 (476)
T ss_pred -CCHHHHHHHHHHHHHH
Confidence 7899999999999864
No 111
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.34 E-value=0.0023 Score=62.90 Aligned_cols=114 Identities=16% Similarity=0.218 Sum_probs=77.3
Q ss_pred cCCceEEeecchhh---hhcCCccceEeec---------cCc-cchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEE
Q 013836 307 DGRGYIVKWAPQQQ---VLAHPAVGCFWTH---------SGW-NSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGL 373 (435)
Q Consensus 307 ~~~~~~~~~~p~~~---ll~~~~v~~~I~H---------GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~ 373 (435)
.+++.+.+|+|+.+ ++..+++ +|.- -|. .++.||+++|+|+|+....+ ....+.+. ..|+
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~~-~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEAD-KSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcCC-CceE
Confidence 47788899999864 6778888 7752 344 46899999999999976543 33455553 5788
Q ss_pred EeCCcCCHHHHHHHHHHHHc-CCc-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 013836 374 QLEGKLERKEIERAILRVMV-KAD-SQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIMSL 435 (435)
Q Consensus 374 ~~~~~~~~~~l~~~i~~vl~-~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 435 (435)
..+. -+.++++++|.++++ |.+ ..++.+++++. +. +.=+.....+++.+.++++
T Consensus 351 lv~~-~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~---v~----~~f~~~~~~~~l~~~~~~~ 406 (406)
T PRK15427 351 LVPE-NDAQALAQRLAAFSQLDTDELAPVVKRAREK---VE----TDFNQQVINRELASLLQAL 406 (406)
T ss_pred EeCC-CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---HH----HhcCHHHHHHHHHHHHhhC
Confidence 7776 789999999999999 731 22233333322 22 3334567777777776653
No 112
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.25 E-value=0.026 Score=53.29 Aligned_cols=106 Identities=17% Similarity=0.222 Sum_probs=69.4
Q ss_pred hhhcCCccceEeeccCccchHHHHhhCCCeeeccC-CCchhHHHHHHHhhhc-cEE---------EeC---CcCCHHHHH
Q 013836 320 QVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPY-FGDQMVNSRYVSHAWR-VGL---------QLE---GKLERKEIE 385 (435)
Q Consensus 320 ~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~-~~DQ~~na~~v~~~~G-~g~---------~~~---~~~~~~~l~ 385 (435)
+++..|++ .+.-+|-. +.|+..+|+|||+.=- ..=-...|++..+ +. +++ .-+ ...+++.|.
T Consensus 260 ~a~~~aD~--al~aSGT~-tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk-~~yisLpNIi~~~~ivPEliq~~~~pe~la 335 (381)
T COG0763 260 KAFAAADA--ALAASGTA-TLEAALAGTPMVVAYKVKPITYFIAKRLVK-LPYVSLPNILAGREIVPELIQEDCTPENLA 335 (381)
T ss_pred HHHHHhhH--HHHhccHH-HHHHHHhCCCEEEEEeccHHHHHHHHHhcc-CCcccchHHhcCCccchHHHhhhcCHHHHH
Confidence 46667777 66666643 5789999999987531 1111223443333 11 111 111 158899999
Q ss_pred HHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 013836 386 RAILRVMVKAD-SQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIM 433 (435)
Q Consensus 386 ~~i~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 433 (435)
+++..++.|++ ...+++..+.+...++ .+++++.+.+.+.+.++
T Consensus 336 ~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 336 RALEELLLNGDRREALKEKFRELHQYLR----EDPASEIAAQAVLELLL 380 (381)
T ss_pred HHHHHHhcChHhHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHhc
Confidence 99999999942 3467777777777777 67789999999888764
No 113
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.23 E-value=0.0015 Score=55.54 Aligned_cols=89 Identities=17% Similarity=0.257 Sum_probs=67.3
Q ss_pred hcCCceEEeecchh---hhhcCCccceEeec----cCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCc
Q 013836 306 VDGRGYIVKWAPQQ---QVLAHPAVGCFWTH----SGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGK 378 (435)
Q Consensus 306 ~~~~~~~~~~~p~~---~ll~~~~v~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~ 378 (435)
..+++.+.++.++. +++..+++ +|+. |+..++.||+++|+|+|+.- ...+...+.+ .+.|..++.
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~~-~~~g~~~~~- 142 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIIND-GVNGFLFDP- 142 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSGT-TTSEEEEST-
T ss_pred cccccccccccccccccccccccee--ccccccccccccccccccccccceeecc----ccCCceeecc-ccceEEeCC-
Confidence 45788889999833 67788888 8877 66779999999999999754 4555667777 377999987
Q ss_pred CCHHHHHHHHHHHHcCCchHHHHHHHH
Q 013836 379 LERKEIERAILRVMVKADSQEMRERAT 405 (435)
Q Consensus 379 ~~~~~l~~~i~~vl~~~~~~~~~~~a~ 405 (435)
.+.+++.++|.+++++ ++.++...
T Consensus 143 ~~~~~l~~~i~~~l~~---~~~~~~l~ 166 (172)
T PF00534_consen 143 NDIEELADAIEKLLND---PELRQKLG 166 (172)
T ss_dssp TSHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred CCHHHHHHHHHHHHCC---HHHHHHHH
Confidence 6999999999999999 54444433
No 114
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.02 E-value=0.003 Score=62.10 Aligned_cols=83 Identities=18% Similarity=0.178 Sum_probs=59.8
Q ss_pred CCceEEeecchhh---hhcCCccceEeeccC----ccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCC
Q 013836 308 GRGYIVKWAPQQQ---VLAHPAVGCFWTHSG----WNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLE 380 (435)
Q Consensus 308 ~~~~~~~~~p~~~---ll~~~~v~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 380 (435)
+++.+.+|+++.+ ++..+++.+||...- -++++||+++|+|+|+....+ ....+.+. +.|..+....+
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg----~~e~i~~~-~~G~l~~~~~~ 363 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG----TPEIVDNG-GNGLLLSKDPT 363 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC----cHHHhcCC-CcEEEeCCCCC
Confidence 5677889999775 444433333775442 457999999999999865433 44566662 58888776468
Q ss_pred HHHHHHHHHHHHcCC
Q 013836 381 RKEIERAILRVMVKA 395 (435)
Q Consensus 381 ~~~l~~~i~~vl~~~ 395 (435)
.+++.++|.++++|+
T Consensus 364 ~~~la~~I~~ll~~~ 378 (407)
T cd04946 364 PNELVSSLSKFIDNE 378 (407)
T ss_pred HHHHHHHHHHHHhCH
Confidence 999999999999973
No 115
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=96.92 E-value=0.005 Score=59.11 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=63.9
Q ss_pred hhhcCCceEEeecchh---hhhcCCccceEee--ccCcc-chHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCC
Q 013836 304 EMVDGRGYIVKWAPQQ---QVLAHPAVGCFWT--HSGWN-STLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEG 377 (435)
Q Consensus 304 ~~~~~~~~~~~~~p~~---~ll~~~~v~~~I~--HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~ 377 (435)
+...+||.+.+++|+. +++..+++ +|. .-|.| ++.||+++|+|+|+....+ ....+.+. +.|..++.
T Consensus 238 ~~~~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~ 310 (351)
T cd03804 238 AKAGPNVTFLGRVSDEELRDLYARARA--FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEE 310 (351)
T ss_pred hhcCCCEEEecCCCHHHHHHHHHhCCE--EEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCC
Confidence 3456889999999985 56778888 663 34444 5789999999999986543 33345563 68888876
Q ss_pred cCCHHHHHHHHHHHHcCC
Q 013836 378 KLERKEIERAILRVMVKA 395 (435)
Q Consensus 378 ~~~~~~l~~~i~~vl~~~ 395 (435)
-+.++|+++|.++++|.
T Consensus 311 -~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 311 -QTVESLAAAVERFEKNE 327 (351)
T ss_pred -CCHHHHHHHHHHHHhCc
Confidence 78899999999999983
No 116
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=96.80 E-value=0.004 Score=60.26 Aligned_cols=101 Identities=14% Similarity=0.180 Sum_probs=69.8
Q ss_pred cCCceEEeecchh-hhhcCCccceEeec--cCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHHH
Q 013836 307 DGRGYIVKWAPQQ-QVLAHPAVGCFWTH--SGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERKE 383 (435)
Q Consensus 307 ~~~~~~~~~~p~~-~ll~~~~v~~~I~H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~ 383 (435)
.+++.+.++.++. .++..+++-.+.++ |...++.||+++|+|+|+.....- ....+.+. ..|..++. -+.++
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g---~~~~v~~~-~~G~lv~~-~d~~~ 334 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYG---PSEIIEDG-ENGYLVPK-GDIEA 334 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCC---cHHHcccC-CCceEeCC-CcHHH
Confidence 4667777766654 78888888334443 334589999999999999754321 23345553 67888876 78999
Q ss_pred HHHHHHHHHcCCc-hHHHHHHHHHHHHHHH
Q 013836 384 IERAILRVMVKAD-SQEMRERATYLNEKVD 412 (435)
Q Consensus 384 l~~~i~~vl~~~~-~~~~~~~a~~l~~~~~ 412 (435)
|+++|.++++|.+ ...+.+++++.++++.
T Consensus 335 la~~i~~ll~~~~~~~~~~~~a~~~~~~~s 364 (372)
T cd04949 335 LAEAIIELLNDPKLLQKFSEAAYENAERYS 364 (372)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999843 4455556655554443
No 117
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.77 E-value=0.088 Score=46.32 Aligned_cols=50 Identities=24% Similarity=0.173 Sum_probs=37.5
Q ss_pred cCCceEEeecchh----hhhcCCccceEeeccC----ccchHHHHhhCCCeeeccCCCch
Q 013836 307 DGRGYIVKWAPQQ----QVLAHPAVGCFWTHSG----WNSTLESICEGIPMICQPYFGDQ 358 (435)
Q Consensus 307 ~~~~~~~~~~p~~----~ll~~~~v~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ 358 (435)
.+|+.+.++++.. .++..+++ +++-.. .+++.||+++|+|+|+.+....+
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 4678888886332 34445888 888776 78999999999999998875543
No 118
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=96.74 E-value=0.0087 Score=60.24 Aligned_cols=115 Identities=10% Similarity=0.143 Sum_probs=77.3
Q ss_pred cCCceEEeecchhhhhcCCccceEee---ccCc-cchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCC---cC
Q 013836 307 DGRGYIVKWAPQQQVLAHPAVGCFWT---HSGW-NSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEG---KL 379 (435)
Q Consensus 307 ~~~~~~~~~~p~~~ll~~~~v~~~I~---HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~---~~ 379 (435)
.++|.+.++.+..+++..+++ +|. .-|. .++.||+++|+|+|+.-...- +...+.+. .-|..++. .-
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G---~~eiI~~g-~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNYG---NPTFIEDN-KNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCCC---CHHHccCC-CCEEEEeCCcccc
Confidence 466777888887889999998 775 3444 489999999999999765321 22345453 45766652 12
Q ss_pred C----HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 013836 380 E----RKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIMSL 435 (435)
Q Consensus 380 ~----~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 435 (435)
+ .++|+++|.++++++....|.+++.+.++.+. ....++...+.++++
T Consensus 449 d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~fs--------~~~v~~~w~~ll~~~ 500 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNSNDIDAFHEYSYQIAEGFL--------TANIIEKWKKLVREV 500 (500)
T ss_pred chhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHhhC
Confidence 2 78899999999965324455666666555444 466666666666653
No 119
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=96.70 E-value=0.018 Score=54.91 Aligned_cols=73 Identities=23% Similarity=0.282 Sum_probs=60.1
Q ss_pred EeeccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 013836 330 FWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERKEIERAILRVMVKADSQEMRERATYLNE 409 (435)
Q Consensus 330 ~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~ 409 (435)
++-+||.| ..|.+++|+|+|.=|+..-|.+-++++.++ |+|+.++. ++.|.+++..+++| ++.+++..+-+.
T Consensus 327 lv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~-ga~~~v~~---~~~l~~~v~~l~~~---~~~r~~~~~~~~ 398 (419)
T COG1519 327 LVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQA-GAGLQVED---ADLLAKAVELLLAD---EDKREAYGRAGL 398 (419)
T ss_pred ccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhc-CCeEEECC---HHHHHHHHHHhcCC---HHHHHHHHHHHH
Confidence 56688887 679999999999999999999999999995 99999986 88999999999998 444444433333
Q ss_pred H
Q 013836 410 K 410 (435)
Q Consensus 410 ~ 410 (435)
+
T Consensus 399 ~ 399 (419)
T COG1519 399 E 399 (419)
T ss_pred H
Confidence 3
No 120
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.58 E-value=0.039 Score=44.97 Aligned_cols=104 Identities=9% Similarity=0.031 Sum_probs=63.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSLNA 95 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (435)
||+++......| ...+++.|.++||+|++++............++.+..++ .. .......+. +
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~-~~----------~k~~~~~~~-~-- 63 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLP-SP----------RKSPLNYIK-Y-- 63 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEec-CC----------CCccHHHHH-H--
Confidence 567777655555 568899999999999999995433333334677777776 22 111222221 1
Q ss_pred hcchHHHHHHHHHHhccCCcCCCCccEEEEcCch---hhHHHHHHHcC-CCeEEEccc
Q 013836 96 KCIVPFRDCLANKLMSNAQESKDSFACLITDAAW---FIALSVANDFK-LPTIVLLTD 149 (435)
Q Consensus 96 ~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~---~~~~~~A~~~g-iP~v~~~~~ 149 (435)
..+.+.+.+ .+||+|.+-... ..+..++...+ +|.|....+
T Consensus 64 ------~~l~k~ik~-------~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg 108 (139)
T PF13477_consen 64 ------FRLRKIIKK-------EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHG 108 (139)
T ss_pred ------HHHHHHhcc-------CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEecC
Confidence 122333333 679999877643 22344667788 898865443
No 121
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.013 Score=46.45 Aligned_cols=72 Identities=15% Similarity=0.174 Sum_probs=52.3
Q ss_pred hhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCC--------chhHHHHHHHhhhccEEEeCC-cC-CHHHHHHH
Q 013836 318 QQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFG--------DQMVNSRYVSHAWRVGLQLEG-KL-ERKEIERA 387 (435)
Q Consensus 318 ~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~--------DQ~~na~~v~~~~G~g~~~~~-~~-~~~~l~~~ 387 (435)
-+.+-..+++ +|+|+|.||+..++..++|.|++|-.. .|-.-|..+++ ++.=+.... +. =.+.+...
T Consensus 59 iQsli~darI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~spte~~L~a~l~~s 135 (161)
T COG5017 59 IQSLIHDARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSPTELVLQAGLQVS 135 (161)
T ss_pred HHHHhhcceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcCCchhhHHhHhhh
Confidence 3456667888 999999999999999999999999533 47777888888 677777765 21 23344444
Q ss_pred HHHHH
Q 013836 388 ILRVM 392 (435)
Q Consensus 388 i~~vl 392 (435)
+..++
T Consensus 136 ~~~v~ 140 (161)
T COG5017 136 VADVL 140 (161)
T ss_pred hhhhc
Confidence 44444
No 122
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.15 E-value=0.05 Score=54.69 Aligned_cols=81 Identities=17% Similarity=0.223 Sum_probs=58.8
Q ss_pred cCCceEEeecchhhhhcCCccceEeec----cCccchHHHHhhCCCeeeccCCCchhHHHHHHHhh----h-ccEEEeCC
Q 013836 307 DGRGYIVKWAPQQQVLAHPAVGCFWTH----SGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHA----W-RVGLQLEG 377 (435)
Q Consensus 307 ~~~~~~~~~~p~~~ll~~~~v~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~----~-G~g~~~~~ 377 (435)
.+||.+.+...-.++++.+++ +|.- |--+++.||+++|+|+|+... ......+.+. + ..|...+.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHhcCCcccccCCceEEECC
Confidence 467888775555578888888 6643 334589999999999999543 3333344441 1 27777776
Q ss_pred cCCHHHHHHHHHHHHcC
Q 013836 378 KLERKEIERAILRVMVK 394 (435)
Q Consensus 378 ~~~~~~l~~~i~~vl~~ 394 (435)
-+.++++++|.++++|
T Consensus 427 -~d~~~la~ai~~ll~~ 442 (475)
T cd03813 427 -ADPEALARAILRLLKD 442 (475)
T ss_pred -CCHHHHHHHHHHHhcC
Confidence 8899999999999998
No 123
>PRK10125 putative glycosyl transferase; Provisional
Probab=96.13 E-value=1.5 Score=42.97 Aligned_cols=72 Identities=10% Similarity=-0.012 Sum_probs=47.6
Q ss_pred CceEEeecc-h---hhhhcCCccceEeec----cCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCC
Q 013836 309 RGYIVKWAP-Q---QQVLAHPAVGCFWTH----SGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLE 380 (435)
Q Consensus 309 ~~~~~~~~p-~---~~ll~~~~v~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 380 (435)
++...++.. + .+++..+++ ||.- |--.++.||+++|+|+|+....+ -++ .+ +. +-|+.++. -+
T Consensus 287 ~v~~~g~~~~~~~l~~~y~~aDv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG-~~E---iv-~~-~~G~lv~~-~d 357 (405)
T PRK10125 287 NVVNHGFETDKRKLMSALNQMDA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA-ARE---VL-QK-SGGKTVSE-EE 357 (405)
T ss_pred ceEEecCcCCHHHHHHHHHhCCE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC-hHH---hE-eC-CcEEEECC-CC
Confidence 444455543 2 245566777 7752 44457899999999999998865 222 23 32 57888876 68
Q ss_pred HHHHHHHHH
Q 013836 381 RKEIERAIL 389 (435)
Q Consensus 381 ~~~l~~~i~ 389 (435)
.+.|+++++
T Consensus 358 ~~~La~~~~ 366 (405)
T PRK10125 358 VLQLAQLSK 366 (405)
T ss_pred HHHHHhccC
Confidence 888887643
No 124
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=96.07 E-value=0.04 Score=54.12 Aligned_cols=117 Identities=14% Similarity=0.105 Sum_probs=59.8
Q ss_pred cCCceEEeecchhhhh---cCCccceEe---eccCccchHHHHhhCCCeeeccCCCc-hhHHHHHHHhhhccEEEeCCcC
Q 013836 307 DGRGYIVKWAPQQQVL---AHPAVGCFW---THSGWNSTLESICEGIPMICQPYFGD-QMVNSRYVSHAWRVGLQLEGKL 379 (435)
Q Consensus 307 ~~~~~~~~~~p~~~ll---~~~~v~~~I---~HGG~gs~~eal~~GvP~v~~P~~~D-Q~~na~~v~~~~G~g~~~~~~~ 379 (435)
++++.+.++.|..+-| ..+++ +. ..+|..|++|||+.|||+|.+|--.= ...-+..+.. +|+.-.+. .
T Consensus 341 ~~Ri~f~~~~~~~ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA--~ 415 (468)
T PF13844_consen 341 PDRIIFSPVAPREEHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIA--D 415 (468)
T ss_dssp GGGEEEEE---HHHHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB---S
T ss_pred hhhEEEcCCCCHHHHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcC--C
Confidence 4788888888766544 44666 43 56899999999999999999995332 3344456665 67765444 4
Q ss_pred CHHHHHHHHHHHHcCCchHHHHHHH-HHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 013836 380 ERKEIERAILRVMVKADSQEMRERA-TYLNEKVDICLQQGGSSYQSLGRLTDHIM 433 (435)
Q Consensus 380 ~~~~l~~~i~~vl~~~~~~~~~~~a-~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 433 (435)
+.++-.+.--++-+| ++++++. +++++++.+. .-....+.+..+++.+.
T Consensus 416 s~~eYv~~Av~La~D---~~~l~~lR~~Lr~~~~~S--pLfd~~~~ar~lE~a~~ 465 (468)
T PF13844_consen 416 SEEEYVEIAVRLATD---PERLRALRAKLRDRRSKS--PLFDPKRFARNLEAAYR 465 (468)
T ss_dssp SHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHS--GGG-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHH
Confidence 566665555567677 5544332 2333333210 11344556666666554
No 125
>PHA01633 putative glycosyl transferase group 1
Probab=95.91 E-value=0.041 Score=52.11 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=66.8
Q ss_pred hcCCceEE---eecchh---hhhcCCccceEeec---cCc-cchHHHHhhCCCeeeccC------CCch------hHHHH
Q 013836 306 VDGRGYIV---KWAPQQ---QVLAHPAVGCFWTH---SGW-NSTLESICEGIPMICQPY------FGDQ------MVNSR 363 (435)
Q Consensus 306 ~~~~~~~~---~~~p~~---~ll~~~~v~~~I~H---GG~-gs~~eal~~GvP~v~~P~------~~DQ------~~na~ 363 (435)
+++++.+. +++++. ++++.+++ ||.- =|+ .++.||+++|+|+|+.-. ..|+ .+++.
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 45677776 444544 56788888 8853 344 478899999999998633 2332 33332
Q ss_pred HHH--hhhccEEEeCCcCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 013836 364 YVS--HAWRVGLQLEGKLERKEIERAILRVMVKADSQEMRERATYLNEKVD 412 (435)
Q Consensus 364 ~v~--~~~G~g~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~ 412 (435)
... .. |.|..++. .++++++++|.++++..+.+....++++.++++.
T Consensus 277 ~~~~~~~-g~g~~~~~-~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f~ 325 (335)
T PHA01633 277 EYYDKEH-GQKWKIHK-FQIEDMANAIILAFELQDREERSMKLKELAKKYD 325 (335)
T ss_pred HhcCccc-CceeeecC-CCHHHHHHHHHHHHhccChhhhhHHHHHHHHhcC
Confidence 222 32 67777775 9999999999999654332344555666665554
No 126
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.72 E-value=0.02 Score=47.49 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCCCC-CCCCCceEEEccCCCCCCCCCCCCCCCCHHHHHHHHHHhcchHHHHHHHHH
Q 013836 30 PMLQLGSILYSEGFSITIIHTTLNSPNS-CNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSLNAKCIVPFRDCLANK 108 (435)
Q Consensus 30 p~l~La~~L~~rGH~Vt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 108 (435)
-+..|+++|.++||+|+++++....... ....++.+..++ ++.. .........+ ..+...+ ..
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------~~~~~~~~~~-----~~~~~~l-~~ 69 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLP---LPRR-------PWPLRLLRFL-----RRLRRLL-AA 69 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE-----S-S-------SSGGGHCCHH-----HHHHHHC-HH
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEecc---CCcc-------chhhhhHHHH-----HHHHHHH-hh
Confidence 4678999999999999999985332221 223577877777 1111 0001010000 1122222 11
Q ss_pred HhccCCcCCCCccEEEEcCch-hhHHHHHH-HcCCCeEEEcc
Q 013836 109 LMSNAQESKDSFACLITDAAW-FIALSVAN-DFKLPTIVLLT 148 (435)
Q Consensus 109 ~~~~~~~~~~~~Dlvi~D~~~-~~~~~~A~-~~giP~v~~~~ 148 (435)
.+ .+||+|.+.... .....++. ..++|+|....
T Consensus 70 ~~-------~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 70 RR-------ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp CT----------SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred hc-------cCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 22 689999988643 23334445 78999988654
No 127
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=95.58 E-value=0.015 Score=47.08 Aligned_cols=80 Identities=21% Similarity=0.259 Sum_probs=50.5
Q ss_pred cCCceEEeecchh-hhhcCCccceEeec--cC-ccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHH
Q 013836 307 DGRGYIVKWAPQQ-QVLAHPAVGCFWTH--SG-WNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERK 382 (435)
Q Consensus 307 ~~~~~~~~~~p~~-~ll~~~~v~~~I~H--GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~ 382 (435)
..|+.+.+|++.. ++++.+++....+. .| -+++.|++++|+|+|+.+.. .....+. .+.|..+ . -+++
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~-~~~~~~~-~-~~~~ 123 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEE-DGCGVLV-A-NDPE 123 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE--T-T-HH
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheee-cCCeEEE-C-CCHH
Confidence 5688899998644 78888998555442 23 47999999999999998771 2223333 3778777 3 6999
Q ss_pred HHHHHHHHHHcC
Q 013836 383 EIERAILRVMVK 394 (435)
Q Consensus 383 ~l~~~i~~vl~~ 394 (435)
++.++|.++++|
T Consensus 124 ~l~~~i~~l~~d 135 (135)
T PF13692_consen 124 ELAEAIERLLND 135 (135)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC
Confidence 999999999876
No 128
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.53 E-value=0.12 Score=38.65 Aligned_cols=82 Identities=13% Similarity=0.108 Sum_probs=52.5
Q ss_pred ccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhc-cEEEeCCcCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 013836 333 HSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWR-VGLQLEGKLERKEIERAILRVMVKADSQEMRERATYLNEKV 411 (435)
Q Consensus 333 HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G-~g~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~ 411 (435)
+|-..-+.|++++|+|+|.-.. ......+.+ | -++... +.+++.++|..+++|+ +..++-+++..+.+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~~---~~~el~~~i~~ll~~~--~~~~~ia~~a~~~v 77 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITYN---DPEELAEKIEYLLENP--EERRRIAKNARERV 77 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEEC---CHHHHHHHHHHHHCCH--HHHHHHHHHHHHHH
Confidence 5556689999999999999866 333333333 4 233333 8999999999999994 34444455555555
Q ss_pred HHHHhcCCChHHHHHHHH
Q 013836 412 DICLQQGGSSYQSLGRLT 429 (435)
Q Consensus 412 ~~~~~~~g~~~~~~~~~~ 429 (435)
. +.-+....++.++
T Consensus 78 ~----~~~t~~~~~~~il 91 (92)
T PF13524_consen 78 L----KRHTWEHRAEQIL 91 (92)
T ss_pred H----HhCCHHHHHHHHH
Confidence 5 4455555555543
No 129
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.37 E-value=0.21 Score=42.24 Aligned_cols=95 Identities=9% Similarity=0.087 Sum_probs=57.8
Q ss_pred hCCCeEEEEeCCCCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCC-HHHHHHHHHHhcchHHHHHHHHHHhccCCcCCC
Q 013836 40 SEGFSITIIHTTLNSPNSCNYPHFEFCSFSDDGFSETYQPSKVADD-IPALLLSLNAKCIVPFRDCLANKLMSNAQESKD 118 (435)
Q Consensus 40 ~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 118 (435)
++||+|+++|.... .... .|++...+. . +.. ...... ....++....... .+...+.+|++++ .
T Consensus 1 q~gh~v~fl~~~~~-~~~~--~GV~~~~y~-~--~~~---~~~~~~~~~~~~e~~~~rg~-av~~a~~~L~~~G-----f 65 (171)
T PF12000_consen 1 QRGHEVVFLTERKR-PPIP--PGVRVVRYR-P--PRG---PTPGTHPYVRDFEAAVLRGQ-AVARAARQLRAQG-----F 65 (171)
T ss_pred CCCCEEEEEecCCC-CCCC--CCcEEEEeC-C--CCC---CCCCCCcccccHHHHHHHHH-HHHHHHHHHHHcC-----C
Confidence 58999999996332 2222 588888887 2 111 111111 1122222222222 2334456676654 7
Q ss_pred CccEEEEcCchhhHHHHHHHc-CCCeEEEccc
Q 013836 119 SFACLITDAAWFIALSVANDF-KLPTIVLLTD 149 (435)
Q Consensus 119 ~~Dlvi~D~~~~~~~~~A~~~-giP~v~~~~~ 149 (435)
.||+|+.-.-+..++-+-+.+ ++|.+.++-.
T Consensus 66 ~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 66 VPDVIIAHPGWGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred CCCEEEEcCCcchhhhHHHhCCCCcEEEEEEE
Confidence 899999998777777888889 9999987654
No 130
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.92 E-value=0.23 Score=50.01 Aligned_cols=74 Identities=20% Similarity=0.194 Sum_probs=52.7
Q ss_pred cCCceEEeecchh-hhhcCCccceEee---ccC-ccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCH
Q 013836 307 DGRGYIVKWAPQQ-QVLAHPAVGCFWT---HSG-WNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLER 381 (435)
Q Consensus 307 ~~~~~~~~~~p~~-~ll~~~~v~~~I~---HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~ 381 (435)
.++|.+.+|..+. .+|..+++ ||. .-| -+++.||+++|+|+|+.... .+...+.+. ..|..++. -+.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~dG-~nG~LVp~-~D~ 525 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIEG-VSGFILDD-AQT 525 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHcccC-CcEEEECC-CCh
Confidence 4788888886544 67899999 885 345 45999999999999987753 344556664 67888776 445
Q ss_pred HHHHHHH
Q 013836 382 KEIERAI 388 (435)
Q Consensus 382 ~~l~~~i 388 (435)
+.+.+++
T Consensus 526 ~aLa~ai 532 (578)
T PRK15490 526 VNLDQAC 532 (578)
T ss_pred hhHHHHH
Confidence 5555544
No 131
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=94.15 E-value=0.64 Score=46.35 Aligned_cols=104 Identities=15% Similarity=0.159 Sum_probs=71.2
Q ss_pred eecchhh---hhcCCccceEee---ccCcc-chHHHHhhCCC----eeeccCCCchhHHHHHHHhhhccEEEeCCcCCHH
Q 013836 314 KWAPQQQ---VLAHPAVGCFWT---HSGWN-STLESICEGIP----MICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERK 382 (435)
Q Consensus 314 ~~~p~~~---ll~~~~v~~~I~---HGG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~ 382 (435)
+.+++.+ ++..+++ +|. +=|.| +..||+++|+| +|+--..+-... ++-|+.+.. .+.+
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~--------l~~gllVnP-~d~~ 410 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQE--------LNGALLVNP-YDID 410 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHH--------hCCcEEECC-CCHH
Confidence 4566664 4677888 775 44655 77899999999 666555443221 234666676 8899
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 013836 383 EIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIMS 434 (435)
Q Consensus 383 ~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 434 (435)
+++++|.++|+... ++-+++.+++.+.+.. -+...-++.+++.+.+
T Consensus 411 ~lA~aI~~aL~~~~-~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~~ 456 (456)
T TIGR02400 411 GMADAIARALTMPL-EEREERHRAMMDKLRK-----NDVQRWREDFLSDLNS 456 (456)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhC
Confidence 99999999998532 4666777777777652 5666667777776643
No 132
>PRK14098 glycogen synthase; Provisional
Probab=92.64 E-value=0.59 Score=47.10 Aligned_cols=84 Identities=5% Similarity=-0.061 Sum_probs=56.7
Q ss_pred hhcCCceEEeecchh---hhhcCCccceEeecc---Ccc-chHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCC
Q 013836 305 MVDGRGYIVKWAPQQ---QVLAHPAVGCFWTHS---GWN-STLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEG 377 (435)
Q Consensus 305 ~~~~~~~~~~~~p~~---~ll~~~~v~~~I~HG---G~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~ 377 (435)
..++|+.+.++.+.. .+++.+++ |+.-. |.| +.+||+++|+|.|+....+-.........+. +-|...+.
T Consensus 359 ~~~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~-~~G~l~~~ 435 (489)
T PRK14098 359 EHPEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDK-GSGFIFHD 435 (489)
T ss_pred HCCCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCC-CceeEeCC
Confidence 346788888888764 67888998 77532 333 6789999999888876532111000011122 67887776
Q ss_pred cCCHHHHHHHHHHHH
Q 013836 378 KLERKEIERAILRVM 392 (435)
Q Consensus 378 ~~~~~~l~~~i~~vl 392 (435)
.+++.|.++|.+++
T Consensus 436 -~d~~~la~ai~~~l 449 (489)
T PRK14098 436 -YTPEALVAKLGEAL 449 (489)
T ss_pred -CCHHHHHHHHHHHH
Confidence 88999999999876
No 133
>PHA01630 putative group 1 glycosyl transferase
Probab=92.36 E-value=0.41 Score=45.54 Aligned_cols=111 Identities=9% Similarity=0.115 Sum_probs=62.3
Q ss_pred cchh---hhhcCCccceEee---ccC-ccchHHHHhhCCCeeeccCCC--chhH---HHHHHHhh----------hccEE
Q 013836 316 APQQ---QVLAHPAVGCFWT---HSG-WNSTLESICEGIPMICQPYFG--DQMV---NSRYVSHA----------WRVGL 373 (435)
Q Consensus 316 ~p~~---~ll~~~~v~~~I~---HGG-~gs~~eal~~GvP~v~~P~~~--DQ~~---na~~v~~~----------~G~g~ 373 (435)
+|+. .++..+++ +|. ..| -.++.||+++|+|+|+.-..+ |.-. |+..+... .++|.
T Consensus 198 v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~ 275 (331)
T PHA01630 198 LPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGY 275 (331)
T ss_pred CCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccccc
Confidence 5544 45777888 652 333 458999999999999987543 3211 11111000 02344
Q ss_pred EeCCcCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 013836 374 QLEGKLERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIMS 434 (435)
Q Consensus 374 ~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 434 (435)
.++ .+.+++.+++.++|.|.+-+++++..+.-+.... +.-+-...++++++.+++
T Consensus 276 ~v~--~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~----~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 276 FLD--PDIEDAYQKLLEALANWTPEKKKENLEGRAILYR----ENYSYNAIAKMWEKILEK 330 (331)
T ss_pred ccC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHhc
Confidence 433 3678888888888886321244444333333333 344566667777776654
No 134
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=91.23 E-value=1.8 Score=36.11 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=23.4
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 24 FQGHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 24 ~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
..|=-.-...|+++|.++||+|+++++..
