BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013837
(435 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359497050|ref|XP_002267854.2| PREDICTED: splicing factor U2af large subunit B-like, partial
[Vitis vinifera]
Length = 410
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 262/300 (87%), Positives = 277/300 (92%)
Query: 112 SGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQAT 171
SGFDMAPP AA+LPGAAVPG+LPGVP VP M QNM PFGATQLGA PLMPVQ MTQQAT
Sbjct: 44 SGFDMAPPVAALLPGAAVPGELPGVPQMVPGMIQNMFPFGATQLGALPLMPVQAMTQQAT 103
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRT 231
RHARRVYVGGLPPLANEQ IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR+
Sbjct: 104 RHARRVYVGGLPPLANEQTIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRS 163
Query: 232 VEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGA 291
VEEASNAMALDGI+FEGV+VRVRRPTDYNP+LAAALGP QPSP+LNLAAVGL G IGGA
Sbjct: 164 VEEASNAMALDGIMFEGVSVRVRRPTDYNPSLAAALGPSQPSPHLNLAAVGLMPGVIGGA 223
Query: 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDI 351
EGPDR+FVGGLPYYFTE QI+ELLESFG L GFDLVKDRDTGNSKGYGFCVYQDPAVTDI
Sbjct: 224 EGPDRIFVGGLPYYFTEEQIRELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDPAVTDI 283
Query: 352 ACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGG 411
ACAALNGLKMGDKTLTVRRAT SGQ+K+EQ++ILAQAQQHIAIQK+ALQ G+N G G
Sbjct: 284 ACAALNGLKMGDKTLTVRRATVGSGQAKSEQDNILAQAQQHIAIQKIALQAGGLNLPGAG 343
>gi|296088196|emb|CBI35712.3| unnamed protein product [Vitis vinifera]
Length = 412
Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust.
Identities = 248/301 (82%), Positives = 264/301 (87%), Gaps = 3/301 (0%)
Query: 131 GQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQA 190
G+LPGVP VP M QNM PFGATQLGA PLMPVQ MTQQATRHARRVYVGGLPPLANEQ
Sbjct: 105 GELPGVPQMVPGMIQNMFPFGATQLGALPLMPVQAMTQQATRHARRVYVGGLPPLANEQT 164
Query: 191 IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250
IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR+VEEASNAMALDGI+FE
Sbjct: 165 IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIMFEACL 224
Query: 251 VRV-RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTET 309
+ PTDYNP+LAAALGP QPSP+LNLAAVGL G IGGAEGPDR+FVGGLPYYFTE
Sbjct: 225 TLIFSLPTDYNPSLAAALGPSQPSPHLNLAAVGLMPGVIGGAEGPDRIFVGGLPYYFTEE 284
Query: 310 QIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369
QI+ELLESFG L GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR
Sbjct: 285 QIRELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 344
Query: 370 RATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSL--FGETLAKVLCLTE 427
RAT SGQ+K+EQ++ILAQAQQHIAIQK+ALQ G+N G GM+ ET KVLCLTE
Sbjct: 345 RATVGSGQAKSEQDNILAQAQQHIAIQKIALQAGGLNLPGAGMAFTAIAETPTKVLCLTE 404
Query: 428 M 428
+
Sbjct: 405 V 405
>gi|388520789|gb|AFK48456.1| unknown [Lotus japonicus]
Length = 527
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 268/413 (64%), Positives = 315/413 (76%), Gaps = 16/413 (3%)
Query: 25 RSRTGER--GRDRHHRDFKSGGDDRRRDKNYKYDREGIRDHDRTDRHRDYNRDKERRHRH 82
R + GER DRHHRD+K GG + R D+ Y+R RD+DR H D +D ERRH++
Sbjct: 34 RKQDGERRDFHDRHHRDYKDGGFNGR-DRYNSYNRHRSRDYDR---HNDRVKDGERRHKY 89
Query: 83 RSRSHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPE 142
+ S R R S+S S S S S+SKR SGFDMAPP+A +AV GQ G+
Sbjct: 90 EAHS---KRSRGESRSPSRSPSRSESKRVSGFDMAPPSADGT--SAVSGQTLGINHLNQG 144
Query: 143 MAQNMLPFGATQ--LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMT 200
AQN FG +Q +GA LM VQ MTQQATRHARRVY+GGLPPL NEQ+IATFFS VMT
Sbjct: 145 TAQNFSLFGISQPQIGALSLMQVQPMTQQATRHARRVYIGGLPPLTNEQSIATFFSHVMT 204
Query: 201 AIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYN 260
AIGGNSAG GD+VVNVYINHEKKFAF+EMRTVEEASNAM+LDGI+FEGV+VRVRRPTDYN
Sbjct: 205 AIGGNSAGAGDSVVNVYINHEKKFAFLEMRTVEEASNAMSLDGIVFEGVSVRVRRPTDYN 264
Query: 261 PTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT 320
PTLAAALGP QPSP LNL+AVGL+ G IGG +G DR+FVGGLPYYF E QI+ELL++FG
Sbjct: 265 PTLAAALGPCQPSPYLNLSAVGLSGGTIGGTDGLDRIFVGGLPYYFAEEQIRELLQAFGP 324
Query: 321 LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKT 380
L FDLV+D++TGNSKGYGFC+YQDPAVTD+ACA+LNGLK+GDKTLTVRRAT SG SKT
Sbjct: 325 LRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASLNGLKVGDKTLTVRRATV-SGHSKT 383
Query: 381 EQESILAQAQQHIAIQKMALQTSGMNTLGGGM--SLFGETLAKVLCLTEMMKS 431
EQE I AQAQQ+I +QK+AL+ G+N G + E+ KVLCLTE + +
Sbjct: 384 EQEHIFAQAQQNITMQKVALEVVGLNIPGVERVPTTIDESATKVLCLTEAITT 436
>gi|156070760|gb|ABU45175.1| unknown [Solanum melongena]
Length = 553
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 247/365 (67%), Positives = 284/365 (77%), Gaps = 25/365 (6%)
Query: 67 DRHRDYNRDKERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPAAAMLPG 126
DR R+ ++D+E RHRH+ S + R SRSPSKSKR SGFDMAPP +A+L G
Sbjct: 117 DRRRNNDKDREDRHRHKPSSRARSR----------SRSPSKSKRISGFDMAPPTSALLSG 166
Query: 127 AA-VPGQLPGVPS-AVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPP 184
A V GQ+PG+ + ++P M NM P A Q GA P+MPVQ MTQQATRHARRVYVGGLPP
Sbjct: 167 ATDVAGQVPGITNPSIPGMFSNMFPVAAGQFGALPVMPVQAMTQQATRHARRVYVGGLPP 226
Query: 185 LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGI 244
ANEQ++ATFFS VM AIGGN+AGPGDAVVNVYINHEKKFAFVEMR+VEEASNAMALDG+
Sbjct: 227 TANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGV 286
Query: 245 IFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPY 304
IFEG V+VRRP+DYNP+LAA LGP QPSPNLNLAAVGL G+ GG EGPDR+FVGGLPY
Sbjct: 287 IFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSSGGLEGPDRIFVGGLPY 346
Query: 305 YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK 364
YFTE+QI+ELLESFG L GFDLVKDR+TGNSKGY FCVYQD +VTDIACAALNG+KMGDK
Sbjct: 347 YFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDK 406
Query: 365 TLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLC 424
TLTVRRA Q EQES+L AQQ IA+Q+ LQ + T K+LC
Sbjct: 407 TLTVRRANQGITQPNPEQESVLLHAQQQIALQRFMLQPGALAT-------------KILC 453
Query: 425 LTEMM 429
LT+++
Sbjct: 454 LTQVV 458
>gi|188998293|gb|ACD67872.1| U2 snRNP auxiliary factor large subunit [Solanum melongena]
Length = 554
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 247/365 (67%), Positives = 284/365 (77%), Gaps = 25/365 (6%)
Query: 67 DRHRDYNRDKERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPAAAMLPG 126
DR R+ ++D+E RHRH+ S + R SRSPSKSKR SGFDMAPP +A+L G
Sbjct: 118 DRRRNNDKDREDRHRHKPSSRARSR----------SRSPSKSKRISGFDMAPPTSALLSG 167
Query: 127 AA-VPGQLPGVPS-AVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPP 184
A V GQ+PG+ + ++P M NM P A Q GA P+MPVQ MTQQATRHARRVYVGGLPP
Sbjct: 168 ATDVAGQVPGITNPSIPGMFSNMFPVAAGQFGALPVMPVQAMTQQATRHARRVYVGGLPP 227
Query: 185 LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGI 244
ANEQ++ATFFS VM AIGGN+AGPGDAVVNVYINHEKKFAFVEMR+VEEASNAMALDG+
Sbjct: 228 TANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGV 287
Query: 245 IFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPY 304
IFEG V+VRRP+DYNP+LAA LGP QPSPNLNLAAVGL G+ GG EGPDR+FVGGLPY
Sbjct: 288 IFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSSGGLEGPDRIFVGGLPY 347
Query: 305 YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK 364
YFTE+QI+ELLESFG L GFDLVKDR+TGNSKGY FCVYQD +VTDIACAALNG+KMGDK
Sbjct: 348 YFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDK 407
Query: 365 TLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLC 424
TLTVRRA Q EQES+L AQQ IA+Q+ LQ + T K+LC
Sbjct: 408 TLTVRRANQGITQPNPEQESVLLHAQQQIALQRFMLQPGALAT-------------KILC 454
Query: 425 LTEMM 429
LT+++
Sbjct: 455 LTQVV 459
>gi|156070776|gb|ABU45190.1| unknown [Capsicum frutescens]
Length = 551
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/319 (71%), Positives = 258/319 (80%), Gaps = 14/319 (4%)
Query: 112 SGFDMAPPAAAMLPGAA-VPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQA 170
SGFDMAPP +A+LPGA V GQ+PG ++P M NM P A Q GA P+MPVQ MTQQA
Sbjct: 153 SGFDMAPPTSALLPGATDVTGQVPGANPSIPGMFSNMFPLAAGQFGALPIMPVQAMTQQA 212
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
TRHARRVYVGGLPP ANEQ++ATFFS VM AIGGN+AGPGDAVVNVYINHEKKFAFVEMR
Sbjct: 213 TRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMR 272
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
+VEEASNAMALDG+IFEG V+VRRP+DYNP+LAA LGP QPSPNLNLAAVGL G+ GG
Sbjct: 273 SVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSSGG 332
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
EGPDR+FVGGLPYYFTE+QI+ELLESFG L GFDLVKDR+TGNSKGY FCVYQD +VTD
Sbjct: 333 LEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTD 392
Query: 351 IACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGG 410
IACAALNG+KMGDKTLTVRRA + Q EQES+L AQQ IA+Q+ LQ + T
Sbjct: 393 IACAALNGIKMGDKTLTVRRANQGTNQPNPEQESVLLHAQQQIALQRFMLQPGALAT--- 449
Query: 411 GMSLFGETLAKVLCLTEMM 429
KVLCLT+++
Sbjct: 450 ----------KVLCLTQVV 458
>gi|75338883|sp|Q9ZR39.1|U2A2A_NICPL RecName: Full=Splicing factor U2af large subunit A; AltName:
Full=NpU2AF65a; AltName: Full=U2 auxiliary factor 65 kDa
subunit A; AltName: Full=U2 small nuclear
ribonucleoprotein auxiliary factor large subunit A;
Short=U2 snRNP auxiliary factor large subunit A
gi|3850823|emb|CAA77136.1| U2 snRNP auxiliary factor, large subunit [Nicotiana
plumbaginifolia]
Length = 555
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 227/319 (71%), Positives = 256/319 (80%), Gaps = 14/319 (4%)
Query: 112 SGFDMAPPAAAMLPGAA-VPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQA 170
SGFDMAPP A+LPGA GQ+PG A+P + NM P ++Q GA P+MPVQ MTQQA
Sbjct: 157 SGFDMAPPTTALLPGATDAAGQVPGTNPAIPGLFSNMFPLASSQFGALPMMPVQAMTQQA 216
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
TRHARRVYVGGLPP ANEQ++ATFFS VM AIGGN+AGPGDAVVNVYINHEKKFAFVEMR
Sbjct: 217 TRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMR 276
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
+VEEASNAMALDG+IFEG V+VRRP+DYNP+LAA LGP QPSPNLNLAAVG G+ GG
Sbjct: 277 SVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGSTPGSSGG 336
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
EGPDR+FVGGLPYYFTE+QI+ELLESFG L GFDLVKDR+TGNSKGY FCVYQD +VTD
Sbjct: 337 LEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTD 396
Query: 351 IACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGG 410
IACAALNG+KMGDKTLTVRRA + Q EQES+L AQQ IA+Q+ LQ + T
Sbjct: 397 IACAALNGIKMGDKTLTVRRANQGTTQPNPEQESVLLHAQQQIALQRFMLQPGALAT--- 453
Query: 411 GMSLFGETLAKVLCLTEMM 429
KVLCLTE++
Sbjct: 454 ----------KVLCLTEVV 462
>gi|156070797|gb|ABU45209.1| unknown [Solanum bulbocastanum]
Length = 558
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/320 (71%), Positives = 258/320 (80%), Gaps = 15/320 (4%)
Query: 112 SGFDMAPPAAAMLPGAA-VPGQLPGVPS-AVPEMAQNMLPFGATQLGAFPLMPVQVMTQQ 169
SGFDMAPP +A+L GA V GQ+PG + ++P M NM P A Q GA P+MPVQ MTQQ
Sbjct: 159 SGFDMAPPTSALLSGATDVAGQVPGTTNPSIPGMFSNMFPLAAGQFGALPIMPVQAMTQQ 218
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEM 229
ATRHARRVYVGGLPP ANEQ++ATFFS VM AIGGN+AGPGDAVVNVYINHEKKFAFVEM
Sbjct: 219 ATRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEM 278
Query: 230 RTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIG 289
R+VEEASNAMALDG++FEG V+VRRP+DYNP+LAA LGP QPSPNLNLAAVGL G+ G
Sbjct: 279 RSVEEASNAMALDGVVFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSSG 338
Query: 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
G EGPDR+FVGGLPYYFTE+QI+ELLESFG L GFDLVKDR+TGNSKGY FCVYQD +VT
Sbjct: 339 GLEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVT 398
Query: 350 DIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLG 409
DIACAALNG+KMGDKTLTVRRA + Q EQES+L AQQ IA+Q+ LQ + T
Sbjct: 399 DIACAALNGIKMGDKTLTVRRANQGTTQPNPEQESVLLHAQQQIALQRFMLQPGALAT-- 456
Query: 410 GGMSLFGETLAKVLCLTEMM 429
KVLCLTE++
Sbjct: 457 -----------KVLCLTEVV 465
>gi|156070781|gb|ABU45194.1| unknown [Petunia integrifolia subsp. inflata]
Length = 557
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/319 (70%), Positives = 255/319 (79%), Gaps = 14/319 (4%)
Query: 112 SGFDMAPPAAAMLPGAA-VPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQA 170
SGFDMAPP +A+LPGA GQ+PG ++P M NM P + Q GA P+MP+Q MTQQA
Sbjct: 162 SGFDMAPPTSALLPGATDTAGQVPGASPSIPGMFSNMFPLTSGQFGALPVMPIQAMTQQA 221
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
TRHARRVYVGGLPP ANEQ++ATFFS VM AIGGN+AGPGDAVVNVYINHEKKFAFVEMR
Sbjct: 222 TRHARRVYVGGLPPSANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMR 281
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
+VEEASNAMALDG+IFEG V+VRRP+DYNP+LAA LGP QPSPNLNLAAVGL G+ GG
Sbjct: 282 SVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGSSGG 341
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
EGPDR+FVGGLPYYFTE+QI+ELLESFG L GFDLVKDR+TGNSKGY FCVYQD +VTD
Sbjct: 342 LEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTD 401
Query: 351 IACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGG 410
IACAALNG+KMGDKTLTVRRA + Q EQES+L AQQ IA+QK Q + T
Sbjct: 402 IACAALNGIKMGDKTLTVRRANQGTPQPNPEQESVLLHAQQQIALQKFMFQPGALAT--- 458
Query: 411 GMSLFGETLAKVLCLTEMM 429
KVLCLT+ +
Sbjct: 459 ----------KVLCLTQAV 467
>gi|449496757|ref|XP_004160219.1| PREDICTED: splicing factor U2af large subunit B-like [Cucumis
sativus]
Length = 587
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/319 (71%), Positives = 256/319 (80%), Gaps = 15/319 (4%)
Query: 113 GFDMAPPAAAMLPGA-AVPGQLPGVPSAVPEMAQNMLPFGATQ-LGAFPLMPVQVMTQQA 170
GFDMAPP A+L GA A GQ+PG A+P M M P Q GA P+MPVQ MTQQA
Sbjct: 190 GFDMAPPTTAILSGATAAAGQIPGTTPAIPGMFPTMFPLATGQPFGALPVMPVQAMTQQA 249
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
TRHARRVYVGGLPP ANEQ++ATFFSQVM AIGGN+AGPGDAVVNVYINHEKKFAFVEMR
Sbjct: 250 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMR 309
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
+VEEASNAMALDGIIFEG V+VRRP+DYNP+LAA LGP QP+PNLNLAAVGL G+ GG
Sbjct: 310 SVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGG 369
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
EGPDR+FVGGLPYYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQD +VTD
Sbjct: 370 LEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTD 429
Query: 351 IACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGG 410
IACAALNG+KMGDKTLTVRRA + Q K EQES+L AQQ IA+QK+ LQ ++T
Sbjct: 430 IACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLMLQPGAVST--- 486
Query: 411 GMSLFGETLAKVLCLTEMM 429
KVLCLT+++
Sbjct: 487 ----------KVLCLTQVV 495
>gi|449441167|ref|XP_004138355.1| PREDICTED: splicing factor U2af large subunit B-like [Cucumis
sativus]
Length = 587
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/319 (71%), Positives = 256/319 (80%), Gaps = 15/319 (4%)
Query: 113 GFDMAPPAAAMLPGA-AVPGQLPGVPSAVPEMAQNMLPFGATQ-LGAFPLMPVQVMTQQA 170
GFDMAPP A+L GA A GQ+PG A+P M M P Q GA P+MPVQ MTQQA
Sbjct: 190 GFDMAPPTTAILSGATAAAGQIPGTTPAIPGMFPTMFPLATGQPFGALPVMPVQAMTQQA 249
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
TRHARRVYVGGLPP ANEQ++ATFFSQVM AIGGN+AGPGDAVVNVYINHEKKFAFVEMR
Sbjct: 250 TRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMR 309
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
+VEEASNAMALDGIIFEG V+VRRP+DYNP+LAA LGP QP+PNLNLAAVGL G+ GG
Sbjct: 310 SVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGG 369
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
EGPDR+FVGGLPYYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQD +VTD
Sbjct: 370 LEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTD 429
Query: 351 IACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGG 410
IACAALNG+KMGDKTLTVRRA + Q K EQES+L AQQ IA+QK+ LQ ++T
Sbjct: 430 IACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQKLMLQPGAVST--- 486
Query: 411 GMSLFGETLAKVLCLTEMM 429
KVLCLT+++
Sbjct: 487 ----------KVLCLTQVV 495
>gi|75338884|sp|Q9ZR40.1|U2A2B_NICPL RecName: Full=Splicing factor U2af large subunit B; AltName:
Full=NpU2AF65b; AltName: Full=U2 auxiliary factor 65 kDa
subunit B; AltName: Full=U2 small nuclear
ribonucleoprotein auxiliary factor large subunit B;
Short=U2 snRNP auxiliary factor large subunit B
gi|3850821|emb|CAA77135.1| U2 snRNP auxiliary factor, large subunit [Nicotiana
plumbaginifolia]
Length = 573
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/321 (70%), Positives = 258/321 (80%), Gaps = 14/321 (4%)
Query: 112 SGFDMAPPAAAMLPG-AAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQA 170
SGFDMAPP +AMLPG A GQ+PG +P M NM P + Q GA P+MP+Q MTQQA
Sbjct: 175 SGFDMAPPTSAMLPGITAAAGQVPGTNPPIPGMFPNMFPLASGQFGALPVMPIQAMTQQA 234
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
TRHARRVYVGGLP ANEQ++ATFFS VM+AIGGN+AGPGDAVVNVYIN+EKKFAFVEMR
Sbjct: 235 TRHARRVYVGGLPAHANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINYEKKFAFVEMR 294
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
+VEEASNAMALDGIIFEG +VRRP+DYNP+LAA LGP QP+PNLNLAAVGL+ G+ GG
Sbjct: 295 SVEEASNAMALDGIIFEGAPCKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLSPGSAGG 354
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
EGPDR+FVGGLPYYFTE QI+ELLESFG L GFDLVKDR+TGNSKGY FCVYQD +VTD
Sbjct: 355 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDVSVTD 414
Query: 351 IACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGG 410
IACAALNG+KMGDKTLTVRRA + Q K EQES+L AQQ IA+Q++ LQ + + T
Sbjct: 415 IACAALNGIKMGDKTLTVRRANQGTTQPKPEQESVLLHAQQQIALQRLMLQPATLAT--- 471
Query: 411 GMSLFGETLAKVLCLTEMMKS 431
KVL LTE++ +
Sbjct: 472 ----------KVLSLTEVISA 482
>gi|356509477|ref|XP_003523474.1| PREDICTED: splicing factor U2af large subunit B-like [Glycine max]
Length = 600
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 232/326 (71%), Positives = 259/326 (79%), Gaps = 19/326 (5%)
Query: 112 SGFDMAPPAAAMLPGA-AVPGQLPGVPSAVPEMAQNMLPFGATQL---GAFPLMPVQVMT 167
SGFDMAPPA+AML GA AV GQ+ G +P M NM P +Q+ A P+MPVQ MT
Sbjct: 197 SGFDMAPPASAMLTGASAVAGQITGANPTIPGMFPNMFPLATSQMQQFSALPVMPVQAMT 256
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFV 227
QQATRHARRVYVGGLPP ANEQ++ATFFSQVM IGGN+AGPGDAVVNVYINH+KKFAFV
Sbjct: 257 QQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFV 316
Query: 228 EMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGA 287
EMR+VEEASNAMALDGIIFEG V+VRRPTDYNP+LAA LGP QP+PNLNL AVGL G+
Sbjct: 317 EMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGS 376
Query: 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
GG +GPDRVFVGGLPYYFTETQI+ELLE+FG L GFDLVKDR+TGNSKGY FCVYQD A
Sbjct: 377 AGGLDGPDRVFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLA 436
Query: 348 VTDIACAALNGLKMGDKTLTVRRAT--ASSGQSKTEQESILAQAQQHIAIQKMALQTSGM 405
VTDIACAALNG+KMGDKTLTVRRA A+ Q K EQESIL AQQ IA+QK+ LQ + +
Sbjct: 437 VTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPALV 496
Query: 406 NTLGGGMSLFGETLAKVLCLTEMMKS 431
T KV+CLT + S
Sbjct: 497 AT-------------KVVCLTHAVSS 509
>gi|168028774|ref|XP_001766902.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681881|gb|EDQ68304.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 486
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 231/321 (71%), Positives = 258/321 (80%), Gaps = 21/321 (6%)
Query: 110 RRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQ-LGAFPLMPVQVMTQ 168
+ SGFDMAPP A + V GQ+PG+P A+P + M PFG TQ G P MP Q MTQ
Sbjct: 96 KTSGFDMAPPGATV-----VAGQIPGMPPAMPGVFPAMFPFGGTQQFGGLPGMPAQAMTQ 150
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVE 228
QATRHARRVYVGGLPP+ANEQ IAT+FSQVM A+GGN+AGPGDAVVNVYIN EKKFAFVE
Sbjct: 151 QATRHARRVYVGGLPPMANEQTIATYFSQVMAAVGGNTAGPGDAVVNVYINQEKKFAFVE 210
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
MRTVEEASNAMALDGIIFEGV+VRVRRP+DYNP++AA LGP QPSP+LNLAAVGL GA
Sbjct: 211 MRTVEEASNAMALDGIIFEGVSVRVRRPSDYNPSMAATLGPSQPSPHLNLAAVGLTPGAA 270
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GGA+GPDR+FVGGLPYY TE QIKELLESFG L GFDLVKDRDTGNSKGYGFCVYQDP+V
Sbjct: 271 GGADGPDRIFVGGLPYYLTEVQIKELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDPSV 330
Query: 349 TDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTL 408
DIACA LNG+KM DKTL VRRATA SGQ K +Q ++LA AQQ IAIQK+ALQ
Sbjct: 331 VDIACATLNGMKMDDKTLNVRRATA-SGQPKPDQANVLAHAQQQIAIQKLALQA------ 383
Query: 409 GGGMSLFGETLAKVLCLTEMM 429
+T KV+ LTE++
Sbjct: 384 --------KTPTKVVALTEVV 396
>gi|356517814|ref|XP_003527581.1| PREDICTED: splicing factor U2af large subunit A-like [Glycine max]
Length = 605
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 231/326 (70%), Positives = 258/326 (79%), Gaps = 19/326 (5%)
Query: 112 SGFDMAPPAAAMLPGA-AVPGQLPGVPSAVPEMAQNMLPFGATQL---GAFPLMPVQVMT 167
SGFDMAPPA+AML GA AV GQ+ G +P M NM P Q+ A P+MPVQ MT
Sbjct: 202 SGFDMAPPASAMLAGASAVAGQITGANPTIPGMFPNMFPLATNQMQQFSALPVMPVQAMT 261
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFV 227
QQATRHARRVYVGGLPP ANEQ++ATFFSQVM IGGN+AGPGDAVVNVYINH+KKFAFV
Sbjct: 262 QQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFV 321
Query: 228 EMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGA 287
EMR+VEEASNAMALDGIIFEG V+VRRPTDYNP+LAA LGP QP+PNLNL AVGL G+
Sbjct: 322 EMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGS 381
Query: 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
GG +GPDR+FVGGLPYYFTETQI+ELLE+FG L GFDLVKDR+TGNSKGY FCVYQD A
Sbjct: 382 AGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLA 441
Query: 348 VTDIACAALNGLKMGDKTLTVRRAT--ASSGQSKTEQESILAQAQQHIAIQKMALQTSGM 405
VTDIACAALNG+KMGDKTLTVRRA A+ Q K EQESIL AQQ IA+QK+ LQ + +
Sbjct: 442 VTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPALV 501
Query: 406 NTLGGGMSLFGETLAKVLCLTEMMKS 431
T KV+CLT + S
Sbjct: 502 AT-------------KVVCLTHAVSS 514
>gi|297840477|ref|XP_002888120.1| hypothetical protein ARALYDRAFT_475241 [Arabidopsis lyrata subsp.
lyrata]
gi|297333961|gb|EFH64379.1| hypothetical protein ARALYDRAFT_475241 [Arabidopsis lyrata subsp.
lyrata]
Length = 589
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/322 (69%), Positives = 256/322 (79%), Gaps = 16/322 (4%)
Query: 113 GFDMAPPAAAMLPGAAVPGQLPGVPSA--VPEMAQNMLPF-GATQLGAFPLMPVQVMTQQ 169
GFDMAPP A GQ+P VP+ +P M NM P QLGA P++PVQ MTQQ
Sbjct: 190 GFDMAPPDMLAATAVAAAGQVPSVPTTATIPGMFPNMFPMVPGQQLGALPVLPVQAMTQQ 249
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEM 229
ATRHARRVYVGGLPP ANEQ++ATFFSQVM+AIGGN+AGPGDAVVNVYINHEKKFAFVEM
Sbjct: 250 ATRHARRVYVGGLPPTANEQSVATFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEM 309
Query: 230 RTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIG 289
R+VEEASNAMALDGII EGV V+VRRPTDYNP+LAA LGP QP+PNLNLAAVGL+SG+ G
Sbjct: 310 RSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLAAVGLSSGSTG 369
Query: 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
G EGPDR+FVGGLPYYFTE QI+ELLESFG L GF+LVKDR+TGNSKGY FCVYQDP+VT
Sbjct: 370 GLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVT 429
Query: 350 DIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLG 409
DIACAALNG+KMGDKTLTVRRA Q K EQE +L AQQ IA+Q++ LQ G
Sbjct: 430 DIACAALNGIKMGDKTLTVRRAIQGVIQPKPEQEEVLLHAQQQIALQRLMLQPGG----- 484
Query: 410 GGMSLFGETLAKVLCLTEMMKS 431
T K++CLT+++ +
Sbjct: 485 --------TPTKIVCLTQVVTA 498
>gi|224134362|ref|XP_002327819.1| predicted protein [Populus trichocarpa]
gi|222836904|gb|EEE75297.1| predicted protein [Populus trichocarpa]
Length = 541
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 229/335 (68%), Positives = 262/335 (78%), Gaps = 22/335 (6%)
Query: 108 SKRRSGFDMAPPAAAMLPGAAVP------------GQLPGVPSAVPEMAQNMLPFGATQ- 154
SKR SGFDMAPP++A+LP AA GQ+ G +P M NM P G +Q
Sbjct: 123 SKRMSGFDMAPPSSAILPNAAAAAAAAAAASAAASGQIAGTTPPIPGMFPNMFPLGTSQQ 182
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
GA P+MPVQ MTQQATRHARRVYVGGLPP ANEQ++ATFFSQVM AIGGN+AGPGDAVV
Sbjct: 183 FGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVV 242
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
NVYINHEKKFAFVEMR+VEEASNAMALDGIIFEG V+VRRP+DYNP+LAA LGP QP+P
Sbjct: 243 NVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNP 302
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
NLNL+AVGLA G+ GG EGPDR+FVGGLPYYFTE+QI+ELLESFG L GFDLVKDR+TGN
Sbjct: 303 NLNLSAVGLAPGSAGGLEGPDRIFVGGLPYYFTESQIRELLESFGPLRGFDLVKDRETGN 362
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIA 394
SKGY FCVYQD +VTDIACAALNG+KMGDKTLTVRRA + Q K EQE++L AQQ IA
Sbjct: 363 SKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGTNQPKPEQENVLLHAQQQIA 422
Query: 395 IQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+Q++ LQ KV+CLT+++
Sbjct: 423 LQRLMLQPQPQQQ---------PVPTKVVCLTQVV 448
>gi|147840634|emb|CAN68321.1| hypothetical protein VITISV_032193 [Vitis vinifera]
Length = 565
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/324 (70%), Positives = 261/324 (80%), Gaps = 14/324 (4%)
Query: 109 KRRSGFDMAPPAAAMLPGAAVP-GQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMT 167
KR SGFDMAPPA+AML GAA GQ+PG +P M NM P + Q GA P+MPVQ MT
Sbjct: 164 KRVSGFDMAPPASAMLAGAAAAAGQIPGTTPTIPGMFPNMFPLASGQFGALPVMPVQAMT 223
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFV 227
QQATRHARRVYVGGL P ANEQ++ATFFSQVM+AIGGN+AGPGDAVVNVYINHEKKFAFV
Sbjct: 224 QQATRHARRVYVGGLSPTANEQSVATFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFV 283
Query: 228 EMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGA 287
EMR+VEEASNAMALDGIIFEG V+VRRP+DYNP+LAA LGP QP+PNLNLAAVGL G+
Sbjct: 284 EMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGS 343
Query: 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
GG EGPDR+FVGGLPYYFTE QI+ELLESFG L GFDLVKDR+TGNSKGY FCVYQD +
Sbjct: 344 AGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLS 403
Query: 348 VTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNT 407
VTDIACAALNG+KMGDKTLTVRRA + Q K EQE++L AQQ IA+Q++ Q + T
Sbjct: 404 VTDIACAALNGIKMGDKTLTVRRANQGASQPKPEQENVLLHAQQQIALQRLMFQPGALAT 463
Query: 408 LGGGMSLFGETLAKVLCLTEMMKS 431
KV+CLT+++ +
Sbjct: 464 -------------KVVCLTQVVNA 474
>gi|338762830|gb|AEI98617.1| hypothetical protein 111O18.4 [Coffea canephora]
Length = 570
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 233/354 (65%), Positives = 264/354 (74%), Gaps = 19/354 (5%)
Query: 78 RRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPAAAMLPGAAVPGQLPGVP 137
+RHR RSR ++ KR SGFDMAPP ++ GA Q+ G
Sbjct: 146 QRHRSRSREGRAEHRSRSRSRSR------SKKRISGFDMAPPTNPLMTGATSLPQVTGAA 199
Query: 138 SAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQ 197
AVP + NM QLGA P+MPVQ MTQQATRHARRVYVGGLPP ANEQ++ATFFS
Sbjct: 200 PAVPGVFPNMFSLPTGQLGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSH 259
Query: 198 VMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPT 257
VM+AIGGN+AGPGDAVVNVYINHEKKFAFVEMR+VEEASNAMALDGIIFEG V+VRRP+
Sbjct: 260 VMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPS 319
Query: 258 DYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLES 317
DYNP+LAA LGP QP+PNLNLAAVGL G+ GG EGPDR+FVGGLPYYFTE QI+ELLES
Sbjct: 320 DYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEGQIRELLES 379
Query: 318 FGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQ 377
FG L GFDLVKDR+TGNSKGY FCVYQD +VTDIACAALNG+KMGDKTLTVRRA Q
Sbjct: 380 FGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGVTQ 439
Query: 378 SKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMMKS 431
K EQES+L AQQ IA+QK+ LQ + T KVLCLT+++ +
Sbjct: 440 PKPEQESVLLHAQQQIALQKLMLQPGTLAT-------------KVLCLTQVVSA 480
>gi|359476715|ref|XP_002271463.2| PREDICTED: splicing factor U2af large subunit B-like [Vitis
vinifera]
Length = 568
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/327 (70%), Positives = 261/327 (79%), Gaps = 17/327 (5%)
Query: 109 KRRSGFDMAPPAAAMLPGAA----VPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQ 164
KR SGFDMAPPA+AML GAA GQ+PG +P M NM P + Q GA P+MPVQ
Sbjct: 164 KRVSGFDMAPPASAMLAGAAAAADFTGQIPGTTPTIPGMFPNMFPLASGQFGALPVMPVQ 223
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF 224
MTQQATRHARRVYVGGL P ANEQ++ATFFSQVM+AIGGN+AGPGDAVVNVYINHEKKF
Sbjct: 224 AMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMSAIGGNTAGPGDAVVNVYINHEKKF 283
Query: 225 AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLA 284
AFVEMR+VEEASNAMALDGIIFEG V+VRRP+DYNP+LAA LGP QP+PNLNLAAVGL
Sbjct: 284 AFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLT 343
Query: 285 SGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQ 344
G+ GG EGPDR+FVGGLPYYFTE QI+ELLESFG L GFDLVKDR+TGNSKGY FCVYQ
Sbjct: 344 PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQ 403
Query: 345 DPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSG 404
D +VTDIACAALNG+KMGDKTLTVRRA + Q K EQE++L AQQ IA+Q++ Q
Sbjct: 404 DLSVTDIACAALNGIKMGDKTLTVRRANQGASQPKPEQENVLLHAQQQIALQRLMFQPGA 463
Query: 405 MNTLGGGMSLFGETLAKVLCLTEMMKS 431
+ T KV+CLT+++ +
Sbjct: 464 LAT-------------KVVCLTQVVNA 477
>gi|30696485|ref|NP_176287.3| Splicing factor U2af large subunit B [Arabidopsis thaliana]
gi|209572798|sp|Q8L716.2|U2A2B_ARATH RecName: Full=Splicing factor U2af large subunit B; AltName:
Full=U2 auxiliary factor 65 kDa subunit B; AltName:
Full=U2 small nuclear ribonucleoprotein auxiliary factor
large subunit B; Short=U2 snRNP auxiliary factor large
subunit B
gi|332195625|gb|AEE33746.1| Splicing factor U2af large subunit B [Arabidopsis thaliana]
Length = 589
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 222/322 (68%), Positives = 255/322 (79%), Gaps = 16/322 (4%)
Query: 113 GFDMAPPAAAMLPGAAVPGQLPGVPSA--VPEMAQNMLPF-GATQLGAFPLMPVQVMTQQ 169
GFDMAPP A GQ+P VP+ +P M NM P QLGA P++PVQ MTQQ
Sbjct: 190 GFDMAPPDMLAATAVAAAGQVPSVPTTATIPGMFSNMFPMVPGQQLGALPVLPVQAMTQQ 249
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEM 229
ATRHARRVYVGGLPP ANEQ+++TFFSQVM+AIGGN+AGPGDAVVNVYINHEKKFAFVEM
Sbjct: 250 ATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEM 309
Query: 230 RTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIG 289
R+VEEASNAMALDGII EGV V+VRRPTDYNP+LAA LGP QP+PNLNL AVGL+SG+ G
Sbjct: 310 RSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGSTG 369
Query: 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
G EGPDR+FVGGLPYYFTE QI+ELLESFG L GF+LVKDR+TGNSKGY FCVYQDP+VT
Sbjct: 370 GLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVT 429
Query: 350 DIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLG 409
DIACAALNG+KMGDKTLTVRRA + Q K EQE +L AQQ IA+Q++ Q G
Sbjct: 430 DIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGG----- 484
Query: 410 GGMSLFGETLAKVLCLTEMMKS 431
T K++CLT+++ +
Sbjct: 485 --------TPTKIVCLTQVVTA 498
>gi|357455537|ref|XP_003598049.1| Splicing factor U2af large subunit B [Medicago truncatula]
gi|355487097|gb|AES68300.1| Splicing factor U2af large subunit B [Medicago truncatula]
Length = 627
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/318 (70%), Positives = 252/318 (79%), Gaps = 16/318 (5%)
Query: 112 SGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQ-LGAFPLMPVQVMTQQA 170
SGFDMAPP +A+L V GQ+ G A+P M NM P Q A P++PVQ MTQQA
Sbjct: 224 SGFDMAPPTSAILGATGVAGQITGASPAIPGMFPNMFPLPTNQPFSALPVLPVQAMTQQA 283
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
TRHARRVYVGGL P ANEQ++ATFFSQVM IGGN+AGPGDAVVNVYINH+KKFAFVEMR
Sbjct: 284 TRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMR 343
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
+VEEASNAMALDGIIFEG V+VRRPTDYNP+LAAALGP QP+PNLNL VGL+ G+ GG
Sbjct: 344 SVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPGSAGG 403
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
+GPDR+FVGG+PYYFTETQI+ELLE+FG L GFDLVKDR+TGNSKGY FCVYQD AVTD
Sbjct: 404 LDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTD 463
Query: 351 IACAALNGLKMGDKTLTVRRATASSG--QSKTEQESILAQAQQHIAIQKMALQTSGMNTL 408
IACAALNG+KMGDKTLTVRRA ++ Q K EQESIL AQQ IA+QK+ LQ + + T
Sbjct: 464 IACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQPALVAT- 522
Query: 409 GGGMSLFGETLAKVLCLT 426
KVLCLT
Sbjct: 523 ------------KVLCLT 528
>gi|255568277|ref|XP_002525113.1| splicing factor u2af large subunit, putative [Ricinus communis]
gi|223535572|gb|EEF37240.1| splicing factor u2af large subunit, putative [Ricinus communis]
Length = 549
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/324 (69%), Positives = 254/324 (78%), Gaps = 20/324 (6%)
Query: 113 GFDMAPPAAAMLPGAAVP----GQLPGVPSAVPEMAQNMLPFGA-TQLGAFPLMPVQVMT 167
GFDMAPP +AML GAA GQ+PG A+P M NM P G Q G P+MPVQ MT
Sbjct: 189 GFDMAPPPSAMLTGAAAVAAAAGQIPGTAPAIPGMFPNMFPLGTGQQFGTLPVMPVQAMT 248
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFV 227
QQATRHARRVYVGGLPP ANEQ++ATFFS VM AIGGN+AGPGDAVVNVYINHEKKFAFV
Sbjct: 249 QQATRHARRVYVGGLPPTANEQSVATFFSHVMAAIGGNTAGPGDAVVNVYINHEKKFAFV 308
Query: 228 EMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGA 287
EMR+VEEASNAMALDGIIFEG V+VRRP+DYNP+LAA LGP QP+PNLNL AVGL G+
Sbjct: 309 EMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLGAVGLTPGS 368
Query: 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
GG EGPDR+FVGGLPYYFTE QI+ELLESFG L GFDLVKDR+TGNSKGY FCVYQD +
Sbjct: 369 AGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLS 428
Query: 348 VTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNT 407
VTDIACAALNG+KMGDKTLTVRRA + Q K EQE++L AQQ IA+Q++ LQ
Sbjct: 429 VTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQETVLLHAQQQIALQRLMLQP----- 483
Query: 408 LGGGMSLFGETLAKVLCLTEMMKS 431
KV+CLT+++ +
Sbjct: 484 ----------VPTKVVCLTQVVTA 497
>gi|357455533|ref|XP_003598047.1| Splicing factor U2af large subunit B [Medicago truncatula]
gi|355487095|gb|AES68298.1| Splicing factor U2af large subunit B [Medicago truncatula]
Length = 626
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/320 (69%), Positives = 253/320 (79%), Gaps = 18/320 (5%)
Query: 112 SGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQL---GAFPLMPVQVMTQ 168
SGFDMAPP +A+L V GQ+ G A+P M NM P Q+ A P++PVQ MTQ
Sbjct: 224 SGFDMAPPTSAILGATGVAGQITGASPAIPGMFPNMFPLPTNQVQPFSALPVLPVQAMTQ 283
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVE 228
QATRHARRVYVGGL P ANEQ++ATFFSQVM IGGN+AGPGDAVVNVYINH+KKFAFVE
Sbjct: 284 QATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVE 343
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
MR+VEEASNAMALDGIIFEG V+VRRPTDYNP+LAAALGP QP+PNLNL VGL+ G+
Sbjct: 344 MRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPGSA 403
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GG +GPDR+FVGG+PYYFTETQI+ELLE+FG L GFDLVKDR+TGNSKGY FCVYQD AV
Sbjct: 404 GGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAV 463
Query: 349 TDIACAALNGLKMGDKTLTVRRATASSG--QSKTEQESILAQAQQHIAIQKMALQTSGMN 406
TDIACAALNG+KMGDKTLTVRRA ++ Q K EQESIL AQQ IA+QK+ LQ + +
Sbjct: 464 TDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQPALVA 523
Query: 407 TLGGGMSLFGETLAKVLCLT 426
T KVLCLT
Sbjct: 524 T-------------KVLCLT 530
>gi|357455535|ref|XP_003598048.1| Splicing factor U2af large subunit B [Medicago truncatula]
gi|355487096|gb|AES68299.1| Splicing factor U2af large subunit B [Medicago truncatula]
Length = 629
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/320 (69%), Positives = 253/320 (79%), Gaps = 18/320 (5%)
Query: 112 SGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQL---GAFPLMPVQVMTQ 168
SGFDMAPP +A+L V GQ+ G A+P M NM P Q+ A P++PVQ MTQ
Sbjct: 224 SGFDMAPPTSAILGATGVAGQITGASPAIPGMFPNMFPLPTNQVQPFSALPVLPVQAMTQ 283
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVE 228
QATRHARRVYVGGL P ANEQ++ATFFSQVM IGGN+AGPGDAVVNVYINH+KKFAFVE
Sbjct: 284 QATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVE 343
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
MR+VEEASNAMALDGIIFEG V+VRRPTDYNP+LAAALGP QP+PNLNL VGL+ G+
Sbjct: 344 MRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPGSA 403
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GG +GPDR+FVGG+PYYFTETQI+ELLE+FG L GFDLVKDR+TGNSKGY FCVYQD AV
Sbjct: 404 GGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAV 463
Query: 349 TDIACAALNGLKMGDKTLTVRRATASSG--QSKTEQESILAQAQQHIAIQKMALQTSGMN 406
TDIACAALNG+KMGDKTLTVRRA ++ Q K EQESIL AQQ IA+QK+ LQ + +
Sbjct: 464 TDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQPALVA 523
Query: 407 TLGGGMSLFGETLAKVLCLT 426
T KVLCLT
Sbjct: 524 T-------------KVLCLT 530
>gi|168021052|ref|XP_001763056.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685868|gb|EDQ72261.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 503
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 227/324 (70%), Positives = 260/324 (80%), Gaps = 12/324 (3%)
Query: 108 SKRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQ-LGAFPLMPVQVM 166
+++SGFDMAPP AA++ GAA+ GQ+PG+ +P + M PFG TQ G P MP Q M
Sbjct: 98 CRKQSGFDMAPPGAAVVSGAALAGQIPGIAQPMPGVYPGMFPFGGTQQFGGIPGMPAQAM 157
Query: 167 TQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAF 226
TQQATRHARRVYVGGLPPLANEQ IAT+FSQVM A+GGN+AGPGDAVVNVYIN EKKFAF
Sbjct: 158 TQQATRHARRVYVGGLPPLANEQTIATYFSQVMAAVGGNTAGPGDAVVNVYINQEKKFAF 217
Query: 227 VEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASG 286
VEMRTVEEASNAMALDGI+FEGV+VRVRRP+DYNP++AA LGP QPSP+LNLAAVGL G
Sbjct: 218 VEMRTVEEASNAMALDGIMFEGVSVRVRRPSDYNPSMAATLGPSQPSPHLNLAAVGLTPG 277
Query: 287 -AIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQD 345
A GGA+GPDR+FVGGLPYY TE QIKELLESFG L GFDLVKDRDTGNSKGYGFCVYQD
Sbjct: 278 NAAGGADGPDRIFVGGLPYYLTEIQIKELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQD 337
Query: 346 PAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGM 405
P+V DIACA LNG+KM DKTL VRRATA + K +Q ++LA AQQ IAIQ L S M
Sbjct: 338 PSVVDIACATLNGMKMDDKTLNVRRATARLARPKPDQANVLAHAQQQIAIQ--VLVYSWM 395
Query: 406 NTLGGGMSLFGETLAKVLCLTEMM 429
+ + ET V+ LT+++
Sbjct: 396 SPV--------ETPTNVVALTQVV 411
>gi|22655131|gb|AAM98156.1| putative U2 snRNP auxiliary factor [Arabidopsis thaliana]
Length = 589
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 221/322 (68%), Positives = 254/322 (78%), Gaps = 16/322 (4%)
Query: 113 GFDMAPPAAAMLPGAAVPGQLPGVPSA--VPEMAQNMLPF-GATQLGAFPLMPVQVMTQQ 169
GFDMAPP A GQ+P VP+ +P M NM P QLGA P++PVQ MTQQ
Sbjct: 190 GFDMAPPDMLAATAVAAAGQVPSVPTTATIPGMFSNMFPMVPGQQLGALPVLPVQAMTQQ 249
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEM 229
ATRHA RVYVGGLPP ANEQ+++TFFSQVM+AIGGN+AGPGDAVVNVYINHEKKFAFVEM
Sbjct: 250 ATRHAPRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEM 309
Query: 230 RTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIG 289
R+VEEASNAMALDGII EGV V+VRRPTDYNP+LAA LGP QP+PNLNL AVGL+SG+ G
Sbjct: 310 RSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGSTG 369
Query: 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
G EGPDR+FVGGLPYYFTE QI+ELLESFG L GF+LVKDR+TGNSKGY FCVYQDP+VT
Sbjct: 370 GLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVT 429
Query: 350 DIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLG 409
DIACAALNG+KMGDKTLTVRRA + Q K EQE +L AQQ IA+Q++ Q G
Sbjct: 430 DIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGG----- 484
Query: 410 GGMSLFGETLAKVLCLTEMMKS 431
T K++CLT+++ +
Sbjct: 485 --------TPTKIVCLTQVVTA 498
>gi|12323333|gb|AAG51641.1|AC018908_7 putative U2 snRNP auxiliary factor; 19096-22891 [Arabidopsis
thaliana]
Length = 568
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/323 (69%), Positives = 257/323 (79%), Gaps = 17/323 (5%)
Query: 113 GFDMAPP-AAAMLPGAAVPGQLPGVPSA--VPEMAQNMLPF-GATQLGAFPLMPVQVMTQ 168
GFDMAPP A AA GQ+P VP+ +P M NM P QLGA P++PVQ MTQ
Sbjct: 168 GFDMAPPDMLAATAVAAAAGQVPSVPTTATIPGMFSNMFPMVPGQQLGALPVLPVQAMTQ 227
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVE 228
QATRHARRVYVGGLPP ANEQ+++TFFSQVM+AIGGN+AGPGDAVVNVYINHEKKFAFVE
Sbjct: 228 QATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVE 287
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
MR+VEEASNAMALDGII EGV V+VRRPTDYNP+LAA LGP QP+PNLNL AVGL+SG+
Sbjct: 288 MRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGST 347
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GG EGPDR+FVGGLPYYFTE QI+ELLESFG L GF+LVKDR+TGNSKGY FCVYQDP+V
Sbjct: 348 GGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSV 407
Query: 349 TDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTL 408
TDIACAALNG+KMGDKTLTVRRA + Q K EQE +L AQQ IA+Q++ Q G
Sbjct: 408 TDIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGG---- 463
Query: 409 GGGMSLFGETLAKVLCLTEMMKS 431
T K++CLT+++ +
Sbjct: 464 ---------TPTKIVCLTQVVTA 477
>gi|168056046|ref|XP_001780033.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668531|gb|EDQ55136.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 536
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 222/299 (74%), Positives = 250/299 (83%), Gaps = 7/299 (2%)
Query: 110 RRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQ 169
+ SGFDMAPP ++PGAAVPGQ+ G+P +P + +M PFG Q G P MP Q MTQQ
Sbjct: 131 KTSGFDMAPPGGTIVPGAAVPGQISGMPPQMPGVFPSMFPFGGAQFGGLPGMPAQAMTQQ 190
Query: 170 -ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVE 228
ATRHARRVYVGGLPP+ANEQ IAT+FSQVM A+GGN+AGPGDAVVNVYIN EKKFAFVE
Sbjct: 191 QATRHARRVYVGGLPPMANEQTIATYFSQVMAAVGGNTAGPGDAVVNVYINQEKKFAFVE 250
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
MRTVEEASNAM+LDGIIFEGV+VRVRRP+DYNP++AA LGP QPSP+LNLAAVGL GA
Sbjct: 251 MRTVEEASNAMSLDGIIFEGVSVRVRRPSDYNPSMAATLGPSQPSPHLNLAAVGLTPGAA 310
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GGA+GPDR+FVGGLPYY TE QIKELLESFG L GFDLVKDRDTGNSKGYGFCVYQDP+V
Sbjct: 311 GGADGPDRIFVGGLPYYLTEPQIKELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDPSV 370
Query: 349 -TDIACAALNGLKMGDKTLTVRRATA--SSGQSKTEQESILAQAQQHIAIQ---KMALQ 401
TD+A AALNGLKMGDKTL+VRRA+A GQ K +Q ++L AQQ IA+Q KM L
Sbjct: 371 TTDVAIAALNGLKMGDKTLSVRRASARYGIGQPKPDQANVLIHAQQQIALQVTLKMLLH 429
>gi|297798226|ref|XP_002866997.1| hypothetical protein ARALYDRAFT_490965 [Arabidopsis lyrata subsp.
lyrata]
gi|297312833|gb|EFH43256.1| hypothetical protein ARALYDRAFT_490965 [Arabidopsis lyrata subsp.
lyrata]
Length = 567
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 256/446 (57%), Positives = 292/446 (65%), Gaps = 64/446 (14%)
Query: 35 RHHRDFKSGGDDRRRDKNYKYDREGIRDHDRTDRHRDYNRDKER---RHRHRSRSHSSDR 91
R H S DR R+K DRE + R R RD + KER + R R R H S R
Sbjct: 42 RDHERETSRSKDREREKGRDRDRERDSEVSRRSRDRDGEKGKERSREKDRDRERHHRSSR 101
Query: 92 FRNRSKSLSPSRS-------------------------------------------PSKS 108
R+ S+ S R PSKS
Sbjct: 102 HRDHSRDRSERRERGGRDDDDYRRSRDRDHDRRRDDRGGRRIRRSRSRSKDRSERSPSKS 161
Query: 109 -KRRSGFDMAPPAAAMLPGAA-VPGQLPGVPSAVPE--MAQNMLPFGATQ-LGAFPLMPV 163
KR SGFDMAPPA+AML A V GQ+P P +P M NM P Q G +MP+
Sbjct: 162 NKRVSGFDMAPPASAMLAAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPI 221
Query: 164 QVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK 223
Q MTQQATRHARRVYVGGL P ANEQ++ATFFSQVM A+GGN+AGPGDAVVNVYINHEKK
Sbjct: 222 QAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKK 281
Query: 224 FAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGL 283
FAFVEMR+VEEASNAM+LDGIIFEG V+VRRP+DYNP+LAA LGP QPSP+LNLAAVGL
Sbjct: 282 FAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGL 341
Query: 284 ASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343
GA GG EGPDR+FVGGLPYYFTE+Q++ELLESFG L GFDLVKDR+TGNSKGY FCVY
Sbjct: 342 TPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGALKGFDLVKDRETGNSKGYAFCVY 401
Query: 344 QDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTS 403
QD +VTDIACAALNG+KMGDKTLTVRRA + Q K EQES+L AQQ IA Q++ LQ
Sbjct: 402 QDLSVTDIACAALNGIKMGDKTLTVRRANQGTMQPKPEQESVLLHAQQQIAFQRIMLQPG 461
Query: 404 GMNTLGGGMSLFGETLAKVLCLTEMM 429
M T V+CLT+++
Sbjct: 462 VMATT-------------VVCLTQVV 474
>gi|302816055|ref|XP_002989707.1| hypothetical protein SELMODRAFT_160385 [Selaginella moellendorffii]
gi|300142484|gb|EFJ09184.1| hypothetical protein SELMODRAFT_160385 [Selaginella moellendorffii]
Length = 421
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 239/326 (73%), Positives = 267/326 (81%), Gaps = 15/326 (4%)
Query: 116 MAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQ-----LGAFPLMPVQVMTQQA 170
MAPP AA++ G PGQLPG+ VP + +M PF TQ P MP Q MTQQA
Sbjct: 1 MAPPGAAVVTGT-TPGQLPGITQPVPGVF-SMFPFAGTQARLLFFAGLPTMPAQAMTQQA 58
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
TRHARRVYVGGLPPLANEQ IATFFSQVM+AIGGN+AGPGDAVVNVYIN EKKFAFVEMR
Sbjct: 59 TRHARRVYVGGLPPLANEQTIATFFSQVMSAIGGNTAGPGDAVVNVYINQEKKFAFVEMR 118
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
TVEEASNAMALDGIIFEGV+VRVRRP+DYNP++AA LGP QPSP+LNLAAVGL GA GG
Sbjct: 119 TVEEASNAMALDGIIFEGVSVRVRRPSDYNPSMAATLGPSQPSPHLNLAAVGLTPGAAGG 178
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
A+GPDR+FVGGLPYY TE QIKELLESFG L GFDLVKDRDTGNSKGYGFCVYQDPAVTD
Sbjct: 179 ADGPDRIFVGGLPYYLTEGQIKELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDPAVTD 238
Query: 351 IACAALNGLKMGDKTLTVRRATAS--SGQSKTEQESILAQAQQHIAIQKMALQTSG---- 404
+ACAALNGLKMGDKTLTVRRATAS SGQ K +Q ++LAQAQQ IA+QK+ALQ +
Sbjct: 239 VACAALNGLKMGDKTLTVRRATASVHSGQPKPDQANVLAQAQQQIALQKLALQGAPYYNM 298
Query: 405 -MNTLGGGMSLFGETLAKVLCLTEMM 429
M + GM++ ET KV+CL +++
Sbjct: 299 MMPGVDNGMTM-PETPTKVVCLKQVV 323
>gi|334187224|ref|NP_001190937.1| Splicing factor U2af large subunit A [Arabidopsis thaliana]
gi|332661290|gb|AEE86690.1| Splicing factor U2af large subunit A [Arabidopsis thaliana]
Length = 551
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 247/430 (57%), Positives = 285/430 (66%), Gaps = 48/430 (11%)
Query: 35 RHHRDFKSGGDDRRRDKNYKYDREGIRDHDRTDRHRDYNRDKERRHR----HRSRSHSSD 90
R H S DR R+K DRE + R R RD + KER HR R H S
Sbjct: 42 RDHERETSRSKDREREKGRDKDRERDSEVSRRSRDRDGEKSKERSRDKDRDHRERHHRSS 101
Query: 91 RFRNRSKSLSPSRSPSK---------------------------SKRRSGFDMAPPAAAM 123
R R+ S+ R +R SGFDMAPPA+AM
Sbjct: 102 RHRDHSRERGERRERGGGRRSRRSRSRSKDRSERRTRSRSPSKSKQRVSGFDMAPPASAM 161
Query: 124 LPGAA-VPGQLPGVPSAVPE--MAQNMLPFGATQ-LGAFPLMPVQVMTQQATRHARRVYV 179
L A V GQ+P P +P M NM P Q G +MP+Q MTQQATRHARRVYV
Sbjct: 162 LAAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQQATRHARRVYV 221
Query: 180 GGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM 239
GGL P ANEQ++ATFFSQVM A+GGN+AGPGDAVVNVYINHEKKFAFVEMR+VEEASNAM
Sbjct: 222 GGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM 281
Query: 240 ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFV 299
+LDGIIFEG V+VRRP+DYNP+LAA LGP QPSP+LNLAAVGL GA GG EGPDR+FV
Sbjct: 282 SLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASGGLEGPDRIFV 341
Query: 300 GGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL 359
GGLPYYFTE+Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQD +VTDIACAALNG+
Sbjct: 342 GGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGI 401
Query: 360 KMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETL 419
KMGDKTLTVRRA + K EQE++L AQQ IA Q++ LQ + T
Sbjct: 402 KMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGAVATT----------- 450
Query: 420 AKVLCLTEMM 429
V+CLT+++
Sbjct: 451 --VVCLTQVV 458
>gi|297735185|emb|CBI17547.3| unnamed protein product [Vitis vinifera]
Length = 393
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/301 (70%), Positives = 243/301 (80%), Gaps = 13/301 (4%)
Query: 131 GQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQA 190
GQ+PG +P M NM P + Q GA P+MPVQ MTQQATRHARRVYVGGL P ANEQ+
Sbjct: 15 GQIPGTTPTIPGMFPNMFPLASGQFGALPVMPVQAMTQQATRHARRVYVGGLSPTANEQS 74
Query: 191 IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250
+ATFFSQVM+AIGGN+AGPGDAVVNVYINHEKKFAFVEMR+VEEASNAMALDGIIFEG
Sbjct: 75 VATFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAP 134
Query: 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQ 310
V+VRRP+DYNP+LAA LGP QP+PNLNLAAVGL G+ GG EGPDR+FVGGLPYYFTE Q
Sbjct: 135 VKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQ 194
Query: 311 IKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370
I+ELLESFG L GFDLVKDR+TGNSKGY FCVYQD +VTDIACAALNG+KMGDKTLTVRR
Sbjct: 195 IRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRR 254
Query: 371 ATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMMK 430
A + Q K EQE++L AQQ IA+Q++ Q + T KV+CLT+++
Sbjct: 255 ANQGASQPKPEQENVLLHAQQQIALQRLMFQPGALAT-------------KVVCLTQVVN 301
Query: 431 S 431
+
Sbjct: 302 A 302
>gi|168026451|ref|XP_001765745.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682922|gb|EDQ69336.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 491
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 233/318 (73%), Positives = 261/318 (82%), Gaps = 15/318 (4%)
Query: 113 GFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQ-LGAFPLMPVQVMTQQAT 171
GFDMAPP AA++ GAAVPGQLPG+ +P + M PFG TQ G P MP Q MTQQAT
Sbjct: 96 GFDMAPPGAAVIAGAAVPGQLPGMAQPMPGVFPGMFPFGGTQQFGGIPGMPAQAMTQQAT 155
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRT 231
RHARRVYVGGLPP+ANEQ IAT+FSQVM A+GGN+AGPGDAVVNVYIN EKKFAFVEMRT
Sbjct: 156 RHARRVYVGGLPPMANEQTIATYFSQVMAAVGGNTAGPGDAVVNVYINQEKKFAFVEMRT 215
Query: 232 VEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGA 291
VEEASNAMALDGI+FEGV+VRVRRP+DYNP++AA LGP QPSP+LNLAAVGL GA GGA
Sbjct: 216 VEEASNAMALDGIMFEGVSVRVRRPSDYNPSMAATLGPSQPSPHLNLAAVGLTPGAAGGA 275
Query: 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDI 351
+GPDR+FVGGLPYY TE QIKELLESFG L GFDLVKDRDTGNSKGYGFCVYQDPAVTD+
Sbjct: 276 DGPDRIFVGGLPYYLTEIQIKELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDPAVTDV 335
Query: 352 ACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGG 411
A AALNGLKMGDKTL+VRRA+A SGQ K +Q ++LA AQQ IAIQ M+ L
Sbjct: 336 AIAALNGLKMGDKTLSVRRASA-SGQPKPDQANVLAHAQQQIAIQVFW-----MSPL--- 386
Query: 412 MSLFGETLAKVLCLTEMM 429
ET KV+ LT+++
Sbjct: 387 -----ETSTKVVALTQVV 399
>gi|224094725|ref|XP_002310209.1| predicted protein [Populus trichocarpa]
gi|222853112|gb|EEE90659.1| predicted protein [Populus trichocarpa]
Length = 394
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 212/296 (71%), Positives = 240/296 (81%), Gaps = 14/296 (4%)
Query: 135 GVPSAVPEMAQNMLPFGA-TQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIAT 193
G +P M NM P G Q GA P+MPVQ MTQQATRHARRVYVGGLPP+ANEQ++AT
Sbjct: 19 GTTPPIPGMFPNMFPLGTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPIANEQSVAT 78
Query: 194 FFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRV 253
FFSQVM AIGGN+AGPGDAVVNVYINHEKKFAFVEMR+VEEASNAMALDGIIFEG V+V
Sbjct: 79 FFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKV 138
Query: 254 RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKE 313
RRP+DYNP+LAA LGP QP+PNLNLAAVGL G+ GG EGPDR+FVGGLPYYFTE QI+E
Sbjct: 139 RRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRE 198
Query: 314 LLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
LLESFG L GFDLVKDR+TGNSKGY FCVYQD +VTDIACAALNG+KMGDKTLTVRRA
Sbjct: 199 LLESFGALRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ 258
Query: 374 SSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ Q K EQE++L AQQ IA+Q++ LQ + T KV+CLT+++
Sbjct: 259 GTNQPKPEQENVLLHAQQQIALQRLMLQPPPVVT-------------KVVCLTQVV 301
>gi|302820212|ref|XP_002991774.1| hypothetical protein SELMODRAFT_161898 [Selaginella moellendorffii]
gi|300140455|gb|EFJ07178.1| hypothetical protein SELMODRAFT_161898 [Selaginella moellendorffii]
Length = 420
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 235/325 (72%), Positives = 261/325 (80%), Gaps = 14/325 (4%)
Query: 116 MAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQ-----LGAFPLMPVQVMTQQA 170
MAPP AA++ G PGQLPG+ VP + +M PF TQ P MP Q MTQQA
Sbjct: 1 MAPPGAAVVTGT-TPGQLPGITQPVPGVF-SMFPFAGTQASLLFFAGLPTMPAQAMTQQA 58
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
TRHARRVYVGGLPPLANEQ IATFFSQVM+AIGGN+AGPGDAVVNVYIN EKKFAFVEMR
Sbjct: 59 TRHARRVYVGGLPPLANEQTIATFFSQVMSAIGGNTAGPGDAVVNVYINQEKKFAFVEMR 118
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
TVEEASNAMALDGIIFEGV+VRVRRP+DYNP++AA LGP QPSP+LNLAAVGL GA GG
Sbjct: 119 TVEEASNAMALDGIIFEGVSVRVRRPSDYNPSMAATLGPSQPSPHLNLAAVGLTPGAAGG 178
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
A+GPDR+FVGGLPYY TE QIKELLESFG L GFDLVKDRDTGNSKGYGFCVYQDPAVTD
Sbjct: 179 ADGPDRIFVGGLPYYLTEGQIKELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDPAVTD 238
Query: 351 IACAALNGLKMGDKTLTVRRATAS--SGQSKTEQESILAQAQQHIAIQKMALQTSGMNTL 408
+ACAALNGLKMGDKTLTVRRATAS SGQ K +Q ++LAQAQQ IA+Q N +
Sbjct: 239 VACAALNGLKMGDKTLTVRRATASVHSGQPKPDQANVLAQAQQQIALQLALQGAPYYNMM 298
Query: 409 ----GGGMSLFGETLAKVLCLTEMM 429
GM++ ET KV+CL +++
Sbjct: 299 MPGVDNGMTM-PETPTKVVCLKQVV 322
>gi|42573197|ref|NP_974695.1| Splicing factor U2af large subunit A [Arabidopsis thaliana]
gi|332661288|gb|AEE86688.1| Splicing factor U2af large subunit A [Arabidopsis thaliana]
Length = 565
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/325 (68%), Positives = 254/325 (78%), Gaps = 17/325 (5%)
Query: 109 KRRSGFDMAPPAAAMLPGAA-VPGQLPGVPSAVPE--MAQNMLPFGATQ-LGAFPLMPVQ 164
+R SGFDMAPPA+AML A V GQ+P P +P M NM P Q G +MP+Q
Sbjct: 169 QRVSGFDMAPPASAMLAAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQ 228
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF 224
MTQQATRHARRVYVGGL P ANEQ++ATFFSQVM A+GGN+AGPGDAVVNVYINHEKKF
Sbjct: 229 AMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKF 288
Query: 225 AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLA 284
AFVEMR+VEEASNAM+LDGIIFEG V+VRRP+DYNP+LAA LGP QPSP+LNLAAVGL
Sbjct: 289 AFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLT 348
Query: 285 SGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQ 344
GA GG EGPDR+FVGGLPYYFTE+Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQ
Sbjct: 349 PGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ 408
Query: 345 DPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSG 404
D +VTDIACAALNG+KMGDKTLTVRRA + K EQE++L AQQ IA Q++ LQ
Sbjct: 409 DLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGA 468
Query: 405 MNTLGGGMSLFGETLAKVLCLTEMM 429
+ T V+CLT+++
Sbjct: 469 VAT-------------TVVCLTQVV 480
>gi|30690730|ref|NP_849509.1| Splicing factor U2af large subunit A [Arabidopsis thaliana]
gi|19310597|gb|AAL85029.1| putative splicing factor [Arabidopsis thaliana]
gi|332661289|gb|AEE86689.1| Splicing factor U2af large subunit A [Arabidopsis thaliana]
Length = 542
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/325 (68%), Positives = 254/325 (78%), Gaps = 17/325 (5%)
Query: 109 KRRSGFDMAPPAAAMLPGAA-VPGQLPGVPSAVPE--MAQNMLPFGATQ-LGAFPLMPVQ 164
+R SGFDMAPPA+AML A V GQ+P P +P M NM P Q G +MP+Q
Sbjct: 169 QRVSGFDMAPPASAMLAAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQ 228
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF 224
MTQQATRHARRVYVGGL P ANEQ++ATFFSQVM A+GGN+AGPGDAVVNVYINHEKKF
Sbjct: 229 AMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKF 288
Query: 225 AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLA 284
AFVEMR+VEEASNAM+LDGIIFEG V+VRRP+DYNP+LAA LGP QPSP+LNLAAVGL
Sbjct: 289 AFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLT 348
Query: 285 SGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQ 344
GA GG EGPDR+FVGGLPYYFTE+Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQ
Sbjct: 349 PGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ 408
Query: 345 DPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSG 404
D +VTDIACAALNG+KMGDKTLTVRRA + K EQE++L AQQ IA Q++ LQ
Sbjct: 409 DLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGA 468
Query: 405 MNTLGGGMSLFGETLAKVLCLTEMM 429
+ T V+CLT+++
Sbjct: 469 VAT-------------TVVCLTQVV 480
>gi|222423510|dbj|BAH19725.1| AT4G36690 [Arabidopsis thaliana]
Length = 565
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/325 (68%), Positives = 254/325 (78%), Gaps = 17/325 (5%)
Query: 109 KRRSGFDMAPPAAAMLPGAA-VPGQLPGVPSAVPE--MAQNMLPFGATQ-LGAFPLMPVQ 164
+R SGFDMAPPA+AML A V GQ+P P +P M NM P Q G +MP+Q
Sbjct: 169 QRVSGFDMAPPASAMLAAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQ 228
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF 224
MTQQATRHARRVYVGGL P ANEQ++ATFFSQVM A+GGN+AGPGDAVVNVYINHEKKF
Sbjct: 229 AMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKF 288
Query: 225 AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLA 284
AFVEMR+VEEASNAM+LDGIIFEG V+VRRP+DYNP+LAA LGP QPSP+LNLAAVGL
Sbjct: 289 AFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLT 348
Query: 285 SGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQ 344
GA GG EGPDR+FVGGLPYYFTE+Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQ
Sbjct: 349 PGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ 408
Query: 345 DPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSG 404
D +VTDIACAALNG+KMGDKTLTVRRA + K EQE++L AQQ IA Q++ LQ
Sbjct: 409 DLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGA 468
Query: 405 MNTLGGGMSLFGETLAKVLCLTEMM 429
+ T V+CLT+++
Sbjct: 469 VAT-------------TVVCLTQVV 480
>gi|15234495|ref|NP_195387.1| Splicing factor U2af large subunit A [Arabidopsis thaliana]
gi|75318082|sp|O23212.2|U2A2A_ARATH RecName: Full=Splicing factor U2af large subunit A; AltName:
Full=U2 auxiliary factor 65 kDa subunit A; AltName:
Full=U2 small nuclear ribonucleoprotein auxiliary factor
large subunit A; Short=U2 snRNP auxiliary factor large
subunit A
gi|18087531|gb|AAL58899.1|AF462805_1 At4g35590/C7A10_670 [Arabidopsis thaliana]
gi|4006898|emb|CAB16828.1| splicing factor-like protein [Arabidopsis thaliana]
gi|7270617|emb|CAB80335.1| splicing factor-like protein [Arabidopsis thaliana]
gi|23506119|gb|AAN28919.1| At4g35590/C7A10_670 [Arabidopsis thaliana]
gi|24030414|gb|AAN41365.1| putative splicing factor [Arabidopsis thaliana]
gi|332661287|gb|AEE86687.1| Splicing factor U2af large subunit A [Arabidopsis thaliana]
Length = 573
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/325 (68%), Positives = 254/325 (78%), Gaps = 17/325 (5%)
Query: 109 KRRSGFDMAPPAAAMLPGAA-VPGQLPGVPSAVPE--MAQNMLPFGATQ-LGAFPLMPVQ 164
+R SGFDMAPPA+AML A V GQ+P P +P M NM P Q G +MP+Q
Sbjct: 169 QRVSGFDMAPPASAMLAAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQ 228
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF 224
MTQQATRHARRVYVGGL P ANEQ++ATFFSQVM A+GGN+AGPGDAVVNVYINHEKKF
Sbjct: 229 AMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKF 288
Query: 225 AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLA 284
AFVEMR+VEEASNAM+LDGIIFEG V+VRRP+DYNP+LAA LGP QPSP+LNLAAVGL
Sbjct: 289 AFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLT 348
Query: 285 SGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQ 344
GA GG EGPDR+FVGGLPYYFTE+Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQ
Sbjct: 349 PGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ 408
Query: 345 DPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSG 404
D +VTDIACAALNG+KMGDKTLTVRRA + K EQE++L AQQ IA Q++ LQ
Sbjct: 409 DLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGA 468
Query: 405 MNTLGGGMSLFGETLAKVLCLTEMM 429
+ T V+CLT+++
Sbjct: 469 VATT-------------VVCLTQVV 480
>gi|122245120|sp|Q2QKB4.1|U2A2B_WHEAT RecName: Full=Splicing factor U2af large subunit B; AltName:
Full=U2 auxiliary factor 65 kDa subunit B; AltName:
Full=U2 small nuclear ribonucleoprotein auxiliary factor
large subunit B; Short=U2 snRNP auxiliary factor large
subunit B
gi|68036764|gb|AAY84880.1| U2AF large subunit [Triticum aestivum]
Length = 543
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 224/333 (67%), Positives = 259/333 (77%), Gaps = 19/333 (5%)
Query: 102 SRSPSKSKRRSGFDMAPPAAAMLP---GAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAF 158
SRS SKSKR SGFD+ P A ++LP P QLPG S++P M NMLPF Q+
Sbjct: 134 SRSHSKSKRVSGFDLGPTAQSVLPQFPTIPTPSQLPG--SSIPGMFPNMLPFADGQINPL 191
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
+ P Q MTQQATRHARRVYVGGLPP ANEQ++A +F+QVM AIGGN+AGPGDAV+NVYI
Sbjct: 192 VMQP-QAMTQQATRHARRVYVGGLPPSANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYI 250
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
NH+KKFAFVEMR+VEEASNAMALDGI+FEG V+VRRPTDYNP+LAAALGP QPS NLNL
Sbjct: 251 NHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSSNLNL 310
Query: 279 AAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
AAVGL G+ GG EGPDR+FVGGLPYYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY
Sbjct: 311 AAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGY 370
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKM 398
FCVYQD VTDIACAALNG+KMGDKTLTVRRA S Q + EQE+IL QAQQ + +QK+
Sbjct: 371 AFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGSAQPRPEQENILLQAQQQVQLQKL 430
Query: 399 ALQTSGMNTLGGGMSLFGETLAKVLCLTEMMKS 431
Q + T KV+CLT+++ +
Sbjct: 431 VYQVGALPT-------------KVVCLTQVVTA 450
>gi|357470349|ref|XP_003605459.1| Splicing factor U2af large subunit B [Medicago truncatula]
gi|355506514|gb|AES87656.1| Splicing factor U2af large subunit B [Medicago truncatula]
Length = 634
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/306 (69%), Positives = 237/306 (77%), Gaps = 27/306 (8%)
Query: 124 LPGAAVPGQLPGVPSAVPEMAQNMLPFGATQL---GAFPLMPVQVMTQQATRHARRVYVG 180
+P A+ G LP NM P GA Q+ A P+MP+Q MTQQATRHARRVYVG
Sbjct: 257 VPNPAISGVLP-----------NMFPMGANQMPQFSALPMMPIQAMTQQATRHARRVYVG 305
Query: 181 GLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA 240
GLPP ANEQ++A FFSQVM IGGN+AGPGDAVVNVYINH+KKFAFVEMR+VEEASNAMA
Sbjct: 306 GLPPTANEQSVAIFFSQVMANIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMA 365
Query: 241 LDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVG 300
LDGIIFEG V+VRRPTDYNP+LAA LGP QP+PNLNL AVGL G+ GG EGPDR+FVG
Sbjct: 366 LDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLEGPDRIFVG 425
Query: 301 GLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLK 360
GLPYYFTETQI+ELLE+FG L GFDLVKDR+TGNSKGY FCVY D AVTDIACAALNG+K
Sbjct: 426 GLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYADLAVTDIACAALNGIK 485
Query: 361 MGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLA 420
MGDKTLTVRRA + Q K EQESIL AQQ IA+QK+ Q + + T
Sbjct: 486 MGDKTLTVRRANQGTTQPKPEQESILMHAQQQIALQKLIFQPALVAT------------- 532
Query: 421 KVLCLT 426
KV+CLT
Sbjct: 533 KVVCLT 538
>gi|357156009|ref|XP_003577312.1| PREDICTED: splicing factor U2af large subunit B-like [Brachypodium
distachyon]
Length = 576
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/322 (66%), Positives = 247/322 (76%), Gaps = 17/322 (5%)
Query: 113 GFDMAPPAAAML--PGAAVPGQLPGVPSAVPEMAQNMLPFGA-TQLGAFPLMPVQVMTQQ 169
GFD P L PGA PGQLP V +P M NM F A TQ + P Q MTQQ
Sbjct: 178 GFDQGPSQGVPLVTPGA-TPGQLPAVAPLIPGMLPNMFNFTAPTQFNPLAMQP-QAMTQQ 235
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEM 229
ATRHARRVYVGGLPP ANEQ +A +F+QVM AIGGN+AGPGDAV+NVYINH+KKFAFVEM
Sbjct: 236 ATRHARRVYVGGLPPTANEQTVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEM 295
Query: 230 RTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIG 289
R+VEEASNAMALDGI+FEG V+VRRPTDYNP+LAAALGP QP+PNLNL AVGL G+ G
Sbjct: 296 RSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGAVGLTPGSAG 355
Query: 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
G EGPDR+FVGGLPYYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQD VT
Sbjct: 356 GLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVT 415
Query: 350 DIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLG 409
DIACAALNG+KMGDKTLTVRRA + Q + EQE+IL QA Q + +Q++ LQ +G
Sbjct: 416 DIACAALNGIKMGDKTLTVRRANQGASQPRPEQETILMQAHQQVQMQRLVLQ------VG 469
Query: 410 GGMSLFGETLAKVLCLTEMMKS 431
G + KV+CLT+++ +
Sbjct: 470 GALP------TKVVCLTQVVSA 485
>gi|218191627|gb|EEC74054.1| hypothetical protein OsI_09051 [Oryza sativa Indica Group]
Length = 548
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 219/323 (67%), Positives = 252/323 (78%), Gaps = 19/323 (5%)
Query: 112 SGFDMAPPAAAMLP---GAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQ 168
SGFDMAPPA A++P P Q PG +A+P M NMLP G Q + P Q MTQ
Sbjct: 151 SGFDMAPPAQAVVPQFPAIPTPSQFPG--TAIPGMFPNMLPMGVGQFNPLVIQP-QAMTQ 207
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVE 228
QATRHARRVYVGGLPP ANEQ++A +F+QVM AIGGN+AGPGDAV+NVYINH+KKFAFVE
Sbjct: 208 QATRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVE 267
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
MR+VEEASNAMALDGI+FEG V+VRRPTDYNP+LAAALGP QPSPNLNLAAVGL G+
Sbjct: 268 MRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGLTPGSA 327
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GG EGPDR+FVGGLPYYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQD V
Sbjct: 328 GGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNV 387
Query: 349 TDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTL 408
TDIACAALNG+KMGDKTLTVRRA + Q + EQESIL QAQQ + +QK+ Q + T
Sbjct: 388 TDIACAALNGIKMGDKTLTVRRANQGAAQPRPEQESILLQAQQQVQLQKLVYQVGALPT- 446
Query: 409 GGGMSLFGETLAKVLCLTEMMKS 431
KV+CLT+++ +
Sbjct: 447 ------------KVVCLTQVVSA 457
>gi|122232770|sp|Q2QZL4.2|U2A2B_ORYSJ RecName: Full=Splicing factor U2af large subunit B; AltName:
Full=U2 auxiliary factor 65 kDa subunit B; AltName:
Full=U2 small nuclear ribonucleoprotein auxiliary factor
large subunit B; Short=U2 snRNP auxiliary factor large
subunit B
gi|108864649|gb|ABA95281.2| transposon protein, putative, CACTA, En/Spm sub-class, expressed
[Oryza sativa Japonica Group]
gi|222616418|gb|EEE52550.1| hypothetical protein OsJ_34796 [Oryza sativa Japonica Group]
Length = 548
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 219/323 (67%), Positives = 252/323 (78%), Gaps = 19/323 (5%)
Query: 112 SGFDMAPPAAAMLP---GAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQ 168
SGFDMAPPA A++P P Q PG +A+P M NMLP G Q + P Q MTQ
Sbjct: 151 SGFDMAPPAQAVVPQFPAIPTPSQFPG--TAIPGMFPNMLPMGVGQFNPLVIQP-QAMTQ 207
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVE 228
QATRHARRVYVGGLPP ANEQ++A +F+QVM AIGGN+AGPGDAV+NVYINH+KKFAFVE
Sbjct: 208 QATRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVE 267
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
MR+VEEASNAMALDGI+FEG V+VRRPTDYNP+LAAALGP QPSPNLNLAAVGL G+
Sbjct: 268 MRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGLTPGSA 327
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GG EGPDR+FVGGLPYYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQD V
Sbjct: 328 GGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNV 387
Query: 349 TDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTL 408
TDIACAALNG+KMGDKTLTVRRA + Q + EQESIL QAQQ + +QK+ Q + T
Sbjct: 388 TDIACAALNGIKMGDKTLTVRRANQGAAQPRPEQESILLQAQQQVQLQKLVYQVGALPT- 446
Query: 409 GGGMSLFGETLAKVLCLTEMMKS 431
KV+CLT+++ +
Sbjct: 447 ------------KVVCLTQVVSA 457
>gi|156070782|gb|ABU45195.1| unknown [Petunia integrifolia subsp. inflata]
Length = 506
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 228/395 (57%), Positives = 270/395 (68%), Gaps = 59/395 (14%)
Query: 68 RHRDYNRDKERRHRHRSRSH-SSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPAAAMLPG 126
R R+ ++D E HRHR S +DR S+SPSKS+R SGFDMAPP +A+LPG
Sbjct: 46 RRRENDKDIEDPHRHRPGSRGKTDR----------SQSPSKSRRISGFDMAPPTSALLPG 95
Query: 127 AA-VPGQLPGVPSAVPEMAQNMLPF-----------------------------GATQLG 156
A GQ+PG ++P M NM P G Q G
Sbjct: 96 ATDAAGQVPGTNPSIPGMFSNMFPLASDQVLPQIPSYYTSNGLLIFSFLIHLVCGFFQCG 155
Query: 157 AFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV 216
FP+MP+Q MTQQATRHARRVYVGGLP ANEQ++ATFFS VM AIGGN+AGPGDAV++V
Sbjct: 156 PFPVMPIQEMTQQATRHARRVYVGGLPSSANEQSVATFFSHVMYAIGGNTAGPGDAVIDV 215
Query: 217 YINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNL 276
YINHEKKFAFVEMR+VEEASNAMALDG+IFEG VRVRRP+DYN +LAA LGP QPSPNL
Sbjct: 216 YINHEKKFAFVEMRSVEEASNAMALDGVIFEGEPVRVRRPSDYNASLAATLGPSQPSPNL 275
Query: 277 NLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSK 336
NLAAVGL G+ GG EGPD +F+GGLP YFTE QI+ELLESFG L GF+LVKDR++GNSK
Sbjct: 276 NLAAVGLTPGSSGGLEGPDCIFIGGLPDYFTEAQIRELLESFGPLRGFNLVKDRESGNSK 335
Query: 337 GYGFCVYQDPAVTDIACAALNGLK-MGDKTLTVRRATASSGQSKTEQESILAQAQQHIAI 395
G+ F VYQD +VT+IAC ALNG+K M DKTL VRRA + Q EQES+L Q I++
Sbjct: 336 GHAFFVYQDVSVTEIACGALNGIKIMHDKTLIVRRANQGTQQLNPEQESVL----QQISL 391
Query: 396 QKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMMK 430
Q++ L + T KVLCLTE ++
Sbjct: 392 QRLMLLPGALAT-------------KVLCLTEAVR 413
>gi|223950169|gb|ACN29168.1| unknown [Zea mays]
gi|413920349|gb|AFW60281.1| splicing factor U2AF subunit [Zea mays]
Length = 594
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/324 (66%), Positives = 251/324 (77%), Gaps = 17/324 (5%)
Query: 112 SGFDMAPP--AAAMLPGAAVPGQLPGVPSAVPEMA--QNMLPFGATQLGAFPLMPVQVMT 167
SGFD APP A ++ A+PGQLPG+ + +P + N+ A Q + P Q MT
Sbjct: 194 SGFDQAPPQHALPIVAAGAIPGQLPGITAPIPGVGVLPNLYNLAAGQFNPLVIQP-QAMT 252
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFV 227
QQATRHARRVYVGGLPP ANEQ +A FF+ VM AIGGN+AGPGDAV+NVYINH+KKFAFV
Sbjct: 253 QQATRHARRVYVGGLPPTANEQTVAIFFNGVMAAIGGNTAGPGDAVLNVYINHDKKFAFV 312
Query: 228 EMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGA 287
EMR+VEEASNAMALDGI+FEG V+VRRPTDYNP+LAAALGP QP+PNLNLAAVGL G+
Sbjct: 313 EMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLAAVGLTPGS 372
Query: 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
GG EGPDR+FVGGLPYYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQD
Sbjct: 373 AGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLN 432
Query: 348 VTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNT 407
VTDIACAALNG+KMGDKTLTVRRA + Q + EQESIL QAQQ + +QK+ Q
Sbjct: 433 VTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESILLQAQQQVQMQKLVYQ------ 486
Query: 408 LGGGMSLFGETLAKVLCLTEMMKS 431
+GG + KV+CLT+++ +
Sbjct: 487 VGGALP------TKVVCLTQVVTA 504
>gi|413920348|gb|AFW60280.1| hypothetical protein ZEAMMB73_339264 [Zea mays]
Length = 549
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/324 (66%), Positives = 251/324 (77%), Gaps = 17/324 (5%)
Query: 112 SGFDMAPP--AAAMLPGAAVPGQLPGVPSAVPEMA--QNMLPFGATQLGAFPLMPVQVMT 167
SGFD APP A ++ A+PGQLPG+ + +P + N+ A Q + P Q MT
Sbjct: 194 SGFDQAPPQHALPIVAAGAIPGQLPGITAPIPGVGVLPNLYNLAAGQFNPLVIQP-QAMT 252
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFV 227
QQATRHARRVYVGGLPP ANEQ +A FF+ VM AIGGN+AGPGDAV+NVYINH+KKFAFV
Sbjct: 253 QQATRHARRVYVGGLPPTANEQTVAIFFNGVMAAIGGNTAGPGDAVLNVYINHDKKFAFV 312
Query: 228 EMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGA 287
EMR+VEEASNAMALDGI+FEG V+VRRPTDYNP+LAAALGP QP+PNLNLAAVGL G+
Sbjct: 313 EMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLAAVGLTPGS 372
Query: 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
GG EGPDR+FVGGLPYYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQD
Sbjct: 373 AGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLN 432
Query: 348 VTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNT 407
VTDIACAALNG+KMGDKTLTVRRA + Q + EQESIL QAQQ + +QK+ Q
Sbjct: 433 VTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESILLQAQQQVQMQKLVYQ------ 486
Query: 408 LGGGMSLFGETLAKVLCLTEMMKS 431
+GG + KV+CLT+++ +
Sbjct: 487 VGGALP------TKVVCLTQVVTA 504
>gi|168030966|ref|XP_001767993.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680835|gb|EDQ67268.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/321 (65%), Positives = 248/321 (77%), Gaps = 26/321 (8%)
Query: 112 SGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPF-GATQLGAFPLMPVQVMTQQA 170
SGFDMAPP +LP +A+ GQ+ G+ P ++ PF G TQ+G FPL +
Sbjct: 109 SGFDMAPPGVTVLPASALSGQIAGM--GFP----SIFPFAGGTQVGPFPLH-FHAIGLSF 161
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
TRHARRVYVGGLPP+ANEQ++ATFFSQVM A+GGN+AGPGDAVVNVYIN EK+FAFVEMR
Sbjct: 162 TRHARRVYVGGLPPMANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINQEKRFAFVEMR 221
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
TVEEASNAMALDGI++EGV+VRVRRP+DYNP++AA LGP QPS +LNL AVGL GA+GG
Sbjct: 222 TVEEASNAMALDGIVYEGVSVRVRRPSDYNPSMAATLGPSQPSSHLNLTAVGLTPGALGG 281
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
A+GPDR+FVGGLPYY +E QI +LL SFG L FDLVKDRDTGNSKGYGFCVYQDP+V D
Sbjct: 282 ADGPDRIFVGGLPYYLSEEQIMDLLSSFGHLRAFDLVKDRDTGNSKGYGFCVYQDPSVMD 341
Query: 351 IACAALNGLKMGDKTLTVRRATA--SSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTL 408
IACAALNGLKMGD+TLTVRRA+A GQ K +Q +I+ QAQQ IA+Q A
Sbjct: 342 IACAALNGLKMGDRTLTVRRASARLRFGQPKPDQSNIIVQAQQQIALQVAA--------- 392
Query: 409 GGGMSLFGETLAKVLCLTEMM 429
ET KV+CL++++
Sbjct: 393 -------PETATKVICLSQVV 406
>gi|226497766|ref|NP_001152419.1| LOC100286059 [Zea mays]
gi|195656099|gb|ACG47517.1| splicing factor U2AF 65 kDa subunit [Zea mays]
Length = 596
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 213/324 (65%), Positives = 250/324 (77%), Gaps = 17/324 (5%)
Query: 112 SGFDMAPP--AAAMLPGAAVPGQLPGVPSAVPEMA--QNMLPFGATQLGAFPLMPVQVMT 167
SGFD APP A ++ A+PGQLPG+ + +P + N+ A Q + P Q MT
Sbjct: 196 SGFDQAPPQHALPIVAAGAIPGQLPGITAPIPGVGVLPNLYNLAAGQFNPLVIQP-QAMT 254
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFV 227
QQATRHARRVYVGGLPP ANEQ +A FF+ VM AIGGN+AGPGDAV+NVYINH+KKFAFV
Sbjct: 255 QQATRHARRVYVGGLPPTANEQTVAIFFNGVMAAIGGNTAGPGDAVLNVYINHDKKFAFV 314
Query: 228 EMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGA 287
EMR+VEEASNAMALDGI+FEG V+VRRPTDYNP+LAAALGP QP+PNLNLAAVGL G+
Sbjct: 315 EMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLAAVGLTPGS 374
Query: 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
GG EGPDR+FVGGLPYYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQD
Sbjct: 375 AGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLN 434
Query: 348 VTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNT 407
VTDIACAALNG+KMGDKTLTV RA + Q + EQESIL QAQQ + +QK+ Q
Sbjct: 435 VTDIACAALNGIKMGDKTLTVSRANQGASQPRPEQESILLQAQQQVQMQKLVYQ------ 488
Query: 408 LGGGMSLFGETLAKVLCLTEMMKS 431
+GG + KV+CLT+++ +
Sbjct: 489 VGGALP------TKVVCLTQVVTA 506
>gi|357438349|ref|XP_003589450.1| Splicing factor U2af large subunit B [Medicago truncatula]
gi|355478498|gb|AES59701.1| Splicing factor U2af large subunit B [Medicago truncatula]
Length = 611
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/320 (65%), Positives = 238/320 (74%), Gaps = 33/320 (10%)
Query: 112 SGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQL---GAFPLMPVQVMTQ 168
SGFDMAPP +A+L V GQ+ G A+P M NM P Q+ A P++PVQ MTQ
Sbjct: 224 SGFDMAPPTSAILGATGVAGQITGASPAIPGMFPNMFPLPTNQVQPFSALPVLPVQAMTQ 283
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVE 228
QATRHARRVYVGGL P ANEQ++ATFFSQVM IGGN+AGPGDAV
Sbjct: 284 QATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAV--------------- 328
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
MR+VEEASNAMALDGIIFEG V+VRRPTDYNP+LAAALGP QP+PNLNL VGL+ G+
Sbjct: 329 MRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPGSA 388
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GG +GPDR+FVGG+PYYFTETQI+ELLE+FG L GFDLVKDR+TGNSKGY FCVYQD AV
Sbjct: 389 GGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAV 448
Query: 349 TDIACAALNGLKMGDKTLTVRRATASSG--QSKTEQESILAQAQQHIAIQKMALQTSGMN 406
TDIACAALNG+KMGDKTLTVRRA ++ Q K EQESIL AQQ IA+QK+ LQ + +
Sbjct: 449 TDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQPALVA 508
Query: 407 TLGGGMSLFGETLAKVLCLT 426
T KVLCLT
Sbjct: 509 T-------------KVLCLT 515
>gi|242069419|ref|XP_002449986.1| hypothetical protein SORBIDRAFT_05g026740 [Sorghum bicolor]
gi|241935829|gb|EES08974.1| hypothetical protein SORBIDRAFT_05g026740 [Sorghum bicolor]
Length = 545
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 217/325 (66%), Positives = 250/325 (76%), Gaps = 22/325 (6%)
Query: 113 GFDMAPPAA--AMLPGAAVPGQLPGVPSAVPE---MAQNMLPFG-ATQLGAFPLMPVQVM 166
GFD PP A + P P QLPG +++P M NMLPFG A Q + P Q M
Sbjct: 146 GFDAPPPQAMGSPFPVIPTPSQLPG--TSLPNIGGMFPNMLPFGVAGQFNPLVIQP-QAM 202
Query: 167 TQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAF 226
TQQATRHARRVYVGGLPP ANEQ +A +F+QVM AIGGN+AGPGDAV+NVYINH+KKFAF
Sbjct: 203 TQQATRHARRVYVGGLPPSANEQTVAVYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAF 262
Query: 227 VEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASG 286
VEMR+VEEASNAMALDGI+FEG V+VRRPTDYNP+LAAALGP QPSPNLNLAAVGL +G
Sbjct: 263 VEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGLTAG 322
Query: 287 AIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDP 346
+ GG EGPDR+FVGGLPYYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQD
Sbjct: 323 STGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL 382
Query: 347 AVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMN 406
VTDIACAALNG+KMGDKTLTVRRA + Q + EQESIL QAQQ + +QK+ Q +
Sbjct: 383 TVTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESILLQAQQQVQLQKLVYQVGALP 442
Query: 407 TLGGGMSLFGETLAKVLCLTEMMKS 431
T KV+CLT+++ +
Sbjct: 443 T-------------KVVCLTQVVTA 454
>gi|122245119|sp|Q2QKB3.1|U2A2A_WHEAT RecName: Full=Splicing factor U2af large subunit A; AltName:
Full=U2 auxiliary factor 65 kDa subunit A; AltName:
Full=U2 small nuclear ribonucleoprotein auxiliary factor
large subunit A; Short=U2 snRNP auxiliary factor large
subunit A
gi|68036924|gb|AAY84881.1| U2AF large subunit [Triticum aestivum]
Length = 591
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 229/407 (56%), Positives = 275/407 (67%), Gaps = 26/407 (6%)
Query: 29 GERGRDRHHRDFKSGGDDRRRDKNYKYDREGIRDHDRTDRHRDYNRDKERRHRHRSRSHS 88
G R R+RHHRD + G DR R + D + D + R R
Sbjct: 131 GSRDRERHHRDHREGSRDRER---HHRDHRERSERREHRDRSDDRDYRRSCDRDAERRDR 187
Query: 89 SDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPAA-AMLPGAAVPGQLPGVPSAVPEMAQNM 147
R +S SP RS S+SKR SGFD P A +L A P QLP +P+A P M NM
Sbjct: 188 DRDGHRRHRSRSPLRSESQSKRMSGFDQRPSEAIPILAPDATPSQLPELPAANPGMFPNM 247
Query: 148 LP--FGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGN 205
LP LG PL MTQQATRHARRVYVGGLPP+ANEQ +A FF+QVM AIGGN
Sbjct: 248 LPNLVNVPALGQ-PL----AMTQQATRHARRVYVGGLPPIANEQTVAVFFNQVMAAIGGN 302
Query: 206 SAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAA 265
+ G AVVNVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG V+VRRPTDYNP+ AA
Sbjct: 303 TFALGHAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSQAA 362
Query: 266 ALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFD 325
ALGP QP+PNLNLAAVGL GA GG EGPDR+FVGGLPYYFTE Q++ELLE+FG L GFD
Sbjct: 363 ALGPSQPNPNLNLAAVGLTPGAGGGLEGPDRIFVGGLPYYFTEAQVRELLETFGPLRGFD 422
Query: 326 LVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESI 385
+VKD++TGNSKGY FC+Y+D VTDIACAALNG+++GD+TLTVRRA + + EQE+I
Sbjct: 423 IVKDKETGNSKGYAFCLYKDGTVTDIACAALNGIQLGDRTLTVRRAN-QGAEPRPEQENI 481
Query: 386 LAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETL-AKVLCLTEMMKS 431
L QAQQ ++++ + G TL KV+CLT+++ +
Sbjct: 482 LLQAQQEAQMKRLVYEV-------------GRTLTTKVVCLTQVVSA 515
>gi|115486631|ref|NP_001068459.1| Os11g0682300 [Oryza sativa Japonica Group]
gi|113645681|dbj|BAF28822.1| Os11g0682300, partial [Oryza sativa Japonica Group]
Length = 378
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/303 (68%), Positives = 240/303 (79%), Gaps = 16/303 (5%)
Query: 129 VPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANE 188
+ GQ PG +A+P M NMLP G Q + P Q MTQQATRHARRVYVGGLPP ANE
Sbjct: 1 IAGQFPG--TAIPGMFPNMLPMGVGQFNPLVIQP-QAMTQQATRHARRVYVGGLPPTANE 57
Query: 189 QAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG 248
Q++A +F+QVM AIGGN+AGPGDAV+NVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG
Sbjct: 58 QSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGILFEG 117
Query: 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTE 308
V+VRRPTDYNP+LAAALGP QPSPNLNLAAVGL G+ GG EGPDR+FVGGLPYYFTE
Sbjct: 118 APVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTE 177
Query: 309 TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQD VTDIACAALNG+KMGDKTLTV
Sbjct: 178 AQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTV 237
Query: 369 RRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEM 428
RRA + Q + EQESIL QAQQ + +QK+ Q + T KV+CLT++
Sbjct: 238 RRANQGAAQPRPEQESILLQAQQQVQLQKLVYQVGALPT-------------KVVCLTQV 284
Query: 429 MKS 431
+ +
Sbjct: 285 VSA 287
>gi|414591746|tpg|DAA42317.1| TPA: hypothetical protein ZEAMMB73_924732 [Zea mays]
Length = 538
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/322 (64%), Positives = 245/322 (76%), Gaps = 17/322 (5%)
Query: 112 SGFDMAPPAAAM--LPGAAVPGQLPGVPSAVPEMA--QNMLPFGATQLGAFPLMPVQVMT 167
SGFD AP A+ + +PGQLPGV + +P + N+ A Q + P Q MT
Sbjct: 190 SGFDQAPTQQALPIVAAGVIPGQLPGVTAPIPGVGVLPNLYNLAAGQFNPLAIQP-QAMT 248
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFV 227
QQATRHARRVYVGGLPP ANEQ +A FF+ VM AIGGN+AGPGDAV+NVYINH+KKFAFV
Sbjct: 249 QQATRHARRVYVGGLPPTANEQTVAIFFNGVMAAIGGNTAGPGDAVLNVYINHDKKFAFV 308
Query: 228 EMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGA 287
EMR+VEEASNAM LDGI+FEG V++RRPTDYNP+LAAALGP QP+PNLNL+AVGL G+
Sbjct: 309 EMRSVEEASNAMVLDGIMFEGAPVKIRRPTDYNPSLAAALGPSQPNPNLNLSAVGLTPGS 368
Query: 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
GG EGPDR+FVGGL YYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQD
Sbjct: 369 AGGLEGPDRIFVGGLQYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLN 428
Query: 348 VTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNT 407
VTDIACAALNG+KMGDKTLTVRRA + Q + EQESIL QAQQ + +QK Q
Sbjct: 429 VTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESILLQAQQQVQMQKFVYQ------ 482
Query: 408 LGGGMSLFGETLAKVLCLTEMM 429
+GG + KV+CLT+++
Sbjct: 483 VGGALP------TKVVCLTQVV 498
>gi|357160098|ref|XP_003578657.1| PREDICTED: splicing factor U2af large subunit B-like [Brachypodium
distachyon]
Length = 534
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 221/389 (56%), Positives = 269/389 (69%), Gaps = 48/389 (12%)
Query: 69 HRDYNRDKERRHR--------------------HRSRSHSSDRFRNRSKS-------LSP 101
H D NRD++R H+ RSR+H S+R R R + S
Sbjct: 73 HGDRNRDRDRHHQEHRERSERREHRGRSDDHDYRRSRNHESER-RERDRDGHRRQRSRSR 131
Query: 102 SRSPSKSKRRSGFDMAPPAAAMLPGAAV-PGQLPGVPSAVPEMAQNMLPFGATQLGAFPL 160
SRS ++SKR SGFD P + +V PG LP VP+A+P M NM + P
Sbjct: 132 SRSRAQSKRVSGFDQGPSQTISIAAPSVTPGLLPAVPAAIPAMLPNMF---NIPIAGQP- 187
Query: 161 MPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH 220
Q MTQQATRHARRVYVGGLPP ANEQ +A +F+ VM AIGGN+AG GDAVVNVYINH
Sbjct: 188 ---QAMTQQATRHARRVYVGGLPPSANEQTVAIYFNHVMAAIGGNAAGLGDAVVNVYINH 244
Query: 221 EKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
+KKFAFVEMR+VEEASNAMALDGI+FEG V+VRRPTDYNP+ AA LGP QP+PNLNLAA
Sbjct: 245 DKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSQAAVLGPSQPNPNLNLAA 304
Query: 281 VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGF 340
VGL G+ GG EGPDR+FVGGLPYYFTE Q++ELLE+FG L GFD+VKDR+TGNSKGY F
Sbjct: 305 VGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVQELLETFGPLRGFDIVKDRETGNSKGYAF 364
Query: 341 CVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMAL 400
CVYQD AVTDIACAALNG+++GD+TLTVRRA + + + E E+IL QAQ ++K+
Sbjct: 365 CVYQDLAVTDIACAALNGIQLGDRTLTVRRANQGAAEPRPEHENILLQAQHQAQMKKLVY 424
Query: 401 QTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ +GG + KV+CLT+++
Sbjct: 425 E------VGGAIP------TKVVCLTQVV 441
>gi|414591747|tpg|DAA42318.1| TPA: hypothetical protein ZEAMMB73_924732 [Zea mays]
Length = 590
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/322 (64%), Positives = 245/322 (76%), Gaps = 17/322 (5%)
Query: 112 SGFDMAPPAAAM--LPGAAVPGQLPGVPSAVPEMA--QNMLPFGATQLGAFPLMPVQVMT 167
SGFD AP A+ + +PGQLPGV + +P + N+ A Q + P Q MT
Sbjct: 190 SGFDQAPTQQALPIVAAGVIPGQLPGVTAPIPGVGVLPNLYNLAAGQFNPLAIQP-QAMT 248
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFV 227
QQATRHARRVYVGGLPP ANEQ +A FF+ VM AIGGN+AGPGDAV+NVYINH+KKFAFV
Sbjct: 249 QQATRHARRVYVGGLPPTANEQTVAIFFNGVMAAIGGNTAGPGDAVLNVYINHDKKFAFV 308
Query: 228 EMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGA 287
EMR+VEEASNAM LDGI+FEG V++RRPTDYNP+LAAALGP QP+PNLNL+AVGL G+
Sbjct: 309 EMRSVEEASNAMVLDGIMFEGAPVKIRRPTDYNPSLAAALGPSQPNPNLNLSAVGLTPGS 368
Query: 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
GG EGPDR+FVGGL YYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQD
Sbjct: 369 AGGLEGPDRIFVGGLQYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLN 428
Query: 348 VTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNT 407
VTDIACAALNG+KMGDKTLTVRRA + Q + EQESIL QAQQ + +QK Q
Sbjct: 429 VTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESILLQAQQQVQMQKFVYQ------ 482
Query: 408 LGGGMSLFGETLAKVLCLTEMM 429
+GG + KV+CLT+++
Sbjct: 483 VGGALP------TKVVCLTQVV 498
>gi|218186084|gb|EEC68511.1| hypothetical protein OsI_36782 [Oryza sativa Indica Group]
Length = 574
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/298 (66%), Positives = 228/298 (76%), Gaps = 12/298 (4%)
Query: 132 QLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAI 191
Q+P V A+ M NM T + P Q MTQQATRHARRVYVGGLPP ANE +
Sbjct: 196 QVPVVAPAISGMLPNMFNLTQTPFTPLVIQP-QAMTQQATRHARRVYVGGLPPTANEHTV 254
Query: 192 ATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251
A +F+QVM A+GGN+AGPGDAV+NVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG V
Sbjct: 255 AVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPV 314
Query: 252 RVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQI 311
+VRRPTDYNP+LAAALGP QP+PNLNLAAVGL G+ GG EGPDR+FVGGLPYYFTE Q+
Sbjct: 315 KVRRPTDYNPSLAAALGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQV 374
Query: 312 KELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
+ELLESFG L GFDLVKDR+TGNSKGY FCVYQD VTDIACAALNG+KMGDKTLTVRRA
Sbjct: 375 RELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRA 434
Query: 372 TASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ Q + EQES+L QQ +QK+ Q G G KV+CLT+++
Sbjct: 435 NQGASQPRPEQESMLLHVQQQAQMQKLMFQVGG-----------GALPTKVVCLTQVI 481
>gi|115486373|ref|NP_001068330.1| Os11g0636900 [Oryza sativa Japonica Group]
gi|122248736|sp|Q2R0Q1.2|U2A2A_ORYSJ RecName: Full=Splicing factor U2af large subunit A; AltName:
Full=U2 auxiliary factor 65 kDa subunit A; AltName:
Full=U2 small nuclear ribonucleoprotein auxiliary factor
large subunit A; Short=U2 snRNP auxiliary factor large
subunit A
gi|108864607|gb|ABA94914.2| U2 snRNP auxilliary factor, large subunit, splicing factor family
protein, expressed [Oryza sativa Japonica Group]
gi|113645552|dbj|BAF28693.1| Os11g0636900 [Oryza sativa Japonica Group]
gi|222616290|gb|EEE52422.1| hypothetical protein OsJ_34542 [Oryza sativa Japonica Group]
Length = 574
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/298 (66%), Positives = 228/298 (76%), Gaps = 12/298 (4%)
Query: 132 QLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAI 191
Q+P V A+ M NM T + P Q MTQQATRHARRVYVGGLPP ANE +
Sbjct: 196 QVPVVAPAISGMLPNMFNLTQTPFTPLVIQP-QAMTQQATRHARRVYVGGLPPTANEHTV 254
Query: 192 ATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251
A +F+QVM A+GGN+AGPGDAV+NVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG V
Sbjct: 255 AVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPV 314
Query: 252 RVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQI 311
+VRRPTDYNP+LAAALGP QP+PNLNLAAVGL G+ GG EGPDR+FVGGLPYYFTE Q+
Sbjct: 315 KVRRPTDYNPSLAAALGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQV 374
Query: 312 KELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
+ELLESFG L GFDLVKDR+TGNSKGY FCVYQD VTDIACAALNG+KMGDKTLTVRRA
Sbjct: 375 RELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRA 434
Query: 372 TASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ Q + EQES+L QQ +QK+ Q G G KV+CLT+++
Sbjct: 435 NQGASQPRPEQESMLLHVQQQAQMQKLMFQVGG-----------GALPTKVVCLTQVV 481
>gi|108864608|gb|ABG22562.1| U2 snRNP auxilliary factor, large subunit, splicing factor family
protein, expressed [Oryza sativa Japonica Group]
Length = 550
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/298 (66%), Positives = 228/298 (76%), Gaps = 12/298 (4%)
Query: 132 QLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAI 191
Q+P V A+ M NM T + P Q MTQQATRHARRVYVGGLPP ANE +
Sbjct: 196 QVPVVAPAISGMLPNMFNLTQTPFTPLVIQP-QAMTQQATRHARRVYVGGLPPTANEHTV 254
Query: 192 ATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251
A +F+QVM A+GGN+AGPGDAV+NVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG V
Sbjct: 255 AVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPV 314
Query: 252 RVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQI 311
+VRRPTDYNP+LAAALGP QP+PNLNLAAVGL G+ GG EGPDR+FVGGLPYYFTE Q+
Sbjct: 315 KVRRPTDYNPSLAAALGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQV 374
Query: 312 KELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
+ELLESFG L GFDLVKDR+TGNSKGY FCVYQD VTDIACAALNG+KMGDKTLTVRRA
Sbjct: 375 RELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRA 434
Query: 372 TASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ Q + EQES+L QQ +QK+ Q G G KV+CLT+++
Sbjct: 435 NQGASQPRPEQESMLLHVQQQAQMQKLMFQVGG-----------GALPTKVVCLTQVV 481
>gi|226532558|ref|NP_001140768.1| uncharacterized protein LOC100272843 [Zea mays]
gi|194701008|gb|ACF84588.1| unknown [Zea mays]
gi|414591744|tpg|DAA42315.1| TPA: hypothetical protein ZEAMMB73_924732 [Zea mays]
Length = 583
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 208/322 (64%), Positives = 243/322 (75%), Gaps = 24/322 (7%)
Query: 112 SGFDMAPPAAAM--LPGAAVPGQLPGVPSAVPEMA--QNMLPFGATQLGAFPLMPVQVMT 167
SGFD AP A+ + +PGQLPGV + +P + N+ A Q Q MT
Sbjct: 190 SGFDQAPTQQALPIVAAGVIPGQLPGVTAPIPGVGVLPNLYNLAAGQ--------PQAMT 241
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFV 227
QQATRHARRVYVGGLPP ANEQ +A FF+ VM AIGGN+AGPGDAV+NVYINH+KKFAFV
Sbjct: 242 QQATRHARRVYVGGLPPTANEQTVAIFFNGVMAAIGGNTAGPGDAVLNVYINHDKKFAFV 301
Query: 228 EMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGA 287
EMR+VEEASNAM LDGI+FEG V++RRPTDYNP+LAAALGP QP+PNLNL+AVGL G+
Sbjct: 302 EMRSVEEASNAMVLDGIMFEGAPVKIRRPTDYNPSLAAALGPSQPNPNLNLSAVGLTPGS 361
Query: 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
GG EGPDR+FVGGL YYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQD
Sbjct: 362 AGGLEGPDRIFVGGLQYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLN 421
Query: 348 VTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNT 407
VTDIACAALNG+KMGDKTLTVRRA + Q + EQESIL QAQQ + +QK Q
Sbjct: 422 VTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESILLQAQQQVQMQKFVYQ------ 475
Query: 408 LGGGMSLFGETLAKVLCLTEMM 429
+GG + KV+CLT+++
Sbjct: 476 VGGALP------TKVVCLTQVV 491
>gi|414591745|tpg|DAA42316.1| TPA: hypothetical protein ZEAMMB73_924732 [Zea mays]
Length = 538
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/322 (64%), Positives = 243/322 (75%), Gaps = 24/322 (7%)
Query: 112 SGFDMAPPAAAM--LPGAAVPGQLPGVPSAVPEMA--QNMLPFGATQLGAFPLMPVQVMT 167
SGFD AP A+ + +PGQLPGV + +P + N+ A Q Q MT
Sbjct: 190 SGFDQAPTQQALPIVAAGVIPGQLPGVTAPIPGVGVLPNLYNLAAGQ--------PQAMT 241
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFV 227
QQATRHARRVYVGGLPP ANEQ +A FF+ VM AIGGN+AGPGDAV+NVYINH+KKFAFV
Sbjct: 242 QQATRHARRVYVGGLPPTANEQTVAIFFNGVMAAIGGNTAGPGDAVLNVYINHDKKFAFV 301
Query: 228 EMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGA 287
EMR+VEEASNAM LDGI+FEG V++RRPTDYNP+LAAALGP QP+PNLNL+AVGL G+
Sbjct: 302 EMRSVEEASNAMVLDGIMFEGAPVKIRRPTDYNPSLAAALGPSQPNPNLNLSAVGLTPGS 361
Query: 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
GG EGPDR+FVGGL YYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQD
Sbjct: 362 AGGLEGPDRIFVGGLQYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLN 421
Query: 348 VTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNT 407
VTDIACAALNG+KMGDKTLTVRRA + Q + EQESIL QAQQ + +QK Q
Sbjct: 422 VTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESILLQAQQQVQMQKFVYQ------ 475
Query: 408 LGGGMSLFGETLAKVLCLTEMM 429
+GG + KV+CLT+++
Sbjct: 476 VGGALP------TKVVCLTQVV 491
>gi|193848546|gb|ACF22733.1| U2AF large subunit [Brachypodium distachyon]
Length = 569
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 207/306 (67%), Positives = 240/306 (78%), Gaps = 21/306 (6%)
Query: 131 GQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQ-----ATRHARRVYVGGLPPL 185
GQLPG S++P M NMLPF Q + P Q MTQQ ATRHARRVYVGGLPP
Sbjct: 189 GQLPG--SSIPGMFPNMLPFAVGQFNPLVMQP-QAMTQQHIFPQATRHARRVYVGGLPPT 245
Query: 186 ANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGII 245
ANEQ++A +F+QVM AIGGN+AGPGDAV+NVYINH+KKFAFVEMR+VEEASNAMALDGI+
Sbjct: 246 ANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIL 305
Query: 246 FEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYY 305
FEG V+VRRPTDYNP+LA+ALGP QPS NLNLAAVGL G+ GG EGPDR+FVGGLPYY
Sbjct: 306 FEGAPVKVRRPTDYNPSLASALGPSQPSSNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYY 365
Query: 306 FTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT 365
FTE Q++ELLESFG+L GFDLVKDR+TGNSKGY FCVYQD VTDIACAALNG+KMGDKT
Sbjct: 366 FTEAQVRELLESFGSLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKT 425
Query: 366 LTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCL 425
LTVRRA S Q + EQE+IL QAQQ + +QK+ Q + T KV+CL
Sbjct: 426 LTVRRANQGSAQPRPEQENILLQAQQQVQLQKLVYQVGALPT-------------KVICL 472
Query: 426 TEMMKS 431
T+++ +
Sbjct: 473 TQVVTA 478
>gi|108864648|gb|ABG22574.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed
[Oryza sativa Japonica Group]
Length = 366
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 202/289 (69%), Positives = 231/289 (79%), Gaps = 14/289 (4%)
Query: 143 MAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAI 202
M NMLP G Q + P Q MTQQATRHARRVYVGGLPP ANEQ++A +F+QVM AI
Sbjct: 1 MFPNMLPMGVGQFNPLVIQP-QAMTQQATRHARRVYVGGLPPTANEQSVAIYFNQVMAAI 59
Query: 203 GGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPT 262
GGN+AGPGDAV+NVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG V+VRRPTDYNP+
Sbjct: 60 GGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPS 119
Query: 263 LAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 322
LAAALGP QPSPNLNLAAVGL G+ GG EGPDR+FVGGLPYYFTE Q++ELLESFG L
Sbjct: 120 LAAALGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLR 179