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGV 39 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 33667788999999999999999999853
No 135
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=91.19 E-value=1.4 Score=43.40 Aligned_cols=84 Identities=11% Similarity=0.135 Sum_probs=61.2
Q ss_pred hhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEE-eCC-cCCHHHHHHHHHHHHcCCch
Q 013836 320 QVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQ-LEG-KLERKEIERAILRVMVKADS 397 (435)
Q Consensus 320 ~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~-~~~-~~~~~~l~~~i~~vl~~~~~ 397 (435)
.+++++++ +|..= .=++.-|+..|||.+.++. |. -....+.+ +|..-. ++. .++.++|.+.++++++|.
T Consensus 323 ~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y--~~-K~~~~~~~-lg~~~~~~~~~~l~~~~Li~~v~~~~~~r-- 393 (426)
T PRK10017 323 KILGACEL--TVGTR-LHSAIISMNFGTPAIAINY--EH-KSAGIMQQ-LGLPEMAIDIRHLLDGSLQAMVADTLGQL-- 393 (426)
T ss_pred HHHhhCCE--EEEec-chHHHHHHHcCCCEEEeee--hH-HHHHHHHH-cCCccEEechhhCCHHHHHHHHHHHHhCH--
Confidence 77888887 88422 2256678899999999998 33 33334466 677754 444 799999999999999985
Q ss_pred HHHHHHHHHHHHHHH
Q 013836 398 QEMRERATYLNEKVD 412 (435)
Q Consensus 398 ~~~~~~a~~l~~~~~ 412 (435)
+++++..++.-++++
T Consensus 394 ~~~~~~l~~~v~~~r 408 (426)
T PRK10017 394 PALNARLAEAVSRER 408 (426)
T ss_pred HHHHHHHHHHHHHHH
Confidence 677777776666666
No 136
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=89.59 E-value=0.72 Score=37.56 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=38.1
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 12 RNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
|++.+|++.+.++.+|-.-..-++..|.++|++|+++...
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~ 40 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVM 40 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 7899999999999999999999999999999999999985
No 137
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=89.43 E-value=0.63 Score=36.73 Aligned_cols=37 Identities=8% Similarity=0.070 Sum_probs=27.9
Q ss_pred CEEEEEcCCCcc---ChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 15 RRVILFPLPFQG---HINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 15 ~~il~~~~~~~G---Hv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
|||+|+.-|-.+ .-.-.++|+.+-++|||+|.++++.
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcC
Confidence 789999888765 4567899999999999999999994
No 138
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=89.29 E-value=13 Score=33.76 Aligned_cols=39 Identities=8% Similarity=0.038 Sum_probs=27.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 53 (435)
+||||++.--=+. |---+.+|+++|.+.| +|+++.|..+
T Consensus 4 ~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~ 42 (257)
T PRK13932 4 KKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEP 42 (257)
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCC
Confidence 5789988764333 1234677889998888 7999999654
No 139
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=88.83 E-value=3.4 Score=39.61 Aligned_cols=103 Identities=11% Similarity=0.018 Sum_probs=68.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceEEE-ccCCCCCCCCCCCCCCCCHHHHHH
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSE--GFSITIIHTTLNSPNSCNYPHFEFCS-FSDDGFSETYQPSKVADDIPALLL 91 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 91 (435)
|||+++-..+-|++.-..++.+.|.++ +.+|++++.+.........+.++-+- ++ . ... ... +
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~vd~vi~~~-~--~~~------~~~----~- 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMP-L--GHG------ALE----I- 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCCccCEEEecc-c--ccc------hhh----h-
Confidence 689999999999999999999999997 99999999965444444445554322 22 1 000 000 0
Q ss_pred HHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEE
Q 013836 92 SLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIV 145 (435)
Q Consensus 92 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~ 145 (435)
.....+..++++ .++|++|.=.-..-+..++...|+|.-+
T Consensus 67 -------~~~~~l~~~lr~-------~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 -------GERRRLGHSLRE-------KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred -------HHHHHHHHHHHh-------cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 112234566665 6899999654445566777788888654
No 140
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=88.36 E-value=2.6 Score=42.18 Aligned_cols=102 Identities=20% Similarity=0.200 Sum_probs=60.6
Q ss_pred Eeecchhh---hhcCCccceEee---ccCcc-chHHHHhhCCC----eeeccCCCchhHHHHHHHhhhccEEEeCCcCCH
Q 013836 313 VKWAPQQQ---VLAHPAVGCFWT---HSGWN-STLESICEGIP----MICQPYFGDQMVNSRYVSHAWRVGLQLEGKLER 381 (435)
Q Consensus 313 ~~~~p~~~---ll~~~~v~~~I~---HGG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~ 381 (435)
.+++++.+ ++..+++ ||. +-|.| ++.||+++|+| +|+--..+ .... ..-|+.+.. .+.
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G-~~~~-------~~~g~lv~p-~d~ 414 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG-AAEE-------LSGALLVNP-YDI 414 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc-chhh-------cCCCEEECC-CCH
Confidence 36777764 5677888 773 45655 67899999999 44432222 1111 123566665 789
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 013836 382 KEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDH 431 (435)
Q Consensus 382 ~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 431 (435)
++++++|.+++++.. ++.+++.++..+.+. .-+...-++.+++.
T Consensus 415 ~~la~ai~~~l~~~~-~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~ 458 (460)
T cd03788 415 DEVADAIHRALTMPL-EERRERHRKLREYVR-----THDVQAWANSFLDD 458 (460)
T ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHh
Confidence 999999999998631 233333344444433 23445555555544
No 141
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=87.41 E-value=7.2 Score=37.41 Aligned_cols=107 Identities=9% Similarity=0.124 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceE-EEccCCCCCCCCCCCCCCCCHHHH
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSE--GFSITIIHTTLNSPNSCNYPHFEF-CSFSDDGFSETYQPSKVADDIPAL 89 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 89 (435)
+.+||+++-...-|++.-..++.+.|.++ +.+|++++.+...+.....+.++- +.++ .. .......
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~id~vi~~~-~~----------~~~~~~~ 72 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIK-NK----------KAGASEK 72 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccCCCceEEEEec-cc----------cccHHHH
Confidence 35889999999999999999999999998 999999999655444444455532 2233 10 0011111
Q ss_pred HHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEE
Q 013836 90 LLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIV 145 (435)
Q Consensus 90 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~ 145 (435)
+. .+..++.++++ .++|++|.-.-......++...|.|..+
T Consensus 73 ~~--------~~~~l~~~lr~-------~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 73 IK--------NFFSLIKVLRA-------NKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred HH--------HHHHHHHHHhh-------CCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 11 12234556665 6899999654444456677777888755
No 142
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=87.33 E-value=1.8 Score=41.66 Aligned_cols=35 Identities=17% Similarity=0.005 Sum_probs=29.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSE-GFSITIIHT 50 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~r-GH~Vt~~~~ 50 (435)
|||++++ +++.|+.=+.+|.++|.++ +.++.++.|
T Consensus 1 ~~i~~~~-gtr~~~~~~~p~~~~l~~~~~~~~~~~~t 36 (365)
T TIGR00236 1 LKVSIVL-GTRPEAIKMAPLIRALKKYPEIDSYVIVT 36 (365)
T ss_pred CeEEEEE-ecCHHHHHHHHHHHHHhhCCCCCEEEEEe
Confidence 6888877 7999999999999999987 666666666
No 143
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=86.87 E-value=1.3 Score=37.67 Aligned_cols=111 Identities=15% Similarity=0.055 Sum_probs=57.9
Q ss_pred EcCCCccChHHHHHHHHHH-HhC-CCeEEEEeCCCCCCCC--C---C--CCCceEEEccCCCCCCCCCCCCCCCCHHHHH
Q 013836 20 FPLPFQGHINPMLQLGSIL-YSE-GFSITIIHTTLNSPNS--C---N--YPHFEFCSFSDDGFSETYQPSKVADDIPALL 90 (435)
Q Consensus 20 ~~~~~~GHv~p~l~La~~L-~~r-GH~Vt~~~~~~~~~~~--~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (435)
+-.++.||..=++.|.+.+ .++ .++..+++........ . + .....+..++ ... ...... .
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~-r~r-------~v~q~~---~ 71 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIP-RAR-------EVGQSY---L 71 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccc-eEE-------Eechhh---H
Confidence 3447889999999999999 444 5555555553221111 0 0 0001233333 100 000111 1
Q ss_pred HHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCch--hhHHHHHHHc------CCCeEEEccc
Q 013836 91 LSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAW--FIALSVANDF------KLPTIVLLTD 149 (435)
Q Consensus 91 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~--~~~~~~A~~~------giP~v~~~~~ 149 (435)
......... +-..+..+.+ .+||+||+.... .....+|..+ |.+.|.+-+.
T Consensus 72 ~~~~~~l~~-~~~~~~il~r-------~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 72 TSIFTTLRA-FLQSLRILRR-------ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred hhHHHHHHH-HHHHHHHHHH-------hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 111111111 1222344444 689999999744 5556788888 9999886443
No 144
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=86.65 E-value=1.9 Score=43.74 Aligned_cols=92 Identities=17% Similarity=0.184 Sum_probs=62.3
Q ss_pred CCceEEeecc--hh-hhhcCCccceEeecc---CccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCH
Q 013836 308 GRGYIVKWAP--QQ-QVLAHPAVGCFWTHS---GWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLER 381 (435)
Q Consensus 308 ~~~~~~~~~p--~~-~ll~~~~v~~~I~HG---G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~ 381 (435)
.+|.+.++.. +. .++..+.+ +|.=+ |.+|..||+.+|+|+| .......|.+. .=|.-+ -+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li---~d~ 475 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYII---DDI 475 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEe---CCH
Confidence 5677778777 33 67777777 88765 7789999999999999 22223344442 445444 367
Q ss_pred HHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHH
Q 013836 382 KEIERAILRVMVKAD-SQEMRERATYLNEKVD 412 (435)
Q Consensus 382 ~~l~~~i~~vl~~~~-~~~~~~~a~~l~~~~~ 412 (435)
.+|.++|..+|.+.. +..+...|-+.++++.
T Consensus 476 ~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 476 SELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 899999999999842 4445555555554444
No 145
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.73 E-value=3 Score=38.32 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=62.8
Q ss_pred CceEE-eecchhhhhcCCccceEeeccCccc-hHHHHhhCCCeeeccCCCchhHH--HHHHHhhhccEEEeCCcCCHHHH
Q 013836 309 RGYIV-KWAPQQQVLAHPAVGCFWTHSGWNS-TLESICEGIPMICQPYFGDQMVN--SRYVSHAWRVGLQLEGKLERKEI 384 (435)
Q Consensus 309 ~~~~~-~~~p~~~ll~~~~v~~~I~HGG~gs-~~eal~~GvP~v~~P~~~DQ~~n--a~~v~~~~G~g~~~~~~~~~~~l 384 (435)
|..+. .|-...++|.++++ .|-- .|| +-+++=.|+|+|.+|-.+-|+.- |.|-.+-+|+++.+-. -.+..-
T Consensus 295 nc~l~lsqqsfadiLH~ada--algm--AGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-~~aq~a 369 (412)
T COG4370 295 NCSLWLSQQSFADILHAADA--ALGM--AGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-PEAQAA 369 (412)
T ss_pred ceEEEEeHHHHHHHHHHHHH--HHHh--ccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-CchhhH
Confidence 44432 55555577766666 4432 344 34567789999999999999655 5555554688887765 344444
Q ss_pred HHHHHHHHcCCchHHHHHHHH-HHHHHHHH
Q 013836 385 ERAILRVMVKADSQEMRERAT-YLNEKVDI 413 (435)
Q Consensus 385 ~~~i~~vl~~~~~~~~~~~a~-~l~~~~~~ 413 (435)
..+.+++|.| +.+-.+++ .=++++.+
T Consensus 370 ~~~~q~ll~d---p~r~~air~nGqrRiGq 396 (412)
T COG4370 370 AQAVQELLGD---PQRLTAIRHNGQRRIGQ 396 (412)
T ss_pred HHHHHHHhcC---hHHHHHHHhcchhhccC
Confidence 4555569999 78877777 45556663
No 146
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=85.62 E-value=6.5 Score=42.23 Aligned_cols=87 Identities=15% Similarity=0.110 Sum_probs=57.0
Q ss_pred eecchh---hhhcCCccceEee---ccCcc-chHHHHhhCCC---eeeccCCCchhHHHHHHHhhhc-cEEEeCCcCCHH
Q 013836 314 KWAPQQ---QVLAHPAVGCFWT---HSGWN-STLESICEGIP---MICQPYFGDQMVNSRYVSHAWR-VGLQLEGKLERK 382 (435)
Q Consensus 314 ~~~p~~---~ll~~~~v~~~I~---HGG~g-s~~eal~~GvP---~v~~P~~~DQ~~na~~v~~~~G-~g~~~~~~~~~~ 382 (435)
.++|.. +++..++| ||. .-|+| +..|++++|.| +++++-+.- .+. . +| -|+.+.. .+.+
T Consensus 362 ~~v~~~el~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G---~~~---~-l~~~allVnP-~D~~ 431 (797)
T PLN03063 362 CSVDFNYLCALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG---AGQ---S-LGAGALLVNP-WNIT 431 (797)
T ss_pred CCCCHHHHHHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCcC---chh---h-hcCCeEEECC-CCHH
Confidence 345554 56677888 774 44777 67799999999 455443221 111 1 33 5777887 8999
Q ss_pred HHHHHHHHHHc-CCchHHHHHHHHHHHHHHH
Q 013836 383 EIERAILRVMV-KADSQEMRERATYLNEKVD 412 (435)
Q Consensus 383 ~l~~~i~~vl~-~~~~~~~~~~a~~l~~~~~ 412 (435)
+++++|.++|+ +. ++-+++.+++.+.+.
T Consensus 432 ~lA~AI~~aL~m~~--~er~~r~~~~~~~v~ 460 (797)
T PLN03063 432 EVSSAIKEALNMSD--EERETRHRHNFQYVK 460 (797)
T ss_pred HHHHHHHHHHhCCH--HHHHHHHHHHHHhhh
Confidence 99999999998 42 345555665655555
No 147
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=85.17 E-value=3 Score=42.37 Aligned_cols=75 Identities=11% Similarity=0.049 Sum_probs=48.7
Q ss_pred chhhhhcCCccceEee---ccCcc-chHHHHhhCCCeeeccCCCchhHHHHHHHhhh-ccEEEeCC------cCCHHHHH
Q 013836 317 PQQQVLAHPAVGCFWT---HSGWN-STLESICEGIPMICQPYFGDQMVNSRYVSHAW-RVGLQLEG------KLERKEIE 385 (435)
Q Consensus 317 p~~~ll~~~~v~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~-G~g~~~~~------~~~~~~l~ 385 (435)
+..+++..|++ +|. +=|+| +..||+++|+|+|+....+=- .++..+...- ..|+-+.. ..+.++|.
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~-~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFG-CFMEEHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchh-hhhHHHhccCCCceEEEecCCccchHHHHHHHH
Confidence 45577888888 666 45655 899999999999998874321 1122222110 14555542 35678889
Q ss_pred HHHHHHHcC
Q 013836 386 RAILRVMVK 394 (435)
Q Consensus 386 ~~i~~vl~~ 394 (435)
+++.+++..
T Consensus 544 ~~m~~~~~~ 552 (590)
T cd03793 544 QYMYEFCQL 552 (590)
T ss_pred HHHHHHhCC
Confidence 999998865
No 148
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=83.89 E-value=4.6 Score=38.14 Aligned_cols=50 Identities=12% Similarity=0.057 Sum_probs=40.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCce
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSE--GFSITIIHTTLNSPNSCNYPHFE 64 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~ 64 (435)
|||+++-...-|++.-..++.+.|.++ +.+|++++.+.........+.++
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~p~vd 52 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWHPAVD 52 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcCCCcc
Confidence 689999999999999999999999998 99999999964433333334443
No 149
>PLN02939 transferase, transferring glycosyl groups
Probab=83.61 E-value=6.3 Score=42.53 Aligned_cols=83 Identities=12% Similarity=0.132 Sum_probs=55.7
Q ss_pred cCCceEEeecchh---hhhcCCccceEeec---cC-ccchHHHHhhCCCeeeccCCC--chhH--HHHHH-HhhhccEEE
Q 013836 307 DGRGYIVKWAPQQ---QVLAHPAVGCFWTH---SG-WNSTLESICEGIPMICQPYFG--DQMV--NSRYV-SHAWRVGLQ 374 (435)
Q Consensus 307 ~~~~~~~~~~p~~---~ll~~~~v~~~I~H---GG-~gs~~eal~~GvP~v~~P~~~--DQ~~--na~~v-~~~~G~g~~ 374 (435)
.++|.+..+.+.. .+++.+++ ||.- =| -.+.+||++||+|.|+....+ |--. +...+ ... +-|..
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfL 912 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFT 912 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEE
Confidence 4578888887764 58888998 8852 23 348899999999999876533 2111 01111 121 56777
Q ss_pred eCCcCCHHHHHHHHHHHHc
Q 013836 375 LEGKLERKEIERAILRVMV 393 (435)
Q Consensus 375 ~~~~~~~~~l~~~i~~vl~ 393 (435)
.+. .+++.|.++|.+++.
T Consensus 913 f~~-~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 913 FLT-PDEQGLNSALERAFN 930 (977)
T ss_pred ecC-CCHHHHHHHHHHHHH
Confidence 775 788999999988875
No 150
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.46 E-value=1.8 Score=43.68 Aligned_cols=43 Identities=14% Similarity=0.267 Sum_probs=33.2
Q ss_pred cCccchHHHHhhCCCeeeccCCCchhHH-HHHHHhhhccEEEeCC
Q 013836 334 SGWNSTLESICEGIPMICQPYFGDQMVN-SRYVSHAWRVGLQLEG 377 (435)
Q Consensus 334 GG~gs~~eal~~GvP~v~~P~~~DQ~~n-a~~v~~~~G~g~~~~~ 377 (435)
.|..|.++.++.|||||.+|...---.. +..+.. +|+|.-+.+
T Consensus 846 nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hliak 889 (966)
T KOG4626|consen 846 NGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIAK 889 (966)
T ss_pred CCcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHhh
Confidence 4788999999999999999986544444 466777 799986554
No 151
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=82.34 E-value=1.6 Score=37.02 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=25.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
|||.++. +.|++- -.|+++..+|||+||.++-.+
T Consensus 1 mKIaiIg--AsG~~G--s~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIG--ASGKAG--SRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred CeEEEEe--cCchhH--HHHHHHHHhCCCeeEEEEeCh
Confidence 6788775 445543 357899999999999999853
No 152
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=82.22 E-value=12 Score=34.52 Aligned_cols=79 Identities=22% Similarity=0.303 Sum_probs=53.4
Q ss_pred CCceEEeecch---hhhhcCCccceEeec---cCccc-hHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCC
Q 013836 308 GRGYIVKWAPQ---QQVLAHPAVGCFWTH---SGWNS-TLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLE 380 (435)
Q Consensus 308 ~~~~~~~~~p~---~~ll~~~~v~~~I~H---GG~gs-~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 380 (435)
+++.+.++++. ..++..+++ ++.- .|.|. +.||+++|+|+|..... .....+.+ -+.|. +....+
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~~~-~~~g~-~~~~~~ 328 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVVED-GETGL-LVPPGD 328 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHhcC-CCceE-ecCCCC
Confidence 66777888882 256666776 7766 35544 59999999999766553 22233333 13466 443237
Q ss_pred HHHHHHHHHHHHcC
Q 013836 381 RKEIERAILRVMVK 394 (435)
Q Consensus 381 ~~~l~~~i~~vl~~ 394 (435)
.+.+.+++..++++
T Consensus 329 ~~~~~~~i~~~~~~ 342 (381)
T COG0438 329 VEELADALEQLLED 342 (381)
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999999998
No 153
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=81.21 E-value=18 Score=32.92 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=24.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
|+|+++ +++|. -..|+++|.++||+|+..+..
T Consensus 1 m~ILvl--GGT~e---gr~la~~L~~~g~~v~~s~~t 32 (256)
T TIGR00715 1 MTVLLM--GGTVD---SRAIAKGLIAQGIEILVTVTT 32 (256)
T ss_pred CeEEEE--echHH---HHHHHHHHHhCCCeEEEEEcc
Confidence 566655 34553 678999999999999988774
No 154
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=80.52 E-value=3.4 Score=33.19 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=30.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
|||++...|+.+=+. ...+.++|.++|++|.++.++
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECC
Confidence 688888888776666 999999999999999999995
No 155
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=80.36 E-value=5.9 Score=33.05 Aligned_cols=56 Identities=13% Similarity=0.209 Sum_probs=44.0
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEcc
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFS 69 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~ 69 (435)
..|||++.-.|+-|--.-.+.+++.|.++|+.|-=+-++ ........-|++...+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~-EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITP-EVREGGKRIGFKIVDLA 59 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEee-eeecCCeEeeeEEEEcc
Confidence 369999999999999999999999999999999866663 22222233578887777
No 156
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=80.10 E-value=46 Score=30.40 Aligned_cols=37 Identities=8% Similarity=0.063 Sum_probs=25.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 53 (435)
|||++.--=+. |-.-+..|+++|.+.| +|+++.|..+
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~e 37 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETP 37 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCC
Confidence 56666554333 2244778899998888 7999999654
No 157
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=79.42 E-value=38 Score=31.46 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=37.1
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 013836 14 GRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPN 56 (435)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~ 56 (435)
...|.+.=.|+-|--.-.=+|.++|.++||+|-++.-++-.+.
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~ 93 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF 93 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCC
Confidence 4678888899999999999999999999999999998754433
No 158
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=78.88 E-value=5.5 Score=37.55 Aligned_cols=109 Identities=11% Similarity=0.027 Sum_probs=65.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCce-EEEccCCCCCCCCCCCCCCCCHHHHHHH
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYSE--GFSITIIHTTLNSPNSCNYPHFE-FCSFSDDGFSETYQPSKVADDIPALLLS 92 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (435)
||+++-...-|++.-..++.++|.++ +.+|++++.+.........+.++ ++.++ .. .. . .. .+.
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~p~vd~v~~~~-~~--~~----~--~~---~~~- 67 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLHPAVDEVIPVA-LR--RW----R--KT---LFS- 67 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcCCCccEEEEec-hh--hh----h--hc---ccc-
Confidence 58888888889999999999999998 99999999965544444445564 44444 11 00 0 00 000
Q ss_pred HHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEE
Q 013836 93 LNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVL 146 (435)
Q Consensus 93 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~ 146 (435)
......+..+.+.+.+ .++|++|.-........++...+.+.+.+
T Consensus 68 --~~~~~~~~~~~~~lr~-------~~yD~vi~~~~~~~s~~l~~~~~~~r~g~ 112 (319)
T TIGR02193 68 --AATWREIKALRALLRA-------ERYDAVIDAQGLIKSALVARMARGPRHGF 112 (319)
T ss_pred --chhHHHHHHHHHHHhh-------ccchhhhhhhhhHHHHHHHHhhCCceecC
Confidence 0001122333444544 68999885443444556666666444443
No 159
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=78.85 E-value=3.5 Score=39.86 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=66.1
Q ss_pred CCceEE-eecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCC------cCC
Q 013836 308 GRGYIV-KWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEG------KLE 380 (435)
Q Consensus 308 ~~~~~~-~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~------~~~ 380 (435)
++++.. ...+-.++|..+++ +||-- ...+.|.+..++|+|....-.|.... + .|.-..... --+
T Consensus 252 ~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~-----~-rg~~~~~~~~~pg~~~~~ 322 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEK-----E-RGFYFDYEEDLPGPIVYN 322 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTT-----T-SSBSS-TTTSSSS-EESS
T ss_pred CcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhh-----c-cCCCCchHhhCCCceeCC
Confidence 455544 44466799999999 99998 45889999999999988876665532 2 244444321 467
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 013836 381 RKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGR 427 (435)
Q Consensus 381 ~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 427 (435)
.++|.++|..++++. ..++++-++..+++-. -.+|.++.+.++.
T Consensus 323 ~~eL~~~i~~~~~~~--~~~~~~~~~~~~~~~~-~~Dg~s~eri~~~ 366 (369)
T PF04464_consen 323 FEELIEAIENIIENP--DEYKEKREKFRDKFFK-YNDGNSSERIVNY 366 (369)
T ss_dssp HHHHHHHHTTHHHHH--HHTHHHHHHHHHHHST-T--S-HHHHHHHH
T ss_pred HHHHHHHHHhhhhCC--HHHHHHHHHHHHHhCC-CCCchHHHHHHHH
Confidence 899999999999873 4566777777777742 2234444444433
No 160
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=78.34 E-value=3.2 Score=32.67 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=32.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
|+++.+.++..|.....-++..|.++|++|+.....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 588999999999999999999999999999888763
No 161
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=78.13 E-value=53 Score=29.76 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=24.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 53 (435)
||||+.--=+. |-.-+.+|+++|.+. |+|+++.|..+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~ 37 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRE 37 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCC
Confidence 56666553222 223367888999988 79999999644
No 162
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=78.11 E-value=18 Score=34.44 Aligned_cols=105 Identities=10% Similarity=0.114 Sum_probs=68.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCce-EEEccCCCCCCCCCCCCCCCCHHHHHHH
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYSE--GFSITIIHTTLNSPNSCNYPHFE-FCSFSDDGFSETYQPSKVADDIPALLLS 92 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (435)
||+++-...-|++.-..++.+.|.++ +.+|++++.+.........+.++ ++.++ .. ....... .
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~-~~--------~~~~~~~----~ 67 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSENPDINALYGLD-RK--------KAKAGER----K 67 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcCCCccEEEEeC-hh--------hhcchHH----H
Confidence 58888888899999999999999997 99999999965444444445553 33344 11 0000000 0
Q ss_pred HHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEE
Q 013836 93 LNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIV 145 (435)
Q Consensus 93 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~ 145 (435)
+. ....++.++.+ .++|++|.-.....+..++...|.|.-+
T Consensus 68 ~~-----~~~~l~~~lr~-------~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 68 LA-----NQFHLIKVLRA-------NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred HH-----HHHHHHHHHHh-------CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 10 11223455655 6899999654445567888888999755
No 163
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=77.98 E-value=4.8 Score=35.00 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=28.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~ 54 (435)
||||+.---+. +-.-+..|.++|.+.||+|+++.|..+.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~ 39 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQ 39 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSST
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 67777775544 3445778899997778999999997654
No 164
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=77.47 E-value=56 Score=29.67 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=24.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~ 54 (435)
|||++.--=+. |---+..|+++|.+ +|+|+++.|..+.
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~ 38 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQR 38 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCC
Confidence 56666553322 11227788888865 7899999996543
No 165
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=77.15 E-value=57 Score=29.60 Aligned_cols=37 Identities=8% Similarity=0.039 Sum_probs=24.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 53 (435)
||||+.--=+. |---..+|+++|. ++|+|+++.|..+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~-~~~~V~VvAP~~~ 37 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLS-EKHEVFVVAPDKE 37 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHH-hCCcEEEEccCCC
Confidence 56666654333 2233677788886 4689999999644
No 166
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=76.40 E-value=7.3 Score=28.18 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=32.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 14 GRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
..-++++..+...|..-+-.+|+.|.++|..|...-.
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 4778888888999999999999999999999986655
No 167
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=75.80 E-value=25 Score=31.74 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=24.6
Q ss_pred CEEEEEcCCCccChHH-HHHHHHHHHhCCCeEEEEeCCCCC
Q 013836 15 RRVILFPLPFQGHINP-MLQLGSILYSEGFSITIIHTTLNS 54 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p-~l~La~~L~~rGH~Vt~~~~~~~~ 54 (435)
|||++.-- .|=..| ..+|++.|. .+++|+++.|..+.
T Consensus 1 mrILlTND--DGi~a~Gi~aL~~al~-~~~dV~VVAP~~~q 38 (252)
T COG0496 1 MRILLTND--DGIHAPGIRALARALR-EGADVTVVAPDREQ 38 (252)
T ss_pred CeEEEecC--CccCCHHHHHHHHHHh-hCCCEEEEccCCCC
Confidence 55655543 232333 567788887 99999999996543
No 168
>PRK14099 glycogen synthase; Provisional
Probab=75.35 E-value=4.5 Score=40.78 Aligned_cols=84 Identities=12% Similarity=0.222 Sum_probs=48.9
Q ss_pred cCCc-eEEeecchh-hhh-cCCccceEee---ccCcc-chHHHHhhCCCeeeccCCC--chhHHHHH---HHhhhccEEE
Q 013836 307 DGRG-YIVKWAPQQ-QVL-AHPAVGCFWT---HSGWN-STLESICEGIPMICQPYFG--DQMVNSRY---VSHAWRVGLQ 374 (435)
Q Consensus 307 ~~~~-~~~~~~p~~-~ll-~~~~v~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~~---v~~~~G~g~~ 374 (435)
++++ .+.+|-... .++ +.+++ ||. +=|.| +.+||+++|.|.|+....+ |--..... .... +.|..
T Consensus 349 ~~~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l 425 (485)
T PRK14099 349 PGQIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQ 425 (485)
T ss_pred CCCEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEE
Confidence 4555 345663222 233 45777 774 45555 6689999998777654322 21111100 0010 46787
Q ss_pred eCCcCCHHHHHHHHHH---HHcC
Q 013836 375 LEGKLERKEIERAILR---VMVK 394 (435)
Q Consensus 375 ~~~~~~~~~l~~~i~~---vl~~ 394 (435)
.+. .++++|.++|.+ +++|
T Consensus 426 ~~~-~d~~~La~ai~~a~~l~~d 447 (485)
T PRK14099 426 FSP-VTADALAAALRKTAALFAD 447 (485)
T ss_pred eCC-CCHHHHHHHHHHHHHHhcC
Confidence 776 789999999997 5666
No 169
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=74.82 E-value=43 Score=30.23 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=25.1
Q ss_pred CEEEEEcCCCccChHH-HHHHHHHHHhCCCeEEEEeCCCCC
Q 013836 15 RRVILFPLPFQGHINP-MLQLGSILYSEGFSITIIHTTLNS 54 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p-~l~La~~L~~rGH~Vt~~~~~~~~ 54 (435)
||||+.-- .|-.-| +.+|+++|.+.| +|+++.|..+.
T Consensus 1 M~ILltND--DGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~ 38 (244)
T TIGR00087 1 MKILLTND--DGIHSPGIRALYQALKELG-EVTVVAPARQR 38 (244)
T ss_pred CeEEEECC--CCCCCHhHHHHHHHHHhCC-CEEEEeCCCCc
Confidence 56665543 233333 677889999888 89999996543
No 170
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=74.34 E-value=19 Score=35.76 Aligned_cols=89 Identities=8% Similarity=0.014 Sum_probs=62.0
Q ss_pred CCceEE-eecchh--hhhcCCccceEeeccCc--cchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHH
Q 013836 308 GRGYIV-KWAPQQ--QVLAHPAVGCFWTHSGW--NSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERK 382 (435)
Q Consensus 308 ~~~~~~-~~~p~~--~ll~~~~v~~~I~HGG~--gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~ 382 (435)
+|+.+. ++.++. +++..|++-+-|+||+- .++.||+.+|+|++..=....... .+.. |-.... -+.+
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~~---~i~~----g~l~~~-~~~~ 399 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNRD---FIAS----ENIFEH-NEVD 399 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCcc---cccC----CceecC-CCHH
Confidence 666665 667733 89999999889998654 589999999999998765433221 1111 333343 6789
Q ss_pred HHHHHHHHHHcCCchH-HHHHHHHHH
Q 013836 383 EIERAILRVMVKADSQ-EMRERATYL 407 (435)
Q Consensus 383 ~l~~~i~~vl~~~~~~-~~~~~a~~l 407 (435)
++.++|.++|.+ + .++++..+-
T Consensus 400 ~m~~~i~~lL~d---~~~~~~~~~~q 422 (438)
T TIGR02919 400 QLISKLKDLLND---PNQFRELLEQQ 422 (438)
T ss_pred HHHHHHHHHhcC---HHHHHHHHHHH
Confidence 999999999998 5 444444433
No 171
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=73.99 E-value=5.6 Score=34.23 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCCC
Q 013836 31 MLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 31 ~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
-..||+++..+|++||++..+.
T Consensus 32 G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 32 GAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHHHHHHHCCCEEEEEecCc
Confidence 4689999999999999999953
No 172
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=73.52 E-value=40 Score=31.86 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=32.8
Q ss_pred CEEEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 013836 15 RRVILFPLPFQ-GHINPMLQLGSILYSEGFSITIIHTTLNS 54 (435)
Q Consensus 15 ~~il~~~~~~~-GHv~p~l~La~~L~~rGH~Vt~~~~~~~~ 54 (435)
+||+|++.=+. |--.-.-++|-.|++.|..|.++++++.+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAh 42 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAH 42 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCC
Confidence 67888876555 88888889999999999998888886543
No 173
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=72.17 E-value=6.4 Score=32.04 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=36.6
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 12 RNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
++|.||++.+.+..||-.-.--+++.|++.|.+|.....
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCC
Confidence 589999999999889999999999999999999998776
No 174
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=71.84 E-value=64 Score=27.72 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=31.5
Q ss_pred cChH-HHHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCceEEEcc
Q 013836 26 GHIN-PMLQLGSILYSEGFSITIIHTTLNSPN-SCNYPHFEFCSFS 69 (435)
Q Consensus 26 GHv~-p~l~La~~L~~rGH~Vt~~~~~~~~~~-~~~~~~~~~~~~~ 69 (435)
|=+- ..-.|+..|+++||+||+.|....... ..+..|++...++
T Consensus 17 GGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~ 62 (185)
T PF09314_consen 17 GGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIP 62 (185)
T ss_pred CcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeC
Confidence 4443 345688999999999999999644432 3445788888888
No 175
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=71.58 E-value=6.1 Score=34.25 Aligned_cols=39 Identities=18% Similarity=0.115 Sum_probs=30.3
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
+.+||++--.|+.|=+.-...|+++|.++||+|.++.++
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 457777776665544443799999999999999999995
No 176
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=71.58 E-value=26 Score=32.17 Aligned_cols=102 Identities=12% Similarity=0.053 Sum_probs=64.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceEE-EccCCCCCCCCCCCCCCCCHHHHHHH
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYSE--GFSITIIHTTLNSPNSCNYPHFEFC-SFSDDGFSETYQPSKVADDIPALLLS 92 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (435)
||+++-..+-|++.-+.++.++|.++ +-+|++++.+.........+.++-+ .++ . . ......
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p~id~v~~~~-~----~----~~~~~~------ 65 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMPEVDRVIVLP-K----K----HGKLGL------ 65 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCCccCEEEEcC-C----c----ccccch------
Confidence 68888888889999999999999998 5899999996443333333444322 222 1 0 000011
Q ss_pred HHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEE
Q 013836 93 LNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIV 145 (435)
Q Consensus 93 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~ 145 (435)
..+.+++.++.+ .++|+++.=........++...+++...
T Consensus 66 ------~~~~~~~~~l~~-------~~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 66 ------GARRRLARALRR-------RRYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred ------HHHHHHHHHHhh-------cCCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 122344566655 6799999765554555566677777654
No 177
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=70.32 E-value=21 Score=33.78 Aligned_cols=101 Identities=12% Similarity=0.076 Sum_probs=65.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceE-EEccCCCCCCCCCCCCCCCCHHHHHHH
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYSE--GFSITIIHTTLNSPNSCNYPHFEF-CSFSDDGFSETYQPSKVADDIPALLLS 92 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (435)
||+++-..+-|++.-..++.+.|.+. +.+|++++.+.........+.++- +.++ .. .. ... +
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~id~v~~~~-~~--~~------~~~---~--- 65 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMPEIRQAIDMP-LG--HG------ALE---L--- 65 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcCchhceeeecC-Cc--cc------chh---h---
Confidence 58889888899999999999999998 999999998644333333344432 2222 10 00 000 0
Q ss_pred HHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeE
Q 013836 93 LNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTI 144 (435)
Q Consensus 93 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v 144 (435)
.....+..++.+ .++|++|.-.-...+..++...|+|.-
T Consensus 66 ------~~~~~~~~~lr~-------~~yD~vi~l~~~~~s~ll~~~~~~~~r 104 (334)
T TIGR02195 66 ------TERRRLGRSLRE-------ERYDQAIVLPNSLKSALIPFFAGIPHR 104 (334)
T ss_pred ------hHHHHHHHHHhh-------cCCCEEEECCCCHHHHHHHHHcCCCce
Confidence 011234455655 689999986555566677777788754
No 178
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=69.82 E-value=50 Score=30.20 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=39.5
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEccCCCCC
Q 013836 12 RNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSDDGFS 74 (435)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (435)
|.+|||+++..++...-. ...++|.++|.+|.++.............+++..-+| .++.
T Consensus 1 ~~~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvip-GGfs 59 (261)
T PRK01175 1 MESIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIP-GGFS 59 (261)
T ss_pred CCCCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeeccccccccchhhCCEEEEC-CCCC
Confidence 567899999998885433 5578888899999998763211111222457777788 5543
No 179
>PRK14099 glycogen synthase; Provisional
Probab=69.39 E-value=14 Score=37.15 Aligned_cols=41 Identities=15% Similarity=0.104 Sum_probs=31.4
Q ss_pred CCCCEEEEEcCC------CccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 12 RNGRRVILFPLP------FQGHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 12 ~~~~~il~~~~~------~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
|++|||++++.= +.|=-...-+|.++|+++||+|.++.|..
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 678999998742 12333446788999999999999999954
No 180
>PRK11519 tyrosine kinase; Provisional
Probab=68.61 E-value=1.1e+02 Score=32.63 Aligned_cols=40 Identities=13% Similarity=0.229 Sum_probs=31.8
Q ss_pred CCEEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 013836 14 GRRVILFPL--PFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (435)
Q Consensus 14 ~~~il~~~~--~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 53 (435)
+.|+++++. |+.|--.-...||..|++.|++|.++-.+..
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr 566 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMR 566 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 446666655 4558888899999999999999999987643
No 181
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=67.56 E-value=29 Score=36.99 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=63.4
Q ss_pred EEeecchhh---hhcCCccceEeec---cCcc-chHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHHHH
Q 013836 312 IVKWAPQQQ---VLAHPAVGCFWTH---SGWN-STLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERKEI 384 (435)
Q Consensus 312 ~~~~~p~~~---ll~~~~v~~~I~H---GG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l 384 (435)
+.+++++.+ ++..+++ |+.- -|.| +..|++++|+|-...|+..+----+. + +.-|+.+.. .+.+++
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~---~-l~~~llv~P-~d~~~l 418 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA---E-LAEALLVNP-NDIEGI 418 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhH---H-hCcCeEECC-CCHHHH
Confidence 447788775 5567887 6653 3544 78899999776222222221100011 2 233677776 889999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 013836 385 ERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIM 433 (435)
Q Consensus 385 ~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 433 (435)
+++|.++|+... ++.+++.+++.+.+. .-+...-++.+++.+.
T Consensus 419 a~ai~~~l~~~~-~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~ 461 (726)
T PRK14501 419 AAAIKRALEMPE-EEQRERMQAMQERLR-----RYDVHKWASDFLDELR 461 (726)
T ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHH
Confidence 999999998521 345555555555543 2345555555555443
No 182
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=66.63 E-value=27 Score=33.18 Aligned_cols=106 Identities=12% Similarity=0.059 Sum_probs=69.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCHHHHHH
Q 013836 14 GRRVILFPLPFQGHINPMLQLGSILYSE--GFSITIIHTTLNSPNSCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLL 91 (435)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (435)
.|||+++-...-||+.-.+++...|.++ +.+++|+++..........+.++-+..- .. .. ..
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p~I~~vi~~-~~--~~-------~~------ 64 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNPEIDKVIII-DK--KK-------KG------ 64 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcChHhhhhccc-cc--cc-------cc------
Confidence 4899999998889999999999999999 6999999996443333333333322211 00 00 11
Q ss_pred HHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEE
Q 013836 92 SLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVL 146 (435)
Q Consensus 92 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~ 146 (435)
........+...+.+ .++|+||.=.-..-...++...++|.-.-
T Consensus 65 ----~~~~~~~~l~~~lr~-------~~yD~vidl~~~~ksa~l~~~~~~~~r~g 108 (334)
T COG0859 65 ----LGLKERLALLRTLRK-------ERYDAVIDLQGLLKSALLALLLGIPFRIG 108 (334)
T ss_pred ----cchHHHHHHHHHhhc-------cCCCEEEECcccHHHHHHHHHhCCCcccc
Confidence 111222334555554 67999997665566677777888887653
No 183
>PRK09620 hypothetical protein; Provisional
Probab=66.18 E-value=20 Score=32.00 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCCccChHH------------HHHHHHHHHhCCCeEEEEeCC
Q 013836 13 NGRRVILFPLPFQGHINP------------MLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p------------~l~La~~L~~rGH~Vt~~~~~ 51 (435)
+.++|++...|+.=.+.| -..||++|.++|++|+++...
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 456666665554433333 267899999999999999874
No 184
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=65.52 E-value=17 Score=36.21 Aligned_cols=42 Identities=26% Similarity=0.513 Sum_probs=36.2
Q ss_pred CCCCCEEEEEcCCCccChHHH------------HHHHHHHHhCCCeEEEEeCCC
Q 013836 11 PRNGRRVILFPLPFQGHINPM------------LQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 11 ~~~~~~il~~~~~~~GHv~p~------------l~La~~L~~rGH~Vt~~~~~~ 52 (435)
+.+.+||++...|++=-+.|. .+||+++..+|++||+++.+.
T Consensus 253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 478899999998888888774 689999999999999999854
No 185
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=65.22 E-value=70 Score=30.40 Aligned_cols=60 Identities=18% Similarity=0.162 Sum_probs=48.2
Q ss_pred CCCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC--CCCCCCCCCceEEEcc
Q 013836 10 LPRNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN--SPNSCNYPHFEFCSFS 69 (435)
Q Consensus 10 ~~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~--~~~~~~~~~~~~~~~~ 69 (435)
...+|.++.++..|--||--.+.==|..|++.|.+|.+++--.. ....-+.++++++.++
T Consensus 8 ~~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~hprI~ih~m~ 69 (444)
T KOG2941|consen 8 NKSKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNHPRIRIHGMP 69 (444)
T ss_pred cccccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcCCceEEEeCC
Confidence 34467889999999999999999999999999999999988422 2223356889999998
No 186
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=64.92 E-value=15 Score=28.79 Aligned_cols=36 Identities=28% Similarity=0.359 Sum_probs=32.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
.|+++.+.+..-|-.-..-|+..|.++||+|.++..
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~ 36 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDA 36 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEES
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECC
Confidence 478999999999999999999999999999998865
No 187
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=63.66 E-value=16 Score=31.94 Aligned_cols=39 Identities=13% Similarity=0.115 Sum_probs=35.6
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
++.|+++.+.++..|-....=++..|.++|++|+.+...
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~ 119 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD 119 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC
Confidence 467999999999999999999999999999999988864
No 188
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=63.21 E-value=1.2e+02 Score=27.67 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=28.5
Q ss_pred CCEEEEEcCCC--ccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 14 GRRVILFPLPF--QGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 14 ~~~il~~~~~~--~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
..|++.++.+. .|--.-...||..|++.|++|.++-.+
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 34555555443 377777889999999999999999665
No 189
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=63.07 E-value=23 Score=33.36 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=31.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 17 il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
|.=++.|+.|-.--.+.|+++|.+||..+-+++-.+
T Consensus 52 VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGY 87 (336)
T COG1663 52 VGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGY 87 (336)
T ss_pred EccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCc
Confidence 445788999999999999999999999999998854
No 190
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=62.63 E-value=1e+02 Score=26.69 Aligned_cols=101 Identities=11% Similarity=0.072 Sum_probs=63.1
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC------CCCCCCceEEEccCCCCCCCCCCCCCCCC
Q 013836 12 RNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPN------SCNYPHFEFCSFSDDGFSETYQPSKVADD 85 (435)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (435)
|.+=.|.+++..+.|-....+.+|-+.+.+|++|.++---..... .....++.+...+ .++.-. . .+
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g-~~~~~~----~--~~ 92 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMG-TGFTWE----T--QD 92 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECC-CCCccc----C--CC
Confidence 456788999999999999999999999999999999876321101 1112467887777 432211 0 11
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchh
Q 013836 86 IPALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWF 130 (435)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~ 130 (435)
..... ..+...++...+.+.. .++|+||.|-...
T Consensus 93 ~~e~~----~~~~~~~~~a~~~l~~-------~~ydlvVLDEi~~ 126 (191)
T PRK05986 93 RERDI----AAAREGWEEAKRMLAD-------ESYDLVVLDELTY 126 (191)
T ss_pred cHHHH----HHHHHHHHHHHHHHhC-------CCCCEEEEehhhH
Confidence 11111 2222333334444443 6799999997553
No 191
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=62.55 E-value=16 Score=31.70 Aligned_cols=41 Identities=12% Similarity=-0.012 Sum_probs=37.1
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 12 RNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
..+.+|++.+.++..|-....-++..|..+|++|++++..-
T Consensus 82 ~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~v 122 (197)
T TIGR02370 82 EVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDV 122 (197)
T ss_pred CCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCC
Confidence 34679999999999999999999999999999999999853
No 192
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=61.96 E-value=41 Score=29.76 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=33.8
Q ss_pred CEEEEEcCC--CccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 013836 15 RRVILFPLP--FQGHINPMLQLGSILYSEGFSITIIHTTLNSPN 56 (435)
Q Consensus 15 ~~il~~~~~--~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~ 56 (435)
.++.++++| +-|-..-.-.|+-.|+++|+.|.++-.+...+.
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRN 45 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRN 45 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchh
Confidence 366777776 338899999999999999999999998754443
No 193
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=60.91 E-value=39 Score=28.12 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=24.7
Q ss_pred CCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 22 LPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 22 ~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
.+..|--.-.+.|++.|.++|.+|.++-+
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~kP 34 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYYKP 34 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 34558888999999999999999999754
No 194
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=60.38 E-value=12 Score=35.23 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=29.6
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 11 PRNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 11 ~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
+|.+|||+++=.|+.| ..+|..|.+.||+|+++.-.
T Consensus 2 ~~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 2 DSETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CCcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeC
Confidence 5678999999777766 35678899999999999874
No 195
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=60.03 E-value=44 Score=33.37 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=28.0
Q ss_pred EEEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 16 RVILFPLPFQ-GHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 16 ~il~~~~~~~-GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
+|++.-..+. |--.-...|++.|+++|++|..+-+
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 4555544443 8889999999999999999999877
No 196
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=59.91 E-value=81 Score=27.74 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=27.2
Q ss_pred EEEEcCCC-ccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 17 VILFPLPF-QGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 17 il~~~~~~-~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
|.+....+ .|--.-.+.|++.|.++|++|.++-+
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KP 36 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKP 36 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEee
Confidence 34443444 49999999999999999999988775
No 197
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=59.66 E-value=1.5e+02 Score=31.39 Aligned_cols=102 Identities=11% Similarity=0.126 Sum_probs=60.3
Q ss_pred EEEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCHHHHHHHHH
Q 013836 16 RVILFPLPFQ-GHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSLN 94 (435)
Q Consensus 16 ~il~~~~~~~-GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (435)
.|.+.+..+. |--.-.+.|++.|.++|.+|.++-|... . | - . .......+.
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~-~-------------p-~--~-----------~~~~~~~~~ 55 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQ-P-------------P-L--T-----------MSEVEALLA 55 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCccc-C-------------C-C--C-----------HHHHHHHHh
Confidence 4556545443 8899999999999999999999886321 1 1 0 0 000000010
Q ss_pred H-hcchHHHHHHHHHHhccCCcCCCCccEEEEcCchh---------hHHHHHHHcCCCeEEEcccc
Q 013836 95 A-KCIVPFRDCLANKLMSNAQESKDSFACLITDAAWF---------IALSVANDFKLPTIVLLTDS 150 (435)
Q Consensus 95 ~-~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~---------~~~~~A~~~giP~v~~~~~~ 150 (435)
. .....+..+++.+.+-. .+.|+||+|.... ....+|+.++.|.+.+....
T Consensus 56 ~~~~~~~~~~I~~~~~~l~-----~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 56 SGQLDELLEEIVARYHALA-----KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred ccCChHHHHHHHHHHHHhc-----cCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCC
Confidence 0 11122233333332211 5699999886431 24678999999999877653
No 198
>PRK14098 glycogen synthase; Provisional
Probab=58.75 E-value=17 Score=36.76 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=29.9
Q ss_pred CCCEEEEEcCC------CccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 13 NGRRVILFPLP------FQGHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 13 ~~~~il~~~~~------~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
+.|||++++.= +.|=-...-+|.++|+++||+|.++.|..
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 44999998742 12333446788999999999999999954
No 199
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=58.42 E-value=31 Score=30.92 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=25.7
Q ss_pred ccEEE-EcCch-hhHHHHHHHcCCCeEEEcccchHHH
Q 013836 120 FACLI-TDAAW-FIALSVANDFKLPTIVLLTDSIAAS 154 (435)
Q Consensus 120 ~Dlvi-~D~~~-~~~~~~A~~~giP~v~~~~~~~~~~ 154 (435)
||+++ +|+-. --+..=|.++|||.|.+.-+..-+.
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dpd 193 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDPD 193 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCCCc
Confidence 88877 56644 5566788999999999876654443
No 200
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=57.22 E-value=39 Score=33.35 Aligned_cols=94 Identities=13% Similarity=0.107 Sum_probs=53.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSLNA 95 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (435)
|+.+...+.. .+++++-|.+-|-+|..+++........+ ..... +. .+... ....
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~-~~~~~--~~--~~~~~---v~~~------------ 341 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGA-EDKRW--LE--MLGVE---VKYR------------ 341 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccH-HHHHH--HH--hcCCC---ceec------------
Confidence 7777765555 88899999999999999988421111110 00000 01 00000 0000
Q ss_pred hcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEc
Q 013836 96 KCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLL 147 (435)
Q Consensus 96 ~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~ 147 (435)
..+.+.++.+.+ .+||++|... -+..+|+++|||.+.+.
T Consensus 342 ---~dl~~~~~~l~~-------~~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 342 ---ASLEDDMEAVLE-------FEPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred ---cCHHHHHHHHhh-------CCCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 122222244433 5899999884 35678999999999854
No 201
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=56.77 E-value=16 Score=34.20 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=32.5
Q ss_pred CEEEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 013836 15 RRVILFPLPFQ-GHINPMLQLGSILYSEGFSITIIHTTLNS 54 (435)
Q Consensus 15 ~~il~~~~~~~-GHv~p~l~La~~L~~rGH~Vt~~~~~~~~ 54 (435)
||++|+..-+. |--.-..++|-.++++|++|.++++++.+
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 67777776555 99999999999999999999999997644
No 202
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.65 E-value=82 Score=28.19 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhccCCcCCCCccEEEEcCchh---hHHHHHHHcCCCeEE
Q 013836 99 VPFRDCLANKLMSNAQESKDSFACLITDAAWF---IALSVANDFKLPTIV 145 (435)
Q Consensus 99 ~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~---~~~~~A~~~giP~v~ 145 (435)
..++.+++.|. +-++.+.|.-+. -+..+|.+.|||++.
T Consensus 138 ~aM~~~m~~Lk---------~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 138 DAMEKLMEALK---------ERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHHH---------HCCeEEEcccccccchhhhhHhhcCCceee
Confidence 34444556664 478999997553 235789999999876
No 203
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=55.60 E-value=1.1e+02 Score=26.07 Aligned_cols=95 Identities=12% Similarity=0.069 Sum_probs=56.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC---CC---CCCCCCCceEEEccCCCCCCCCCCCCCCCCHHHH
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN---SP---NSCNYPHFEFCSFSDDGFSETYQPSKVADDIPAL 89 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (435)
-|.+++..+.|-..-.+.+|-+.+.+|++|.++---.. .. .... .++.+.... .++.-. . .+....
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~-~~~~~~~~g-~g~~~~---~---~~~~~~ 78 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEP-HGVEFQVMG-TGFTWE---T---QNREAD 78 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHh-cCcEEEECC-CCCeec---C---CCcHHH
Confidence 46677778899999999999999999999977633110 00 0111 267887777 544311 1 111111
Q ss_pred HHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCch
Q 013836 90 LLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAW 129 (435)
Q Consensus 90 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~ 129 (435)
. ......+....+.+.. .++|+||.|-+.
T Consensus 79 ~----~~~~~~~~~a~~~l~~-------~~~DlvVLDEi~ 107 (173)
T TIGR00708 79 T----AIAKAAWQHAKEMLAD-------PELDLVLLDELT 107 (173)
T ss_pred H----HHHHHHHHHHHHHHhc-------CCCCEEEehhhH
Confidence 1 1122333333444443 679999999755
No 204
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=55.51 E-value=9.7 Score=37.91 Aligned_cols=60 Identities=20% Similarity=0.299 Sum_probs=42.1
Q ss_pred chHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCC-cCCHHHHHHHHHHHHcCCchHHHHHHHH
Q 013836 338 STLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEG-KLERKEIERAILRVMVKADSQEMRERAT 405 (435)
Q Consensus 338 s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~~vl~~~~~~~~~~~a~ 405 (435)
++.||+++|.|+|+.=.. --+-.+.. .--|..+++ .-....+++++.++..| ++++.+..
T Consensus 381 v~IEAMa~glPvvAt~~G----GP~EiV~~-~~tG~l~dp~~e~~~~~a~~~~kl~~~---p~l~~~~~ 441 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNNG----GPAEIVVH-GVTGLLIDPGQEAVAELADALLKLRRD---PELWARMG 441 (495)
T ss_pred eeHHHHhcCCCEEEecCC----CceEEEEc-CCcceeeCCchHHHHHHHHHHHHHhcC---HHHHHHHH
Confidence 789999999999987432 22334445 356777776 33334799999999999 66655543
No 205
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=55.17 E-value=29 Score=30.02 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=25.4
Q ss_pred CCccEEEEc-Cch-hhHHHHHHHcCCCeEEEcccch
Q 013836 118 DSFACLITD-AAW-FIALSVANDFKLPTIVLLTDSI 151 (435)
Q Consensus 118 ~~~Dlvi~D-~~~-~~~~~~A~~~giP~v~~~~~~~ 151 (435)
..||+||+- +.. ..+..=|.++|||+|.+..+..
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn~ 161 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNC 161 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCC
Confidence 579998854 433 5667788899999999877654
No 206
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=55.14 E-value=17 Score=32.41 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCeEEEEeC
Q 013836 32 LQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 32 l~La~~L~~rGH~Vt~~~~ 50 (435)
.+||++|.++||+|+++..
T Consensus 30 ~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 30 KIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred HHHHHHHHhCCCEEEEEEC
Confidence 5788999999999999975
No 207
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=54.20 E-value=22 Score=28.16 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=33.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
|+++.+.++..|..-..-++.-|..+|++|++....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~ 36 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLR 36 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 688999999999999999999999999999999984
No 208
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=53.60 E-value=75 Score=30.13 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=32.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
.-|.=++.|++|-.--.+.|++.|.++|++|.+++-.+
T Consensus 38 IsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGY 75 (326)
T PF02606_consen 38 ISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGY 75 (326)
T ss_pred EEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCC
Confidence 34556788899999999999999999999999999843
No 209
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=53.37 E-value=18 Score=31.11 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=29.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
||++--.|+.|=+.-.+.+.++|.++|++|+++.++
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~ 37 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSE 37 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEch
Confidence 567666676676666679999999999999999995
No 210
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=52.87 E-value=29 Score=32.30 Aligned_cols=39 Identities=8% Similarity=0.092 Sum_probs=30.3
Q ss_pred CCCCEEEEEcCCCccC----hHHHHHHHHHHHhCCCeEEEEeC
Q 013836 12 RNGRRVILFPLPFQGH----INPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 12 ~~~~~il~~~~~~~GH----v~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
|+|+||+++..|..+. +.....++++|.+.||+|.++..
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 6789999998765532 35567889999999999988754
No 211
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.70 E-value=1.9e+02 Score=26.78 Aligned_cols=115 Identities=13% Similarity=0.091 Sum_probs=60.9
Q ss_pred CceEEeecchh---hhhcCCccceEeeccCccchHHHHhhCCCee--eccCCCchhHHHHHHHhhhccEEEeCC--cCCH
Q 013836 309 RGYIVKWAPQQ---QVLAHPAVGCFWTHSGWNSTLESICEGIPMI--CQPYFGDQMVNSRYVSHAWRVGLQLEG--KLER 381 (435)
Q Consensus 309 ~~~~~~~~p~~---~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v--~~P~~~DQ~~na~~v~~~~G~g~~~~~--~~~~ 381 (435)
++.+.+|+||+ ++|-.|++-.+ -|=-|+.-|..+|+|.+ ++|...+-.. ..++.- +++ .+=+
T Consensus 239 rvvklPFvpqddyd~LL~lcD~n~V---RGEDSFVRAq~agkPflWHIYpQdentHl--~KLeaF------ldky~~~lp 307 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDFNLV---RGEDSFVRAQLAGKPFLWHIYPQDENTHL--AKLEAF------LDKYCPFLP 307 (370)
T ss_pred EEEEecCCcHhHHHHHHHhccccee---ecchHHHHHHHcCCCcEEEecCCccccHH--HHHHHH------HHHhCCCCC
Confidence 44556999987 58878887333 36779999999999986 5554333211 122110 111 1111
Q ss_pred HHHHHHHHHHHcC-------CchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 013836 382 KEIERAILRVMVK-------ADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIMS 434 (435)
Q Consensus 382 ~~l~~~i~~vl~~-------~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 434 (435)
...++++++...+ .+++-+.++...+++..++=.+.-+...+..+.|+.++++
T Consensus 308 ~~~a~alrt~~~~~N~~~ls~~w~~f~~~~~~~r~~a~~wa~~l~~~~dlaekLvaF~ek 367 (370)
T COG4394 308 PNTAKALRTFWIAWNAGRLSDDWSYFFKNLKEWREHAKKWANHLIKNPDLAEKLVAFIEK 367 (370)
T ss_pred HHHHHHHHHHHHHhcCCcccccHHHHHHhhHHHHHHHHHHHHHHccCccHHHHHHHHHHH
Confidence 2233333333211 1233444444444444443333444567777788777764
No 212
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=52.26 E-value=41 Score=32.06 Aligned_cols=118 Identities=9% Similarity=-0.008 Sum_probs=65.6
Q ss_pred CCEEEEEcCCCc--cChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCHHHHHH
Q 013836 14 GRRVILFPLPFQ--GHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLL 91 (435)
Q Consensus 14 ~~~il~~~~~~~--GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (435)
++||++++.|+. |=-.-..++.+.+..+|.+|.-+-..+. -.... . +..+...... .+.+. ........+
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~~Gy~-GL~~~--~--i~~l~~~~v~-~~~~~--GGT~lgssR 73 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIYNGYL-GLLEG--D--IKPLTREDVD-DLINR--GGTFLGSAR 73 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHcCCEEEEEecchh-hhcCC--c--ceeccccchh-HHHhc--CCeEEeeCC
Confidence 579999999987 7777788999999999999988776421 11111 0 1222200000 00000 000000000
Q ss_pred HHHHhcchHHHHHHHHHHhccCCcCCCCccEEE---EcCchhhHHHHHHHcCCCeEEE
Q 013836 92 SLNAKCIVPFRDCLANKLMSNAQESKDSFACLI---TDAAWFIALSVANDFKLPTIVL 146 (435)
Q Consensus 92 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi---~D~~~~~~~~~A~~~giP~v~~ 146 (435)
.......+..+..++.+++ .+.|.+| -|.....+..+++++++|+|.+
T Consensus 74 ~~~~~~~e~~~~~~~~l~~-------~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGv 124 (347)
T COG0205 74 FPEFKTEEGRKVAAENLKK-------LGIDALVVIGGDGSYTGAALLAEEGGIPVVGV 124 (347)
T ss_pred CCCcccHHHHHHHHHHHHH-------cCCCEEEEECCCChHHHHHHHHHhcCCcEEec
Confidence 0000011122245667766 5677777 4667778889999999999884
No 213
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=52.21 E-value=94 Score=30.71 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=33.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~ 54 (435)
..|+++-.++.|--.-...||..|.++|++|.+++.+...
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 4455666667799999999999999999999999997543
No 214
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=51.79 E-value=27 Score=28.74 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=22.6
Q ss_pred CccceEeeccCcc------chHHHHhhCCCeeeccC
Q 013836 325 PAVGCFWTHSGWN------STLESICEGIPMICQPY 354 (435)
Q Consensus 325 ~~v~~~I~HGG~g------s~~eal~~GvP~v~~P~ 354 (435)
+.+ +++|+|-| .+.+|...++|+|++.-
T Consensus 60 ~~v--~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 60 PGV--VLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CEE--EEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 445 88887766 67889999999999964
No 215
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=51.77 E-value=1.3e+02 Score=27.20 Aligned_cols=29 Identities=21% Similarity=0.044 Sum_probs=25.8
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 23 PFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 23 ~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
|+-|-..-.-.||..|++.|++|..+--.
T Consensus 11 GGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 11 GGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 45599999999999999999999998775
No 216
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=51.54 E-value=1.4e+02 Score=27.29 Aligned_cols=24 Identities=8% Similarity=0.008 Sum_probs=16.8
Q ss_pred HHHHHHHHHhC---CCeEEEEeCCCCC
Q 013836 31 MLQLGSILYSE---GFSITIIHTTLNS 54 (435)
Q Consensus 31 ~l~La~~L~~r---GH~Vt~~~~~~~~ 54 (435)
+.+|+++|.+. |++|+++.|..+.
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eq 42 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQ 42 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCC
Confidence 45667777663 4799999996543
No 217
>PRK10867 signal recognition particle protein; Provisional
Probab=51.06 E-value=77 Score=31.40 Aligned_cols=41 Identities=10% Similarity=0.129 Sum_probs=33.5
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeCCCCC
Q 013836 14 GRRVILFPLPFQGHINPMLQLGSILYSE-GFSITIIHTTLNS 54 (435)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~La~~L~~r-GH~Vt~~~~~~~~ 54 (435)
+.-|+++-.++.|--.-...||..|.++ |+.|.+++.+...
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 3455566666779999999999999999 9999999997543
No 218
>PRK04940 hypothetical protein; Provisional
Probab=50.38 E-value=46 Score=28.43 Aligned_cols=31 Identities=3% Similarity=-0.046 Sum_probs=27.0
Q ss_pred CccEEEEcCch-hhHHHHHHHcCCCeEEEccc
Q 013836 119 SFACLITDAAW-FIALSVANDFKLPTIVLLTD 149 (435)
Q Consensus 119 ~~Dlvi~D~~~-~~~~~~A~~~giP~v~~~~~ 149 (435)
+++++|...+. +|+.-+|+++|+|+|.+-|.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 47888888887 99999999999999998665
No 219
>PRK13604 luxD acyl transferase; Provisional
Probab=49.82 E-value=41 Score=31.51 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
.+.+.+++..|..++-..+..+|+.|.++|..|.-+=.
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD~ 72 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYDS 72 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEecC
Confidence 45577888888888877799999999999999987654
No 220
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=48.94 E-value=23 Score=30.37 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=29.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
+||++...|+.|=+. ...+.+.|.++|++|.++.++.
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~ 38 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKA 38 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChh
Confidence 567777766666554 8999999999999999999953
No 221
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=48.13 E-value=15 Score=33.20 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCC
Q 013836 30 PMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 30 p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
..-.|+++|+++||+|++++|..
T Consensus 21 v~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 21 VVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHhcCCeEEEEEccc
Confidence 45688999999999999999963
No 222
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=48.05 E-value=65 Score=30.75 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEeCC
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGF-SITIIHTT 51 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH-~Vt~~~~~ 51 (435)
+..||+++=.|+-| -.+++.|++.|+ +++++-.+
T Consensus 23 ~~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 23 REKHVLIVGAGALG-----AANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcCC
Confidence 46789988877766 678999999998 67777653
No 223
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=47.38 E-value=38 Score=33.26 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=37.0
Q ss_pred CCCCCCCCCEEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 013836 7 PCKLPRNGRRVILFPL--PFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (435)
Q Consensus 7 ~~~~~~~~~~il~~~~--~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 53 (435)
|...+..+|+|+.+.. |+-|--.-.+.||..|+.+|++|.++=.+++
T Consensus 113 ~~r~~~~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ 161 (405)
T PRK13869 113 PHRRGSEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQ 161 (405)
T ss_pred CCCCCCCCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 4555555777766654 5669999999999999999999999977654
No 224
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=46.42 E-value=18 Score=35.31 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=24.8
Q ss_pred EEEEcCC-CccChHHHHHHHHHHHhCCCeEEEEe
Q 013836 17 VILFPLP-FQGHINPMLQLGSILYSEGFSITIIH 49 (435)
Q Consensus 17 il~~~~~-~~GHv~p~l~La~~L~~rGH~Vt~~~ 49 (435)
|++--.. +.|-..-.+.|.++|.+||++|--+-
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfK 36 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFK 36 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCcccccc
Confidence 4444333 34999999999999999999986443
No 225
>PLN02939 transferase, transferring glycosyl groups
Probab=46.28 E-value=35 Score=37.14 Aligned_cols=42 Identities=17% Similarity=0.320 Sum_probs=30.8
Q ss_pred CCCCEEEEEcCC-----CccCh-HHHHHHHHHHHhCCCeEEEEeCCCC
Q 013836 12 RNGRRVILFPLP-----FQGHI-NPMLQLGSILYSEGFSITIIHTTLN 53 (435)
Q Consensus 12 ~~~~~il~~~~~-----~~GHv-~p~l~La~~L~~rGH~Vt~~~~~~~ 53 (435)
.++|||++++.= -.|-+ ...-+|.++|+++||+|.+++|.+.
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~ 526 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYD 526 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 356999988642 12333 3456899999999999999999643
No 226
>PRK06849 hypothetical protein; Provisional
Probab=46.16 E-value=38 Score=32.96 Aligned_cols=35 Identities=11% Similarity=0.297 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
++|+|+++-. .....+.+++.|.++||+|+++...
T Consensus 3 ~~~~VLI~G~----~~~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 3 TKKTVLITGA----RAPAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCEEEEeCC----CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4678877742 2235899999999999999999884
No 227
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=46.07 E-value=17 Score=33.26 Aligned_cols=43 Identities=19% Similarity=0.086 Sum_probs=34.2
Q ss_pred CceEEeecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccC
Q 013836 309 RGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPY 354 (435)
Q Consensus 309 ~~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~ 354 (435)
.+.+.+-++-.+++.+++. +||-.+- +-.||+.+|+|++++..