Query: 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQ 382
GFDLVKDR+TGNSKGY FCVYQD VTDIACAALNG+KMGDKTLTVRRA + Q + EQ
Sbjct: 180 GFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGAAQPRPEQ 239
Query: 383 ESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMMKS 431
ESIL QAQQ + +QK+ Q + T KV+CLT+++ +
Sbjct: 240 ESILLQAQQQVQLQKLVYQVGALPT-------------KVVCLTQVVSA 275
>gi|224030681|gb|ACN34416.1| unknown [Zea mays]
Length = 425
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/322 (64%), Positives = 243/322 (75%), Gaps = 24/322 (7%)
Query: 112 SGFDMAPPAAAM--LPGAAVPGQLPGVPSAVPEMA--QNMLPFGATQLGAFPLMPVQVMT 167
SGFD AP A+ + +PGQLPGV + +P + N+ A Q Q MT
Sbjct: 77 SGFDQAPTQQALPIVAAGVIPGQLPGVTAPIPGVGVLPNLYNLAAGQ--------PQAMT 128
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFV 227
QQATRHARRVYVGGLPP ANEQ +A FF+ VM AIGGN+AGPGDAV+NVYINH+KKFAFV
Sbjct: 129 QQATRHARRVYVGGLPPTANEQTVAIFFNGVMAAIGGNTAGPGDAVLNVYINHDKKFAFV 188
Query: 228 EMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGA 287
EMR+VEEASNAM LDGI+FEG V++RRPTDYNP+LAAALGP QP+PNLNL+AVGL G+
Sbjct: 189 EMRSVEEASNAMVLDGIMFEGAPVKIRRPTDYNPSLAAALGPSQPNPNLNLSAVGLTPGS 248
Query: 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
GG EGPDR+FVGGL YYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQD
Sbjct: 249 AGGLEGPDRIFVGGLQYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLN 308
Query: 348 VTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNT 407
VTDIACAALNG+KMGDKTLTVRRA + Q + EQESIL QAQQ + +QK Q
Sbjct: 309 VTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESILLQAQQQVQMQKFVYQ------ 362
Query: 408 LGGGMSLFGETLAKVLCLTEMM 429
+GG + KV+CLT+++
Sbjct: 363 VGGALP------TKVVCLTQVV 378
>gi|413920211|gb|AFW60143.1| hypothetical protein ZEAMMB73_955987 [Zea mays]
Length = 367
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/290 (70%), Positives = 233/290 (80%), Gaps = 15/290 (5%)
Query: 143 MAQNMLPFG-ATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTA 201
M NMLPFG A Q + P Q MTQQATRHARRVYVGGLPP ANEQ +A +F+QVM A
Sbjct: 1 MFPNMLPFGVAGQFNPLVIQP-QAMTQQATRHARRVYVGGLPPSANEQTVAIYFNQVMAA 59
Query: 202 IGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNP 261
IGGN+AGPGDAV+NVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG V+VRRPTDYNP
Sbjct: 60 IGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNP 119
Query: 262 TLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTL 321
+LAAALGP QPSPNLNLAAVGL +G+ GG EGPDR+FVGGLPYYFTE Q++ELLESFG L
Sbjct: 120 SLAAALGPSQPSPNLNLAAVGLTAGSNGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPL 179
Query: 322 HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTE 381
GFDLVKDR+TGNSKGY FCVYQD VTDIACAALNG+KMGDKTLTVRRA + Q + E
Sbjct: 180 RGFDLVKDRETGNSKGYAFCVYQDLTVTDIACAALNGIKMGDKTLTVRRANQGASQPRPE 239
Query: 382 QESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMMKS 431
QESIL QAQQ + +QK+ Q + T KV+CLT+++ +
Sbjct: 240 QESILLQAQQQVQLQKLVYQVGALPT-------------KVVCLTQVVTA 276
>gi|29367529|gb|AAO72620.1| putative U2 snRNP auxiliary factor [Oryza sativa Japonica Group]
Length = 331
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/266 (71%), Positives = 216/266 (81%), Gaps = 11/266 (4%)
Query: 164 QVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK 223
Q MTQQATRHARRVYVGGLPP ANE +A +F+QVM A+GGN+AGPGDAV+NVYINH+KK
Sbjct: 22 QAMTQQATRHARRVYVGGLPPTANEHTVAVYFNQVMAAVGGNTAGPGDAVLNVYINHDKK 81
Query: 224 FAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGL 283
FAFVEMR+VEEASNAMALDGI+FEG V+VRRPTDYNP+LAAALGP QP+PNLNLAAVGL
Sbjct: 82 FAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLAAVGL 141
Query: 284 ASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343
G+ GG EGPDR+FVGGLPYYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY FCVY
Sbjct: 142 TPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVY 201
Query: 344 QDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTS 403
QD VTDIACAALNG+KMGDKTLTVRRA + Q + EQES+L QQ +QK+ Q
Sbjct: 202 QDLNVTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESMLLHVQQQAQMQKLMFQVG 261
Query: 404 GMNTLGGGMSLFGETLAKVLCLTEMM 429
G G KV+CLT+++
Sbjct: 262 G-----------GALPTKVVCLTQVV 276
>gi|413920212|gb|AFW60144.1| hypothetical protein ZEAMMB73_955987 [Zea mays]
Length = 502
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 213/328 (64%), Positives = 246/328 (75%), Gaps = 28/328 (8%)
Query: 113 GFDMAPPAA--AMLPGAAVPGQLPGVPSAVPE---MAQNMLPFGATQLGAFPLMPVQVMT 167
GFD PP A + P P QLPG S++P M NMLPFG G F P+ +
Sbjct: 140 GFDAPPPQAMGSTFPVIPTPSQLPG--SSLPNIGGMFPNMLPFGVA--GQF--NPLVIQP 193
Query: 168 QQAT----RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK 223
Q T RHARRVYVGGLPP ANEQ +A +F+QVM AIGGN+AGPGDAV+NVYINH+KK
Sbjct: 194 QAMTQQATRHARRVYVGGLPPSANEQTVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKK 253
Query: 224 FAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGL 283
FAFVEMR+VEEASNAMALDGI+FEG V+VRRPTDYNP+LAAALGP QPSPNLNLAAVGL
Sbjct: 254 FAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGL 313
Query: 284 ASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343
+G+ GG EGPDR+FVGGLPYYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY FCVY
Sbjct: 314 TAGSNGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVY 373
Query: 344 QDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTS 403
QD VTDIACAALNG+KMGDKTLTVRRA + Q + EQESIL QAQQ + +QK+ Q
Sbjct: 374 QDLTVTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESILLQAQQQVQLQKLVYQVG 433
Query: 404 GMNTLGGGMSLFGETLAKVLCLTEMMKS 431
+ T KV+CLT+++ +
Sbjct: 434 ALPT-------------KVVCLTQVVTA 448
>gi|212723502|ref|NP_001131562.1| uncharacterized protein LOC100192903 [Zea mays]
gi|194691860|gb|ACF80014.1| unknown [Zea mays]
gi|195646366|gb|ACG42651.1| splicing factor U2AF 65 kDa subunit [Zea mays]
gi|413920213|gb|AFW60145.1| Splicing factor U2AF subunit [Zea mays]
Length = 539
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 213/328 (64%), Positives = 246/328 (75%), Gaps = 28/328 (8%)
Query: 113 GFDMAPPAA--AMLPGAAVPGQLPGVPSAVPE---MAQNMLPFGATQLGAFPLMPVQVMT 167
GFD PP A + P P QLPG S++P M NMLPFG G F P+ +
Sbjct: 140 GFDAPPPQAMGSTFPVIPTPSQLPG--SSLPNIGGMFPNMLPFGVA--GQF--NPLVIQP 193
Query: 168 QQAT----RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK 223
Q T RHARRVYVGGLPP ANEQ +A +F+QVM AIGGN+AGPGDAV+NVYINH+KK
Sbjct: 194 QAMTQQATRHARRVYVGGLPPSANEQTVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKK 253
Query: 224 FAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGL 283
FAFVEMR+VEEASNAMALDGI+FEG V+VRRPTDYNP+LAAALGP QPSPNLNLAAVGL
Sbjct: 254 FAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGL 313
Query: 284 ASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343
+G+ GG EGPDR+FVGGLPYYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY FCVY
Sbjct: 314 TAGSNGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVY 373
Query: 344 QDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTS 403
QD VTDIACAALNG+KMGDKTLTVRRA + Q + EQESIL QAQQ + +QK+ Q
Sbjct: 374 QDLTVTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESILLQAQQQVQLQKLVYQVG 433
Query: 404 GMNTLGGGMSLFGETLAKVLCLTEMMKS 431
+ T KV+CLT+++ +
Sbjct: 434 ALPT-------------KVVCLTQVVTA 448
>gi|413920214|gb|AFW60146.1| hypothetical protein ZEAMMB73_955987 [Zea mays]
Length = 536
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 213/328 (64%), Positives = 246/328 (75%), Gaps = 28/328 (8%)
Query: 113 GFDMAPPAA--AMLPGAAVPGQLPGVPSAVPE---MAQNMLPFGATQLGAFPLMPVQVMT 167
GFD PP A + P P QLPG S++P M NMLPFG G F P+ +
Sbjct: 140 GFDAPPPQAMGSTFPVIPTPSQLPG--SSLPNIGGMFPNMLPFGVA--GQF--NPLVIQP 193
Query: 168 QQAT----RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK 223
Q T RHARRVYVGGLPP ANEQ +A +F+QVM AIGGN+AGPGDAV+NVYINH+KK
Sbjct: 194 QAMTQQATRHARRVYVGGLPPSANEQTVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKK 253
Query: 224 FAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGL 283
FAFVEMR+VEEASNAMALDGI+FEG V+VRRPTDYNP+LAAALGP QPSPNLNLAAVGL
Sbjct: 254 FAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGL 313
Query: 284 ASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343
+G+ GG EGPDR+FVGGLPYYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY FCVY
Sbjct: 314 TAGSNGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVY 373
Query: 344 QDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTS 403
QD VTDIACAALNG+KMGDKTLTVRRA + Q + EQESIL QAQQ + +QK+ Q
Sbjct: 374 QDLTVTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESILLQAQQQVQLQKLVYQVG 433
Query: 404 GMNTLGGGMSLFGETLAKVLCLTEMMKS 431
+ T KV+CLT+++ +
Sbjct: 434 ALPT-------------KVVCLTQVVTA 448
>gi|9858779|gb|AAG01126.1|AF273333_11 BAC19.11 [Solanum lycopersicum]
Length = 532
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 205/322 (63%), Positives = 231/322 (71%), Gaps = 45/322 (13%)
Query: 112 SGFDMAPPAAAMLPGAA-VPGQLPGVPS-AVPEMAQNMLPFGATQLGAFPLMPVQVMTQQ 169
SGFDMAPP +A+L GA V GQ+PG + ++P M NM P A Q
Sbjct: 159 SGFDMAPPTSALLSGATDVAGQVPGTTNPSIPGMFSNMFPLAAGQ--------------- 203
Query: 170 ATRHARRVYVGGLPPLANEQAIATF--FSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFV 227
ATRHARRVYVGGLPP ANEQ + FS GDAVVNVYINHEKKFAFV
Sbjct: 204 ATRHARRVYVGGLPPTANEQVLKILLKFS-------------GDAVVNVYINHEKKFAFV 250
Query: 228 EMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGA 287
EMR+VEEASNAMALDG+IFEG V+VRRP+DYNP+LAA LGP QPSPNLNLAAVGL G+
Sbjct: 251 EMRSVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLTPGS 310
Query: 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
GG EGPDR+FVGGLPYYFTE+QI+ELLESFG L GFDLVKDR+TGNSKGY FCVYQD +
Sbjct: 311 SGGLEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVS 370
Query: 348 VTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNT 407
VTDIACAALNG+KMGDKTLTVRRA + Q EQES+L AQQ IA+Q+ LQ + T
Sbjct: 371 VTDIACAALNGIKMGDKTLTVRRANQGTTQPNPEQESVLLHAQQQIALQRFMLQPGALAT 430
Query: 408 LGGGMSLFGETLAKVLCLTEMM 429
KVLCLTE++
Sbjct: 431 -------------KVLCLTEVV 439
>gi|413920210|gb|AFW60142.1| hypothetical protein ZEAMMB73_955987 [Zea mays]
Length = 364
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/268 (72%), Positives = 222/268 (82%), Gaps = 13/268 (4%)
Query: 164 QVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK 223
Q MTQQATRHARRVYVGGLPP ANEQ +A +F+QVM AIGGN+AGPGDAV+NVYINH+KK
Sbjct: 19 QAMTQQATRHARRVYVGGLPPSANEQTVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKK 78
Query: 224 FAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGL 283
FAFVEMR+VEEASNAMALDGI+FEG V+VRRPTDYNP+LAAALGP QPSPNLNLAAVGL
Sbjct: 79 FAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGL 138
Query: 284 ASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343
+G+ GG EGPDR+FVGGLPYYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY FCVY
Sbjct: 139 TAGSNGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVY 198
Query: 344 QDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTS 403
QD VTDIACAALNG+KMGDKTLTVRRA + Q + EQESIL QAQQ + +QK+ Q
Sbjct: 199 QDLTVTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESILLQAQQQVQLQKLVYQVG 258
Query: 404 GMNTLGGGMSLFGETLAKVLCLTEMMKS 431
+ T KV+CLT+++ +
Sbjct: 259 ALPT-------------KVVCLTQVVTA 273
>gi|302813365|ref|XP_002988368.1| hypothetical protein SELMODRAFT_235524 [Selaginella moellendorffii]
gi|300143770|gb|EFJ10458.1| hypothetical protein SELMODRAFT_235524 [Selaginella moellendorffii]
Length = 353
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/236 (77%), Positives = 204/236 (86%), Gaps = 1/236 (0%)
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
L AF MP Q MTQQATRHAR+VYVGGLP L NEQ IATFF+QVM +GGN+AGPGD VV
Sbjct: 4 LAAFA-MPPQTMTQQATRHARQVYVGGLPGLVNEQTIATFFNQVMVNVGGNTAGPGDVVV 62
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
NVYIN EKKFAFVEMRTVEEASNAMALDGI F+GV+VRVRRP+DYNP++AA LGP QPSP
Sbjct: 63 NVYINQEKKFAFVEMRTVEEASNAMALDGISFQGVSVRVRRPSDYNPSVAANLGPSQPSP 122
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
+LNLAAVGL GA GG +GPDR+FVGGLPYY TE QI+ELLESFG L GFDLVKDR++GN
Sbjct: 123 SLNLAAVGLTPGAGGGVDGPDRIFVGGLPYYLTEPQIRELLESFGPLRGFDLVKDRESGN 182
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQ 390
SKGYGFCVYQDP VTD+ACAALNGLKMGD+TLTVRRATA+ Q+ + IL+ A+
Sbjct: 183 SKGYGFCVYQDPNVTDVACAALNGLKMGDRTLTVRRATANGQQAGQDHAHILSLAK 238
>gi|302795921|ref|XP_002979723.1| hypothetical protein SELMODRAFT_13030 [Selaginella moellendorffii]
gi|300152483|gb|EFJ19125.1| hypothetical protein SELMODRAFT_13030 [Selaginella moellendorffii]
Length = 360
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/236 (77%), Positives = 204/236 (86%), Gaps = 1/236 (0%)
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
L AF MP Q MTQQATRHAR+VYVGGLP L NEQ IATFF+QVM +GGN+AGPGD VV
Sbjct: 11 LAAFA-MPPQTMTQQATRHARQVYVGGLPGLVNEQTIATFFNQVMVNVGGNTAGPGDVVV 69
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
NVYIN EKKFAFVEMRTVEEASNAMALDGI F+GV+VRVRRP+DYNP++AA LGP QPSP
Sbjct: 70 NVYINQEKKFAFVEMRTVEEASNAMALDGISFQGVSVRVRRPSDYNPSVAANLGPSQPSP 129
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
+LNLAAVGL GA GG +GPDR+FVGGLPYY TE QI+ELLESFG L GFDLVKDR++GN
Sbjct: 130 SLNLAAVGLTPGAGGGVDGPDRIFVGGLPYYLTEPQIRELLESFGPLRGFDLVKDRESGN 189
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQ 390
SKGYGFCVYQDP VTD+ACAALNGLKMGD+TLTVRRATA+ Q+ + IL+ A+
Sbjct: 190 SKGYGFCVYQDPNVTDVACAALNGLKMGDRTLTVRRATANGQQAGQDHAHILSLAK 245
>gi|242069431|ref|XP_002449992.1| hypothetical protein SORBIDRAFT_05g026786 [Sorghum bicolor]
gi|241935835|gb|EES08980.1| hypothetical protein SORBIDRAFT_05g026786 [Sorghum bicolor]
Length = 296
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 187/268 (69%), Positives = 214/268 (79%), Gaps = 14/268 (5%)
Query: 164 QVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK 223
Q MTQ ATRHARRVYVGGLPP ANEQ +A +F+Q+M AIGGN+AGPGDAV+NVYINH+KK
Sbjct: 9 QAMTQHATRHARRVYVGGLPPDANEQTVAVYFNQIMAAIGGNTAGPGDAVLNVYINHDKK 68
Query: 224 FAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGL 283
FA VEMR+VEEASNAMALDGI+FEGV V+VRRPTDYNP+LAAALGP QPSPNLNLAAVGL
Sbjct: 69 FASVEMRSVEEASNAMALDGIMFEGVPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGL 128
Query: 284 ASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343
+G+ GG E PDR+FVGGLPYYFTE Q++ELLESFG L GFDLVKD++TGNSKGY FC Y
Sbjct: 129 TAGS-GGLEDPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDKETGNSKGYAFCDY 187
Query: 344 QDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTS 403
QD VTDIACAALNG+KMGDK LTVRRA + Q EQESIL QAQQ + +QK+A
Sbjct: 188 QDLTVTDIACAALNGIKMGDKILTVRRANQGASQPTPEQESILLQAQQQVQMQKLAHPVG 247
Query: 404 GMNTLGGGMSLFGETLAKVLCLTEMMKS 431
T KV+CL ++ +
Sbjct: 248 AAPT-------------KVVCLVHVVSA 262
>gi|224077136|ref|XP_002305148.1| predicted protein [Populus trichocarpa]
gi|222848112|gb|EEE85659.1| predicted protein [Populus trichocarpa]
Length = 296
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 170/203 (83%), Positives = 177/203 (87%), Gaps = 2/203 (0%)
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNP+LAA LGP QPSP LNLAAVGL G I
Sbjct: 1 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPSLAATLGPSQPSPLLNLAAVGLVPGTI 60
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GAEGPDRVFVGGLPYYFTE QI+ELLESFG L GFDLVKDRDTGNSKGYGFCVYQDPAV
Sbjct: 61 SGAEGPDRVFVGGLPYYFTEIQIRELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDPAV 120
Query: 349 TDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTL 408
TDIACAALNGLKMGDKTLTVRRAT S GQSK+EQE+ILAQAQQHIAIQKMALQ MN
Sbjct: 121 TDIACAALNGLKMGDKTLTVRRATESGGQSKSEQENILAQAQQHIAIQKMALQAGVMNLP 180
Query: 409 GGGMSLF--GETLAKVLCLTEMM 429
G G+ L T +KVLCLTE +
Sbjct: 181 GVGIPLAESAYTPSKVLCLTEAI 203
>gi|224125466|ref|XP_002329812.1| predicted protein [Populus trichocarpa]
gi|222870874|gb|EEF08005.1| predicted protein [Populus trichocarpa]
Length = 321
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 167/203 (82%), Positives = 176/203 (86%), Gaps = 2/203 (0%)
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
MRTVEEASNAM LDGIIFEGVAVRVRRPTDYNP+LAA LGP QPSP LNLAAVGL G I
Sbjct: 1 MRTVEEASNAMTLDGIIFEGVAVRVRRPTDYNPSLAATLGPSQPSPLLNLAAVGLVPGTI 60
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GAEGPDRVFVGGLPYYFTETQI+ELLESFG L GFDLVKDRDTGNSKGYGFCVYQDPAV
Sbjct: 61 SGAEGPDRVFVGGLPYYFTETQIRELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDPAV 120
Query: 349 TDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTL 408
TDIACAALNGLKMGDKTLTVRR T S GQS++EQE+ILAQAQQHIAIQKMALQ MN
Sbjct: 121 TDIACAALNGLKMGDKTLTVRRGTESGGQSRSEQENILAQAQQHIAIQKMALQAGVMNLP 180
Query: 409 GGGMSLF--GETLAKVLCLTEMM 429
G G+ L + +KVLCLTE +
Sbjct: 181 GVGIPLAESSHSPSKVLCLTEAI 203
>gi|384249807|gb|EIE23288.1| hypothetical protein COCSUDRAFT_23864, partial [Coccomyxa
subellipsoidea C-169]
Length = 464
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 176/286 (61%), Positives = 202/286 (70%), Gaps = 27/286 (9%)
Query: 111 RSGFDMAPPAA-----AMLPGAAVPGQLPGV----------PSAVPEMAQN-----MLPF 150
+SGFD PP LP PG +PGV +A P N P
Sbjct: 58 KSGFDQPPPGGIPPVFGGLPAGLPPG-MPGVEAIAAVAAPLAAAAPTGFSNGGFSGAPPM 116
Query: 151 GATQLGAFPLMP-VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP 209
TQ+G +MP VQ +QQATRHARRVYVGGLPP NEQ IATFFS + AIGG +AGP
Sbjct: 117 IGTQMGG--MMPGVQPPSQQATRHARRVYVGGLPPTGNEQNIATFFSNALAAIGGTTAGP 174
Query: 210 GDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGP 269
G +VVNVYIN+EKKFAFVE RTVEE SNAMALDGI+FEGV+VRVRRP DYNP A+ALGP
Sbjct: 175 GASVVNVYINYEKKFAFVEFRTVEETSNAMALDGIMFEGVSVRVRRPNDYNPAAASALGP 234
Query: 270 GQPSPNLNLAAVGLASG---AIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326
P+PNLNLAA+GL +G A+ + +RVFVGGLPYY E Q +ELL SFG + FDL
Sbjct: 235 SVPNPNLNLAAIGLQAGGMNAVAMIDAAERVFVGGLPYYLNEEQCRELLGSFGGIKSFDL 294
Query: 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
VKDR+TGNSKGYGF VY DP VTDIACA LNG++MG++TLTVRRAT
Sbjct: 295 VKDRETGNSKGYGFVVYTDPNVTDIACAGLNGMRMGERTLTVRRAT 340
>gi|159473054|ref|XP_001694654.1| U2 snRNP auxiliary factor, large subunit [Chlamydomonas
reinhardtii]
gi|158276466|gb|EDP02238.1| U2 snRNP auxiliary factor, large subunit [Chlamydomonas
reinhardtii]
Length = 306
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 151/207 (72%), Positives = 173/207 (83%), Gaps = 5/207 (2%)
Query: 166 MTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFA 225
++QQATRHARR+YVGGLPP A EQ+I++FFS + AIGGN+AGPG+AVVNVYIN EK FA
Sbjct: 4 VSQQATRHARRIYVGGLPPTATEQSISSFFSHALAAIGGNTAGPGNAVVNVYINREKNFA 63
Query: 226 FVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLAS 285
FVE+RTVEE SN+MALDGI+FEGV+VRVRRP DYNP A +LGP P+P LNLAA+GL
Sbjct: 64 FVELRTVEETSNSMALDGIMFEGVSVRVRRPNDYNPAAAVSLGPSTPNPALNLAAIGLNP 123
Query: 286 GAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQD 345
+ PDR+FVGGLPYY TE Q +ELL SFG + FDLVKDRDTGNSKGYGF VYQD
Sbjct: 124 N-----DNPDRIFVGGLPYYLTEDQCRELLGSFGAIKSFDLVKDRDTGNSKGYGFVVYQD 178
Query: 346 PAVTDIACAALNGLKMGDKTLTVRRAT 372
+VTDIACA LNGLKMGD+TLTVRRAT
Sbjct: 179 TSVTDIACAGLNGLKMGDRTLTVRRAT 205
>gi|242069429|ref|XP_002449991.1| hypothetical protein SORBIDRAFT_05g026783 [Sorghum bicolor]
gi|241935834|gb|EES08979.1| hypothetical protein SORBIDRAFT_05g026783 [Sorghum bicolor]
Length = 249
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 153/228 (67%), Positives = 179/228 (78%), Gaps = 1/228 (0%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P Q+MT++AT RRVYVG LPP ANEQ I FF+QVM IGGN+AGPGDAV + +
Sbjct: 11 PHTTTQLMTREATLFTRRVYVGDLPPSANEQTIGVFFNQVMAVIGGNTAGPGDAVCGICM 70
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
NHE++FA VE R EEASNAMALDGI+FEGV V+VRRP DYN + AAA+GP QPS LNL
Sbjct: 71 NHEQRFALVEFRMAEEASNAMALDGILFEGVPVKVRRPADYNLSQAAAMGPTQPSRKLNL 130
Query: 279 AAVGLASG-AIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
AAVGL +G A GG+E PDR+FVGGLPYY++E Q+++LLE G L GF+LVKDR+TGNSKG
Sbjct: 131 AAVGLTAGSAGGGSEDPDRIFVGGLPYYYSEAQVRDLLECIGPLRGFELVKDRETGNSKG 190
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESI 385
Y FCVY D TDIACA LNG+KMGDK LTVRRA S+ Q + EQESI
Sbjct: 191 YAFCVYMDTTATDIACADLNGIKMGDKILTVRRANQSASQPRPEQESI 238
>gi|302846543|ref|XP_002954808.1| splicing factor U2AF, large subunit [Volvox carteri f. nagariensis]
gi|300259991|gb|EFJ44214.1| splicing factor U2AF, large subunit [Volvox carteri f. nagariensis]
Length = 532
Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 140/209 (66%), Positives = 166/209 (79%), Gaps = 2/209 (0%)
Query: 166 MTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGD-AVVNVYINHEKKF 224
++QQATRHARR+YVGGLPP A EQ+I++FFS + AIGGN+AGPG + I +
Sbjct: 187 VSQQATRHARRIYVGGLPPTATEQSISSFFSHALAAIGGNTAGPGGFPFHSTSITSPQSI 246
Query: 225 AFVEMRT-VEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGL 283
+R +EE SNAMALDGI+FEGV+VRVRRP DYNP AA+LGP P+PNLNLAA+GL
Sbjct: 247 RSSILREFIEETSNAMALDGIMFEGVSVRVRRPNDYNPAAAASLGPSTPNPNLNLAAIGL 306
Query: 284 ASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343
++ A GGA+ DR+FVGGLPYY TE Q +ELL SFG + FDLVKDR+TGNSKGYGF VY
Sbjct: 307 SNAAGGGADQADRIFVGGLPYYLTEEQCRELLGSFGPIKSFDLVKDRETGNSKGYGFVVY 366
Query: 344 QDPAVTDIACAALNGLKMGDKTLTVRRAT 372
QD AVTDIACA LNGL+MGD+TLTVRRAT
Sbjct: 367 QDSAVTDIACAGLNGLRMGDRTLTVRRAT 395
>gi|145344032|ref|XP_001416543.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576769|gb|ABO94836.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 291
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 134/217 (61%), Positives = 163/217 (75%), Gaps = 8/217 (3%)
Query: 167 TQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAF 226
T QATRHARR+YVGG+P NE + FF+ + A+GG + G VVNVYIN EKKFAF
Sbjct: 1 TAQATRHARRIYVGGIPLTTNEADVNAFFNNALLAVGGTNGAEGQPVVNVYINVEKKFAF 60
Query: 227 VEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASG 286
VE R+VEEASNA+ALDGI+ +GV VR+RRP DYNP+LA LGP P+P LNLAA+GL
Sbjct: 61 VEFRSVEEASNALALDGIVLDGVPVRIRRPNDYNPSLAHDLGPSMPNPALNLAAIGLDPS 120
Query: 287 A-----IGGA---EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
A +GG E DR+F+GGLPY+ E QI+ELLE+FG + FDLV+D++TGNSKGY
Sbjct: 121 ALQRAGVGGNLLHEHEDRIFIGGLPYFLDEAQIRELLEAFGPIRQFDLVRDKETGNSKGY 180
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
GF VY+D +VTDIAC LNG+ MGDKTLTVRRA S+
Sbjct: 181 GFVVYEDVSVTDIACQGLNGMTMGDKTLTVRRAEQSN 217
>gi|357446501|ref|XP_003593528.1| Splicing factor U2af large subunit B [Medicago truncatula]
gi|355482576|gb|AES63779.1| Splicing factor U2af large subunit B [Medicago truncatula]
Length = 593
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 130/188 (69%), Positives = 158/188 (84%), Gaps = 3/188 (1%)
Query: 244 IIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLP 303
+I GVAVRVRRPTDYNP+LAA LGP QPS NLNL+AVGL++G IGGAEG DR+FVGGLP
Sbjct: 318 LIHVGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGGAEGLDRIFVGGLP 377
Query: 304 YYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 363
YYFTE Q++ELL++FG L FD+V+D++TGNSKGYGFC+YQDPAVTDIACAALNGLKMGD
Sbjct: 378 YYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAALNGLKMGD 437
Query: 364 KTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVL 423
KTLTVRRAT S+ SK E+++I A+AQQHIA+QK+AL+ G+N G+ E+ KVL
Sbjct: 438 KTLTVRRATVSA-HSKPEEDNIFARAQQHIAMQKIALEVVGLNI--PGVPTNDESPTKVL 494
Query: 424 CLTEMMKS 431
CLTE + +
Sbjct: 495 CLTEAVTT 502
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/203 (64%), Positives = 154/203 (75%), Gaps = 6/203 (2%)
Query: 49 RDKNYKYDREGIRDHDRTDRHRDYNRDKERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKS 108
R K Y+R+ RD+DR H DY+RD++ R+R+ + S S R +RS+S S S S S+
Sbjct: 58 RGKYDSYNRQRGRDYDR---HNDYDRDRDTRNRYGAHSKRSRR-ESRSRSRSRSPSQSEG 113
Query: 109 KRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQ 168
KR SGFDMAPPA + P V GQ+PG+ + QN P+G +Q+GA LM VQ MTQ
Sbjct: 114 KRTSGFDMAPPATGVTP--TVSGQMPGIAHMIQGATQNFSPYGISQIGALSLMQVQPMTQ 171
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVE 228
QATRHARRVYVGGLPP ANEQ+IA+FFSQVM AIGGNSAG GD+VVNVYINHEKKFAFVE
Sbjct: 172 QATRHARRVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAFVE 231
Query: 229 MRTVEEASNAMALDGIIFEGVAV 251
MRTVEEASNAMALDGI+FEG+ V
Sbjct: 232 MRTVEEASNAMALDGIVFEGIGV 254
>gi|308801273|ref|XP_003077950.1| U2 snRNP auxiliary factor, large subunit (ISS) [Ostreococcus tauri]
gi|116056401|emb|CAL52690.1| U2 snRNP auxiliary factor, large subunit (ISS) [Ostreococcus tauri]
Length = 388
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 125/213 (58%), Positives = 161/213 (75%), Gaps = 8/213 (3%)
Query: 166 MTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFA 225
+T Q TRHARR+Y+GG P +ANEQ +++FF+ + A+GG ++ VVNVYIN EKKFA
Sbjct: 49 ITAQTTRHARRIYLGGCPTMANEQELSSFFNDALVAVGGTTSEEA-PVVNVYINLEKKFA 107
Query: 226 FVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLAS 285
FVE R+VEE SNA+ALDG++ +G VR+RRP DYNP +A LGP P+P LNL A+GL
Sbjct: 108 FVEFRSVEECSNALALDGVMIQGEPVRIRRPNDYNPQIAQGLGPSTPNPKLNLQAIGLDP 167
Query: 286 GAIGGA-------EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
A+ + E P+R+F+GGLPYY E Q++ELLE+FG + FDLV+D++ GNSKGY
Sbjct: 168 SALARSATTNILQEDPNRIFIGGLPYYLEEPQVRELLEAFGPIARFDLVRDKENGNSKGY 227
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
GF VYQD AVTDIAC LNG++MG+KTLTVRRA
Sbjct: 228 GFVVYQDAAVTDIACQGLNGMQMGEKTLTVRRA 260
>gi|303273844|ref|XP_003056274.1| RNA binding protein [Micromonas pusilla CCMP1545]
gi|226462358|gb|EEH59650.1| RNA binding protein [Micromonas pusilla CCMP1545]
Length = 564
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 132/226 (58%), Positives = 163/226 (72%), Gaps = 22/226 (9%)
Query: 167 TQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGG---NSAGPG-DAVVNVYINHEK 222
+ QATRHARR+YVGGLP ANE + ATFFS + AIGG +A G + V+NVY+NHEK
Sbjct: 156 STQATRHARRIYVGGLPATANEASTATFFSNALAAIGGVVQTAAAAGVEPVLNVYMNHEK 215
Query: 223 KFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVG 282
KFAFVE RTVEE SNA+ALDG++F+GV++RVRRP DYN +AA LGP PS +L+LAA+G
Sbjct: 216 KFAFVEFRTVEETSNAIALDGVVFDGVSLRVRRPNDYNAAIAATLGPSTPSTDLDLAAIG 275
Query: 283 LASGA------------------IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324
L GA + + +R+FVGGLPY+ TE +KEL+E+FG F
Sbjct: 276 LVPGAGGAAGGAGAGGAAGGQNNLSPEDTANRLFVGGLPYFLTEPMVKELVEAFGPTKHF 335
Query: 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370
LV DR+TGNSKGYGF VYQD AVTD+AC L+G+KMG+KTLTVRR
Sbjct: 336 MLVMDRETGNSKGYGFFVYQDHAVTDVACQGLHGMKMGEKTLTVRR 381
>gi|255073589|ref|XP_002500469.1| RNA binding protein [Micromonas sp. RCC299]
gi|226515732|gb|ACO61727.1| RNA binding protein [Micromonas sp. RCC299]
Length = 489
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 159/361 (44%), Positives = 202/361 (55%), Gaps = 53/361 (14%)
Query: 112 SGFDMAPP----------------------AAAMLPGAAVPGQLPGVPSAV---PEMAQN 146
+GF APP A + PG V + G PS P N
Sbjct: 47 TGFSDAPPPGFSGADGAVGGAGVPPGMGIGGADIPPGMNV--SVAGAPSGFSGPPPGYAN 104
Query: 147 MLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNS 206
P G L PV QQATRHARRVYVG LP E +A FF+ M AIGG
Sbjct: 105 AHP------GNLGLNPVP--NQQATRHARRVYVGNLPGTVTEPKVAAFFNNAMHAIGGTV 156
Query: 207 AG-PGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAA 265
A PGD V+NVYIN+EKKFAFVE RTVEE SN MALDG + EG+A+RVRRP DYN A+
Sbjct: 157 AALPGDPVLNVYINYEKKFAFVEFRTVEETSNCMALDGAVLEGIAMRVRRPNDYNVMAAS 216
Query: 266 ALGPGQPSPNLNLAAVGL------------ASGAIGGAEGPDRVFVGGLPYYFTETQIKE 313
+LGP QP LNL A+GL A+ ++ + R+F+GGLPY+ TET +KE
Sbjct: 217 SLGPSQPKDGLNLEAIGLNPAAAGGGGAGAANASLTEEDLQHRLFIGGLPYFLTETMVKE 276
Query: 314 LLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT- 372
L+E+FG F LV DR+TGNSKGYGF VYQD +VTD+AC L+G+KMG+K+LTV+RA
Sbjct: 277 LVEAFGPTKQFQLVVDRETGNSKGYGFFVYQDHSVTDVACQGLHGMKMGEKSLTVQRAMQ 336
Query: 373 ASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSL----FGETLAKVLCLTEM 428
+G K S+ ++A +G + G+S+ ++V+ LTEM
Sbjct: 337 GGAGAPKPTAASVGPGHTALPGADEVAAHLAGASGAPAGLSVPPPPSEHPASRVVSLTEM 396
Query: 429 M 429
+
Sbjct: 397 L 397
>gi|302813497|ref|XP_002988434.1| hypothetical protein SELMODRAFT_24180 [Selaginella moellendorffii]
gi|300143836|gb|EFJ10524.1| hypothetical protein SELMODRAFT_24180 [Selaginella moellendorffii]
Length = 339
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 131/231 (56%), Positives = 159/231 (68%), Gaps = 6/231 (2%)
Query: 147 MLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNS 206
+LP G QL MP Q T+ ARRVYVGGLP + +E IATFF+ M I GN+
Sbjct: 3 VLPAGIAQLPVVLRMP---QMPQITKPARRVYVGGLPAVVDEARIATFFNHAMAVIEGNT 59
Query: 207 AGPG-DAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAA 265
G G DAVV+V+I+H K +AFVEMR+VEEASNAMALDGIIFEG VR+RRP++YNP A
Sbjct: 60 YGQGGDAVVSVFIDHAKNYAFVEMRSVEEASNAMALDGIIFEGSQVRIRRPSNYNPEHAM 119
Query: 266 ALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFD 325
G QPSP+L L VGL A A+GPDR+F+GGLPY + + ++++LLE FG L D
Sbjct: 120 LFGSSQPSPSLRLDKVGLVYRA--HADGPDRIFIGGLPYEWGDAEVRQLLEPFGALRALD 177
Query: 326 LVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSG 376
+VKD T SKGYGF VY++PA TD ACAALN + K L V RAT SSG
Sbjct: 178 IVKDSYTRKSKGYGFAVYENPASTDAACAALNQKPLEGKILRVHRATNSSG 228
>gi|302796203|ref|XP_002979864.1| hypothetical protein SELMODRAFT_153568 [Selaginella moellendorffii]
gi|300152624|gb|EFJ19266.1| hypothetical protein SELMODRAFT_153568 [Selaginella moellendorffii]
Length = 325
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 127/221 (57%), Positives = 154/221 (69%), Gaps = 9/221 (4%)
Query: 158 FPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPG-DAVVNV 216
P MP Q T+ ARRVYVGGLP + +E IATFF+ M I GN+ G G DAVV+V
Sbjct: 1 MPQMP------QITKPARRVYVGGLPAVVDEARIATFFNHAMAVIEGNTYGQGGDAVVSV 54
Query: 217 YINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNL 276
+I+H K +AFVEMR+VEEASNAMALDGIIFEG VR+RRP++YNP A G QPSP+L
Sbjct: 55 FIDHAKNYAFVEMRSVEEASNAMALDGIIFEGSQVRIRRPSNYNPEHAMLFGSSQPSPSL 114
Query: 277 NLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSK 336
L VGL A A+GPDR+F+GGLPY + + ++++LLE FG L D+VKD T SK
Sbjct: 115 RLDKVGLVYRA--HADGPDRIFIGGLPYEWGDAEVRQLLEPFGALRALDIVKDSYTRKSK 172
Query: 337 GYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQ 377
GYGF VY++PA TD ACAALN + K L V RAT SSG
Sbjct: 173 GYGFAVYENPASTDAACAALNQKPLEGKILRVHRATNSSGN 213
>gi|412990165|emb|CCO19483.1| predicted protein [Bathycoccus prasinos]
Length = 495
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 126/231 (54%), Positives = 153/231 (66%), Gaps = 25/231 (10%)
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGG----NSAGPGDAVVNVYINHEKKF 224
QATRHARRVYVGG PP +E +A FF+ + A+GG + G + VVNVY+NHEK F
Sbjct: 121 QATRHARRVYVGGFPPNVSEVRVADFFNNALMAVGGIAETQTEGNANPVVNVYMNHEKHF 180
Query: 225 AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLA 284
AFVE R EE SN MALD I F+ +RVRRP DYN A LGP P+ +NL A+GL+
Sbjct: 181 AFVEFRNAEETSNCMALDSISFDSSQLRVRRPNDYNQPAAMKLGPIVPNIKMNLEAIGLS 240
Query: 285 SGAI-------------GGAEG-------PDRVFVGGLPYYFTETQIKELLESFGTLHGF 324
+ + G A G DRVFVGGLPY+ TE QI+ELLE+FG + F
Sbjct: 241 NEVLQRMQSGVASGQNNGNANGSNVADPNEDRVFVGGLPYFLTEAQIRELLEAFGPITRF 300
Query: 325 DLVKDRDTGNSKGYGFCVYQD-PAVTDIACAALNGLKMGDKTLTVRRATAS 374
DLV+DRDTG SKGYGF VY+D PA+TDIA L+G++MGDK LTVRRA A+
Sbjct: 301 DLVRDRDTGGSKGYGFVVYRDGPAITDIAIQGLHGMQMGDKQLTVRRANAT 351
>gi|359497129|ref|XP_003635431.1| PREDICTED: splicing factor U2af large subunit B-like, partial
[Vitis vinifera]
Length = 238
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 116/146 (79%), Positives = 127/146 (86%), Gaps = 2/146 (1%)
Query: 287 AIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDP 346
IGGAEGPDR+FVGGLPYYFTE QI+ELLESFG L GFDLVKDRDTGNSKGYGFCVYQDP
Sbjct: 1 VIGGAEGPDRIFVGGLPYYFTEEQIRELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDP 60
Query: 347 AVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMN 406
AVTDIACAALNGLKMGDKTLTVRRAT SGQ+K+EQ++ILAQAQQHIAIQK+ALQ G+N
Sbjct: 61 AVTDIACAALNGLKMGDKTLTVRRATVGSGQAKSEQDNILAQAQQHIAIQKIALQAGGLN 120
Query: 407 TLGGGMSL--FGETLAKVLCLTEMMK 430
G GM+ ET KVLCLTE++
Sbjct: 121 LPGAGMAFTAIAETPTKVLCLTEVIN 146
>gi|297736736|emb|CBI25913.3| unnamed protein product [Vitis vinifera]
Length = 6467
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 116/146 (79%), Positives = 127/146 (86%), Gaps = 2/146 (1%)
Query: 287 AIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDP 346
IGGAEGPDR+FVGGLPYYFTE QI+ELLESFG L GFDLVKDRDTGNSKGYGFCVYQDP
Sbjct: 6230 VIGGAEGPDRIFVGGLPYYFTEEQIRELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDP 6289
Query: 347 AVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMN 406
AVTDIACAALNGLKMGDKTLTVRRAT SGQ+K+EQ++ILAQAQQHIAIQK+ALQ G+N
Sbjct: 6290 AVTDIACAALNGLKMGDKTLTVRRATVGSGQAKSEQDNILAQAQQHIAIQKIALQAGGLN 6349
Query: 407 TLGGGMSL--FGETLAKVLCLTEMMK 430
G GM+ ET KVLCLTE++
Sbjct: 6350 LPGAGMAFTAIAETPTKVLCLTEVIN 6375
>gi|124360614|gb|ABN08613.1| RNA-binding region RNP-1 (RNA recognition motif) [Medicago
truncatula]
Length = 257
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 128/199 (64%), Positives = 151/199 (75%), Gaps = 6/199 (3%)
Query: 49 RDKNYKYDREGIRDHDRTDRHRDYNRDKERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKS 108
R K Y+R+ RD+DR H DY+RD++ R+R+ + S S R +RS+S S S S S+
Sbjct: 58 RGKYDSYNRQRGRDYDR---HNDYDRDRDTRNRYGAHSKRSRR-ESRSRSRSRSPSQSEG 113
Query: 109 KRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQ 168
KR SGFDMAPPA + P V GQ+PG+ + QN P+G +Q+GA LM VQ MTQ
Sbjct: 114 KRTSGFDMAPPATGVTP--TVSGQMPGIAHMIQGATQNFSPYGISQIGALSLMQVQPMTQ 171
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVE 228
QATRHARRVYVGGLPP ANEQ+IA+FFSQVM AIGGNSAG GD+VVNVYINHEKKFAFVE
Sbjct: 172 QATRHARRVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKKFAFVE 231
Query: 229 MRTVEEASNAMALDGIIFE 247
MRTVEEASNAMALDGI+FE
Sbjct: 232 MRTVEEASNAMALDGIVFE 250
>gi|452823555|gb|EME30564.1| U2 snRNP auxiliary factor large subunit, putative isoform 1
[Galdieria sulphuraria]
Length = 522
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 110/232 (47%), Positives = 153/232 (65%), Gaps = 7/232 (3%)
Query: 148 LPFGATQLGAFPLMPV-QVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNS 206
L F A P+ P Q TQQAT+HARR+YVG LP E +A FF+ + G
Sbjct: 181 LDFSALSQYMIPVAPTTQPNTQQATKHARRLYVGNLPSDVTESEVADFFNSALYLAKGVD 240
Query: 207 AGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAA 266
PGD V +VY+N +K+FAF+E+ + EA+ A+ +DG++F G+++R+RRP DYNP + A
Sbjct: 241 V-PGDPVQSVYLNLDKRFAFIELNSAAEAAAAIQMDGVLFRGMSLRMRRPNDYNPNIHA- 298
Query: 267 LGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326
P P + +A+G+ S + +GPD+VF+GGLPY+ TE QIKE+L S+G L+ F+L
Sbjct: 299 --PVYPPIGFDPSALGVVSTQV--PDGPDKVFIGGLPYHLTEDQIKEILSSYGPLNAFNL 354
Query: 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
VKD +TG SKGY F Y+DP++ + A LNG+ MGDKTLTVRRA+ S S
Sbjct: 355 VKDPNTGLSKGYAFFQYKDPSIVEAAIKGLNGMTMGDKTLTVRRASQVSSGS 406
>gi|325191172|emb|CCA25959.1| splicing factor U2af large subunit putative [Albugo laibachii Nc14]
Length = 553
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 111/205 (54%), Positives = 140/205 (68%), Gaps = 10/205 (4%)
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMT-AIGGNSAGPGDAVVNVYINHEKKFAFV 227
Q TRHARR+YVGG+ + NE I+ FF+ V+ A+G G AVV+VYIN E+ FAFV
Sbjct: 209 QQTRHARRIYVGGIGEV-NETEISAFFNDVIDRALGERQEG--GAVVSVYINRERHFAFV 265
Query: 228 EMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAA-LGPGQPSPNLNLAAVGLASG 286
E++++E + M LDGI F G ++VRRP DYNP L LGP P LNLAA+G+ S
Sbjct: 266 ELKSIELTTACMNLDGIAFRGQPLKVRRPNDYNPGLVPKDLGP---IPALNLAALGIVST 322
Query: 287 AIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDP 346
+ +GP +VF+GG+PY+ TE QIKELL++FG L F LVKD T SKGY FC Y D
Sbjct: 323 TV--QDGPGKVFIGGIPYHLTEEQIKELLQAFGPLKSFHLVKDLTTNLSKGYAFCEYMDS 380
Query: 347 AVTDIACAALNGLKMGDKTLTVRRA 371
VTD AC LN +K+GD+TLTVRRA
Sbjct: 381 GVTDAACIGLNDMKLGDRTLTVRRA 405
>gi|255089803|ref|XP_002506823.1| predicted protein [Micromonas sp. RCC299]
gi|226522096|gb|ACO68081.1| predicted protein [Micromonas sp. RCC299]
Length = 554
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/211 (53%), Positives = 142/211 (67%), Gaps = 6/211 (2%)
Query: 166 MTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAG--PGD---AVVNVYINH 220
+ QATRHARRVYVGG P NE +A+F + + AIGG S P + V++VYIN
Sbjct: 209 INVQATRHARRVYVGGFPDNTNEPELASFIANALVAIGGASGAYDPDNGMTCVLSVYINR 268
Query: 221 EKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
+K FAFVE RTVEEASNAMALDG++ G +RVRRP DY P AA +GP P+ +LNLAA
Sbjct: 269 DKLFAFVEFRTVEEASNAMALDGVVMAGSQLRVRRPNDYQPQQAALIGPTTPADSLNLAA 328
Query: 281 VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGF 340
VGL G G + G +++VG LP Y TE Q+ ELL+SFG + F+LV D+DTG KGYGF
Sbjct: 329 VGLIPGVNGQSSG-RKLYVGNLPPYLTELQVLELLQSFGAVQAFNLVVDKDTGTLKGYGF 387
Query: 341 CVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
Y D A + A L G+++GDK L V+RA
Sbjct: 388 FEYADAAADEAAMEGLTGMRLGDKVLNVKRA 418
>gi|452823554|gb|EME30563.1| U2 snRNP auxiliary factor large subunit, putative isoform 2
[Galdieria sulphuraria]
Length = 538
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 111/247 (44%), Positives = 152/247 (61%), Gaps = 21/247 (8%)
Query: 148 LPFGATQLGAFPLMPV-QVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNS 206
L F A P+ P Q TQQAT+HARR+YVG LP E +A FF+ + G
Sbjct: 181 LDFSALSQYMIPVAPTTQPNTQQATKHARRLYVGNLPSDVTESEVADFFNSALYLAKGVD 240
Query: 207 AGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAA 266
PGD V +VY+N +K+FAF+E+ + EA+ A+ +DG++F G+++R+RRP DYNP + A
Sbjct: 241 V-PGDPVQSVYLNLDKRFAFIELNSAAEAAAAIQMDGVLFRGMSLRMRRPNDYNPNIHAP 299
Query: 267 LGPGQPSPNLNLAA----------VGLASGAIGGA-----EGPDRVFVGGLPYYFTETQI 311
+ P P L +G A+G +GPD+VF+GGLPY+ TE QI
Sbjct: 300 VYP----PVCQLLTCFLGYIEKFQIGFDPSALGVVSTQVPDGPDKVFIGGLPYHLTEDQI 355
Query: 312 KELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
KE+L S+G L+ F+LVKD +TG SKGY F Y+DP++ + A LNG+ MGDKTLTVRRA
Sbjct: 356 KEILSSYGPLNAFNLVKDPNTGLSKGYAFFQYKDPSIVEAAIKGLNGMTMGDKTLTVRRA 415
Query: 372 TASSGQS 378
+ S S
Sbjct: 416 SQVSSGS 422
>gi|303283510|ref|XP_003061046.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457397|gb|EEH54696.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 378
Score = 204 bits (519), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 99/209 (47%), Positives = 138/209 (66%), Gaps = 6/209 (2%)
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVE 228
QATRHARRVYVG L ++ + FF ++M A G G VV+ YIN EK FAF+E
Sbjct: 19 QATRHARRVYVGALTADVDDAHLTQFFEEIMLATGATKRVDGGCVVSTYINREKLFAFIE 78
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGL----- 283
+TVEEASNA+ DG+++ G +R+RRP DYN A+ LGP QP+PNLN +A+G+
Sbjct: 79 FQTVEEASNALGFDGVVYGGQQLRLRRPNDYNIAQASLLGPQQPNPNLNYSAIGINHTPT 138
Query: 284 -ASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
+ + P ++FVGGLP Y TE Q+KEL+ SFG + F+LV D+DTG SKGY F
Sbjct: 139 PMVASTENSTSPYKLFVGGLPNYITENQVKELVCSFGEIKAFNLVFDKDTGLSKGYAFWE 198
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRA 371
+ DP+V++ A L+G+++G+K + V+ A
Sbjct: 199 FLDPSVSEAAIKGLDGMRLGEKLINVKFA 227
>gi|348688506|gb|EGZ28320.1| hypothetical protein PHYSODRAFT_309221 [Phytophthora sojae]
Length = 694
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/205 (51%), Positives = 141/205 (68%), Gaps = 10/205 (4%)
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMT-AIGGNSAGPGDAVVNVYINHEKKFAFV 227
Q TRHARR+YVGG+ ++ E I FF+ V+ A+G G +VV+VYIN E+ FAFV
Sbjct: 351 QQTRHARRLYVGGIGEIS-EPEITAFFNDVIDRALGEKQEG--GSVVSVYINRERHFAFV 407
Query: 228 EMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNP-TLAAALGPGQPSPNLNLAAVGLASG 286
E+RT+E + M LDG+ + G +++RRP DYNP T+ LGP P LNLAA+G+ S
Sbjct: 408 ELRTIELTTACMNLDGVSYNGQPLKIRRPNDYNPATVPKDLGP---IPQLNLAALGIVST 464
Query: 287 AIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDP 346
+ ++GP ++F+GGLPY+ E Q+KELL++FG L F LVK+ + SKGYGFC Y D
Sbjct: 465 TV--SDGPGKIFIGGLPYHLNEEQVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYMDI 522
Query: 347 AVTDIACAALNGLKMGDKTLTVRRA 371
VTD AC LN +++GDKTLTVRRA
Sbjct: 523 NVTDAACLGLNDMRLGDKTLTVRRA 547
>gi|226478958|emb|CAX72974.1| Splicing factor U2AF 65 kDa subunit [Schistosoma japonicum]
Length = 520
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 138/369 (37%), Positives = 190/369 (51%), Gaps = 28/369 (7%)
Query: 74 RDKERRHRHRSRSHSSDRFRNRS------KSLSPSRSPSKS-KRRSGFDMAPPA-AAMLP 125
R+++R H H R HS R R+ S + S RSPS S +D+ PP + P
Sbjct: 81 RERKRSHSHGHRRHSKSRHRDYSGGHKSRRHQSHHRSPSNSVSAHKYWDVPPPGFEHVTP 140
Query: 126 GAAVPGQLPG-VPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPP 184
Q G VP V Q +P A V R ARR+YVG +P
Sbjct: 141 AQYKALQTSGQVPVNVYAAGQVPMPVHAPNAPLTLTTNVPFAGSAVCRQARRLYVGNIPF 200
Query: 185 LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGI 244
A E+ + FF++ M A G A G+ ++ V IN EK FAF+E R+V+E + +ALDG+
Sbjct: 201 TATEENMMEFFNKQMRAQGLIQA-EGNPIIAVQINMEKNFAFLEFRSVDETTQGLALDGV 259
Query: 245 IFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPY 304
+F+ A+++RRP DY P + P P G+ S + + P ++FVGGLP
Sbjct: 260 LFQNQALKLRRPRDYAPLPGVSEQPSVIVP-------GVVSTVV--QDSPHKIFVGGLPN 310
Query: 305 YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK 364
Y E Q+KELL SFG L GF+LVKD TG SKGY FC Y D VTD ACA LNG+++GDK
Sbjct: 311 YLNEDQVKELLLSFGPLKGFNLVKDGSTGLSKGYAFCEYVDSNVTDHACAGLNGMQLGDK 370
Query: 365 TLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLF--GETLAKV 422
L V+RA+ + + L Q +++ A+Q NT G G G +V
Sbjct: 371 KLIVQRASVGAKHTTGVLPQCLLQMS---GLEEGAVQ----NTTGSGNLTVRSGGPPTEV 423
Query: 423 LCLTEMMKS 431
LCL M+++
Sbjct: 424 LCLMNMIET 432
>gi|301117646|ref|XP_002906551.1| splicing factor U2af large subunit, putative [Phytophthora
infestans T30-4]
gi|262107900|gb|EEY65952.1| splicing factor U2af large subunit, putative [Phytophthora
infestans T30-4]
Length = 569
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 104/205 (50%), Positives = 141/205 (68%), Gaps = 10/205 (4%)
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMT-AIGGNSAGPGDAVVNVYINHEKKFAFV 227
Q TRHARR+YVGG+ ++ E I FF+ V+ A+G G +VV+VYIN E+ FAFV
Sbjct: 226 QQTRHARRLYVGGIGEIS-EPEITAFFNDVIDRALGEKQEG--GSVVSVYINRERHFAFV 282
Query: 228 EMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNP-TLAAALGPGQPSPNLNLAAVGLASG 286
E+R++E + M LDG+ + G +++RRP DYNP T+ LGP P LNLAA+G+ S
Sbjct: 283 ELRSIELTTACMNLDGVSYNGQPLKIRRPNDYNPATVPKDLGP---IPQLNLAALGIVST 339
Query: 287 AIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDP 346
+ ++GP ++F+GGLPY+ E Q+KELL++FG L F LVK+ + SKGYGFC Y D
Sbjct: 340 TV--SDGPGKIFIGGLPYHLNEEQVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYMDI 397
Query: 347 AVTDIACAALNGLKMGDKTLTVRRA 371
VTD AC LN +++GDKTLTVRRA
Sbjct: 398 NVTDAACIGLNDMQLGDKTLTVRRA 422
>gi|432908697|ref|XP_004077989.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 2
[Oryzias latipes]
Length = 474
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 134/355 (37%), Positives = 190/355 (53%), Gaps = 29/355 (8%)
Query: 76 KERRHRHRS-RSHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPAAAMLPGAAVPGQLP 134
KERRHR +S H S + SP R K K + +D+ PP + P Q
Sbjct: 57 KERRHRRKSVHLHQSSCLKTSCYVRSPHRE-KKKKIKKYWDVPPPGFEHI----TPMQYK 111
Query: 135 GVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATF 194
+ +A A +LP A PV V+ Q TR ARR+YVG +P E+++ F
Sbjct: 112 AMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDF 171
Query: 195 FSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVR 254
F+ M +GG + PG+ V+ V IN +K FAF+E R+V+E + AMA DGIIF+G ++++R
Sbjct: 172 FNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIR 230
Query: 255 RPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKEL 314
RP DY P PG S N ++ G+ S + + ++F+GGLP Y + Q+KEL
Sbjct: 231 RPHDYQPL------PGM-SENPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKEL 281
Query: 315 LESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374
L SFG L F+LVKD TG SKGY FC Y D + D A A LNG+++GDK L V+RA+
Sbjct: 282 LTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLLVQRASVG 341
Query: 375 SGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
S + + L Q + LQ G+N+ ++ G +VLCL M+
Sbjct: 342 S------KNATLTSINQ----TPVTLQVPGLNS---SVTQMGGLPTEVLCLMNMV 383
>gi|348526424|ref|XP_003450719.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 1
[Oreochromis niloticus]
Length = 475
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 194/357 (54%), Gaps = 32/357 (8%)
Query: 76 KERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRSG---FDMAPPAAAMLPGAAVPGQ 132
KERRHR RS + + ++ L RSP + K++ +D+ PP + P Q
Sbjct: 57 KERRHRRRSVPVCNYIWASKQSKLL--RSPHREKKKKVKKYWDVPPPGFEHI----TPMQ 110
Query: 133 LPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIA 192
+ +A A +LP A PV V+ Q TR ARR+YVG +P E+++
Sbjct: 111 YKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMM 170
Query: 193 TFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR 252
FF+ M +GG + PG+ V+ V IN +K FAF+E R+V+E + AMA DGIIF+G +++
Sbjct: 171 DFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 229
Query: 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIK 312
+RRP DY P PG S N ++ G+ S + + ++F+GGLP Y + Q+K
Sbjct: 230 IRRPHDYQPL------PGM-SENPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVK 280
Query: 313 ELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
ELL SFG L F+LVKD TG SKGY FC Y D + D A A LNG+++GDK L V+RA+
Sbjct: 281 ELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLLVQRAS 340
Query: 373 ASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
S + + L+ Q + LQ G+N+ ++ G +VLCL M+
Sbjct: 341 VGS------KNATLSSINQ----TPVTLQVPGLNS---SVTQMGGLPTEVLCLMNMV 384
>gi|291190480|ref|NP_001167275.1| Splicing factor U2AF 65 kDa subunit [Salmo salar]
gi|223648990|gb|ACN11253.1| Splicing factor U2AF 65 kDa subunit [Salmo salar]
Length = 474
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 135/379 (35%), Positives = 191/379 (50%), Gaps = 75/379 (19%)
Query: 76 KERRHRHRSRSHSSDRFRNRSKSLSPSRSPS-----KSKRRSGFDM-AP----------- 118
KERR RHR S + + +S+ SRSP+ K K R +D+ AP
Sbjct: 55 KERR-RHRR----SIQTQKQSQETVVSRSPALHREKKKKVRKYWDVPAPGFEHITPLQYK 109
Query: 119 --------PAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQA 170
PA A+LP P LP P++VP V+ Q
Sbjct: 110 AMQAAGQIPATALLPTMITPEGLPPAPTSVP-----------------------VVGSQM 146
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN +K FAF+E R
Sbjct: 147 TRQARRLYVGNIPFGITEEAMMDFFNAQM-CLGGLTQAPGNPVLAVQINQDKNFAFLEFR 205
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
+V+E + AMA DGIIF+G ++++RRP DY P + P P G+ S +
Sbjct: 206 SVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSESPSVYVP-------GVVSTVV-- 256
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
+ ++F+GGLP Y + Q+KELL SFG L F+LVKD T SKGY FC Y D + D
Sbjct: 257 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATALSKGYAFCEYVDVNLND 316
Query: 351 IACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGG 410
A A LNG+++GDK L V+RA+ + + ++ Q + +Q L + M +LGG
Sbjct: 317 QAIAGLNGMQLGDKKLLVQRASVGAKNA-----ALTGMNQTPVTLQVPGLMPTSMASLGG 371
Query: 411 GMSLFGETLAKVLCLTEMM 429
+VLCL M+
Sbjct: 372 -------LPTEVLCLMNMV 383
>gi|110741990|dbj|BAE98934.1| splicing factor like protein [Arabidopsis thaliana]
Length = 341
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/149 (70%), Positives = 118/149 (79%), Gaps = 4/149 (2%)
Query: 109 KRRSGFDMAPPAAAMLPGAA-VPGQLPGVPSAVPE--MAQNMLPFGATQ-LGAFPLMPVQ 164
+R SGFDMAPPA+AML A V GQ+P P +P M NM P Q G +MP+Q
Sbjct: 169 QRVSGFDMAPPASAMLAAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQ 228
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF 224
MTQQATRHARRVYVGGL P ANEQ++ATFFSQVM A+GGN+AGPGDAVVNVYINHEKKF
Sbjct: 229 AMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKF 288
Query: 225 AFVEMRTVEEASNAMALDGIIFEGVAVRV 253
AFVEMR+VEEASNAM+LDGIIFEG V+V
Sbjct: 289 AFVEMRSVEEASNAMSLDGIIFEGAPVKV 317
>gi|159487587|ref|XP_001701804.1| U2 snRNP auxiliary factor, large subunit [Chlamydomonas
reinhardtii]
gi|158281023|gb|EDP06779.1| U2 snRNP auxiliary factor, large subunit [Chlamydomonas
reinhardtii]
Length = 309
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 100/202 (49%), Positives = 138/202 (68%), Gaps = 6/202 (2%)
Query: 194 FFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRV 253
FF+Q+M A G + PG V++ ++N++K+FAF+EMR VEE SNAMA DGI +G ++V
Sbjct: 1 FFNQIMMASGATTQ-PGPPVMSCFMNNDKRFAFLEMRCVEETSNAMAFDGIQCQGEVLKV 59
Query: 254 RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKE 313
RRP DYNP A LGP PSP +NLA +G+ + + +GP++V++GGLP +E Q+++
Sbjct: 60 RRPHDYNPAAAKLLGPTDPSPKVNLALLGVINTLV--EDGPNKVYIGGLPACLSEEQVRQ 117
Query: 314 LLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
+L++FGTL F+LV DR+TGNSKGYGFC Y DP+VTD A L+ L + K LT RRA
Sbjct: 118 ILQAFGTLKAFNLVLDRETGNSKGYGFCEYADPSVTDSAIQGLSALIIQGKPLTARRANT 177
Query: 374 SSGQSKTEQESILAQAQQHIAI 395
S+ S T Q I QQ A+
Sbjct: 178 SAETSLTLQTLI---EQQQAAL 196
>gi|348526426|ref|XP_003450720.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 2
[Oreochromis niloticus]
Length = 487
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 135/367 (36%), Positives = 196/367 (53%), Gaps = 40/367 (10%)
Query: 76 KERRHRHRSRSHSSDRFRNRSKSL-----SPS-----RSPSKSKRRSG---FDMAPPAAA 122
KERRHR RS + + ++ L SP RSP + K++ +D+ PP
Sbjct: 57 KERRHRRRSVPVCNYIWASKQSKLLLRQESPHYTGMYRSPHREKKKKVKKYWDVPPPGFE 116
Query: 123 MLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGL 182
+ P Q + +A A +LP A PV V+ Q TR ARR+YVG +
Sbjct: 117 HI----TPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNI 172
Query: 183 PPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALD 242
P E+++ FF+ M +GG + PG+ V+ V IN +K FAF+E R+V+E + AMA D
Sbjct: 173 PFGITEESMMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFD 231
Query: 243 GIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGL 302
GIIF+G ++++RRP DY P PG S N ++ G+ S + + ++F+GGL
Sbjct: 232 GIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVPGVVSTVV--PDSAHKLFIGGL 282
Query: 303 PYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG 362
P Y + Q+KELL SFG L F+LVKD TG SKGY FC Y D + D A A LNG+++G
Sbjct: 283 PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVNLNDQAIAGLNGMQLG 342
Query: 363 DKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKV 422
DK L V+RA+ S + + L+ Q + LQ G+N+ ++ G +V
Sbjct: 343 DKKLLVQRASVGS------KNATLSSINQ----TPVTLQVPGLNS---SVTQMGGLPTEV 389
Query: 423 LCLTEMM 429
LCL M+
Sbjct: 390 LCLMNMV 396
>gi|291241059|ref|XP_002740425.1| PREDICTED: U2 (RNU2) small nuclear RNA auxiliary factor 2-like
[Saccoglossus kowalevskii]
Length = 466
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 179/331 (54%), Gaps = 27/331 (8%)
Query: 101 PSRS--PSKSKRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAF 158
PSRS P + K +D+ PP + P Q + A ++ Q L Q A
Sbjct: 71 PSRSARPKRKKPFMYWDIPPPGFEHI----APLQYKAMQGA-GQIPQTALENQMAQAAAN 125
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
MP+ + Q TR ARR+YVG +P E+A+ FF++ M + A G+ V+ V I
Sbjct: 126 SNMPI--VGSQMTRQARRLYVGNIPFGVTEEAMMDFFNRQMKSFRITQAQ-GNPVLAVQI 182
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
+ K FAF+E R+V+E + AMA DGI+F+G ++++RRP DY P A P P+
Sbjct: 183 DLNKNFAFLEFRSVDETTQAMAFDGILFQGQSLKIRRPKDYQPVPGMAEMPSVHVPDYLF 242
Query: 279 AAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
+ G+ S + + P ++F+GGLP Y E Q+KELL SFG L F+LVKD T SKGY
Sbjct: 243 SPTGVVSTVV--PDSPHKIFIGGLPNYLNEDQVKELLTSFGELKAFNLVKDSATSLSKGY 300
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKM 398
FC Y D +TD A A LNG+++GDK L V+RA+ + ++T Q I ++
Sbjct: 301 AFCEYIDEKITDQAIAGLNGMQLGDKKLIVQRASVGAKNAQTAQ-----------MIAQL 349
Query: 399 ALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+Q G+N G L G T +VLCL M+
Sbjct: 350 NIQVPGVNI---GQGLVGPT-TEVLCLMNMV 376
>gi|302854386|ref|XP_002958701.1| hypothetical protein VOLCADRAFT_121741 [Volvox carteri f.
nagariensis]
gi|300255941|gb|EFJ40221.1| hypothetical protein VOLCADRAFT_121741 [Volvox carteri f.