T Consensus 184 ~~~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKPVIVFGR 226 (269)
T ss_pred eEEECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCceEEecC
Confidence 3344466777899999998 8887654 77899999999999764
No 228
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=45.97 E-value=42 Score=29.59 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=36.5
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
++-||++.+.++..|-.-..=++-.|..+|++|++++..
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~ 125 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVM 125 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCC
Confidence 567999999999999999999999999999999999985
No 229
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=44.96 E-value=17 Score=30.21 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=24.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
||.++-.|..|+ ++|..|.++||+|++.+.+
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSC
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEecc
Confidence 455555555554 7899999999999999995
No 230
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=44.96 E-value=38 Score=29.09 Aligned_cols=88 Identities=10% Similarity=0.037 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEccC-CCCCCCCCCCCCCCCHHHHHHHHHH-hcchHHHHHH
Q 013836 28 INPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSD-DGFSETYQPSKVADDIPALLLSLNA-KCIVPFRDCL 105 (435)
Q Consensus 28 v~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l 105 (435)
-.-.+.||+.|.+.|+++. .|. . ....-+..|+.+..+.. .++|+.+.-...+.++ .....+.. .-.+ +-.
T Consensus 10 K~~l~~lAk~L~~lGf~I~-AT~-G-TAk~L~e~GI~v~~V~k~TgfpE~l~GRVKTLHP-~ihggiL~~~~~~---~~~ 82 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL-STG-G-TAKFLKEAGIPVTDVSDITGFPEILGGRVKTLHP-KIHGGILARRDNE---EHK 82 (187)
T ss_pred cccHHHHHHHHHHCCCEEE-Ecc-H-HHHHHHHcCCeEEEhhhccCCcHhhCCccccCCh-hhhhhhhcCCCCh---hHH
Confidence 3447899999999999994 333 1 12222235777777764 5566552212233333 23332322 1111 111
Q ss_pred HHHHhccCCcCCCCccEEEEcC
Q 013836 106 ANKLMSNAQESKDSFACLITDA 127 (435)
Q Consensus 106 ~~l~~~~~~~~~~~~Dlvi~D~ 127 (435)
++.+.+- ...|+||++.
T Consensus 83 -~~~~~~i----~~idlVvvNl 99 (187)
T cd01421 83 -DLEEHGI----EPIDLVVVNL 99 (187)
T ss_pred -HHHHcCC----CCeeEEEEcc
Confidence 3332222 6799999994
No 231
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=44.47 E-value=95 Score=29.35 Aligned_cols=127 Identities=11% Similarity=0.056 Sum_probs=67.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC--CCCCCCceEEEccCCCCCCCCCCCCCCCCHHHHHH
Q 013836 14 GRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPN--SCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLL 91 (435)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (435)
+|+|.++=.|++| .+||+.|++.||+|++-........ .....+-.| +|...+|++ .....++....+
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~y--Lp~i~lp~~---l~at~Dl~~a~~ 70 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRDEEIVAEINETRENPKY--LPGILLPPN---LKATTDLAEALD 70 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccc--cCCccCCcc---cccccCHHHHHh
Confidence 3788888888888 5899999999999999998532211 111122222 332334444 344455554443
Q ss_pred HH----HHhcchHHHHHHHHHHhccCCcCCCCccEEEEc--------CchhhHHHHHHHcCCCeEEEcccchHHHHH
Q 013836 92 SL----NAKCIVPFRDCLANKLMSNAQESKDSFACLITD--------AAWFIALSVANDFKLPTIVLLTDSIAASLS 156 (435)
Q Consensus 92 ~~----~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D--------~~~~~~~~~A~~~giP~v~~~~~~~~~~~~ 156 (435)
.. ...-...+++.++++... -+.|..|+. ......-.+.+.++...+.+..+|.+....
T Consensus 71 ~ad~iv~avPs~~~r~v~~~l~~~------l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EV 141 (329)
T COG0240 71 GADIIVIAVPSQALREVLRQLKPL------LLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEV 141 (329)
T ss_pred cCCEEEEECChHHHHHHHHHHhhh------ccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHH
Confidence 11 011223444555555421 123333321 122344456677775546666666665443
No 232
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=44.42 E-value=1.9e+02 Score=25.76 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=28.9
Q ss_pred CEEEEEcCCCc--cChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 15 RRVILFPLPFQ--GHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 15 ~~il~~~~~~~--GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
|+.+|++.--+ |-....-.|++.|.++|++|...-+
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KP 39 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKP 39 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECc
Confidence 55566654433 8889999999999999999999877
No 233
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=44.39 E-value=30 Score=32.57 Aligned_cols=37 Identities=11% Similarity=0.043 Sum_probs=30.2
Q ss_pred CEEEEEcCCCc---cChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 15 RRVILFPLPFQ---GHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 15 ~~il~~~~~~~---GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
|||+|+.-|-. -+.....+|.++.++|||+|.++.+.
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~ 40 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPG 40 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehh
Confidence 67887776533 56667889999999999999999994
No 234
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=44.20 E-value=54 Score=27.96 Aligned_cols=36 Identities=25% Similarity=0.178 Sum_probs=25.3
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSE--GFSITIIHTT 51 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~r--GH~Vt~~~~~ 51 (435)
.+++++ .|+.||..=|+.|.+.|.++ +-......++
T Consensus 39 ~~~lVv-lGSGGHT~EMlrLl~~l~~~y~~r~yI~a~tD 76 (211)
T KOG3339|consen 39 LSTLVV-LGSGGHTGEMLRLLEALQDLYSPRSYIAADTD 76 (211)
T ss_pred ceEEEE-EcCCCcHHHHHHHHHHHHhhcCceEEEEecCc
Confidence 455544 48999999999999999877 3333334443
No 235
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=43.88 E-value=36 Score=30.93 Aligned_cols=39 Identities=23% Similarity=0.442 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
++..++|+=.++.|--.=..+++.+|.++|+.|+|++.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~ 142 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP 142 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 456788888888888888999999999889999999883
No 236
>PRK05920 aromatic acid decarboxylase; Validated
Probab=43.19 E-value=35 Score=29.87 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=29.0
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 14 GRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
.+||++--.|+.+ ..=...+.++|.+.||+|+++.++
T Consensus 3 ~krIllgITGsia-a~ka~~lvr~L~~~g~~V~vi~T~ 39 (204)
T PRK05920 3 MKRIVLAITGASG-AIYGVRLLECLLAADYEVHLVISK 39 (204)
T ss_pred CCEEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEEECh
Confidence 3666666555444 468899999999999999999995
No 237
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=43.15 E-value=55 Score=26.18 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=23.1
Q ss_pred CEEEEEcC-CCccCh--HHHHHHHHHHHhCCCeE-EEEeC
Q 013836 15 RRVILFPL-PFQGHI--NPMLQLGSILYSEGFSI-TIIHT 50 (435)
Q Consensus 15 ~~il~~~~-~~~GHv--~p~l~La~~L~~rGH~V-t~~~~ 50 (435)
||++|+-. +-+|+- .-.+.+|+.+.++||+| .++-.
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~ 40 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFY 40 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEe
Confidence 45554433 233444 45778899999999995 55554
No 238
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=43.10 E-value=81 Score=26.41 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=23.7
Q ss_pred CCccceEeeccCcc------chHHHHhhCCCeeeccC
Q 013836 324 HPAVGCFWTHSGWN------STLESICEGIPMICQPY 354 (435)
Q Consensus 324 ~~~v~~~I~HGG~g------s~~eal~~GvP~v~~P~ 354 (435)
.+.+ +++|.|-| .+.+|...++|+|++.-
T Consensus 63 ~~~v--~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 63 KLGV--CLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred CCEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 3555 88898877 78899999999999963
No 239
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=42.71 E-value=1.2e+02 Score=26.54 Aligned_cols=52 Identities=4% Similarity=0.017 Sum_probs=31.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeCCCCCCC---CCCCCCceEEEcc
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSE--GFSITIIHTTLNSPN---SCNYPHFEFCSFS 69 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~r--GH~Vt~~~~~~~~~~---~~~~~~~~~~~~~ 69 (435)
|||+++..+..+= +.+|.+++.+. +++|.++.+...... .+...|+.+..++
T Consensus 2 ~ki~vl~sg~gs~---~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~ 58 (200)
T PRK05647 2 KRIVVLASGNGSN---LQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLD 58 (200)
T ss_pred ceEEEEEcCCChh---HHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEEC
Confidence 8999999866433 44667777776 478887666432111 1223567776665
No 240
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=42.36 E-value=50 Score=28.63 Aligned_cols=41 Identities=12% Similarity=0.228 Sum_probs=31.0
Q ss_pred CCCEEEEEcCC--CccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 013836 13 NGRRVILFPLP--FQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (435)
Q Consensus 13 ~~~~il~~~~~--~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 53 (435)
..+|++.++.+ +.|--.-...||..|+++|++|.++-.+..
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~ 57 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMR 57 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 34666655544 347788899999999999999999877543
No 241
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=42.23 E-value=2e+02 Score=23.97 Aligned_cols=97 Identities=12% Similarity=0.142 Sum_probs=56.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC------CCCCCCceEEEccCCCCCCCCCCCCCCCCHHHH
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPN------SCNYPHFEFCSFSDDGFSETYQPSKVADDIPAL 89 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (435)
-|.+++.++.|-..-.+.+|-+.+.+|++|.++---..... ...-+++.+..++ .+..-. ..+....
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g-~~~~~~------~~~~~~~ 76 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMG-RGFFWT------TENDEED 76 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECC-CCCccC------CCChHHH
Confidence 46677888999999999999999999999999544211000 1122477887777 432211 1122211
Q ss_pred HHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchh
Q 013836 90 LLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWF 130 (435)
Q Consensus 90 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~ 130 (435)
. ......++...+.+.. .++|+||.|-+..
T Consensus 77 ~----~~a~~~~~~a~~~~~~-------~~~dLlVLDEi~~ 106 (159)
T cd00561 77 I----AAAAEGWAFAKEAIAS-------GEYDLVILDEINY 106 (159)
T ss_pred H----HHHHHHHHHHHHHHhc-------CCCCEEEEechHh
Confidence 1 1122233333333332 5799999997654
No 242
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=41.44 E-value=75 Score=26.64 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=16.6
Q ss_pred ChHHHHHHHHHHHh-CCCeEEEEe
Q 013836 27 HINPMLQLGSILYS-EGFSITIIH 49 (435)
Q Consensus 27 Hv~p~l~La~~L~~-rGH~Vt~~~ 49 (435)
|.....+|+++|.+ +|.++.+..
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v 24 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEV 24 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEE
Confidence 77888999999988 455444443
No 243
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=41.35 E-value=4.8e+02 Score=27.97 Aligned_cols=40 Identities=10% Similarity=0.159 Sum_probs=31.1
Q ss_pred CCEEEEEcCC--CccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 013836 14 GRRVILFPLP--FQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (435)
Q Consensus 14 ~~~il~~~~~--~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 53 (435)
+.|++.++.. +.|--.-...||..|+..|++|.++-.+..
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r 571 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 571 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3456666554 448888889999999999999999987643
No 244
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.18 E-value=45 Score=31.07 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=39.9
Q ss_pred hhhcCCccceEeeccCccchHHHHhh----CCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHHHHHHHHHHHHcC
Q 013836 320 QVLAHPAVGCFWTHSGWNSTLESICE----GIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERKEIERAILRVMVK 394 (435)
Q Consensus 320 ~ll~~~~v~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~vl~~ 394 (435)
++...+++ +|+=||-||+..+.+. ++|++.+-... +| -+. ..+++++.+++++++++
T Consensus 60 ~~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G~--------------lG-FLt-~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 60 ELDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINTGR--------------LG-FLA-TVSKEEIEETIDELLNG 120 (292)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecCC--------------CC-ccc-ccCHHHHHHHHHHHHcC
Confidence 34445677 9999999999999873 67887765411 11 111 46778888888888876
No 245
>PLN02929 NADH kinase
Probab=40.86 E-value=41 Score=31.36 Aligned_cols=68 Identities=10% Similarity=0.112 Sum_probs=44.5
Q ss_pred hhcCCccceEeeccCccchHHHHh---hCCCeeeccCCC------chhHHHHHHHhhhccEEEeCCcCCHHHHHHHHHHH
Q 013836 321 VLAHPAVGCFWTHSGWNSTLESIC---EGIPMICQPYFG------DQMVNSRYVSHAWRVGLQLEGKLERKEIERAILRV 391 (435)
Q Consensus 321 ll~~~~v~~~I~HGG~gs~~eal~---~GvP~v~~P~~~------DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~v 391 (435)
....+++ +|+-||-||+..+.+ .++|++.+=... .+.+|.....+ -+|--. ..+.+++.++|+++
T Consensus 61 ~~~~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r--~lGfL~--~~~~~~~~~~L~~i 134 (301)
T PLN02929 61 PIRDVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDARR--STGHLC--AATAEDFEQVLDDV 134 (301)
T ss_pred ccCCCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCccccccccccccccccc--Cccccc--cCCHHHHHHHHHHH
Confidence 3455677 999999999999865 478988876532 12233211111 233322 36788999999999
Q ss_pred HcC
Q 013836 392 MVK 394 (435)
Q Consensus 392 l~~ 394 (435)
+++
T Consensus 135 l~g 137 (301)
T PLN02929 135 LFG 137 (301)
T ss_pred HcC
Confidence 986
No 246
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=40.67 E-value=1.3e+02 Score=24.97 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=27.8
Q ss_pred cCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 013836 21 PLPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (435)
Q Consensus 21 ~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 53 (435)
+-|+.|--.-...||..|+++|++|.++-.+.+
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q 39 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDADIY 39 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 445668888999999999999999999987543
No 247
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=40.51 E-value=93 Score=29.14 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=56.4
Q ss_pred CCceEE-eecchh---hhhcCCccceEeec--cCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCC-cCC
Q 013836 308 GRGYIV-KWAPQQ---QVLAHPAVGCFWTH--SGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEG-KLE 380 (435)
Q Consensus 308 ~~~~~~-~~~p~~---~ll~~~~v~~~I~H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~ 380 (435)
+++.+. +++|.+ ++|..|+++=|+|+ =|.||+.-.++.|+|+++--. =+.|... .+ .|+-+-.+. .++
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~---n~fwqdl-~e-~gv~Vlf~~d~L~ 280 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRD---NPFWQDL-TE-QGLPVLFTGDDLD 280 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecC---CchHHHH-Hh-CCCeEEecCCccc
Confidence 677664 777754 78899999777775 489999999999999997643 2344333 34 378775555 788
Q ss_pred HHHHHHHHHHH
Q 013836 381 RKEIERAILRV 391 (435)
Q Consensus 381 ~~~l~~~i~~v 391 (435)
...+.++=+++
T Consensus 281 ~~~v~e~~rql 291 (322)
T PRK02797 281 EDIVREAQRQL 291 (322)
T ss_pred HHHHHHHHHHH
Confidence 88887774443
No 248
>PRK05595 replicative DNA helicase; Provisional
Probab=40.29 E-value=1e+02 Score=30.61 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=28.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCC
Q 013836 17 VILFPLPFQGHINPMLQLGSILY-SEGFSITIIHTT 51 (435)
Q Consensus 17 il~~~~~~~GHv~p~l~La~~L~-~rGH~Vt~~~~~ 51 (435)
+++--.|+.|--.-.+.+|..++ +.|+.|.+++..
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlE 239 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLE 239 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 44566678899999999998876 569999999884
No 249
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.98 E-value=49 Score=27.26 Aligned_cols=71 Identities=8% Similarity=0.117 Sum_probs=50.8
Q ss_pred eccCCCchhHHHHHHHhhhccEEEeCCcCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 013836 351 CQPYFGDQMVNSRYVSHAWRVGLQLEGKLERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTD 430 (435)
Q Consensus 351 ~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 430 (435)
-+|....+-.+|+.+.+. .-.+. ....+.|.+.+..++.|. |.-+-++.+++..+.++ |.+..+++.+++-
T Consensus 77 pyPWt~~~L~aa~el~ee-~eeLs---~deke~~~~sl~dL~~d~--PkT~vA~~rfKk~~~K~---g~~v~~~~~dIlV 147 (158)
T PF10083_consen 77 PYPWTENALEAANELIEE-DEELS---PDEKEQFKESLPDLTKDT--PKTKVAATRFKKILSKA---GSIVGDAIRDILV 147 (158)
T ss_pred CCchHHHHHHHHHHHHHH-hhcCC---HHHHHHHHhhhHHHhhcC--CccHHHHHHHHHHHHHH---hHHHHHHHHHHHH
Confidence 467777888888777762 22222 244688999999999774 89999999999999884 5555555554443
No 250
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=39.83 E-value=43 Score=28.77 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=29.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYS-EGFSITIIHTT 51 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~-rGH~Vt~~~~~ 51 (435)
+||++--.|+-| .+=...|+++|.+ .||+|.++.++
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~ 38 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQ 38 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECH
Confidence 567777767666 6669999999999 59999999995
No 251
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=39.70 E-value=53 Score=30.55 Aligned_cols=41 Identities=12% Similarity=0.027 Sum_probs=30.4
Q ss_pred CCCCCEEEEEcCCCc-cChH---HHHHHHHHHHhCCCeEEEEeCC
Q 013836 11 PRNGRRVILFPLPFQ-GHIN---PMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 11 ~~~~~~il~~~~~~~-GHv~---p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
||.+++|++++.+-. =|-. -...+.++|.++||+|.++...
T Consensus 1 ~~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 1 PKMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CCCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 455679998884433 2333 5688999999999999999764
No 252
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.86 E-value=1.5e+02 Score=28.85 Aligned_cols=38 Identities=11% Similarity=0.262 Sum_probs=32.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
--|+|+-.-+.|-....-.||..+.++|..+.++|.+.
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDT 139 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADT 139 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecc
Confidence 44666767777999999999999999999999999964
No 253
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=38.85 E-value=57 Score=27.27 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=21.1
Q ss_pred eEeeccCcc------chHHHHhhCCCeeeccC
Q 013836 329 CFWTHSGWN------STLESICEGIPMICQPY 354 (435)
Q Consensus 329 ~~I~HGG~g------s~~eal~~GvP~v~~P~ 354 (435)
.+++|.|-| .+++|...++|+|++.-
T Consensus 62 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 62 ALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred EEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 377777766 67889999999999964
No 254
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=38.60 E-value=1.4e+02 Score=29.52 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCCCC
Q 013836 14 GRRVILFPLPFQGHINPMLQLGSILY-SEGFSITIIHTTLN 53 (435)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~La~~L~-~rGH~Vt~~~~~~~ 53 (435)
+.-++++-.++.|--.-...||..|. ++|..|.+++.+..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 34556666667799999999999997 57999999999754
No 255
>PRK13768 GTPase; Provisional
Probab=38.56 E-value=99 Score=28.03 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=29.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
.+++.-.++.|--.-...++..|.++|++|.++..++
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 3445555556888889999999999999999998754
No 256
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=38.36 E-value=43 Score=21.17 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 013836 380 ERKEIERAILRVMVKADSQEMRERATYL 407 (435)
Q Consensus 380 ~~~~l~~~i~~vl~~~~~~~~~~~a~~l 407 (435)
|++.|.+||..+.++. -++++.|+.+
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 5789999999998763 4677766654
No 257
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=38.13 E-value=50 Score=28.06 Aligned_cols=37 Identities=8% Similarity=0.052 Sum_probs=25.7
Q ss_pred HHHHHhccCCcCCCCccEEEEcCchhh--HHHHHHHcCCCeEEEcc
Q 013836 105 LANKLMSNAQESKDSFACLITDAAWFI--ALSVANDFKLPTIVLLT 148 (435)
Q Consensus 105 l~~l~~~~~~~~~~~~Dlvi~D~~~~~--~~~~A~~~giP~v~~~~ 148 (435)
++.+.. .+||+||....... ....-+..|||++.+..
T Consensus 62 ~E~ll~-------l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 62 VELIVA-------LKPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred HHHHhc-------cCCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 677776 68999998653322 34455789999988753
No 258
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=37.98 E-value=76 Score=27.04 Aligned_cols=103 Identities=11% Similarity=-0.018 Sum_probs=54.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCe--EEEEeCCCCCCCCC---CCCCceEEEccCCCCCCCCCCCCCCCCHHHH
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFS--ITIIHTTLNSPNSC---NYPHFEFCSFSDDGFSETYQPSKVADDIPAL 89 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~--Vt~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (435)
|||+|+..++. ..+..+.++|.+++|+ |..+.+........ ...++....+. . ..
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~~~~~~~~~~-~---------~~------- 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIKNGIPAQVAD-E---------KN------- 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHHTTHHEEEHH-G---------GG-------
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEeccccccccccccccCCCCEEecc-c---------cC-------
Confidence 78999876554 5677788999999998 55555533221110 01223322222 0 00
Q ss_pred HHHHHHhcchHHH-HHHHHHHhccCCcCCCCccEEEEcCch-hhHHHHHHHcCCCeEEEccc
Q 013836 90 LLSLNAKCIVPFR-DCLANKLMSNAQESKDSFACLITDAAW-FIALSVANDFKLPTIVLLTD 149 (435)
Q Consensus 90 ~~~~~~~~~~~l~-~~l~~l~~~~~~~~~~~~Dlvi~D~~~-~~~~~~A~~~giP~v~~~~~ 149 (435)
........ ++++.+.+ .+||++|+-.+. .-...+-......++-++++
T Consensus 61 -----~~~~~~~~~~~~~~l~~-------~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 61 -----FQPRSENDEELLELLES-------LNPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp -----SSSHHHHHHHHHHHHHH-------TT-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred -----CCchHhhhhHHHHHHHh-------hccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 00001112 23444444 679999987654 44455667778888887765
No 259
>PRK09739 hypothetical protein; Provisional
Probab=37.97 E-value=81 Score=27.29 Aligned_cols=39 Identities=8% Similarity=-0.008 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCCccC--h-HHHHHHHHHHHhCCCeEEEEeC
Q 013836 12 RNGRRVILFPLPFQGH--I-NPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 12 ~~~~~il~~~~~~~GH--v-~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
|+.|||+++....+.+ - .-.-.+.+.|.++||+|+++--
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 4458888775433322 1 1244456777778999998765
No 260
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=37.68 E-value=37 Score=29.07 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=25.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 17 il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
|++--.|+.|-+. ...|.++|.++|++|.++.|+
T Consensus 2 illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~ 35 (181)
T TIGR00421 2 IVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISD 35 (181)
T ss_pred EEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECc
Confidence 4444445545444 488999999999999999995
No 261
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=37.58 E-value=67 Score=28.46 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=34.9
Q ss_pred CCCEEEEEcCC-CccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 13 NGRRVILFPLP-FQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 13 ~~~~il~~~~~-~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
++..|+|++-+ -.+...+.....++|.++|++|.|++|.
T Consensus 149 ~~t~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLnP~ 188 (222)
T PF05762_consen 149 RRTTVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLNPL 188 (222)
T ss_pred cCcEEEEEecccccCChHHHHHHHHHHHHhCCEEEEECCc
Confidence 46778999988 5699999999999999999999999995
No 262
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.50 E-value=71 Score=29.98 Aligned_cols=56 Identities=16% Similarity=0.203 Sum_probs=39.1
Q ss_pred hhcCCccceEeeccCccchHHHHhh----CCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHHHHHHHHHHHHcC
Q 013836 321 VLAHPAVGCFWTHSGWNSTLESICE----GIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERKEIERAILRVMVK 394 (435)
Q Consensus 321 ll~~~~v~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~vl~~ 394 (435)
+...+++ +|+=||-||+..+.+. ++|++.+.... +|.-. ...++++.+++++++++
T Consensus 69 ~~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G~--------------lGFL~--~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 69 AADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLGH--------------VGFLA--EAEAEDLDEAVERVVDR 128 (306)
T ss_pred cccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecCC--------------Cceec--cCCHHHHHHHHHHHHcC
Confidence 3345677 9999999999999764 78888776511 12111 35667788888888776
No 263
>PLN02572 UDP-sulfoquinovose synthase
Probab=37.37 E-value=66 Score=31.98 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=31.6
Q ss_pred ccCCCCCCCCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 3 TQQDPCKLPRNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 3 ~~~~~~~~~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
|.++|...+..+++-++++ |+.|.+-- .|+++|.++||+|+.+..
T Consensus 35 ~~~~~~~~~~~~~k~VLVT-GatGfIGs--~Lv~~L~~~G~~V~~~d~ 79 (442)
T PLN02572 35 TPSAPGSSSSSKKKKVMVI-GGDGYCGW--ATALHLSKRGYEVAIVDN 79 (442)
T ss_pred CCCCCCCCccccCCEEEEE-CCCcHHHH--HHHHHHHHCCCeEEEEec
Confidence 4556666655555555555 67777654 567999999999998764
No 264
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=36.70 E-value=1.2e+02 Score=30.31 Aligned_cols=107 Identities=11% Similarity=0.105 Sum_probs=59.3
Q ss_pred EEEEcCCC-ccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEccCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 013836 17 VILFPLPF-QGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSDDGFSETYQPSKVADDIPALLLSLNA 95 (435)
Q Consensus 17 il~~~~~~-~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (435)
|++....+ -|--.-...|++.|.++|++|..+-+.+.. ..-.++..- .+.+.. ..+. + +
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~------~D~~~~~~~-~g~~~~------~ld~--~---~-- 61 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDY------IDPMFHTQA-TGRPSR------NLDS--F---F-- 61 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCC------CCHHHHHHH-hCCchh------hCCc--c---c--
Confidence 44443333 378889999999999999999998762110 000000000 011100 0000 0 0
Q ss_pred hcchHHHHHHHHHHhccCCcCCCCccEEEEcCch------------hhHHHHHHHcCCCeEEEcccch
Q 013836 96 KCIVPFRDCLANKLMSNAQESKDSFACLITDAAW------------FIALSVANDFKLPTIVLLTDSI 151 (435)
Q Consensus 96 ~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~------------~~~~~~A~~~giP~v~~~~~~~ 151 (435)
.-...+++.+..+. .+.|++|++... .....+|+.++.|.|.+.....
T Consensus 62 ~~~~~i~~~~~~~~--------~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~~ 121 (449)
T TIGR00379 62 MSEAQIQECFHRHS--------KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQR 121 (449)
T ss_pred CCHHHHHHHHHHhc--------ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCch
Confidence 01222333333332 468999977641 2367899999999999887653
No 265
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=36.63 E-value=2.8e+02 Score=23.91 Aligned_cols=52 Identities=6% Similarity=0.054 Sum_probs=30.4
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCC--eEEEEeCCCC-CC--CCCCCCCceEEEcc
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGF--SITIIHTTLN-SP--NSCNYPHFEFCSFS 69 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH--~Vt~~~~~~~-~~--~~~~~~~~~~~~~~ 69 (435)
|||+++..+..+= +.+|.+.+.+.++ +|.++.+... .. ..+...|+.++.++
T Consensus 1 ~riail~sg~gs~---~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~ 57 (190)
T TIGR00639 1 KRIVVLISGNGSN---LQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLS 57 (190)
T ss_pred CeEEEEEcCCChh---HHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEEC
Confidence 6888888755543 4567777777665 7777655432 11 11223567666555
No 266
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=36.54 E-value=48 Score=28.12 Aligned_cols=114 Identities=11% Similarity=0.170 Sum_probs=57.2
Q ss_pred cChHHHHHHHHHH-HhCCCeEEEEeCCCCCCCCCCCCCceEEEccCCCC---------CCC--------CCCCCCCCCHH
Q 013836 26 GHINPMLQLGSIL-YSEGFSITIIHTTLNSPNSCNYPHFEFCSFSDDGF---------SET--------YQPSKVADDIP 87 (435)
Q Consensus 26 GHv~p~l~La~~L-~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--------~~~~~~~~~~~ 87 (435)
+.+.=.+..++.| .+.|.+|.+.... ......+..++.+..++..++ ... +. ....+..
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~-ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~--~~~~~~~ 93 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGG-TAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYP--NIIPGLE 93 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHH-HHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEES--S-SCCHH
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCH-HHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecc--cccHHHH
Confidence 5677788999999 8889999998873 221111112344444441000 000 00 1112222
Q ss_pred HHHHHHHH-------hcchHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEcccchH
Q 013836 88 ALLLSLNA-------KCIVPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTDSIA 152 (435)
Q Consensus 88 ~~~~~~~~-------~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~~~~ 152 (435)
.+-..+.- .....+...+.++.. .+.|+||.+.. +..+|+++|+|++.+.++.-.
T Consensus 94 ~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~-------~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 94 SIEELLGVDIKIYPYDSEEEIEAAIKQAKA-------EGVDVIVGGGV---VCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp HHHHHHT-EEEEEEESSHHHHHHHHHHHHH-------TT--EEEESHH---HHHHHHHTTSEEEESS--HHH
T ss_pred HHHHHhCCceEEEEECCHHHHHHHHHHHHH-------cCCcEEECCHH---HHHHHHHcCCcEEEEEecHHH
Confidence 22222210 122345556777766 67999999963 478999999999887665433
No 267
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.51 E-value=42 Score=31.45 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=37.6
Q ss_pred cCCccceEeeccCccchHHHHhh----CCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHHHHHHHHHHHHcC
Q 013836 323 AHPAVGCFWTHSGWNSTLESICE----GIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERKEIERAILRVMVK 394 (435)
Q Consensus 323 ~~~~v~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~vl~~ 394 (435)
..+++ +|+=||=||+..+.+. ++|++.+-.. .+|- +. .++.+++.+++++++++
T Consensus 67 ~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~G--------------~lGF-Lt-~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 67 SSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINTG--------------HLGF-LT-EAYLNQLDEAIDQVLAG 124 (305)
T ss_pred cCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeCC--------------CCcc-cc-cCCHHHHHHHHHHHHcC
Confidence 34666 9999999999999874 7888876431 1111 11 35677888888888775
No 268
>PRK06180 short chain dehydrogenase; Provisional
Probab=36.28 E-value=61 Score=29.60 Aligned_cols=33 Identities=9% Similarity=0.033 Sum_probs=24.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
++.++++ |+.|.+ -..+++.|+++||+|+.+..
T Consensus 4 ~~~vlVt-Gasggi--G~~la~~l~~~G~~V~~~~r 36 (277)
T PRK06180 4 MKTWLIT-GVSSGF--GRALAQAALAAGHRVVGTVR 36 (277)
T ss_pred CCEEEEe-cCCChH--HHHHHHHHHhCcCEEEEEeC
Confidence 3455555 555644 56788899999999998876
No 269
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=35.98 E-value=76 Score=25.56 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=35.3
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
++.||++-..+..+|-.---=++..|...|++|.-....
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~ 39 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLF 39 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCC
Confidence 578999999999999999988899999999999988873
No 270
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=35.73 E-value=42 Score=29.50 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=21.6
Q ss_pred CCccEEEEcCch---hhHHHHHHH----cCCCeEEEccc
Q 013836 118 DSFACLITDAAW---FIALSVAND----FKLPTIVLLTD 149 (435)
Q Consensus 118 ~~~Dlvi~D~~~---~~~~~~A~~----~giP~v~~~~~ 149 (435)
..||+|++|... .-...+|-+ +|+|+|.+.=.
T Consensus 92 ~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVAK~ 130 (208)
T cd06559 92 TKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVAKS 130 (208)
T ss_pred CCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEEcc
Confidence 469999999854 223455544 56899886543
No 271
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=35.57 E-value=62 Score=29.49 Aligned_cols=39 Identities=13% Similarity=0.035 Sum_probs=33.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 53 (435)
|.|.+.-=|+-|--.-...||..|+++|++|.++=-+++
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq 39 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPK 39 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 678888777779999999999999999999999977643
No 272
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=35.30 E-value=3e+02 Score=23.93 Aligned_cols=38 Identities=11% Similarity=0.230 Sum_probs=30.6
Q ss_pred CEEEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 15 RRVILFPLPFQ-GHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 15 ~~il~~~~~~~-GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
-++-++..|.. |--.-++.-++....+|-.|.++++..
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~i 42 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAI 42 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccc
Confidence 34555555544 999999999999999999999999953
No 273
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=34.87 E-value=1.1e+02 Score=26.31 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=24.8
Q ss_pred cEEEEcCch-hhHHHHHHHcCCCeEEEcccch
Q 013836 121 ACLITDAAW-FIALSVANDFKLPTIVLLTDSI 151 (435)
Q Consensus 121 Dlvi~D~~~-~~~~~~A~~~giP~v~~~~~~~ 151 (435)
.++|...+. +++..+|+++|+|+|.+.|...
T Consensus 61 ~~liGSSlGG~~A~~La~~~~~~avLiNPav~ 92 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYGLPAVLINPAVR 92 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 577777776 8888999999999988766543
No 274
>PRK12342 hypothetical protein; Provisional
Probab=34.86 E-value=71 Score=29.06 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=23.3
Q ss_pred CccEEEEcCch------hhHHHHHHHcCCCeEEEcc
Q 013836 119 SFACLITDAAW------FIALSVANDFKLPTIVLLT 148 (435)
Q Consensus 119 ~~Dlvi~D~~~------~~~~~~A~~~giP~v~~~~ 148 (435)
.||+|++.--+ .-+..+|+.+|+|++.+..
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 59999976432 3378999999999998644
No 275
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=34.80 E-value=47 Score=30.85 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=24.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
|||+++=.|..| ..+|..|.+.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 577777665555 5678889999999999987
No 276
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=34.80 E-value=69 Score=30.43 Aligned_cols=40 Identities=18% Similarity=0.035 Sum_probs=30.5
Q ss_pred CCCCEEEEEcCCCccC----hHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 12 RNGRRVILFPLPFQGH----INPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 12 ~~~~~il~~~~~~~GH----v~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
|.|+||+++..|...- +.....++++|.+.||+|..+-..
T Consensus 1 m~~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~ 44 (333)
T PRK01966 1 MMKMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGIT 44 (333)
T ss_pred CCCcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEEC
Confidence 5688999888554432 345678899998999999988864
No 277
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=34.73 E-value=78 Score=25.59 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=34.6
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 14 GRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
+.+|++-+.++.+|-.=---++..|.+.|++|+.....
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~ 38 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVL 38 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCC
Confidence 36899999999999999988999999999999999884
No 278
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=34.49 E-value=67 Score=29.25 Aligned_cols=39 Identities=10% Similarity=-0.015 Sum_probs=33.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 53 (435)
|+|.+.-=|+-|--.-...||..|+++|++|.++=-+++
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q 39 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPK 39 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 678888666778889999999999999999999976544
No 279
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=34.49 E-value=2.3e+02 Score=24.48 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=45.1
Q ss_pred hhCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 013836 344 CEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERKEIERAILRVMVKADSQEMRERATYLNEKVD 412 (435)
Q Consensus 344 ~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~ 412 (435)
-...|+|.+--++|=+.-.+.... |+---+.+.++...|.++|++.+.. ..-+.+.....+.++
T Consensus 74 ~~~~PVIfiTGhgDIpmaV~AmK~--GAvDFLeKP~~~q~Lldav~~Al~~---~~~~~~~~~~~~~~~ 137 (202)
T COG4566 74 GIRLPVIFLTGHGDIPMAVQAMKA--GAVDFLEKPFSEQDLLDAVERALAR---DASRRAEADRQAAIR 137 (202)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHc--chhhHHhCCCchHHHHHHHHHHHHH---HHHHHHhHHHHHHHH
Confidence 346788888888887776555543 7777787789999999999999986 444444433333333
No 280
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=34.22 E-value=63 Score=32.40 Aligned_cols=87 Identities=10% Similarity=0.054 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEccC-CCCCCCCCCCCCCCCHHHHHHHHH-HhcchHHHHHHH
Q 013836 29 NPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSD-DGFSETYQPSKVADDIPALLLSLN-AKCIVPFRDCLA 106 (435)
Q Consensus 29 ~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~ 106 (435)
.=.+.|++.|.+.|.++. .|.. ....-+..|+.+..+.. .++|+.+.-...+.++. ...-+. +.-.+ + ++
T Consensus 11 ~~iv~lAk~L~~lGfeIi-ATgG--Tak~L~e~GI~v~~Vsk~TgfPEil~GRVKTLHP~-IhgGiLarr~~~---~-~~ 82 (511)
T TIGR00355 11 TGIVEFAQGLVERGVELL-STGG--TAKLLAEAGVPVTEVSDYTGFPEMMDGRVKTLHPK-VHGGILARRGDD---D-DA 82 (511)
T ss_pred ccHHHHHHHHHHCCCEEE-Eech--HHHHHHHCCCeEEEeecccCCchhhCCccccCCch-hhhhhhcCCCch---H-HH
Confidence 346789999999999995 3331 12222236787777775 56666533223333433 222222 22222 2 44
Q ss_pred HHHhccCCcCCCCccEEEEcC
Q 013836 107 NKLMSNAQESKDSFACLITDA 127 (435)
Q Consensus 107 ~l~~~~~~~~~~~~Dlvi~D~ 127 (435)
++.+..- ...|+||++.
T Consensus 83 ~l~~~~I----~~IDlVvvNL 99 (511)
T TIGR00355 83 DLEEHGI----EPIDLVVVNL 99 (511)
T ss_pred HHHHcCC----CceeEEEEec
Confidence 4444332 5789999984
No 281
>PRK06321 replicative DNA helicase; Provisional
Probab=34.07 E-value=2.7e+02 Score=28.03 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=29.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCC
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYS-EGFSITIIHTT 51 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~-rGH~Vt~~~~~ 51 (435)
=+++.-.|+.|--...+.+|...+. .|..|.|++-+
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLE 264 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLE 264 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 3456677888999999999999874 59999999884
No 282
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.00 E-value=81 Score=29.41 Aligned_cols=54 Identities=15% Similarity=0.094 Sum_probs=39.1
Q ss_pred cCCccceEeeccCccchHHHHhh----CCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHHHHHHHHHHHHcC
Q 013836 323 AHPAVGCFWTHSGWNSTLESICE----GIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERKEIERAILRVMVK 394 (435)
Q Consensus 323 ~~~~v~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~vl~~ 394 (435)
..+++ +|.=||-||+.++++. ++|++.+... + +| -+. ..+.+++.++|++++++
T Consensus 61 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G-----------~-lG---Fl~-~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 61 EVCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG-----------R-LG---FLT-DIRPDELEFKLAEVLDG 118 (295)
T ss_pred cCCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC-----------c-cc---ccc-cCCHHHHHHHHHHHHcC
Confidence 34666 9999999999999763 6788877652 1 22 112 47788899999998876
No 283
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.96 E-value=1.2e+02 Score=25.31 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=31.4
Q ss_pred HHHHHHHHHhccCCcCCCCccEEEEcCch----------hhHHHHHHHcCCCeEEEcccc
Q 013836 101 FRDCLANKLMSNAQESKDSFACLITDAAW----------FIALSVANDFKLPTIVLLTDS 150 (435)
Q Consensus 101 l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~----------~~~~~~A~~~giP~v~~~~~~ 150 (435)
+++.+.++.... -|+.||+|++..-+ .-+..+|+++|+|++-.+...
T Consensus 109 vrnWlSQL~~hA---YcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t 165 (219)
T KOG0081|consen 109 VRNWLSQLQTHA---YCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT 165 (219)
T ss_pred HHHHHHHHHHhh---ccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence 345666666432 12789999986532 345679999999988665443
No 284
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=33.87 E-value=52 Score=32.10 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
+.+||++.-.|+.+= .-...+.+.|.+.|++|.++.++.
T Consensus 2 ~~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~ 40 (390)
T TIGR00521 2 ENKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEA 40 (390)
T ss_pred CCCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHh
Confidence 457888777665544 558999999999999999999953
No 285
>PRK00784 cobyric acid synthase; Provisional
Probab=33.71 E-value=4.3e+02 Score=26.65 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=26.8
Q ss_pred EEEEcCCC-ccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 17 VILFPLPF-QGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 17 il~~~~~~-~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
|++....+ -|--.-...|++.|.++|++|..+-+
T Consensus 5 ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 5 LMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 44443333 39999999999999999999997766
No 286
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=33.18 E-value=2.2e+02 Score=29.12 Aligned_cols=41 Identities=12% Similarity=0.250 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHHHHHHcCCCeEEEccc
Q 013836 99 VPFRDCLANKLMSNAQESKDSFACLITDAAWFIALSVANDFKLPTIVLLTD 149 (435)
Q Consensus 99 ~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~~ 149 (435)
......+.++++ .+.++||.|. .+..+|+++|++.|.+...
T Consensus 132 ~e~~~~~~~l~~-------~G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 132 EDARSCVNDLRA-------RGIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHHHH-------CCCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 344556777776 6799999996 3578999999999987664
No 287
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=33.15 E-value=58 Score=27.76 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=26.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
||++.-.|+. ...-...+.+.|.++|++|.++.++
T Consensus 2 ~I~lgvtGs~-~a~~~~~ll~~L~~~g~~V~vi~T~ 36 (177)
T TIGR02113 2 KILLAVTGSI-AAYKAADLTSQLTKLGYDVTVLMTQ 36 (177)
T ss_pred EEEEEEcCHH-HHHHHHHHHHHHHHCCCEEEEEECh
Confidence 4555555544 4556679999999999999999995
No 288
>PLN02240 UDP-glucose 4-epimerase
Probab=32.99 E-value=71 Score=30.31 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 12 RNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
|..++|++. |+.|.+- ..|++.|.++||+|+.+..
T Consensus 3 ~~~~~vlIt--GatG~iG--~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 3 LMGRTILVT--GGAGYIG--SHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCCCEEEEE--CCCChHH--HHHHHHHHHCCCEEEEEeC
Confidence 444565553 6777664 4568999999999999864
No 289
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=32.91 E-value=96 Score=28.83 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=35.1
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 53 (435)
|||++.-=|+-|--.-.+.||..|+++|++|.++--+++
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 678888888889999999999999999999999988654
No 290
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=32.89 E-value=79 Score=33.20 Aligned_cols=46 Identities=20% Similarity=0.181 Sum_probs=31.0
Q ss_pred CCCCCCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 7 PCKLPRNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 7 ~~~~~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
|....-.++|++++..-=.=.+.-+=....+|+++||+|+++.-..
T Consensus 362 ~~~~~~~~~rvLv~spHPDDevi~~GGTlarl~~~G~~V~vv~~Ts 407 (652)
T PRK02122 362 PERALPYPKRVIIFSPHPDDDVISMGGTFRRLVEQGHDVHVAYQTS 407 (652)
T ss_pred CcccccCCceEEEEEeCCCchHhhhHHHHHHHHHCCCcEEEEEecC
Confidence 3333334567665553333467777778899999999999987743
No 291
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=32.83 E-value=44 Score=28.39 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=23.6
Q ss_pred cCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHH
Q 013836 323 AHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNS 362 (435)
Q Consensus 323 ~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na 362 (435)
..+++ +|+.||...+..... ++|+|-+|...-=...|
T Consensus 33 ~g~dV--iIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~a 69 (176)
T PF06506_consen 33 EGADV--IISRGGTAELLRKHV-SIPVVEIPISGFDILRA 69 (176)
T ss_dssp TT-SE--EEEEHHHHHHHHCC--SS-EEEE---HHHHHHH
T ss_pred cCCeE--EEECCHHHHHHHHhC-CCCEEEECCCHhHHHHH
Confidence 34555 999999999888877 99999999855333333
No 292
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=32.80 E-value=62 Score=31.69 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=32.1
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 12 RNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
++++||++.-.|+. ...=...|.+.|.++|++|.++.++.
T Consensus 4 l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~ 43 (399)
T PRK05579 4 LAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEA 43 (399)
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHh
Confidence 45678888776655 45577899999999999999999953
No 293
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=32.59 E-value=62 Score=27.51 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=22.8
Q ss_pred ccChHH-HHHHHHHHHh-CCCeEEEEeCC
Q 013836 25 QGHINP-MLQLGSILYS-EGFSITIIHTT 51 (435)
Q Consensus 25 ~GHv~p-~l~La~~L~~-rGH~Vt~~~~~ 51 (435)
.||... .+.+.++|.+ +||+|.++.++
T Consensus 9 sg~~l~e~v~~l~~L~~~~g~eV~vv~S~ 37 (174)
T TIGR02699 9 SGDKLPETYSIMKDVKNRYGDEIDVFLSK 37 (174)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEECH
Confidence 378766 8899999985 59999999995
No 294
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=32.57 E-value=75 Score=30.33 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=30.3
Q ss_pred CCCCEEEEEcCCCccC----hHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 12 RNGRRVILFPLPFQGH----INPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 12 ~~~~~il~~~~~~~GH----v~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
|.|+||+++..|..+- +.....++++|.+.||+|..+...
T Consensus 1 m~~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~~i~i~ 44 (343)
T PRK14568 1 MNRIKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPFYIGIT 44 (343)
T ss_pred CCCcEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEEEEEEC
Confidence 4678999998654432 455678889998899999988763
No 295
>PRK06179 short chain dehydrogenase; Provisional
Probab=32.48 E-value=76 Score=28.72 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=24.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
.+.++++ |+.|-+ -..++++|+++|++|+.++-.
T Consensus 4 ~~~vlVt-Gasg~i--G~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 4 SKVALVT-GASSGI--GRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CCEEEEe-cCCCHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 3455565 455555 468899999999999888763
No 296
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=32.39 E-value=3.2e+02 Score=27.00 Aligned_cols=42 Identities=12% Similarity=0.161 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~ 54 (435)
++..|+++=.-+.|-..-.-.||+.|.++|+.|-+++.+...
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R 140 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR 140 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC
Confidence 356777888888899999999999999999999999997443
No 297
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.38 E-value=96 Score=28.89 Aligned_cols=57 Identities=12% Similarity=0.045 Sum_probs=38.9
Q ss_pred hhhcCCccceEeeccCccchHHHHh----hCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHHHHHHHHHHHHcC
Q 013836 320 QVLAHPAVGCFWTHSGWNSTLESIC----EGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERKEIERAILRVMVK 394 (435)
Q Consensus 320 ~ll~~~~v~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~vl~~ 394 (435)
++...+++ +|+=||-||+..+++ +++|++.+-... +|. +. .++++++.+++++++++
T Consensus 59 ~~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G~------------lGF---l~-~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 59 EIGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINRGN------------LGF---LT-DLDPDNALQQLSDVLEG 119 (292)
T ss_pred hcCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECCC------------CCc---cc-ccCHHHHHHHHHHHHcC
Confidence 34345677 999999999999985 367777654411 122 11 35678888888888876
No 298
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=32.35 E-value=53 Score=27.65 Aligned_cols=44 Identities=16% Similarity=0.229 Sum_probs=28.9
Q ss_pred CCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEcc
Q 013836 22 LPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFS 69 (435)
Q Consensus 22 ~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~ 69 (435)
.|+.|++- ..|+++|.++||+|+.++-....... ..+++++...
T Consensus 4 ~GatG~vG--~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d 47 (183)
T PF13460_consen 4 FGATGFVG--RALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGD 47 (183)
T ss_dssp ETTTSHHH--HHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESC
T ss_pred ECCCChHH--HHHHHHHHHCCCEEEEEecCchhccc--ccccccceee
Confidence 35666654 45899999999999999984321111 3566655444
No 299
>CHL00194 ycf39 Ycf39; Provisional
Probab=32.17 E-value=73 Score=29.85 Aligned_cols=32 Identities=13% Similarity=0.274 Sum_probs=23.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
|+|+++ |+.|.+- ..|+++|.++||+|+.++-
T Consensus 1 MkIlVt--GatG~iG--~~lv~~Ll~~g~~V~~l~R 32 (317)
T CHL00194 1 MSLLVI--GATGTLG--RQIVRQALDEGYQVRCLVR 32 (317)
T ss_pred CEEEEE--CCCcHHH--HHHHHHHHHCCCeEEEEEc
Confidence 466654 6666544 4578899999999999875
No 300
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=32.02 E-value=64 Score=28.37 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=30.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
+-|++.-.|+.|-....-.|+++|.+++|+|..++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 345666678889999999999999999999987766
No 301
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=32.00 E-value=64 Score=31.76 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=27.1
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 12 RNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
|+.|||.|+=.|..| ..+|..|+++||+|+.+-..
T Consensus 1 m~~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 1 MSFETISVIGLGYIG-----LPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred CCccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeCC
Confidence 556888887554444 57899999999999998764
No 302
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=31.95 E-value=34 Score=29.71 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=25.9
Q ss_pred CccEEE-EcCch-hhHHHHHHHcCCCeEEEcccchHH
Q 013836 119 SFACLI-TDAAW-FIALSVANDFKLPTIVLLTDSIAA 153 (435)
Q Consensus 119 ~~Dlvi-~D~~~-~~~~~~A~~~giP~v~~~~~~~~~ 153 (435)
.||+|| .|+.. .-+..=|.++|||+|.+..+..-+
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~dp 144 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDTDNPL 144 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCCCC
Confidence 588777 56544 667788999999999987764443
No 303
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=31.62 E-value=70 Score=30.11 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=25.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
|||+|+-.+. ..+...++|.++||+|..+.+.+
T Consensus 1 mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~p 33 (313)
T TIGR00460 1 LRIVFFGTPT-----FSLPVLEELREDNFEVVGVVTQP 33 (313)
T ss_pred CEEEEECCCH-----HHHHHHHHHHhCCCcEEEEEcCC
Confidence 6888885543 34777889999999998877744
No 304
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=31.56 E-value=85 Score=29.81 Aligned_cols=74 Identities=14% Similarity=0.076 Sum_probs=40.3
Q ss_pred cEEEEEeccccCccccCCCchhhHhhhcCCceEEeecchhhhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchh
Q 013836 280 SVIYVSFGLARGAEWLEPLPKGILEMVDGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQM 359 (435)
Q Consensus 280 ~vV~vs~G~v~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~ 359 (435)
.+.+||-|-+...+ -|+.+......+....+ +...+-|...+. .++|||+.... +..-|-.++|+
T Consensus 229 kIALVTtGGivPkg----nPD~i~ss~a~~~g~Y~-I~~~~~l~~~~~--~~~HgGYD~~~---an~D~N~v~Pl----- 293 (349)
T PF07355_consen 229 KIALVTTGGIVPKG----NPDRIESSSATKYGKYD-ISGMDDLSSDDY--MTIHGGYDPAY---ANEDPNRVFPL----- 293 (349)
T ss_pred EEEEEeccCcccCC----CCCccCCCCCCCceeee-CcCcCCCCccce--EeeccccChhH---hccCCCeeeeH-----
Confidence 38889988543322 34444322112111111 222233545566 99999998765 34778888886
Q ss_pred HHHHHHHhh
Q 013836 360 VNSRYVSHA 368 (435)
Q Consensus 360 ~na~~v~~~ 368 (435)
+-.+.+++.
T Consensus 294 D~LreL~~E 302 (349)
T PF07355_consen 294 DRLRELEKE 302 (349)
T ss_pred HHHHHHHHc
Confidence 334555553
No 305
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.30 E-value=37 Score=31.12 Aligned_cols=53 Identities=9% Similarity=0.214 Sum_probs=35.1
Q ss_pred CCccceEeeccCccchHHHHh------hCCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHHHHHHHHHHHHcC
Q 013836 324 HPAVGCFWTHSGWNSTLESIC------EGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERKEIERAILRVMVK 394 (435)
Q Consensus 324 ~~~v~~~I~HGG~gs~~eal~------~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~vl~~ 394 (435)
.+++ +|+-||-||+..+++ .++|++.+-.. .+|--. ..+++++.+.+++++++
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G--------------~lGFL~--~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHTG--------------HLGFYT--DWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeCC--------------Cceecc--cCCHHHHHHHHHHHHcC
Confidence 4566 999999999999986 47888877541 111111 34556666666666654
No 306
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=31.26 E-value=61 Score=22.47 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=17.3
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 013836 32 LQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 32 l~La~~L~~rGH~Vt~~~~~ 51 (435)
+..|..|.++|++|+++-..
T Consensus 9 l~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCcEEEEecC
Confidence 56788999999999999874
No 307
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=31.17 E-value=83 Score=30.35 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=26.5
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
++|+|++. |+.|.+- ..|++.|.++||+|+.+.-
T Consensus 20 ~~~~IlVt--GgtGfIG--~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 20 EKLRICIT--GAGGFIA--SHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCEEEEE--CCccHHH--HHHHHHHHhCCCEEEEEEe
Confidence 46888766 6666653 5689999999999999875
No 308
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=31.02 E-value=46 Score=31.15 Aligned_cols=38 Identities=24% Similarity=0.153 Sum_probs=31.3
Q ss_pred hhhcCCccceEeeccCccchHHHHh----hCCCeeeccCCCc
Q 013836 320 QVLAHPAVGCFWTHSGWNSTLESIC----EGIPMICQPYFGD 357 (435)
Q Consensus 320 ~ll~~~~v~~~I~HGG~gs~~eal~----~GvP~v~~P~~~D 357 (435)
+-|..-++.++|.=||-||+.-|.. +++|+|++|-+-|
T Consensus 85 ~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTID 126 (301)
T TIGR02482 85 ENLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTID 126 (301)
T ss_pred HHHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeeccccc
Confidence 4566778888999999999977753 7999999997655
No 309
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=30.94 E-value=1e+02 Score=31.08 Aligned_cols=56 Identities=16% Similarity=0.161 Sum_probs=33.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEccC-CCCCCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSD-DGFSET 76 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 76 (435)
|+=++++..- -.=++.|++.|.+.|+++. .|. . ....-+..|+.+..+.. .++|+.
T Consensus 4 ~~~aLISVsD---K~~iv~lAk~L~~lGfeI~-AT~-G-Tak~L~e~GI~v~~V~k~TgfpEi 60 (513)
T PRK00881 4 IKRALISVSD---KTGIVEFAKALVELGVEIL-STG-G-TAKLLAEAGIPVTEVSDVTGFPEI 60 (513)
T ss_pred cCEEEEEEeC---cccHHHHHHHHHHCCCEEE-Ecc-h-HHHHHHHCCCeeEEeecccCCchh
Confidence 3334444433 4447899999999999994 332 1 11222235787777774 566665
No 310
>PRK05993 short chain dehydrogenase; Provisional
Probab=30.80 E-value=76 Score=28.96 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 14 GRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
.++.++++.+ .|-+- ..++++|+++|++|+++..
T Consensus 3 ~~k~vlItGa-sggiG--~~la~~l~~~G~~Vi~~~r 36 (277)
T PRK05993 3 MKRSILITGC-SSGIG--AYCARALQSDGWRVFATCR 36 (277)
T ss_pred CCCEEEEeCC-CcHHH--HHHHHHHHHCCCEEEEEEC
Confidence 3556666643 34332 5678999999999988865
No 311
>PLN02253 xanthoxin dehydrogenase
Probab=30.75 E-value=99 Score=28.15 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=23.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
|.++++ |+.|.+ -..++++|+++|++|+++..
T Consensus 19 k~~lIt-Gas~gI--G~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 19 KVALVT-GGATGI--GESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred CEEEEE-CCCchH--HHHHHHHHHHcCCEEEEEeC
Confidence 455666 455555 36788999999999998865
No 312
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=30.64 E-value=1.2e+02 Score=23.64 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=33.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
||++.--++.|--.....+++.|+++|.+|.++..+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888888999999999999999999999999865
No 313
>PRK05246 glutathione synthetase; Provisional
Probab=30.52 E-value=66 Score=30.31 Aligned_cols=37 Identities=8% Similarity=0.028 Sum_probs=30.0
Q ss_pred CEEEEEcCCCc---cChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 15 RRVILFPLPFQ---GHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 15 ~~il~~~~~~~---GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
|||+|+.-|-. -......+|+++-.++||+|.++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~ 41 (316)
T PRK05246 2 MKVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPD 41 (316)
T ss_pred ceEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehh
Confidence 78888876543 44566788999999999999999994
No 314
>PRK08760 replicative DNA helicase; Provisional
Probab=30.42 E-value=2.6e+02 Score=28.21 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=29.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEeCC
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYS-EGFSITIIHTT 51 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~-rGH~Vt~~~~~ 51 (435)
=+++...|+.|--.-.+.+|...+. .|+.|.+++.+
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlE 267 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSME 267 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEecc
Confidence 3556677888999999999998875 49999999884
No 315
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=30.24 E-value=1.2e+02 Score=28.21 Aligned_cols=42 Identities=17% Similarity=0.063 Sum_probs=32.5
Q ss_pred CCCCEEE-EEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 013836 12 RNGRRVI-LFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (435)
Q Consensus 12 ~~~~~il-~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 53 (435)
|.|||++ |..=|+-|--.-...||-.|+++|++|.++-.+++
T Consensus 1 ~~~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q 43 (295)
T PRK13234 1 MSKLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPK 43 (295)
T ss_pred CCcceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 4566665 44445558888999999999999999999977554
No 316
>PLN02712 arogenate dehydrogenase
Probab=30.21 E-value=60 Score=34.24 Aligned_cols=44 Identities=11% Similarity=0.198 Sum_probs=33.8
Q ss_pred CccCCCCCCCCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 2 ETQQDPCKLPRNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 2 ~~~~~~~~~~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
|++...+....++|+|+|+=.|..|. .+|+.|.+.||+|+.+..
T Consensus 357 ~~~~~~~~~~~~~~kIgIIGlG~mG~-----slA~~L~~~G~~V~~~dr 400 (667)
T PLN02712 357 NAQVSGCVNDGSKLKIAIVGFGNFGQ-----FLAKTMVKQGHTVLAYSR 400 (667)
T ss_pred cchhhhccCCCCCCEEEEEecCHHHH-----HHHHHHHHCcCEEEEEEC
Confidence 45566777777899999996554443 788999999999997766
No 317
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=30.06 E-value=39 Score=29.53 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=25.8
Q ss_pred CccEEE-EcCch-hhHHHHHHHcCCCeEEEcccchHH
Q 013836 119 SFACLI-TDAAW-FIALSVANDFKLPTIVLLTDSIAA 153 (435)
Q Consensus 119 ~~Dlvi-~D~~~-~~~~~~A~~~giP~v~~~~~~~~~ 153 (435)
.||+|| .|+.. .-+..=|.++|||+|.+..+..-+
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~dp 150 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDNLT 150 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCCCc
Confidence 488877 55544 666778899999999987665444
No 318
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=29.93 E-value=61 Score=30.14 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=25.0
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
|||+++=.|+.| ..+|..|+++||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 678888666655 4578889999999999987
No 319
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=29.77 E-value=43 Score=30.30 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=22.8
Q ss_pred CccceEeeccCccchHHHHhh----CCCeeeccC
Q 013836 325 PAVGCFWTHSGWNSTLESICE----GIPMICQPY 354 (435)
Q Consensus 325 ~~v~~~I~HGG~gs~~eal~~----GvP~v~~P~ 354 (435)
+++ +|+-||=||+..+++. ++|++.+-.
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 566 9999999999988764 678887764
No 320
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=29.76 E-value=1.1e+02 Score=27.52 Aligned_cols=41 Identities=15% Similarity=0.002 Sum_probs=27.3
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 11 PRNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 11 ~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
.+..++|+++.---.=-..-+-+....|.++||+|++++-.
T Consensus 7 ~~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~lT 47 (237)
T COG2120 7 MLDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCLT 47 (237)
T ss_pred cccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEcc
Confidence 34467777665322233344556667789999999999984
No 321
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=29.63 E-value=1.6e+02 Score=31.51 Aligned_cols=128 Identities=9% Similarity=0.001 Sum_probs=0.0
Q ss_pred CCccCCCCCCCCCCCEEEEEcCCCc-cChHHHH-HHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEccCCCCCCCCC
Q 013836 1 METQQDPCKLPRNGRRVILFPLPFQ-GHINPML-QLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSDDGFSETYQ 78 (435)
Q Consensus 1 ~~~~~~~~~~~~~~~~il~~~~~~~-GHv~p~l-~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (435)
+.+...+...+.+++||++++.|+. .=+|..+ ++.+.-..+||+|.-+-..+.--...+...++...+. .-...+
T Consensus 376 ~~~~~~~~~~~~~~~~IaIltsGG~apGmNaairavv~~a~~~g~~v~gi~~G~~GL~~~~~~~l~~~~v~-~~~~~G-- 452 (762)
T cd00764 376 LAIELPQPLPEKTNLNIAIVNVGAPAAGMNAAVRSAVRYGLAHGHRPYAIYDGFEGLAKGQIVELGWIDVG-GWTGRG-- 452 (762)
T ss_pred ccccCCccCCcccccEEEEEecCCCchhHHHHHHHHHHHHHHCCCEEEEEecCHHHhcCCCcccCCHHHHH-HHHhCC--
Q ss_pred CCCCCCCHHHHHHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEE---EcCchhhHHHHHHH------cCCCeEEE
Q 013836 79 PSKVADDIPALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLI---TDAAWFIALSVAND------FKLPTIVL 146 (435)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi---~D~~~~~~~~~A~~------~giP~v~~ 146 (435)
...+..-+..-...+..+.+.+.+ .+.|.+| -|.....+..+++. ++||+|.+
T Consensus 453 --------Gt~LGT~R~~~~~~~~~i~~~l~~-------~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgI 514 (762)
T cd00764 453 --------GSELGTKRTLPKKDLETIAYNFQK-------YGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLI 514 (762)
T ss_pred --------cccccccCCCcHHHHHHHHHHHHH-------cCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEe
No 322
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.51 E-value=77 Score=30.96 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=29.7
Q ss_pred CCEEEEEcCCC---ccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 14 GRRVILFPLPF---QGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 14 ~~~il~~~~~~---~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
+.++.|=|.+. -||+.|+..| +.|++.||+|+++..+
T Consensus 34 ~~Y~GfDPTa~slHlGhlv~l~kL-~~fQ~aGh~~ivLigd 73 (401)
T COG0162 34 RVYIGFDPTAPSLHLGHLVPLMKL-RRFQDAGHKPIVLIGD 73 (401)
T ss_pred eEEEeeCCCCCccchhhHHHHHHH-HHHHHCCCeEEEEecc
Confidence 56778888772 2999988876 5689999999999984
No 323
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=29.33 E-value=68 Score=28.55 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=23.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
|+++++=.|-.| ..||+.|.+.||+|+.+-.+.
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcCH
Confidence 445554443333 679999999999999998853
No 324
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=29.33 E-value=1.3e+02 Score=23.65 Aligned_cols=33 Identities=12% Similarity=0.279 Sum_probs=27.6
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 18 ILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 18 l~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
+++..|..++-.-+..+++.|+++|+.|..+..
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~ 34 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDY 34 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 566667777788899999999999999998844
No 325
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=29.33 E-value=86 Score=27.27 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=26.9
Q ss_pred CCCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 013836 10 LPRNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIH 49 (435)
Q Consensus 10 ~~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~ 49 (435)
.+++.+++++.-+|. .-..+++.|.+.||+|++..
T Consensus 24 ~~l~gk~v~I~G~G~-----vG~~~A~~L~~~G~~Vvv~D 58 (200)
T cd01075 24 DSLEGKTVAVQGLGK-----VGYKLAEHLLEEGAKLIVAD 58 (200)
T ss_pred CCCCCCEEEEECCCH-----HHHHHHHHHHHCCCEEEEEc
Confidence 456778988887754 34678999999999999543
No 326
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=29.24 E-value=51 Score=30.71 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=36.9
Q ss_pred hhcCCccceEeeccCccchHHHHhh----CCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHHHHHHHHHHHHcC
Q 013836 321 VLAHPAVGCFWTHSGWNSTLESICE----GIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERKEIERAILRVMVK 394 (435)
Q Consensus 321 ll~~~~v~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~vl~~ 394 (435)
+-..+++ +|+-||-||+.++++. ++|++.+-.. .+|. +. ..+.+++.++|++++++
T Consensus 60 ~~~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~G--------------~lGF-L~-~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 60 IGARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINHG--------------RLGF-IT-DIPLDDMQETLPPMLAG 119 (291)
T ss_pred hccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------Cccc-cc-cCCHHHHHHHHHHHHcC
Confidence 3345677 9999999999999874 6677765521 1111 11 35667777777777665
No 327
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.07 E-value=2.7e+02 Score=23.38 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=40.0
Q ss_pred hhHHHHHHHhhhccEEEeCC-cCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 013836 358 QMVNSRYVSHAWRVGLQLEG-KLERKEIERAILRVMVKADSQEMRERATYLNEKV 411 (435)
Q Consensus 358 Q~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~ 411 (435)
+..|+++.++ .|.=..+.- ..+.++|.++..+-|+|.+..+++.++..+.+..
T Consensus 110 ~~LN~aY~~r-FgfPfI~aVkg~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~rIA 163 (176)
T COG3195 110 TELNAAYVER-FGFPFIIAVKGNTKDTILAAFERRLDNDREQEFATALAEIERIA 163 (176)
T ss_pred HHHHHHHHHh-cCCceEEeecCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 4679999999 798876654 6889999999999999855566666665555443
No 328
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=29.06 E-value=68 Score=30.03 Aligned_cols=34 Identities=9% Similarity=0.201 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
.+|||.|+=.|..| .++|+.|.++||+|++....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 35889998766666 57899999999999988763
No 329
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=28.92 E-value=3.6e+02 Score=27.26 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=24.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSE--GFSITIIHT 50 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~r--GH~Vt~~~~ 50 (435)
||||++-.|++.| +|+++|.+. |++|.++-.
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 7999988888777 567777776 999988854
No 330
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=28.88 E-value=1.9e+02 Score=24.95 Aligned_cols=59 Identities=7% Similarity=0.097 Sum_probs=41.9
Q ss_pred eccCCCchhHHHHHHHhhhccEEEeCC-------------cCCHHHHH----HHHHHHHcCCchHHHHHHHHHHHHHHH
Q 013836 351 CQPYFGDQMVNSRYVSHAWRVGLQLEG-------------KLERKEIE----RAILRVMVKADSQEMRERATYLNEKVD 412 (435)
Q Consensus 351 ~~P~~~DQ~~na~~v~~~~G~g~~~~~-------------~~~~~~l~----~~i~~vl~~~~~~~~~~~a~~l~~~~~ 412 (435)
+.|.+-||..--..+-+..-+|++-.. .++++.++ +.|.++|.| +.+-++-+++.+.+.