nagariensis]
Length = 294
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 132/188 (70%), Gaps = 3/188 (1%)
Query: 187 NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIF 246
+E ++ F+ VM A G + PG V++ Y+N+EK+FAF+E R+VEE SNAMA DG+
Sbjct: 2 SEVSLTQLFNNVMMAAGATTQ-PGGPVISCYMNNEKRFAFLEFRSVEETSNAMAFDGLQC 60
Query: 247 EGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYF 306
+G ++VRRP DYNP A LGP +PS +NLA +G+ + + +GP++VFVGGLP Y
Sbjct: 61 QGETLKVRRPHDYNPAAAKLLGPTEPSAKINLALLGVVNTLV--EDGPNKVFVGGLPGYL 118
Query: 307 TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTL 366
+E Q++++L++FG L F+LV DRDTG SKGYGFC Y DP +TD+A L+ L +G K L
Sbjct: 119 SEEQVRQILQAFGPLRAFNLVTDRDTGASKGYGFCEYADPNITDVAIQGLSALIVGGKPL 178
Query: 367 TVRRATAS 374
TVRRA +
Sbjct: 179 TVRRANTA 186
>gi|197692223|dbj|BAG70075.1| U2 small nuclear RNA auxiliary factor 2 isoform b [Homo sapiens]
gi|197692475|dbj|BAG70201.1| U2 small nuclear RNA auxiliary factor 2 isoform b [Homo sapiens]
Length = 471
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 183/335 (54%), Gaps = 40/335 (11%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
RSP K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 78 RSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT- 135
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+
Sbjct: 136 -------PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVL 187
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S
Sbjct: 188 AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SE 240
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
NL++ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG
Sbjct: 241 NLSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 298
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIA 394
SKGY FC Y D VTD A A LNG+++GDK L V+RA+ + + ++ Q +
Sbjct: 299 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNA-----TLSTINQTPVT 353
Query: 395 IQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+Q L +S + +GG + +VLCL M+
Sbjct: 354 LQVPGLMSSQVQ-MGGHPT-------EVLCLMNMV 380
>gi|351710523|gb|EHB13442.1| Splicing factor U2AF 65 kDa subunit [Heterocephalus glaber]
Length = 904
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 183/337 (54%), Gaps = 27/337 (8%)
Query: 93 RNRSKSLSPSRSPSKSKRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGA 152
R ++S R K K R +D+ PP + P Q + +A A +LP
Sbjct: 144 RTAAQSCRSPRHEKKKKVRKYWDVPPPGFEHI----TPMQYKAMQAAGQIPATALLPTMT 199
Query: 153 TQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDA 212
A PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+
Sbjct: 200 PDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNP 258
Query: 213 VVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP 272
V+ V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG
Sbjct: 259 VLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM- 311
Query: 273 SPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
S N ++ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD T
Sbjct: 312 SENPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT 369
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQH 392
G SKGY FC Y D VTD A A LNG+++GDK L V+RA+ + + ++ Q
Sbjct: 370 GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNA-----TLSTINQTP 424
Query: 393 IAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ +Q L +S + +GG + +VLCL M+
Sbjct: 425 VTLQVPGLMSSQVQ-MGGHPT-------EVLCLMNMV 453
>gi|71480064|ref|NP_001025127.1| U2 small nuclear RNA auxiliary factor 2a [Danio rerio]
gi|68533572|gb|AAH98548.1| U2 small nuclear RNA auxiliary factor 2a [Danio rerio]
Length = 465
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 175/316 (55%), Gaps = 26/316 (8%)
Query: 114 FDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRH 173
+D+ PP + P Q + +A A +LP + A PV V+ Q TR
Sbjct: 85 WDVPPPGFEHI----TPMQYKAMQAAGQIPATALLPTMTPEGLAVTPTPVPVVGSQMTRQ 140
Query: 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVE 233
ARR+YVG +P E+++ FF+ M +GG + PG+ V+ V IN +K FAF+E R+V+
Sbjct: 141 ARRLYVGNIPFGITEESMMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVD 199
Query: 234 EASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEG 293
E + AMA DGIIF+G ++++RRP DY P PG S N ++ G+ S + +
Sbjct: 200 ETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVPGVVSTVV--PDS 250
Query: 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 353
++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY FC Y D ++D A
Sbjct: 251 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVNISDQAI 310
Query: 354 AALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMS 413
A LNG+++GDK L V+RA+ S + ++ Q + +Q L S +N +GG
Sbjct: 311 AGLNGMQLGDKKLLVQRASVGSKNT-----TLTGINQTPVTLQVPGLMNSSVNQMGG--- 362
Query: 414 LFGETLAKVLCLTEMM 429
+VLCL M+
Sbjct: 363 ----IPTEVLCLMNMV 374
>gi|432908699|ref|XP_004077990.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 3
[Oryzias latipes]
Length = 479
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 133/354 (37%), Positives = 189/354 (53%), Gaps = 31/354 (8%)
Query: 76 KERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPAAAMLPGAAVPGQLPG 135
KERRHR S + + S SP R K K + +D+ PP + P Q
Sbjct: 66 KERRHRRNSPPAYP---QENTASRSPHRE-KKKKIKKYWDVPPPGFEHI----TPMQYKA 117
Query: 136 VPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFF 195
+ +A A +LP A PV V+ Q TR ARR+YVG +P E+++ FF
Sbjct: 118 MQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFF 177
Query: 196 SQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRR 255
+ M +GG + PG+ V+ V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RR
Sbjct: 178 NAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR 236
Query: 256 PTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELL 315
P DY P PG S N ++ G+ S + + ++F+GGLP Y + Q+KELL
Sbjct: 237 PHDYQPL------PGM-SENPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELL 287
Query: 316 ESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
SFG L F+LVKD TG SKGY FC Y D + D A A LNG+++GDK L V+RA+ S
Sbjct: 288 TSFGPLKAFNLVKDSATGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLLVQRASVGS 347
Query: 376 GQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ + L Q + LQ G+N+ ++ G +VLCL M+
Sbjct: 348 ------KNATLTSINQ----TPVTLQVPGLNS---SVTQMGGLPTEVLCLMNMV 388
>gi|355756173|gb|EHH59920.1| hypothetical protein EGM_10153, partial [Macaca fascicularis]
Length = 442
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 138/392 (35%), Positives = 197/392 (50%), Gaps = 55/392 (14%)
Query: 63 HDRTDRHRDYNRDKERRHRHRSRSHSSDRFRNRSKSLSPS-----------------RSP 105
H R++ R +E R+ + S FR+ +S+ P RSP
Sbjct: 10 HAHILHMRNFWRSRESRYGVFETNLKS--FRSAPRSVFPKQYKPLTRGAKEEHGGLIRSP 67
Query: 106 ---SKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQLGA 157
K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 68 RHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT---- 122
Query: 158 FPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V
Sbjct: 123 ----PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQ 177
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLN 277
IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N +
Sbjct: 178 INQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPS 230
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
+ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKG
Sbjct: 231 VYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 288
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQK 397
Y FC Y D VTD A A LNG+++GDK L V+RA+ + + + L I
Sbjct: 289 YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA------KNATLVSPPSTINQTP 342
Query: 398 MALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ LQ G+ + M G +VLCL M+
Sbjct: 343 VTLQVPGLMSSQVQM---GGHPTEVLCLMNMV 371
>gi|410351437|gb|JAA42322.1| U2 small nuclear RNA auxiliary factor 2 [Pan troglodytes]
Length = 475
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 128/330 (38%), Positives = 178/330 (53%), Gaps = 26/330 (7%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFP 159
RSP K K R +D+ PP + P Q + +A A +LP A
Sbjct: 78 RSPRHEKKKKVRKYWDVPPPGFEHI----TPMQYKAMQAAGQIPATALLPTMTPDGLAVT 133
Query: 160 LMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN 219
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN
Sbjct: 134 PTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQIN 192
Query: 220 HEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLA 279
+K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++
Sbjct: 193 QDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVY 245
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY
Sbjct: 246 VPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYA 303
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMA 399
FC Y D VTD A A LNG+++GDK L V+RA+ + + + L I +
Sbjct: 304 FCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA------KNATLVSPPSTINQTPVT 357
Query: 400 LQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
LQ G+ + M G +VLCL M+
Sbjct: 358 LQVPGLMSSQVQM---GGHPTEVLCLMNMV 384
>gi|355703931|gb|EHH30422.1| hypothetical protein EGK_11092, partial [Macaca mulatta]
Length = 453
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 138/392 (35%), Positives = 197/392 (50%), Gaps = 55/392 (14%)
Query: 63 HDRTDRHRDYNRDKERRHRHRSRSHSSDRFRNRSKSLSPS-----------------RSP 105
H R++ R +E R+ + S FR+ +S+ P RSP
Sbjct: 10 HAHILHMRNFWRSRESRYGVFETNLKS--FRSAPRSVFPKQYKPLTRGAKEEHGGLIRSP 67
Query: 106 ---SKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQLGA 157
K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 68 RHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT---- 122
Query: 158 FPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V
Sbjct: 123 ----PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQ 177
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLN 277
IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N +
Sbjct: 178 INQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPS 230
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
+ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKG
Sbjct: 231 VYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 288
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQK 397
Y FC Y D VTD A A LNG+++GDK L V+RA+ + + + L I
Sbjct: 289 YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA------KNATLVSPPSTINQTP 342
Query: 398 MALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ LQ G+ + M G +VLCL M+
Sbjct: 343 VTLQVPGLMSSQVQM---GGHPTEVLCLMNMV 371
>gi|417410850|gb|JAA51891.1| Putative splicing factor u2af large subunit rrm superfamily,
partial [Desmodus rotundus]
Length = 455
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 126/336 (37%), Positives = 182/336 (54%), Gaps = 37/336 (11%)
Query: 99 LSPSRSPSKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGAT 153
+ P R K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 61 IRPPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT 119
Query: 154 QLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAV 213
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V
Sbjct: 120 --------PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPV 170
Query: 214 VNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPS 273
+ V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S
Sbjct: 171 LAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-S 223
Query: 274 PNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG 333
N ++ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG
Sbjct: 224 ENPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG 281
Query: 334 NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHI 393
SKGY FC Y D VTD A A LNG+++GDK L V+RA+ + + ++ Q +
Sbjct: 282 LSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA-----KNATLSTINQTPV 336
Query: 394 AIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+Q L +S + +GG + +VLCL M+
Sbjct: 337 TLQVPGLMSSQVQ-MGGHPT-------EVLCLMNMV 364
>gi|1334149|emb|CAA45875.1| unnamed protein product [Mus musculus]
Length = 492
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 128/330 (38%), Positives = 178/330 (53%), Gaps = 26/330 (7%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFP 159
RSP K K R +D+ PP + P Q + +A A +LP A
Sbjct: 95 RSPRHEKKKKVRKYWDVPPPGFEHI----TPMQYKAMQAAGQIPATALLPTMTPDGLAVT 150
Query: 160 LMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN 219
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN
Sbjct: 151 PTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQIN 209
Query: 220 HEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLA 279
+K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++
Sbjct: 210 QDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVY 262
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY
Sbjct: 263 VPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYA 320
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMA 399
FC Y D VTD A A LNG+++GDK L V+RA+ + + + L I +
Sbjct: 321 FCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA------KNATLVSLPSTINQTPVT 374
Query: 400 LQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
LQ G+ + M G +VLCL M+
Sbjct: 375 LQVPGLMSSQVQM---GGHPTEVLCLMNMV 401
>gi|327365322|ref|NP_001192160.1| splicing factor U2AF 65 kDa subunit isoform 1 [Mus musculus]
gi|348551789|ref|XP_003461711.1| PREDICTED: splicing factor U2AF 65 kDa subunit isoform 2 [Cavia
porcellus]
gi|392343893|ref|XP_003748811.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Rattus norvegicus]
gi|136628|sp|P26369.3|U2AF2_MOUSE RecName: Full=Splicing factor U2AF 65 kDa subunit; AltName: Full=U2
auxiliary factor 65 kDa subunit; AltName: Full=U2 snRNP
auxiliary factor large subunit
gi|55101|emb|CAA45874.1| splicing factor U2AF [Mus musculus]
gi|26347321|dbj|BAC37309.1| unnamed protein product [Mus musculus]
Length = 475
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 179/335 (53%), Gaps = 36/335 (10%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
RSP K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 78 RSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT- 135
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+
Sbjct: 136 -------PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVL 187
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S
Sbjct: 188 AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SE 240
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
N ++ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG
Sbjct: 241 NPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 298
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIA 394
SKGY FC Y D VTD A A LNG+++GDK L V+RA+ + + + L I
Sbjct: 299 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA------KNATLVSLPSTIN 352
Query: 395 IQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ LQ G+ + M G +VLCL M+
Sbjct: 353 QTPVTLQVPGLMSSQVQM---GGHPTEVLCLMNMV 384
>gi|384939340|gb|AFI33275.1| splicing factor U2AF 65 kDa subunit isoform a [Macaca mulatta]
Length = 475
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 179/335 (53%), Gaps = 36/335 (10%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
RSP K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 78 RSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT- 135
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+
Sbjct: 136 -------PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVL 187
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S
Sbjct: 188 AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SE 240
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
N ++ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG
Sbjct: 241 NPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 298
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIA 394
SKGY FC Y D VTD A A LNG+++GDK L V+RA+ + + + L I
Sbjct: 299 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA------KNATLVSPPSTIN 352
Query: 395 IQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ LQ G+ + M G +VLCL M+
Sbjct: 353 QTPVTLQVPGLMSSQVQM---GGHPTEVLCLMNMV 384
>gi|6005926|ref|NP_009210.1| splicing factor U2AF 65 kDa subunit isoform a [Homo sapiens]
gi|267188|sp|P26368.4|U2AF2_HUMAN RecName: Full=Splicing factor U2AF 65 kDa subunit; AltName: Full=U2
auxiliary factor 65 kDa subunit; Short=hU2AF(65);
Short=hU2AF65; AltName: Full=U2 snRNP auxiliary factor
large subunit
gi|37545|emb|CAA45409.1| splicing factor U2AF [Homo sapiens]
gi|380783065|gb|AFE63408.1| splicing factor U2AF 65 kDa subunit isoform a [Macaca mulatta]
gi|410212804|gb|JAA03621.1| U2 small nuclear RNA auxiliary factor 2 [Pan troglodytes]
gi|410260574|gb|JAA18253.1| U2 small nuclear RNA auxiliary factor 2 [Pan troglodytes]
gi|410291504|gb|JAA24352.1| U2 small nuclear RNA auxiliary factor 2 [Pan troglodytes]
Length = 475
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 179/335 (53%), Gaps = 36/335 (10%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
RSP K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 78 RSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT- 135
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+
Sbjct: 136 -------PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVL 187
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S
Sbjct: 188 AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SE 240
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
N ++ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG
Sbjct: 241 NPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 298
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIA 394
SKGY FC Y D VTD A A LNG+++GDK L V+RA+ + + + L I
Sbjct: 299 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA------KNATLVSPPSTIN 352
Query: 395 IQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ LQ G+ + M G +VLCL M+
Sbjct: 353 QTPVTLQVPGLMSSQVQM---GGHPTEVLCLMNMV 384
>gi|228543|prf||1805352A splicing factor U2AF:SUBUNIT=large
Length = 475
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 179/335 (53%), Gaps = 36/335 (10%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
RSP K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 78 RSPLHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT- 135
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+
Sbjct: 136 -------PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVL 187
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S
Sbjct: 188 AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SE 240
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
N ++ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG
Sbjct: 241 NPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 298
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIA 394
SKGY FC Y D VTD A A LNG+++GDK L V+RA+ + + + L I
Sbjct: 299 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA------KNATLVSPPSTIN 352
Query: 395 IQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ LQ G+ + M G +VLCL M+
Sbjct: 353 QTPVTLQVPGLMSSQVQM---GGHPTEVLCLMNMV 384
>gi|115496604|ref|NP_001068804.1| splicing factor U2AF 65 kDa subunit [Bos taurus]
gi|89994093|gb|AAI14161.1| U2 small nuclear RNA auxiliary factor 2 [Bos taurus]
gi|296477253|tpg|DAA19368.1| TPA: U2 (RNU2) small nuclear RNA auxiliary factor 2 [Bos taurus]
Length = 475
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 179/335 (53%), Gaps = 36/335 (10%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
RSP K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 78 RSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT- 135
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+
Sbjct: 136 -------PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVL 187
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S
Sbjct: 188 AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SE 240
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
N ++ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG
Sbjct: 241 NPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 298
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIA 394
SKGY FC Y D VTD A A LNG+++GDK L V+RA+ + + + L I
Sbjct: 299 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA------KNATLVSPLSTIN 352
Query: 395 IQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ LQ G+ + M G +VLCL M+
Sbjct: 353 QTPVTLQVPGLMSSQVQM---GGHPTEVLCLMNMV 384
>gi|410351435|gb|JAA42321.1| U2 small nuclear RNA auxiliary factor 2 [Pan troglodytes]
Length = 471
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 181/330 (54%), Gaps = 30/330 (9%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFP 159
RSP K K R +D+ PP + P Q + +A A +LP A
Sbjct: 78 RSPRHEKKKKVRKYWDVPPPGFEHI----TPMQYKAMQAAGQIPATALLPTMTPDGLAVT 133
Query: 160 LMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN 219
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN
Sbjct: 134 PTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQIN 192
Query: 220 HEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLA 279
+K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++
Sbjct: 193 QDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVY 245
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY
Sbjct: 246 VPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYA 303
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMA 399
FC Y D VTD A A LNG+++GDK L V+RA+ + + ++ Q + +Q
Sbjct: 304 FCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNA-----TLSTINQTPVTLQVPG 358
Query: 400 LQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
L +S + +GG + +VLCL M+
Sbjct: 359 LMSSQVQ-MGGHPT-------EVLCLMNMV 380
>gi|45387787|ref|NP_991252.1| U2 small nuclear RNA auxiliary factor 2b [Danio rerio]
gi|41389016|gb|AAH65869.1| U2 small nuclear RNA auxiliary factor 2b [Danio rerio]
Length = 475
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 132/357 (36%), Positives = 190/357 (53%), Gaps = 36/357 (10%)
Query: 76 KERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPAAAMLPGAAVPGQLPG 135
KERRHR RS + + S SP R K K + +D+ PP + P Q
Sbjct: 61 KERRHR---RSDHTQNHPQENVSRSPHRE-KKKKIKKYWDVPPPGFEHI----TPMQYKA 112
Query: 136 VPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFF 195
+ +A A +LP A PV V+ Q TR ARR+YVG +P E+++ FF
Sbjct: 113 MQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFF 172
Query: 196 SQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRR 255
+ M +GG + PG+ V+ V IN +K FAF+E R+V+E + AMA DGIIF+ ++++RR
Sbjct: 173 NAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQAQSLKIRR 231
Query: 256 PTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPD---RVFVGGLPYYFTETQIK 312
P DY P PG S N ++ G+ S + PD ++F+GGLP Y + Q+K
Sbjct: 232 PHDYQPL------PGM-SENPSVYVPGVVSTVV-----PDSIHKLFIGGLPNYLNDDQVK 279
Query: 313 ELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
ELL SFG L F+LVKD TG SKGY FC Y D V D A A LNG+++ DK L V+RA+
Sbjct: 280 ELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVNVNDQAIAGLNGMQLADKKLLVQRAS 339
Query: 373 ASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ + ++ + + + +Q L ++ M +GG +VLCL M+
Sbjct: 340 VGAKNA-----TMTSINETPVTLQVPGLTSNPMIQMGG-------IPTEVLCLMNMV 384
>gi|410982179|ref|XP_003997437.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Felis catus]
Length = 471
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 126/336 (37%), Positives = 182/336 (54%), Gaps = 37/336 (11%)
Query: 99 LSPSRSPSKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGAT 153
+S R K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 77 ISLPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT 135
Query: 154 QLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAV 213
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V
Sbjct: 136 --------PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPV 186
Query: 214 VNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPS 273
+ V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S
Sbjct: 187 LAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-S 239
Query: 274 PNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG 333
N ++ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG
Sbjct: 240 ENPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG 297
Query: 334 NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHI 393
SKGY FC Y D VTD A A LNG+++GDK L V+RA+ + + ++ Q +
Sbjct: 298 LSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNA-----TLSTINQTPV 352
Query: 394 AIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+Q L +S + +GG + +VLCL M+
Sbjct: 353 TLQVPGLMSSQVQ-MGGHPT-------EVLCLMNMV 380
>gi|297277970|ref|XP_001091568.2| PREDICTED: splicing factor U2AF 65 kDa subunit [Macaca mulatta]
Length = 471
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 179/335 (53%), Gaps = 36/335 (10%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
RSP K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 74 RSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT- 131
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+
Sbjct: 132 -------PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVL 183
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S
Sbjct: 184 AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SE 236
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
N ++ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG
Sbjct: 237 NPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 294
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIA 394
SKGY FC Y D VTD A A LNG+++GDK L V+RA+ + + + L I
Sbjct: 295 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA------KNATLVSPPSTIN 348
Query: 395 IQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ LQ G+ + M G +VLCL M+
Sbjct: 349 QTPVTLQVPGLMSSQVQM---GGHPTEVLCLMNMV 380
>gi|60279268|ref|NP_001012496.1| splicing factor U2AF 65 kDa subunit isoform b [Homo sapiens]
gi|164565377|ref|NP_598432.2| splicing factor U2AF 65 kDa subunit isoform 2 [Mus musculus]
gi|109461136|ref|XP_001060115.1| PREDICTED: splicing factor U2AF 65 kDa subunit isoform 6 [Rattus
norvegicus]
gi|338709958|ref|XP_001496159.3| PREDICTED: splicing factor U2AF 65 kDa subunit [Equus caballus]
gi|348551787|ref|XP_003461710.1| PREDICTED: splicing factor U2AF 65 kDa subunit isoform 1 [Cavia
porcellus]
gi|359318549|ref|XP_003638845.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Canis lupus
familiaris]
gi|395861318|ref|XP_003802936.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Otolemur garnettii]
gi|397471087|ref|XP_003807136.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Pan paniscus]
gi|403308602|ref|XP_003944746.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Saimiri boliviensis
boliviensis]
gi|14250571|gb|AAH08740.1| U2 small nuclear RNA auxiliary factor 2 [Homo sapiens]
gi|27695339|gb|AAH43071.1| U2af2 protein [Mus musculus]
gi|39644972|gb|AAH30574.1| U2 small nuclear RNA auxiliary factor 2 [Homo sapiens]
gi|119592810|gb|EAW72404.1| U2 (RNU2) small nuclear RNA auxiliary factor 2, isoform CRA_c [Homo
sapiens]
gi|148699339|gb|EDL31286.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2,
isoform CRA_a [Mus musculus]
gi|149016700|gb|EDL75886.1| similar to U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform b
[Rattus norvegicus]
gi|261858294|dbj|BAI45669.1| U2 small nuclear RNA auxiliary factor 2 [synthetic construct]
gi|325463253|gb|ADZ15397.1| U2 small nuclear RNA auxiliary factor 2 [synthetic construct]
gi|380783067|gb|AFE63409.1| splicing factor U2AF 65 kDa subunit isoform b [Macaca mulatta]
gi|389618965|gb|AFK92990.1| U2 small nuclear RNA auxiliary factor 2 [Sus scrofa]
gi|410212802|gb|JAA03620.1| U2 small nuclear RNA auxiliary factor 2 [Pan troglodytes]
gi|410260572|gb|JAA18252.1| U2 small nuclear RNA auxiliary factor 2 [Pan troglodytes]
gi|410291502|gb|JAA24351.1| U2 small nuclear RNA auxiliary factor 2 [Pan troglodytes]
gi|431902970|gb|ELK09152.1| Splicing factor U2AF 65 kDa subunit [Pteropus alecto]
Length = 471
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 127/335 (37%), Positives = 182/335 (54%), Gaps = 40/335 (11%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
RSP K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 78 RSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT- 135
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+
Sbjct: 136 -------PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVL 187
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S
Sbjct: 188 AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SE 240
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
N ++ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG
Sbjct: 241 NPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 298
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIA 394
SKGY FC Y D VTD A A LNG+++GDK L V+RA+ + + ++ Q +
Sbjct: 299 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNA-----TLSTINQTPVT 353
Query: 395 IQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+Q L +S + +GG + +VLCL M+
Sbjct: 354 LQVPGLMSSQVQ-MGGHPT-------EVLCLMNMV 380
>gi|344270173|ref|XP_003406920.1| PREDICTED: LOW QUALITY PROTEIN: splicing factor U2AF 65 kDa
subunit-like [Loxodonta africana]
Length = 471
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 127/335 (37%), Positives = 182/335 (54%), Gaps = 40/335 (11%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
RSP K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 78 RSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT- 135
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+
Sbjct: 136 -------PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVL 187
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S
Sbjct: 188 AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SE 240
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
N ++ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG
Sbjct: 241 NPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 298
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIA 394
SKGY FC Y D VTD A A LNG+++GDK L V+RA+ + + ++ Q +
Sbjct: 299 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNA-----TLSTINQTPVT 353
Query: 395 IQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+Q L +S + +GG + +VLCL M+
Sbjct: 354 LQVPGLMSSQVQ-MGGHPT-------EVLCLMNMV 380
>gi|384939342|gb|AFI33276.1| splicing factor U2AF 65 kDa subunit isoform b [Macaca mulatta]
Length = 471
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 127/335 (37%), Positives = 182/335 (54%), Gaps = 40/335 (11%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
RSP K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 78 RSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT- 135
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+
Sbjct: 136 -------PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVL 187
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S
Sbjct: 188 AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SE 240
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
N ++ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG
Sbjct: 241 NPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 298
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIA 394
SKGY FC Y D VTD A A LNG+++GDK L V+RA+ + + ++ Q +
Sbjct: 299 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNA-----TLSTINQTPVT 353
Query: 395 IQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+Q L +S + +GG + +VLCL M+
Sbjct: 354 LQVPGLMSSQVQ-MGGHPT-------EVLCLMNMV 380
>gi|301782083|ref|XP_002926459.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Ailuropoda
melanoleuca]
Length = 496
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 127/335 (37%), Positives = 182/335 (54%), Gaps = 40/335 (11%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
RSP K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 103 RSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT- 160
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+
Sbjct: 161 -------PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVL 212
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S
Sbjct: 213 AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SE 265
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
N ++ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG
Sbjct: 266 NPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 323
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIA 394
SKGY FC Y D VTD A A LNG+++GDK L V+RA+ + + ++ Q +
Sbjct: 324 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNA-----TLSTINQTPVT 378
Query: 395 IQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+Q L +S + +GG + +VLCL M+
Sbjct: 379 LQVPGLMSSQVQ-MGGHPT-------EVLCLMNMV 405
>gi|297302956|ref|XP_001119590.2| PREDICTED: splicing factor U2AF 65 kDa subunit-like, partial
[Macaca mulatta]
Length = 432
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 127/335 (37%), Positives = 182/335 (54%), Gaps = 40/335 (11%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
RSP K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 78 RSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT- 135
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+
Sbjct: 136 -------PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVL 187
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S
Sbjct: 188 AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SE 240
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
N ++ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG
Sbjct: 241 NPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 298
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIA 394
SKGY FC Y D VTD A A LNG+++GDK L V+RA+ + + ++ Q +
Sbjct: 299 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNA-----TLSTINQTPVT 353
Query: 395 IQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+Q L +S + +GG + +VLCL M+
Sbjct: 354 LQVPGLMSSQVQ-MGGHPT-------EVLCLMNMV 380
>gi|147902896|ref|NP_001080595.1| U2 small nuclear RNA auxiliary factor 2 [Xenopus laevis]
gi|111185517|gb|AAH44032.2| U2af2 protein [Xenopus laevis]
Length = 456
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 124/328 (37%), Positives = 179/328 (54%), Gaps = 37/328 (11%)
Query: 107 KSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLM 161
K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 70 KKKIRKYWDIPPPGFEHITPLQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT-------- 120
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN +
Sbjct: 121 PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQD 179
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++
Sbjct: 180 KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVP 232
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY FC
Sbjct: 233 GVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 290
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQ 401
Y D VTD A A LNG+++GDK L V+RA+ + + ++ Q + +Q L
Sbjct: 291 EYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNA-----TLSTINQTPVTLQVPGLM 345
Query: 402 TSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+S + +GG + +VLCL M+
Sbjct: 346 SSQVQ-MGGHPT-------EVLCLMNMV 365
>gi|444724150|gb|ELW64768.1| Splicing factor U2AF 65 kDa subunit [Tupaia chinensis]
Length = 447
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 125/332 (37%), Positives = 180/332 (54%), Gaps = 37/332 (11%)
Query: 103 RSPSKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQLGA 157
R K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 57 RHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT---- 111
Query: 158 FPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V
Sbjct: 112 ----PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQ 166
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLN 277
IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N +
Sbjct: 167 INQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPS 219
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
+ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKG
Sbjct: 220 VYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 277
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQK 397
Y FC Y D VTD A A LNG+++GDK L V+RA+ + + ++ Q + +Q
Sbjct: 278 YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNA-----TLSTINQTPVTLQV 332
Query: 398 MALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
L +S + +GG + +VLCL M+
Sbjct: 333 PGLMSSQVQ-MGGHPT-------EVLCLMNMV 356
>gi|440900150|gb|ELR51345.1| Splicing factor U2AF 65 kDa subunit, partial [Bos grunniens mutus]
Length = 411
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 127/335 (37%), Positives = 182/335 (54%), Gaps = 40/335 (11%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
RSP K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 17 RSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT- 74
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+
Sbjct: 75 -------PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVL 126
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S
Sbjct: 127 AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SE 179
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
N ++ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG
Sbjct: 180 NPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 237
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIA 394
SKGY FC Y D VTD A A LNG+++GDK L V+RA+ + + ++ Q +
Sbjct: 238 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA-----KNATLSTINQTPVT 292
Query: 395 IQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+Q L +S + +GG + +VLCL M+
Sbjct: 293 LQVPGLMSSQVQ-MGGHPT-------EVLCLMNMV 319
>gi|47575746|ref|NP_001001217.1| U2 small nuclear RNA auxiliary factor 2 isoform 2 [Xenopus
(Silurana) tropicalis]
gi|45709722|gb|AAH67966.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2
[Xenopus (Silurana) tropicalis]
Length = 456
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 124/328 (37%), Positives = 179/328 (54%), Gaps = 37/328 (11%)
Query: 107 KSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLM 161
K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 70 KKKIRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT-------- 120
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN +
Sbjct: 121 PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQD 179
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++
Sbjct: 180 KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVP 232
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY FC
Sbjct: 233 GVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 290
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQ 401
Y D VTD A A LNG+++GDK L V+RA+ + + ++ Q + +Q L
Sbjct: 291 EYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNA-----TLSTINQTPVTLQVPGLM 345
Query: 402 TSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+S + +GG + +VLCL M+
Sbjct: 346 SSQVQ-MGGHPT-------EVLCLMNMV 365
>gi|63101571|gb|AAH94451.1| U2af2 protein, partial [Mus musculus]
Length = 403
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 127/335 (37%), Positives = 182/335 (54%), Gaps = 40/335 (11%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
RSP K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 10 RSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT- 67
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+
Sbjct: 68 -------PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVL 119
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S
Sbjct: 120 AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SE 172
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
N ++ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG
Sbjct: 173 NPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 230
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIA 394
SKGY FC Y D VTD A A LNG+++GDK L V+RA+ + + ++ Q +
Sbjct: 231 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA-----KNATLSTINQTPVT 285
Query: 395 IQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+Q L +S + +GG + +VLCL M+
Sbjct: 286 LQVPGLMSSQVQ-MGGHPT-------EVLCLMNMV 312
>gi|390479436|ref|XP_002762565.2| PREDICTED: splicing factor U2AF 65 kDa subunit [Callithrix jacchus]
Length = 453
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 124/328 (37%), Positives = 179/328 (54%), Gaps = 37/328 (11%)
Query: 107 KSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLM 161
K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 70 KKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT-------- 120
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN +
Sbjct: 121 PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQD 179
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++
Sbjct: 180 KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVP 232
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY FC
Sbjct: 233 GVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 290
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQ 401
Y D VTD A A LNG+++GDK L V+RA+ + + ++ Q + +Q L
Sbjct: 291 EYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNA-----TLSTINQTPVTLQVPGLM 345
Query: 402 TSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+S + +GG + +VLCL M+
Sbjct: 346 SSQVQ-MGGHPT-------EVLCLMNMV 365
>gi|327280715|ref|XP_003225097.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 1
[Anolis carolinensis]
Length = 456
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 124/328 (37%), Positives = 179/328 (54%), Gaps = 37/328 (11%)
Query: 107 KSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLM 161
K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 70 KKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT-------- 120
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN +
Sbjct: 121 PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQD 179
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++
Sbjct: 180 KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVP 232
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY FC
Sbjct: 233 GVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 290
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQ 401
Y D VTD A A LNG+++GDK L V+RA+ + + ++ Q + +Q L
Sbjct: 291 EYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNA-----TLSTINQTPVTLQVPGLM 345
Query: 402 TSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+S + +GG + +VLCL M+
Sbjct: 346 SSQVQ-MGGHPT-------EVLCLMNMV 365
>gi|119592808|gb|EAW72402.1| U2 (RNU2) small nuclear RNA auxiliary factor 2, isoform CRA_a [Homo
sapiens]
Length = 376
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 173/311 (55%), Gaps = 22/311 (7%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFP 159
RSP K K R +D+ PP + P Q + +A A +LP A
Sbjct: 78 RSPRHEKKKKVRKYWDVPPPGFEHI----TPMQYKAMQAAGQIPATALLPTMTPDGLAVT 133
Query: 160 LMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN 219
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN
Sbjct: 134 PTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQIN 192
Query: 220 HEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLA 279
+K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++
Sbjct: 193 QDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVY 245
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY
Sbjct: 246 VPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYA 303
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMA 399
FC Y D VTD A A LNG+++GDK L V+RA+ + + ++++ QH
Sbjct: 304 FCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNA-----TLVSPPAQHHQSDACD 358
Query: 400 LQTSGMNTLGG 410
++G++ L G
Sbjct: 359 PASAGLDELPG 369
>gi|348510223|ref|XP_003442645.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 3
[Oreochromis niloticus]
Length = 467
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 142/395 (35%), Positives = 204/395 (51%), Gaps = 46/395 (11%)
Query: 46 DRRRDKNYKYDREGIRDHDRTDRHRDYNRDKERRHRHRSRSHSSDRFRNRSKSLSPSRSP 105
DR R+++ K R G R D+HR +++D+ R R + + R+R S +
Sbjct: 18 DRERERHKKRSRSG--SPGRGDKHRSWSKDRGSRSREKRSRSRDRKSRDRRSSSRDHKKH 75
Query: 106 SKSKRRS-------GFDMAPPAAAMLPGAAVPGQLPGVPSA--VPEMAQNMLPFGATQLG 156
S S RR+ +D+ PP + P Q + +A +P +A +L T
Sbjct: 76 SHSPRRTRKKRTCKYWDVPPPGFEHI----TPMQYKAMQAAGQIPTIA--LLATSTTTGV 129
Query: 157 AFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV 216
A V ++ Q TR ARR+YVG +P E+++A FF+ M + G S P + V+ V
Sbjct: 130 AAAPTQVPIVGSQMTRQARRLYVGNIPFGVTEESMAEFFNAQMR-LAGLSQAPSNPVLAV 188
Query: 217 YINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNL 276
IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P + P P
Sbjct: 189 QINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYRPLPGISEQPAFHVP-- 246
Query: 277 NLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSK 336
G+ S + + P ++F+GGLP Y + Q+KELL SFG L F+LVKD T SK
Sbjct: 247 -----GVVSTVV--PDSPHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATSLSK 299
Query: 337 GYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQ--AQQHIA 394
GY FC Y D + TD A A LNG+++GDK L V+R AS G SI+ Q
Sbjct: 300 GYAFCEYVDISATDQAVAGLNGMQLGDKKLIVQR--ASVGAKNANPTSIIETPVTLQVPG 357
Query: 395 IQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+Q+ LQ SGM T +VLCL M+
Sbjct: 358 LQR--LQNSGMPT-------------EVLCLLNMV 377
>gi|354486866|ref|XP_003505598.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Cricetulus
griseus]
gi|344242983|gb|EGV99086.1| Splicing factor U2AF 65 kDa subunit [Cricetulus griseus]
Length = 469
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 126/324 (38%), Positives = 181/324 (55%), Gaps = 29/324 (8%)
Query: 107 KSKRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQ-LGAFPLMPVQV 165
K K R +D+ PP + P Q + +A A +LP + L A P MPV V
Sbjct: 83 KKKVRKYWDVPPPGFEHI----TPMQYKAMQAAGQIPATALLPTVTSDGLVASP-MPVPV 137
Query: 166 MTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFA 225
+ Q TR ARR+YVG +P E+A+ FF+ M +G + PG+ V+ V IN EK FA
Sbjct: 138 VGSQMTRQARRLYVGNIPFGITEEAMKDFFNAQM-QLGVLTQVPGNPVLAVQINQEKNFA 196
Query: 226 FVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLAS 285
F+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++ G+ S
Sbjct: 197 FLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVPGVVS 249
Query: 286 GAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQD 345
+ + ++F+GG+P Y + ++KELL SFGTL F+LVKD TG SKGY FC Y D
Sbjct: 250 TVV--PDSAHKLFIGGMPSYLNDDKVKELLTSFGTLKAFNLVKDSATGLSKGYAFCEYLD 307
Query: 346 PAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGM 405
TD A A LNG+++GDK L V+RA+ S + ++ Q + +Q L +S +
Sbjct: 308 INATDQAIAGLNGMQLGDKKLIVQRASVGSKNA-----TLSTINQTPVTVQVPGLMSSQV 362
Query: 406 NTLGGGMSLFGETLAKVLCLTEMM 429
+GG + +VLCL M+
Sbjct: 363 Q-MGGHPT-------EVLCLMNMV 378
>gi|410905623|ref|XP_003966291.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Takifugu
rubripes]
Length = 458
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 166/299 (55%), Gaps = 32/299 (10%)
Query: 131 GQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQA 190
GQ+P + +P M + L T PV V+ Q TR ARR+YVG +P E++
Sbjct: 101 GQIPAT-ALLPTMTPDGLAVTPT--------PVPVVGSQMTRQARRLYVGNIPFGITEES 151
Query: 191 IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250
+ FF+ M +GG + PG+ V+ V IN +K FAF+E R+V+E + AMA DGIIF+G +
Sbjct: 152 MMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 210
Query: 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQ 310
+++RRP DY P PG S N ++ G+ S + + ++F+GGLP Y + Q
Sbjct: 211 LKIRRPHDYQPL------PGM-SENPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQ 261
Query: 311 IKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370
+KELL SFG L F+LVKD TG SKGY FC Y D + D A A LNG+++GDK L V+R
Sbjct: 262 VKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLLVQR 321
Query: 371 ATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
A+ S Q I + LQ G+N+ ++ G +VLCL M+
Sbjct: 322 ASXXXXXS----------FQTSINQTPVTLQVPGLNS---SVTQMGGVPTEVLCLMNMV 367
>gi|47221657|emb|CAF97922.1| unnamed protein product [Tetraodon nigroviridis]
Length = 458
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 168/299 (56%), Gaps = 32/299 (10%)
Query: 131 GQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQA 190
GQ+P + +P M + L T PV V+ Q TR ARR+YVG +P E++
Sbjct: 101 GQIPAT-ALLPTMTPDGLAVTPT--------PVPVVGSQMTRQARRLYVGNIPFGITEES 151
Query: 191 IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250
+ FF+ M +GG + PG+ V+ V IN +K FAF+E R+V+E + AMA DGIIF+G +
Sbjct: 152 MMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 210
Query: 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQ 310
+++RRP DY P PG S N ++ G+ S + + ++F+GGLP Y + Q
Sbjct: 211 LKIRRPHDYQPL------PGM-SENPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQ 261
Query: 311 IKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370
+KELL SFG L F+LVKD TG SKGY FC Y D + D A A LNG+++GDK L V+R
Sbjct: 262 VKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLLVQR 321
Query: 371 ATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
A+ S + + L Q + LQ G+N+ ++ G +VLCL M+
Sbjct: 322 ASVGS------KNATLTSINQ----TPVTLQVPGLNS---SVTQMGGVPTEVLCLMNMV 367
>gi|119592809|gb|EAW72403.1| U2 (RNU2) small nuclear RNA auxiliary factor 2, isoform CRA_b [Homo
sapiens]
Length = 356
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 116/281 (41%), Positives = 160/281 (56%), Gaps = 27/281 (9%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
RSP K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 78 RSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT- 135
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+
Sbjct: 136 -------PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVL 187
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S
Sbjct: 188 AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SE 240
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
N ++ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG
Sbjct: 241 NPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 298
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
SKGY FC Y D VTD A A LNG+++GDK L V+RA+ +
Sbjct: 299 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 339
>gi|148699340|gb|EDL31287.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2,
isoform CRA_b [Mus musculus]
Length = 356
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 116/281 (41%), Positives = 160/281 (56%), Gaps = 27/281 (9%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
RSP K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 78 RSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT- 135
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+
Sbjct: 136 -------PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVL 187
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S
Sbjct: 188 AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SE 240
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
N ++ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG
Sbjct: 241 NPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 298
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
SKGY FC Y D VTD A A LNG+++GDK L V+RA+ +
Sbjct: 299 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 339
>gi|348526428|ref|XP_003450721.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 3
[Oreochromis niloticus]
Length = 458
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 169/299 (56%), Gaps = 32/299 (10%)
Query: 131 GQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQA 190
GQ+P + +P M + L T PV V+ Q TR ARR+YVG +P E++
Sbjct: 101 GQIPAT-ALLPTMTPDGLAVTPT--------PVPVVGSQMTRQARRLYVGNIPFGITEES 151
Query: 191 IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250
+ FF+ M +GG + PG+ V+ V IN +K FAF+E R+V+E + AMA DGIIF+G +
Sbjct: 152 MMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 210
Query: 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQ 310
+++RRP DY P PG S N ++ G+ S + + ++F+GGLP Y + Q
Sbjct: 211 LKIRRPHDYQPL------PGM-SENPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQ 261
Query: 311 IKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370
+KELL SFG L F+LVKD TG SKGY FC Y D + D A A LNG+++GDK L V+R
Sbjct: 262 VKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLLVQR 321
Query: 371 ATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
A+ S + + L+ Q + LQ G+N+ ++ G +VLCL M+
Sbjct: 322 ASVGS------KNATLSSINQ----TPVTLQVPGLNS---SVTQMGGLPTEVLCLMNMV 367
>gi|344277364|ref|XP_003410472.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Loxodonta
africana]
Length = 471
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 133/405 (32%), Positives = 196/405 (48%), Gaps = 37/405 (9%)
Query: 25 RSRTGERGRDRHHRDFKSGGDDRRRDKNYKYDREGIRDHDRTDRHRDYNRDKERRHRHRS 84
+S+ G +RH + +S R RD+ + R+HD+ R+ R R RS
Sbjct: 13 KSKHGREEENRHRK--RSHSHSRNRDRKRRSQSRDRRNHDQ--------RNDPRDQRRRS 62
Query: 85 RSHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMA 144
+ S D R + +R K K +D+ PP + P Q + +A A
Sbjct: 63 KPWSRDAEEERGGLIPSARHDRKRKVHKYWDVPPPGFEHI----TPMQYKAMQAAGQIPA 118
Query: 145 QNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGG 204
LP A PV + Q TR ARR+YVG +P E+A+ FF+ + +G
Sbjct: 119 TAFLPTMTPDGLAMIPTPVPMGGSQMTRKARRLYVGNIPFGITEEAMMDFFN-IQMRLGV 177
Query: 205 NSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLA 264
+ PG+ ++ V IN +K FAF+E R+V+E + A ALDGIIF+G ++++RRP DY P +
Sbjct: 178 LTQAPGNPILAVQINQDKNFAFLEFRSVDETTQATALDGIIFQGQSLKIRRPHDYQPLPS 237
Query: 265 AALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324
S NL+ G+AS + ++ ++F+ GLP Y + Q+KELL SFG L F
Sbjct: 238 M-------SENLSAYMAGVASTVVPDSD--HKLFIEGLPTYLNDDQVKELLTSFGPLKAF 288
Query: 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQES 384
LVKD TG SKGY C Y D TD A A LNG+++GDK L V R + + +
Sbjct: 289 SLVKDSATGLSKGYAVCEYVDINDTDQATAGLNGMQLGDKKLLVLRGSVGAKNGTLSTIN 348
Query: 385 ILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ Q ++ +Q G T +VLCL M+
Sbjct: 349 QVPVTPQVPGLRSSQVQMGGHPT-------------EVLCLMNMV 380
>gi|299470773|emb|CBN79819.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 636
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 94/206 (45%), Positives = 139/206 (67%), Gaps = 6/206 (2%)
Query: 167 TQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAF 226
+ Q TRHARR+Y+GG P E+ +++FF++V+ G AV +VY++ EK FAF
Sbjct: 239 SNQQTRHARRLYIGGCPK-TTEEEMSSFFNEVINR-ALEYPIDGGAVASVYVSQEKAFAF 296
Query: 227 VEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASG 286
+E++T+E A++ + LDGI+++ +++RRP+DYNP L A P P LNL+ +G+ S
Sbjct: 297 LELKTMELATSVLELDGIVYKETQLKMRRPSDYNPQLVPAAS--GPIPKLNLSVLGIISS 354
Query: 287 AIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDP 346
+ ++ ++VF+GGLPY TE Q++ELL +FG L F LV+D + SKGYGFC Y +
Sbjct: 355 TVPDSD--NKVFIGGLPYNLTEDQVRELLSAFGPLKSFHLVRDPGSPTSKGYGFCEYLNA 412
Query: 347 AVTDIACAALNGLKMGDKTLTVRRAT 372
VT IAC L+G+ +GDKTLTVR AT
Sbjct: 413 GVTAIACEGLHGMTLGDKTLTVRPAT 438
>gi|195999450|ref|XP_002109593.1| hypothetical protein TRIADDRAFT_21652 [Trichoplax adhaerens]
gi|190587717|gb|EDV27759.1| hypothetical protein TRIADDRAFT_21652 [Trichoplax adhaerens]
Length = 476
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 145/241 (60%), Gaps = 14/241 (5%)
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVE 228
Q TR +RR+YVG +P EQA+ FF++ M G A GD V+ V IN +K FAF+E
Sbjct: 148 QITRQSRRLYVGNIPFGITEQAMMDFFNEKMVTTGLTQAN-GDPVLAVQINFDKNFAFLE 206
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
R++EE +NAMA DGI+F+ A+++RRP DY P G P+ + N+ G+ S +
Sbjct: 207 FRSIEETTNAMAFDGIMFQNQALKIRRPKDYQPPT------GDPNSSANIHVPGVISTVV 260
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
+ P ++F+GGLP Y TE Q+KELL+SFG L F+LVKD TG SKGY FC Y V
Sbjct: 261 --PDTPHKLFIGGLPNYLTEDQVKELLQSFGELKAFNLVKDSATGLSKGYAFCEYVVVEV 318
Query: 349 TDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTL 408
TD A A LN +++G+K L V+RA+ + + S+ + + +Q LQ S N L
Sbjct: 319 TDQAIAGLNNMQLGEKKLVVQRASVGAKHNY----SVRCLSGIPVTVQVPGLQISN-NAL 373
Query: 409 G 409
G
Sbjct: 374 G 374
>gi|358338608|dbj|GAA57078.1| splicing factor U2AF large subunit [Clonorchis sinensis]
Length = 518
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/262 (42%), Positives = 147/262 (56%), Gaps = 19/262 (7%)
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEM 229
R ARR+YVG +P A E+ + FF++ M A G A G ++ V IN EK FAF+E
Sbjct: 184 VCRQARRLYVGNIPFTATEENMMEFFNKQMRAQGLVQAE-GSPIIAVQINMEKNFAFLEF 242
Query: 230 RTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIG 289
R+V+E + +ALDGI+F A+++RRP DY P + P P G+ S +
Sbjct: 243 RSVDETTQGLALDGILFHNQALKLRRPRDYAPLPGVSETPSVIVP-------GVVSTVV- 294
Query: 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
+ P +VFVGGLP Y E Q+KELL SFG L GF+LVKD TG SKGY FC Y DP VT
Sbjct: 295 -QDSPHKVFVGGLPNYLNEDQVKELLLSFGPLKGFNLVKDGSTGLSKGYAFCEYVDPNVT 353
Query: 350 DIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLG 409
D ACA LNG+++GDK L V+RA+ + + T L Q + +Q NT G
Sbjct: 354 DHACAGLNGMQLGDKKLIVQRASVGAKHNATTAAPALLQLP---GLTDTLVQ----NTTG 406
Query: 410 GGMSLF--GETLAKVLCLTEMM 429
G G +VLCL M+
Sbjct: 407 TGNITIRSGGPPTEVLCLMNMI 428
>gi|357155772|ref|XP_003577233.1| PREDICTED: splicing factor U2af large subunit B-like [Brachypodium
distachyon]
Length = 446
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/150 (64%), Positives = 111/150 (74%), Gaps = 7/150 (4%)
Query: 113 GFDMAPPAA----AMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQ 168
GFD+ P +A P P QLPG S++P M NMLPF Q + P Q MTQ
Sbjct: 141 GFDLGPTSAQAVVPQFPTIPAPSQLPG--SSIPGMFPNMLPFAVGQFNPLVMQP-QAMTQ 197
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVE 228
QATRHARRVYVGGLPP ANEQ++A +F+QVM AIGGN+AGPGDAV+NVYINH+KKFAFVE
Sbjct: 198 QATRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVE 257
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTD 258
MR+VEEASNAMALDGI+FEG V+ TD
Sbjct: 258 MRSVEEASNAMALDGILFEGAPVKDLNVTD 287
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 57/88 (64%), Gaps = 13/88 (14%)
Query: 344 QDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTS 403
+D VTDIACAALNG+KMGDKTLTVRRA S Q + EQE+IL QAQQ + +QK+ Q
Sbjct: 281 KDLNVTDIACAALNGIKMGDKTLTVRRANQGSAQPRPEQENILLQAQQQVQLQKLVYQVG 340
Query: 404 GMNTLGGGMSLFGETLAKVLCLTEMMKS 431
+ T KV+CLT+++ +
Sbjct: 341 ALPT-------------KVICLTQVVTA 355
>gi|226483519|emb|CAX74060.1| Splicing factor U2AF 65 kDa subunit [Schistosoma japonicum]
gi|226483521|emb|CAX74061.1| Splicing factor U2AF 65 kDa subunit [Schistosoma japonicum]
Length = 518
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 130/359 (36%), Positives = 181/359 (50%), Gaps = 36/359 (10%)
Query: 76 KERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPAAAMLPGAAVPGQLPG 135
K +RH R RS SS + + P GF+ PA A+ GQ
Sbjct: 105 KSKRHHSRHRSASSPTLVYKYWDVPPP----------GFEHVTPAQYKALQAS--GQ--- 149
Query: 136 VPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFF 195
+P V Q +P A V R ARR+YVG +P A E+ + FF
Sbjct: 150 IPVNVYAAGQVPMPVHAPNAPLTLTTNVPFAGSAVCRQARRLYVGNIPFTATEENMMEFF 209
Query: 196 SQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRR 255
++ M A G A G+ ++ V IN EK FAF+E R+V+E + +ALDG++F+ A+++RR
Sbjct: 210 NKQMRAQGLIQA-EGNPIIAVQINMEKNFAFLEFRSVDETTQGLALDGVLFQNQALKLRR 268
Query: 256 PTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELL 315
P DY P + P P G+ S + + P ++FVGGLP Y E Q+KELL
Sbjct: 269 PRDYAPLPGVSEQPSVIVP-------GVVSTVV--QDSPHKIFVGGLPNYLNEDQVKELL 319
Query: 316 ESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
SFG L GF+LVKD TG SKGY FC Y D VTD ACA LNG+++GDK L V+RA+ +
Sbjct: 320 LSFGPLKGFNLVKDGSTGLSKGYAFCEYVDANVTDHACAGLNGMQLGDKKLIVQRASVGA 379
Query: 376 GQSKTEQESILAQAQQHI-AIQKMALQTSGMNTLGGGMSLF--GETLAKVLCLTEMMKS 431
+ +L Q + ++ +Q NT G G G +VLCL M+++
Sbjct: 380 KHTT----GVLPQTLLSLPGLEDGTVQ----NTTGSGNITIRSGGPPTEVLCLMNMIET 430
>gi|256074204|ref|XP_002573416.1| splicing factor u2af large subunit [Schistosoma mansoni]
gi|238658595|emb|CAZ29648.1| splicing factor u2af large subunit, putative [Schistosoma mansoni]
Length = 521
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 130/359 (36%), Positives = 181/359 (50%), Gaps = 36/359 (10%)
Query: 76 KERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPAAAMLPGAAVPGQLPG 135
K +RH R RS SS + + P GF+ PA A+ GQ
Sbjct: 108 KSKRHHSRHRSASSPTLVYKYWDVPPP----------GFEHVTPAQYKALQAS--GQ--- 152
Query: 136 VPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFF 195
+P V Q +P A V R ARR+YVG +P A E+ + FF
Sbjct: 153 IPVNVYAAGQVPMPVHAPNAPLTLTTNVPFAGSAVCRQARRLYVGNIPFTATEENMMEFF 212
Query: 196 SQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRR 255
++ M A G A G+ ++ V IN EK FAF+E R+V+E + +ALDG++F+ A+++RR
Sbjct: 213 NKQMRAQGLIQA-EGNPIIAVQINMEKNFAFLEFRSVDETTQGLALDGVLFQNQALKLRR 271
Query: 256 PTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELL 315
P DY P + P P G+ S + + P ++FVGGLP Y E Q+KELL
Sbjct: 272 PRDYAPLPGVSEQPSVIVP-------GVVSTVV--QDSPHKIFVGGLPNYLNEDQVKELL 322
Query: 316 ESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
SFG L GF+LVKD TG SKGY FC Y D VTD ACA LNG+++GDK L V+RA+ +
Sbjct: 323 LSFGPLKGFNLVKDGSTGLSKGYAFCEYVDANVTDHACAGLNGMQLGDKKLIVQRASVGA 382
Query: 376 GQSKTEQESILAQAQQHI-AIQKMALQTSGMNTLGGGMSLF--GETLAKVLCLTEMMKS 431
+ +L Q + ++ +Q NT G G G +VLCL M+++
Sbjct: 383 KHTT----GVLPQTLLSLPGLEDGTVQ----NTTGSGNITIRSGGPPTEVLCLMNMIET 433
>gi|71022561|ref|XP_761510.1| hypothetical protein UM05363.1 [Ustilago maydis 521]
gi|46101379|gb|EAK86612.1| hypothetical protein UM05363.1 [Ustilago maydis 521]
Length = 727
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 136/214 (63%), Gaps = 11/214 (5%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
P ++ Q A R ARR+YVG + ANEQ I FF++ M + + PG+ V+ +N +
Sbjct: 340 PAELAAQNANRQARRLYVGNITHQANEQNIVAFFNEQMLKLKLGTE-PGEPAVSAQVNVD 398
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K +AFVE R EEA+NAM+ DGI+F+ ++++RRP DY GP P+ N+
Sbjct: 399 KGYAFVEFRHPEEATNAMSFDGIVFQAQSLKIRRPKDYT-------GPDIRPPS-NIHVP 450
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
G+ S + + P ++FVGGLP Y + Q+ ELL++FG L F+LVKD TG SKG+ FC
Sbjct: 451 GVISTNV--PDSPHKIFVGGLPTYLNDDQVIELLQAFGELRAFNLVKDTGTGASKGFAFC 508
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
Y DPA+TD+AC LNG+++GD+ L V+RA+ S
Sbjct: 509 EYVDPALTDLACQGLNGMELGDRNLVVQRASVGS 542
>gi|156404394|ref|XP_001640392.1| predicted protein [Nematostella vectensis]
gi|156227526|gb|EDO48329.1| predicted protein [Nematostella vectensis]
Length = 332
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 109/260 (41%), Positives = 151/260 (58%), Gaps = 22/260 (8%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
TR ARR+YVG +P E + FF+ M N+A PG+ V+ IN E+ FAF+E+R
Sbjct: 2 TRQARRLYVGNIPFGVTENLMIEFFNAKMKEAKLNTA-PGNPVIAAQINTEQNFAFIELR 60
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
+VEE + AMA DGII +G A+++RRP DY P PG S N ++ G+ S +
Sbjct: 61 SVEETTQAMAFDGIILQGQALKIRRPKDYQPI------PGM-SENASVHVPGVVSTVV-- 111
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
+ P ++F+GGLP Y E Q+KELL SFG L F+LVKD TG SKGY FC Y D +TD
Sbjct: 112 PDSPHKIFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITD 171
Query: 351 IACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGG 410
+A LNG+++GDK L V+RA+ + Q+ QA + Q LQ G++
Sbjct: 172 VAIQGLNGMQLGDKKLIVQRASVGAKQNLNN-----PQAMNMVPAQ---LQIPGLDI--- 220
Query: 411 GMSLFGETLA-KVLCLTEMM 429
M++ G A +VL L M+
Sbjct: 221 SMAVPGAVAATEVLALMNMV 240
>gi|384246661|gb|EIE20150.1| hypothetical protein COCSUDRAFT_30785 [Coccomyxa subellipsoidea
C-169]
Length = 212
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 91/202 (45%), Positives = 132/202 (65%), Gaps = 3/202 (1%)
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEM 229
A R ARR+YVGGLPP + + + +++M + GG A G + + I EK +AF+E
Sbjct: 6 AARPARRIYVGGLPPETTDADLRQYINELMVSTGG-CAATGYPIASCKIYTEKSYAFLEF 64
Query: 230 RTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIG 289
R+VEEASN MA DG+ F+ +RVRRP +Y+ +A LGP P P ++++ + + +
Sbjct: 65 RSVEEASNCMAFDGVAFKDSYLRVRRPNNYDINVAVMLGPTDPDPTMDVSNLDIVKTVV- 123
Query: 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
+ P ++F+GGLP +TE Q+KELL FG+L F+LV D++TGNSKGY FC YQD +T
Sbjct: 124 -QDSPHKLFIGGLPCDWTEDQVKELLLPFGSLKAFNLVMDKNTGNSKGYAFCEYQDIGLT 182
Query: 350 DIACAALNGLKMGDKTLTVRRA 371
D LNG ++G+K LTV+RA
Sbjct: 183 DYVIQNLNGKQIGNKFLTVKRA 204
>gi|348510219|ref|XP_003442643.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 1
[Oreochromis niloticus]
Length = 466
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 136/376 (36%), Positives = 195/376 (51%), Gaps = 44/376 (11%)
Query: 65 RTDRHRDYNRDKERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRS-------GFDMA 117
R D+HR +++D+ R R + + R+R S + S S RR+ +D+
Sbjct: 34 RGDKHRSWSKDRGSRSREKRSRSRDRKSRDRRSSSRDHKKHSHSPRRTRKKRTCKYWDVP 93
Query: 118 PPAAAMLPGAAVPGQLPGVPSA--VPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHAR 175
PP + P Q + +A +P +A +L T A V ++ Q TR AR
Sbjct: 94 PPGFEHI----TPMQYKAMQAAGQIPTIA--LLATSTTTGVAAAPTQVPIVGSQMTRQAR 147
Query: 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEA 235
R+YVG +P E+++A FF+ M + G S P + V+ V IN +K FAF+E R+V+E
Sbjct: 148 RLYVGNIPFGVTEESMAEFFNAQMR-LAGLSQAPSNPVLAVQINQDKNFAFLEFRSVDET 206
Query: 236 SNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPD 295
+ AMA DGIIF+G ++++RRP DY P + P P G+ S + + P
Sbjct: 207 TQAMAFDGIIFQGQSLKIRRPHDYRPLPGISEQPAFHVP-------GVVSTVV--PDSPH 257
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++F+GGLP Y + Q+KELL SFG L F+LVKD T SKGY FC Y D + TD A A
Sbjct: 258 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATSLSKGYAFCEYVDISATDQAVAG 317
Query: 356 LNGLKMGDKTLTVRRATASSGQSKTEQESILAQ--AQQHIAIQKMALQTSGMNTLGGGMS 413
LNG+++GDK L V+R AS G SI+ Q +Q+ LQ SGM T
Sbjct: 318 LNGMQLGDKKLIVQR--ASVGAKNANPTSIIETPVTLQVPGLQR--LQNSGMPT------ 367
Query: 414 LFGETLAKVLCLTEMM 429
+VLCL M+
Sbjct: 368 -------EVLCLLNMV 376
>gi|410903105|ref|XP_003965034.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 2
[Takifugu rubripes]
Length = 454
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/268 (40%), Positives = 153/268 (57%), Gaps = 27/268 (10%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEK 222
V V+ Q TR ARR+YVG +P E+++A FF+ M + G S P + V+ V IN +K
Sbjct: 123 VPVVGSQMTRQARRLYVGNIPFGVTEESMAEFFNAQMR-LAGLSQAPSNPVLAVQINQDK 181
Query: 223 KFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVG 282
FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P + P P G
Sbjct: 182 NFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYRPLPGISEQPVFHVP-------G 234
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
+ S + + P ++F+GGLP Y + Q+KELL SFG L F+LVKD T SKGY FC
Sbjct: 235 VVSTVV--PDSPHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATSLSKGYAFCE 292
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMA-LQ 401
Y D + TD A A LNG+++GDK L V+RA+ +K S + +A + + + LQ
Sbjct: 293 YVDVSATDQAVAGLNGMQLGDKKLIVQRASVG---AKNANPSAIIEAPVTLQVPGLQRLQ 349
Query: 402 TSGMNTLGGGMSLFGETLAKVLCLTEMM 429
SGM T +VLCL M+
Sbjct: 350 NSGMPT-------------EVLCLLNMV 364
>gi|410903103|ref|XP_003965033.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 1
[Takifugu rubripes]
Length = 446
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/268 (40%), Positives = 153/268 (57%), Gaps = 27/268 (10%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEK 222
V V+ Q TR ARR+YVG +P E+++A FF+ M + G S P + V+ V IN +K
Sbjct: 115 VPVVGSQMTRQARRLYVGNIPFGVTEESMAEFFNAQMR-LAGLSQAPSNPVLAVQINQDK 173
Query: 223 KFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVG 282
FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P + P P G
Sbjct: 174 NFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYRPLPGISEQPVFHVP-------G 226
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
+ S + + P ++F+GGLP Y + Q+KELL SFG L F+LVKD T SKGY FC
Sbjct: 227 VVSTVV--PDSPHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATSLSKGYAFCE 284
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMA-LQ 401
Y D + TD A A LNG+++GDK L V+RA+ +K S + +A + + + LQ
Sbjct: 285 YVDVSATDQAVAGLNGMQLGDKKLIVQRASVG---AKNANPSAIIEAPVTLQVPGLQRLQ 341
Query: 402 TSGMNTLGGGMSLFGETLAKVLCLTEMM 429
SGM T +VLCL M+
Sbjct: 342 NSGMPT-------------EVLCLLNMV 356
>gi|410903107|ref|XP_003965035.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 3
[Takifugu rubripes]
Length = 461
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/268 (40%), Positives = 153/268 (57%), Gaps = 27/268 (10%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEK 222
V V+ Q TR ARR+YVG +P E+++A FF+ M + G S P + V+ V IN +K
Sbjct: 130 VPVVGSQMTRQARRLYVGNIPFGVTEESMAEFFNAQMR-LAGLSQAPSNPVLAVQINQDK 188
Query: 223 KFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVG 282
FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P + P P G
Sbjct: 189 NFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYRPLPGISEQPVFHVP-------G 241
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
+ S + + P ++F+GGLP Y + Q+KELL SFG L F+LVKD T SKGY FC
Sbjct: 242 VVSTVV--PDSPHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATSLSKGYAFCE 299
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMA-LQ 401
Y D + TD A A LNG+++GDK L V+RA+ +K S + +A + + + LQ
Sbjct: 300 YVDVSATDQAVAGLNGMQLGDKKLIVQRASVG---AKNANPSAIIEAPVTLQVPGLQRLQ 356
Query: 402 TSGMNTLGGGMSLFGETLAKVLCLTEMM 429
SGM T +VLCL M+
Sbjct: 357 NSGMPT-------------EVLCLLNMV 371
>gi|327280717|ref|XP_003225098.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 2
[Anolis carolinensis]
Length = 467
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 125/339 (36%), Positives = 179/339 (52%), Gaps = 48/339 (14%)
Query: 107 KSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLM 161
K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 70 KKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT-------- 120
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN +
Sbjct: 121 PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQD 179
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++
Sbjct: 180 KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVP 232
Query: 282 GLASGAIGGAEGPDRVFVGGLPYY-----------FTETQIKELLESFGTLHGFDLVKDR 330
G+ S + + ++F+GGLP Y F Q+KELL SFG L F+LVKD
Sbjct: 233 GVVSTVV--PDSAHKLFIGGLPNYLNDDQVMFLPPFLSCQVKELLTSFGPLKAFNLVKDS 290
Query: 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQ 390
TG SKGY FC Y D VTD A A LNG+++GDK L V+RA+ + + ++ Q
Sbjct: 291 ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNA-----TLSTINQ 345
Query: 391 QHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ +Q L +S + +GG + +VLCL M+
Sbjct: 346 TPVTLQVPGLMSSQVQ-MGGHPT-------EVLCLMNMV 376
>gi|62859443|ref|NP_001016998.1| U2 small nuclear RNA auxiliary factor 2 isoform 1 [Xenopus
(Silurana) tropicalis]
gi|89269799|emb|CAJ83531.1| U2 (RNU2) small nuclear RNA auxiliary factor 2 [Xenopus (Silurana)
tropicalis]
gi|115292148|gb|AAI22001.1| U2 small nuclear RNA auxiliary factor 2 [Xenopus (Silurana)
tropicalis]
Length = 465
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 124/337 (36%), Positives = 179/337 (53%), Gaps = 46/337 (13%)
Query: 107 KSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLM 161
K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 70 KKKIRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT-------- 120
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN +
Sbjct: 121 PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQD 179
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++
Sbjct: 180 KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVP 232
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQI---------KELLESFGTLHGFDLVKDRDT 332
G+ S + + ++F+GGLP Y + Q+ KELL SFG L F+LVKD T
Sbjct: 233 GVVSTVV--PDSAHKLFIGGLPNYLNDDQVTMESLSLWVKELLTSFGPLKAFNLVKDSAT 290
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQH 392
G SKGY FC Y D VTD A A LNG+++GDK L V+RA+ + + ++ Q
Sbjct: 291 GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNA-----TLSTINQTP 345
Query: 393 IAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ +Q L +S + +GG + +VLCL M+
Sbjct: 346 VTLQVPGLMSSQVQ-MGGHPT-------EVLCLMNMV 374
>gi|348510221|ref|XP_003442644.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 2
[Oreochromis niloticus]
Length = 467
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 132/375 (35%), Positives = 194/375 (51%), Gaps = 41/375 (10%)
Query: 65 RTDRHRDYNRDKERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRS-------GFDMA 117
R D+HR +++D+ R R + + R+R S + S S RR+ +D+
Sbjct: 34 RGDKHRSWSKDRGSRSREKRSRSRDRKSRDRRSSSRDHKKHSHSPRRTRKKRTCKYWDVP 93
Query: 118 PPAAAMLPGAAVPGQLPGVPSA--VPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHAR 175
PP + P Q + +A +P +A +L T A V ++ Q TR AR
Sbjct: 94 PPGFEHI----TPMQYKAMQAAGQIPTIA--LLATSTTTGVAAAPTQVPIVGSQMTRQAR 147
Query: 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEA 235
R+YVG +P E+++A FF+ M + G S P + V+ V IN +K FAF+E R+V+E
Sbjct: 148 RLYVGNIPFGVTEESMAEFFNAQMR-LAGLSQAPSNPVLAVQINQDKNFAFLEFRSVDET 206
Query: 236 SNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPD 295
+ AMA DGIIF+G ++++RRP DY P + P P G+ S + + P
Sbjct: 207 TQAMAFDGIIFQGQSLKIRRPHDYRPLPGISEQPAFHVP-------GVVSTVV--PDSPH 257
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++F+GGLP Y + Q+KELL SFG L F+LVKD T SKGY FC Y D + TD A A
Sbjct: 258 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATSLSKGYAFCEYVDISATDQAVAG 317
Query: 356 LNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHI-AIQKMALQTSGMNTLGGGMSL 414
LNG+++GDK L V+RA+ + + S + +Q+ LQ SGM T
Sbjct: 318 LNGMQLGDKKLIVQRASVGAKNANPVSTSGNTPVTLQVPGLQR--LQNSGMPT------- 368
Query: 415 FGETLAKVLCLTEMM 429
+VLCL M+
Sbjct: 369 ------EVLCLLNMV 377
>gi|309271453|ref|XP_003085312.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Mus musculus]
Length = 730
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 123/329 (37%), Positives = 173/329 (52%), Gaps = 29/329 (8%)
Query: 103 RSPS--KSKRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPL 160
RSP K K R +D+ PP + P Q + +A +A +LP A
Sbjct: 338 RSPCHEKKKVRKYWDVPPPGFEHV----TPMQYKAMQAAGQILATALLPTMTPGGLAVTP 393
Query: 161 MPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH 220
MPV V+ Q TR ARR+YVG +P E+++ F + M + G + PG+ ++ V IN
Sbjct: 394 MPVPVVGSQMTRQARRLYVGTIPFGITEESMLDFLNTQM-HLRGLTQAPGNPILAVQINL 452
Query: 221 EKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
+K FAF+E R+V+E + A+A DGIIF+G ++++RRP DY P + P P
Sbjct: 453 DKNFAFLEFRSVDETTQALAFDGIIFQGQSLKIRRPHDYQPLPGMSGSPSVYVP------ 506
Query: 281 VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGF 340
G+ S + + ++F+GGLP Y + Q+KELL S G L F+LVKD TG SKGY F
Sbjct: 507 -GVVSTIV--PDSAHKLFIGGLPNYLNDDQVKELLTSVGILRAFNLVKDSITGLSKGYAF 563
Query: 341 CVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMAL 400
C Y D VTD A A LNG+ +GDK L V+RA+ +K SI+ Q + L
Sbjct: 564 CEYMDINVTDQAIAWLNGMHLGDKKLLVQRASVG---AKNVALSIINQT-------PVTL 613
Query: 401 QTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
Q G+ + M G VLCL M+
Sbjct: 614 QVPGLTSSQVQM---GGHPTTVLCLMNMV 639
>gi|309266895|ref|XP_003086891.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like, partial [Mus
musculus]
Length = 493
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 124/329 (37%), Positives = 175/329 (53%), Gaps = 29/329 (8%)
Query: 103 RSPS--KSKRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPL 160
RSP K K R +D+ PP + P Q + +A +A +LP A
Sbjct: 101 RSPCHEKKKVRKYWDVPPPGFEHV----TPMQYKAMQAAGQILATALLPTMTPGGLAVTP 156
Query: 161 MPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH 220
MPV V+ Q TR ARR+YVG +P E+++ F + M + G + PG+ ++ V IN
Sbjct: 157 MPVPVVGSQMTRQARRLYVGTIPFGITEESMLDFLNTQM-HLRGLTQAPGNPILAVQINL 215
Query: 221 EKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
+K FAF+E R+V+E + A+A DGIIF+G ++++RRP DY P + G PS +
Sbjct: 216 DKNFAFLEFRSVDETTQALAFDGIIFQGQSLKIRRPHDYQPLPGMS---GSPS----VYV 268
Query: 281 VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGF 340
G+ S + + ++F+GGLP Y + Q+KELL S G L F+LVKD TG SKGY F
Sbjct: 269 PGVVSTIV--PDSAHKLFIGGLPNYLNDDQVKELLTSVGILRAFNLVKDSITGLSKGYAF 326
Query: 341 CVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMAL 400
C Y D VTD A A LNG+ +GDK L V+RA+ +K SI+ Q + L
Sbjct: 327 CEYMDINVTDQAIAWLNGMHLGDKKLLVQRASVG---AKNVALSIINQT-------PVTL 376
Query: 401 QTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
Q G+ + M G VLCL M+
Sbjct: 377 QVPGLTSSQVQM---GGHPTTVLCLMNMV 402
>gi|405976087|gb|EKC40607.1| Splicing factor U2AF 50 kDa subunit [Crassostrea gigas]
Length = 428
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 148/259 (57%), Gaps = 31/259 (11%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
+R ARR+YVG +P E+A+ FF+ M G A G V+ V IN +K FAF+E R
Sbjct: 111 SRQARRLYVGNIPFGVTEEAMMDFFNHQMKMTGLAQA-EGSPVIAVQINLDKNFAFLEFR 169
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
+V+E + AMA DGI F+G ++++RRP DY P A +P++N+ G+ S +
Sbjct: 170 SVDETTQAMAFDGINFQGQSLKIRRPRDYQPLPGMA-----ETPSVNVP--GVVSTVV-- 220
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
+ P ++F+GGLP Y E Q+KELL SFG L F+LVKD TG SKGY FC Y DP VTD
Sbjct: 221 QDSPHKIFIGGLPNYLNEDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDPNVTD 280
Query: 351 IACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGG 410
CA LNG+++GDK L V+RA+ + S+ + +Q LQ G+N G
Sbjct: 281 QGCAGLNGMQLGDKKLIVQRASLGAKNSQ-------------VPVQ---LQIPGLNLNQG 324
Query: 411 GMSLFGETLAKVLCLTEMM 429
+VLCL M+
Sbjct: 325 -----AGPPTEVLCLMNMI 338
>gi|50882018|gb|AAT85577.1| U2 small nuclear ribonucleoprotein auxiliary factor large subunit
[Alvinella pompejana]
Length = 479
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 120/329 (36%), Positives = 174/329 (52%), Gaps = 46/329 (13%)
Query: 113 GFD-MAPPAAAMLPGAAVPGQL--PGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMT-- 167
GF+ M P L G PG L PG+P P +A N + A P P+ + T
Sbjct: 95 GFEHMTPMQYKALHGLGPPGGLAAPGMPVVAPVIAAN-------NVVASPTAPMALNTTI 147
Query: 168 ----QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK 223
+R ARR+YVG +P E+ + +F+ M + G + G+ V+ ++N +K
Sbjct: 148 PFAGSAISRQARRLYVGNIPFGVTEEMMMDYFNTQMK-MAGLAQAEGNPVIACHVNLDKN 206
Query: 224 FAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGL 283
FAF+E R+V+E + AMA DGI F+G ++++RRP DY P A P ++A G+
Sbjct: 207 FAFLEFRSVDETTQAMAFDGINFQGQSLKIRRPKDYQPLPGMAEVP-------SVAVPGV 259
Query: 284 ASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343
S + + ++F+GGLP Y E Q+KELL SFG L F+LVKD TG SKGY FC Y
Sbjct: 260 VSTVV--QDSAHKIFIGGLPNYLNEDQVKELLTSFGLLKAFNLVKDSATGLSKGYAFCEY 317
Query: 344 QDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTS 403
DP++TD ACA LNG+++GD+ L V+RA+ + AQ + + LQ
Sbjct: 318 LDPSITDQACAGLNGMQLGDEKLIVQRASVGA-----------KNAQGGPNVLPVQLQIP 366
Query: 404 GMN---TLGGGMSLFGETLAKVLCLTEMM 429
G+N G G + +VLCL M+
Sbjct: 367 GLNMAQVQGPGPT------TEVLCLMNMV 389
>gi|148697816|gb|EDL29763.1| mCG68163 [Mus musculus]
Length = 472
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 124/329 (37%), Positives = 175/329 (53%), Gaps = 29/329 (8%)
Query: 103 RSPS--KSKRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPL 160
RSP K K R +D+ PP + P Q + +A +A +LP A
Sbjct: 80 RSPCHEKKKVRKYWDVPPPGFEHV----TPMQYKAMQAAGQILATALLPTMTPGGLAVTP 135
Query: 161 MPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH 220
MPV V+ Q TR ARR+YVG +P E+++ F + M + G + PG+ ++ V IN
Sbjct: 136 MPVPVVGSQMTRQARRLYVGTIPFGITEESMLDFLNTQM-HLRGLTQAPGNPILAVQINL 194
Query: 221 EKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
+K FAF+E R+V+E + A+A DGIIF+G ++++RRP DY P + G PS +
Sbjct: 195 DKNFAFLEFRSVDETTQALAFDGIIFQGQSLKIRRPHDYQPLPGMS---GSPS----VYV 247
Query: 281 VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGF 340
G+ S + + ++F+GGLP Y + Q+KELL S G L F+LVKD TG SKGY F
Sbjct: 248 PGVVSTIV--PDSAHKLFIGGLPNYLNDDQVKELLTSVGILRAFNLVKDSITGLSKGYAF 305
Query: 341 CVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMAL 400
C Y D VTD A A LNG+ +GDK L V+RA+ +K SI+ Q + L
Sbjct: 306 CEYMDINVTDQAIAWLNGMHLGDKKLLVQRASVG---AKNVALSIINQT-------PVTL 355
Query: 401 QTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
Q G+ + M G VLCL M+
Sbjct: 356 QVPGLTSSQVQM---GGHPTTVLCLMNMV 381
>gi|389610875|dbj|BAM19048.1| U2 small nuclear riboprotein auxiliary factor 50 [Papilio polytes]
Length = 422
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 107/271 (39%), Positives = 154/271 (56%), Gaps = 21/271 (7%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P V V+ TR ARR+YVG +P E+ FF+Q M + G + G+ V+ I
Sbjct: 83 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQM-HLSGLAQAAGNPVLACQI 141
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
N +K FAF+E R+++E + AMA DGI F+G ++++RRP DY P PG +P +N+
Sbjct: 142 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPM------PGTENPAINV 195
Query: 279 AAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
A G+ S + + P ++F+GGLP Y E Q+KELL SFG L F+LVKD TG SKGY
Sbjct: 196 PA-GVISTVV--PDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGY 252
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKM 398
F Y D ++TD A A LNG+++GDK L V+RA+ + S ++ Q +
Sbjct: 253 AFAEYVDISMTDQAIAGLNGMQLGDKKLIVQRASIGAKNS-----TLGVYIQSMTGAAPV 307
Query: 399 ALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
LQ +G+ G G + +VLCL M+
Sbjct: 308 TLQVAGLTLAGAGPA------TEVLCLLNMV 332
>gi|343426615|emb|CBQ70144.1| related to pre-mRNA splicing factor U2AF large chain [Sporisorium
reilianum SRZ2]
Length = 710
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/230 (41%), Positives = 140/230 (60%), Gaps = 15/230 (6%)
Query: 150 FGATQLGAFPLM----PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGN 205
FG G++P P ++ Q A R ARR+YVG + NE I FF++ M +
Sbjct: 310 FGGADNGSYPSSQGPSPAELAAQNANRQARRLYVGNITHQTNEHNIVAFFNEQMLKLKLG 369
Query: 206 SAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAA 265
+ PG+ V+ +N +K +AFVE R +EA+NAM+ DGI+F+ ++++RRP DY
Sbjct: 370 TE-PGEPAVSAQVNVDKGYAFVEFRHPDEATNAMSFDGIVFQAQSLKIRRPKDYT----- 423
Query: 266 ALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFD 325
GP P+ N+ G+ S + + P ++FVGGLP Y T+ Q+ ELL++FG L F+
Sbjct: 424 --GPDVRPPS-NIHVPGVISTNV--PDSPFKIFVGGLPTYLTDDQVIELLQAFGELRAFN 478
Query: 326 LVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
LVKD TG SKG+ FC Y D A+TD+AC LNG+++GD+ L V+RA+ S
Sbjct: 479 LVKDTGTGASKGFAFCEYVDTALTDLACQGLNGMELGDRNLVVQRASVGS 528
>gi|357623461|gb|EHJ74600.1| U2 small nuclear ribonucleoprotein auxiliary factor 2 [Danaus
plexippus]
Length = 350
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/271 (39%), Positives = 154/271 (56%), Gaps = 26/271 (9%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P V V+ TR ARR+YVG +P E+ FF+Q M + G + G+ V+ I
Sbjct: 16 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQM-HLSGLAQAAGNPVLACQI 74
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
N +K FAF+E R+++E + AMA DGI F+G ++++RRP DY P PG +P +N+
Sbjct: 75 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPM------PGTENPAINV 128
Query: 279 AAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
A G+ S + + P ++F+GGLP Y E Q+KELL SFG L F+LVKD TG SKGY
Sbjct: 129 PA-GVISTVV--PDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGY 185
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKM 398
F Y D ++TD A A LNG+++GDK L V+RA+ + + S LA +
Sbjct: 186 AFAEYVDISMTDQAIAGLNGMQLGDKKLIVQRASIGA------KNSTLAMT----GAAPV 235
Query: 399 ALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
LQ +G+ G G + +VLCL M+
Sbjct: 236 TLQVAGLTLAGAGPA------TEVLCLLNMV 260
>gi|432908695|ref|XP_004077988.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 1
[Oryzias latipes]
Length = 458
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 127/362 (35%), Positives = 186/362 (51%), Gaps = 51/362 (14%)
Query: 68 RHRDYNRDKERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPAAAMLPGA 127
+ R + R++ HR + + + P GF+ P A
Sbjct: 57 KERRHRRNRS-PHREKKKKIKK------YWDVPP----------PGFEHITPMQYKAMQA 99
Query: 128 AVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLAN 187
A GQ+P + +P M + L T PV V+ Q TR ARR+YVG +P
Sbjct: 100 A--GQIPAT-ALLPTMTPDGLAVTPT--------PVPVVGSQMTRQARRLYVGNIPFGIT 148
Query: 188 EQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFE 247
E+++ FF+ M +GG + PG+ V+ V IN +K FAF+E R+V+E + AMA DGIIF+
Sbjct: 149 EESMMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQ 207
Query: 248 GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFT 307
G ++++RRP DY P PG S N ++ G+ S + + ++F+GGLP Y
Sbjct: 208 GQSLKIRRPHDYQPL------PGM-SENPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLN 258
Query: 308 ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367
+ Q+KELL SFG L F+LVKD TG SKGY FC Y D + D A A LNG+++GDK L
Sbjct: 259 DDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLL 318
Query: 368 VRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTE 427
V+RA+ S + + L Q + LQ G+N+ ++ G +VLCL
Sbjct: 319 VQRASVGS------KNATLTSINQ----TPVTLQVPGLNS---SVTQMGGLPTEVLCLMN 365
Query: 428 MM 429
M+
Sbjct: 366 MV 367
>gi|289741197|gb|ADD19346.1| splicing factor U2AF large subunit [Glossina morsitans morsitans]
Length = 423
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 158/301 (52%), Gaps = 29/301 (9%)
Query: 134 PGVPSAVPEMAQNMLPFGATQLGAFPLMP---VQVMTQQATRHARRVYVGGLPPLANEQA 190
PG P + M G A P +P V V+ TR ARR+YVG +P E
Sbjct: 57 PGFEHITPLQYKAMQAAGQIPANALPEIPQAAVPVVGSTITRQARRLYVGNIPFGVTEDE 116
Query: 191 IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250
+ FF+Q M G A G+ V+ IN +K FAF+E R+ +E + AMA DGI F+G +
Sbjct: 117 MMEFFNQQMHLTGLAQAA-GNPVLACQINLDKNFAFLEFRSTDETTQAMAFDGISFKGQS 175
Query: 251 VRVRRPTDYNPTLAAALGPG--QPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTE 308
+++RRP DY P PG + +P A G+ S + + P ++F+GGLP Y E
Sbjct: 176 LKIRRPHDYQPM------PGVVESTPVAQPVANGVISAVV--PDSPHKIFIGGLPNYLNE 227
Query: 309 TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
Q+KELL SFG L F+LVKD TG SKGY FC Y D ++TD A A LNG+++GDK L V
Sbjct: 228 DQVKELLLSFGQLRAFNLVKDAATGLSKGYAFCEYIDHSITDQAIAGLNGMQLGDKKLIV 287
Query: 369 RRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEM 428
+RA+ + ++ H + +Q G++ +G +VLCL M
Sbjct: 288 QRASVGAKNAQN----------NHTTAAPVMIQVPGLSMVG-----ISGPPTEVLCLLNM 332
Query: 429 M 429
+
Sbjct: 333 V 333
>gi|260800970|ref|XP_002595369.1| hypothetical protein BRAFLDRAFT_113856 [Branchiostoma floridae]
gi|229280615|gb|EEN51381.1| hypothetical protein BRAFLDRAFT_113856 [Branchiostoma floridae]
Length = 524
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 104/261 (39%), Positives = 143/261 (54%), Gaps = 23/261 (8%)
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVE 228
Q TR ARR+YVG +P E+A+ FF+ M A PG+ V+ +N +K FAF+E
Sbjct: 196 QMTRQARRLYVGNIPFGVTEEAMIDFFNTQMHRASLAQA-PGNPVLACQVNLDKNFAFLE 254
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
R+V+E + AMA DGIIF+G ++++RRP DY P A P P G+ S +
Sbjct: 255 FRSVDETTLAMAFDGIIFQGQSLKLRRPHDYQPVPGMAENPDIHVPGGFPVIPGVVSTVV 314
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
+ P ++F+GGLP Y + Q+KELL SFG L F+LVKD T SKGY FC Y DP V
Sbjct: 315 --QDSPHKIFIGGLPNYLNDDQVKELLLSFGQLKAFNLVKDSSTALSKGYAFCEYVDPNV 372
Query: 349 TDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTL 408
TD A A LNG+++GDK L V+RA+ + ++ Q + LQ G+
Sbjct: 373 TDQAIAGLNGMQLGDKKLIVQRASVGAKNAQN---------------QPVQLQIPGLTLT 417
Query: 409 GGGMSLFGETLAKVLCLTEMM 429
G +VLCL M+
Sbjct: 418 GN-----AGPPTEVLCLMNMV 433
>gi|443731660|gb|ELU16702.1| hypothetical protein CAPTEDRAFT_155651 [Capitella teleta]
Length = 480
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 149/259 (57%), Gaps = 25/259 (9%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
+R ARR+YVG +P E+ + FF+ M + S G+ V+ +N +K FAF+E R
Sbjct: 157 SRQARRLYVGNIPFGVTEEMMMDFFNTQMK-MAALSQAEGNPVIACQVNLDKNFAFLEYR 215
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
+V+E ++AMALDGI F+G ++++RRP DY P A P N+A G+ S +
Sbjct: 216 SVDETTHAMALDGINFQGQSLKIRRPKDYQPLPGIAETP-------NVAVPGVVSTVV-- 266
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
+ ++F+GGLP Y E Q+KELL SFG L F LVKD TG SKGY FC Y D ++TD
Sbjct: 267 QDSAHKIFIGGLPNYLNEDQVKELLTSFGPLKAFSLVKDSATGLSKGYAFCEYLDISITD 326
Query: 351 IACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGG 410
ACA LNG+++GDK L V+RA+ + + +I++ A + I +A+
Sbjct: 327 QACAGLNGMQLGDKKLIVQRASVGAKNA-----AIISSAPMQMQIPGLAVNP-------- 373
Query: 411 GMSLFGETLAKVLCLTEMM 429
M+ G +VLCL M+
Sbjct: 374 -MAAAGPA-TEVLCLMNMV 390
>gi|388856534|emb|CCF49840.1| related to pre-mRNA splicing factor U2AF large chain [Ustilago
hordei]
Length = 718
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 133/214 (62%), Gaps = 11/214 (5%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
P +V Q R ARR+YVG + ANE + FF++ M + + PG+ V+ +N +
Sbjct: 330 PEEVAQQNNNRQARRLYVGNITHSANEPNMVAFFNEQMLKLKLGTE-PGEPAVSAQVNVD 388
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K +AFVE R EEA+NAM+ DGI+F+G ++++RRP DY GP P N+
Sbjct: 389 KGYAFVEFRHPEEATNAMSFDGIVFQGQSLKIRRPKDYT-------GP-DVRPASNIHVP 440
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
G+ S + + P ++FVGGLP Y T+ Q+ ELL++FG L F+LVKD G SKG+ FC
Sbjct: 441 GVISTNV--PDSPHKIFVGGLPTYLTDDQVIELLQAFGELRAFNLVKDTANGASKGFAFC 498
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
Y D A+TD+AC LNG+++GD+ L V+RA+ S
Sbjct: 499 EYVDTALTDLACQGLNGMELGDRNLVVQRASVGS 532
>gi|114052735|ref|NP_001040494.1| U2 small nuclear ribonucleoprotein auxiliary factor 2 [Bombyx mori]
gi|95103122|gb|ABF51502.1| U2 small nuclear ribonucleoprotein auxiliary factor 2 isoform 1
[Bombyx mori]
Length = 417
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/271 (39%), Positives = 153/271 (56%), Gaps = 26/271 (9%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P V V+ TR ARR+YVG +P E+ FF+Q M + G + G+ V+ I
Sbjct: 83 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQM-HLSGLAQAAGNPVLACQI 141
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
N +K FAF+E R+++E + AMA DGI F+G ++++RRP DY P PG +P +N+
Sbjct: 142 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPM------PGTENPAINV 195
Query: 279 AAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
A G+ S + + P ++F+GGLP Y E Q+KELL SFG L F+LVKD TG SKGY
Sbjct: 196 PA-GVISTVV--PDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGY 252
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKM 398
F Y D ++TD A A LNG+++GDK L V+RA+ + + S LA +
Sbjct: 253 AFAEYVDISMTDQAIAGLNGMQLGDKKLIVQRASIGA------KNSTLALT----GAAPV 302
Query: 399 ALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+Q +G+ G G +VLCL M+
Sbjct: 303 QIQVAGLTLAGAGPP------TEVLCLLNMV 327
>gi|195167317|ref|XP_002024480.1| GL15893 [Drosophila persimilis]
gi|198469588|ref|XP_001355063.2| GA22177 [Drosophila pseudoobscura pseudoobscura]
gi|194107878|gb|EDW29921.1| GL15893 [Drosophila persimilis]
gi|198146942|gb|EAL32119.2| GA22177 [Drosophila pseudoobscura pseudoobscura]
Length = 418
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 162/302 (53%), Gaps = 44/302 (14%)
Query: 131 GQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQA 190
GQ+P S VP+ Q +P V+ TR ARR+YVG +P E+
Sbjct: 68 GQIPA--SVVPDTPQTAVP---------------VVGSTITRQARRLYVGNIPFGVTEEE 110
Query: 191 IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250
+ FF+Q M +G A G V+ IN +K FAF+E R+++E + AMA DGI +G +
Sbjct: 111 MMEFFNQQMHLVGLAQAA-GSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQS 169
Query: 251 VRVRRPTDYNPTLAAALGPG-QPSPNLNLAAVGLASGAIGGA--EGPDRVFVGGLPYYFT 307
+++RRP DY P PG +P + A V +SG I + P ++F+GGLP Y
Sbjct: 170 LKIRRPHDYQPM------PGITDTPAIKPAVV--SSGVISTVVPDSPHKIFIGGLPNYLN 221
Query: 308 ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367
+ Q+KELL SFG L F+LVKD TG SKGY FC Y D ++TD + A LNG+++GDK L
Sbjct: 222 DDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLI 281
Query: 368 VRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTE 427
V+RA+ + ++ S Q + LQ G++T+ + +VLCL
Sbjct: 282 VQRASVGAKNAQNASNS----------SQSVMLQVPGLSTV-----VSSGPPTEVLCLLN 326
Query: 428 MM 429
M+
Sbjct: 327 MV 328
>gi|328721670|ref|XP_001951521.2| PREDICTED: splicing factor U2AF 50 kDa subunit-like isoform 1
[Acyrthosiphon pisum]
Length = 416
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/283 (37%), Positives = 150/283 (53%), Gaps = 32/283 (11%)
Query: 95 RSKSLSPSRSPSKSKRRSGFDMAPP-----AAAMLPGAAVPGQLPGVPSAVPEMAQNMLP 149
RS+S SP + K +D+ PP A GQ+P + +P+ Q +P
Sbjct: 32 RSRSKSPKNKSRRRKPSLYWDVPPPGFEHIAPLQYKAMQAAGQIPA--NTMPDTPQTAVP 89
Query: 150 FGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP 209
V+ TR ARR+YVG +P E + FF+Q M + G +
Sbjct: 90 ---------------VVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM-HLSGLAQAA 133
Query: 210 GDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGP 269
G+ V+ IN +K FAF+E R+++E + AMA DGI F+G ++++RRP DY PT +
Sbjct: 134 GNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPT--PGMTE 191
Query: 270 GQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD 329
P N N SG P ++F+GGLP Y + Q+KELL SFG L F+LVKD
Sbjct: 192 SNPVTNYN-------SGMTLDMNSPHKIFIGGLPAYLNDEQVKELLTSFGQLKAFNLVKD 244
Query: 330 RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
TG SKGY FC Y D +TD A A LNG+++G+K L V+RA+
Sbjct: 245 AATGLSKGYAFCEYADVVMTDQAIAGLNGMQLGEKKLIVQRAS 287
>gi|410903109|ref|XP_003965036.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 4
[Takifugu rubripes]
Length = 455
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 109/277 (39%), Positives = 153/277 (55%), Gaps = 36/277 (12%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEK 222
V V+ Q TR ARR+YVG +P E+++A FF+ M + G S P + V+ V IN +K
Sbjct: 115 VPVVGSQMTRQARRLYVGNIPFGVTEESMAEFFNAQMR-LAGLSQAPSNPVLAVQINQDK 173
Query: 223 KFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVG 282
FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P + P P G
Sbjct: 174 NFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYRPLPGISEQPVFHVP-------G 226
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQI---------KELLESFGTLHGFDLVKDRDTG 333
+ S + + P ++F+GGLP Y + Q+ KELL SFG L F+LVKD T
Sbjct: 227 VVSTVV--PDSPHKLFIGGLPNYLNDDQVLIRRLGWRVKELLTSFGPLKAFNLVKDSATS 284
Query: 334 NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHI 393
SKGY FC Y D + TD A A LNG+++GDK L V+RA+ +K S + +A +
Sbjct: 285 LSKGYAFCEYVDVSATDQAVAGLNGMQLGDKKLIVQRASVG---AKNANPSAIIEAPVTL 341
Query: 394 AIQKMA-LQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ + LQ SGM T +VLCL M+
Sbjct: 342 QVPGLQRLQNSGMPT-------------EVLCLLNMV 365
>gi|194770152|ref|XP_001967161.1| GF19596 [Drosophila ananassae]
gi|190619281|gb|EDV34805.1| GF19596 [Drosophila ananassae]
Length = 416
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 162/302 (53%), Gaps = 44/302 (14%)
Query: 131 GQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQA 190
GQ+P S VP+ Q +P V+ TR ARR+YVG +P E+
Sbjct: 66 GQIPA--SVVPDTPQTAVP---------------VVGSTITRQARRLYVGNIPFGVTEEE 108
Query: 191 IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250
+ FF+Q M +G A G V+ IN +K FAF+E R+++E + AMA DGI +G +
Sbjct: 109 MMEFFNQQMHLVGLAQAA-GSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQS 167
Query: 251 VRVRRPTDYNPTLAAALGPG-QPSPNLNLAAVGLASGAIGGA--EGPDRVFVGGLPYYFT 307
+++RRP DY P PG +P + A V +SG I + P ++F+GGLP Y
Sbjct: 168 LKIRRPHDYQPM------PGITDTPAIKPAVV--SSGVISTVVPDSPHKIFIGGLPNYLN 219
Query: 308 ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367
+ Q+KELL SFG L F+LVKD TG SKGY FC Y D ++TD + A LNG+++GDK L
Sbjct: 220 DDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLI 279
Query: 368 VRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTE 427
V+RA+ + ++ + Q + LQ G++T+ + +VLCL
Sbjct: 280 VQRASVGAKNAQNASNT----------TQSVMLQVPGLSTV-----VTSGPPTEVLCLLN 324
Query: 428 MM 429
M+
Sbjct: 325 MV 326
>gi|328721668|ref|XP_003247369.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like isoform 2
[Acyrthosiphon pisum]
Length = 451
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 154/290 (53%), Gaps = 32/290 (11%)
Query: 95 RSKSLSPSRSPSKSKRRSGFDMAPP-----AAAMLPGAAVPGQLPGVPSAVPEMAQNMLP 149
RS+S SP + K +D+ PP A GQ+P + +P+ Q +P
Sbjct: 53 RSRSKSPKNKSRRRKPSLYWDVPPPGFEHIAPLQYKAMQAAGQIPA--NTMPDTPQTAVP 110
Query: 150 FGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP 209
V+ TR ARR+YVG +P E + FF+Q M + G +
Sbjct: 111 ---------------VVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM-HLSGLAQAA 154
Query: 210 GDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGP 269
G+ V+ IN +K FAF+E R+++E + AMA DGI F+G ++++RRP DY PT +
Sbjct: 155 GNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPT--PGMTE 212
Query: 270 GQPSPNLN----LAAVGLASGAIGGAEGPD---RVFVGGLPYYFTETQIKELLESFGTLH 322
P N N L + S + G PD ++F+GGLP Y + Q+KELL SFG L
Sbjct: 213 SNPVTNYNSGMTLDMMKYDSSSFGLGTVPDSPHKIFIGGLPAYLNDEQVKELLTSFGQLK 272
Query: 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
F+LVKD TG SKGY FC Y D +TD A A LNG+++G+K L V+RA+
Sbjct: 273 AFNLVKDAATGLSKGYAFCEYADVVMTDQAIAGLNGMQLGEKKLIVQRAS 322
>gi|195448282|ref|XP_002071589.1| GK10063 [Drosophila willistoni]
gi|194167674|gb|EDW82575.1| GK10063 [Drosophila willistoni]
Length = 416
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 162/302 (53%), Gaps = 44/302 (14%)
Query: 131 GQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQA 190
GQ+P S VP+ Q +P V+ TR ARR+YVG +P E+
Sbjct: 66 GQIPA--SVVPDTPQTAVP---------------VVGSTITRQARRLYVGNIPFGVTEEE 108
Query: 191 IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250
+ FF+Q M +G A G V+ IN +K FAF+E R+++E + AMA DGI +G +
Sbjct: 109 MMEFFNQQMHLVGLAQAA-GSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQS 167
Query: 251 VRVRRPTDYNPTLAAALGPG-QPSPNLNLAAVGLASGAIGGA--EGPDRVFVGGLPYYFT 307
+++RRP DY P PG +P + A V +SG I + P ++F+GGLP Y
Sbjct: 168 LKIRRPHDYQPM------PGITDTPAIKPAVV--SSGVISTVVPDSPHKIFIGGLPNYLN 219
Query: 308 ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367
+ Q+KELL SFG L F+LVKD TG SKGY FC Y D ++TD + A LNG+++GDK L
Sbjct: 220 DDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLI 279
Query: 368 VRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTE 427
V+RA+ + ++ + Q + LQ G++T+ + +VLCL
Sbjct: 280 VQRASVGAKNAQNAANT----------TQSVMLQVPGLSTV-----VTSGPPTEVLCLLN 324
Query: 428 MM 429
M+
Sbjct: 325 MV 326
>gi|242019185|ref|XP_002430045.1| Splicing factor U2AF 50 kDa subunit, putative [Pediculus humanus
corporis]
gi|212515110|gb|EEB17307.1| Splicing factor U2AF 50 kDa subunit, putative [Pediculus humanus
corporis]
Length = 445
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 107/272 (39%), Positives = 154/272 (56%), Gaps = 28/272 (10%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P V V+ TR ARR+YVG +P E+ + FF+Q M + G + G+ V+ I
Sbjct: 111 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM-HLSGLAQAAGNPVLACQI 169
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQ-PSPNLN 277
N +K FAF+E R+++E + AMA DGI F+G ++++RRP DY P PG +P++N
Sbjct: 170 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPM------PGMSENPSVN 223
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
+ A G+ S + + P ++F+GGLP Y E Q+KELL SFG L F+LV D TG SKG
Sbjct: 224 VPA-GVISTVV--PDSPHKIFIGGLPNYLNEDQLKELLMSFGQLRAFNLVMDSTTGLSKG 280
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQK 397
Y FC++ D VTD A A LNG+++GDK L V+RA+ + + Q Q + IQ
Sbjct: 281 YAFCLFVDINVTDQAIAGLNGMQLGDKKLIVQRASVGAKNTALGQ-------QAPVQIQV 333
Query: 398 MALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
L + GM+ +VLCL M+
Sbjct: 334 PGLTSVGMSG----------PPTEVLCLLNMV 355
>gi|237838479|ref|XP_002368537.1| RNA binding motif-containing protein [Toxoplasma gondii ME49]
gi|211966201|gb|EEB01397.1| RNA binding motif-containing protein [Toxoplasma gondii ME49]
gi|221505828|gb|EEE31473.1| RNA binding motif-containing protein, putative [Toxoplasma gondii
VEG]
Length = 816
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 134/223 (60%), Gaps = 23/223 (10%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
+RHAR+VYVG LP + + +F++++T + PGD +V+VY+N ++FAF+E R
Sbjct: 275 SRHARKVYVGNLPVPVTQAEVQQYFNELLTTLLPKKV-PGDTIVHVYVNPSRRFAFLEHR 333
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLA--------AALG---------PGQPS 273
++EEA+ + LDG+ + A+ +RRP DYNPTLA A LG P Q +
Sbjct: 334 SIEEANFTLGLDGVSWRNCALSLRRPQDYNPTLAEQQYREERARLGSMTGFAVPPPSQAA 393
Query: 274 PNLNLAAVGLASGAIGGA-----EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328
+ A L +GA+G + P ++F+GGLP+ TE K+LLE+FG L +VK
Sbjct: 394 TPASPAESSLIAGALGIVSTTVPDSPHKIFIGGLPHSITEQGCKQLLEAFGQLRALHVVK 453
Query: 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
D+ G+ KG+ FC Y DP VTD+A A LN +++ D+ L VRRA
Sbjct: 454 DQQRGDCKGFAFCEYLDPNVTDVAVAGLNNMRIADRVLQVRRA 496
>gi|95103124|gb|ABF51503.1| U2 small nuclear ribonucleoprotein auxiliary factor 2 isoform 2
[Bombyx mori]
Length = 306
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 135/220 (61%), Gaps = 10/220 (4%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P V V+ TR ARR+YVG +P E+ FF+Q M + G + G+ V+ I
Sbjct: 83 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMH-LSGLAQAAGNPVLACQI 141
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
N +K FAF+E R+++E + AMA DGI F+G ++++RRP DY P PG +P +N+
Sbjct: 142 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPM------PGTENPAINV 195
Query: 279 AAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
A G+ S + + P ++F+GGLP Y E Q+KELL SFG L F+LVKD TG SKGY
Sbjct: 196 PA-GVISTVV--PDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSSTGLSKGY 252
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
F Y D ++TD A A LNG+++GDK L V+RA+ + S
Sbjct: 253 AFAEYVDISMTDQAIAGLNGMQLGDKKLIVQRASIGAKNS 292
>gi|221484193|gb|EEE22489.1| RNA binding motif-containing protein, putative [Toxoplasma gondii
GT1]
Length = 820
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 134/223 (60%), Gaps = 23/223 (10%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
+RHAR+VYVG LP + + +F++++T + PGD +V+VY+N ++FAF+E R
Sbjct: 279 SRHARKVYVGNLPVPVTQAEVQQYFNELLTTLLPKKV-PGDTIVHVYVNPSRRFAFLEHR 337
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLA--------AALG---------PGQPS 273
++EEA+ + LDG+ + A+ +RRP DYNPTLA A LG P Q +
Sbjct: 338 SIEEANFTLGLDGVSWRNCALSLRRPQDYNPTLAEQQYREERARLGSMTGFAVPPPSQAA 397
Query: 274 PNLNLAAVGLASGAIGGA-----EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328
+ A L +GA+G + P ++F+GGLP+ TE K+LLE+FG L +VK
Sbjct: 398 TPASPAESSLIAGALGIVSTTVPDSPHKIFIGGLPHSITEQGCKQLLEAFGQLRALHVVK 457
Query: 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
D+ G+ KG+ FC Y DP VTD+A A LN +++ D+ L VRRA
Sbjct: 458 DQQRGDCKGFAFCEYLDPNVTDVAVAGLNNMRIADRVLQVRRA 500
>gi|386764548|ref|NP_001245708.1| U2 small nuclear riboprotein auxiliary factor 50, isoform B
[Drosophila melanogaster]
gi|383293438|gb|AFH07421.1| U2 small nuclear riboprotein auxiliary factor 50, isoform B
[Drosophila melanogaster]
Length = 427
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 161/303 (53%), Gaps = 46/303 (15%)
Query: 131 GQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQA 190
GQ+P S VP+ Q +P V+ TR ARR+YVG +P E+
Sbjct: 77 GQIPA--SVVPDTPQTAVP---------------VVGSTITRQARRLYVGNIPFGVTEEE 119
Query: 191 IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250
+ FF+Q M +G A G V+ IN +K FAF+E R+++E + AMA DGI +G +
Sbjct: 120 MMEFFNQQMHLVGLAQAA-GSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQS 178
Query: 251 VRVRRPTDYNPTLAAALGPG-QPSPNLNLAAVGLASGAIGGA--EGPDRVFVGGLPYYFT 307
+++RRP DY P PG +P + A V +SG I + P ++F+GGLP Y
Sbjct: 179 LKIRRPHDYQPM------PGITDTPAIKPAVV--SSGVISTVVPDSPHKIFIGGLPNYLN 230
Query: 308 ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367
+ Q+KELL SFG L F+LVKD TG SKGY FC Y D ++TD + A LNG+++GDK L
Sbjct: 231 DDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLI 290
Query: 368 VRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGM-NTLGGGMSLFGETLAKVLCLT 426
V+RA+ + ++ + Q + LQ G+ N + G +VLCL
Sbjct: 291 VQRASVGAKNAQNAANT----------TQSVMLQVPGLSNVVTSGPP------TEVLCLL 334
Query: 427 EMM 429
M+
Sbjct: 335 NMV 337
>gi|193629757|ref|XP_001950852.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like [Acyrthosiphon
pisum]
Length = 446
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 120/347 (34%), Positives = 172/347 (49%), Gaps = 50/347 (14%)
Query: 95 RSKSLSPSRSPSKSKRRSGFDMAPP-----AAAMLPGAAVPGQLPGVPSAVPEMAQNMLP 149
RS+S SP + K +D+ PP A GQ+P + +P+ Q +P
Sbjct: 48 RSRSKSPKNKSRRRKPSLYWDVPPPGFEHIAPLQYKAMQAAGQIPA--NTMPDTPQTAVP 105
Query: 150 FGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP 209
V+ TR ARR+YVG +P E + FF+Q M + G +
Sbjct: 106 ---------------VVGSTITRQARRLYVGNIPFGVTEDEMMEFFNQQM-HLSGLAQAA 149
Query: 210 GDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGP 269
G+ V+ IN +K FAF+E R+++E + AMA DGI F+G ++++RRP DY PT +
Sbjct: 150 GNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPT--PGMTE 207
Query: 270 GQPSPNLN----LAAVGLASGAIGGAEGPD---RVFVGGLPYYFTETQIKELLESFGTLH 322
P N N L + S + G PD ++F+GGLP Y + Q+KELL SFG L
Sbjct: 208 SNPVTNYNSGMTLDMMKYDSSSFGLGTVPDSPHKIFIGGLPAYLNDEQVKELLTSFGQLK 267
Query: 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQ 382
F+LVKD TG SKGY FC Y D +TD A A LNG+++G+K L V+RA+ +
Sbjct: 268 AFNLVKDAATGLSKGYAFCEYADVVMTDQAIAGLNGMQLGEKKLIVQRASIGAKNPG--- 324
Query: 383 ESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
L QA + +Q G+ +G +VLCL M+
Sbjct: 325 ---LGQA-------PVTIQVPGLTVVGT-----AGPPTEVLCLLNMV 356
>gi|345480698|ref|XP_001604333.2| PREDICTED: splicing factor U2AF 50 kDa subunit-like [Nasonia
vitripennis]
Length = 455
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 108/273 (39%), Positives = 153/273 (56%), Gaps = 37/273 (13%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P V V+ TR ARR+YVG +P E+ + FF+Q M + G + G+ V+ I
Sbjct: 128 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM-HLSGLAQAAGNPVLACQI 186
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP-SPNLN 277
N +K FAF+E R+++E + AMA DGI F+G ++++RRP DY P PG +P++N
Sbjct: 187 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPM------PGMTDNPSMN 240
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
+ + P ++F+GGLP Y E Q+KELL SFG L F+LVKD TG SKG
Sbjct: 241 VP------------DSPHKIFIGGLPNYLNEEQVKELLMSFGQLRAFNLVKDSATGLSKG 288
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQK 397
Y FC Y D ++TD A A LNG+++GDK L V+RA+ +K I AQA I +
Sbjct: 289 YAFCEYVDVSMTDQAIAGLNGMQLGDKKLIVQRASVG---AKNPMPMIGAQAPVQIQVPG 345
Query: 398 MALQ-TSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+++ TSG T +VLCL M+
Sbjct: 346 LSMVGTSGPPT-------------EVLCLLNMV 365
>gi|17136764|ref|NP_476891.1| U2 small nuclear riboprotein auxiliary factor 50, isoform A
[Drosophila melanogaster]
gi|386764552|ref|NP_001245710.1| U2 small nuclear riboprotein auxiliary factor 50, isoform D
[Drosophila melanogaster]
gi|195351420|ref|XP_002042232.1| GM13406 [Drosophila sechellia]
gi|195479195|ref|XP_002100800.1| GE15975 [Drosophila yakuba]
gi|195555160|ref|XP_002077042.1| GD24494 [Drosophila simulans]
gi|4033485|sp|Q24562.1|U2AF2_DROME RecName: Full=Splicing factor U2AF 50 kDa subunit; AltName: Full=U2
auxiliary factor 50 kDa subunit; AltName: Full=U2 snRNP
auxiliary factor large subunit
gi|349761|gb|AAA03548.1| RNA binding protein [Drosophila melanogaster]
gi|7293214|gb|AAF48596.1| U2 small nuclear riboprotein auxiliary factor 50, isoform A
[Drosophila melanogaster]
gi|17861976|gb|AAL39465.1| LD03714p [Drosophila melanogaster]
gi|194124075|gb|EDW46118.1| GM13406 [Drosophila sechellia]
gi|194188324|gb|EDX01908.1| GE15975 [Drosophila yakuba]
gi|194203060|gb|EDX16636.1| GD24494 [Drosophila simulans]
gi|220943258|gb|ACL84172.1| U2af50-PA [synthetic construct]
gi|220953438|gb|ACL89262.1| U2af50-PA [synthetic construct]
gi|383293440|gb|AFH07423.1| U2 small nuclear riboprotein auxiliary factor 50, isoform D
[Drosophila melanogaster]
Length = 416
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 161/303 (53%), Gaps = 46/303 (15%)
Query: 131 GQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQA 190
GQ+P S VP+ Q +P V+ TR ARR+YVG +P E+
Sbjct: 66 GQIPA--SVVPDTPQTAVP---------------VVGSTITRQARRLYVGNIPFGVTEEE 108
Query: 191 IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250
+ FF+Q M +G A G V+ IN +K FAF+E R+++E + AMA DGI +G +
Sbjct: 109 MMEFFNQQMHLVGLAQAA-GSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQS 167
Query: 251 VRVRRPTDYNPTLAAALGPG-QPSPNLNLAAVGLASGAIGGA--EGPDRVFVGGLPYYFT 307
+++RRP DY P PG +P + A V +SG I + P ++F+GGLP Y
Sbjct: 168 LKIRRPHDYQPM------PGITDTPAIKPAVV--SSGVISTVVPDSPHKIFIGGLPNYLN 219
Query: 308 ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367
+ Q+KELL SFG L F+LVKD TG SKGY FC Y D ++TD + A LNG+++GDK L
Sbjct: 220 DDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLI 279
Query: 368 VRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGM-NTLGGGMSLFGETLAKVLCLT 426
V+RA+ + ++ + Q + LQ G+ N + G +VLCL
Sbjct: 280 VQRASVGAKNAQNAANT----------TQSVMLQVPGLSNVVTSGPP------TEVLCLL 323
Query: 427 EMM 429
M+
Sbjct: 324 NMV 326
>gi|194893848|ref|XP_001977952.1| GG19328 [Drosophila erecta]
gi|190649601|gb|EDV46879.1| GG19328 [Drosophila erecta]
Length = 416
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 161/303 (53%), Gaps = 46/303 (15%)
Query: 131 GQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQA 190
GQ+P S VP+ Q +P V+ TR ARR+YVG +P E+
Sbjct: 66 GQIPA--SVVPDTPQTAVP---------------VVGSTITRQARRLYVGNIPFGVTEEE 108
Query: 191 IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250
+ FF+Q M +G A G V+ IN +K FAF+E R+++E + AMA DGI +G +
Sbjct: 109 MMEFFNQQMHLVGLAQAA-GSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQS 167
Query: 251 VRVRRPTDYNPTLAAALGPG-QPSPNLNLAAVGLASGAIGGA--EGPDRVFVGGLPYYFT 307
+++RRP DY P PG +P + A V +SG I + P ++F+GGLP Y
Sbjct: 168 LKIRRPHDYQPM------PGITDTPAIKPAVV--SSGVISTVVPDSPHKIFIGGLPNYLN 219
Query: 308 ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367
+ Q+KELL SFG L F+LVKD TG SKGY FC Y D ++TD + A LNG+++GDK L
Sbjct: 220 DDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLI 279
Query: 368 VRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGM-NTLGGGMSLFGETLAKVLCLT 426
V+RA+ + ++ + Q + LQ G+ N + G +VLCL
Sbjct: 280 VQRASVGAKNAQNAANT----------TQSVMLQVPGLSNVVTSGPP------TEVLCLL 323
Query: 427 EMM 429
M+
Sbjct: 324 NMV 326
>gi|386764550|ref|NP_001245709.1| U2 small nuclear riboprotein auxiliary factor 50, isoform C
[Drosophila melanogaster]
gi|383293439|gb|AFH07422.1| U2 small nuclear riboprotein auxiliary factor 50, isoform C
[Drosophila melanogaster]
Length = 360
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 161/303 (53%), Gaps = 46/303 (15%)
Query: 131 GQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQA 190
GQ+P S VP+ Q +P V+ TR ARR+YVG +P E+
Sbjct: 10 GQIPA--SVVPDTPQTAVP---------------VVGSTITRQARRLYVGNIPFGVTEEE 52
Query: 191 IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250
+ FF+Q M +G A G V+ IN +K FAF+E R+++E + AMA DGI +G +
Sbjct: 53 MMEFFNQQMHLVGLAQAA-GSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQS 111
Query: 251 VRVRRPTDYNPTLAAALGPG-QPSPNLNLAAVGLASGAIGGA--EGPDRVFVGGLPYYFT 307
+++RRP DY P PG +P + A V +SG I + P ++F+GGLP Y
Sbjct: 112 LKIRRPHDYQPM------PGITDTPAIKPAVV--SSGVISTVVPDSPHKIFIGGLPNYLN 163
Query: 308 ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367
+ Q+KELL SFG L F+LVKD TG SKGY FC Y D ++TD + A LNG+++GDK L
Sbjct: 164 DDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLI 223
Query: 368 VRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGM-NTLGGGMSLFGETLAKVLCLT 426
V+RA+ + ++ + Q + LQ G+ N + G +VLCL
Sbjct: 224 VQRASVGAKNAQNAANT----------TQSVMLQVPGLSNVVTSGPP------TEVLCLL 267
Query: 427 EMM 429
M+
Sbjct: 268 NMV 270
>gi|403175591|ref|XP_003888994.1| hypothetical protein PGTG_22302 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375171670|gb|EHS64431.1| hypothetical protein PGTG_22302 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 713
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 135/229 (58%), Gaps = 24/229 (10%)
Query: 167 TQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIG----GNSAGPG-----DAVVNVY 217
TQ R ARR+YVG + ANE +A FF+ M +G N G + VV V
Sbjct: 329 TQSFARQARRLYVGNILHTANEMNVAEFFNAKMKELGLLARNNEDGMAISISENPVVAVQ 388
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLN 277
+NHEK +AFVE R EEA++ M+ DGIIF+ A+++RRP DY GP P
Sbjct: 389 VNHEKNYAFVEFRNAEEATHGMSFDGIIFQNQALKIRRPKDYT-------GPDHAGPT-- 439
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN--S 335
G+ S + + P+++F+GGLP Y T+ Q+ ELL+SFG L F+LVKD +G S
Sbjct: 440 -HIPGVVSTNV--PDSPNKIFIGGLPSYLTDDQVMELLKSFGELKSFNLVKDTSSGGHVS 496
Query: 336 KGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQES 384
KG+ FC Y DP +TDIAC LNG+++GD+ L V+RA +K E+E+
Sbjct: 497 KGFAFCEYVDPDLTDIACQGLNGMELGDRYLVVQRAQIGQ-NAKKEKEN 544
>gi|427789501|gb|JAA60202.1| Putative splicing factor u2af large subunit rrm superfamily
[Rhipicephalus pulchellus]
Length = 462
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/271 (38%), Positives = 151/271 (55%), Gaps = 28/271 (10%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P V ++ TR ARR+YVG +P +E+ + +F+ M A G + A PG+ V+ I
Sbjct: 130 PPAAVPIVGGTITRQARRLYVGNIPFGCSEEEMMDYFNAQMHACGFSQA-PGNPVLACQI 188
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
N +K FAF+E R+++E + AMA DGI F+G ++++RRP DY P PG S ++
Sbjct: 189 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPM------PGM-SETPSV 241
Query: 279 AAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
A G+ S + + P ++F+GGLP Y E Q++ELL SFG L F+LVKD TG SKGY
Sbjct: 242 AVPGVISTVV--QDSPHKIFIGGLPNYLNEDQVRELLMSFGQLRAFNLVKDSATGLSKGY 299
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKM 398
FC Y + A TD A LNG+++GDK L V+RA+ + S+ Q +
Sbjct: 300 AFCEYVEVATTDQAIMGLNGMQLGDKKLIVQRASVGAKNSQMNQAPV------------- 346
Query: 399 ALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+Q G+ GG +VLCL ++
Sbjct: 347 QIQVPGLQLQGG-----AGPPTEVLCLMNLV 372
>gi|340780291|pdb|2YH0|A Chain A, Solution Structure Of The Closed Conformation Of Human
U2af65 Tandem Rrm1 And Rrm2 Domains
gi|340780292|pdb|2YH1|A Chain A, Model Of Human U2af65 Tandem Rrm1 And Rrm2 Domains With
Eight-Site Uridine Binding
Length = 198
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 130/202 (64%), Gaps = 10/202 (4%)
Query: 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVE 233
ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN +K FAF+E R+V+
Sbjct: 4 ARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVD 62
Query: 234 EASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEG 293
E + AMA DGIIF+G ++++RRP DY P PG S N ++ G+ S + +
Sbjct: 63 ETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVPGVVSTVV--PDS 113
Query: 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 353
++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY FC Y D VTD A
Sbjct: 114 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 173
Query: 354 AALNGLKMGDKTLTVRRATASS 375
A LNG+++GDK L V+RA+ +
Sbjct: 174 AGLNGMQLGDKKLLVQRASVGA 195
>gi|331243454|ref|XP_003334370.1| splicing factor U2AF subunit [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 600
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 135/229 (58%), Gaps = 24/229 (10%)
Query: 167 TQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIG----GNSAGPG-----DAVVNVY 217
TQ R ARR+YVG + ANE +A FF+ M +G N G + VV V
Sbjct: 216 TQSFARQARRLYVGNILHTANEMNVAEFFNAKMKELGLLARNNEDGMAISISENPVVAVQ 275
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLN 277
+NHEK +AFVE R EEA++ M+ DGIIF+ A+++RRP DY GP P
Sbjct: 276 VNHEKNYAFVEFRNAEEATHGMSFDGIIFQNQALKIRRPKDYT-------GPDHAGPT-- 326
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN--S 335
G+ S + + P+++F+GGLP Y T+ Q+ ELL+SFG L F+LVKD +G S
Sbjct: 327 -HIPGVVSTNV--PDSPNKIFIGGLPSYLTDDQVMELLKSFGELKSFNLVKDTSSGGHVS 383
Query: 336 KGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQES 384
KG+ FC Y DP +TDIAC LNG+++GD+ L V+RA +K E+E+
Sbjct: 384 KGFAFCEYVDPDLTDIACQGLNGMELGDRYLVVQRAQIGQ-NAKKEKEN 431
>gi|195042782|ref|XP_001991497.1| GH12033 [Drosophila grimshawi]
gi|195134983|ref|XP_002011915.1| GI14308 [Drosophila mojavensis]
gi|193901255|gb|EDW00122.1| GH12033 [Drosophila grimshawi]
gi|193909169|gb|EDW08036.1| GI14308 [Drosophila mojavensis]
Length = 416
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 161/302 (53%), Gaps = 44/302 (14%)
Query: 131 GQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQA 190
GQ+P S VP+ Q +P V+ TR ARR+YVG +P E+
Sbjct: 66 GQIPA--SVVPDTPQTAVP---------------VVGSTITRQARRLYVGNIPFGVTEEE 108
Query: 191 IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250
+ FF+Q M +G A G V+ IN +K FAF+E R+++E + AMA DGI +G
Sbjct: 109 MMEFFNQQMHLVGLAQAA-GSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQD 167
Query: 251 VRVRRPTDYNPTLAAALGPG-QPSPNLNLAAVGLASGAIGGA--EGPDRVFVGGLPYYFT 307