T Consensus 22 G~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d---~~IIRnr~KI~Avi~ 97 (187)
T PRK10353 22 GVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQD---AGIIRHRGKIQAIIG 97 (187)
T ss_pred CCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcC---chhHHhHHHHHHHHH
Confidence 456788998887665555678887431 47788876 789999999 677666666666555
No 331
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=28.83 E-value=47 Score=26.79 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCC
Q 013836 29 NPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 29 ~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
--.+=|+..|.++||+|++.+++
T Consensus 14 p~alYl~~~Lk~~G~~v~Va~np 36 (139)
T PF09001_consen 14 PSALYLSYKLKKKGFEVVVAGNP 36 (139)
T ss_dssp HHHHHHHHHHHCTTEEEEEEE-H
T ss_pred HHHHHHHHHHHhcCCeEEEecCH
Confidence 34677889999999999999995
No 332
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=28.79 E-value=89 Score=27.52 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=28.3
Q ss_pred HHHHHhccCCcCCCCccEEEEcCch--hhHHHHHHHcCCCeEEEcccch
Q 013836 105 LANKLMSNAQESKDSFACLITDAAW--FIALSVANDFKLPTIVLLTDSI 151 (435)
Q Consensus 105 l~~l~~~~~~~~~~~~Dlvi~D~~~--~~~~~~A~~~giP~v~~~~~~~ 151 (435)
++.+.. -+||+||..... .....-....++|++.+.....
T Consensus 53 ~E~i~~-------l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~ 94 (238)
T PF01497_consen 53 LEAILA-------LKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSP 94 (238)
T ss_dssp HHHHHH-------T--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTC
T ss_pred HHHHHh-------CCCCEEEEeccccchHHHHHHhcccceEEEeecccc
Confidence 466666 689999988655 4555666778999999877653
No 333
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=28.79 E-value=3.9e+02 Score=23.17 Aligned_cols=96 Identities=16% Similarity=0.192 Sum_probs=56.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC-----CC--CCceEEEccCCCCCCCCCCCCCCCCHHHH
Q 013836 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSC-----NY--PHFEFCSFSDDGFSETYQPSKVADDIPAL 89 (435)
Q Consensus 17 il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (435)
|.+++..+.|-..-.+.+|-+-..+|.+|.++---....... .. .++.++..+ +++.-. ..+...-
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~-~g~tw~------~~~~~~d 103 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMG-EGFTWE------TQDREAD 103 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhhccceeEEecC-CceeCC------CcCcHHH
Confidence 667777888998888888888888888888876521110100 11 346676666 444322 1111111
Q ss_pred HHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchh
Q 013836 90 LLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWF 130 (435)
Q Consensus 90 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~ 130 (435)
. ..+...+....+.+.+ .++|+||.|-+++
T Consensus 104 ~----~aa~~~w~~a~~~l~~-------~~ydlviLDEl~~ 133 (198)
T COG2109 104 I----AAAKAGWEHAKEALAD-------GKYDLVILDELNY 133 (198)
T ss_pred H----HHHHHHHHHHHHHHhC-------CCCCEEEEehhhH
Confidence 1 3333344444555554 6899999998764
No 334
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=28.65 E-value=1.1e+02 Score=27.86 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=23.8
Q ss_pred CccEEEEcCch------hhHHHHHHHcCCCeEEEccc
Q 013836 119 SFACLITDAAW------FIALSVANDFKLPTIVLLTD 149 (435)
Q Consensus 119 ~~Dlvi~D~~~------~~~~~~A~~~giP~v~~~~~ 149 (435)
.||+|++..-+ .-+..+|+.+|+|++.+...
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 59999975422 45678999999999986543
No 335
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.58 E-value=2.1e+02 Score=21.16 Aligned_cols=37 Identities=11% Similarity=0.142 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhc-CCChHH
Q 013836 384 IERAILRVMVKADSQEMRERATYLNEKVDICLQQ-GGSSYQ 423 (435)
Q Consensus 384 l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~-~g~~~~ 423 (435)
...-++++.+| ..+-+|.++.++....++.. |.+..-
T Consensus 18 ~~~lL~~Ii~D---ttVPRNIRraA~~a~e~L~~e~e~p~v 55 (93)
T COG1698 18 VMQLLDEIIQD---TTVPRNIRRAAEEAKEALNNEGESPAV 55 (93)
T ss_pred HHHHHHHHHcc---ccccHHHHHHHHHHHHHHhCCCCCchh
Confidence 34455666777 57777777777766666555 544433
No 336
>PLN00016 RNA-binding protein; Provisional
Probab=28.53 E-value=72 Score=30.82 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=24.6
Q ss_pred CEEEEEc--CCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 15 RRVILFP--LPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 15 ~~il~~~--~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
++|+++. .|+.|.+- ..|+++|.++||+|+.++-.
T Consensus 53 ~~VLVt~~~~GatG~iG--~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIG--FYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred ceEEEEeccCCCceeEh--HHHHHHHHHCCCEEEEEecC
Confidence 5677651 24445544 45779999999999998873
No 337
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=28.53 E-value=3.3e+02 Score=22.24 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=30.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 17 il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
|++.-.++.|--.....++..|.++|++|.++..+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 456666677988999999999999999999998763
No 338
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=28.19 E-value=75 Score=30.46 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=27.1
Q ss_pred cCCCccChHHHHHHHHHHHh-CCCeEEEEeCC
Q 013836 21 PLPFQGHINPMLQLGSILYS-EGFSITIIHTT 51 (435)
Q Consensus 21 ~~~~~GHv~p~l~La~~L~~-rGH~Vt~~~~~ 51 (435)
.+==+|++-...+||+.|++ +|++|++...+
T Consensus 7 VIDNyGDIGV~WRLArqLa~e~g~~VrLwvDd 38 (371)
T TIGR03837 7 VVDNYGDIGVCWRLARQLAAEHGHQVRLWVDD 38 (371)
T ss_pred eecCCcchHHHHHHHHHHHHHhCCEEEEEECC
Confidence 33456999999999999998 59999999997
No 339
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=28.18 E-value=52 Score=26.96 Aligned_cols=99 Identities=11% Similarity=0.082 Sum_probs=62.2
Q ss_pred cCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCC-cCCHHHHHHHHHHHHcC-----------Cc-hHHH
Q 013836 334 SGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEG-KLERKEIERAILRVMVK-----------AD-SQEM 400 (435)
Q Consensus 334 GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~~~~l~~~i~~vl~~-----------~~-~~~~ 400 (435)
|+=-||.|-+----|+|+=.-..-+++|...+.+ |+-..+.+ ..+.++|.+++..+-.. +. |.-+
T Consensus 35 ~~RFTTfE~~El~~~~VvKkdg~Re~F~r~Kl~~--gl~~A~~KRpVs~e~ie~~v~~ie~~Lr~~g~~EV~S~~IG~~V 112 (156)
T COG1327 35 GERFTTFERAELRPLIVVKKDGRREPFDREKLRR--GLIRACEKRPVSSEQIEEAVSHIERQLRSSGEREVPSKEIGELV 112 (156)
T ss_pred ccccchhheeeeccceEECcCCCcCCCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 4445788887777788888888888999888877 77777777 79999998888776321 00 1222
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 013836 401 RERATYLNEKVDICLQQGGSSYQSLGRLTDHIMS 434 (435)
Q Consensus 401 ~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 434 (435)
-+..+++-+..---.+.--.+++.+++|.+.|++
T Consensus 113 M~~Lk~lD~VAYvRFASVYr~F~dv~~F~e~i~~ 146 (156)
T COG1327 113 MEELKKLDEVAYVRFASVYRSFKDVDDFEEEIEE 146 (156)
T ss_pred HHHHHhcchhhhhhhhhHhcccCCHHHHHHHHHH
Confidence 2233333222222222334456667777777665
No 340
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=28.11 E-value=97 Score=29.36 Aligned_cols=37 Identities=11% Similarity=0.240 Sum_probs=32.3
Q ss_pred EEEE--EcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 16 RVIL--FPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 16 ~il~--~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
-|.+ ++.|+.|-.--.+.|++.|.++|++|.+++-..
T Consensus 51 vIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGY 89 (325)
T PRK00652 51 VIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGY 89 (325)
T ss_pred EEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 4445 788999999999999999999999999998744
No 341
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=28.04 E-value=84 Score=26.14 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=25.7
Q ss_pred CCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 11 PRNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 11 ~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
..+..+|+++=.|. .....++.|.+.||+||++.+
T Consensus 10 ~l~~~~vlVvGGG~-----va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 10 NLHNKVVVIIGGGK-----IAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred EcCCCEEEEECCCH-----HHHHHHHHHHhCCCEEEEEcC
Confidence 34567777764432 237789999999999999965
No 342
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=28.01 E-value=4.8 Score=21.50 Aligned_cols=17 Identities=24% Similarity=0.612 Sum_probs=13.0
Q ss_pred CccchHHHHhhCCCeee
Q 013836 335 GWNSTLESICEGIPMIC 351 (435)
Q Consensus 335 G~gs~~eal~~GvP~v~ 351 (435)
|.|++.-.++.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888888888888765
No 343
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=27.96 E-value=1.3e+02 Score=26.03 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=23.9
Q ss_pred CCccEEEEcCch--hhHHHHHHHcCCCeEEEcc
Q 013836 118 DSFACLITDAAW--FIALSVANDFKLPTIVLLT 148 (435)
Q Consensus 118 ~~~Dlvi~D~~~--~~~~~~A~~~giP~v~~~~ 148 (435)
.++|+|++=... ..+..+|.++|+|+++..-
T Consensus 49 ~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK 81 (189)
T PRK09219 49 EGITKILTIEASGIAPAVMAALALGVPVVFAKK 81 (189)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 469999965432 6677899999999998643
No 344
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=27.85 E-value=1.1e+02 Score=22.31 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=28.1
Q ss_pred CEEEEEcCCCc--cChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 15 RRVILFPLPFQ--GHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 15 ~~il~~~~~~~--GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
.+++++|.... .+..-...+++.|.+.|..|.+-..
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 46888887653 4666788999999999999987543
No 345
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=27.85 E-value=4.6e+02 Score=26.52 Aligned_cols=106 Identities=13% Similarity=0.231 Sum_probs=66.7
Q ss_pred eEEeecchhhh---hcCCccceEee---ccCccchH-HHHhhCC----CeeeccCCCchhHHHHHHHhhhccEEEeCCcC
Q 013836 311 YIVKWAPQQQV---LAHPAVGCFWT---HSGWNSTL-ESICEGI----PMICQPYFGDQMVNSRYVSHAWRVGLQLEGKL 379 (435)
Q Consensus 311 ~~~~~~p~~~l---l~~~~v~~~I~---HGG~gs~~-eal~~Gv----P~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~ 379 (435)
++.+.+|+.++ +..++| ++. .-|+|-++ |.++++. |+|+--+.+ |. +. +.-++.+.+ .
T Consensus 365 ~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa--~~-l~~AllVNP-~ 433 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA--VE-LKGALLTNP-Y 433 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch--hh-cCCCEEECC-C
Confidence 45588887764 456777 443 45888554 9999987 444332221 11 33 455777787 8
Q ss_pred CHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 013836 380 ERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIM 433 (435)
Q Consensus 380 ~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 433 (435)
+.++++++|.++|+... .+=+++.+++.+.+.. -....=.+.+++.+.
T Consensus 434 d~~~~A~ai~~AL~m~~-~Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~ 481 (487)
T TIGR02398 434 DPVRMDETIYVALAMPK-AEQQARMREMFDAVNY-----YDVQRWADEFLAAVS 481 (487)
T ss_pred CHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 99999999999998732 4556666666666653 233444555555443
No 346
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=27.68 E-value=1.3e+02 Score=25.75 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=23.2
Q ss_pred CCccEEEEcCch--hhHHHHHHHcCCCeEEE
Q 013836 118 DSFACLITDAAW--FIALSVANDFKLPTIVL 146 (435)
Q Consensus 118 ~~~Dlvi~D~~~--~~~~~~A~~~giP~v~~ 146 (435)
.++|.|++=... ..+..+|.++|+|+|..
T Consensus 52 ~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 52 DGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred cCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 569999965432 56788999999999985
No 347
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=27.60 E-value=50 Score=31.23 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=26.7
Q ss_pred CCccEEEE-cCch-hhHHHHHHHcCCCeEEEcccchHHH
Q 013836 118 DSFACLIT-DAAW-FIALSVANDFKLPTIVLLTDSIAAS 154 (435)
Q Consensus 118 ~~~Dlvi~-D~~~-~~~~~~A~~~giP~v~~~~~~~~~~ 154 (435)
..||+||+ |... ..+..=|.++|||+|.+.-+..-+.
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~dp~ 189 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCDPD 189 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCCCcc
Confidence 36888874 5543 6677788999999999876654443
No 348
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=27.59 E-value=82 Score=32.66 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=22.7
Q ss_pred CccceEeeccCcc------chHHHHhhCCCeeecc
Q 013836 325 PAVGCFWTHSGWN------STLESICEGIPMICQP 353 (435)
Q Consensus 325 ~~v~~~I~HGG~g------s~~eal~~GvP~v~~P 353 (435)
+.| +++|.|-| .+++|.+.++|+|++.
T Consensus 64 ~gv--~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGV--CVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEE--EEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 445 88898876 7899999999999984
No 349
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=27.56 E-value=88 Score=28.00 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=22.6
Q ss_pred cCh-HHHHHHHHHHHhC--CCeEEEEeCC
Q 013836 26 GHI-NPMLQLGSILYSE--GFSITIIHTT 51 (435)
Q Consensus 26 GHv-~p~l~La~~L~~r--GH~Vt~~~~~ 51 (435)
|+. .=.+.|.+.|.++ ||+|.++-++
T Consensus 10 ~~~~~~~~~l~~~L~~~~~g~~V~vv~T~ 38 (234)
T TIGR02700 10 GHLLVESFQVMKELKREIEELRVSTFVSR 38 (234)
T ss_pred cHhHHHHHHHHHHHHhhcCCCeEEEEECh
Confidence 444 6789999999999 9999999995
No 350
>PRK09165 replicative DNA helicase; Provisional
Probab=27.48 E-value=2.3e+02 Score=28.76 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=27.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC---------------CCeEEEEeCC
Q 013836 17 VILFPLPFQGHINPMLQLGSILYSE---------------GFSITIIHTT 51 (435)
Q Consensus 17 il~~~~~~~GHv~p~l~La~~L~~r---------------GH~Vt~~~~~ 51 (435)
+++.-.|+.|--.-.+.+|...+.+ |..|.+++..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlE 269 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLE 269 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCc
Confidence 5566677889999999998888753 7889998874
No 351
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=26.98 E-value=20 Score=32.98 Aligned_cols=39 Identities=10% Similarity=0.228 Sum_probs=32.0
Q ss_pred ccCccchH--HHHhhCCCeeeccCCCchhHHHH-HHHhhhccE
Q 013836 333 HSGWNSTL--ESICEGIPMICQPYFGDQMVNSR-YVSHAWRVG 372 (435)
Q Consensus 333 HGG~gs~~--eal~~GvP~v~~P~~~DQ~~na~-~v~~~~G~g 372 (435)
=||||+++ -|-.+||=++++-++..|..+++ ++.. .|+.
T Consensus 80 GCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~-~gl~ 121 (283)
T COG2230 80 GCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAA-RGLE 121 (283)
T ss_pred CCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHH-cCCC
Confidence 57888654 56677999999999999999994 5777 5888
No 352
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=26.85 E-value=71 Score=23.00 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=20.2
Q ss_pred CCccEEEEcC--chhhHHHHHHHcCCCeEEEc
Q 013836 118 DSFACLITDA--AWFIALSVANDFKLPTIVLL 147 (435)
Q Consensus 118 ~~~Dlvi~D~--~~~~~~~~A~~~giP~v~~~ 147 (435)
.+.--||++. ....+..+|+.+|||++.-.
T Consensus 29 ~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~ 60 (80)
T PF00391_consen 29 QRVAGIVTEEGGPTSHAAILARELGIPAIVGV 60 (80)
T ss_dssp TTSSEEEESSSSTTSHHHHHHHHTT-EEEEST
T ss_pred hheEEEEEEcCCccchHHHHHHHcCCCEEEee
Confidence 3455666654 44677889999999998743
No 353
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=26.83 E-value=1.7e+02 Score=21.87 Aligned_cols=39 Identities=10% Similarity=0.036 Sum_probs=27.5
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 12 RNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
++..||++++..+.|--.-...+=+.+.++|.++.+-..
T Consensus 1 ~~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~ 39 (95)
T TIGR00853 1 MNETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAG 39 (95)
T ss_pred CCccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 466899999988775334445666777778888776665
No 354
>PRK12829 short chain dehydrogenase; Provisional
Probab=26.73 E-value=1.3e+02 Score=26.96 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 12 RNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
++.+++++. |+.|.+ -..+++.|.++||+|+.+.-
T Consensus 9 ~~~~~vlIt--Ga~g~i--G~~~a~~L~~~g~~V~~~~r 43 (264)
T PRK12829 9 LDGLRVLVT--GGASGI--GRAIAEAFAEAGARVHVCDV 43 (264)
T ss_pred cCCCEEEEe--CCCCcH--HHHHHHHHHHCCCEEEEEeC
Confidence 444565544 455666 36789999999999887775
No 355
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=26.70 E-value=51 Score=27.64 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=23.4
Q ss_pred CCccceEeeccCcc------chHHHHhhCCCeeeccC
Q 013836 324 HPAVGCFWTHSGWN------STLESICEGIPMICQPY 354 (435)
Q Consensus 324 ~~~v~~~I~HGG~g------s~~eal~~GvP~v~~P~ 354 (435)
.+.+ +++|+|-| .++||...++|+|++.-
T Consensus 60 ~~gv--~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 60 RPVA--VVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred CCEE--EEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 3555 88888876 67899999999999953
No 356
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=26.69 E-value=1.1e+02 Score=23.78 Aligned_cols=34 Identities=15% Similarity=0.011 Sum_probs=29.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 17 il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
++..+.++..|-....-++..|.++|++|.++..
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~ 35 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGV 35 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCC
Confidence 4666778889999999999999999999999865
No 357
>PRK07454 short chain dehydrogenase; Provisional
Probab=26.66 E-value=1.3e+02 Score=26.53 Aligned_cols=34 Identities=9% Similarity=0.088 Sum_probs=24.9
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 14 GRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
+||.++++ |+.|.+ -..|+++|.++|++|+++.-
T Consensus 5 ~~k~vlIt-G~sg~i--G~~la~~l~~~G~~V~~~~r 38 (241)
T PRK07454 5 SMPRALIT-GASSGI--GKATALAFAKAGWDLALVAR 38 (241)
T ss_pred CCCEEEEe-CCCchH--HHHHHHHHHHCCCEEEEEeC
Confidence 46666666 444533 46789999999999998875
No 358
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=26.60 E-value=76 Score=30.61 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=27.5
Q ss_pred cCCCccChHHHHHHHHHHHhC-CCeEEEEeCC
Q 013836 21 PLPFQGHINPMLQLGSILYSE-GFSITIIHTT 51 (435)
Q Consensus 21 ~~~~~GHv~p~l~La~~L~~r-GH~Vt~~~~~ 51 (435)
.+==+|++-...+||+.|+++ |++|++.+.+
T Consensus 7 VIDNfGDIGVcWRLArqLa~e~g~~VrLwvDd 38 (374)
T PF10093_consen 7 VIDNFGDIGVCWRLARQLAAEHGQQVRLWVDD 38 (374)
T ss_pred eccCCcchHHHHHHHHHHHHHhCCeEEEEECC
Confidence 333469999999999999998 9999999997
No 359
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=26.53 E-value=1.1e+02 Score=31.37 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=27.5
Q ss_pred CCCCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 9 KLPRNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 9 ~~~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
...++.-++++++ |+.|.+ -..++++|+++||+|+.+.-
T Consensus 74 ~~~~~~gKvVLVT-GATGgI--G~aLAr~LLk~G~~Vval~R 112 (576)
T PLN03209 74 ELDTKDEDLAFVA-GATGKV--GSRTVRELLKLGFRVRAGVR 112 (576)
T ss_pred ccccCCCCEEEEE-CCCCHH--HHHHHHHHHHCCCeEEEEeC
Confidence 3444455666665 556655 56778999999999998765
No 360
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=26.43 E-value=90 Score=22.16 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeCC
Q 013836 30 PMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 30 p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
.-+.+|..|.+.|.+||++...
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHHhCcEEEEEecc
Confidence 4578999999999999999985
No 361
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=26.39 E-value=62 Score=30.53 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=31.3
Q ss_pred hhhcCCccceEeeccCccchHHHHh---hCCCeeeccCCCc
Q 013836 320 QVLAHPAVGCFWTHSGWNSTLESIC---EGIPMICQPYFGD 357 (435)
Q Consensus 320 ~ll~~~~v~~~I~HGG~gs~~eal~---~GvP~v~~P~~~D 357 (435)
+-|..-++.++|.=||-||+.-|.. +|+|+|++|-+-|
T Consensus 86 ~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkTID 126 (317)
T cd00763 86 EQLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGTID 126 (317)
T ss_pred HHHHHcCCCEEEEECCchHHHHHHHHHHcCCCEEEeccccc
Confidence 4566778888999999999987755 5999999997555
No 362
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=26.20 E-value=1.1e+02 Score=26.80 Aligned_cols=33 Identities=18% Similarity=0.143 Sum_probs=23.7
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
|++.+. +.|++- -.||++|...||+|++.+...
T Consensus 2 ~~~~i~---GtGniG--~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 2 MIIAII---GTGNIG--SALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred cEEEEe---ccChHH--HHHHHHHHhCCCeEEEecCCC
Confidence 444443 445543 578999999999999998843
No 363
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=26.09 E-value=1.1e+02 Score=30.19 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=22.5
Q ss_pred CCccEEEEcCchhhHHHHHHHcCCCeEEEc
Q 013836 118 DSFACLITDAAWFIALSVANDFKLPTIVLL 147 (435)
Q Consensus 118 ~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~ 147 (435)
.+||++|... .+..+|+++|||.+.+.
T Consensus 349 ~~pDl~Ig~s---~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 349 YRPDLAIGTT---PLVQYAKEKGIPALYYT 375 (416)
T ss_pred cCCCEEEeCC---hhhHHHHHhCCCEEEec
Confidence 5899999883 46779999999998753
No 364
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=26.03 E-value=1.5e+02 Score=26.65 Aligned_cols=42 Identities=14% Similarity=-0.073 Sum_probs=32.6
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 013836 12 RNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (435)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 53 (435)
|.+.+++.-.-|+-|--.....||..|+++|++|.++-+++.
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~ 42 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPV 42 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 444444555566778899999999999999999999988643
No 365
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=26.01 E-value=1.3e+02 Score=29.29 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
+.++|+++ |+.|-+ -..++++|.++||+|+.++-
T Consensus 59 ~~~kVLVt--GatG~I--G~~l~~~Ll~~G~~V~~l~R 92 (390)
T PLN02657 59 KDVTVLVV--GATGYI--GKFVVRELVRRGYNVVAVAR 92 (390)
T ss_pred CCCEEEEE--CCCcHH--HHHHHHHHHHCCCEEEEEEe
Confidence 45676654 566654 45788999999999998875
No 366
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=25.95 E-value=71 Score=31.94 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=24.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
|||+|+=-|.-| ++=|.+|+++||+||++-..
T Consensus 1 ~rVai~GaG~Ag-----L~~a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 1 MRVAIAGAGLAG-----LAAAYELADAGYDVTLYEAR 32 (485)
T ss_pred CeEEEEcccHHH-----HHHHHHHHhCCCceEEEecc
Confidence 466665544333 67789999999999999884
No 367
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=25.93 E-value=79 Score=30.00 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=25.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
|||.|+-.|..| ..+|..|.++||+|+++..
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r 33 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGR 33 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEec
Confidence 789988777666 4578899999999999986
No 368
>PRK05636 replicative DNA helicase; Provisional
Probab=25.79 E-value=1.8e+02 Score=29.52 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=27.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeCC
Q 013836 17 VILFPLPFQGHINPMLQLGSILY-SEGFSITIIHTT 51 (435)
Q Consensus 17 il~~~~~~~GHv~p~l~La~~L~-~rGH~Vt~~~~~ 51 (435)
|++.-.|+.|--.-.+.+|...+ +.|..|.+++..
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlE 303 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLE 303 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEee
Confidence 45667778899999999998876 458899888774
No 369
>PHA02857 monoglyceride lipase; Provisional
Probab=25.67 E-value=1.3e+02 Score=27.11 Aligned_cols=38 Identities=11% Similarity=0.063 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
++.-++++..|..+|..-+..+++.|.++|+.|..+-.
T Consensus 23 ~~~~~v~llHG~~~~~~~~~~~~~~l~~~g~~via~D~ 60 (276)
T PHA02857 23 YPKALVFISHGAGEHSGRYEELAENISSLGILVFSHDH 60 (276)
T ss_pred CCCEEEEEeCCCccccchHHHHHHHHHhCCCEEEEccC
Confidence 34468888888889999999999999999999887755
No 370
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=25.67 E-value=6.9e+02 Score=26.81 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=30.1
Q ss_pred CEEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 013836 15 RRVILFPL--PFQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (435)
Q Consensus 15 ~~il~~~~--~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 53 (435)
.|++.++. |+.|--.-...||..|+..|++|.++-.+..
T Consensus 546 ~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 546 PEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred ceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 34444443 3449999999999999999999999977643
No 371
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=25.60 E-value=66 Score=30.46 Aligned_cols=38 Identities=16% Similarity=0.138 Sum_probs=31.5
Q ss_pred hhhcCCccceEeeccCccchHHHHh---hCCCeeeccCCCc
Q 013836 320 QVLAHPAVGCFWTHSGWNSTLESIC---EGIPMICQPYFGD 357 (435)
Q Consensus 320 ~ll~~~~v~~~I~HGG~gs~~eal~---~GvP~v~~P~~~D 357 (435)
+-|..-++.++|.=||-+|+..|.. .|+|+|++|-+-|
T Consensus 88 ~~l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkTID 128 (324)
T TIGR02483 88 ANLKELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKTID 128 (324)
T ss_pred HHHHHcCCCEEEEECCchHHHHHHHHHhcCCCEEeeccccC
Confidence 4566778888999999999987755 5999999997655
No 372
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=25.43 E-value=1.2e+02 Score=23.79 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=30.2
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
...+++++++|+. +...+..+++|.++|.+++++..
T Consensus 8 ~g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 8 EGADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp SSSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEee
Confidence 4567889988877 46679999999999999999877
No 373
>PRK03094 hypothetical protein; Provisional
Probab=25.38 E-value=65 Score=23.35 Aligned_cols=20 Identities=10% Similarity=0.399 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 013836 31 MLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 31 ~l~La~~L~~rGH~Vt~~~~ 50 (435)
+-.+.+.|.++||+|.=+.+
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred cHHHHHHHHHCCCEEEecCc
Confidence 44688999999999987765
No 374
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.38 E-value=61 Score=30.09 Aligned_cols=57 Identities=7% Similarity=-0.011 Sum_probs=37.1
Q ss_pred hhhcCCccceEeeccCccchHHHHhh----CCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHHHHHHHHHHHHcC
Q 013836 320 QVLAHPAVGCFWTHSGWNSTLESICE----GIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERKEIERAILRVMVK 394 (435)
Q Consensus 320 ~ll~~~~v~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~vl~~ 394 (435)
++...+++ +|+-||-||+..+++. ++|++.+-... +|. +. .++.+++.+++++++++
T Consensus 60 ~~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~G~------------lGF---Lt-~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 60 ELFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHAGH------------LGF---LT-DITVDEAEKFFQAFFQG 120 (287)
T ss_pred hcccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeCCC------------ccc---CC-cCCHHHHHHHHHHHHcC
Confidence 34445677 9999999999988763 67877664311 111 11 35667777777777664
No 375
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=25.36 E-value=1.5e+02 Score=24.05 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=27.4
Q ss_pred EEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 19 LFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 19 ~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
++.++..--+.|..-++...+..|++|+++.|
T Consensus 8 Il~SG~~dk~~~a~iias~A~A~G~EV~VF~T 39 (137)
T COG2210 8 ILASGTLDKAYAALIIASGAAAMGYEVTVFFT 39 (137)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 33446668899999999999999999999999
No 376
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=25.27 E-value=1.1e+02 Score=26.53 Aligned_cols=46 Identities=28% Similarity=0.457 Sum_probs=35.4
Q ss_pred CccCCCCCCCCCCCEEEEEcCCCc-cChHH--HHHHHHHHHhCCCeEEE
Q 013836 2 ETQQDPCKLPRNGRRVILFPLPFQ-GHINP--MLQLGSILYSEGFSITI 47 (435)
Q Consensus 2 ~~~~~~~~~~~~~~~il~~~~~~~-GHv~p--~l~La~~L~~rGH~Vt~ 47 (435)
|+.-.|++.+.+..-|++-|.|.. ||.+- ...+++.|.++|..+.-
T Consensus 17 e~~~~~~~~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlR 65 (210)
T COG2945 17 EGRYEPAKTPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLR 65 (210)
T ss_pred eeccCCCCCCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEe
Confidence 455567777777888888888887 77764 77899999999976543
No 377
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=25.14 E-value=2.4e+02 Score=26.14 Aligned_cols=116 Identities=9% Similarity=0.105 Sum_probs=71.9
Q ss_pred chhhhhhhcCCCCcEEEEEeccccCccccCCCchhhHhhhcCCceEEeecchhhhhcCCccceEeeccCccchHHHHhhC
Q 013836 267 QSSISWLDKQAPRSVIYVSFGLARGAEWLEPLPKGILEMVDGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEG 346 (435)
Q Consensus 267 ~~l~~~l~~~~~~~vV~vs~G~v~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~G 346 (435)
.++.+||.+...+=+|.+ |.++- ++..+.+..+.+++=. ||++ .=-+.|.+.+..|+.+|
T Consensus 155 ~~~~~~l~~~~~Dlivla--gy~~i------l~~~~l~~~~~~iiNi----------HpSL--LP~~rG~~~~~~ai~~G 214 (286)
T PRK13011 155 AQVLDVVEESGAELVVLA--RYMQV------LSPELCRKLAGRAINI----------HHSF--LPGFKGAKPYHQAYERG 214 (286)
T ss_pred HHHHHHHHHhCcCEEEEe--Chhhh------CCHHHHhhccCCeEEe----------cccc--CCCCCCCcHHHHHHHCC
Confidence 346778887555434444 44333 5566665544443322 4444 55567899999999999
Q ss_pred CCeeeccCC--CchhHHHHHHHhhhccEEEeCCcCCHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 013836 347 IPMICQPYF--GDQMVNSRYVSHAWRVGLQLEGKLERKEIERAILRVMVKADSQEMRERATYLNE 409 (435)
Q Consensus 347 vP~v~~P~~--~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~ 409 (435)
+...++-++ .+..|-+..+.+ ..+.+...-|.++|.+.+.++-. .-|-+..+.+.+
T Consensus 215 ~~~tG~TvH~v~~~~D~G~Ii~Q---~~v~I~~~dt~~~L~~r~~~~E~----~~~~~ai~~~~~ 272 (286)
T PRK13011 215 VKLIGATAHYVTDDLDEGPIIEQ---DVERVDHAYSPEDLVAKGRDVEC----LTLARAVKAHIE 272 (286)
T ss_pred CCeEEEEEEEEcCCCcCCCcEEE---EEEEcCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHh
Confidence 999888753 233344444433 23444446799999999987533 477777766654
No 378
>PLN02924 thymidylate kinase
Probab=25.09 E-value=1.8e+02 Score=25.81 Aligned_cols=47 Identities=23% Similarity=0.227 Sum_probs=37.3
Q ss_pred CCccCCCCCCCCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 1 METQQDPCKLPRNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 1 ~~~~~~~~~~~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
|||..+|. ++.+-|+|-=..+.|--.=.-.|++.|..+|+.|.+..-
T Consensus 6 ~~~~~~~~---~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~e 52 (220)
T PLN02924 6 METESSVE---SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRF 52 (220)
T ss_pred cCCCCCcC---CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeC
Confidence 67766665 445778888888889999999999999999999865443
No 379
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=25.08 E-value=1.8e+02 Score=25.28 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=72.0
Q ss_pred hhhhhhcCCCCcEEEEEeccccCccccCCCchhhHhhhcCCceEEeecchhhhhcCCccceEeeccCccchHHHHhhCCC
Q 013836 269 SISWLDKQAPRSVIYVSFGLARGAEWLEPLPKGILEMVDGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEGIP 348 (435)
Q Consensus 269 l~~~l~~~~~~~vV~vs~G~v~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~GvP 348 (435)
+.+.|+...+ =+.|--|.|+- |...|..+..++++=. ||++ .=.++|..+..+|+.+|+.