+++RRP DY P PG +P + A V +SG I + P ++F+GGLP Y
Sbjct: 168 LKIRRPHDYQPM------PGITDTPAVKPAVV--SSGVISTVVPDSPHKIFIGGLPNYLN 219
Query: 308 ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367
+ Q+KELL SFG L F+LVKD TG SKGY FC Y D ++TD + A LNG+++GDK L
Sbjct: 220 DEQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLI 279
Query: 368 VRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTE 427
V+RA+ + ++ + Q + LQ G++T+ + +VLCL
Sbjct: 280 VQRASVGAKNAQNAANT----------SQSVMLQVPGLSTV-----VTSGPPTEVLCLLN 324
Query: 428 MM 429
M+
Sbjct: 325 MV 326
>gi|328766440|gb|EGF76494.1| hypothetical protein BATDEDRAFT_21058 [Batrachochytrium
dendrobatidis JAM81]
Length = 551
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 133/228 (58%), Gaps = 20/228 (8%)
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFV 227
Q R +R+Y G +P E+ I +F S +G PG+A VN YIN E+ +AFV
Sbjct: 227 QPIARQFKRLYFGNIPVDCIEERILSFASSSYEKLG-LPKDPGNAAVNAYINRERNYAFV 285
Query: 228 EMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGA 287
E R+ EEA+ AMALDG +F+G ++VRRP DYNP AA G QPS + A
Sbjct: 286 EFRSPEEATRAMALDGSLFDGNILKVRRPKDYNPE-AAPDGATQPS----------IAPA 334
Query: 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
E D++FVG +P Y ++ Q++ELL++FG L F L++D TG SKG+ FC Y D
Sbjct: 335 TSAQESLDKIFVGAIPTYLSDDQVQELLKTFGELKTFSLIRDSATGLSKGFAFCEYVDGQ 394
Query: 348 VTDIACAALNGLKMGDKTLTVRRATASS--------GQSKTEQESILA 387
+TD AC LNG+++G+K L V+RA+ S GQS+ ILA
Sbjct: 395 ITDAACQGLNGMELGEKKLIVQRASVGSNKNTISAVGQSQLLPMEILA 442
>gi|383854116|ref|XP_003702568.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like [Megachile
rotundata]
Length = 432
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 108/273 (39%), Positives = 155/273 (56%), Gaps = 35/273 (12%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P V V+ TR ARR+YVG +P E+ + FF+Q M + G + G+ V+ I
Sbjct: 103 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM-HLSGLAQAAGNPVLACQI 161
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP-SPNLN 277
N +K FAF+E R+++E + AMA DGI F+G ++++RRP DY P PG +P++N
Sbjct: 162 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPM------PGMTDNPSMN 215
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
+ G + + P ++F+GGLP Y E Q+KELL SFG L F+LVKD TG SKG
Sbjct: 216 V------PGTV--PDSPHKIFIGGLPNYLNEEQVKELLMSFGQLRAFNLVKDSATGLSKG 267
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQK 397
Y FC Y D ++TD A A LNG+++GDK L V+RA+ + + I AQA I +
Sbjct: 268 YAFCEYVDVSMTDQAIAGLNGMQLGDKKLIVQRASVGA-----KNPMIGAQAPVQIQVPG 322
Query: 398 MALQ-TSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+++ TSG T +VLCL M+
Sbjct: 323 LSMVGTSGPAT-------------EVLCLLNMV 342
>gi|340715832|ref|XP_003396412.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like [Bombus
terrestris]
gi|350417884|ref|XP_003491627.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like isoform 1
[Bombus impatiens]
Length = 432
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 108/273 (39%), Positives = 155/273 (56%), Gaps = 35/273 (12%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P V V+ TR ARR+YVG +P E+ + FF+Q M + G + G+ V+ I
Sbjct: 103 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM-HLSGLAQAAGNPVLACQI 161
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP-SPNLN 277
N +K FAF+E R+++E + AMA DGI F+G ++++RRP DY P PG +P++N
Sbjct: 162 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPM------PGMTDNPSMN 215
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
+ G + + P ++F+GGLP Y E Q+KELL SFG L F+LVKD TG SKG
Sbjct: 216 V------PGTV--PDSPHKIFIGGLPNYLNEEQVKELLMSFGQLRAFNLVKDSATGLSKG 267
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQK 397
Y FC Y D ++TD A A LNG+++GDK L V+RA+ + + I AQA I +
Sbjct: 268 YAFCEYVDVSMTDQAIAGLNGMQLGDKKLIVQRASVGA-----KNPMIGAQAPVQIQVPG 322
Query: 398 MALQ-TSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+++ TSG T +VLCL M+
Sbjct: 323 LSMVGTSGPAT-------------EVLCLLNMV 342
>gi|322792032|gb|EFZ16137.1| hypothetical protein SINV_12499 [Solenopsis invicta]
Length = 344
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 106/274 (38%), Positives = 152/274 (55%), Gaps = 41/274 (14%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P V V+ TR ARR+YVG +P E+ + FF+Q M + G + G+ V+ I
Sbjct: 19 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM-HLSGLAQAAGNPVLACQI 77
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP-SPNLN 277
N +K FAF+E R+++E + AMA DGI F+G ++++RRP DY P PG +P++N
Sbjct: 78 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPM------PGMTDNPSMN 131
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
+ + P ++F+GGLP Y E Q+KELL SFG L F+LVKD TG SKG
Sbjct: 132 VP------------DSPHKIFIGGLPNYLNEEQVKELLMSFGQLRAFNLVKDSATGLSKG 179
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQK 397
Y FC Y D ++TD A A LNG+++GDK L V+RA+ + + I AQA I +
Sbjct: 180 YAFCEYVDVSMTDQAIAGLNGMQLGDKKLIVQRASVGA-----KNPMIGAQAPVQIQVP- 233
Query: 398 MALQTSGMNTLGGGMSLFGET--LAKVLCLTEMM 429
G+S+ G + +VLCL M+
Sbjct: 234 -------------GLSMVGTSGPATEVLCLLNMV 254
>gi|307176032|gb|EFN65791.1| Splicing factor U2AF 50 kDa subunit [Camponotus floridanus]
Length = 432
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 108/273 (39%), Positives = 155/273 (56%), Gaps = 35/273 (12%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P V V+ TR ARR+YVG +P E+ + FF+Q M + G + G+ V+ I
Sbjct: 103 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM-HLSGLAQAAGNPVLACQI 161
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP-SPNLN 277
N +K FAF+E R+++E + AMA DGI F+G ++++RRP DY P PG +P++N
Sbjct: 162 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPM------PGMTDNPSMN 215
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
+ G + + P ++F+GGLP Y E Q+KELL SFG L F+LVKD TG SKG
Sbjct: 216 V------PGTV--PDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSATGLSKG 267
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQK 397
Y FC Y D ++TD A A LNG+++GDK L V+RA+ + + I AQA I +
Sbjct: 268 YAFCEYVDVSMTDQAIAGLNGMQLGDKKLIVQRASVGA-----KNPMIGAQAPVQIQVPG 322
Query: 398 MALQ-TSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+++ TSG T +VLCL M+
Sbjct: 323 LSMVGTSGPAT-------------EVLCLLNMV 342
>gi|350417886|ref|XP_003491628.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like isoform 2
[Bombus impatiens]
Length = 428
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 153/273 (56%), Gaps = 39/273 (14%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P V V+ TR ARR+YVG +P E+ + FF+Q M + G + G+ V+ I
Sbjct: 103 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM-HLSGLAQAAGNPVLACQI 161
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP-SPNLN 277
N +K FAF+E R+++E + AMA DGI F+G ++++RRP DY P PG +P++N
Sbjct: 162 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPM------PGMTDNPSMN 215
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
+ + P ++F+GGLP Y E Q+KELL SFG L F+LVKD TG SKG
Sbjct: 216 VP------------DSPHKIFIGGLPNYLNEEQVKELLMSFGQLRAFNLVKDSATGLSKG 263
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQK 397
Y FC Y D ++TD A A LNG+++GDK L V+RA+ + + I AQA I +
Sbjct: 264 YAFCEYVDVSMTDQAIAGLNGMQLGDKKLIVQRASVGA-----KNPMIGAQAPVQIQVPG 318
Query: 398 MALQ-TSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+++ TSG T +VLCL M+
Sbjct: 319 LSMVGTSGPAT-------------EVLCLLNMV 338
>gi|332026432|gb|EGI66560.1| Splicing factor U2AF 50 kDa subunit [Acromyrmex echinatior]
Length = 435
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 153/273 (56%), Gaps = 39/273 (14%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P V V+ TR ARR+YVG +P E+ + FF+Q M + G + G+ V+ I
Sbjct: 110 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM-HLSGLAQAAGNPVLACQI 168
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP-SPNLN 277
N +K FAF+E R+++E + AMA DGI F+G ++++RRP DY P PG +P++N
Sbjct: 169 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPM------PGMTDNPSMN 222
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
+ + P ++F+GGLP Y E Q+KELL SFG L F+LVKD TG SKG
Sbjct: 223 VP------------DSPHKIFIGGLPNYLNEEQVKELLMSFGQLRAFNLVKDSATGLSKG 270
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQK 397
Y FC Y D ++TD A A LNG+++GDK L V+RA+ + + I AQA I +
Sbjct: 271 YAFCEYVDVSMTDQAIAGLNGMQLGDKKLIVQRASVGA-----KNPMIGAQAPVQIQVPG 325
Query: 398 MALQ-TSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+++ TSG T +VLCL M+
Sbjct: 326 LSMVGTSGPAT-------------EVLCLLNMV 345
>gi|390341852|ref|XP_792919.3| PREDICTED: splicing factor U2AF 50 kDa subunit-like
[Strongylocentrotus purpuratus]
Length = 386
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 105/270 (38%), Positives = 151/270 (55%), Gaps = 39/270 (14%)
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVE 228
Q TR ARR+YVG +P E A+ FF+ M +G A PG V+ V +NH+K FAF+E
Sbjct: 57 QMTRQARRLYVGNIPFGVTEDAMVEFFNGKMHNVGLAQA-PGPPVLAVQVNHDKNFAFLE 115
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
R+VEE + AMA DGI+F+ A+++RRP DY + P P G+ S +
Sbjct: 116 FRSVEETTQAMAFDGILFQNQALKIRRPKDYQAIPGMSATPTVHVP-------GVVSTVV 168
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
+ P+++F+GGLP Y + Q+KELL SFG L F+LVKD T SKGY FC Y + +
Sbjct: 169 --QDSPNKIFIGGLPNYLNDDQVKELLSSFGPLKAFNLVKDSATSLSKGYAFCEYVETNL 226
Query: 349 TDI-------ACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQ-HIAIQKMAL 400
TD+ A A LNG+++G+K L V+RA+ + ++ + Q QQ I I ++L
Sbjct: 227 TDLGWETTDKAIAGLNGMQLGEKKLIVQRASVGA-------KNAMNQGQQVQINIPGLSL 279
Query: 401 Q-TSGMNTLGGGMSLFGETLAKVLCLTEMM 429
T+G NT ++LCL M+
Sbjct: 280 PGTTGPNT-------------EILCLMNMV 296
>gi|395331854|gb|EJF64234.1| hypothetical protein DICSQDRAFT_144911 [Dichomitus squalens
LYAD-421 SS1]
Length = 587
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 113/318 (35%), Positives = 173/318 (54%), Gaps = 28/318 (8%)
Query: 71 DYNRDKERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRR--SGFDMAPPAAAMLPGAA 128
D D+ R +HR + +R RS + P +P ++R SG+D+ P A
Sbjct: 126 DERGDRRGRGKHREGLGTPER---RSPT-PPDAAPLSQRKRKASGWDVHAPGYEQY--TA 179
Query: 129 VPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQV------MTQQATRHARRVYVGGL 182
+ + G+ +P + +P G P MPV + +R +RR+Y+G +
Sbjct: 180 MQAKQTGL-FNLPGANRTQIPPILAIPGLPPPMPVSTFGMGTGVNPNLSRQSRRLYIGSI 238
Query: 183 PPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALD 242
P NEQ + FF+ M + + PG+ V+ V N+EK +AFVE R+ E+A+ AMA D
Sbjct: 239 TPDINEQNLTDFFNSKMKEMNLGTGAPGNPVLAVQCNYEKNYAFVEFRSAEDATAAMAFD 298
Query: 243 GIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGL 302
GIIF +++RRP DY GP +PN+++ G+ S + + +++FVGGL
Sbjct: 299 GIIFLNGPLKIRRPKDYG-------GPDVIAPNMHVP--GVVSTNV--PDSANKIFVGGL 347
Query: 303 PYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG 362
P Y E Q+ ELL SFG L F+LV++ G SKG+ F Y DP+VTD+A +L+G+++G
Sbjct: 348 PTYLNEEQVMELLSSFGELKAFNLVRENGNGPSKGFAFFEYVDPSVTDVAIQSLSGMELG 407
Query: 363 DKTLTVRRAT--ASSGQS 378
DK L V+RA+ A GQS
Sbjct: 408 DKYLVVQRASVGAKPGQS 425
>gi|449547880|gb|EMD38847.1| hypothetical protein CERSUDRAFT_81656 [Ceriporiopsis subvermispora
B]
Length = 476
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 141/235 (60%), Gaps = 19/235 (8%)
Query: 156 GAFPLMPVQVM------TQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP 209
G P MPVQ +R +RR+Y+G + P NEQ +A FF+ M + + P
Sbjct: 95 GLPPPMPVQSFGMGIGGNPNLSRQSRRLYIGSITPDINEQNLAEFFNGKMKEMDIGTGAP 154
Query: 210 GDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGP 269
G+ V+ V N+EK +AFVE R+ E+A+ AMA DGIIF +++RRP DY GP
Sbjct: 155 GNPVLAVQCNYEKNYAFVEFRSAEDATAAMAFDGIIFLNGPLKIRRPKDYG-------GP 207
Query: 270 GQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD 329
+P +++ G+ S + + ++VFVGGLP Y E Q+ ELL+SFG L F+LV++
Sbjct: 208 DVLAPMMHVP--GVVSTNV--PDSANKVFVGGLPMYLNEEQVMELLKSFGELKAFNLVRE 263
Query: 330 RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT--ASSGQSKTEQ 382
G SKG+ F Y DP+VTD+A +L+G+++GDK L V+RA+ A GQS ++
Sbjct: 264 NGNGPSKGFAFFEYVDPSVTDVAIQSLSGMELGDKYLVVQRASVGAKPGQSPIDE 318
>gi|270011684|gb|EFA08132.1| hypothetical protein TcasGA2_TC005736 [Tribolium castaneum]
Length = 432
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 101/273 (36%), Positives = 148/273 (54%), Gaps = 33/273 (12%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P V V+ TR ARR+YVG +P E+ + FF+Q M + G + G+ V+ I
Sbjct: 101 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM-HLSGLAQAAGNPVLACQI 159
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
N +K FAF+E R+++E + AMA DGI F+G ++++RRP DY QP P +
Sbjct: 160 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPMPGMAE 208
Query: 279 AAVGLASGAIGGA--EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSK 336
+++ + +G I + P ++F+GGLP Y E Q+KELL SFG L F+LVKD G SK
Sbjct: 209 SSISVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDTAFGLSK 268
Query: 337 GYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQ 396
GY F Y D +TD A A LNG+++GDK L V+RA+ A+ I
Sbjct: 269 GYAFAEYIDITMTDQAIAGLNGMQLGDKRLIVQRASVG--------------AKNATVIP 314
Query: 397 KMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ +Q G++ +G +VLCL M+
Sbjct: 315 AVQIQVPGLSLVGA-----SGPPTEVLCLLNMV 342
>gi|307195151|gb|EFN77144.1| Splicing factor U2AF 50 kDa subunit [Harpegnathos saltator]
Length = 402
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/274 (38%), Positives = 151/274 (55%), Gaps = 41/274 (14%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P V V+ TR ARR+YVG +P E+ + FF+Q M + G + G+ V+ I
Sbjct: 77 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM-HLSGLAQAAGNPVLACQI 135
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP-SPNLN 277
N +K FAF+E R+++E + AMA DGI F+G ++++RRP DY P PG +P++N
Sbjct: 136 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPM------PGMTDNPSMN 189
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
+ + P ++F+GGLP Y E Q+KELL SFG L F+LVKD TG SKG
Sbjct: 190 VP------------DSPHKIFIGGLPNYLNEEQVKELLMSFGQLRAFNLVKDSATGLSKG 237
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQK 397
Y FC Y D ++TD A A LNG+++GDK L V+RA+ + + I QA I +
Sbjct: 238 YAFCEYVDVSMTDQAIAGLNGMQLGDKKLIVQRASVGA-----KNPMIGTQAPVQIQVP- 291
Query: 398 MALQTSGMNTLGGGMSLFGET--LAKVLCLTEMM 429
G+S+ G + +VLCL M+
Sbjct: 292 -------------GLSMVGSSGPATEVLCLLNMV 312
>gi|91088649|ref|XP_974465.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein auxiliary
factor 2 [Tribolium castaneum]
Length = 450
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/273 (36%), Positives = 148/273 (54%), Gaps = 33/273 (12%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P V V+ TR ARR+YVG +P E+ + FF+Q M + G + G+ V+ I
Sbjct: 119 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM-HLSGLAQAAGNPVLACQI 177
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
N +K FAF+E R+++E + AMA DGI F+G ++++RRP DY QP P +
Sbjct: 178 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPMPGMAE 226
Query: 279 AAVGLASGAIGGA--EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSK 336
+++ + +G I + P ++F+GGLP Y E Q+KELL SFG L F+LVKD G SK
Sbjct: 227 SSISVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDTAFGLSK 286
Query: 337 GYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQ 396
GY F Y D +TD A A LNG+++GDK L V+RA+ A+ I
Sbjct: 287 GYAFAEYIDITMTDQAIAGLNGMQLGDKRLIVQRASVG--------------AKNATVIP 332
Query: 397 KMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ +Q G++ +G +VLCL M+
Sbjct: 333 AVQIQVPGLSLVGA-----SGPPTEVLCLLNMV 360
>gi|409040470|gb|EKM49957.1| hypothetical protein PHACADRAFT_264412 [Phanerochaete carnosa
HHB-10118-sp]
Length = 575
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 172/306 (56%), Gaps = 26/306 (8%)
Query: 81 RHRSRSHSSDRFRNRSKSLSPSRSPSKSKRR-SGFDMAPPAAAMLPGAAVPGQLPGVPSA 139
+HR + +R RS + S + S S+ KR+ SG+D+ P A+ + G+
Sbjct: 127 KHREGLGTPER---RSPTPSDAVSLSQRKRKASGWDIHAPGYEQY--TAMQAKQTGL-FN 180
Query: 140 VPEMAQNMLPFGATQLGAFPLMPVQV------MTQQATRHARRVYVGGLPPLANEQAIAT 193
+P + +P G P MPVQ + +R +RR+Y+G + P NEQ +A
Sbjct: 181 LPGANRTQIPPILAVPGLPPPMPVQSFGMGMGVNPNLSRQSRRLYIGSITPEINEQNLAD 240
Query: 194 FFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRV 253
FF++ M + + PG+ V+ V N+EK +AFVE R+ E+A+ AMA DGIIF +++
Sbjct: 241 FFNEKMKEMSIGTGAPGNPVLAVQCNYEKNYAFVEFRSAEDATAAMAFDGIIFLSGPLKI 300
Query: 254 RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKE 313
RRP DY G +P++++ G+ S + + ++VFVGGLP Y E Q+ E
Sbjct: 301 RRPKDYG-------GSENLAPSMHVP--GVVSTNV--PDSINKVFVGGLPPYLNEEQVME 349
Query: 314 LLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT- 372
LL SFG L F+LV++ G SKG+ F Y DPAVTD+A +LN +++GDK L V+RA+
Sbjct: 350 LLTSFGDLKAFNLVRENGNGPSKGFAFFEYVDPAVTDVAIQSLNEMELGDKYLVVQRASV 409
Query: 373 -ASSGQ 377
A +GQ
Sbjct: 410 GAKNGQ 415
>gi|443898020|dbj|GAC75358.1| splicing factor U2AF, large subunit [Pseudozyma antarctica T-34]
Length = 699
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/246 (39%), Positives = 145/246 (58%), Gaps = 13/246 (5%)
Query: 132 QLPGV-PSAVPEMAQNMLPFGATQLGAFPLMPVQVM-TQQATRHARRVYVGGLPPLANEQ 189
Q PG+ P + Q PF P Q + T + R ARR+YVG + ANE
Sbjct: 284 QHPGMYPQDGQQYTQGQPPFAGQYQQGHPASHNQALATADSGRQARRLYVGNITHQANEP 343
Query: 190 AIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249
++ FF++ M + + PG+ V+ +N +K +AFVE R +EA+NAM+ DGI+F+G
Sbjct: 344 SMVAFFNEQMLKLKLGTE-PGEPAVSAQVNVDKGYAFVEFRHPDEATNAMSFDGIVFQGQ 402
Query: 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTET 309
++++RRP DY GP P+ ++ G+ S + + P ++FVGGLP Y T+
Sbjct: 403 SLKIRRPKDYT-------GPDVRPPS-SIHVPGVISTNV--PDSPFKIFVGGLPTYLTDD 452
Query: 310 QIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369
Q+ ELL++FG L F+LVKD T SKG+ FC Y D A+TD+AC LNG+++GD+ L V+
Sbjct: 453 QVIELLQAFGELRSFNLVKDPATNASKGFAFCEYVDTALTDLACQGLNGMELGDRNLVVQ 512
Query: 370 RATASS 375
RA+ S
Sbjct: 513 RASVGS 518
>gi|66520699|ref|XP_623055.1| PREDICTED: splicing factor U2AF 50 kDa subunit [Apis mellifera]
Length = 432
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 154/273 (56%), Gaps = 35/273 (12%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P V V+ TR ARR+YVG +P E+ + FF+Q M + G + G+ V+ I
Sbjct: 103 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM-HLSGLAQAAGNPVLACQI 161
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP-SPNLN 277
N +K FAF+E R+++E + AMA D I F+G ++++RRP DY P PG +P++N
Sbjct: 162 NLDKNFAFLEFRSIDETTQAMAFDSINFKGQSLKIRRPHDYQPM------PGMTDNPSMN 215
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
+ G + + P ++F+GGLP Y E Q+KELL SFG L F+LVKD TG SKG
Sbjct: 216 V------PGTV--PDSPHKIFIGGLPNYLNEEQVKELLMSFGQLRAFNLVKDSATGLSKG 267
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQK 397
Y FC Y D ++TD A A LNG+++GDK L V+RA+ + + I AQA I +
Sbjct: 268 YAFCEYVDVSMTDQAIAGLNGMQLGDKKLIVQRASVGA-----KNPMIGAQAPVQIQVPG 322
Query: 398 MALQ-TSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+++ TSG T +VLCL M+
Sbjct: 323 LSMVGTSGPAT-------------EVLCLLNMV 342
>gi|392572624|gb|EIW65769.1| hypothetical protein TREMEDRAFT_41238 [Tremella mesenterica DSM
1558]
Length = 596
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/269 (37%), Positives = 147/269 (54%), Gaps = 42/269 (15%)
Query: 130 PGQLP-----GVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPP 184
PG++P G+PSA+ +A + P GA L R A+R+YVGG+
Sbjct: 201 PGRVPPPPELGIPSAL--IAGSFPPPGANGL----------------RQAKRIYVGGITE 242
Query: 185 LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGI 244
+ ++ FF+ M+ G PGD + V +NHEK FAF+E R+ EEAS+A+ LD +
Sbjct: 243 SMTDASLLEFFNTTMSERGFTLEIPGDPIGAVQVNHEKAFAFLEFRSAEEASSALKLDNV 302
Query: 245 IFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPY 304
+FE V +RV+RP DY L P Q + GA ++ P+++F+GGLP
Sbjct: 303 MFEDVPLRVKRPKDYT-----GLDPLQHT----------MGGAQAMSDSPNKLFIGGLPT 347
Query: 305 YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK 364
Y E Q+ ELL+SFG L F+LVKD D+ +KG+ F Y DP+ TD+A + LN +GD+
Sbjct: 348 YLDEAQVMELLKSFGELRSFNLVKDPDSSENKGFAFAEYTDPSNTDMAISGLNNFSLGDR 407
Query: 365 TLTVRRATASSGQSKTE----QESILAQA 389
L V+RA T+ ES LA++
Sbjct: 408 ILVVQRAAVGRASGTTDAIPGSESFLAKS 436
>gi|328862941|gb|EGG12041.1| hypothetical protein MELLADRAFT_41759 [Melampsora larici-populina
98AG31]
Length = 397
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/231 (41%), Positives = 132/231 (57%), Gaps = 28/231 (12%)
Query: 167 TQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDA---------VVNVY 217
TQ R ARR+YVG + ANE +A FF+ M +G D VV V
Sbjct: 26 TQSFARQARRLYVGNILHTANEMNVAEFFNAKMKELGLLVRNGEDGSMISISENPVVAVQ 85
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALG--PGQPSPN 275
+NHEK +AFVE R EEA++ M+ DGIIF+ A+++RRP DY T + PG S N
Sbjct: 86 VNHEKNYAFVEFRNAEEATHGMSFDGIIFQNQALKIRRPKDYTGTEHTSTNHIPGVVSTN 145
Query: 276 LNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN- 334
+ + P+++F+GGLP Y T+ Q+ ELL+SFG L F+LVKD +G
Sbjct: 146 V--------------PDSPNKIFIGGLPSYLTDDQVMELLKSFGELKSFNLVKDTSSGGQ 191
Query: 335 -SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQES 384
SKG+ FC Y D +TDIAC LNG+++GD+ L V+RA +K E+E+
Sbjct: 192 VSKGFAFCEYVDSDLTDIACQGLNGMELGDRYLVVQRAQIGQ-NAKKEKEN 241
>gi|380016747|ref|XP_003692335.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like [Apis florea]
Length = 428
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 152/273 (55%), Gaps = 39/273 (14%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P V V+ TR ARR+YVG +P E+ + FF+Q M + G + G+ V+ I
Sbjct: 103 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM-HLSGLAQAAGNPVLACQI 161
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP-SPNLN 277
N +K FAF+E R+++E + AMA D I F+G ++++RRP DY P PG +P++N
Sbjct: 162 NLDKNFAFLEFRSIDETTQAMAFDSINFKGQSLKIRRPHDYQPM------PGMTDNPSMN 215
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
+ + P ++F+GGLP Y E Q+KELL SFG L F+LVKD TG SKG
Sbjct: 216 VP------------DSPHKIFIGGLPNYLNEEQVKELLMSFGQLRAFNLVKDSATGLSKG 263
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQK 397
Y FC Y D ++TD A A LNG+++GDK L V+RA+ + + I AQA I +
Sbjct: 264 YAFCEYVDVSMTDQAIAGLNGMQLGDKKLIVQRASVGA-----KNPMIGAQAPVQIQVPG 318
Query: 398 MALQ-TSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+++ TSG T +VLCL M+
Sbjct: 319 LSMVGTSGPAT-------------EVLCLLNMV 338
>gi|194756144|ref|XP_001960339.1| GF13310 [Drosophila ananassae]
gi|190621637|gb|EDV37161.1| GF13310 [Drosophila ananassae]
Length = 434
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 150/272 (55%), Gaps = 35/272 (12%)
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP-GDAVVNVYINHEKKFAFVE 228
TR ARR+YVG +P E+ + FF+Q + A+G +S G AV+ N EK FAF+E
Sbjct: 93 VTRQARRLYVGNIPFGVTEEEMMGFFNQQLIALGSSSLKTDGKAVLTCQTNLEKNFAFLE 152
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP--------SPNLNLAA 280
R+++EA+ A+ DGI+F G +++RRP DY+P A++ +P SP + ++
Sbjct: 153 FRSMDEATQAINFDGIVFRGQTLKIRRPHDYHP--VASISCSEPGFATTTMTSPQIVVST 210
Query: 281 VG---LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
G + S + + P ++++GGLP ETQIKELL SFG L GF+LVKD +T SKG
Sbjct: 211 TGPNHVISTLV--PDSPQKIYIGGLPTCLNETQIKELLLSFGQLKGFNLVKDANTSLSKG 268
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQK 397
+ F Y DP VT+ A A LNG+++GD+ L V+R+ A S +
Sbjct: 269 FAFFEYVDPLVTEQAIAGLNGMQLGDRKLVVQRSIAGGRNSG--------------GVPA 314
Query: 398 MALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
LQ G+ + E+ +VLCL M+
Sbjct: 315 TVLQVPGLTAIPN-----TESPTEVLCLLNMV 341
>gi|449669310|ref|XP_004206989.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Hydra
magnipapillata]
Length = 480
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 137/231 (59%), Gaps = 10/231 (4%)
Query: 160 LMPVQVMTQ--QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
++P + Q Q T ARR+Y G LP E + FF+ M + PG+ V+
Sbjct: 143 VIPATALPQGAQMTMQARRLYCGNLPFGITEDLMVDFFNAKMRE-SDMARQPGNPVLACQ 201
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLN 277
IN EK FAF+E R+VEE + AMA DGII +G A+++RRP DY P + G P+
Sbjct: 202 INLEKNFAFLEFRSVEETTLAMAFDGIILQGQALKIRRPKDYQP-IPGINGMAYPTLFAE 260
Query: 278 LAAV---GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
A G+ S + ++ ++VFVGGLP Y E Q+KELL +FG L F+LVKD TG
Sbjct: 261 SQATHIPGVVSTVV--SDTINKVFVGGLPNYLNEDQVKELLSTFGELRAFNLVKDSATGL 318
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESI 385
SKGY FC Y D +TD+A A +NG+++GDK L V+RA+ S ++ T Q +I
Sbjct: 319 SKGYAFCEYVDIGITDVAIAGMNGMQLGDKKLIVQRASVGS-KTMTAQLNI 368
>gi|392565476|gb|EIW58653.1| hypothetical protein TRAVEDRAFT_37512 [Trametes versicolor
FP-101664 SS1]
Length = 548
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 162/309 (52%), Gaps = 46/309 (14%)
Query: 91 RFRNRSKSLSPSRSPSKSKRR---SGFDMAPPA----AAM---------LPGA---AVPG 131
R +S +PS + S+R+ SG+D+ P AM LPGA +P
Sbjct: 100 RVMTTRRSPTPSDATPLSQRKRKASGWDVHAPGYEQYTAMQAKQTGLFNLPGANRTQIPP 159
Query: 132 QLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAI 191
L +P P M N G G P +R +RR+Y+G + P NEQ +
Sbjct: 160 IL-AIPGLPPPMPVNTFGMGT---GVNP---------NLSRQSRRLYIGSITPDINEQNL 206
Query: 192 ATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251
FF+ M + + PG+ V+ V N+EK +AFVE R+ E+A+ AMA DGIIF +
Sbjct: 207 TDFFNSKMKEMNLGTGAPGNPVLAVQCNYEKNYAFVEFRSAEDATAAMAFDGIIFLNGPL 266
Query: 252 RVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQI 311
++RRP DY G P N+ G+ S + + +++FVGGLP Y E Q+
Sbjct: 267 KIRRPKDY----------GGPDMLANMHVPGVVSTNV--PDSANKIFVGGLPTYLNEEQV 314
Query: 312 KELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
ELL SFG L F+LV++ G SKG+ F Y DP+VTD+A +L+G+++GDK L V+RA
Sbjct: 315 MELLSSFGELKAFNLVRENGNGPSKGFAFFEYVDPSVTDVAIPSLSGMELGDKYLVVQRA 374
Query: 372 T--ASSGQS 378
+ A GQS
Sbjct: 375 SVGAKPGQS 383
>gi|332375140|gb|AEE62711.1| unknown [Dendroctonus ponderosae]
Length = 374
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 150/275 (54%), Gaps = 37/275 (13%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P V V+ TR ARR+YVG +P E + +F+Q M + G + G+ V+ I
Sbjct: 102 PQAAVPVVGSTITRQARRLYVGNIPFGVTEDEMMEYFNQQM-HLSGLAQAAGNPVLACQI 160
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
N +K FAF+E R+++E + AMA DGI F+G ++++RRP DY QP P ++
Sbjct: 161 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPMPGMSE 209
Query: 279 AAVGLASGAIGGA--EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSK 336
++ + +G I + P ++F+GGLP Y E Q+KELL SFG L F+LVKD G SK
Sbjct: 210 NSISVPAGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDTAFGLSK 269
Query: 337 GYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQ 396
GY F Y D ++TD A A LNG+++GDK L V+RA+ + + ++L Q +
Sbjct: 270 GYAFAEYIDISMTDQAIAGLNGMQLGDKRLIVQRASVGAKNA-----TVLPAVQIQVP-- 322
Query: 397 KMALQTSGMNTLGGGMSLFGET--LAKVLCLTEMM 429
G+SL G + +VLCL M+
Sbjct: 323 --------------GLSLVGASGPPTEVLCLLNMV 343
>gi|302685922|ref|XP_003032641.1| hypothetical protein SCHCODRAFT_75908 [Schizophyllum commune H4-8]
gi|300106335|gb|EFI97738.1| hypothetical protein SCHCODRAFT_75908 [Schizophyllum commune H4-8]
Length = 556
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 134/206 (65%), Gaps = 12/206 (5%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
+R +RR+Y+G + P NE +A FF+ MT + + GPG+ V+ V N+EK +AFVE R
Sbjct: 190 SRQSRRLYIGSITPEINEHNLAEFFNSKMTEMNIGTGGPGNPVLAVQCNYEKNYAFVEFR 249
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
+ ++A+ AMA DGIIF +++RRP DY+ ++A+A P +++ G+ S +
Sbjct: 250 SADDATAAMAFDGIIFLNGPLKIRRPKDYDISVASA-------PMIHVP--GIISTNV-- 298
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSK-GYGFCVYQDPAVT 349
+ +++FVGGLP Y E Q++ELL SFG L F+LV++ TG SK GY F Y DP VT
Sbjct: 299 PDSANKIFVGGLPAYLNEEQVQELLTSFGELKAFNLVRETGTGASKQGYAFFEYVDPNVT 358
Query: 350 DIACAALNGLKMGDKTLTVRRATASS 375
D+A +LNG+++GD+ L V+RA+ +
Sbjct: 359 DVAIQSLNGMELGDRFLVVQRASVGA 384
>gi|219116422|ref|XP_002179006.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409773|gb|EEC49704.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 325
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 129/203 (63%), Gaps = 6/203 (2%)
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVE 228
Q TRHARR+YVG LPP E AI F + + I + D V++ YINHE++F FVE
Sbjct: 2 QQTRHARRLYVGNLPPHITEDAIHVEFRRAI-EIASPTPLSEDPVLSTYINHERRFCFVE 60
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
+TVE A+ M LDG+ +GV V+V+RP DYN +A + P P L+++ +G+ SG +
Sbjct: 61 FKTVEMATACMNLDGLHVQGVPVKVKRPNDYNANMAPKIHPSA-LPPLDVSKLGIVSGTV 119
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLV-KDRDTGNSKGYGFCVYQDPA 347
+GP+++F+GGL Y+ ++Q+ ELL++FG + F LV D ++ SKGY F Y DP
Sbjct: 120 --EDGPNKIFIGGLHYHLQDSQVMELLQAFGKIKAFHLVSNDPESNMSKGYCFVEYADPN 177
Query: 348 VTDIACAALNGLKMGD-KTLTVR 369
+T IA LNG+ +G+ K LT R
Sbjct: 178 ITPIAVQGLNGMDIGNGKALTAR 200
>gi|426244214|ref|XP_004015921.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Ovis aries]
Length = 471
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 123/331 (37%), Positives = 174/331 (52%), Gaps = 33/331 (9%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFP 159
RSP K K R +D+ PP + P Q + +A A +LP A
Sbjct: 79 RSPRHEKKKKVRKYWDVPPPGFEHI----TPMQYKAMQAAGQIPATALLPTMTPDGLAVT 134
Query: 160 LMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN 219
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN
Sbjct: 135 PTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQIN 193
Query: 220 HEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLA 279
+K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++
Sbjct: 194 QDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVY 246
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
G+ S + G+ ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY
Sbjct: 247 VPGVVSTVVPGSA--HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYA 304
Query: 340 FCVYQDPAVTD-IACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKM 398
FC Y D VTD ++ A + +G R A +SS + T Q + +Q
Sbjct: 305 FCEYVDINVTDQVSPAPAHPALLGSPLRAGRGACSSSPFASTIN-------QTPVTLQVP 357
Query: 399 ALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
L +S + +GG + +VLCL M+
Sbjct: 358 GLMSSQVQ-MGGHPT-------EVLCLMNMV 380
>gi|384496094|gb|EIE86585.1| hypothetical protein RO3G_11296 [Rhizopus delemar RA 99-880]
Length = 502
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 124/212 (58%), Gaps = 21/212 (9%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
P Q M + ++++YVG +P +E + FF+ + + VV V INHE
Sbjct: 182 PPQRMEDATPKQSKKLYVGQIPSTTDEVTLCDFFNATIR----HELQDKTPVVGVQINHE 237
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K FAF+E T ++A+ M LDGI F+G +++RRP Y P P + P
Sbjct: 238 KNFAFIEFHTSQQATACMVLDGISFQGNTLKIRRPNHYQP-------PEEQVP------- 283
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
GL++ + P++VFVGGLP Y T+ Q+ ELL SFG L F+LVKD TG +KG+ FC
Sbjct: 284 GLSTNV---PDTPNKVFVGGLPVYLTDNQVMELLTSFGELRAFNLVKDTATGANKGFAFC 340
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
Y DP+VTD+AC LNG+++GDK L V+RA+
Sbjct: 341 EYADPSVTDLACQGLNGMELGDKKLIVQRASV 372
>gi|403413555|emb|CCM00255.1| predicted protein [Fibroporia radiculosa]
Length = 582
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 135/230 (58%), Gaps = 19/230 (8%)
Query: 156 GAFPLMPVQVM------TQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP 209
G P MPVQ +R +RR+Y+G + P NEQ +A FF+ M + + GP
Sbjct: 202 GLPPPMPVQSFGMGIGGNPNLSRQSRRLYIGSITPDINEQNLADFFNSKMKEMSIGTGGP 261
Query: 210 GDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGP 269
G+ V+ V N+EK +AFVE R+ E+A+ AMA DGIIF +++RRP DY
Sbjct: 262 GNPVLAVQCNYEKNYAFVEFRSAEDATAAMAFDGIIFINGPLKIRRPKDYG--------- 312
Query: 270 GQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD 329
G S ++ G+ S + + +++FVGGLP Y E Q+ ELL+SFG L F+LV++
Sbjct: 313 GMDSIAPSMHVPGVVSTNV--PDSINKIFVGGLPTYLNEEQVMELLKSFGDLKAFNLVRE 370
Query: 330 RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT--ASSGQ 377
G SKG+ F Y DP VTD+A +L+G+++GDK L V+RA+ A GQ
Sbjct: 371 NGNGPSKGFAFFEYVDPGVTDVAIQSLSGMELGDKFLVVQRASVGAKPGQ 420
>gi|112490659|pdb|2G4B|A Chain A, Structure Of U2af65 Variant With Polyuridine Tract
Length = 172
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/199 (45%), Positives = 121/199 (60%), Gaps = 30/199 (15%)
Query: 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVE 233
ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN +K FAF+E R+V+
Sbjct: 4 ARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVD 62
Query: 234 EASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEG 293
E + AMA DGIIF+G ++++RRP DY QP P G
Sbjct: 63 ETTQAMAFDGIIFQGQSLKIRRPHDY-----------QPLP------------------G 93
Query: 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 353
++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY FC Y D VTD A
Sbjct: 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 153
Query: 354 AALNGLKMGDKTLTVRRAT 372
A LNG+++GDK L V+RA+
Sbjct: 154 AGLNGMQLGDKKLLVQRAS 172
>gi|170053756|ref|XP_001862821.1| splicing factor U2AF 50 kDa subunit [Culex quinquefasciatus]
gi|167874130|gb|EDS37513.1| splicing factor U2AF 50 kDa subunit [Culex quinquefasciatus]
Length = 382
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 129/221 (58%), Gaps = 18/221 (8%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P V V+ TR ARR+YVG +P E+ + FF+Q M + G + G+ V+ I
Sbjct: 115 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQMH-LSGLAQAAGNPVLACQI 173
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
N +K FAF+E R+++E + AMA DGI F+G ++++RRP DY QP P +
Sbjct: 174 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPMPGMTD 222
Query: 279 AAVGLASGAIGGA------EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
+AV G + P ++F+GGLP Y E Q+KELL SFG L F+LVKD T
Sbjct: 223 SAVAPVQEKFSGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLLSFGQLKAFNLVKDAAT 282
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
G SKGY F Y + ++TD A A LNG+++GDK L V+RA+
Sbjct: 283 GLSKGYAFAEYVEYSITDQAIAGLNGMQLGDKKLIVQRASV 323
>gi|358059688|dbj|GAA94557.1| hypothetical protein E5Q_01209 [Mixia osmundae IAM 14324]
Length = 564
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/301 (37%), Positives = 157/301 (52%), Gaps = 37/301 (12%)
Query: 93 RNRSKSLSPSRSPSKSKRRS----------GFDMAPPAAAMLPGA-AVPGQLPGVPSAVP 141
R + +P + SKRR GF+ A + G +PGQ GV P
Sbjct: 133 REEVREKTPENTIPISKRRRAQTAWDVRPIGFETVSAETARMSGHFLLPGQ-NGVVRFPP 191
Query: 142 EMAQNMLPFGATQL-----GAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFS 196
+ FG + A P+ VQ + A R RR+YVG + P A+EQ + FF+
Sbjct: 192 GFHEGRGAFGGLNMSGAGSAAAPMGGVQPIISFA-RQQRRLYVGNIMPTADEQNVTEFFN 250
Query: 197 QVMTAIGGN------SAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250
M G + D VV+V +NHEK +AFVE R+ EEAS+AM+ DGI+F+
Sbjct: 251 AKMRENGLSLDDKKVDVQTADPVVSVQVNHEKSYAFVEFRSPEEASSAMSFDGIVFQDQQ 310
Query: 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQ 310
+++RRP DY G S +L V ++S + P++VFVGGLP Y + Q
Sbjct: 311 LKIRRPKDYT---------GDESGGTHLPGV-ISSNV---PDTPNKVFVGGLPSYLDDEQ 357
Query: 311 IKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370
+ ELL SFG L F+LVK+ SKG+ FC Y DP VTD ACA LNG+++GD+ L V+R
Sbjct: 358 VLELLSSFGELRSFNLVKEGPQNASKGFAFCEYADPNVTDAACAGLNGMEIGDRYLVVQR 417
Query: 371 A 371
A
Sbjct: 418 A 418
>gi|449802099|pdb|3VAF|A Chain A, Structure Of U2af65 Variant With Bru3 Dna
gi|449802100|pdb|3VAF|B Chain B, Structure Of U2af65 Variant With Bru3 Dna
gi|449802101|pdb|3VAG|A Chain A, Structure Of U2af65 Variant With Bru3c2 Dna
gi|449802102|pdb|3VAG|B Chain B, Structure Of U2af65 Variant With Bru3c2 Dna
gi|449802103|pdb|3VAH|A Chain A, Structure Of U2af65 Variant With Bru3c4 Dna
gi|449802104|pdb|3VAH|B Chain B, Structure Of U2af65 Variant With Bru3c4 Dna
gi|449802105|pdb|3VAI|A Chain A, Structure Of U2af65 Variant With Bru3c5 Dna
gi|449802106|pdb|3VAI|B Chain B, Structure Of U2af65 Variant With Bru3c5 Dna
gi|449802107|pdb|3VAJ|A Chain A, Structure Of U2af65 Variant With Bru5c6 Dna
gi|449802108|pdb|3VAJ|B Chain B, Structure Of U2af65 Variant With Bru5c6 Dna
gi|449802109|pdb|3VAK|A Chain A, Structure Of U2af65 Variant With Bru5 Dna
gi|449802110|pdb|3VAK|B Chain B, Structure Of U2af65 Variant With Bru5 Dna
gi|449802113|pdb|3VAL|A Chain A, Structure Of U2af65 Variant With Bru5c1 Dna
gi|449802114|pdb|3VAL|B Chain B, Structure Of U2af65 Variant With Bru5c1 Dna
gi|449802115|pdb|3VAL|D Chain D, Structure Of U2af65 Variant With Bru5c1 Dna
gi|449802116|pdb|3VAL|I Chain I, Structure Of U2af65 Variant With Bru5c1 Dna
gi|449802117|pdb|3VAM|A Chain A, Structure Of U2af65 Variant With Bru5c2 Dna
gi|449802118|pdb|3VAM|B Chain B, Structure Of U2af65 Variant With Bru5c2 Dna
Length = 174
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/199 (45%), Positives = 121/199 (60%), Gaps = 30/199 (15%)
Query: 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVE 233
ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN +K FAF+E R+V+
Sbjct: 6 ARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVD 64
Query: 234 EASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEG 293
E + AMA DGIIF+G ++++RRP DY QP P G
Sbjct: 65 ETTQAMAFDGIIFQGQSLKIRRPHDY-----------QPLP------------------G 95
Query: 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 353
++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY FC Y D VTD A
Sbjct: 96 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 155
Query: 354 AALNGLKMGDKTLTVRRAT 372
A LNG+++GDK L V+RA+
Sbjct: 156 AGLNGMQLGDKKLLVQRAS 174
>gi|389745686|gb|EIM86867.1| hypothetical protein STEHIDRAFT_57258 [Stereum hirsutum FP-91666
SS1]
Length = 417
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 136/230 (59%), Gaps = 19/230 (8%)
Query: 156 GAFPLMPVQV------MTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP 209
G P MPVQ + +R +RR+Y+G + P EQ + FF+ M + + P
Sbjct: 39 GLPPPMPVQTFGMGMGVNPNLSRQSRRLYIGSITPDITEQNLTDFFNSKMIEMNIGTGAP 98
Query: 210 GDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGP 269
G V+ V N+EK +AFVE R+ E+A+ AMA DGIIF +++RRP DY G
Sbjct: 99 GPPVLAVQCNYEKNYAFVEFRSAEDATAAMAFDGIIFVNGPLKIRRPKDYG-------GM 151
Query: 270 GQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD 329
P+P L++ G+ S + + P ++FVGGLP Y E Q+ ELL+SFG L F+LV++
Sbjct: 152 EMPAPPLHVP--GVVSTNV--PDSPHKIFVGGLPSYLNEEQVMELLKSFGDLKAFNLVRE 207
Query: 330 RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT--ASSGQ 377
G SKG+ F Y DP VTD+A +L+G+++GD+ L V+RA+ A +GQ
Sbjct: 208 NGNGPSKGFAFFEYVDPEVTDVAIQSLSGMELGDRYLVVQRASVGAKAGQ 257
>gi|339243511|ref|XP_003377681.1| splicing factor U2AFsubunit [Trichinella spiralis]
gi|316973494|gb|EFV57074.1| splicing factor U2AFsubunit [Trichinella spiralis]
Length = 402
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/267 (37%), Positives = 146/267 (54%), Gaps = 30/267 (11%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEK 222
V V+ T +RR+YVG +P E+A+ FF+Q M + G + G+ ++ IN +K
Sbjct: 76 VPVVGPSVTCQSRRLYVGNIPFGCTEEAMMDFFNQQMH-LCGLAQALGNPILACQINLDK 134
Query: 223 KFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVG 282
FAF+E R++ E + AMA DGI ++G ++++RRP DY QP P N G
Sbjct: 135 NFAFIEFRSIAETTAAMAFDGINYQGQSLKIRRPRDY-----------QPLPGQNDTLAG 183
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
L S + A+ P ++F+GGLP Y +E Q+KELL SFG L F+L+KD T SKGY F
Sbjct: 184 LVSSVV--ADSPYKLFIGGLPNYLSEEQVKELLISFGQLKAFNLIKDPATQISKGYAFAE 241
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQT 402
Y D +TD A A LNG+++GDK L V+ A S+ A+ A +A+Q
Sbjct: 242 YSDSTLTDQAIAGLNGMQLGDKKLVVQLA------------SVGAKNNMFSAAAPVAIQV 289
Query: 403 SGMNTLGGGMSLFGETLAKVLCLTEMM 429
GMN + + ++LCL M+
Sbjct: 290 PGMNVVNPAAT----PATEILCLMNMV 312
>gi|391337926|ref|XP_003743315.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like [Metaseiulus
occidentalis]
Length = 430
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 127/214 (59%), Gaps = 10/214 (4%)
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF 224
V+ TR ARR+YVG +P EQ + +F+ M A A G+ V+ IN +K F
Sbjct: 103 VIGSTITRQARRLYVGNIPFGCTEQEMIDYFNVQMHACAFAQAQ-GNPVLACQINMDKNF 161
Query: 225 AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLA 284
AF+E R+++E S AM+ DGI F+G ++++RRP DY P + G P G+
Sbjct: 162 AFLEFRSIDETSAAMSFDGINFKGQSLKIRRPHDYQPMPGMSESQGSVIP-------GVV 214
Query: 285 SGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQ 344
S + + P +VF+GGLP Y E Q++ELL SFG L F+LVKD TG SKGY FC Y
Sbjct: 215 STVV--QDSPHKVFIGGLPNYLNEDQVRELLMSFGQLKAFNLVKDTATGLSKGYAFCEYA 272
Query: 345 DPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
+ +TD A A LNG+++GDK L V+RA+ + S
Sbjct: 273 EVTITDDAIAGLNGMQLGDKKLIVQRASVGAKNS 306
>gi|430813569|emb|CCJ29085.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 545
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 142/260 (54%), Gaps = 32/260 (12%)
Query: 129 VPG--QLPGVPSAVPEMAQNMLPFGATQL-----GAFPLMPVQVMTQQATRHARRVYVGG 181
VPG LPG P Q+M+ GA + Q + +R +RR++VG
Sbjct: 182 VPGLFPLPGAPR------QSMMDLSKLSTVHKGPGAMNIPNPQALQPLQSRQSRRIHVGN 235
Query: 182 LPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMAL 241
+P +E+ + FF+ M+ + ++G + V++ +NHEK +AF+E R E+A+ A+
Sbjct: 236 IPQPIDEEHLVNFFNDTMSCLNVTTSG-DNPVISAQVNHEKGYAFLEFRQPEDATVAIGF 294
Query: 242 DGIIFEGVAVRVRRPTDY----NPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRV 297
DGI + ++++RRP DY PT + PG S N + P+++
Sbjct: 295 DGISYMNNSLKIRRPMDYIVPQMPTDDGSYVPGVISTNF--------------TDTPNKI 340
Query: 298 FVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN 357
+GGLP Y + Q+ ELL+SFG L F+L+KD T SKG+ FC Y DP VTDIAC LN
Sbjct: 341 HIGGLPTYLDDEQVIELLKSFGELKAFNLIKDAATNESKGFAFCEYVDPDVTDIACEGLN 400
Query: 358 GLKMGDKTLTVRRATASSGQ 377
G+++GDK L V+RA+ + Q
Sbjct: 401 GMELGDKILVVKRASIGTKQ 420
>gi|340373805|ref|XP_003385430.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like [Amphimedon
queenslandica]
Length = 529
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/266 (39%), Positives = 141/266 (53%), Gaps = 34/266 (12%)
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQ------VMTAIGGNSAGPGDAVVNVYINHEK 222
Q TR ARR+Y+G +P E+ + FF++ + +A PG V+ V IN +K
Sbjct: 198 QLTRQARRLYIGNIPFGIAEEVMVNFFNEKMLEAKLCSA-------PGIPVLAVQINMDK 250
Query: 223 KFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVG 282
FAF+E R+VEE +NAMA DGI+ +G ++++RRP DY P + P G
Sbjct: 251 NFAFIEFRSVEETTNAMAFDGIVLQGQSLKIRRPKDYAPIPGVDIMPKH--------VPG 302
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
+ S + +GP +VF GGLP Y ++ Q+KELL SFG L F+LVKD T SKGY F
Sbjct: 303 VISTVV--PDGPHKVFCGGLPTYLSDDQVKELLSSFGDLKAFNLVKDSGTSFSKGYCFFE 360
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQT 402
Y D VTD A LNG+ +GDK L V+R AS G E+ I I MA+
Sbjct: 361 YLDTDVTDGAIQGLNGMALGDKKLVVQR--ASVGAKVMEEYDI------STDITSMAMPI 412
Query: 403 SGMNTLGGGMSLFGETLAKVLCLTEM 428
S G M +T VLCL M
Sbjct: 413 S---IPGLQMPSTAQTATTVLCLMNM 435
>gi|170054347|ref|XP_001863087.1| splicing factor u2af large subunit [Culex quinquefasciatus]
gi|167874693|gb|EDS38076.1| splicing factor u2af large subunit [Culex quinquefasciatus]
Length = 438
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 129/221 (58%), Gaps = 18/221 (8%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P V V+ TR ARR+YVG +P E+ + FF+Q M + G + G+ V+ I
Sbjct: 101 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQMH-LSGLAQAAGNPVLACQI 159
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
N +K FAF+E R+++E + AMA DGI F+G ++++RRP DY QP P +
Sbjct: 160 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDY-----------QPMPGMTD 208
Query: 279 AAVGLASGAIGGA------EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
+AV G + P ++F+GGLP Y E Q+KELL SFG L F+LVKD T
Sbjct: 209 SAVAPVQEKFSGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLLSFGQLKAFNLVKDAAT 268
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
G SKGY F Y + ++TD A A LNG+++GDK L V+RA+
Sbjct: 269 GLSKGYAFAEYVEYSITDQAIAGLNGMQLGDKKLIVQRASV 309
>gi|198432988|ref|XP_002130386.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein auxiliary
factor (U2AF) 2 isoform 1 [Ciona intestinalis]
Length = 482
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 109/269 (40%), Positives = 152/269 (56%), Gaps = 30/269 (11%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEK 222
V V Q TR ARR+YVG +P E A+ FF+ M I G + PG ++ V IN +K
Sbjct: 150 VPVAGSQMTRQARRLYVGNIPFGVTEDAMMDFFNNQMQ-IAGLAQAPGQPILAVQINLDK 208
Query: 223 KFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVG 282
FAF+E R+V+E + A+A DGI F ++++RRP+DY P L +L QP+ +L G
Sbjct: 209 NFAFLEFRSVDETTQALAFDGINFMNQSLKIRRPSDYKP-LPGSLE--QPAIHLP----G 261
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
+ S + ++ ++F+GGLP Y + Q+KELL SFG L F+LVKD T SKGY F
Sbjct: 262 VISTVVQDSQ--HKMFIGGLPNYLNDDQVKELLTSFGPLRAFNLVKDSATALSKGYAFAE 319
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQK-MALQ 401
+ D ++TD A A LNG+++GDK L V+RA SI A+ H AI + LQ
Sbjct: 320 FADYSLTDQAIAGLNGMQLGDKKLIVQRA------------SIGAKNNPHGAIMAPVTLQ 367
Query: 402 TSGM-NTLGGGMSLFGETLAKVLCLTEMM 429
GM + G G + VLCL M+
Sbjct: 368 IPGMAHATGAGPA------TTVLCLMNMV 390
>gi|170088030|ref|XP_001875238.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650438|gb|EDR14679.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 370
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 131/229 (57%), Gaps = 23/229 (10%)
Query: 156 GAFPLMPVQVM------TQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP 209
G P MPVQ +R +RR+Y+G + P NEQ +A FF+ M + + GP
Sbjct: 4 GLPPPMPVQSFGMGIGGNPNLSRQSRRLYIGSITPEVNEQNLADFFNSKMIEMSIGTGGP 63
Query: 210 GDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGP 269
G+ V+ V N+EK +AFVE R+ E+A+ AMA DGIIF +++RRP DY
Sbjct: 64 GNPVLAVQCNYEKNYAFVEFRSAEDATAAMAFDGIIFINGPLKIRRPKDYG--------- 114
Query: 270 GQPSPNLNLAAVGLASGAIGGAEGPD---RVFVGGLPYYFTETQIKELLESFGTLHGFDL 326
+ +A+ G+ + PD ++FVGGLP Y E Q+ ELL+SFG L F+L
Sbjct: 115 -----GMEIASPGVHVPGVVSTNVPDSINKIFVGGLPTYLNEEQVMELLKSFGDLKAFNL 169
Query: 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
V++ G SKG+ F Y D VTD+A +LNG+++GD+ L V+RA+ +
Sbjct: 170 VRENGNGPSKGFAFFEYVDVGVTDVAIQSLNGMELGDRYLVVQRASVGA 218
>gi|426196755|gb|EKV46683.1| hypothetical protein AGABI2DRAFT_206147 [Agaricus bisporus var.
bisporus H97]
Length = 558
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 157/289 (54%), Gaps = 29/289 (10%)
Query: 97 KSLSPSRSPSKSKRR---SGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGAT 153
+S +P PS S+R+ SG+D+ P +A+ + G+ +P + +P +
Sbjct: 120 RSPTPENCPSLSQRKRKASGWDVHAPGYEQY--SAMQAKQTGL-FNLPGANRTQIPPILS 176
Query: 154 QLGAFPLMPVQVM------TQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSA 207
G P MPVQ +R +RR+Y+G + NEQ +A FF+ M + +
Sbjct: 177 IPGLPPPMPVQSFGMGIGGNPNLSRQSRRLYIGSITQEVNEQNLADFFNAKMAEMNIGTG 236
Query: 208 GPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAAL 267
G+ V+ V N+EK +AFVE R+ E+A+ AMA DGIIF +++RRP DY +
Sbjct: 237 ITGNPVLAVQCNYEKNYAFVEFRSAEDATAAMAFDGIIFINGPLKIRRPKDYGGDTIVSP 296
Query: 268 G---PGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324
G PG S N+ + ++VFVGGLP Y E Q+ ELL+SFG L F
Sbjct: 297 GVHVPGVVSTNV--------------PDSINKVFVGGLPTYLNEEQVMELLKSFGELKAF 342
Query: 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
+LV++ TG SKG+ F Y D AVTD+A +LNG+++GD+ L V+RA+
Sbjct: 343 NLVRENGTGTSKGFAFFEYVDQAVTDVAIQSLNGMELGDRYLVVQRASV 391
>gi|347968827|ref|XP_311994.4| AGAP002908-PA [Anopheles gambiae str. PEST]
gi|333467820|gb|EAA08228.4| AGAP002908-PA [Anopheles gambiae str. PEST]
Length = 446
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 106/278 (38%), Positives = 150/278 (53%), Gaps = 37/278 (13%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P V V+ TR ARR+YVG +P E+ + FF+Q M + G + G+ V+ I
Sbjct: 109 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQMH-LSGLAQAAGNPVLACQI 167
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
N +K FAF+E R+++E + AMA D I F+G ++++RRP DY P PG +
Sbjct: 168 NLDKNFAFLEFRSIDETTQAMAFDSINFKGQSLKIRRPHDYQPM------PGM----TDS 217
Query: 279 AAVGLA---SGAIGGA--EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG 333
AAV + SG I + P ++F+GGLP Y E Q+KELL SFG L F+LVKD TG
Sbjct: 218 AAVNVPEKFSGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLLSFGQLKAFNLVKDAATG 277
Query: 334 NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHI 393
KGY F Y + VTD A A LNG+++GDK L V+RA+ +K +++A Q +
Sbjct: 278 LGKGYAFAEYVEYTVTDQAIAGLNGMQLGDKKLIVQRASVG---AKNSNAAVVAPVQIQV 334
Query: 394 AIQKMALQTSGMNTLGGGMSLFGET--LAKVLCLTEMM 429
G+SL G + +VLCL M+
Sbjct: 335 P----------------GLSLVGSSGPPTEVLCLLNMV 356
>gi|390596686|gb|EIN06087.1| hypothetical protein PUNSTDRAFT_145447 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 602
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 123/208 (59%), Gaps = 17/208 (8%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
+R +RR+Y+G + P EQ +A FF+ M + + GPG+ V+ V N+EK +AFVE R
Sbjct: 240 SRQSRRLYIGSITPEITEQNLADFFNSKMIEMSIGTGGPGNPVLAVQCNYEKNYAFVEFR 299
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
+ E+A+ AMA DGIIF +++RRP DY G P P GL +
Sbjct: 300 SAEDATAAMAFDGIIFLNGPLKIRRPKDY----------GGPDP----MGAGLHVPGVVS 345
Query: 291 AEGPD---RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
PD +VFVGGLP Y E Q+ ELL SFG L F+LV++ G SKG+ F Y D +
Sbjct: 346 TNVPDSINKVFVGGLPAYLNEEQVMELLTSFGELKAFNLVRENGNGPSKGFAFFEYVDES 405
Query: 348 VTDIACAALNGLKMGDKTLTVRRATASS 375
VTD+A ALNG+++GD+ L V+RA+ +
Sbjct: 406 VTDVAIQALNGMELGDRYLVVQRASVGA 433
>gi|157132061|ref|XP_001662443.1| splicing factor u2af large subunit [Aedes aegypti]
gi|108881728|gb|EAT45953.1| AAEL002818-PA [Aedes aegypti]
Length = 418
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 131/220 (59%), Gaps = 16/220 (7%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P V V+ TR ARR+YVG +P E+ + FF+Q M + G + G+ V+ I
Sbjct: 81 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM-HLSGLAQAAGNPVLACQI 139
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
N +K FAF+E R+++E + AMA DGI F+G ++++RRP DY P PG +
Sbjct: 140 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYQPM------PGM----TDS 189
Query: 279 AAVGLA---SGAIGGA--EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG 333
AAV + SG I + P ++F+GGLP Y E Q+KELL SFG L F+LVKD TG
Sbjct: 190 AAVSVPEKFSGVISTVVPDSPHKIFIGGLPNYLNEDQVKELLLSFGQLKAFNLVKDAATG 249
Query: 334 NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
SKGY F Y + +TD A A LNG+++GDK L V+RA+
Sbjct: 250 LSKGYAFAEYVEYTITDQAIAGLNGMQLGDKKLIVQRASV 289
>gi|392589921|gb|EIW79251.1| hypothetical protein CONPUDRAFT_83522 [Coniophora puteana
RWD-64-598 SS2]
Length = 411
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/229 (40%), Positives = 135/229 (58%), Gaps = 23/229 (10%)
Query: 156 GAFPLMPVQVM------TQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP 209
G P +PVQ +R +RR+Y+G + P NEQ +A FF+ M + + GP
Sbjct: 27 GLPPPIPVQTFGMGIGSNPNLSRQSRRLYIGSITPDVNEQNLADFFNGKMIEMSIGTGGP 86
Query: 210 GDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGP 269
G+ V+ V N+EK +AFVE R+ E+A+ AMA DGIIF +++RRP DY G
Sbjct: 87 GNPVLAVQCNYEKNYAFVEFRSAEDATAAMAFDGIIFINGPLKIRRPKDYG-------GD 139
Query: 270 GQPSPNLNLAAVGLASGAIGGAEGPD---RVFVGGLPYYFTETQIKELLESFGTLHGFDL 326
+PN ++ G+ S + PD ++FVGGLP Y E Q+ ELL+SFG L F+L
Sbjct: 140 AIMAPNFHVP--GVVSTNV-----PDSIHKIFVGGLPPYLNEEQVMELLKSFGELKAFNL 192
Query: 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
V++ G SKG+ F Y D +VTD+A +LNG+++GD+ L V+RA+ +
Sbjct: 193 VRENGNGPSKGFAFFEYVDSSVTDVAIQSLNGMELGDRYLVVQRASVGA 241
>gi|336368252|gb|EGN96595.1| hypothetical protein SERLA73DRAFT_93106 [Serpula lacrymans var.
lacrymans S7.3]
Length = 396
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/224 (40%), Positives = 134/224 (59%), Gaps = 17/224 (7%)
Query: 156 GAFPLMPVQVM------TQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP 209
G P MPVQ +R +RR+Y+G + P NEQ +A FF+ M + + P
Sbjct: 27 GLPPPMPVQTFGMGIGSNPNLSRQSRRLYIGSITPDVNEQNLADFFNSKMIEMSIGTGAP 86
Query: 210 GDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGP 269
G+ V+ V N+EK +AFVE R+ E+A+ AMA DGIIF +++RRP DY G
Sbjct: 87 GNPVLAVQCNYEKNYAFVEFRSAEDATAAMAFDGIIFINGPLKIRRPKDYG-------GV 139
Query: 270 GQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD 329
+P++++ G+ S + + ++VFVGGLP Y E Q+ ELL+SFG L F+LV++
Sbjct: 140 DMSAPSVHVP--GVVSTNV--PDSINKVFVGGLPTYLNEEQVMELLKSFGELKAFNLVRE 195
Query: 330 RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
G SKG+ F Y D +VTD+A +LNG+++GD+ L V+RA+
Sbjct: 196 NGNGPSKGFAFFEYVDISVTDVAIQSLNGMELGDRYLVVQRASV 239
>gi|355727237|gb|AES09128.1| U2 small nuclear RNA auxiliary factor 2 [Mustela putorius furo]
Length = 301
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 142/256 (55%), Gaps = 27/256 (10%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
RSP K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 65 RSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT- 122
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+
Sbjct: 123 -------PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVL 174
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S
Sbjct: 175 AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SE 227
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
N ++ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG
Sbjct: 228 NPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 285
Query: 335 SKGYGFCVYQDPAVTD 350
SKGY FC Y D VTD
Sbjct: 286 SKGYAFCEYVDINVTD 301
>gi|195489053|ref|XP_002092574.1| GE11595 [Drosophila yakuba]
gi|194178675|gb|EDW92286.1| GE11595 [Drosophila yakuba]
Length = 437
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 152/271 (56%), Gaps = 34/271 (12%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIG--GNSAGPGDAVVNVYINHEKKFAFVE 228
TR ARR+YVG +P E+ + FF+Q + A+G G G AV+ N EK FAF+E
Sbjct: 98 TRQARRLYVGNIPFGVTEEEMMEFFNQQLMALGLEGAQYLDGKAVLTCQTNLEKNFAFLE 157
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALG----------PGQPSPNLNL 278
R+++EA+ A+ DGIIF G +++RRP DY P + + P + N +
Sbjct: 158 FRSMDEATQALNFDGIIFRGQILKIRRPHDYQPVPSIRVSNMESYRSFRLPATTTTNPPI 217
Query: 279 AAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
+ + ++S + P++++VGGLP + QIK+LL+SFG L G +LVKD +T SKG+
Sbjct: 218 STIAVSSIV---PDSPNKIYVGGLPTCLDQDQIKDLLQSFGELKGLNLVKDINTSLSKGF 274
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKM 398
F Y DP+VTD A A L+G+++GD+ L V+R+ + + +++Q+
Sbjct: 275 AFFEYIDPSVTDHAIAGLHGMQLGDRRLVVQRS--------------IPGGKNGLSVQQP 320
Query: 399 ALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+Q G++TL L + ++LCL M+
Sbjct: 321 IVQVPGISTL-----LDPGSPTEILCLLNMV 346
>gi|308477324|ref|XP_003100876.1| CRE-UAF-1 protein [Caenorhabditis remanei]
gi|308264450|gb|EFP08403.1| CRE-UAF-1 protein [Caenorhabditis remanei]
Length = 496
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/246 (40%), Positives = 143/246 (58%), Gaps = 15/246 (6%)
Query: 135 GVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATF 194
G + P +NM GA G+ V V+ T +RR+YVG +P NE+A+ F
Sbjct: 145 GFENITPMEYKNMQASGAVPRGSVQ-SAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDF 203
Query: 195 FSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVR 254
F+Q M + G + PG+ ++ IN +K FAF+E R+++E + MA DGI F G ++VR
Sbjct: 204 FNQQM-HLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVR 262
Query: 255 RPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKEL 314
RP DY P+ Q + ++N A + ++S + + P+++F+GGLP Y TE Q+KEL
Sbjct: 263 RPRDYQPS--------QNTFDMN-ARMPVSSIVV---DSPNKIFIGGLPNYLTEDQVKEL 310
Query: 315 LESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374
L SFG L F L D GNSKGY F Y DP +TD A A LNG+++GDK L V+ A A+
Sbjct: 311 LCSFGPLKAFSLNMDS-QGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACAN 369
Query: 375 SGQSKT 380
+ T
Sbjct: 370 QTRHNT 375
>gi|195124159|ref|XP_002006561.1| GI21125 [Drosophila mojavensis]
gi|193911629|gb|EDW10496.1| GI21125 [Drosophila mojavensis]
Length = 427
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 129/206 (62%), Gaps = 4/206 (1%)
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEM 229
TR ARR+YVG +P ++ + FF++ + + G + G+AV+ N +K FAF+E
Sbjct: 96 VTRQARRLYVGNIPFSTTDEDMMAFFNEQINRLNGTNGVDGNAVLTCQTNLDKNFAFLEF 155
Query: 230 RTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIG 289
R+++EA+ A+ DGI++ G +++RRP DY+P A++ + + +A + S I
Sbjct: 156 RSMDEATQAINFDGILYRGQTLKIRRPHDYHPM--ASVSSSEAADAAKGSATHVNSVPIS 213
Query: 290 GA--EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
+ P +++VGGLP E Q+KELL +FG L GF+LVK+ TG SKG+ FC Y DP
Sbjct: 214 PMVPDSPHKIYVGGLPTCLNEEQVKELLVTFGKLRGFNLVKEAVTGQSKGFAFCEYVDPC 273
Query: 348 VTDIACAALNGLKMGDKTLTVRRATA 373
+T+ A A LNG+++GD+ L V+R+ A
Sbjct: 274 ITEQAIAGLNGMQLGDRKLIVQRSIA 299
>gi|395529346|ref|XP_003766777.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Sarcophilus
harrisii]
Length = 462
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/251 (41%), Positives = 141/251 (56%), Gaps = 17/251 (6%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFP 159
RSP K K R +D+ PP + P Q + +A A +LP A
Sbjct: 126 RSPRHEKKKKIRKYWDVPPPGFEHI----TPMQYKAMQAAGQIPATALLPTMTPDGLAVT 181
Query: 160 LMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN 219
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN
Sbjct: 182 PAPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQIN 240
Query: 220 HEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLA 279
+K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++
Sbjct: 241 QDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVY 293
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY
Sbjct: 294 VPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYA 351
Query: 340 FCVYQDPAVTD 350
FC Y D VTD
Sbjct: 352 FCEYVDINVTD 362
>gi|330803435|ref|XP_003289712.1| hypothetical protein DICPUDRAFT_56283 [Dictyostelium purpureum]
gi|325080222|gb|EGC33787.1| hypothetical protein DICPUDRAFT_56283 [Dictyostelium purpureum]
Length = 501
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 117/205 (57%), Gaps = 20/205 (9%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRT 231
+ +RR+YVG +PP + + FF+ + A N PG VV IN K FAF+E RT
Sbjct: 158 KQSRRIYVGNIPPGITDSELIEFFNAAVLAANLN-VKPGPPVVFCQINAPKCFAFIEFRT 216
Query: 232 VEEASNAMALDGIIFEGVAVRVRRPTDY----NPTLAAALGPGQPSPNLNLAAVGLASGA 287
EEA+NAM DGI + +++RRP DY +PT +AL P+
Sbjct: 217 PEEATNAMRFDGITLKNYTLKIRRPKDYQQSNDPTNTSALPTIVPT-------------- 262
Query: 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
+ ++FVGGLP E Q+K LL ++G L F+LVKD +TG SKGY FC Y DP
Sbjct: 263 -NVPDSEHKIFVGGLPSNLNEEQVKTLLSAYGKLKAFNLVKDTNTGISKGYAFCEYLDPD 321
Query: 348 VTDIACAALNGLKMGDKTLTVRRAT 372
VTD ACA+LNG+ + DK L V+RA+
Sbjct: 322 VTDQACASLNGISLADKNLIVQRAS 346
>gi|336381013|gb|EGO22165.1| hypothetical protein SERLADRAFT_371639 [Serpula lacrymans var.