T Consensus 71 l~~~l~~~~~--dlvvLAGyMrI------L~~~fl~~~~grIlNI----------HPSL--LP~f~G~h~~~~A~~aG~k 130 (200)
T COG0299 71 LVEALDEYGP--DLVVLAGYMRI------LGPEFLSRFEGRILNI----------HPSL--LPAFPGLHAHEQALEAGVK 130 (200)
T ss_pred HHHHHHhcCC--CEEEEcchHHH------cCHHHHHHhhcceEec----------Cccc--ccCCCCchHHHHHHHcCCC
Confidence 5666766443 34455566555 6667776666655422 7888 8889999999999999999
Q ss_pred eeeccC-CCc-hhHHHHHHHhhhccEEEeCCcCCHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 013836 349 MICQPY-FGD-QMVNSRYVSHAWRVGLQLEGKLERKEIERAILRVMVKADSQEMRERATYLNE 409 (435)
Q Consensus 349 ~v~~P~-~~D-Q~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~ 409 (435)
.-++-. +.| .-+-+-.+.+ ..+.+...-|.|+|.+.|...-. .-|-+..+.+.+
T Consensus 131 ~sG~TVH~V~e~vD~GpII~Q---~~Vpv~~~Dt~etl~~RV~~~Eh----~lyp~~v~~~~~ 186 (200)
T COG0299 131 VSGCTVHFVTEGVDTGPIIAQ---AAVPVLPGDTAETLEARVLEQEH----RLYPLAVKLLAE 186 (200)
T ss_pred ccCcEEEEEccCCCCCCeEEE---EeeeecCCCCHHHHHHHHHHHHH----HHHHHHHHHHHh
Confidence 877664 223 2333333332 23333334689999999977533 366666665554
No 380
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=25.07 E-value=79 Score=27.88 Aligned_cols=31 Identities=23% Similarity=0.134 Sum_probs=22.2
Q ss_pred CEEEEEc-CCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 15 RRVILFP-LPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 15 ~~il~~~-~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
|||.|+= .|..| ..|++.|.++||+|++...
T Consensus 1 MkI~IIGG~G~mG-----~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQG-----KGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEEcCCCHHH-----HHHHHHHHhCCCEEEEEEc
Confidence 5677762 33333 4788999999999998754
No 381
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=24.98 E-value=3.2e+02 Score=27.44 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchh-----------hHHHHHHHcCCCeEEEc
Q 013836 85 DIPALLLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWF-----------IALSVANDFKLPTIVLL 147 (435)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~-----------~~~~~A~~~giP~v~~~ 147 (435)
+...+++.+.......+++.++.+. +.+|+|+.+.+.. ..+.+|++.+.|.|.+.
T Consensus 99 s~~~yy~~~~~~l~~~v~~s~~~l~--------~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~dapvILV~ 164 (486)
T COG1492 99 SAVEYYQEGKGLLWVAVKESLERLD--------REYDVVVIEGAGSPAEINLRDRDIANMGVAEIADAPVILVG 164 (486)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhh--------hcccEEEEecCCChhhcCcccccccceeeehhcCCCEEEEE
Confidence 3345566666777777777777665 4799999887543 34568889999988763
No 382
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=24.96 E-value=71 Score=28.45 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=18.4
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 27 HINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 27 Hv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
|..-|...|++|.++|++|+++..
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~ 70 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIEL 70 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-T
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeC
Confidence 456688999999999999999988
No 383
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=24.92 E-value=51 Score=24.93 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=18.0
Q ss_pred hhhhhhcCCCCcEEEEEeccc
Q 013836 269 SISWLDKQAPRSVIYVSFGLA 289 (435)
Q Consensus 269 l~~~l~~~~~~~vV~vs~G~v 289 (435)
+..|+...+.++-|+||+|..
T Consensus 30 ~P~Wl~~~~~RpRVcvT~G~~ 50 (97)
T PF06722_consen 30 VPDWLLEPPGRPRVCVTLGTS 50 (97)
T ss_dssp EEGGGSSSTSSEEEEEEETHH
T ss_pred CCcccccCCCCCEEEEEcCCC
Confidence 667999888999999999943
No 384
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=24.87 E-value=1.2e+02 Score=29.95 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=22.9
Q ss_pred CCccceEeeccCcc------chHHHHhhCCCeeecc
Q 013836 324 HPAVGCFWTHSGWN------STLESICEGIPMICQP 353 (435)
Q Consensus 324 ~~~v~~~I~HGG~g------s~~eal~~GvP~v~~P 353 (435)
.+.+ +++|.|-| .+++|.+.++|+|++-
T Consensus 63 ~~gv--~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 96 (432)
T TIGR00173 63 RPVA--VVCTSGTAVANLLPAVIEASYSGVPLIVLT 96 (432)
T ss_pred CCEE--EEECCcchHhhhhHHHHHhcccCCcEEEEe
Confidence 3455 88888877 6789999999999993
No 385
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=24.74 E-value=2.5e+02 Score=26.16 Aligned_cols=117 Identities=9% Similarity=0.127 Sum_probs=72.0
Q ss_pred cchhhhhhhcCCCCcEEEEEeccccCccccCCCchhhHhhhcCCceEEeecchhhhhcCCccceEeeccCccchHHHHhh
Q 013836 266 DQSSISWLDKQAPRSVIYVSFGLARGAEWLEPLPKGILEMVDGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICE 345 (435)
Q Consensus 266 ~~~l~~~l~~~~~~~vV~vs~G~v~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~ 345 (435)
+.++.++|.+...+ +.|..|.++- +++.+.+..+.+++=. ||++ .=-..|.+....|+.+
T Consensus 158 ~~~~~~~l~~~~~D--livlagym~i------l~~~~l~~~~~~iiNi----------HpSl--LP~f~G~~~~~~ai~~ 217 (289)
T PRK13010 158 EAQILDLIETSGAE--LVVLARYMQV------LSDDLSRKLSGRAINI----------HHSF--LPGFKGARPYHQAHAR 217 (289)
T ss_pred HHHHHHHHHHhCCC--EEEEehhhhh------CCHHHHhhccCCceee----------Cccc--CCCCCCCCHHHHHHHc
Confidence 34477888875554 4444444433 5566665544444322 3443 3444689999999999
Q ss_pred CCCeeeccCC--CchhHHHHHHHhhhccEEEeCCcCCHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 013836 346 GIPMICQPYF--GDQMVNSRYVSHAWRVGLQLEGKLERKEIERAILRVMVKADSQEMRERATYLNE 409 (435)
Q Consensus 346 GvP~v~~P~~--~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~ 409 (435)
|+...++-.+ .+..+.+..+.+ .-+.+...-|.++|.+.+..+-. .-|-+..+.+.+
T Consensus 218 G~k~tG~TvH~v~~~lD~GpII~Q---~~v~V~~~dt~e~L~~r~~~~E~----~~l~~ai~~~~~ 276 (289)
T PRK13010 218 GVKLIGATAHFVTDDLDEGPIIEQ---DVERVDHSYSPEDLVAKGRDVEC----LTLARAVKAFIE 276 (289)
T ss_pred CCCeEEEEEEEEcCCCCCCCceEE---EEEEcCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHh
Confidence 9999888853 344455555544 23334445788999999987654 367666666543
No 386
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=24.66 E-value=1e+02 Score=28.55 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=26.5
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
+||.|+=.|..| .+.|+.|.++||+|++..-..
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~~ 33 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRTP 33 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCCh
Confidence 467777776666 578999999999999998843
No 387
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=24.65 E-value=84 Score=28.08 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 28 INPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 28 v~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
+-+.+.+.+.|.++||.|.++|...
T Consensus 122 ip~al~l~~~l~~~G~~Vf~lTGR~ 146 (229)
T TIGR01675 122 LPEGLKLYQKIIELGIKIFLLSGRW 146 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4568899999999999999999953
No 388
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=24.59 E-value=91 Score=31.29 Aligned_cols=33 Identities=6% Similarity=0.050 Sum_probs=22.7
Q ss_pred CCccEEEEcCch--hhHHHHHHHcCCCeEEEcccc
Q 013836 118 DSFACLITDAAW--FIALSVANDFKLPTIVLLTDS 150 (435)
Q Consensus 118 ~~~Dlvi~D~~~--~~~~~~A~~~giP~v~~~~~~ 150 (435)
.+||+|+..+.. ..+..+++++|||...+..+-
T Consensus 400 ~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHsL 434 (550)
T PF00862_consen 400 GKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHSL 434 (550)
T ss_dssp S--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS-
T ss_pred CCCcEEEeccCcchHHHHHHHhhcCCceehhhhcc
Confidence 579999988643 667889999999988876653
No 389
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=24.45 E-value=73 Score=26.38 Aligned_cols=38 Identities=29% Similarity=0.481 Sum_probs=30.6
Q ss_pred CCEEEEEcCC-------CccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 14 GRRVILFPLP-------FQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 14 ~~~il~~~~~-------~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
..|++++-.| +..|+.-++.-+++|..+|.+++++.+-
T Consensus 43 GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSV 87 (171)
T KOG0541|consen 43 GKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSV 87 (171)
T ss_pred CceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEec
Confidence 4566655433 6789999999999999999998888873
No 390
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=24.39 E-value=1e+02 Score=28.55 Aligned_cols=116 Identities=13% Similarity=0.162 Sum_probs=70.3
Q ss_pred chhhhhhhcCCCCcEEEEEeccccCccccCCCchhhHhhhcCCceEEeecchhhhhcCCccceEeeccCccchHHHHhhC
Q 013836 267 QSSISWLDKQAPRSVIYVSFGLARGAEWLEPLPKGILEMVDGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICEG 346 (435)
Q Consensus 267 ~~l~~~l~~~~~~~vV~vs~G~v~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~G 346 (435)
.++.+++.+...+=+|.++|+ +- ++..+.+..+.+++=. ||++ .=...|.+....++.+|
T Consensus 155 ~~~~~~l~~~~~Dlivlagy~--~i------l~~~~l~~~~~~iiNi----------HpSL--LP~yrG~~~~~~ai~~G 214 (286)
T PRK06027 155 ARLLELIDEYQPDLVVLARYM--QI------LSPDFVARFPGRIINI----------HHSF--LPAFKGAKPYHQAYERG 214 (286)
T ss_pred HHHHHHHHHhCCCEEEEecch--hh------cCHHHHhhccCCceec----------Cccc--CCCCCCCCHHHHHHHCC
Confidence 346788887555544444433 33 5556654444433311 3333 33346889999999999
Q ss_pred CCeeeccCC--CchhHHHHHHHhhhccEEEeCCcCCHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 013836 347 IPMICQPYF--GDQMVNSRYVSHAWRVGLQLEGKLERKEIERAILRVMVKADSQEMRERATYLNE 409 (435)
Q Consensus 347 vP~v~~P~~--~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~ 409 (435)
+...++-++ .+..|.+..+.+ ..+.+...-|.++|.+.+..+-. .-|-+..+.+.+
T Consensus 215 ~~~tG~TiH~v~~~~D~G~Ii~Q---~~v~i~~~dt~~~L~~ri~~~E~----~~~~~ai~~~~~ 272 (286)
T PRK06027 215 VKLIGATAHYVTADLDEGPIIEQ---DVIRVDHRDTAEDLVRAGRDVEK----QVLARAVRWHLE 272 (286)
T ss_pred CCeEEEEEEEEcCCCcCCCcEEE---EEEEcCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHh
Confidence 999887752 344455555544 23444445789999999876544 367666666553
No 391
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=24.39 E-value=1.3e+02 Score=29.40 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=32.7
Q ss_pred hhhcCCccceEeeccCccchHHHH--------hhCCCeeeccCCCc--hhHHHHHHHhhhccEEE
Q 013836 320 QVLAHPAVGCFWTHSGWNSTLESI--------CEGIPMICQPYFGD--QMVNSRYVSHAWRVGLQ 374 (435)
Q Consensus 320 ~ll~~~~v~~~I~HGG~gs~~eal--------~~GvP~v~~P~~~D--Q~~na~~v~~~~G~g~~ 374 (435)
+-|....|.++|==...|||+.|. ++|+|+|.+--... .-.-|.|+.. ++++-
T Consensus 330 ~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiPvv~~~~~~pis~tvGanrivp--~~~ip 392 (431)
T TIGR01918 330 VELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHMCTVIPIALTVGANRIVP--TIAIP 392 (431)
T ss_pred HHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeecccHhhhcCccceec--ccCcC
Confidence 344556666677777777777663 58999987654222 2222567776 45544
No 392
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=24.38 E-value=1.3e+02 Score=29.42 Aligned_cols=37 Identities=16% Similarity=0.080 Sum_probs=24.9
Q ss_pred hhcCCccceEeeccCccchHHHH--------hhCCCeeeccCCCc
Q 013836 321 VLAHPAVGCFWTHSGWNSTLESI--------CEGIPMICQPYFGD 357 (435)
Q Consensus 321 ll~~~~v~~~I~HGG~gs~~eal--------~~GvP~v~~P~~~D 357 (435)
-|....|.++|==...|||+.|. ++|+|+|.+--..+
T Consensus 331 ~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~~~p 375 (431)
T TIGR01917 331 ELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICTVTP 375 (431)
T ss_pred HHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeechh
Confidence 44456666677777777777663 58999988765443
No 393
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=24.36 E-value=82 Score=32.50 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=21.0
Q ss_pred EeeccCcc------chHHHHhhCCCeeecc
Q 013836 330 FWTHSGWN------STLESICEGIPMICQP 353 (435)
Q Consensus 330 ~I~HGG~g------s~~eal~~GvP~v~~P 353 (435)
++.|.|-| .+++|.+.++|||++.
T Consensus 72 ~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 72 CTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred EEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 88888876 6799999999999996
No 394
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=24.23 E-value=93 Score=23.76 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeC
Q 013836 29 NPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 29 ~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
.|.+.|+++|.++|.+|.+.=|
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP 38 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDP 38 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-T
T ss_pred CHHHHHHHHHHHCCCEEEEECC
Confidence 6899999999999999888776
No 395
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=24.02 E-value=1.3e+02 Score=29.67 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=21.6
Q ss_pred CCccEEEEcCchhhHHHHHHHcCCCeEEE
Q 013836 118 DSFACLITDAAWFIALSVANDFKLPTIVL 146 (435)
Q Consensus 118 ~~~Dlvi~D~~~~~~~~~A~~~giP~v~~ 146 (435)
.+||++|.+.. ...+|+++|+|++.+
T Consensus 370 ~~pdliig~~~---~~~~a~~~~ip~i~~ 395 (428)
T cd01965 370 EPVDLLIGNSH---GRYLARDLGIPLVRV 395 (428)
T ss_pred cCCCEEEECch---hHHHHHhcCCCEEEe
Confidence 57999999963 468899999999864
No 396
>PRK14071 6-phosphofructokinase; Provisional
Probab=24.00 E-value=68 Score=30.91 Aligned_cols=38 Identities=16% Similarity=0.011 Sum_probs=30.8
Q ss_pred hhhcCCccceEeeccCccchHHHHh----hCCCeeeccCCCc
Q 013836 320 QVLAHPAVGCFWTHSGWNSTLESIC----EGIPMICQPYFGD 357 (435)
Q Consensus 320 ~ll~~~~v~~~I~HGG~gs~~eal~----~GvP~v~~P~~~D 357 (435)
+.|..-++.++|.=||.||+.-+.. +|+|+|++|-+-|
T Consensus 101 ~~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTID 142 (360)
T PRK14071 101 DGYHSLGLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTID 142 (360)
T ss_pred HHHHHcCCCEEEEECChhHHHHHHHHHHhcCCcEEEeccccc
Confidence 5566778888999999999866643 4999999997655
No 397
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=23.99 E-value=1.3e+02 Score=26.78 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=28.7
Q ss_pred CEEEEEcC-CCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 15 RRVILFPL-PFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 15 ~~il~~~~-~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
|+++.+.. ...|-..-...|+++|.++|++|.++-+
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 45555554 4558888889999999999999999975
No 398
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=23.98 E-value=1.5e+02 Score=25.21 Aligned_cols=37 Identities=22% Similarity=0.440 Sum_probs=28.3
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 14 GRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
+..+++.-.++.|--.=..++++++.++|+.|.|++.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA 83 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec
Confidence 4678888778888888899999999999999988876
No 399
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=23.96 E-value=1.2e+02 Score=25.90 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=21.9
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
|||.++ +-||+ -+.+|-.|+++||+|+.+-..
T Consensus 1 M~I~Vi---GlGyv--Gl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVI---GLGYV--GLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE-----STT--HHHHHHHHHHTTSEEEEE-S-
T ss_pred CEEEEE---CCCcc--hHHHHHHHHhCCCEEEEEeCC
Confidence 667666 44554 377888999999999999885
No 400
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.95 E-value=72 Score=29.36 Aligned_cols=58 Identities=12% Similarity=0.105 Sum_probs=37.5
Q ss_pred hhhhhcCCccceEeeccCccchHHHHhh----CCCeeeccCCCchhHHHHHHHhhhccEEEeCCcCCHHHHHHHHHHHHc
Q 013836 318 QQQVLAHPAVGCFWTHSGWNSTLESICE----GIPMICQPYFGDQMVNSRYVSHAWRVGLQLEGKLERKEIERAILRVMV 393 (435)
Q Consensus 318 ~~~ll~~~~v~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~vl~ 393 (435)
+.++...+++ +|+=||-||+..+.+. ++|++.+-... +|--. .++++++.+.+.++++
T Consensus 36 ~~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G~--------------lGFL~--~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 36 LEEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRGN--------------LGFLT--DIDPKNAYEQLEACLE 97 (272)
T ss_pred hHHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCCC--------------Ccccc--cCCHHHHHHHHHHHHh
Confidence 3455556777 9999999999988653 67887764311 11111 3556666777776666
No 401
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=23.89 E-value=2.5e+02 Score=26.80 Aligned_cols=81 Identities=14% Similarity=0.142 Sum_probs=58.5
Q ss_pred CCceE-Eeecchh---hhhcCCccceEeec--cCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCC-cCC
Q 013836 308 GRGYI-VKWAPQQ---QVLAHPAVGCFWTH--SGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEG-KLE 380 (435)
Q Consensus 308 ~~~~~-~~~~p~~---~ll~~~~v~~~I~H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~-~~~ 380 (435)
+++.+ .+++|.+ ++|..|+++=|+|. =|.|++.-.++.|+|+++-- +=+.|- -+++ .|+-+-... .++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~---~np~~~-~l~~-~~ipVlf~~d~L~ 319 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR---DNPFWQ-DLKE-QGIPVLFYGDELD 319 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEec---CChHHH-HHHh-CCCeEEeccccCC
Confidence 46655 4788855 68889999666654 59999999999999998743 333443 3444 377776654 899
Q ss_pred HHHHHHHHHHHHc
Q 013836 381 RKEIERAILRVMV 393 (435)
Q Consensus 381 ~~~l~~~i~~vl~ 393 (435)
...|+++=+++..
T Consensus 320 ~~~v~ea~rql~~ 332 (360)
T PF07429_consen 320 EALVREAQRQLAN 332 (360)
T ss_pred HHHHHHHHHHHhh
Confidence 9999988877654
No 402
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=23.82 E-value=77 Score=30.81 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=28.6
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
.+.-+++++.|..|+=+-+-.+|.+|+.+|+=|..+-..
T Consensus 98 ~~~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHr 136 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHR 136 (379)
T ss_dssp S-EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---
T ss_pred CCCCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccC
Confidence 678899999999999999999999999999999988884
No 403
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=23.76 E-value=1.1e+02 Score=30.12 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=24.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
|||.|+=.|..| ..+|..|+++||+|+++...
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDID 32 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEECC
Confidence 577777555545 67889999999999998764
No 404
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=23.65 E-value=2.8e+02 Score=25.66 Aligned_cols=117 Identities=9% Similarity=0.075 Sum_probs=71.8
Q ss_pred cchhhhhhhcCCCCcEEEEEeccccCccccCCCchhhHhhhcCCceEEeecchhhhhcCCccceEeeccCccchHHHHhh
Q 013836 266 DQSSISWLDKQAPRSVIYVSFGLARGAEWLEPLPKGILEMVDGRGYIVKWAPQQQVLAHPAVGCFWTHSGWNSTLESICE 345 (435)
Q Consensus 266 ~~~l~~~l~~~~~~~vV~vs~G~v~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~ll~~~~v~~~I~HGG~gs~~eal~~ 345 (435)
+.++.++|.+...+ +.|..|.++- +++.+.+..+.+++=. ||+. .=-..|.+....|+..
T Consensus 149 e~~~~~~l~~~~~D--livlagym~i------l~~~~l~~~~~~iINi----------HpSL--LP~f~G~~p~~~ai~~ 208 (280)
T TIGR00655 149 EKRQLELLKQYQVD--LVVLAKYMQI------LSPDFVKRYPNKIINI----------HHSF--LPAFIGANPYQRAYER 208 (280)
T ss_pred HHHHHHHHHHhCCC--EEEEeCchhh------CCHHHHhhccCCEEEe----------cCCc--CCCCCCcCHHHHHHHc
Confidence 34477888775554 4444454444 6667765555544422 3333 3334688999999999
Q ss_pred CCCeeeccCC--CchhHHHHHHHhhhccEEEeCCcCCHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 013836 346 GIPMICQPYF--GDQMVNSRYVSHAWRVGLQLEGKLERKEIERAILRVMVKADSQEMRERATYLNE 409 (435)
Q Consensus 346 GvP~v~~P~~--~DQ~~na~~v~~~~G~g~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~ 409 (435)
|+...++-.+ .+..|.+..+.+ --+.+....|.++|.+.+.++-. .-|-+..+.+.+
T Consensus 209 G~k~tG~TvH~V~e~lD~GpII~Q---~~v~I~~~dt~~~L~~ri~~~E~----~~~~~ai~~~~~ 267 (280)
T TIGR00655 209 GVKIIGATAHYVTEELDEGPIIEQ---DVVRVDHTDNVEDLIRAGRDIEK----VVLARAVKLHLE 267 (280)
T ss_pred CCCeEEEEEEEEcCCCcCCCeEEE---EEEEcCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHh
Confidence 9999888753 344455555544 23334346889999998877533 366666665543
No 405
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.57 E-value=1.2e+02 Score=27.34 Aligned_cols=38 Identities=11% Similarity=-0.041 Sum_probs=25.0
Q ss_pred HHHHHhccCCcCCCCccEEEEcCchhh--HH-HHHHHcCCCeEEEccc
Q 013836 105 LANKLMSNAQESKDSFACLITDAAWFI--AL-SVANDFKLPTIVLLTD 149 (435)
Q Consensus 105 l~~l~~~~~~~~~~~~Dlvi~D~~~~~--~~-~~A~~~giP~v~~~~~ 149 (435)
++++.. -+||+||....... .. .+.+..|+|++.+...
T Consensus 67 ~E~i~~-------l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 67 YEKIAA-------LKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred HHHHHh-------cCCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 566666 68999998754322 22 2444589999887653
No 406
>PRK08322 acetolactate synthase; Reviewed
Probab=23.45 E-value=1.3e+02 Score=30.83 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.1
Q ss_pred ceEeeccCcc------chHHHHhhCCCeeecc
Q 013836 328 GCFWTHSGWN------STLESICEGIPMICQP 353 (435)
Q Consensus 328 ~~~I~HGG~g------s~~eal~~GvP~v~~P 353 (435)
+++++|.|-| .+++|...++|+|++.
T Consensus 65 gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 65 GVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred EEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 3388888876 7899999999999985
No 407
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=23.42 E-value=1.3e+02 Score=26.69 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=23.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 17 il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
.++++ |+.|.+- ..|++.|.++|++|+.++..
T Consensus 3 ~vlIt-Ga~g~lG--~~l~~~l~~~g~~v~~~~r~ 34 (255)
T TIGR01963 3 TALVT-GAASGIG--LAIALALAAAGANVVVNDLG 34 (255)
T ss_pred EEEEc-CCcchHH--HHHHHHHHHCCCEEEEEeCC
Confidence 34444 5667664 68899999999999988763
No 408
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=23.38 E-value=1.7e+02 Score=22.85 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=29.7
Q ss_pred CEEEEEcCCCccChHHHH---HHHHHHHhCCCeEEEEeCCC
Q 013836 15 RRVILFPLPFQGHINPML---QLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l---~La~~L~~rGH~Vt~~~~~~ 52 (435)
|||++++....|-...++ .|.++-.++||+|.+=+-..
T Consensus 3 mkivaVtacp~GiAht~lAAeaL~kAA~~~G~~i~VE~qg~ 43 (114)
T PRK10427 3 AYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVKIETQGA 43 (114)
T ss_pred ceEEEEeeCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 889988888888777765 56667777899999877753
No 409
>PRK06197 short chain dehydrogenase; Provisional
Probab=23.23 E-value=2.1e+02 Score=26.51 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=23.9
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 14 GRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
+-|.++++. +.|-+ -..+++.|+++|++|+++.-
T Consensus 15 ~~k~vlItG-as~gI--G~~~a~~l~~~G~~vi~~~r 48 (306)
T PRK06197 15 SGRVAVVTG-ANTGL--GYETAAALAAKGAHVVLAVR 48 (306)
T ss_pred CCCEEEEcC-CCCcH--HHHHHHHHHHCCCEEEEEeC
Confidence 345666664 44544 45678999999999988765
No 410
>PRK08309 short chain dehydrogenase; Provisional
Probab=23.19 E-value=1.5e+02 Score=25.26 Aligned_cols=19 Identities=21% Similarity=0.469 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCCeEEEEeC
Q 013836 32 LQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 32 l~La~~L~~rGH~Vt~~~~ 50 (435)
.++++.|.++|++|++++-
T Consensus 13 g~la~~L~~~G~~V~v~~R 31 (177)
T PRK08309 13 KRVSLWLCEKGFHVSVIAR 31 (177)
T ss_pred HHHHHHHHHCcCEEEEEEC
Confidence 4699999999999998865
No 411
>PRK08265 short chain dehydrogenase; Provisional
Probab=23.13 E-value=1.5e+02 Score=26.68 Aligned_cols=32 Identities=13% Similarity=0.101 Sum_probs=23.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
|.++++.++ |. --.+++++|+++|++|+++.-
T Consensus 7 k~vlItGas-~g--IG~~ia~~l~~~G~~V~~~~r 38 (261)
T PRK08265 7 KVAIVTGGA-TL--IGAAVARALVAAGARVAIVDI 38 (261)
T ss_pred CEEEEECCC-Ch--HHHHHHHHHHHCCCEEEEEeC
Confidence 456666443 32 456788999999999988765
No 412
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=23.04 E-value=1.8e+02 Score=28.55 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=27.8
Q ss_pred CCCCCEEEEEcCCC--------------ccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 11 PRNGRRVILFPLPF--------------QGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 11 ~~~~~~il~~~~~~--------------~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
+++.+++++...|+ .|- --.++|++|.++|++|+++..+
T Consensus 185 ~l~gk~vlITgG~T~E~ID~VR~isN~SSG~--~G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 185 DLAGKRVLITAGPTREPIDPVRYITNRSSGK--MGYALARAAARRGADVTLVSGP 237 (399)
T ss_pred ccCCCEEEEeCCCccccccceeeeccCCcch--HHHHHHHHHHHCCCEEEEeCCC
Confidence 45667766655433 333 2467899999999999999874
No 413
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=23.01 E-value=4.8e+02 Score=28.87 Aligned_cols=87 Identities=13% Similarity=0.088 Sum_probs=52.4
Q ss_pred eecchhh---hhcCCccceEee---ccCccc-hHHHHhhCC---CeeeccCCCchhHHHHHHHhhhc-cEEEeCCcCCHH
Q 013836 314 KWAPQQQ---VLAHPAVGCFWT---HSGWNS-TLESICEGI---PMICQPYFGDQMVNSRYVSHAWR-VGLQLEGKLERK 382 (435)
Q Consensus 314 ~~~p~~~---ll~~~~v~~~I~---HGG~gs-~~eal~~Gv---P~v~~P~~~DQ~~na~~v~~~~G-~g~~~~~~~~~~ 382 (435)
..+|+.+ ++..++| ++. .-|+|- ..|.++++. -+++++-+.-. |. . +| -|+.+.+ .+.+
T Consensus 446 ~~l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaGa---a~---~-L~~~AllVNP-~D~~ 515 (934)
T PLN03064 446 RSLDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAGA---AQ---S-LGAGAILVNP-WNIT 515 (934)
T ss_pred cCCCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCCCch---HH---H-hCCceEEECC-CCHH
Confidence 4466664 4456777 554 348775 459999955 23333433221 11 2 43 4677777 9999
Q ss_pred HHHHHHHHHHc-CCchHHHHHHHHHHHHHHH
Q 013836 383 EIERAILRVMV-KADSQEMRERATYLNEKVD 412 (435)
Q Consensus 383 ~l~~~i~~vl~-~~~~~~~~~~a~~l~~~~~ 412 (435)
+++++|.++|+ +. ++-+++.+++.+.+.
T Consensus 516 ~vA~AI~~AL~M~~--~Er~~r~~~~~~~V~ 544 (934)
T PLN03064 516 EVAASIAQALNMPE--EEREKRHRHNFMHVT 544 (934)
T ss_pred HHHHHHHHHHhCCH--HHHHHHHHHHHhhcc
Confidence 99999999987 42 444555555555444
No 414
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=23.00 E-value=83 Score=32.53 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=23.9
Q ss_pred CCccceEeeccCccc------hHHHHhhCCCeeecc
Q 013836 324 HPAVGCFWTHSGWNS------TLESICEGIPMICQP 353 (435)
Q Consensus 324 ~~~v~~~I~HGG~gs------~~eal~~GvP~v~~P 353 (435)
.+.| +++|.|-|. ++||.+.++|+|++.
T Consensus 74 ~~gv--~~~t~GpG~~N~~~gl~~A~~~~~Pvl~I~ 107 (578)
T PRK06112 74 KVAV--VTAQNGPAATLLVAPLAEALKASVPIVALV 107 (578)
T ss_pred CCEE--EEeCCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 3555 888899887 999999999999985
No 415
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=22.77 E-value=94 Score=25.86 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=23.6
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
|+|.|+=.|..| ..+|+.|.++||+|++...
T Consensus 2 ~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 2 MKIGFIGLGNMG-----SAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEES
T ss_pred CEEEEEchHHHH-----HHHHHHHHhcCCeEEeecc
Confidence 677877776555 5789999999999998764
No 416
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.64 E-value=1.6e+02 Score=25.85 Aligned_cols=35 Identities=11% Similarity=0.055 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 12 RNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
|+.++|++ .|+.|++ -..|++.|.++||+|++++.
T Consensus 4 ~~~~~vlI--tGasg~i--G~~l~~~l~~~g~~v~~~~~ 38 (249)
T PRK12825 4 LMGRVALV--TGAARGL--GRAIALRLARAGADVVVHYR 38 (249)
T ss_pred CCCCEEEE--eCCCchH--HHHHHHHHHHCCCeEEEEeC
Confidence 33345554 3566664 46788999999999977665
No 417
>PLN02891 IMP cyclohydrolase
Probab=22.53 E-value=1.2e+02 Score=30.58 Aligned_cols=90 Identities=8% Similarity=0.044 Sum_probs=49.2
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEccC-CCCCCCCCCCCCCCCHHHHHHHHH-HhcchHHHHH
Q 013836 27 HINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSD-DGFSETYQPSKVADDIPALLLSLN-AKCIVPFRDC 104 (435)
Q Consensus 27 Hv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 104 (435)
+=.=...+|+.|.+.|.++.--+.. .+.-...|+.+..+.+ .++|+.+.-...+.++. ...-+. +.-. .+-
T Consensus 31 DKtgi~~fAk~L~~~gveIiSTgGT---ak~L~e~Gi~v~~Vsd~TgfPEiL~GRVKTLHPk-IhgGILa~r~~---~~h 103 (547)
T PLN02891 31 DKTDLALLANGLQELGYTIVSTGGT---ASALEAAGVSVTKVEELTNFPEMLDGRVKTLHPA-VHGGILARRDQ---EHH 103 (547)
T ss_pred cccCHHHHHHHHHHCCCEEEEcchH---HHHHHHcCCceeeHHhccCCchhhCCcccccCch-hhhhhhcCCCC---HHH
Confidence 3344788999999998887544332 2222336888888886 66776522223333332 332222 1111 122
Q ss_pred HHHHHhccCCcCCCCccEEEEcC
Q 013836 105 LANKLMSNAQESKDSFACLITDA 127 (435)
Q Consensus 105 l~~l~~~~~~~~~~~~Dlvi~D~ 127 (435)
++++.+.+- ...|+|+++.
T Consensus 104 ~~~l~~~~I----~~IDlVvVNL 122 (547)
T PLN02891 104 MEALNEHGI----GTIDVVVVNL 122 (547)
T ss_pred HHHHHHcCC----CceeeEEEec
Confidence 334443322 5789999984
No 418
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=22.52 E-value=77 Score=23.02 Aligned_cols=21 Identities=10% Similarity=0.317 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 013836 31 MLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 31 ~l~La~~L~~rGH~Vt~~~~~ 51 (435)
+-.+.+.|.++||+|+-+...
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENE 30 (80)
T ss_pred chHHHHHHHHCCCEEEecCCc
Confidence 457889999999999988874
No 419
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.50 E-value=68 Score=30.08 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=24.2
Q ss_pred CCccceEeeccCccchHHHHhh----CCCeeeccC
Q 013836 324 HPAVGCFWTHSGWNSTLESICE----GIPMICQPY 354 (435)
Q Consensus 324 ~~~v~~~I~HGG~gs~~eal~~----GvP~v~~P~ 354 (435)
.+++ +|.-||-||+.++++. ++|++++..
T Consensus 57 ~~d~--vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 57 LIDL--AIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred CcCE--EEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 4566 9999999999999874 788888775
No 420
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=22.46 E-value=7e+02 Score=24.00 Aligned_cols=100 Identities=21% Similarity=0.214 Sum_probs=57.3
Q ss_pred hcCCceEEeecchhh---hhcCCccceEeeccCcc-----chHHHHhhCCCeeeccCCCchhHHHHHHHhhhccEEEeCC
Q 013836 306 VDGRGYIVKWAPQQQ---VLAHPAVGCFWTHSGWN-----STLESICEGIPMICQPYFGDQMVNSRYVSHAWRVGLQLEG 377 (435)
Q Consensus 306 ~~~~~~~~~~~p~~~---ll~~~~v~~~I~HGG~g-----s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~ 377 (435)
+++++.+..-+|..+ +|..+.+ =| |+=|| ++.|++++|.=+|+--..+--.+ .|.. =.|-....