lacrymans S7.9]
Length = 381
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 132/219 (60%), Gaps = 17/219 (7%)
Query: 161 MPVQVM------TQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
MPVQ +R +RR+Y+G + P NEQ +A FF+ M + + PG+ V+
Sbjct: 1 MPVQTFGMGIGSNPNLSRQSRRLYIGSITPDVNEQNLADFFNSKMIEMSIGTGAPGNPVL 60
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
V N+EK +AFVE R+ E+A+ AMA DGIIF +++RRP DY G +P
Sbjct: 61 AVQCNYEKNYAFVEFRSAEDATAAMAFDGIIFINGPLKIRRPKDYG-------GVDMSAP 113
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
++++ G+ S + + ++VFVGGLP Y E Q+ ELL+SFG L F+LV++ G
Sbjct: 114 SVHVP--GVVSTNV--PDSINKVFVGGLPTYLNEEQVMELLKSFGELKAFNLVRENGNGP 169
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
SKG+ F Y D +VTD+A +LNG+++GD+ L V+RA+
Sbjct: 170 SKGFAFFEYVDISVTDVAIQSLNGMELGDRYLVVQRASV 208
>gi|195380577|ref|XP_002049047.1| GJ20975 [Drosophila virilis]
gi|194143844|gb|EDW60240.1| GJ20975 [Drosophila virilis]
Length = 428
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 129/208 (62%), Gaps = 7/208 (3%)
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEM 229
TR ARR+YVG +P ++ + FF++ + + G G+AV+ N +K FAF+E
Sbjct: 96 VTRQARRLYVGNIPFSTTDEDMMAFFNEQIHRLNGTQGHDGNAVLTCQTNLDKNFAFLEF 155
Query: 230 RTVEEASNAMALDGIIFEGVAVRVRRPTDYNP----TLAAALGPGQPSPNLNLAAVGLAS 285
R+++EA+ A+ DGI + G +++RRP DY+P T A + + + ++ + + ++
Sbjct: 156 RSMDEATQAITFDGISYRGQTLKIRRPHDYHPVASITTAEIVEIAKGATQIHASNLPISP 215
Query: 286 GAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQD 345
+ P ++++GGLP E Q+KELL +FG L GF+LVKD TG SKG+ FC Y D
Sbjct: 216 VV---PDSPHKIYIGGLPTCLNEEQVKELLVTFGQLRGFNLVKDTITGQSKGFAFCEYLD 272
Query: 346 PAVTDIACAALNGLKMGDKTLTVRRATA 373
P++T+ A A LNG+++GD+ L V+R+ A
Sbjct: 273 PSITEQAIAGLNGMQLGDRKLVVQRSIA 300
>gi|198432986|ref|XP_002130494.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein auxiliary
factor (U2AF) 2 isoform 2 [Ciona intestinalis]
Length = 472
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 131/210 (62%), Gaps = 10/210 (4%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEK 222
V V Q TR ARR+YVG +P E A+ FF+ M I G + PG ++ V IN +K
Sbjct: 146 VPVAGSQMTRQARRLYVGNIPFGVTEDAMMDFFNNQMQ-IAGLAQAPGQPILAVQINLDK 204
Query: 223 KFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVG 282
FAF+E R+V+E + A+A DGI F ++++RRP+DY P L +L QP+ +L G
Sbjct: 205 NFAFLEFRSVDETTQALAFDGINFMNQSLKIRRPSDYKP-LPGSLE--QPAIHLP----G 257
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
+ S + ++ ++F+GGLP Y + Q+KELL SFG L F+LVKD T SKGY F
Sbjct: 258 VISTVVQDSQ--HKMFIGGLPNYLNDDQVKELLTSFGPLRAFNLVKDSATALSKGYAFAE 315
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D ++TD A A LNG+++GDK L V+RA+
Sbjct: 316 FADYSLTDQAIAGLNGMQLGDKKLIVQRAS 345
>gi|66808005|ref|XP_637725.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|60466159|gb|EAL64222.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 671
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 121/204 (59%), Gaps = 10/204 (4%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRT 231
+ +RR+YVG +PP ++ + FF+ + A N+ PG VV IN K FAF+E R+
Sbjct: 265 KQSRRIYVGNIPPGISDSELMEFFNAAVLAANLNTK-PGPPVVFCQINAPKCFAFIEFRS 323
Query: 232 VEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGA 291
EEA+NAM DGI + +++RRP DY T G P++ V
Sbjct: 324 PEEATNAMRFDGISLKNFTLKIRRPKDYQSTSDNTGGNASLLPSIVPTNV---------P 374
Query: 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDI 351
+ ++++VGGLP +E Q+K LL ++G L F+LVKD +TG SKG+ FC YQD VTD+
Sbjct: 375 DSENKIYVGGLPSNLSEEQVKSLLSAYGKLKAFNLVKDTNTGVSKGFAFCEYQDSEVTDV 434
Query: 352 ACAALNGLKMGDKTLTVRRATASS 375
AC+ LNG+ + DKTL V+RA+ S
Sbjct: 435 ACSKLNGIPLADKTLVVQRASIGS 458
>gi|297706019|ref|XP_002829852.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Pongo abelii]
Length = 352
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 143/242 (59%), Gaps = 23/242 (9%)
Query: 188 EQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFE 247
++A+ FF+ M +GG + PG+ V+ V IN +K FAF+E R+V+E + AMA DGIIF+
Sbjct: 74 KEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQ 132
Query: 248 GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFT 307
G ++++RRP DY P PG S N ++ G+ S + + ++F+GGLP Y
Sbjct: 133 GQSLKIRRPHDYQPL------PGM-SENPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLN 183
Query: 308 ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367
+ Q+KELL SFG L F+LVKD TG SKGY FC Y D VTD A A LNG+++GDK L
Sbjct: 184 DDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL 243
Query: 368 VRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTE 427
V+RA+ + + ++ Q + +Q L +S + +GG + +VLCL
Sbjct: 244 VQRASVGA-----KNATLSTINQTPVTLQVPGLMSSQVQ-MGGHPT-------EVLCLMN 290
Query: 428 MM 429
M+
Sbjct: 291 MV 292
>gi|387193280|gb|AFJ68695.1| splicing factor U2AF 65 kDa subunit [Nannochloropsis gaditana
CCMP526]
Length = 424
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 134/221 (60%), Gaps = 15/221 (6%)
Query: 167 TQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAF 226
TQQ+TRHARRVYVGG A++ + FF+Q++ P VV + +N +K FAF
Sbjct: 82 TQQSTRHARRVYVGGNFGDASDFEVLAFFNQIINE-SLERPSPAGPVVAIQVNRQKHFAF 140
Query: 227 VEMRTVEEASNA-MALDGIIFEGVAVRVRRPTDYNPTL------------AAALGPGQPS 273
+E+ +V ++ M LDG+ F G ++V+RPTDY+P L A Q S
Sbjct: 141 LELNSVPLTTSVIMQLDGVPFRGNPLKVKRPTDYHPELLPLDTPPPPTLKVANFRALQAS 200
Query: 274 PNLNLAAVGL-ASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
L +A+ GL A GA + P ++FVGGLPY+ T+ Q++ELL +FG L GFDL KD T
Sbjct: 201 GALPMASTGLTAPGANSVPDSPYKIFVGGLPYHVTDDQVRELLSAFGPLRGFDLKKDPAT 260
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
G SKGYGFC Y D AV D+A L+G+ +G KTLTV+ A A
Sbjct: 261 GMSKGYGFCEYIDHAVGDVAIQGLHGMDLGGKTLTVKYALA 301
>gi|1710361|gb|AAB38280.1| splicing factor U2AF65 [Caenorhabditis briggsae]
Length = 488
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/246 (39%), Positives = 141/246 (57%), Gaps = 15/246 (6%)
Query: 135 GVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATF 194
G + P +NM GA G+ V V+ T +RR+YVG +P NE+A+ F
Sbjct: 136 GFENITPMEYKNMQASGAVPRGSVQ-SAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDF 194
Query: 195 FSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVR 254
F+Q M + + PG+ ++ IN +K FAF+E R+++E + MA DGI F G ++VR
Sbjct: 195 FNQQM-HLCNLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVR 253
Query: 255 RPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKEL 314
RP DY P+ Q + ++N A + ++S + A +++F+GGLP Y TE Q+KEL
Sbjct: 254 RPRDYQPS--------QNTFDMN-ARMPVSSIVVDSA---NKIFIGGLPNYLTEDQVKEL 301
Query: 315 LESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374
L SFG L F L D GNSKGY F Y DP +TD A A LNG+++GDK L V+ A A+
Sbjct: 302 LCSFGPLKAFSLNVDS-QGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACAN 360
Query: 375 SGQSKT 380
+ T
Sbjct: 361 QTRHNT 366
>gi|268575804|ref|XP_002642882.1| C. briggsae CBR-UAF-1 protein [Caenorhabditis briggsae]
gi|60415989|sp|P90727.2|U2AF2_CAEBR RecName: Full=Splicing factor U2AF 65 kDa subunit; AltName: Full=U2
auxiliary factor 65 kDa subunit; Short=U2AF65; AltName:
Full=U2 snRNP auxiliary factor large subunit
Length = 488
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/246 (39%), Positives = 141/246 (57%), Gaps = 15/246 (6%)
Query: 135 GVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATF 194
G + P +NM GA G+ V V+ T +RR+YVG +P NE+A+ F
Sbjct: 136 GFENITPMEYKNMQASGAVPRGSVQ-SAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDF 194
Query: 195 FSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVR 254
F+Q M + + PG+ ++ IN +K FAF+E R+++E + MA DGI F G ++VR
Sbjct: 195 FNQQM-HLCNLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVR 253
Query: 255 RPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKEL 314
RP DY P+ Q + ++N A + ++S + A +++F+GGLP Y TE Q+KEL
Sbjct: 254 RPRDYQPS--------QNTFDMN-ARMPVSSIVVDSA---NKIFIGGLPNYLTEDQVKEL 301
Query: 315 LESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374
L SFG L F L D GNSKGY F Y DP +TD A A LNG+++GDK L V+ A A+
Sbjct: 302 LCSFGPLKAFSLNVDS-QGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACAN 360
Query: 375 SGQSKT 380
+ T
Sbjct: 361 QTRHNT 366
>gi|410054709|ref|XP_003954504.1| PREDICTED: LOW QUALITY PROTEIN: splicing factor U2AF 65 kDa subunit
[Pan troglodytes]
Length = 394
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 142/241 (58%), Gaps = 23/241 (9%)
Query: 189 QAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG 248
+A+ FF+ M +GG + PG+ V+ V IN +K FAF+E R+V+E + AMA DGIIF+G
Sbjct: 86 EAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQG 144
Query: 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTE 308
++++RRP DY P PG S N ++ G+ S + + ++F+GGLP Y +
Sbjct: 145 QSLKIRRPHDYQPL------PGM-SENPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLND 195
Query: 309 TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
Q+KELL SFG L F+LVKD TG SKGY FC Y D VTD A A LNG+++GDK L V
Sbjct: 196 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 255
Query: 369 RRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEM 428
+RA+ + + ++ Q + +Q L +S + +GG + +VLCL M
Sbjct: 256 QRASVGA-----KNATLSTINQTPVTLQVPGLMSSQVQ-MGGHPT-------EVLCLMNM 302
Query: 429 M 429
+
Sbjct: 303 V 303
>gi|341891946|gb|EGT47881.1| hypothetical protein CAEBREN_25972 [Caenorhabditis brenneri]
Length = 491
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 132/218 (60%), Gaps = 14/218 (6%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEK 222
V V+ T +RR+YVG +P NE+A+ FF+Q M + G + PG+ ++ IN +K
Sbjct: 167 VPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDFFNQQM-HLCGLAQAPGNPILLCQINLDK 225
Query: 223 KFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVG 282
FAF+E R+++E + MA DGI F G ++VRRP DY P+ Q + ++N + +
Sbjct: 226 NFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQPS--------QNTFDMN-SRMP 276
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
++S + A +++F+GGLP Y TE Q+KELL SFG L F L D GNSKGY F
Sbjct: 277 VSSIVVDSA---NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAE 332
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKT 380
Y DP +TD A A LNG+++GDK L V+ A A+ + T
Sbjct: 333 YLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQTRHNT 370
>gi|71996475|ref|NP_001022967.1| Protein UAF-1, isoform a [Caenorhabditis elegans]
gi|6226906|sp|P90978.2|U2AF2_CAEEL RecName: Full=Splicing factor U2AF 65 kDa subunit; AltName: Full=U2
auxiliary factor 65 kDa subunit; Short=U2AF65; AltName:
Full=U2 snRNP auxiliary factor large subunit
gi|3334906|gb|AAC26982.1| splicing factor U2AF65 [Caenorhabditis elegans]
gi|351018334|emb|CCD62278.1| Protein UAF-1, isoform a [Caenorhabditis elegans]
Length = 496
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 132/218 (60%), Gaps = 14/218 (6%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEK 222
V V+ T +RR+YVG +P NE+A+ FF+Q M + G + PG+ ++ IN +K
Sbjct: 172 VPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDFFNQQM-HLCGLAQAPGNPILLCQINLDK 230
Query: 223 KFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVG 282
FAF+E R+++E + MA DGI F G ++VRRP DY P+ Q + ++N + +
Sbjct: 231 NFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQPS--------QNTFDMN-SRMP 281
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
+++ + A +++F+GGLP Y TE Q+KELL SFG L F L D GNSKGY F
Sbjct: 282 VSTIVVDSA---NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDS-QGNSKGYAFAE 337
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKT 380
Y DP +TD A A LNG+++GDK L V+ A A+ + T
Sbjct: 338 YLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQQRHNT 375
>gi|71996485|ref|NP_001022969.1| Protein UAF-1, isoform c [Caenorhabditis elegans]
gi|351018336|emb|CCD62280.1| Protein UAF-1, isoform c [Caenorhabditis elegans]
Length = 474
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 132/218 (60%), Gaps = 14/218 (6%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEK 222
V V+ T +RR+YVG +P NE+A+ FF+Q M + G + PG+ ++ IN +K
Sbjct: 150 VPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDFFNQQM-HLCGLAQAPGNPILLCQINLDK 208
Query: 223 KFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVG 282
FAF+E R+++E + MA DGI F G ++VRRP DY P+ Q + ++N + +
Sbjct: 209 NFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQPS--------QNTFDMN-SRMP 259
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
+++ + A +++F+GGLP Y TE Q+KELL SFG L F L D GNSKGY F
Sbjct: 260 VSTIVVDSA---NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDS-QGNSKGYAFAE 315
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKT 380
Y DP +TD A A LNG+++GDK L V+ A A+ + T
Sbjct: 316 YLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQQRHNT 353
>gi|71996490|ref|NP_001022970.1| Protein UAF-1, isoform d [Caenorhabditis elegans]
gi|351018337|emb|CCD62281.1| Protein UAF-1, isoform d [Caenorhabditis elegans]
Length = 471
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 132/218 (60%), Gaps = 14/218 (6%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEK 222
V V+ T +RR+YVG +P NE+A+ FF+Q M + G + PG+ ++ IN +K
Sbjct: 147 VPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDFFNQQM-HLCGLAQAPGNPILLCQINLDK 205
Query: 223 KFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVG 282
FAF+E R+++E + MA DGI F G ++VRRP DY P+ Q + ++N + +
Sbjct: 206 NFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQPS--------QNTFDMN-SRMP 256
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
+++ + A +++F+GGLP Y TE Q+KELL SFG L F L D GNSKGY F
Sbjct: 257 VSTIVVDSA---NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAE 312
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKT 380
Y DP +TD A A LNG+++GDK L V+ A A+ + T
Sbjct: 313 YLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQQRHNT 350
>gi|324503285|gb|ADY41429.1| Splicing factor U2AF 65 kDa subunit [Ascaris suum]
Length = 522
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 127/213 (59%), Gaps = 14/213 (6%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEK 222
V V+ T +RR+YVG +P +E A+ FF+Q M + G + PG+ V+ +N +K
Sbjct: 198 VPVVGPSVTCQSRRLYVGNIPFGCSEDAMLDFFNQQMH-LCGLAQAPGNPVLACQMNLDK 256
Query: 223 KFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVG 282
FAF+E R+++E + MA DGI F G +++RRP DY P ++ + G N+
Sbjct: 257 NFAFIEFRSIDETTAGMAFDGINFMGQQLKIRRPRDYQP-MSTSYDMG------NMMVSN 309
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
+ A+ P ++F+GGLP Y Q+KELL SFG L F+LV D TG SKGY F
Sbjct: 310 IV------ADSPYKIFIGGLPSYLNAEQVKELLSSFGQLKAFNLVTDVSTGVSKGYAFAE 363
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
Y DP++TD A A LNG+++GDK L V+ + A++
Sbjct: 364 YLDPSLTDQAIAGLNGMQLGDKNLVVQLSCANA 396
>gi|198456623|ref|XP_001360392.2| GA16338 [Drosophila pseudoobscura pseudoobscura]
gi|198135682|gb|EAL24967.2| GA16338 [Drosophila pseudoobscura pseudoobscura]
Length = 491
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 143/282 (50%), Gaps = 36/282 (12%)
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP----GDAVVNVYINHEKKFA 225
TR ARR+YVG +P E I FF+Q +G N G G AV++ N +K FA
Sbjct: 121 VTRQARRLYVGNIPFGVTEDDIMAFFNQQFLLLGDNCGGQLCLDGKAVLSCQANLDKNFA 180
Query: 226 FVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPT-----------LAAALGPGQPSP 274
F+E R+++EA+ A DGI F G +++RRP DY+P + A+G S
Sbjct: 181 FIEFRSMQEATQATTFDGISFRGQVLKIRRPHDYHPVGSVGAAAGAGSIPDAVGGCASSA 240
Query: 275 NLNLAAVGLASGAIGGA-------EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLV 327
+ +G++G + P ++++GGLP ETQIKELL SFG L GF+LV
Sbjct: 241 AAKSRSSSAETGSLGSQAISNLVPDSPHKIYIGGLPTCLNETQIKELLLSFGQLRGFNLV 300
Query: 328 KDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILA 387
KD T SKGY F Y DP +T+ A LNG+++GD+ L V+R+ S +
Sbjct: 301 KDPSTTLSKGYAFFEYVDPLLTEQVIANLNGMQLGDRRLIVQRSIPSGRYA--------- 351
Query: 388 QAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
Q I IQ L + + G++ +VLCL M+
Sbjct: 352 -GNQQIPIQVPGLVATSLTGSTAGLN----NATQVLCLLNMV 388
>gi|402590758|gb|EJW84688.1| hypothetical protein WUBG_04401 [Wuchereria bancrofti]
Length = 477
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 128/213 (60%), Gaps = 14/213 (6%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEK 222
V V+ T +RR+YVG +P +E A+ FF+Q M + G + PG+ V+ +N +K
Sbjct: 153 VPVVGPSVTCQSRRLYVGNIPFGCSEDAMLDFFNQQM-HLCGLAQAPGNPVLACQMNLDK 211
Query: 223 KFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVG 282
FAF+E R+++E + MA DGI F G +++RRP DY P S + +L +
Sbjct: 212 NFAFIEFRSIDETTAGMAFDGINFMGQQLKIRRPRDYQPM----------STSYDLGNM- 260
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
+ S + + P ++F+GGLP Y Q+KELL SFG L F+LV ++ TG SKGY F
Sbjct: 261 MVSNIV--PDSPHKIFIGGLPSYLNAEQVKELLSSFGQLKAFNLVTEQSTGVSKGYAFAE 318
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
Y DP++TD A A LNG+++GDK L V+ + A++
Sbjct: 319 YLDPSLTDQAIAGLNGMQLGDKNLVVQLSCANA 351
>gi|13938661|gb|AAH07487.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Mus
musculus]
Length = 306
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 139/236 (58%), Gaps = 23/236 (9%)
Query: 194 FFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRV 253
FF+ M +GG + PG+ V+ V IN +K FAF+E R+V+E + AMA DGIIF+G ++++
Sbjct: 3 FFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKI 61
Query: 254 RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKE 313
RRP DY P PG S N ++ G+ S + + ++F+GGLP Y + Q+KE
Sbjct: 62 RRPHDYQPL------PGM-SENPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKE 112
Query: 314 LLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
LL SFG L F+LVKD TG SKGY FC Y D VTD A A LNG+++GDK L V+RA+
Sbjct: 113 LLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 172
Query: 374 SSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ + ++ Q + +Q L +S + +GG + +VLCL M+
Sbjct: 173 GA-----KNATLSTINQTPVTLQVPGLMSSQVQ-MGGHPT-------EVLCLMNMV 215
>gi|76779874|gb|AAI06135.1| U2af2 protein [Mus musculus]
Length = 307
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 139/236 (58%), Gaps = 23/236 (9%)
Query: 194 FFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRV 253
FF+ M +GG + PG+ V+ V IN +K FAF+E R+V+E + AMA DGIIF+G ++++
Sbjct: 4 FFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKI 62
Query: 254 RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKE 313
RRP DY P PG S N ++ G+ S + + ++F+GGLP Y + Q+KE
Sbjct: 63 RRPHDYQPL------PGM-SENPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKE 113
Query: 314 LLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
LL SFG L F+LVKD TG SKGY FC Y D VTD A A LNG+++GDK L V+RA+
Sbjct: 114 LLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 173
Query: 374 SSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ + ++ Q + +Q L +S + +GG + +VLCL M+
Sbjct: 174 GA-----KNATLSTINQTPVTLQVPGLMSSQVQ-MGGHPT-------EVLCLMNMV 216
>gi|393909510|gb|EJD75480.1| hypothetical protein LOAG_17389 [Loa loa]
Length = 502
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 128/213 (60%), Gaps = 14/213 (6%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEK 222
V V+ T +RR+YVG +P +E A+ FF+Q M + G + PG+ V+ +N +K
Sbjct: 178 VPVVGPSVTCQSRRLYVGNIPFGCSEDAMLDFFNQQM-HLCGLAQAPGNPVLACQMNLDK 236
Query: 223 KFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVG 282
FAF+E R+++E + MA DGI F G +++RRP DY P S + +L +
Sbjct: 237 NFAFIEFRSIDETTAGMAFDGINFMGQQLKIRRPRDYQPM----------STSYDLGNM- 285
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
+ S + + P ++F+GGLP Y Q+KELL SFG L F+LV ++ TG SKGY F
Sbjct: 286 MVSNIV--PDSPHKIFIGGLPSYLNAEQVKELLSSFGQLKAFNLVTEQSTGVSKGYAFAE 343
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
Y DP++TD A A LNG+++GDK L V+ + A++
Sbjct: 344 YLDPSLTDQAIAGLNGMQLGDKNLVVQLSCANA 376
>gi|170575889|ref|XP_001893425.1| U2 auxiliary factor 65 kDa subunit [Brugia malayi]
gi|158600599|gb|EDP37742.1| U2 auxiliary factor 65 kDa subunit, putative [Brugia malayi]
Length = 502
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 128/213 (60%), Gaps = 14/213 (6%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEK 222
V V+ T +RR+YVG +P +E A+ FF+Q M + G + PG+ V+ +N +K
Sbjct: 178 VPVVGPSVTCQSRRLYVGNIPFGCSEDAMLDFFNQQM-HLCGLAQAPGNPVLACQMNLDK 236
Query: 223 KFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVG 282
FAF+E R+++E + MA DGI F G +++RRP DY P S + +L +
Sbjct: 237 NFAFIEFRSIDETTAGMAFDGINFMGQQLKIRRPRDYQPM----------STSYDLGNM- 285
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
+ S + + P ++F+GGLP Y Q+KELL SFG L F+LV ++ TG SKGY F
Sbjct: 286 MVSNIV--PDSPHKIFIGGLPSYLNAEQVKELLSSFGQLKAFNLVTEQSTGVSKGYAFAE 343
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
Y DP++TD A A LNG+++GDK L V+ + A++
Sbjct: 344 YLDPSLTDQAIAGLNGMQLGDKNLVVQLSCANA 376
>gi|409081516|gb|EKM81875.1| hypothetical protein AGABI1DRAFT_70425 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 375
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 128/219 (58%), Gaps = 17/219 (7%)
Query: 161 MPVQVM------TQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
MPVQ +R +RR+Y+G + NEQ +A FF+ M + + G+ V+
Sbjct: 1 MPVQSFGMGIGGNPNLSRQSRRLYIGSITQEVNEQNLADFFNAKMAEMNIGTGITGNPVL 60
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
V N+EK +AFVE R+ E+A+ AMA DGIIF +++RRP DY + PG P
Sbjct: 61 AVQCNYEKNYAFVEFRSAEDATAAMAFDGIIFINGPLKIRRPKDYGGD--TIVSPGVHVP 118
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
G+ S + + ++VFVGGLP Y E Q+ ELL+SFG L F+LV++ TG
Sbjct: 119 -------GVVSTNV--PDSINKVFVGGLPTYLNEEQVMELLKSFGELKAFNLVRENGTGT 169
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
SKG+ F Y D AVTD+A +LNG+++GD+ L V+RA+
Sbjct: 170 SKGFAFFEYVDQAVTDVAIQSLNGMELGDRYLVVQRASV 208
>gi|312078073|ref|XP_003141580.1| U2af splicing factor protein 1 [Loa loa]
Length = 460
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 128/213 (60%), Gaps = 14/213 (6%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEK 222
V V+ T +RR+YVG +P +E A+ FF+Q M + G + PG+ V+ +N +K
Sbjct: 178 VPVVGPSVTCQSRRLYVGNIPFGCSEDAMLDFFNQQMH-LCGLAQAPGNPVLACQMNLDK 236
Query: 223 KFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVG 282
FAF+E R+++E + MA DGI F G +++RRP DY P S + +L +
Sbjct: 237 NFAFIEFRSIDETTAGMAFDGINFMGQQLKIRRPRDYQPM----------STSYDLGNMM 286
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
+++ + P ++F+GGLP Y Q+KELL SFG L F+LV ++ TG SKGY F
Sbjct: 287 VSNIV---PDSPHKIFIGGLPSYLNAEQVKELLSSFGQLKAFNLVTEQSTGVSKGYAFAE 343
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
Y DP++TD A A LNG+++GDK L V+ + A++
Sbjct: 344 YLDPSLTDQAIAGLNGMQLGDKNLVVQLSCANA 376
>gi|299745153|ref|XP_001831503.2| rRNA primary transcript binding protein [Coprinopsis cinerea
okayama7#130]
gi|298406457|gb|EAU90350.2| rRNA primary transcript binding protein [Coprinopsis cinerea
okayama7#130]
Length = 550
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 127/205 (61%), Gaps = 10/205 (4%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
+R +RR+Y+G + P NEQ +A FF++ M + + G+ V+ V N+EK +AFVE R
Sbjct: 192 SRQSRRLYIGSITPDVNEQNLAEFFNKKMAEMNIGTGSTGNPVLAVQCNYEKNYAFVEFR 251
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
+ ++A+ AMA DGIIF +++RRP DY + SP +++ G S +
Sbjct: 252 SADDATAAMAFDGIIFINGPLKIRRPKDYGGEVVTG------SPGIHVP--GAVSTNV-- 301
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
+ ++VFVGGLP Y E Q+ ELL+SFG L F+LV++ G SKG+ F Y D +VTD
Sbjct: 302 PDSINKVFVGGLPTYLNEEQVMELLKSFGELKAFNLVRENGNGPSKGFAFFEYVDSSVTD 361
Query: 351 IACAALNGLKMGDKTLTVRRATASS 375
+A +LNG+++GD+ L V+RA+ +
Sbjct: 362 VAIQSLNGMELGDRYLVVQRASVGA 386
>gi|440792998|gb|ELR14199.1| U2 snRNP auxilliary factor, large subunit, splicing factor
subfamily protein [Acanthamoeba castellanii str. Neff]
Length = 462
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 120/211 (56%), Gaps = 28/211 (13%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
R ARR+YVG +PP G S VV+ +N +K F+F+E
Sbjct: 171 NRQARRLYVGSIPP-------------------GVSDPDHRPVVSSQLNPDKSFSFIEFS 211
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDY-NPTLAAALGPGQPSPNLNLAAVGLASGAIG 289
T++EA+ MALDGI G+ ++VRRP DY +P A A G + G+ S +
Sbjct: 212 TIDEATAGMALDGITMNGMTLKVRRPKDYVSPPTAQAPASG------GIHIPGIVSTNV- 264
Query: 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
+ P+++F+GGLP Y E Q+KELL +FG L F+LVKD TGNSKGY F Y D +VT
Sbjct: 265 -PDSPNKIFIGGLPSYLNEAQVKELLTAFGPLKAFNLVKDTATGNSKGYAFFEYLDASVT 323
Query: 350 DIACAALNGLKMGDKTLTVRRATASSGQSKT 380
D AC LNG+K+GDKTL V+RA + Q T
Sbjct: 324 DRACQGLNGMKLGDKTLLVQRANIGAKQDGT 354
>gi|397633851|gb|EJK71162.1| hypothetical protein THAOC_07424, partial [Thalassiosira oceanica]
Length = 449
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 132/222 (59%), Gaps = 21/222 (9%)
Query: 166 MTQQATRHARRVYVGGLPPLANEQAIATFF------SQVMTAIGGNSAG------PGDAV 213
M TRHARR+Y+G +P ++ E I +FF S +M N A D +
Sbjct: 230 MNPNQTRHARRLYIGNIPDIS-ETEIHSFFRKTIEKSLIMNRDDKNYAQLQEEYIANDPI 288
Query: 214 VNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA-VRVRRPTDYNPTLAAALGPGQP 272
V+VYIN E++FAF+E RT++ + ++LDGI EG V+V+RP DYN +LA G
Sbjct: 289 VSVYINRERRFAFIEFRTMDITTACLSLDGIDVEGRGKVKVKRPNDYNASLAPQTSNGV- 347
Query: 273 SPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
+L+ A +GL S + +GP+++F+GGLPY+ TE+Q+ ELL +FG++ F LVK +
Sbjct: 348 --SLDTAKLGLVSSTV--PDGPNKIFIGGLPYHLTESQVLELLGAFGSVRAFHLVKSEPS 403
Query: 333 G-NSKGYGFCVYQDPAVTDIACAALNGLKM-GDKTLTVRRAT 372
SKGY F Y DP +T +AC LNG+ + G K L+ R A
Sbjct: 404 ATTSKGYCFVEYADPNITQVACMGLNGMDLGGGKQLSCRMAV 445
>gi|195149862|ref|XP_002015874.1| GL11290 [Drosophila persimilis]
gi|194109721|gb|EDW31764.1| GL11290 [Drosophila persimilis]
Length = 487
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/287 (35%), Positives = 146/287 (50%), Gaps = 46/287 (16%)
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP----GDAVVNVYINHEKKFA 225
TR ARR+YVG +P E I FF+Q +G + G G AV++ N +K FA
Sbjct: 117 VTRQARRLYVGNIPFGVTEDDIMAFFNQQFLLLGDDCGGQLCLDGKAVLSCQANLDKNFA 176
Query: 226 FVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPT-----------LAAALGPGQPSP 274
F+E R+++EA+ A DGI F G +++RRP DY+P + A+G S
Sbjct: 177 FIEFRSMQEATQATTFDGISFRGQVLKIRRPHDYHPVGSVGAAAGAGSIPDAVGGCASSA 236
Query: 275 NLNLAAVGLASGAIGGA-------EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLV 327
+ +G++G + P ++++GGLP ETQIKELL SFG L GF+LV
Sbjct: 237 AAKSRSSSADTGSLGSQAISNLVPDSPHKIYIGGLPTCLNETQIKELLLSFGQLRGFNLV 296
Query: 328 KDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILA 387
KD T SKGY F Y DP +T+ A LNG+++GD+ L V+R+ S
Sbjct: 297 KDPSTTLSKGYAFFEYVDPLLTEQVIANLNGMQLGDRRLIVQRSIPSG------------ 344
Query: 388 QAQQHIAIQKMALQTSGMNTLGGGMSLFGET-----LAKVLCLTEMM 429
++ IQ++ +Q G+ SL G T +VLCL M+
Sbjct: 345 ---RYAGIQQIPIQVPGLV----ATSLTGSTAGLNNATQVLCLLNMV 384
>gi|393236224|gb|EJD43774.1| hypothetical protein AURDEDRAFT_137718 [Auricularia delicata
TFB-10046 SS5]
Length = 389
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 126/208 (60%), Gaps = 17/208 (8%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIG-GNSAGPGDAVVNVYINHEKKFAFVEMR 230
R +RR+Y+G + P E+ + FF+Q M + G GD V+ V +N+EK +AFVE R
Sbjct: 26 RQSRRLYIGSITPEITEENLTKFFNQKMREMNLGQQNASGDPVLAVQVNYEKNYAFVEFR 85
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
+ ++A+ AMA DGIIF+ +R+RRP DY +G +P+ + G+ S +
Sbjct: 86 SADDATAAMAFDGIIFQSGPLRIRRPKDY-------MGNEYSAPSA-MHVPGVVSTNV-- 135
Query: 291 AEGPD---RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
PD ++FVGGLP Y E Q+ ELL+SFG L F+LV++ + G SKGY F Y D
Sbjct: 136 ---PDSLHKIFVGGLPTYLNEEQVMELLKSFGELKAFNLVRENNNGPSKGYAFFEYVDEE 192
Query: 348 VTDIACAALNGLKMGDKTLTVRRATASS 375
VT++A LNG+++GD+ L V+RA+ S
Sbjct: 193 VTEVAIQGLNGMELGDRVLAVQRASVGS 220
>gi|18446992|gb|AAL68087.1| AT16577p [Drosophila melanogaster]
Length = 449
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 129/213 (60%), Gaps = 13/213 (6%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP----GDAVVNVYINHEKKFAF 226
TR ARR+YVG +P ++ + FF+ + A+G + G+AV+ N EK FAF
Sbjct: 107 TRQARRLYVGNIPFGVTDEEMMQFFNHQIMALGFEAKSSHYMDGNAVLTCQTNLEKNFAF 166
Query: 227 VEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP-----SPNLNLA-- 279
+E R+++EAS A+ DG++F G +++RRP DY P + ++ + P +N+A
Sbjct: 167 LEFRSIDEASQALNFDGMVFRGQTLKIRRPHDYQPVPSISVSAMESYRSFRVPAINVAQQ 226
Query: 280 -AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
AV L I + P++++VGGLP + Q+KELL+SFG L G +LV D +T +KG+
Sbjct: 227 PAVTLPVTTIV-PDSPNKIYVGGLPTCLNQDQVKELLQSFGELKGLNLVMDTNTNLNKGF 285
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
F Y DP+VTD A A L+G+ +GD+ L V+R+
Sbjct: 286 AFFEYCDPSVTDHAIAGLHGMLLGDRRLVVQRS 318
>gi|24659166|ref|NP_611769.2| large subunit 2 [Drosophila melanogaster]
gi|7291545|gb|AAF46969.1| large subunit 2 [Drosophila melanogaster]
gi|201066057|gb|ACH92438.1| FI08027p [Drosophila melanogaster]
Length = 449
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 129/213 (60%), Gaps = 13/213 (6%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP----GDAVVNVYINHEKKFAF 226
TR ARR+YVG +P ++ + FF+ + A+G + G+AV+ N EK FAF
Sbjct: 107 TRQARRLYVGNIPFGVTDEEMMQFFNHQIMALGFEAKSSHYMDGNAVLTCQTNLEKNFAF 166
Query: 227 VEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP-----SPNLNLA-- 279
+E R+++EAS A+ DG++F G +++RRP DY P + ++ + P +N+A
Sbjct: 167 LEFRSIDEASQALNFDGMVFRGQTLKIRRPHDYQPVPSISVSAMESYRSFRVPAINVAQQ 226
Query: 280 -AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
AV L I + P++++VGGLP + Q+KELL+SFG L G +LV D +T +KG+
Sbjct: 227 PAVTLPVTTIV-PDSPNKIYVGGLPTCLNQDQVKELLQSFGELKGLNLVMDTNTNLNKGF 285
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
F Y DP+VTD A A L+G+ +GD+ L V+R+
Sbjct: 286 AFFEYCDPSVTDHAIAGLHGMLLGDRRLVVQRS 318
>gi|443924699|gb|ELU43686.1| rRNA primary transcript binding protein [Rhizoctonia solani AG-1
IA]
Length = 678
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 127/209 (60%), Gaps = 21/209 (10%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRT 231
R +RR+YVG + ANE + FF++ M + + G GD V+ V INHEK +AFVE R+
Sbjct: 233 RQSRRLYVGNITYEANENNLQEFFNRKMVEMKIGTGGGGDPVIGVQINHEKSYAFVEFRS 292
Query: 232 VEEASNAMALDGIIFEGVAVRVRRPTDYNPT-LAAALG---PGQPSPNLNLAAVGLASGA 287
E+A+ AMA DGI+F+ +++RRP DY + L+A +G PG S N+
Sbjct: 293 AEDATAAMAFDGIMFQSGPLKIRRPKDYTGSDLSAPMGVHVPGVVSTNV----------- 341
Query: 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC-VYQDP 346
+ +++FVGGLP Y E Q+ ELL+SFG L F+LV R+ GN C VY DP
Sbjct: 342 ---PDSINKIFVGGLPTYLDENQVMELLKSFGELKAFNLV--RENGNGAFRRDCQVYVDP 396
Query: 347 AVTDIACAALNGLKMGDKTLTVRRATASS 375
+VTDIA LNG+++GD+ L V+RA+ +
Sbjct: 397 SVTDIAIQGLNGMELGDRFLVVQRASVGA 425
>gi|401402634|ref|XP_003881297.1| rna recognition motif (RRM)-containing protein,related [Neospora
caninum Liverpool]
gi|325115709|emb|CBZ51264.1| rna recognition motif (RRM)-containing protein,related [Neospora
caninum Liverpool]
Length = 555
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 124/214 (57%), Gaps = 23/214 (10%)
Query: 180 GGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM 239
G LP + + +F++++ ++ PGD +V+VY+N ++FAF+E R++EEA+ +
Sbjct: 16 GNLPVPVTQGEVQQYFNELLNSLLPQKV-PGDTIVHVYVNPARRFAFLEHRSIEEANFTL 74
Query: 240 ALDGIIFEGVAVRVRRPTDYNPTLA--------AALG---------PGQPSPNLNLAAVG 282
LDG+ + A+ +RRP DYNPTLA A LG P Q + A
Sbjct: 75 GLDGVSWRNCALSLRRPQDYNPTLADQQYREERARLGSMTGFAVPPPSQAATPAAPAESS 134
Query: 283 LASGAIGGA-----EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
L +GA+G + P ++F+GGLP+ TE K+LLE+FG L +VKD+ G+ KG
Sbjct: 135 LIAGALGIVSTTVPDSPHKIFIGGLPHSITEQGCKQLLEAFGQLRALHVVKDQQRGDCKG 194
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
+ FC Y DP VTD+A A LN +++ D+ L VRRA
Sbjct: 195 FAFCEYLDPNVTDVAVAGLNNMRIADRVLQVRRA 228
>gi|195429288|ref|XP_002062695.1| GK19586 [Drosophila willistoni]
gi|194158780|gb|EDW73681.1| GK19586 [Drosophila willistoni]
Length = 466
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 122/219 (55%), Gaps = 25/219 (11%)
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEM 229
TR ARR+YVG +P ++ + FF+ + ++G G V+ N EK FAF+E
Sbjct: 129 VTRQARRLYVGNIPFGVTDKEMMNFFNVQLQSLGLKQFHDGTPVLTCQTNLEKNFAFLEF 188
Query: 230 RTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIG 289
R++ E + A+A DG+ F G +++RRP DY+P + + +L VGL+ +
Sbjct: 189 RSMGETTQAIAFDGVNFRGQTLKIRRPHDYHPVTSLS----------SLETVGLSDTIVT 238
Query: 290 GA---------------EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
A + P ++++G LP E QIKELL SFG L GF+LVKD +TG
Sbjct: 239 SAHTPVPMKDLVSTLVPDSPQKIYIGSLPPCLDEAQIKELLLSFGRLRGFNLVKDANTGM 298
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
SKGY F Y D AVT+ A A LNG+ +GD+ L V+R+ A
Sbjct: 299 SKGYAFFEYVDSAVTEQAIAGLNGMLLGDRRLVVQRSIA 337
>gi|194884971|ref|XP_001976363.1| GG20057 [Drosophila erecta]
gi|190659550|gb|EDV56763.1| GG20057 [Drosophila erecta]
Length = 440
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 147/271 (54%), Gaps = 34/271 (12%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIG--GNSAGPGDAVVNVYINHEKKFAFVE 228
TR ARR+YVG +P E+ + FF+Q + A+G G G AV+ N EK FAF+E
Sbjct: 101 TRQARRLYVGNIPFGVTEEEMMKFFNQQLLALGLAGAQYMDGKAVLTCQTNLEKNFAFLE 160
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALG----------PGQPSPNLNL 278
R+++EA+ A+ DGI+F G +++RRP DY P + + P + L
Sbjct: 161 FRSMDEATQALNFDGILFRGQVLKIRRPHDYQPVPSIRVSAMESYRSFRLPDNTVTHPPL 220
Query: 279 AAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
A + L+S + P+++FVGGLP + QI++LL+SFG L +LVKD +T SKG+
Sbjct: 221 ATIPLSSIV---PDSPNKIFVGGLPTCLGQDQIRDLLQSFGELKRLNLVKDTNTCLSKGF 277
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKM 398
F Y DP VTD A A L+G+++G++ L V+R+ + + Q+ +
Sbjct: 278 AFFEYFDPTVTDHAIAGLHGMQLGNRRLVVQRSIPGGKHAVSGQQPL------------- 324
Query: 399 ALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+Q G++TL L + +++CL M+
Sbjct: 325 -VQVPGISTL-----LDPGSPTEIICLLNMV 349
>gi|402223467|gb|EJU03531.1| hypothetical protein DACRYDRAFT_77158 [Dacryopinax sp. DJM-731 SS1]
Length = 392
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 122/213 (57%), Gaps = 19/213 (8%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRT 231
+ ARR+Y+G + P E+ + F + + +G G V ++HEK +A++E
Sbjct: 54 KQARRLYIGDITPDTTEENLTAFLKKTLPELGIKVEGEDVGFEEVRVSHEKNYAYIEFSN 113
Query: 232 VEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV--GLASGAIG 289
++A+ M LDG +F G +++RRP DY L+A +LA V G+ G +
Sbjct: 114 PDDATKTMELDGTVFLGQPLKIRRPHDY---LSAT----------DLAVVFGGIVPGVVS 160
Query: 290 GAEGPD---RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDP 346
PD ++FVGGLP Y E Q+ ELL++FG L F+LVKD TG SKG+ F Y DP
Sbjct: 161 -TNVPDSINKIFVGGLPTYLNEAQVMELLQTFGELRAFNLVKDGSTGVSKGFAFFEYMDP 219
Query: 347 AVTDIACAALNGLKMGDKTLTVRRATASSGQSK 379
VTD+AC LNG+++GD+ L V+RA+ + +K
Sbjct: 220 GVTDVACQGLNGMELGDRYLVVQRASIGANPTK 252
>gi|281207514|gb|EFA81697.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 682
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 117/210 (55%), Gaps = 13/210 (6%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEK 222
VQ + + +RR+YVG +PP E I FF+ + A + PG V+ I K
Sbjct: 287 VQSASAALAKQSRRLYVGNIPPNVTEAQIVEFFNAAIIAAALTTK-PGQPVLLCQITTGK 345
Query: 223 KFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVG 282
FAF+E R+ EEA+ M LDGI G ++++RRP DY G +P P G
Sbjct: 346 SFAFIEFRSSEEATLGMGLDGISLSGYSLKIRRPKDYQS------GSNEPMP------TG 393
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
L+ + + +++F+GGLP E QIK +L + G L F+LVKD TG SKG+ FC
Sbjct: 394 LSIVSTNVPDSENKIFLGGLPPTLNEEQIKSMLSAIGRLKAFNLVKDTKTGISKGFAFCE 453
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ DP TD ACA LNG K GDK+L V++A+
Sbjct: 454 FLDPENTDKACAELNGTKFGDKSLLVQKAS 483
>gi|328865493|gb|EGG13879.1| RapGAP/RanGAP domain-containing protein [Dictyostelium fasciculatum]
Length = 3032
Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats.
Identities = 80/213 (37%), Positives = 123/213 (57%), Gaps = 9/213 (4%)
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGN-SAGPGDAVVNVYINHEKKFAFV 227
Q + +RR+Y+G +PP + + FF+ +TA + S+ G V++ IN K FAF+
Sbjct: 2570 QQNKQSRRLYIGNIPPNITDNTLIDFFNTAITAANLHLSSKTGPVVLSCQINSAKNFAFL 2629
Query: 228 EMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGA 287
E R+ EEA+NAM LDGI ++++RRPTDY P + P P ++ + S
Sbjct: 2630 EFRSAEEATNAMGLDGISLFTFSLKIRRPTDYQPPANESSMPSAP------VSMSIVSTN 2683
Query: 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
+ +E +++F+GG+P E QIK +L +FG L F+LVKD TG+SKGY FC Y +
Sbjct: 2684 VPDSE--NKIFIGGIPTTLNEEQIKSMLLAFGRLKAFNLVKDPKTGSSKGYAFCEYYETE 2741
Query: 348 VTDIACAALNGLKMGDKTLTVRRATASSGQSKT 380
T+ LNG K G+K+L V+R++ + T
Sbjct: 2742 ETNDCINGLNGTKFGEKSLVVQRSSVGTKDPST 2774
>gi|321479007|gb|EFX89963.1| U2 small nuclear ribonucleoprotein auxiliary factor 2 isoform 1
[Daphnia pulex]
Length = 487
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 164/332 (49%), Gaps = 57/332 (17%)
Query: 134 PGVPSAVPEMA-QNMLPFGATQLGAFPLMPVQVMTQQA------------TRHARRVYVG 180
P + +P + +++ P + A +P +MT+ A TR ARR+YVG
Sbjct: 86 PSIYWDIPPIGFEHITPMQYKAMQAAGQIPANIMTEVAPQVQVPVVGNTITRQARRLYVG 145
Query: 181 GLP-----PLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEA 235
+P A E+ + FF+Q M + G S PG ++ IN +K FAF+E R+++E
Sbjct: 146 NIPFGVSDVRAAEEEMMDFFNQQM-HLSGLSQAPGHPILACQINLDKNFAFLEFRSIDET 204
Query: 236 SNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGA---- 291
S AMA DGI F+G +++RRP DY+PT G G G++SG I
Sbjct: 205 SQAMAFDGINFKGQTLKIRRPHDYHPTPGGGGGGGGGG-GGPETTPGMSSGGITEKRAGG 263
Query: 292 --------------EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
+ P ++F+GGLP Y E Q ELL SFG L F+LVKD TG SKG
Sbjct: 264 GGGGGGGTMSTIVPDTPHKLFIGGLPNYLNEEQ--ELLMSFGQLRAFNLVKDTATGLSKG 321
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQK 397
Y FC Y D VTD A + LNG+++GDK + ++RA+ + + A AQ + I
Sbjct: 322 YAFCEYADVTVTDQAISGLNGMQLGDKKIIIQRASVGAKNAA-------AYAQMPVQI-- 372
Query: 398 MALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
Q G N G G+ +VLCL M+
Sbjct: 373 ---QVPGFNLAAGP----GQP-TEVLCLLNMV 396
>gi|195585954|ref|XP_002082743.1| GD25073 [Drosophila simulans]
gi|194194752|gb|EDX08328.1| GD25073 [Drosophila simulans]
Length = 445
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 123/218 (56%), Gaps = 23/218 (10%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP----GDAVVNVYINHEKKFAF 226
TR ARR+YVG +P E+ + FF+ +TA+G + G AV+ N EK FAF
Sbjct: 103 TRQARRLYVGNIPFGVTEEEMMQFFNHRITALGYEAKSSHYMDGKAVLTCQTNLEKNFAF 162
Query: 227 VEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP-------------S 273
+E R+++EA+ A+ DG++F G +++RRP DY P + + +
Sbjct: 163 LEFRSIDEATQALNFDGMVFRGQTLKIRRPHDYQPVPSISFSAMENYRSFRVPDTTIANP 222
Query: 274 PNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG 333
PN+ + + + P++++VGGLP + Q+KELL+SFG L G +LV D +T
Sbjct: 223 PNVTIPVTTIV------PDSPNKIYVGGLPTCLNQDQVKELLQSFGELKGLNLVMDGNTS 276
Query: 334 NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
+KG+ F Y DP VTD A A L+G+ +GD+ L V+R+
Sbjct: 277 LNKGFAFFEYYDPLVTDHAIAGLHGMLLGDRRLVVQRS 314
>gi|297837403|ref|XP_002886583.1| hypothetical protein ARALYDRAFT_338287 [Arabidopsis lyrata subsp.
lyrata]
gi|297332424|gb|EFH62842.1| hypothetical protein ARALYDRAFT_338287 [Arabidopsis lyrata subsp.