T Consensus 335 i~~~v~F~~N~Py~~lv~lL~~a~i--Gv-h~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lD---IV~~--~~G~~tGF 406 (465)
T KOG1387|consen 335 IPKHVQFEKNVPYEKLVELLGKATI--GV-HTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLD---IVTP--WDGETTGF 406 (465)
T ss_pred CccceEEEecCCHHHHHHHhcccee--eh-hhhhhhhcchhHHHHHhcCceEEEeCCCCCcee---eeec--cCCcccee
Confidence 457788877777764 5555554 22 44443 78999999964443222111111 1111 01111112
Q ss_pred -cCCHHHHHHHHHHHHc-CCc-hHHHHHHHHHHHHHHHH
Q 013836 378 -KLERKEIERAILRVMV-KAD-SQEMRERATYLNEKVDI 413 (435)
Q Consensus 378 -~~~~~~l~~~i~~vl~-~~~-~~~~~~~a~~l~~~~~~ 413 (435)
..|.++-++++-+++. |++ ...+|++|++-.++|..
T Consensus 407 la~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE 445 (465)
T KOG1387|consen 407 LAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGE 445 (465)
T ss_pred ecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhH
Confidence 4677777888888774 322 45788889888888874
No 421
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=22.45 E-value=5.5e+02 Score=24.34 Aligned_cols=56 Identities=11% Similarity=0.171 Sum_probs=37.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEEccCCCC
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEFCSFSDDGF 73 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (435)
.++++ +.-.|.-.-.+..++.+.++|..|..+|.........+..+..++.+| .+.
T Consensus 80 dlvI~-iS~SG~T~e~~~a~~~a~~~ga~vIaIT~~~~L~~~a~~~~~~~i~ip-~~~ 135 (337)
T PRK08674 80 TLVIA-VSYSGNTEETLSAVEQALKRGAKIIAITSGGKLKEMAKEHGLPVIIVP-GGY 135 (337)
T ss_pred cEEEE-EcCCCCCHHHHHHHHHHHHCCCeEEEECCCchHHHHHHhcCCeEEEeC-CCC
Confidence 34444 335688888899999999999999988874322222233466777777 444
No 422
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=22.22 E-value=2.1e+02 Score=25.54 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 14 GRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
.|+|+++ |+.|.+ -..|+++|.++||+|+.++-
T Consensus 17 ~~~ilIt--GasG~i--G~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 17 TKTVFVA--GATGRT--GKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred CCeEEEE--CCCcHH--HHHHHHHHHhCCCEEEEEec
Confidence 3555554 444433 35788899999999987764
No 423
>PRK10566 esterase; Provisional
Probab=22.14 E-value=1.9e+02 Score=25.65 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=27.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
-.+++..|..|+-..+..+++.|.++|+.|...-.
T Consensus 28 p~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~d~ 62 (249)
T PRK10566 28 PTVFFYHGFTSSKLVYSYFAVALAQAGFRVIMPDA 62 (249)
T ss_pred CEEEEeCCCCcccchHHHHHHHHHhCCCEEEEecC
Confidence 36666667777766778899999999999987665
No 424
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=22.03 E-value=2e+02 Score=17.75 Aligned_cols=29 Identities=28% Similarity=0.467 Sum_probs=22.2
Q ss_pred cCCHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 013836 378 KLERKEIERAILRVMVKADSQEMRERATYL 407 (435)
Q Consensus 378 ~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l 407 (435)
-++...+.++|.+-|.|.+ +.+|++|-.+
T Consensus 13 ll~~~~v~~~i~~rl~D~s-~~VR~aav~l 41 (42)
T PF12765_consen 13 LLDSSDVQSAIIRRLSDSS-PSVREAAVDL 41 (42)
T ss_pred ccchHHHHHHHHHHhcCCC-hHHHHHHHHH
Confidence 4677789999999888755 7888877543
No 425
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=22.02 E-value=2e+02 Score=24.89 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=31.5
Q ss_pred CCCEEEEEcC--CCccChHHHHHHHHHHHh-CCCeEEEEeCCCC
Q 013836 13 NGRRVILFPL--PFQGHINPMLQLGSILYS-EGFSITIIHTTLN 53 (435)
Q Consensus 13 ~~~~il~~~~--~~~GHv~p~l~La~~L~~-rGH~Vt~~~~~~~ 53 (435)
.++|++.++. ++.|--.-...||..|++ +|++|.++-.+..
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~ 76 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLR 76 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 3466665554 566888889999999997 6999999977644
No 426
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=21.98 E-value=2.3e+02 Score=28.97 Aligned_cols=64 Identities=14% Similarity=0.256 Sum_probs=40.2
Q ss_pred CCceEEeecchhh---hhcCCccceEee---ccCccchHHHHhhCCCeeeccCCCchhH--HH-HHHHhhhccEEEeC
Q 013836 308 GRGYIVKWAPQQQ---VLAHPAVGCFWT---HSGWNSTLESICEGIPMICQPYFGDQMV--NS-RYVSHAWRVGLQLE 376 (435)
Q Consensus 308 ~~~~~~~~~p~~~---ll~~~~v~~~I~---HGG~gs~~eal~~GvP~v~~P~~~DQ~~--na-~~v~~~~G~g~~~~ 376 (435)
.|.++.+-.|..+ =+.-+++ |.- =||..|..|+|.-|||+|..+ ++|+. |+ ..++. +|+-..+.
T Consensus 489 eRL~f~p~~~~~~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~-agi~e~vA 561 (620)
T COG3914 489 ERLRFLPPAPNEDHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATN-AGIPELVA 561 (620)
T ss_pred hheeecCCCCCHHHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHh-cCCchhhc
Confidence 4566666555443 3344666 553 599999999999999999876 45543 22 34444 45544443
No 427
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.86 E-value=63 Score=29.83 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=0.0
Q ss_pred CCccceEeeccCccchHHHH---hhCCCeeeccC
Q 013836 324 HPAVGCFWTHSGWNSTLESI---CEGIPMICQPY 354 (435)
Q Consensus 324 ~~~v~~~I~HGG~gs~~eal---~~GvP~v~~P~ 354 (435)
.+++ +|.-||-||+.+++ ..++|+++++.
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~ 88 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILGINM 88 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeC
No 428
>PRK07773 replicative DNA helicase; Validated
Probab=21.84 E-value=4e+02 Score=29.36 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=29.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeCC
Q 013836 17 VILFPLPFQGHINPMLQLGSILYSE-GFSITIIHTT 51 (435)
Q Consensus 17 il~~~~~~~GHv~p~l~La~~L~~r-GH~Vt~~~~~ 51 (435)
+++.--|+.|--...+.+|...+.+ |..|.+++-.
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlE 255 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLE 255 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 5667778889999999999888755 8899999874
No 429
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=21.82 E-value=1.2e+02 Score=23.87 Aligned_cols=25 Identities=4% Similarity=0.147 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 28 INPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 28 v~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
+.|++.+.-...-|||++|++.|..
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~y 33 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKY 33 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHH
Confidence 4567777777778999999999953
No 430
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=21.81 E-value=85 Score=28.74 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=25.8
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
.+++-++++..+.| + -..+|+.|++|||+|+++.-.
T Consensus 4 ~~~~~~lITGASsG-I--G~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 4 MKGKTALITGASSG-I--GAELAKQLARRGYNLILVARR 39 (265)
T ss_pred CCCcEEEEECCCch-H--HHHHHHHHHHCCCEEEEEeCc
Confidence 34555666644443 3 367899999999999999874
No 431
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=21.79 E-value=1.1e+02 Score=29.31 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=32.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
=|.=++.|++|-.--.+.|++.|.++|++|.+++-..
T Consensus 60 sVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGY 96 (338)
T PRK01906 60 VVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRGY 96 (338)
T ss_pred EECCccCCCCChHHHHHHHHHHHHHcCCceEEEecCC
Confidence 3445788899999999999999999999999999744
No 432
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=21.71 E-value=2.4e+02 Score=18.40 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHH
Q 013836 380 ERKEIERAILRVMVKAD--SQEMRERATYLNEKVD 412 (435)
Q Consensus 380 ~~~~l~~~i~~vl~~~~--~~~~~~~a~~l~~~~~ 412 (435)
|.++|.++|..+|.+.+ --+.|+=-+++.+++.
T Consensus 1 td~~i~~~i~~iL~~~dl~~vT~k~vr~~Le~~~~ 35 (54)
T PF08766_consen 1 TDEEIREAIREILREADLDTVTKKQVREQLEERFG 35 (54)
T ss_dssp -HHHHHHHHHHHHTTS-GGG--HHHHHHHHHHH-S
T ss_pred CHHHHHHHHHHHHHhCCHhHhhHHHHHHHHHHHHC
Confidence 45788888888887644 2233444444444443
No 433
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=21.70 E-value=1.6e+02 Score=29.11 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=21.9
Q ss_pred CCccEEEEcCchhhHHHHHHHcCCCeEEEc
Q 013836 118 DSFACLITDAAWFIALSVANDFKLPTIVLL 147 (435)
Q Consensus 118 ~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~ 147 (435)
.+||++|... ....+|+++|||++.+.
T Consensus 376 ~~pDliiG~s---~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 376 EPVDLLIGNT---YGKYIARDTDIPLVRFG 402 (435)
T ss_pred cCCCEEEECc---cHHHHHHHhCCCEEEee
Confidence 5799999886 35789999999998653
No 434
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=21.64 E-value=2.7e+02 Score=21.59 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=33.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceE
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPNSCNYPHFEF 65 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~ 65 (435)
-.++++. ...|.-.-.+..++.+.++|..|..+|.....+. .+..++.+
T Consensus 48 ~d~vi~i-S~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~l-a~~ad~~l 96 (128)
T cd05014 48 GDVVIAI-SNSGETDELLNLLPHLKRRGAPIIAITGNPNSTL-AKLSDVVL 96 (128)
T ss_pred CCEEEEE-eCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCch-hhhCCEEE
Confidence 3444333 4557888899999999999999999999544333 33344433
No 435
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=21.56 E-value=2.5e+02 Score=26.83 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=26.2
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEeCC
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGF-SITIIHTT 51 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH-~Vt~~~~~ 51 (435)
++.||+++=.|+-| -.+++.|+..|+ +|+++-.+
T Consensus 23 ~~~~VlVvG~GglG-----s~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALG-----TANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCeEEEEeCC
Confidence 46788888777665 456889999999 78877774
No 436
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=21.56 E-value=2.4e+02 Score=25.25 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=30.2
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 013836 23 PFQGHINPMLQLGSILYSEGFSITIIHTTLNSPN 56 (435)
Q Consensus 23 ~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~ 56 (435)
|+-|--.-.+.||.+|+++|-.|+++-.+++.+.
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 4559999999999999999999999999877644
No 437
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=21.55 E-value=4.1e+02 Score=25.83 Aligned_cols=74 Identities=19% Similarity=0.311 Sum_probs=49.0
Q ss_pred hhhcCCccceEeeccCccchHHHHhhCCCeeeccCCCchhHHHHHHHhhhccE---EEeCCcCCHHHHHHHHHHHHcCCc
Q 013836 320 QVLAHPAVGCFWTHSGWNSTLESICEGIPMICQPYFGDQMVNSRYVSHAWRVG---LQLEGKLERKEIERAILRVMVKAD 396 (435)
Q Consensus 320 ~ll~~~~v~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g---~~~~~~~~~~~l~~~i~~vl~~~~ 396 (435)
.+++++++ +|. .=+=|+.-|++.|+|.+++-... -+....++ +|+- +.+. .++.+.+...+.+.+.+-
T Consensus 281 ~~l~~~dl--~Vg-~R~HsaI~al~~g~p~i~i~Y~~---K~~~l~~~-~gl~~~~~~i~-~~~~~~l~~~~~e~~~~~- 351 (385)
T COG2327 281 GILAACDL--IVG-MRLHSAIMALAFGVPAIAIAYDP---KVRGLMQD-LGLPGFAIDID-PLDAEILSAVVLERLTKL- 351 (385)
T ss_pred HHhccCce--EEe-ehhHHHHHHHhcCCCeEEEeecH---HHHHHHHH-cCCCcccccCC-CCchHHHHHHHHHHHhcc-
Confidence 46777877 662 22336788999999999887643 33344444 4554 4444 599999999988888763
Q ss_pred hHHHHHH
Q 013836 397 SQEMRER 403 (435)
Q Consensus 397 ~~~~~~~ 403 (435)
++.+++
T Consensus 352 -~~~~~~ 357 (385)
T COG2327 352 -DELRER 357 (385)
T ss_pred -HHHHhh
Confidence 555555
No 438
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=21.53 E-value=1.8e+02 Score=22.61 Aligned_cols=30 Identities=13% Similarity=0.346 Sum_probs=26.1
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 013836 24 FQGHINPMLQLGSILYSEGFSITIIHTTLN 53 (435)
Q Consensus 24 ~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~ 53 (435)
..|+-..++.+++.+.++|..|..+|....
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTT
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCC
Confidence 668889999999999999999999998443
No 439
>PRK07308 flavodoxin; Validated
Probab=21.49 E-value=1.8e+02 Score=23.56 Aligned_cols=37 Identities=8% Similarity=0.112 Sum_probs=26.5
Q ss_pred CCCCEEEEEcCCCccChHH-HHHHHHHHHhCCCeEEEEeC
Q 013836 12 RNGRRVILFPLPFQGHINP-MLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p-~l~La~~L~~rGH~Vt~~~~ 50 (435)
|++.+|++.+ .+|+..- .-.|++.|.++|++|.+.-.
T Consensus 1 m~~~~IvY~S--~tGnTe~iA~~ia~~l~~~g~~~~~~~~ 38 (146)
T PRK07308 1 MALAKIVYAS--MTGNTEEIADIVADKLRELGHDVDVDEC 38 (146)
T ss_pred CceEEEEEEC--CCchHHHHHHHHHHHHHhCCCceEEEec
Confidence 5666666655 5577666 55678888889999987654
No 440
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=21.37 E-value=1.2e+02 Score=29.86 Aligned_cols=37 Identities=14% Similarity=0.071 Sum_probs=26.4
Q ss_pred CCCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 10 LPRNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 10 ~~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
..+++.||+++=. +.+++ ..++.|...+++||++...
T Consensus 6 ~~~~~~~vVIvGg-G~aGl----~~a~~L~~~~~~ItlI~~~ 42 (424)
T PTZ00318 6 ARLKKPNVVVLGT-GWAGA----YFVRNLDPKKYNITVISPR 42 (424)
T ss_pred cCCCCCeEEEECC-CHHHH----HHHHHhCcCCCeEEEEcCC
Confidence 4566788888764 44443 4578887678999999874
No 441
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=21.33 E-value=2e+02 Score=28.07 Aligned_cols=43 Identities=9% Similarity=0.009 Sum_probs=32.4
Q ss_pred CCCCCEEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEeC-CCC
Q 013836 11 PRNGRRVILFPL--PFQGHINPMLQLGSILYSEGFSITIIHT-TLN 53 (435)
Q Consensus 11 ~~~~~~il~~~~--~~~GHv~p~l~La~~L~~rGH~Vt~~~~-~~~ 53 (435)
+.++++|+.+.. |+-|--.-.+.||..|+.+|++|.++=- +++
T Consensus 102 ~~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ 147 (387)
T PHA02519 102 DDKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQ 147 (387)
T ss_pred CCCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 344566654443 4559999999999999999999999973 543
No 442
>PRK04148 hypothetical protein; Provisional
Probab=21.31 E-value=94 Score=25.13 Aligned_cols=33 Identities=12% Similarity=0.320 Sum_probs=25.1
Q ss_pred CCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 14 GRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
.++|+.+=.| .| ..+|+.|++.||+|+.+=...
T Consensus 17 ~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 17 NKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred CCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECCH
Confidence 4788888776 33 346888999999999988743
No 443
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=21.28 E-value=1.2e+02 Score=27.61 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=27.1
Q ss_pred CEEEEEcCCCc---cChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 15 RRVILFPLPFQ---GHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 15 ~~il~~~~~~~---GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
||+.|++.|.. |-=.-.-+|++.|..||+.|+.+--++
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DP 41 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDP 41 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeecc
Confidence 57788887754 555668899999999999999998764
No 444
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=21.23 E-value=1.3e+02 Score=29.70 Aligned_cols=27 Identities=7% Similarity=-0.081 Sum_probs=22.3
Q ss_pred CCccEEEEcCchhhHHHHHHHcCCCeEEEc
Q 013836 118 DSFACLITDAAWFIALSVANDFKLPTIVLL 147 (435)
Q Consensus 118 ~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~ 147 (435)
.+||++|.... ...+|+++|||++.+.
T Consensus 368 ~~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 368 LKPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred hCCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 58999999864 5678999999997654
No 445
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=21.21 E-value=1.8e+02 Score=25.96 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=27.5
Q ss_pred CCccCCCCCCCCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 1 METQQDPCKLPRNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 1 ~~~~~~~~~~~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
|||-++-... +.+++++ + |+.|.+ -..+++.|.++|++|+++..
T Consensus 1 ~~~~~~~~~~--~~k~ilI-t-Ga~g~I--G~~la~~l~~~G~~V~~~~r 44 (259)
T PRK08213 1 MMTVLELFDL--SGKTALV-T-GGSRGL--GLQIAEALGEAGARVVLSAR 44 (259)
T ss_pred CCcchhhhCc--CCCEEEE-E-CCCchH--HHHHHHHHHHcCCEEEEEeC
Confidence 4555443332 2344444 3 455555 36789999999999987765
No 446
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=21.20 E-value=1.7e+02 Score=27.80 Aligned_cols=37 Identities=16% Similarity=0.082 Sum_probs=25.9
Q ss_pred CCCCCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 10 LPRNGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 10 ~~~~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
.-++.++|++. |+.|-+-.. |+++|.++|++|+.+..
T Consensus 11 ~~~~~~~vlVt--GatGfiG~~--lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 11 LVLAPKRWLIT--GVAGFIGSG--LLEELLFLNQTVIGLDN 47 (348)
T ss_pred ccccCCEEEEE--CCccHHHHH--HHHHHHHCCCEEEEEeC
Confidence 44556775544 566655543 78999999999988765
No 447
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=21.09 E-value=74 Score=29.01 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=25.9
Q ss_pred CCccEEEE-cCch-hhHHHHHHHcCCCeEEEcccchHH
Q 013836 118 DSFACLIT-DAAW-FIALSVANDFKLPTIVLLTDSIAA 153 (435)
Q Consensus 118 ~~~Dlvi~-D~~~-~~~~~~A~~~giP~v~~~~~~~~~ 153 (435)
..||+||+ |+-. ..+..=|.++|||+|.+.-+..-+
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~dp 193 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNCDP 193 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCCCC
Confidence 35888884 5433 566778899999999987665444
No 448
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=21.08 E-value=1.3e+02 Score=30.10 Aligned_cols=39 Identities=21% Similarity=0.083 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 13 NGRRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
+.+||++...|+.+ .+=...|.+.|.++|++|.++.++.
T Consensus 69 ~~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~s 107 (475)
T PRK13982 69 ASKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKA 107 (475)
T ss_pred CCCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcC
Confidence 35778877665444 4478899999999999999999953
No 449
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=21.08 E-value=1.1e+02 Score=31.66 Aligned_cols=28 Identities=18% Similarity=0.417 Sum_probs=23.3
Q ss_pred CCccceEeeccCcc------chHHHHhhCCCeeecc
Q 013836 324 HPAVGCFWTHSGWN------STLESICEGIPMICQP 353 (435)
Q Consensus 324 ~~~v~~~I~HGG~g------s~~eal~~GvP~v~~P 353 (435)
.+.| +++|.|-| .+++|...++|+|++.
T Consensus 78 ~~gv--~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 78 KPGV--VIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CCeE--EEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3555 89998888 5789999999999985
No 450
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=20.96 E-value=2e+02 Score=26.38 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=22.3
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 23 PFQGHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 23 ~~~GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
|+.|-+- ..|+++|.++||+|..+...
T Consensus 7 G~tGfiG--~~l~~~L~~~g~~V~~~~r~ 33 (314)
T COG0451 7 GGAGFIG--SHLVERLLAAGHDVRGLDRL 33 (314)
T ss_pred cCcccHH--HHHHHHHHhCCCeEEEEeCC
Confidence 4456555 78999999999999999974
No 451
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.91 E-value=2.2e+02 Score=22.73 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=21.1
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeCC
Q 013836 26 GHINPMLQLGSILYSEGFSITIIHTT 51 (435)
Q Consensus 26 GHv~p~l~La~~L~~rGH~Vt~~~~~ 51 (435)
-.+--.+=+...|.++|++||+..++
T Consensus 16 ~qissaiYls~klkkkgf~v~Vaate 41 (148)
T COG4081 16 PQISSAIYLSHKLKKKGFDVTVAATE 41 (148)
T ss_pred ccchHHHHHHHHhhccCccEEEecCH
Confidence 34445677789999999999999995
No 452
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=20.80 E-value=3.3e+02 Score=19.60 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 013836 379 LERKEIERAILRVMVKADSQEMRERATYLNEKVDICLQQGGSSYQSLGRLTDHIMS 434 (435)
Q Consensus 379 ~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 434 (435)
..++.+.+.++.++++ ++.+.-..+.+.+. +|-+..+-+..+.+.+.+
T Consensus 3 p~~~~i~~i~~~~~~~----~~~~~~~~~~~l~~----~G~s~~~Il~~l~~~l~~ 50 (89)
T PF08542_consen 3 PPPEVIEEILESCLNG----DFKEARKKLYELLV----EGYSASDILKQLHEVLVE 50 (89)
T ss_dssp --HHHHHHHHHHHHHT----CHHHHHHHHHHHHH----TT--HHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhC----CHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHH
Confidence 3567777777777776 77777777777777 777888888888877654
No 453
>PRK05693 short chain dehydrogenase; Provisional
Probab=20.79 E-value=1.5e+02 Score=26.83 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=23.2
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
||.++++. +.|-+- ..+++.|.++|++|+.++-
T Consensus 1 mk~vlItG-asggiG--~~la~~l~~~G~~V~~~~r 33 (274)
T PRK05693 1 MPVVLITG-CSSGIG--RALADAFKAAGYEVWATAR 33 (274)
T ss_pred CCEEEEec-CCChHH--HHHHHHHHHCCCEEEEEeC
Confidence 45666664 444333 5788999999999988765
No 454
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=20.77 E-value=2.6e+02 Score=21.29 Aligned_cols=37 Identities=14% Similarity=0.353 Sum_probs=25.2
Q ss_pred CEEEEEcC--CCccC-hHHHHHHHHHHHhCC---CeEEEEeCC
Q 013836 15 RRVILFPL--PFQGH-INPMLQLGSILYSEG---FSITIIHTT 51 (435)
Q Consensus 15 ~~il~~~~--~~~GH-v~p~l~La~~L~~rG---H~Vt~~~~~ 51 (435)
|+|+++.. |.... ..-.+.++..+...| |+|.++...
T Consensus 1 k~v~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g 43 (122)
T PF02635_consen 1 KKVFFIVTSGPYDDERAKIALRLANAAAAMGDYGHDVVVFFHG 43 (122)
T ss_dssp EEEEEEE-S-TTTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-G
T ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEc
Confidence 34554444 33333 677888899999999 999999884
No 455
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=20.76 E-value=2.7e+02 Score=25.05 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=33.8
Q ss_pred CEEEEEcCCCccChHHHHHHHHHHHhCC-CeEEEEeCCCCC
Q 013836 15 RRVILFPLPFQGHINPMLQLGSILYSEG-FSITIIHTTLNS 54 (435)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~La~~L~~rG-H~Vt~~~~~~~~ 54 (435)
|||++.-=|+.|--.-.--|+++|.++| ++|..+-.+++.
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~ 41 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDS 41 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCC
Confidence 6888888888898888777799999986 999999997644
No 456
>PRK03202 6-phosphofructokinase; Provisional
Probab=20.71 E-value=81 Score=29.81 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=31.2
Q ss_pred hhhcCCccceEeeccCccchHHHHh---hCCCeeeccCCCc
Q 013836 320 QVLAHPAVGCFWTHSGWNSTLESIC---EGIPMICQPYFGD 357 (435)
Q Consensus 320 ~ll~~~~v~~~I~HGG~gs~~eal~---~GvP~v~~P~~~D 357 (435)
+-|..-++.++|.=||-+|+.-+.. +|+|+|++|-+-|
T Consensus 87 ~~l~~~~Id~Li~IGGd~s~~~a~~L~e~~i~vigiPkTID 127 (320)
T PRK03202 87 ENLKKLGIDALVVIGGDGSYMGAKRLTEHGIPVIGLPGTID 127 (320)
T ss_pred HHHHHcCCCEEEEeCChHHHHHHHHHHhcCCcEEEeccccc
Confidence 4566678888999999999987755 5999999998655
No 457
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=20.71 E-value=1.2e+02 Score=24.20 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCC
Q 013836 30 PMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 30 p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
..+...++|.++||.|+++|...
T Consensus 28 ~~ie~L~~l~~~G~~IiiaTGR~ 50 (126)
T TIGR01689 28 AVIEKLRHYKALGFEIVISSSRN 50 (126)
T ss_pred HHHHHHHHHHHCCCEEEEECCCC
Confidence 46666777789999999999953
No 458
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=20.65 E-value=84 Score=24.83 Aligned_cols=28 Identities=11% Similarity=-0.049 Sum_probs=23.0
Q ss_pred eEeeccCccchHHHHhh----C-----CCeeeccCCC
Q 013836 329 CFWTHSGWNSTLESICE----G-----IPMICQPYFG 356 (435)
Q Consensus 329 ~~I~HGG~gs~~eal~~----G-----vP~v~~P~~~ 356 (435)
.+|.-||-||+.|++.. . +|+.++|...
T Consensus 52 ~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GT 88 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGT 88 (124)
T ss_pred EEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCC
Confidence 38999999999998653 3 7899999865
No 459
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=20.61 E-value=1.2e+02 Score=26.55 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=19.0
Q ss_pred CCccEEEEcCch-------hhHHHHHHHcCCCeEEEccc
Q 013836 118 DSFACLITDAAW-------FIALSVANDFKLPTIVLLTD 149 (435)
Q Consensus 118 ~~~Dlvi~D~~~-------~~~~~~A~~~giP~v~~~~~ 149 (435)
.++|+|++|... ..+..++-.+++|+|.+.=.
T Consensus 88 ~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVAK~ 126 (206)
T PF04493_consen 88 NKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVAKS 126 (206)
T ss_dssp S--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEESS
T ss_pred ccCCEEEEeCceeecCCCcChhheeeeccCCCEEEEeCc
Confidence 579999999743 22344566678999997543
No 460
>PRK05858 hypothetical protein; Provisional
Probab=20.49 E-value=1.7e+02 Score=29.89 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=22.9
Q ss_pred CCccceEeeccCcc------chHHHHhhCCCeeecc
Q 013836 324 HPAVGCFWTHSGWN------STLESICEGIPMICQP 353 (435)
Q Consensus 324 ~~~v~~~I~HGG~g------s~~eal~~GvP~v~~P 353 (435)
.+.+ ++.|.|-| .+++|-..++|+|++.
T Consensus 67 ~~gv--~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 67 VPGV--AVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred CCeE--EEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 3455 88888766 7899999999999986
No 461
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=20.46 E-value=1.4e+02 Score=28.10 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=31.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCC
Q 013836 17 VILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTL 52 (435)
Q Consensus 17 il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~ 52 (435)
|.=++.|++|-.--.+.|++.|.++|++|.+++-..
T Consensus 33 VGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGY 68 (311)
T TIGR00682 33 VGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGY 68 (311)
T ss_pred EeccccCCcChHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 445678899999999999999999999999998743
No 462
>PRK06194 hypothetical protein; Provisional
Probab=20.33 E-value=1.7e+02 Score=26.66 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=22.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeC
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHT 50 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~ 50 (435)
+.++++. +.|-+ -..|+++|.++|++|+++..
T Consensus 7 k~vlVtG-asggI--G~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 7 KVAVITG-AASGF--GLAFARIGAALGMKLVLADV 38 (287)
T ss_pred CEEEEeC-CccHH--HHHHHHHHHHCCCEEEEEeC
Confidence 3445553 44444 35688999999999988765
No 463
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=20.28 E-value=81 Score=28.11 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=25.8
Q ss_pred CCccEEEE-cCch-hhHHHHHHHcCCCeEEEcccchHH
Q 013836 118 DSFACLIT-DAAW-FIALSVANDFKLPTIVLLTDSIAA 153 (435)
Q Consensus 118 ~~~Dlvi~-D~~~-~~~~~~A~~~giP~v~~~~~~~~~ 153 (435)
..||+||+ |+.. ..+..=|.++|||+|.+.-+..-+
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~~p 191 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNCDP 191 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCCCC
Confidence 35888884 5433 556778889999999987665444
No 464
>PHA02542 41 41 helicase; Provisional
Probab=20.19 E-value=1.3e+02 Score=30.16 Aligned_cols=45 Identities=18% Similarity=0.063 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhccCCcCCCCccEEEEcCchhhHHH----------------------HHHHcCCCeEEEc
Q 013836 99 VPFRDCLANKLMSNAQESKDSFACLITDAAWFIALS----------------------VANDFKLPTIVLL 147 (435)
Q Consensus 99 ~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~~~~~----------------------~A~~~giP~v~~~ 147 (435)
..++..++++....+ .++|+||+|++..-... +|.+++||++.++
T Consensus 285 ~~ir~~~rrlk~~~g----~~~dlVvIDYLqL~~~~~~~~~~~nr~~ei~~Isr~LK~lAkel~vpVi~ls 351 (473)
T PHA02542 285 GHFRALLNELKLKKN----FKPDVIIVDYLGICASSRLRVSSENSYTYVKAIAEELRGLAVEHDVVVWTAA 351 (473)
T ss_pred HHHHHHHHHHHHhcC----CCCCEEEEechhhccCCcccCCCCChHHHHHHHHHHHHHHHHHhCCeEEEEE
No 465
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=20.19 E-value=1.3e+02 Score=26.89 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=28.4
Q ss_pred CCCccChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 013836 22 LPFQGHINPMLQLGSILYSEGFSITIIHTTLNS 54 (435)
Q Consensus 22 ~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~ 54 (435)
.|+.|--.-+..|+++|.++|.+|.+-||....
T Consensus 5 vG~gGKTtl~~~l~~~~~~~g~~v~~TTTT~m~ 37 (232)
T TIGR03172 5 VGAGGKTSTMFWLAAEYRKEGYRVLVTTTTRMF 37 (232)
T ss_pred EcCCcHHHHHHHHHHHHHHCCCeEEEECCcccc
Confidence 355788888999999999999999999997654
No 466
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=20.11 E-value=5.4e+02 Score=21.79 Aligned_cols=97 Identities=13% Similarity=0.148 Sum_probs=46.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeCCCCCCC------CCCCCCceEEEccCCCCCCCCCCCCCCCCHHHH
Q 013836 16 RVILFPLPFQGHINPMLQLGSILYSEGFSITIIHTTLNSPN------SCNYPHFEFCSFSDDGFSETYQPSKVADDIPAL 89 (435)
Q Consensus 16 ~il~~~~~~~GHv~p~l~La~~L~~rGH~Vt~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (435)
.|.+++..+.|-....+.+|-+-+.+|.+|.++---..... ....+++.+.... .++... ..+...-
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~~g-~~f~~~------~~~~~~~ 77 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKLPNVEIERFG-KGFVWR------MNEEEED 77 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGGT--EEEE---TT----------GGGHHHH
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhCCeEEEEEcC-Cccccc------CCCcHHH
Confidence 46778888888888888887777777888888766211010 1122457777777 333211 1111111
Q ss_pred HHHHHHhcchHHHHHHHHHHhccCCcCCCCccEEEEcCchh
Q 013836 90 LLSLNAKCIVPFRDCLANKLMSNAQESKDSFACLITDAAWF 130 (435)
Q Consensus 90 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~Dlvi~D~~~~ 130 (435)
...+...++...+.+.. .++|+||.|-...
T Consensus 78 ----~~~~~~~~~~a~~~i~~-------~~~dlvILDEi~~ 107 (172)
T PF02572_consen 78 ----RAAAREGLEEAKEAISS-------GEYDLVILDEINY 107 (172)
T ss_dssp ----HHHHHHHHHHHHHHTT--------TT-SEEEEETHHH
T ss_pred ----HHHHHHHHHHHHHHHhC-------CCCCEEEEcchHH
Confidence 23333344344444433 6799999997553
No 467
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=20.11 E-value=1.8e+02 Score=29.56 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=22.6
Q ss_pred CCccEEEEcCchhhHHHHHHHcCCCeEEEcc
Q 013836 118 DSFACLITDAAWFIALSVANDFKLPTIVLLT 148 (435)
Q Consensus 118 ~~~Dlvi~D~~~~~~~~~A~~~giP~v~~~~ 148 (435)
.+||+||.+. ....+|+++|||++.++.
T Consensus 363 ~~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 363 LEPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred cCCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 5799999996 456678999999987644
Done!