lyrata]
Length = 233
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 109/155 (70%), Gaps = 16/155 (10%)
Query: 276 LNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNS 335
+ L+ G +G + EGPDR+FVGGLP+YFT+ QI+E+LE G L GF+L+KDR TG+S
Sbjct: 4 VELSTTGSTTGDL--VEGPDRIFVGGLPHYFTDAQIREILECLGPLRGFNLLKDRQTGDS 61
Query: 336 KGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESI-LAQAQQHIA 394
KGY FCVYQDP+VTDIACAALNG+K+GDKTL VRRA + Q K EQE + AQQ IA
Sbjct: 62 KGYAFCVYQDPSVTDIACAALNGIKIGDKTLAVRRAMQGTIQPKPEQEEVLQQIAQQQIA 121
Query: 395 IQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+Q++ L+ G+ T K++CL++++
Sbjct: 122 LQRLMLEPGGIPT-------------KIVCLSQLV 143
>gi|224003073|ref|XP_002291208.1| U2 snRNP auxillary splicing factor, U2AF subunit [Thalassiosira
pseudonana CCMP1335]
gi|220972984|gb|EED91315.1| U2 snRNP auxillary splicing factor, U2AF subunit, partial
[Thalassiosira pseudonana CCMP1335]
Length = 352
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 123/205 (60%), Gaps = 16/205 (7%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAI--GGNSAG---------PGDAVVNVYIN 219
TRHARR+YVG +P +++EQ F + ++I NS D +++VYIN
Sbjct: 1 TRHARRLYVGNIPDVSDEQLHHFFRDAIRSSIILDNNSEAHSSHKHQYVDNDPIISVYIN 60
Query: 220 HEKKFAFVEMRTVEEASNAMALDGIIFEGVA-VRVRRPTDYNPTLAAALGPGQPSPNLNL 278
E++FAF+E +T+E + MALDG+ G V+++RP DYNP +A L P L+
Sbjct: 61 RERRFAFLEFKTMEITTACMALDGLDVMGRGKVKIKRPNDYNPAVAPMLN-ASTMPVLDT 119
Query: 279 AAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK-DRDTGNSKG 337
+G+ S + +GP+++FVGGLPY+ ++Q+ ELL +FG + F+LVK D + SKG
Sbjct: 120 GKLGIISMTV--HDGPNKIFVGGLPYHLVDSQVLELLSAFGAVKAFNLVKNDPMSDTSKG 177
Query: 338 YGFCVYQDPAVTDIACAALNGLKMG 362
Y F Y DP VT IA LNG+ MG
Sbjct: 178 YCFVEYCDPNVTQIAAMGLNGMDMG 202
>gi|403331270|gb|EJY64574.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 565
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 117/212 (55%), Gaps = 5/212 (2%)
Query: 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTV 232
H+RR+YVGG+P ++ + F +Q + GG GD V+ N EK++ F+E+R+V
Sbjct: 188 HSRRLYVGGVPTSQSDVQVVQFLTQTLRKAGG-ILEEGDPVIKSQNNPEKRYTFLELRSV 246
Query: 233 EEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAE 292
EEAS + LDGI F +R+RRP DY+ P + AA+G+ S + E
Sbjct: 247 EEASTMIQLDGIKFMDSTLRIRRPEDYDKYPQIPPRRPIPQIDT--AALGIISTKV--EE 302
Query: 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIA 352
P ++FVGGLP F E QIK LL +G L F LVK + S+G+ FC Y D A
Sbjct: 303 TPLKIFVGGLPKEFNEEQIKNLLLRYGQLKSFHLVKHTNIDQSRGFAFCEYTDEKGVQNA 362
Query: 353 CAALNGLKMGDKTLTVRRATASSGQSKTEQES 384
LNGLK+G +++ VRR AS+ + Q S
Sbjct: 363 IQFLNGLKIGSRSINVRRTGASTSTVQQNQIS 394
>gi|58268792|ref|XP_571552.1| rRNA primary transcript binding protein [Cryptococcus neoformans
var. neoformans JEC21]
gi|57227787|gb|AAW44245.1| rRNA primary transcript binding protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 651
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 126/238 (52%), Gaps = 29/238 (12%)
Query: 137 PSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFS 196
P VP A +P GAFP R R+Y+GG+ EQ I FF+
Sbjct: 245 PGRVPPPAHLGIP-ATFVAGAFP-------PSNPVRQNNRLYIGGIKEDMQEQQIQDFFN 296
Query: 197 QVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRP 256
+M G + G D V IN+++ FAF+E+ T E+A+ A+ LDG++ +G ++RVRRP
Sbjct: 297 NLMKE-KGMADGKEDPVKQCQINNDRNFAFIELHTPEQATAALELDGVVLDGASLRVRRP 355
Query: 257 TDY---NPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKE 313
DY +P L G PS A+ P+++F+GG+P Y + Q+ E
Sbjct: 356 KDYAGIDPLLQTFNGVVAPS----------------VADSPNKLFIGGIPTYLNDEQVME 399
Query: 314 LLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
LL+SFG L F+LVK+ G SKG+ F Y DP VTD+A L+ +GD+ L V+RA
Sbjct: 400 LLKSFGELKSFNLVKE-SAGVSKGFAFAEYLDPEVTDMAIQGLHNFSLGDRNLVVQRA 456
>gi|134113282|ref|XP_774666.1| hypothetical protein CNBF3460 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257310|gb|EAL20019.1| hypothetical protein CNBF3460 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 652
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 126/238 (52%), Gaps = 29/238 (12%)
Query: 137 PSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFS 196
P VP A +P GAFP R R+Y+GG+ EQ I FF+
Sbjct: 246 PGRVPPPAHLGIP-ATFVAGAFP-------PSNPVRQNNRLYIGGIKEDMQEQQIQDFFN 297
Query: 197 QVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRP 256
+M G + G D V IN+++ FAF+E+ T E+A+ A+ LDG++ +G ++RVRRP
Sbjct: 298 NLMKE-KGMADGKEDPVKQCQINNDRNFAFIELHTPEQATAALELDGVVLDGASLRVRRP 356
Query: 257 TDY---NPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKE 313
DY +P L G PS A+ P+++F+GG+P Y + Q+ E
Sbjct: 357 KDYAGIDPLLQTFNGVVAPS----------------VADSPNKLFIGGIPTYLNDEQVME 400
Query: 314 LLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
LL+SFG L F+LVK+ G SKG+ F Y DP VTD+A L+ +GD+ L V+RA
Sbjct: 401 LLKSFGELKSFNLVKE-SAGVSKGFAFAEYLDPEVTDMAIQGLHNFSLGDRNLVVQRA 457
>gi|405121398|gb|AFR96167.1| rRNA primary transcript binding protein [Cryptococcus neoformans
var. grubii H99]
Length = 655
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 126/238 (52%), Gaps = 29/238 (12%)
Query: 137 PSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFS 196
P VP A +P GAFP R R+Y+GG+ EQ I FF+
Sbjct: 249 PGRVPPPAHLGIP-ATFVAGAFP-------PSNPVRQNNRLYIGGIKEDMQEQQIQDFFN 300
Query: 197 QVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRP 256
+M G + G D V IN+++ FAF+E+ T E+A+ A+ LDG++ +G ++RVRRP
Sbjct: 301 NLMKE-KGMADGKEDPVKQCQINNDRNFAFIELHTPEQATAALELDGVVLDGASLRVRRP 359
Query: 257 TDY---NPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKE 313
DY +P L G PS A+ P+++F+GG+P Y + Q+ E
Sbjct: 360 KDYAGIDPLLQTFNGVVAPS----------------VADSPNKLFIGGIPTYLNDEQVME 403
Query: 314 LLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
LL+SFG L F+LVK+ G SKG+ F Y DP VTD+A L+ +GD+ L V+RA
Sbjct: 404 LLKSFGELKSFNLVKES-AGVSKGFAFAEYLDPEVTDMAIQGLHNFALGDRNLVVQRA 460
>gi|388580158|gb|EIM20475.1| hypothetical protein WALSEDRAFT_55089 [Wallemia sebi CBS 633.66]
Length = 391
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 123/216 (56%), Gaps = 15/216 (6%)
Query: 157 AFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV 216
+F +P + R +RRV++G L P NE+ + F+ M+ I + PG+ VVNV
Sbjct: 15 SFSNLPPTLEDFNGARASRRVFIGDLKPNHNEENLTKLFNDKMSTIDQVAKIPGEPVVNV 74
Query: 217 YINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNL 276
+ H++ +A++E R +EA+ A+ DG IF+G ++++RP + L G
Sbjct: 75 TVKHDRGYAYIEFRNTDEAAYALQFDGTIFQGEGIQIKRPQEVLDELQRKQG-------- 126
Query: 277 NLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSK 336
SG + ++ ++FVG LP + + Q+ ELL SFG L F+LVK+ + SK
Sbjct: 127 -----HTVSGTVPDSD--QKIFVGSLPTFLNDEQVMELLGSFGELRSFNLVKEGTSDVSK 179
Query: 337 GYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
G+ FC Y DPA+TDIA LNG+++GD+ L V+R++
Sbjct: 180 GFAFCEYMDPALTDIAIQGLNGMEVGDRKLVVQRSS 215
>gi|195057468|ref|XP_001995263.1| GH23055 [Drosophila grimshawi]
gi|193899469|gb|EDV98335.1| GH23055 [Drosophila grimshawi]
Length = 453
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 130/228 (57%), Gaps = 23/228 (10%)
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEM 229
TR ARR+YVG +P + + FF+ + + G G AV+ N EK FAF+E+
Sbjct: 123 VTRQARRLYVGNIPFNTTDDEMRAFFNVQIQRMCGALENDGKAVLTCQTNLEKNFAFLEL 182
Query: 230 RTVEEASNAMALDGIIFEGVAVRVRRPTDYNP--TLAAALGPGQPSPNLNLAAVGLASGA 287
R+++E + A++ DGI + G ++++RRP DY+ T + +G A G SGA
Sbjct: 183 RSMDETTLAISFDGINYRGQSLKIRRPHDYHAGGTTGSFVG-----------ATGYVSGA 231
Query: 288 IGGA---------EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
+ + + P ++++GGLP + Q+KELL +FG L GF++VKD + G+ KGY
Sbjct: 232 VVQSNAAIATVVPDTPHKIYIGGLPTCLNDDQVKELLMTFGHLRGFNMVKD-ELGHGKGY 290
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESIL 386
FC Y D ++T+ A A LNG+++G++ L V+R+ A T Q +L
Sbjct: 291 AFCEYMDASITEQAIAGLNGMQLGERKLIVQRSLAGVRNLVTHQLPVL 338
>gi|321260434|ref|XP_003194937.1| splicing factor (U2 snRNP auxiliary factor large subunit)
[Cryptococcus gattii WM276]
gi|317461409|gb|ADV23150.1| Splicing factor (U2 snRNP auxiliary factor large subunit), putative
[Cryptococcus gattii WM276]
Length = 654
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 129/235 (54%), Gaps = 23/235 (9%)
Query: 137 PSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFS 196
P VP A +P GAFP R R+Y+GG+ E I FF+
Sbjct: 248 PGRVPPPAHLGIP-ATFVAGAFP-------PSNPVRQNNRLYIGGIKEDMQENQIQDFFN 299
Query: 197 QVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRP 256
+M G + G D V IN+++ FAF+E+ T E+A+ A+ LDG++ +G ++RVRRP
Sbjct: 300 NLMKE-KGMADGKEDPVKQCQINNDRNFAFIELHTPEQATAALELDGVVLDGASLRVRRP 358
Query: 257 TDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLE 316
DY A + P + N G+ + ++ A+ P+++F+GG+P Y + Q+ ELL+
Sbjct: 359 KDY-----AGIDPLLQTFN------GIVAPSV--ADSPNKLFIGGIPTYLNDEQVMELLK 405
Query: 317 SFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
SFG L F+LVK+ G SKG+ F Y DP VTD+A L+ +GD+ L V+RA
Sbjct: 406 SFGELKSFNLVKE-SAGVSKGFAFAEYLDPEVTDMAIQGLHNFALGDRNLVVQRA 459
>gi|353240191|emb|CCA72072.1| related to pre-mRNA splicing factor U2AF large chain
[Piriformospora indica DSM 11827]
Length = 403
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 130/237 (54%), Gaps = 40/237 (16%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTA--IGGNSAGPGDAVVNV 216
P+ V R +RR+Y+G + PLA+E++IA FF+ M + +SA P V+ V
Sbjct: 31 PVATGMVSNSNLARQSRRLYLGSITPLADEESIALFFNSQMRERKLTTSSAPP---VLAV 87
Query: 217 YINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNL 276
+N EK +AFVE R+ E+A+ MALDG +F +RVRRP DY GP
Sbjct: 88 QVNREKNYAFVEFRSAEDATAGMALDGTVFLDGPLRVRRPHDYA-------GPE------ 134
Query: 277 NLAAVGLASGA-IGGAEGPD---RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
A G+A A + A PD ++F+G LP + TE QI ELL+SFG L F+LV++ T
Sbjct: 135 --AMTGVAGFATLLPATMPDSVNKIFIGNLPTHLTEDQIVELLKSFGELKAFNLVREHGT 192
Query: 333 GNSK----------------GYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
SK G+ F Y DPAVTDIA +LNG+ +GDK L V+RA+
Sbjct: 193 NVSKVFTVRITLSMNLTGSQGFAFVEYADPAVTDIATESLNGMDLGDKKLVVQRASV 249
>gi|195346998|ref|XP_002040041.1| GM15574 [Drosophila sechellia]
gi|194135390|gb|EDW56906.1| GM15574 [Drosophila sechellia]
Length = 445
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 122/212 (57%), Gaps = 11/212 (5%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP----GDAVVNVYINHEKKFAF 226
TR ARR+YVG +P E+ + FF+ + A G + G AV+ + EK FAF
Sbjct: 103 TRQARRLYVGNIPFGVTEEEMMQFFNHRIMAQGYEAKSSHYMDGKAVLTCQTHLEKNFAF 162
Query: 227 VEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASG 286
+E R+++EA+ A+ DG+++ G +++RRP DY P + + + + + A +A+
Sbjct: 163 LEFRSIDEATQALNFDGMVYRGQTLKIRRPHDYQPVPSISFSAMENYRSFRVPATTIANP 222
Query: 287 -------AIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
+ P++++VGGLP + Q+KELL+SFG L G +LV D +T +KG+
Sbjct: 223 PNVTIPVTTIVPDSPNKIYVGGLPTCLNQDQVKELLQSFGELKGLNLVMDGNTSLNKGFA 282
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
F Y DP VTD A A L+G+ +GD+ L V+R+
Sbjct: 283 FFEYYDPLVTDHAIAGLHGMLLGDRRLVVQRS 314
>gi|380481793|emb|CCF41637.1| U2 snRNP auxilliary factor [Colletotrichum higginsianum]
Length = 550
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 149/322 (46%), Gaps = 46/322 (14%)
Query: 78 RRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRR-SGFDMAPPA-----------AAMLP 125
RR R RS + + R + L+ S + KRR + +D+ PP + M P
Sbjct: 128 RRERQRSATPPPKK-REPTPDLTDITSVLERKRRLTQWDIKPPGYENVTAEQAKLSGMFP 186
Query: 126 GAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPL 185
P Q P PS + Q ++ Q+ + L P +R A+R+ + LPP
Sbjct: 187 LPGAPRQQPIDPSKL----QAIMNQPGGQVNSAALKPSN------SRQAKRLLINNLPPS 236
Query: 186 ANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGII 245
A E++I +FF+ + G N D + ++ + FA VE R EA+ A+ALDGI
Sbjct: 237 ATEESIQSFFNLQLN--GLNIIESADPCTSCQVSKDNSFAVVEFRNASEATIALALDGIS 294
Query: 246 FEG----------VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPD 295
E + + RP DY P +P G+ S + + P
Sbjct: 295 MEADDATNGEAANQGLSIHRPKDYIVPAVVDDVPYEP---------GVVSNVV--IDTPS 343
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++ + LP Y ++ Q+ ELL SFG L F LV+DR T S+G FC Y DPA TD+A
Sbjct: 344 KLSIANLPTYLSDEQVSELLVSFGELKAFVLVRDRSTEESRGIAFCEYVDPAATDVAIQG 403
Query: 356 LNGLKMGDKTLTVRRATASSGQ 377
LNG+ +GDK L V++A+ Q
Sbjct: 404 LNGMDLGDKKLRVQKASVGVTQ 425
>gi|406867695|gb|EKD20733.1| U2 snRNP auxilliary factor [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 613
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/344 (30%), Positives = 156/344 (45%), Gaps = 60/344 (17%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P P ++L AF P
Sbjct: 201 RKRRLTQWDIKPPGYENVTAEQAKLSGMFPLPGAP--------RQQPMDPSKLQAFMSQP 252
Query: 163 VQVMTQQA-----TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
+T A +R A+R+ V LPP NE+AI FF+ + G N D V+
Sbjct: 253 SGSVTNAALKPSNSRQAKRLLVSNLPPTVNEEAIVNFFNLQLN--GLNVIEGSDPCVSAQ 310
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFE-----GVA-------VRVRRPTDYNPTLAA 265
I+ +K FA +E + +A+ A+ALDGI E G A + +RRP DY +
Sbjct: 311 ISKDKTFALLEFKQTSDATIALALDGITMEDEHMNGSATNGDTQGLSIRRPKDY---IVP 367
Query: 266 ALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFD 325
+ P G+ S + + +++ + +P Y T+ Q+ ELL SFG L F
Sbjct: 368 TITDETP------FEAGVISNVV--VDTQNKISISNIPLYLTDEQVTELLVSFGELKAFV 419
Query: 326 LVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESI 385
LVKD T S+G FC Y DP TDIA LNG+++GDK L V+RA+
Sbjct: 420 LVKDNGTDESRGIAFCEYVDPVATDIAVEGLNGMELGDKHLKVQRASIG----------- 468
Query: 386 LAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
H + + + + M+ L G S G +VL L M+
Sbjct: 469 ------HTQVSGLEMSVNAMSMLAGTTSQ-GLEEGRVLQLLNMV 505
>gi|310793965|gb|EFQ29426.1| U2 snRNP auxilliary factor [Glomerella graminicola M1.001]
Length = 549
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 150/322 (46%), Gaps = 46/322 (14%)
Query: 78 RRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRR-SGFDMAPPA-----------AAMLP 125
RR R RS + + R + L+ S + KRR + +D+ PP + M P
Sbjct: 127 RRERQRSATPPPKK-REPTPDLTDVTSVLERKRRLTQWDIKPPGYENVTAEQAKLSGMFP 185
Query: 126 GAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPL 185
P Q P PS + Q ++ Q+ + L P +R A+R+ + LPP
Sbjct: 186 LPGAPRQQPMDPSKL----QAIMNQPGGQVNSAALKPSN------SRQAKRLLINNLPPS 235
Query: 186 ANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGII 245
A E+ I FF+ + G N D + ++ + FA VE R EA+ A+ALDGI
Sbjct: 236 ATEEGIQNFFNLQLN--GLNIIESTDPCTSCQVSKDHSFAVVEFRNASEATVALALDGIS 293
Query: 246 FE------GVA----VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPD 295
E G A + +RRP DY P +P G+ S + + +
Sbjct: 294 MEAEDATNGAAADQGLVIRRPKDYIVPAVVDDVPYEP---------GVVSNVV--VDTHN 342
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++ V +P Y +E Q+ ELL SFG L F LV+D+ T S+G FC Y DPA TD+A
Sbjct: 343 KISVANMPVYLSEEQVSELLVSFGELKAFVLVRDKSTEESRGIAFCEYVDPAATDVAIQG 402
Query: 356 LNGLKMGDKTLTVRRATASSGQ 377
LNG+ +GDK L V++A+ Q
Sbjct: 403 LNGMDLGDKRLKVQKASVGVTQ 424
>gi|402906865|ref|XP_003916203.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Papio anubis]
Length = 446
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 108/336 (32%), Positives = 155/336 (46%), Gaps = 67/336 (19%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
RSP K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 78 RSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT- 135
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+
Sbjct: 136 -------PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVL 187
Query: 215 NVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPS 273
V IN +K FAF+E+ + + AL + F V P
Sbjct: 188 AVQINQDKNFAFLEVSWGNRSGPVLCALAMLTFPEWVVSTVVP----------------- 230
Query: 274 PNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG 333
+ ++F+GGLP Y + Q+KELL SFG L F+LVKD TG
Sbjct: 231 ------------------DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG 272
Query: 334 NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHI 393
SKGY FC Y D VTD A A LNG+++GDK L V+RA+ + + ++ Q +
Sbjct: 273 LSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNA-----TLSTINQTPV 327
Query: 394 AIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+Q L +S + +GG + +VLCL M+
Sbjct: 328 TLQVPGLMSSQVQ-MGGHPT-------EVLCLMNMV 355
>gi|346978171|gb|EGY21623.1| splicing factor U2AF 50 kDa subunit [Verticillium dahliae VdLs.17]
Length = 589
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 140/284 (49%), Gaps = 40/284 (14%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P P T+L AF P
Sbjct: 173 RKRRLTQWDIKPPGYENVTAEQAKLSGMFPLPGAP--------RQQPMDPTKLQAFMNQP 224
Query: 163 VQV----MTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
V + +R A+R+ V LP A E ++A+FF+ + G N D V+ +
Sbjct: 225 GTVNSASLKPSNSRQAKRLLVSKLPSSATEDSVASFFNLQLN--GLNVIESTDPCVSCQL 282
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFE---------GVAVRVRRPTDY-NPTLAAALG 268
+++K F VE R EA+ A+ALDGI E G + +RRP DY P + L
Sbjct: 283 SNDKSFCVVEFRNASEATVALALDGISMEADSATDGAAGRGLEIRRPKDYIVPAVTEEL- 341
Query: 269 PGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328
P +P G+ S + + P+++ + G P Y TE Q+ ELL SFG L F LV+
Sbjct: 342 PYEP---------GVVSSNV--VDTPNKLSITGFPPYLTEEQVTELLTSFGELKAFVLVR 390
Query: 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
DR T S+G+ FC Y D A D+A L+G+ +G+ L +++A+
Sbjct: 391 DRHTDESRGFVFCEYVDSAANDVAIQGLSGMDLGNSKLKIQKAS 434
>gi|296420976|ref|XP_002840043.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636253|emb|CAZ84234.1| unnamed protein product [Tuber melanosporum]
Length = 540
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 127/251 (50%), Gaps = 24/251 (9%)
Query: 133 LPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQA-----TRHARRVYVGGLPPLAN 187
LPG P P T+L AF P V T +R A+R+ + +PP +
Sbjct: 185 LPGAPRQAP--------MDPTRLHAFMTQPSNVATASTLKPTNSRQAKRLLMSNIPPGTD 236
Query: 188 EQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFE 247
E+++ FF+Q ++++ + GP D + +V ++ K +E + +A+ +AL GI F
Sbjct: 237 EESLLQFFNQTLSSLNVTTGGP-DPITSVQLSGSKILGLLEFKNTNDATVCLALSGIEFN 295
Query: 248 GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFT 307
G + ++RP DY + P P + + G+ S + + P+++ + +P Y
Sbjct: 296 GGNIEIKRPRDY-------IVPIVPEDHRHQEP-GVISSDV--PDTPNKILISEIPEYLQ 345
Query: 308 ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367
+ Q+ ELL+SFG L F LVKD SKG FC Y DP T+IA LN +++ D TL
Sbjct: 346 DEQVIELLKSFGDLKAFVLVKDVTDETSKGIAFCEYLDPGTTEIAVEGLNAMEIADNTLR 405
Query: 368 VRRATASSGQS 378
VRRA+ Q+
Sbjct: 406 VRRASIGMKQA 416
>gi|440633242|gb|ELR03161.1| hypothetical protein GMDG_05987 [Geomyces destructans 20631-21]
Length = 559
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 140/285 (49%), Gaps = 35/285 (12%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P P ++L AF P
Sbjct: 173 RKRRLTQWDIKPPGYENVTAEQAKLSGMFPLPGAP--------RQQPMDPSKLQAFMSQP 224
Query: 163 VQVMTQQA-----TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
+T A +R A+R+ V LP +E+ I FF+ + G N D +
Sbjct: 225 SGSITNAALKPSNSRQAKRLLVHNLPKTLSEEGIVEFFNLQLN--GLNVVEGSDPCLTAQ 282
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFE----GVAVRVRRPTDYNPTLAAALGPGQPS 273
++ +K FA VE +T +A+ A+A+DGI E A+ +RRP DY + A+
Sbjct: 283 VSKDKSFALVEFKTTSDATVALAMDGIGIEENGGSRALSIRRPKDY---IVPAVDEAMHE 339
Query: 274 PNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG 333
P G+ + + + P+++ + +P Y T+ Q+ ELL SFG L F L KD T
Sbjct: 340 P-------GVVTNVV--PDTPNKISISNVPPYLTDEQVTELLVSFGELKAFVLAKDSTTE 390
Query: 334 NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
S+G FC Y D A TDIA LNG+++GDK L V+RA+ + Q+
Sbjct: 391 ESRGIAFCEYVDAAATDIAVEGLNGMELGDKHLKVQRASIGTTQT 435
>gi|307106531|gb|EFN54776.1| hypothetical protein CHLNCDRAFT_58050 [Chlorella variabilis]
Length = 354
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 71/85 (83%)
Query: 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
+ GA+ +R+F+GGLPYY TE Q +ELL SFG + FDLVKD++TG SKGYGFCVY+DP
Sbjct: 148 MSGADAAERIFIGGLPYYLTEEQCRELLASFGAIKSFDLVKDKETGQSKGYGFCVYEDPR 207
Query: 348 VTDIACAALNGLKMGDKTLTVRRAT 372
VTD+AC LNG++MGD+TLTVRRAT
Sbjct: 208 VTDVACQGLNGMRMGDRTLTVRRAT 232
>gi|326428095|gb|EGD73665.1| U2 small nuclear ribonucleoprotein auxiliary factor 2 isoform 2
[Salpingoeca sp. ATCC 50818]
Length = 415
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 112/201 (55%), Gaps = 16/201 (7%)
Query: 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEE 234
R++ V LP + + +F + + A PG V+ ++ + K A +E R+V+E
Sbjct: 36 RQLVVENLPEGTRDHDLMSFMNDCI-ASNKLITQPGQPVIKCTLSEDGKSAVLEFRSVDE 94
Query: 235 ASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGA--- 291
A+N + D F+G +RVRRP +Y +P ++ + + SGA A
Sbjct: 95 ATNGLVFDRERFKGAQLRVRRPDNYE------------APKGHITRIPMQSGANVSAVVQ 142
Query: 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDI 351
+ P ++++GG+P Y +E Q+KELLE FG L F LV D TG SKG+ FC Y DPA+TD
Sbjct: 143 DSPYKIYIGGIPPYLSEEQVKELLEPFGQLKSFHLVMDTSTGQSKGFAFCEYMDPAITDT 202
Query: 352 ACAALNGLKMGDKTLTVRRAT 372
ALN L++G+K L V+RA+
Sbjct: 203 MIGALNDLRIGEKRLLVQRAS 223
>gi|154319442|ref|XP_001559038.1| hypothetical protein BC1G_02202 [Botryotinia fuckeliana B05.10]
Length = 596
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 142/293 (48%), Gaps = 43/293 (14%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P P ++L AF P
Sbjct: 200 RKRRLTQWDIKPPGYENVTAEQAKLSGMFPLPGAP--------RQQPMDPSKLQAFMAQP 251
Query: 163 VQVMTQQA-----TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
+T A +R ++R+ V +P E+ I +FF+ + G N D +++
Sbjct: 252 SGQVTNAALKPSNSRQSKRLLVHNIPADTKEETIVSFFNLQLN--GLNVIEGSDPLISAQ 309
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFEGV-------------AVRVRRPTDYNPTLA 264
++ + FA +E +T +A+ A+ALDGI +G + +RRP DY
Sbjct: 310 VSKDGSFALLEFKTQSDATVALALDGITMDGNDHMETENGSADTRGLSIRRPKDYIVPAV 369
Query: 265 AALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324
P +P G+ S + A+ +++ V +P+Y + Q+ ELL SFG L F
Sbjct: 370 TDETPFEP---------GVISNVV--ADTQNKISVTNIPHYLNDEQVTELLVSFGELKAF 418
Query: 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQ 377
LVKD +T S+G FC Y DPA TDIA LNG+++GDK L V+RA+ + Q
Sbjct: 419 VLVKDSNTDESRGIAFCEYVDPAATDIAVEGLNGMELGDKHLKVQRASIGNTQ 471
>gi|347842431|emb|CCD57003.1| hypothetical protein [Botryotinia fuckeliana]
Length = 606
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 142/293 (48%), Gaps = 43/293 (14%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P P ++L AF P
Sbjct: 210 RKRRLTQWDIKPPGYENVTAEQAKLSGMFPLPGAP--------RQQPMDPSKLQAFMAQP 261
Query: 163 VQVMTQQA-----TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
+T A +R ++R+ V +P E+ I +FF+ + G N D +++
Sbjct: 262 SGQVTNAALKPSNSRQSKRLLVHNIPADTKEETIVSFFNLQLN--GLNVIEGSDPLISAQ 319
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFEGV-------------AVRVRRPTDYNPTLA 264
++ + FA +E +T +A+ A+ALDGI +G + +RRP DY
Sbjct: 320 VSKDGSFALLEFKTQSDATVALALDGITMDGNDHMETGNGSADTRGLSIRRPKDYIVPAV 379
Query: 265 AALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324
P +P G+ S + A+ +++ V +P+Y + Q+ ELL SFG L F
Sbjct: 380 TDETPFEP---------GVISNVV--ADTQNKISVTNIPHYLNDEQVTELLVSFGELKAF 428
Query: 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQ 377
LVKD +T S+G FC Y DPA TDIA LNG+++GDK L V+RA+ + Q
Sbjct: 429 VLVKDSNTDESRGIAFCEYVDPAATDIAVEGLNGMELGDKHLKVQRASIGNTQ 481
>gi|344251408|gb|EGW07512.1| Splicing factor U2AF 65 kDa subunit [Cricetulus griseus]
Length = 422
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 117/203 (57%), Gaps = 28/203 (13%)
Query: 230 RTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIG 289
R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++ G+ S +
Sbjct: 26 RSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVPGVVSTVV- 77
Query: 290 GAEGPD---RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDP 346
PD ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY FC Y D
Sbjct: 78 ----PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDI 133
Query: 347 AVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMN 406
VTD A A LNG+++GDK L V+RA+ + + ++ Q + +Q L +S +
Sbjct: 134 NVTDQAIAGLNGMQLGDKKLLVQRASVGAKNA-----TLSTINQTPVTLQVPGLMSSQVQ 188
Query: 407 TLGGGMSLFGETLAKVLCLTEMM 429
+GG + +VLCL M+
Sbjct: 189 -MGGHPT-------EVLCLMNMV 203
>gi|449680331|ref|XP_002158219.2| PREDICTED: splicing factor U2AF 50 kDa subunit-like, partial [Hydra
magnipapillata]
Length = 259
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 98/157 (62%), Gaps = 10/157 (6%)
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
R+VEE + AMA DGI+ +G A+++RRP DY P + P G+ S +
Sbjct: 1 FRSVEETTLAMAFDGIMLQGQALKIRRPKDYQPIPGISEMQATHIP-------GVVSTVV 53
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
++ ++VFVGGLP Y E Q+KELL +FG L F+LVKD TG SKGY FC Y D +
Sbjct: 54 --SDTINKVFVGGLPNYLNEDQVKELLSTFGDLRSFNLVKDSATGLSKGYAFCEYVDIGI 111
Query: 349 TDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESI 385
TD+A A +NG+++GDK L V+RA+ S ++ T Q +I
Sbjct: 112 TDVAIAGMNGMQLGDKKLVVQRASVGS-KTMTAQLNI 147
>gi|429854658|gb|ELA29655.1| splicing factor u2af large subunit [Colletotrichum gloeosporioides
Nara gc5]
Length = 559
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 138/292 (47%), Gaps = 44/292 (15%)
Query: 107 KSKRRSGFDMAPPA-----------AAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQL 155
+ +R + +D+ PP + M P P Q P PS + Q ++ Q+
Sbjct: 166 RKRRLTQWDIKPPGYENVTAEQAKLSGMFPLPGAPRQQPMDPSKL----QAIMNQPGGQV 221
Query: 156 GAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVN 215
+ L P +R A+R+ + LPP A E +I FF+ + G N D +
Sbjct: 222 NSAALKPSN------SRQAKRLLINNLPPSATEDSIVGFFNLQLN--GLNVIESTDPCTS 273
Query: 216 VYINHEKKFAFVEMRTVEEASNAMALDGIIFE------GVA----VRVRRPTDYNPTLAA 265
++ + FA VE R EA+ A+ALDGI E G A + +RRP DY
Sbjct: 274 CQLSKDHSFAVVEFRNASEATVALALDGITMEADDATNGAAGSNGLVIRRPKDYIVPAVV 333
Query: 266 ALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFD 325
P +P G+ S + + P+++ + +P Y ++ Q+ ELL SFG L F
Sbjct: 334 DDVPYEP---------GVVSNIV--IDTPNKISIANMPPYLSDEQVTELLVSFGELKAFV 382
Query: 326 LVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQ 377
LV+D+ T S+G FC Y +P+ TD+A LNG+ +GDK L V++A+ Q
Sbjct: 383 LVRDKSTEESRGIAFCEYVEPSATDVAIQGLNGMDLGDKKLRVQKASVGVTQ 434
>gi|307106441|gb|EFN54687.1| hypothetical protein CHLNCDRAFT_53018 [Chlorella variabilis]
Length = 247
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 110/213 (51%), Gaps = 36/213 (16%)
Query: 164 QVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVN-VYINHEK 222
Q+ A R A+RVYVG LP +E + +++M G GD + N ++ +K
Sbjct: 68 QLFNPDAARPAKRVYVGNLPAAVSEAELRQAVNELM--------GNGDLLFNGMHQVQDK 119
Query: 223 KFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVG 282
+AFVE R+VEEASNAMALDG+ F +++ VG
Sbjct: 120 GYAFVEFRSVEEASNAMALDGVKFHDSYLKL---------------------------VG 152
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
L + P ++F+GGLP ++E Q+KE+L FG L F+LV DR TGNSKGY F
Sbjct: 153 LEVVKTVVQDSPHKLFIGGLPCDWSEDQVKEMLMPFGQLKAFNLVMDRGTGNSKGYAFAE 212
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
+ D VTDI LNG K LTV+RA A S
Sbjct: 213 FMDVHVTDIVIQNLNGKPCNTKFLTVKRALAPS 245
>gi|302411252|ref|XP_003003459.1| splicing factor U2AF 65 kDa subunit [Verticillium albo-atrum
VaMs.102]
gi|261357364|gb|EEY19792.1| splicing factor U2AF 65 kDa subunit [Verticillium albo-atrum
VaMs.102]
Length = 568
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 115/399 (28%), Positives = 178/399 (44%), Gaps = 89/399 (22%)
Query: 40 FKSGGDDRRRDKNYKYDREGIRDHDRTDRH--------RDYNRDK--------------- 76
++ G + D +Y R R+ +R DR+ RD++RD+
Sbjct: 63 YERGSRRQENDDSYAASRSH-REREREDRYSGRDRRAERDWDRDRGSSRRDARRDDDDRG 121
Query: 77 -----------ERRHRHRSRSHSSDRFRNRSKSLSP---SRSPS-----------KSKRR 111
+RR R R+ R R +S SP R P+ + +R
Sbjct: 122 ARRGGDRDQFDDRRRGGRDRNEEFARREQRPRSASPPPKKREPTPDLTDIVSVLDRKRRL 181
Query: 112 SGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQV-- 165
+ +D+ PP + A + G LPG P P T+L AF P V
Sbjct: 182 TQWDIKPPGYENVTAEQAKLSGMFPLPGAP--------RQQPMDPTKLQAFMNQPGTVNS 233
Query: 166 --MTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK 223
+ +R A+R+ V LP A E+++A+FF+ + G N D V+ ++++K
Sbjct: 234 ASLKPSNSRQAKRLLVSKLPSSATEESVASFFNLQLN--GLNVIESTDPCVSCQLSNDKS 291
Query: 224 FAFVEMRTVEEASNAMALDGIIFE---------GVAVRVRRPTDY-NPTLAAALGPGQPS 273
F VE R EA+ A+ALDGI E G + +RRP DY P + L P +P
Sbjct: 292 FCVVEFRNASEATVALALDGISMEADSGTDGAAGRGMEIRRPKDYIVPAVTEEL-PYEP- 349
Query: 274 PNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG 333
G+ S + + P+++ + G P Y TE Q+ ELL SFG L F LV+DR T
Sbjct: 350 --------GVVSSNV--VDTPNKLSITGFPPYLTEEQVTELLTSFGELKAFVLVRDRHTD 399
Query: 334 NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
S+G+ FC Y D A D+A L+G+ +G+ L +++A+
Sbjct: 400 ESRGFVFCEYVDSAANDVAIQGLSGMDLGNSKLKIQKAS 438
>gi|336274240|ref|XP_003351874.1| hypothetical protein SMAC_00421 [Sordaria macrospora k-hell]
gi|380096157|emb|CCC06204.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 594
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 163/343 (47%), Gaps = 60/343 (17%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P Q M P T+L AF P
Sbjct: 201 RKRRMTQWDIKPPGYGNVTAEQAKLSGMFPLPGAPRQ-----QAMDP---TKLQAFMTQP 252
Query: 163 VQVMTQQA-----TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
+ A +R ++R+ V +PP A ++++ FF+ + G N D V
Sbjct: 253 GGTVNSTALKPTNSRQSKRLIVSNIPPSATDESLLGFFNLQLN--GLNVIDSVDPCVQCQ 310
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFEGV---------AVRVRRPTDYNPTLAAALG 268
I+ + FA VE R +A+ A+ALDGI E +++RRP DY + A+
Sbjct: 311 ISPDHSFAMVEFRNSPDATVALALDGITMEADDANDAASAGGLKIRRPKDY---IVPAI- 366
Query: 269 PGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328
PN + + ++ I + P+++ V +P Y TE QI ELL +FG L F LVK
Sbjct: 367 --VEDPNYDPDSEVPSNIVI---DSPNKISVTNIPAYLTEEQIMELLVAFGKLKSFVLVK 421
Query: 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQ 388
D+ T S+G FC Y D +VT +A LN + +GD+ L V++A+
Sbjct: 422 DKHTEESRGIAFCEYHDSSVTSVAIDGLNNMMLGDRALKVQKAS---------------- 465
Query: 389 AQQHIAIQKMA--LQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
IQ++A L + M+ L G SL G+ +++V+ L M+
Sbjct: 466 ----YGIQQVAGELSVNAMSMLAGTTSLDGD-VSRVVQLLNMV 503
>gi|85111663|ref|XP_964044.1| hypothetical protein NCU03039 [Neurospora crassa OR74A]
gi|28925805|gb|EAA34808.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 584
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 102/343 (29%), Positives = 163/343 (47%), Gaps = 60/343 (17%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P Q M P T+L AF P
Sbjct: 191 RKRRMTQWDIKPPGYGNVTAEQAKLSGMFPLPGAPRQ-----QAMDP---TKLQAFMTQP 242
Query: 163 VQVMTQQA-----TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
+ A +R ++R+ V +PP A ++++ FF+ + G N D V
Sbjct: 243 GGAVNSAALKPTNSRQSKRLIVSNIPPSATDESLLGFFNLQLN--GLNVIDSADPCVQCQ 300
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFEG---------VAVRVRRPTDYNPTLAAALG 268
I+ + FA +E R +A+ A+ALDGI E +++RRP DY + A+
Sbjct: 301 ISPDHSFAMLEFRNSPDATVALALDGITMEAEDANGAAGAGGLKIRRPKDY---IVPAI- 356
Query: 269 PGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328
PN + + +S I + P+++ V +P Y +E QI ELL +FG L F LVK
Sbjct: 357 --VEDPNYDPDSEVPSSIVI---DSPNKISVTNIPAYLSEEQIMELLVAFGKLKSFVLVK 411
Query: 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQ 388
D+ T S+G FC Y D +VT +A LN + +GD+ L V++A+
Sbjct: 412 DKHTEESRGIAFCEYHDSSVTSVAIDGLNNMMLGDRALKVQKAS---------------- 455
Query: 389 AQQHIAIQKMA--LQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
IQ++A L + M+ L G SL G+ +++V+ L M+
Sbjct: 456 ----YGIQQVAGELSVNAMSMLAGTTSLDGD-VSRVVQLLNMV 493
>gi|146170296|ref|XP_001470832.1| hypothetical protein TTHERM_00484731 [Tetrahymena thermophila]
gi|146145092|gb|EDK31651.1| hypothetical protein TTHERM_00484731 [Tetrahymena thermophila
SB210]
Length = 471
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 117/216 (54%), Gaps = 7/216 (3%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGG--NSAGPGDAVVNVYINH 220
+++ Q RHARR+Y+G +P N++ ++ + + + A GG S + +V I+
Sbjct: 22 IKLDNQSGYRHARRLYIGNIPETINQEYLSEWLYRSLEAAGGLQPSLPSENPIVKCEIDP 81
Query: 221 EKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYN--PTLAAALGPGQPSPNLNL 278
+ +FAF E+R++EE + + LDGII +R+RRPT+Y P + P N +L
Sbjct: 82 KGRFAFTELRSIEETTALLQLDGIILWHRQLRIRRPTEYEKFPKVQGQFEANIPKLNFDL 141
Query: 279 -AAVGLASGAIGGAEGPDRVFVGGLPYYFTETQI-KEL-LESFGTLHGFDLVKDRDTGNS 335
VG+ +GP+++F+ LP E I EL L G + F LVKD T S
Sbjct: 142 FKTVGIVIIPTIVDDGPNKIFLANLPTKMDELMILDELKLRDMGEIKAFHLVKDNQTNQS 201
Query: 336 KGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
KGY F ++DP++TD L+G++ +TLT +R+
Sbjct: 202 KGYAFFEFKDPSLTDNCIETLHGMQYAGRTLTCKRS 237
>gi|336465212|gb|EGO53452.1| hypothetical protein NEUTE1DRAFT_92746 [Neurospora tetrasperma FGSC
2508]
Length = 584
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 102/343 (29%), Positives = 163/343 (47%), Gaps = 60/343 (17%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P Q M P T+L AF P
Sbjct: 191 RKRRMTQWDIKPPGYGNVTAEQAKLSGMFPLPGAPRQ-----QAMDP---TKLQAFMTQP 242
Query: 163 VQVMTQQA-----TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
+ A +R ++R+ V +PP A ++++ FF+ + G N D V
Sbjct: 243 GGAVNSTALKPTNSRQSKRLIVSNIPPSATDESLLGFFNLQLN--GLNVIDSADPCVQCQ 300
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFEG---------VAVRVRRPTDYNPTLAAALG 268
I+ + FA +E R +A+ A+ALDGI E +++RRP DY + A+
Sbjct: 301 ISPDHSFAMLEFRNSPDATVALALDGITMEAEDANGAAGAGGLKIRRPKDY---IVPAI- 356
Query: 269 PGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328
PN + + +S I + P+++ V +P Y +E QI ELL +FG L F LVK
Sbjct: 357 --VEDPNYDPDSEVPSSIVI---DSPNKISVTNIPAYLSEEQIMELLVAFGKLKSFVLVK 411
Query: 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQ 388
D+ T S+G FC Y D +VT +A LN + +GD+ L V++A+
Sbjct: 412 DKHTEESRGIAFCEYHDSSVTSVAIDGLNNMMLGDRALKVQKAS---------------- 455
Query: 389 AQQHIAIQKMA--LQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
IQ++A L + M+ L G SL G+ +++V+ L M+
Sbjct: 456 ----YGIQQVAGELSVNAMSMLAGTTSLDGD-VSRVVQLLNMV 493
>gi|241166827|ref|XP_002409934.1| splicing factor u2af large subunit, putative [Ixodes scapularis]
gi|215494685|gb|EEC04326.1| splicing factor u2af large subunit, putative [Ixodes scapularis]
Length = 444
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 121/243 (49%), Gaps = 28/243 (11%)
Query: 171 TRHARRVYVGGLP--------PLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEK 222
TR ARR+YVG +P PL + + +F+ M A G + A PG+ V+ IN +K
Sbjct: 112 TRQARRLYVGNIPFGCSEASRPLLLREEMMDYFNAQMHACGFSQA-PGNPVLACQINLDK 170
Query: 223 KFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDY--NPTLAAALGPGQPSPNLNLAA 280
FAF+E+ ++ + DY P LG G +P
Sbjct: 171 NFAFLEVSALDTDLGTPCCPTFVL----------YDYLSPPFSGNCLGAGNGTPGDTW-- 218
Query: 281 VGLASGAIGGA--EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
+G SG I + P ++F+GGLP Y E Q++ELL SFG L F+LVKD TG SKGY
Sbjct: 219 LGFLSGVISTVVQDSPHKIFIGGLPNYLNEDQVRELLMSFGQLRAFNLVKDSATGLSKGY 278
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKM 398
FC Y + TD A LNG+++GDK L V+RA+ +K Q ++ A I + +
Sbjct: 279 AFCEYVEVTTTDQAIMGLNGMQLGDKKLIVQRASVG---AKNSQMNVSRDAPVQIQVPGL 335
Query: 399 ALQ 401
LQ
Sbjct: 336 QLQ 338
>gi|350295506|gb|EGZ76483.1| hypothetical protein NEUTE2DRAFT_76972 [Neurospora tetrasperma FGSC
2509]
Length = 592
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/343 (29%), Positives = 163/343 (47%), Gaps = 60/343 (17%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P Q M P T+L AF P
Sbjct: 199 RKRRMTQWDIKPPGYGNVTAEQAKLSGMFPLPGAPRQ-----QAMDP---TKLQAFMTQP 250
Query: 163 VQVMTQQA-----TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
+ A +R ++R+ V +PP A ++++ FF+ + G N D V
Sbjct: 251 GGAVNSAALKPTNSRQSKRLIVSNIPPSATDESLLGFFNLQLN--GLNVIDSADPCVQCQ 308
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFEG---------VAVRVRRPTDYNPTLAAALG 268
I+ + FA +E + +A+ A+ALDGI E +++RRP DY + A+
Sbjct: 309 ISPDHSFAMLEFKNSPDATVALALDGITMEAEDANGAAGAGGLKIRRPKDY---IVPAI- 364
Query: 269 PGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328
PN + + +S I + P+++ V +P Y +E QI ELL +FG L F LVK
Sbjct: 365 --VEDPNYDPDSEVPSSIVI---DSPNKISVTNIPAYLSEEQIMELLVAFGKLKSFVLVK 419
Query: 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQ 388
D+ T S+G FC Y D +VT +A LN + +GD+ L V++A+
Sbjct: 420 DKHTEESRGIAFCEYHDSSVTSVAIDGLNNMMLGDRALKVQKAS---------------- 463
Query: 389 AQQHIAIQKMA--LQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
IQ++A L + M+ L G SL G+ +++V+ L M+
Sbjct: 464 ----YGIQQVAGELSVNAMSMLAGTTSLDGD-VSRVVQLLNMV 501
>gi|156061663|ref|XP_001596754.1| hypothetical protein SS1G_02977 [Sclerotinia sclerotiorum 1980]
gi|154700378|gb|EDO00117.1| hypothetical protein SS1G_02977 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 518
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 138/293 (47%), Gaps = 43/293 (14%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P P ++L AF P
Sbjct: 125 RKRRLTQWDIKPPGYENVTAEQAKLSGMFPLPGAP--------RQQPMDPSKLQAFMAQP 176
Query: 163 VQVMTQQA-----TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
+T A +R ++R+ V +P E+ + FF+ + G N D ++
Sbjct: 177 SGSVTNAALKPSNSRQSKRLLVHNIPADTKEETLVGFFNLQLN--GLNVIEGSDPCISAQ 234
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFEG-------------VAVRVRRPTDYNPTLA 264
++ + FA +E +T +A+ A+ALDGI E + +RRP DY
Sbjct: 235 VSKDGSFALLEFKTQSDATVALALDGITMENNDHMVTGNGSADTQGLSIRRPKDYIVPAV 294
Query: 265 AALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324
P +P G+ S + + +++ V +P+Y + Q+ ELL SFG L F
Sbjct: 295 TDETPFEP---------GVVSNIVPDTQ--NKISVANIPHYLNDEQVTELLVSFGELKAF 343
Query: 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQ 377
LVKD +T S+G FC Y DPA TDIA LNG+++GDK L V+RA+ + Q
Sbjct: 344 VLVKDSNTDESRGIAFCEYVDPAATDIAVEGLNGMELGDKHLKVQRASIGNTQ 396
>gi|452979953|gb|EME79715.1| hypothetical protein MYCFIDRAFT_81194 [Pseudocercospora fijiensis
CIRAD86]
Length = 552
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 106/374 (28%), Positives = 168/374 (44%), Gaps = 59/374 (15%)
Query: 77 ERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRR-SGFDMAPPAAAMLPG--AAVPGQ- 132
ER+ +S S + R + L+ S + KRR + +D+ PP + A + G
Sbjct: 126 ERQTARKSASPPPKKPREPTPDLTDVVSILERKRRLTQWDIKPPGYENVTAEQAKLSGMF 185
Query: 133 -LPGVPSAVPEMAQNMLPF---GATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANE 188
LPG P P Q + F Q + L P + R ++R+ + +P A +
Sbjct: 186 PLPGAPRQQPMDPQKLQAFMNQPGNQASSTALKP------SSARQSKRLLIHNIPAAATD 239
Query: 189 QAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIF-- 246
I FF+ + G N D V+ I+ E +A VE +T E+A+NAMA DGI
Sbjct: 240 DNIVDFFNLQLN--GLNVTRGQDPCVSAQISKENGYALVEFKTPEDATNAMAFDGINMMP 297
Query: 247 ---------EGVA--VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPD 295
G A ++++RP DY + + +P+ G+ SG + + +
Sbjct: 298 DAMDTNGDSNGTAKGLQIKRPKDY---IVPNVTDETENPS------GILSGVVPDTQ--N 346
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++ + LP + E QI+ELL SFG L F LVKD T S+G FC Y+DP+VT A +
Sbjct: 347 KISITNLPTFLGEDQIQELLNSFGELRNFVLVKDTSTEESRGIAFCEYKDPSVTKTAVES 406
Query: 356 LNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLF 415
LNG+++GD + V+ A+ + Q +++ M+L G
Sbjct: 407 LNGMELGDAAMKVKLASIG-----------IQQVPGEMSVNAMSLM--------AGTQAE 447
Query: 416 GETLAKVLCLTEMM 429
G +VLCL M+
Sbjct: 448 GTEKGRVLCLMNMI 461
>gi|361132025|gb|EHL03640.1| putative Splicing factor U2AF 50 kDa subunit [Glarea lozoyensis
74030]
Length = 568
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 134/270 (49%), Gaps = 42/270 (15%)
Query: 124 LPGAAVPGQLPGVPSAVPE-MAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGL 182
LPGA P Q P PS + MAQ P G+ A L P +R A+R+ V L
Sbjct: 200 LPGA--PRQQPMDPSKLQAIMAQ---PSGSVTNAA--LKPSN------SRQAKRLLVHNL 246
Query: 183 PPLA-NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMAL 241
P + +E+AI FF+ M G N D ++ I+ +K FA +E +T +A+ A+A
Sbjct: 247 PSTSISEEAIINFFNLQMN--GLNIVEGSDPCISAQISKDKSFALLEFKTPSDATLALAF 304
Query: 242 DGIIFEGV-------------AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
DGI + + +RRP DY + P +P G+ S +
Sbjct: 305 DGITMDDSEYVNREANGGDTKGLSIRRPKDYIVPAVSDETPQEP---------GVVSSVV 355
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDP-A 347
+ +++ + +P Y T+ Q+ ELL SFG L F LVKD TG S+G FC Y DP A
Sbjct: 356 --VDTQNKICMSNVPLYLTDEQVIELLTSFGELKAFVLVKDNSTGESRGIAFCEYADPAA 413
Query: 348 VTDIACAALNGLKMGDKTLTVRRATASSGQ 377
TDIA LNG+++GDK L V+RA+ + Q
Sbjct: 414 ATDIAVEGLNGMELGDKHLRVQRASIGNTQ 443
>gi|240279650|gb|EER43155.1| splicing factor u2af large subunit [Ajellomyces capsulatus H143]
gi|325092783|gb|EGC46093.1| splicing factor u2af large subunit [Ajellomyces capsulatus H88]
Length = 572
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 150/322 (46%), Gaps = 49/322 (15%)
Query: 93 RNRSKSLSP---SRSPS-----------KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LP 134
R R +S SP R P+ + +R + +D+ PP + A + G LP
Sbjct: 140 RERKRSASPPPKKREPTPDLTDVVPILERKRRLTQWDIKPPGYEHVTAEQAKLSGMFPLP 199
Query: 135 GVP---SAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAI 191
G P + P Q + T A V+ +R A+R++V LP A E+++
Sbjct: 200 GAPRQQAVDPSRLQAFIHPPTTTSTAPGTSTNTVLKPSNSRQAKRLFVHNLPSSATEESL 259
Query: 192 ATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFE---- 247
FF+ + G N D V ++++K FA +E R + + A+A DGI E
Sbjct: 260 VQFFNLQLN--GLNVIKGVDPCVTAQLSNDKTFALLEFRNAADTTVALAFDGITMEDNDE 317
Query: 248 -----------GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDR 296
+ +RRP DY L +A+ G+P+ G+ S + + P++
Sbjct: 318 MDTTNGDSNGSNQGLSIRRPKDY--ILPSAVE-GEPNQE------GVVSNVV--PDSPNK 366
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+ V +P + E + LL SFG L F LVKD +TG S+G FC Y+DP TDIA L
Sbjct: 367 ICVSNIPPFIEEEPVTMLLVSFGELKSFVLVKDSETGESRGIAFCEYRDPMSTDIAVENL 426
Query: 357 NGLKMGDKTLTVRRATASSGQS 378
NG+++G+K L V RA+ + Q+
Sbjct: 427 NGMELGNKKLKVVRASIGTTQA 448
>gi|453082700|gb|EMF10747.1| hypothetical protein SEPMUDRAFT_48483 [Mycosphaerella populorum
SO2202]
Length = 432
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/334 (29%), Positives = 158/334 (47%), Gaps = 49/334 (14%)
Query: 74 RDKERR-HRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRR-SGFDMAPPA----------- 120
R ER+ R S S + R + L+ S + KRR + +D+ PP
Sbjct: 2 RQLERQIKREASGSPPPKKPREPTPDLTDVVSVLERKRRLTQWDIKPPGYDNVTAEQAKL 61
Query: 121 AAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVG 180
+ M P P Q P P+ + Q + Q + L P + R ++RV V
Sbjct: 62 SGMFPLPGAPRQQPMDPAKL----QAFMNQPGNQASSSALKP------SSARQSKRVMVH 111
Query: 181 GLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA 240
LPP A ++++ FF+ + G N D ++ + +K +A VE +T E+A+NAMA
Sbjct: 112 NLPPSATDESMVDFFNLQLN--GLNITRGVDPCISAQCSKDKTYALVEFKTPEDATNAMA 169
Query: 241 LDGIIFEGVA-------------VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGA 287
LDGI + A ++++RP DY + P N + GL S
Sbjct: 170 LDGITMDHDAMDTSGASNGAPKGLQIKRPRDY-------IVPNVIDETENES--GLLSNT 220
Query: 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
+ + +++ + LP + E QI+ELL SFG L F LV+++ +G S+G FC Y+DP+
Sbjct: 221 VPDTQ--NKISITNLPSFLAEEQIQELLMSFGELKSFVLVRNQSSGESRGIAFCEYKDPS 278
Query: 348 VTDIACAALNGLKMGDKTLTVRRATASSGQSKTE 381
VT +A +LNG+++ D + V+ A+ Q +E
Sbjct: 279 VTKVAVDSLNGMELADTAMRVKLASIGIQQVSSE 312
>gi|70946422|ref|XP_742927.1| U2 snRNP auxiliary factor [Plasmodium chabaudi chabaudi]
gi|56522174|emb|CAH84932.1| U2 snRNP auxiliary factor, putative [Plasmodium chabaudi chabaudi]
Length = 561
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 156/334 (46%), Gaps = 44/334 (13%)
Query: 64 DRTDRHRDYNRDKERRHRHRSR---SHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPA 120
D +D++ + +ER+ R + S S + + +K + P R SK D + A
Sbjct: 88 DNSDKNYSDDSTRERKKNARDKNDISMSEEDSKKENKEIKPKRKKSK---WDTVDESLLA 144
Query: 121 AAMLPGAAVPGQLPGVPSAV-PEMAQNMLPFGAT-QLGAFPLMPVQVMTQQATRHARRVY 178
ML + L GV + N+LP QLG P + + R++Y
Sbjct: 145 NNMLIDS---NNLSGVLQYQRLSLNGNLLPGNKMPQLGRNP------YELEGDKKQRKLY 195
Query: 179 VGGLPPLANEQAIATFFSQVMTAIGGNSA---GPGDA----VVNVYI-NHEKKFAFVEMR 230
+G LPP + ++ I FF+ +++I S+ GD VV I N + +F F+E R
Sbjct: 196 IGNLPPNSKQEEIVEFFNNTLSSIIKGSSLEVKIGDVQLLPVVKCEIFNPDSRFCFLEFR 255
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
T++ ++ LD + + +R+ RP DY P P + P L + + G +
Sbjct: 256 TMDITWLSLKLDSMSYNNYCLRINRPHDYMP-------PPEGDPALTVVFPDIDMGLLES 308
Query: 291 AEGP------------DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
+ P +++++ LP+ + QI +LL FG L GF+++KD +TG +KGY
Sbjct: 309 FKPPKIAPVRSTGDDDNKLYIQNLPHDLKDDQIMDLLGQFGKLKGFNIIKDLNTGLNKGY 368
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
GF Y+D + T +A ALNG G L V++AT
Sbjct: 369 GFFEYEDSSCTQVAIHALNGFVCGKNILNVKKAT 402
>gi|154280004|ref|XP_001540815.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412758|gb|EDN08145.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 571
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 151/324 (46%), Gaps = 54/324 (16%)
Query: 93 RNRSKSLSP---SRSPS-----------KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LP 134
R R +S SP R P+ + +R + +D+ PP + A + G LP
Sbjct: 140 RERKRSASPPPKKREPTPDLTDVVPVLERKRRLTQWDIKPPGYEHVTAEQAKLSGMFPLP 199
Query: 135 GVP---SAVPEMAQNML--PFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQ 189
G P + P Q + P +T G V+ +R A+R++V LP A E+
Sbjct: 200 GAPRQQAVDPSRLQAFIHPPTTSTAPGT---STNTVLKPSNSRQAKRLFVHNLPSSATEE 256
Query: 190 AIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFE-- 247
++ FF+ + G N D V ++++K FA VE R + + A+A DGI E
Sbjct: 257 SLVQFFNLQLN--GLNVIKGVDPCVTAQLSNDKTFALVEFRNAADTTVALAFDGITMEDN 314
Query: 248 -------------GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGP 294
+ +RRP DY L +A+ G+P G+ S + + P
Sbjct: 315 DEMDTTNGNSNGSNQGLSIRRPKDY--ILPSAVE-GEPHQE------GVVSNVV--PDSP 363
Query: 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354
+++ V +P + E + LL SFG L F LVKD +TG S+G FC Y+DP TDIA
Sbjct: 364 NKICVSNIPPFIEEEPVTMLLVSFGELKSFVLVKDSETGESRGIAFCEYRDPMSTDIAVE 423
Query: 355 ALNGLKMGDKTLTVRRATASSGQS 378
LNG+++G+K L V RA+ + Q+
Sbjct: 424 NLNGMELGNKKLKVVRASIGTTQA 447
>gi|124810295|ref|XP_001348830.1| U2 snRNP auxiliary factor, putative [Plasmodium falciparum 3D7]
gi|23497731|gb|AAN37269.1|AE014827_12 U2 snRNP auxiliary factor, putative [Plasmodium falciparum 3D7]
Length = 833
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 115/230 (50%), Gaps = 37/230 (16%)
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSA---GPGDA----VVNVYI-N 219
Q + R++Y+G +PP + ++ + FF+ + A+ +S+ GD V+ I N
Sbjct: 449 QDTDKKQRKLYIGNIPPNSKQEDVVDFFNNSILAVIKDSSLDVKIGDVQLMPVIKCEIFN 508
Query: 220 HEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNP-----------------T 262
+ +F F+E RTV+ + LD I + +R+ RP DY P
Sbjct: 509 SDSRFCFLEFRTVQITWLCLKLDSIPYNNYCLRIGRPHDYIPPPEGDPAFTTVFTDINMD 568
Query: 263 LAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 322
+ L P +P +N+ ++ +R+++ LP+ + QIK+LLE FG L
Sbjct: 569 VFEKLRPSKP---VNVKT---------SSDEENRLYIQNLPHDLKDEQIKDLLEQFGDLK 616
Query: 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
F+++KD +TG +KGYGF Y+D + T +A ALNG G L V++AT
Sbjct: 617 AFNIIKDLNTGLNKGYGFFEYEDSSCTQLAIHALNGFVCGQNILNVKKAT 666
>gi|225562835|gb|EEH11114.1| splicing factor u2af large subunit [Ajellomyces capsulatus G186AR]
Length = 571
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 151/324 (46%), Gaps = 54/324 (16%)
Query: 93 RNRSKSLSP---SRSPS-----------KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LP 134
R R +S SP R P+ + +R + +D+ PP + A + G LP
Sbjct: 140 RERKRSASPPPKKREPTPDLTDVVPILERKRRLTQWDIKPPGYEHVTAEQAKLSGMFPLP 199
Query: 135 GVP---SAVPEMAQNML--PFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQ 189
G P + P Q + P +T G V+ +R A+R++V LP A E+
Sbjct: 200 GAPRQQAVDPSRLQAFIHPPTTSTAPGT---STNTVLKPSNSRQAKRLFVHNLPSSATEE 256
Query: 190 AIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFE-- 247
++ FF+ + G N D V ++++K FA +E R + + A+A DGI E
Sbjct: 257 SLVQFFNLQLN--GLNVIKGVDPCVTAQLSNDKTFALLEFRNAADTTVALAFDGITMEDN 314
Query: 248 -------------GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGP 294
+ +RRP DY L +A+ G+P G+ S + + P
Sbjct: 315 DDMDTTNGDSNGSNQGLSIRRPKDY--ILPSAVE-GEPHQE------GVVSNVV--PDSP 363
Query: 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354
+++ V +P + E + LL SFG L F LVKD +TG S+G FC Y+DP TDIA
Sbjct: 364 NKICVSNIPPFIEEEPVTMLLVSFGELKSFVLVKDSETGESRGIAFCEYRDPMSTDIAVE 423
Query: 355 ALNGLKMGDKTLTVRRATASSGQS 378
LNG+++G+K L V RA+ + Q+
Sbjct: 424 NLNGMELGNKKLKVVRASIGTTQA 447
>gi|164657478|ref|XP_001729865.1| hypothetical protein MGL_2851 [Malassezia globosa CBS 7966]
gi|159103759|gb|EDP42651.1| hypothetical protein MGL_2851 [Malassezia globosa CBS 7966]
Length = 473
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 130/256 (50%), Gaps = 35/256 (13%)
Query: 128 AVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLAN 187
A+PG +P PSA+ E+ T AF RR++V + +
Sbjct: 124 AMPGTIP--PSAMAELE------ATTSAAAF--------NASMYLETRRLHVSPVSSVKT 167
Query: 188 EQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFE 247
Q + F + M S+G + V ++ ++ +A++E R +EASNA+ LDG+ F
Sbjct: 168 SQQLRIFINAKMNERLLCSSGSLEPCYAVDMHLDEGYAYLEFRNPDEASNALLLDGVAFL 227
Query: 248 GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGA--EGPDRVFVGGLPYY 305
G + + RP Y A P+P GAI + +GP+++++G +P +
Sbjct: 228 GHRLHIERPKGYVGQDAV------PAP-----------GAIETSVPDGPNKLYIGNVPVF 270
Query: 306 FTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT 365
E Q+ ELL++FG + FDL++D +T S+G FC + + AVTD+AC L+GL++G++
Sbjct: 271 LNEQQVMELLKAFGDVRHFDLIRDPETQRSRGMAFCEFHEDAVTDLACEGLDGLEVGEQR 330
Query: 366 LTVRRATASSGQSKTE 381
L VRR AS+ E
Sbjct: 331 LMVRRVNASTNTHTHE 346
>gi|296083697|emb|CBI23686.3| unnamed protein product [Vitis vinifera]
Length = 882
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 114/391 (29%), Positives = 171/391 (43%), Gaps = 69/391 (17%)
Query: 25 RSRTGERGRDRHHRDFKSGGDDRRRDKNYKYDREGIRDHDRTDRHRDYNRD-KERRHRHR 83
RSR E+ R HR +G D++ R++N ++ HD RH D KERR
Sbjct: 222 RSRKSEKESKRKHR---TGEDEKNRERN------SMKKHDPGKRHESEFLDRKERRESPP 272
Query: 84 SRSHSSDRFRNRS---------------------------------KSLSPS-RSPSKSK 109
SR SD RNR K+ SP+ RSP K
Sbjct: 273 SRRQHSDADRNRISNNGSSSHFRRHGGSASGLGGYSPRKRRTEAAIKTPSPTNRSPEK-- 330
Query: 110 RRSGFDMAPP-AAAMLPGAAVPGQLP-GVPSAVPEMAQNMLP-------FGATQLGAFPL 160
+ +G+D+ P M G+ + +LP VP AVP A P ++ +
Sbjct: 331 KSAGWDLPPSRTDGMNAGSVLSNELPSAVPVAVPVTATTAKPPLPRIYSDAVSKNKNVSI 390
Query: 161 MPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH 220
+Q+ QATR RR+YV LP ++E+A+ + + + G N ++ I+
Sbjct: 391 DSIQLT--QATRPMRRLYVENLPVSSSEKALMECLNNFLLSSGINHVQGTPPCISCIIHK 448
Query: 221 EKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
EK A VE T E+AS A++ DGI F G +++RRP D+ L A
Sbjct: 449 EKGQALVEFLTPEDASAALSFDGISFSGSILKIRRPKDFVDMTGV---------QEKLVA 499
Query: 281 VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGF 340
A I + P ++F+GG+ + + E+ +FG L + + D G + F
Sbjct: 500 APDAISDI-VKDSPHKIFIGGISRALSSDMLMEIAAAFGPLKAYRFQVNEDLG--EPCAF 556
Query: 341 CVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
Y D +VT ACA LNG+K+G + LTV +A
Sbjct: 557 LEYVDQSVTLKACAGLNGMKLGGQVLTVVQA 587
>gi|255082091|ref|XP_002508264.1| RNA binding protein [Micromonas sp. RCC299]
gi|226523540|gb|ACO69522.1| RNA binding protein [Micromonas sp. RCC299]
Length = 493
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 120/242 (49%), Gaps = 35/242 (14%)
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGN---SAGPGDAVVNVYINHEKKFA 225
Q TR +RR+YVG LP N++A+ FF+ M G S GP +VVN I HEK FA
Sbjct: 112 QHTRQSRRLYVGSLPKPVNDEALHAFFNNAMVNSGAAIDPSGGP--SVVNTTITHEKGFA 169
Query: 226 FVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDY----NPTLAAALGPGQPSPNLNLAAV 281
F+E R +E+A +A+ DGI+F G + ++RP DY NP + A G P + L
Sbjct: 170 FIEFRRLEDAESALMFDGIVFNGSKLIIKRPKDYDAARNP-IWAMRGQAPPQDEVKLIGE 228
Query: 282 GLASGAI--GGAE----------------------GPDRVFVGGLPYYFTETQIKELLES 317
L G I G E GP +++ GG T+ Q++++L+S
Sbjct: 229 ELPIGTIIVDGKEVKIPLPPPLPSEWPRLPRRTPNGPHKMYCGGFHPLHTDLQVRQVLQS 288
Query: 318 FGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQ 377
G L F ++ D + G G+ F Y+DP ++ +A L G+++ ++ L RR +
Sbjct: 289 VGELKSFAVMPD-ENGRPTGHAFFEYKDPRLSAVAETVLTGIRVRNRRLVCRRMNPDAAP 347
Query: 378 SK 379
K
Sbjct: 348 EK 349
>gi|258576333|ref|XP_002542348.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237902614|gb|EEP77015.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 621
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 141/292 (48%), Gaps = 41/292 (14%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P Q + P ++L AF P
Sbjct: 155 RKRRLTQWDIKPPGYENVTAEQAKLSGMFPLPGAPRQ-----QTVDP---SRLQAFMNQP 206
Query: 163 V-----QVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
++ +R A+R++V LPP +E +A FF+ + G N D ++
Sbjct: 207 AGNANSTLLKPSNSRQAKRLFVHNLPPSVSEDTLAQFFNLQLN--GLNVISGVDPCISAQ 264
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFE-----------GVAVRVRRPTDYNPTLAAA 266
++ + KFA +E +T +A+ A+ALDGI E G + ++RP DY A
Sbjct: 265 VSSDGKFALLEFKTASDATVALALDGISLEHDDANGTSSAPGQGLSLKRPKDYIVPSEAD 324
Query: 267 LGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326
Q G+ S + + P+++ V +P + E Q+ LL SFG L F L
Sbjct: 325 DSNRQD---------GVVSNEV--PDSPNKICVTNIPPFIQEEQVTMLLVSFGELKSFVL 373
Query: 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
VKD T S+G FC Y DP+ T+IA LNG+++GDK L V RA+ + Q+
Sbjct: 374 VKDSGTDESRGIAFCEYVDPSSTNIAVEGLNGMELGDKRLKVTRASIGATQA 425
>gi|221059061|ref|XP_002260176.1| U2 snRNP auxiliary factor [Plasmodium knowlesi strain H]
gi|193810249|emb|CAQ41443.1| U2 snRNP auxiliary factor, putative [Plasmodium knowlesi strain H]
Length = 865
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 123/233 (52%), Gaps = 15/233 (6%)
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSA---GPGDAVVNVYI-----NH 220
+ + R++Y+G +PP + ++ + FF+ + +I +S+ GD V+ + N
Sbjct: 489 EGDKKQRKLYIGNIPPNSKQEELIDFFNNTLGSIIKDSSLEIKIGDIVLMPILKCEIFNV 548
Query: 221 EKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDY------NPTLAAALGPGQPSP 274
E +F F+E R++E + LD I F A+R+ RP D+ +P L Q
Sbjct: 549 ESRFCFLEFRSLEITWLCLRLDAITFNNYALRIARPHDFVPPPGGDPALTVVFTDIQHEV 608
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
+ + +A G + +++++ LP+ + QI++LL+ FG L GF+++KD+ TG
Sbjct: 609 FEMVKPIKIAPVRSTG-DDDNKLYIQNLPHDLGDVQIRDLLQQFGKLKGFNVIKDQSTGL 667
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILA 387
+KGYGF Y+D T IA ALNG G L+V++AT Q+ T+ + ++
Sbjct: 668 NKGYGFFEYEDSNCTPIAMHALNGFVCGQNILSVKKATFGKSQNSTQNANTIS 720
>gi|295663747|ref|XP_002792426.1| splicing factor U2AF 50 kDa subunit [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226279096|gb|EEH34662.1| splicing factor U2AF 50 kDa subunit [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 567
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 154/323 (47%), Gaps = 56/323 (17%)
Query: 93 RNRSKSLSP---SRSPS-----------KSKRRSGFDMAPPAAAMLPG--AAVPGQLPGV 136
R+R +S SP R P+ + +R + +D+ PP + A + G P +
Sbjct: 140 RDRKRSASPPPKKREPTPDLTDVVPILERKRRLTQWDIKPPGYEHVTAEQAKLSGMFP-L 198
Query: 137 PSAVPEMAQNMLPFGATQLGAFPLMPV------QVMTQQATRHARRVYVGGLPPLANEQA 190
P A + A + ++L AF PV V+ +R A+R++V +PP A E++
Sbjct: 199 PGAPRQQAVD-----PSRLQAFMNQPVPGISTNTVLRPSNSRQAKRLFVHNIPPSATEES 253
Query: 191 IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250
+ FF+ + G N D V+ ++ ++ F +E ++ +A+ A+A DGI E
Sbjct: 254 LVQFFNLQLN--GLNVIKGVDPCVSAQLSKDRSFGLLEFKSSADATVALAFDGITMEDTG 311
Query: 251 ---------------VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPD 295
+ +RRP DY +G G+ P+ G+ S + + P+
Sbjct: 312 DMDTSNGEANGSNQGLSLRRPKDY----ILPVG-GEEEPHRE----GVVSNVV--PDTPN 360
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++ V +P + E + LL SFG L F LVKD +TG S+G FC Y DP TDIA
Sbjct: 361 KICVSNIPPFIEEEPVTMLLVSFGELKSFVLVKDSETGESRGIAFCEYLDPMSTDIAVEN 420
Query: 356 LNGLKMGDKTLTVRRATASSGQS 378
LNG+++G+K L V RA+ + Q+
Sbjct: 421 LNGMELGNKRLKVVRASIGTIQA 443
>gi|345569109|gb|EGX51978.1| hypothetical protein AOL_s00043g712 [Arthrobotrys oligospora ATCC
24927]
Length = 569
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 37/314 (11%)
Query: 81 RHRSRSHSSDRFRNRSKSLSPSRSPSKSKRR-SGFDMAPPAAAMLPG--AAVPGQLPGVP 137
R RS S + + + L+ S+ KRR + +D+ PP + A + G P +P
Sbjct: 153 RQPRRSPSPPKVKEPTPDLTDIIPVSERKRRLTMWDIKPPGYESVTAEQAKLSGMFP-LP 211
Query: 138 SAVPEMAQNMLPFGATQLGAFPLMPVQ--------VMTQQATRHARRVYVGGLPPLANEQ 189
A + A +++ AF P + + +R A+R+ LPP+ E+
Sbjct: 212 GAPRQTA-----LDPSRMAAFVNHPPKEGSTPQPTALKPSNSRQAKRLLCQNLPPMCTEE 266
Query: 190 AIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249
I +FFS + ++ + + ++ VY+N A +E R+ A+ +A DG+ F+
Sbjct: 267 TIYSFFSSFLKSLNAVDSE-NEPLITVYLNPTGTMAMLEFRSTAYATLCLAFDGMEFDDT 325
Query: 250 AVRVR--RPTDY---NPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPY 304
V++R RP DY + ++ G SPN+ + +++ V +P
Sbjct: 326 EVKIRLSRPKDYIIPQYSESSESHNGDISPNV--------------PDSINKICVSNIPT 371
Query: 305 YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK 364
+ + Q+ ELL++FG L F LVKD++ SKG FC Y DP + +IA LNGL + ++
Sbjct: 372 HLADQQVMELLQTFGPLKSFFLVKDKEMDESKGVAFCEYLDPNIAEIAIEGLNGLDINEQ 431
Query: 365 TLTVRRATASSGQS 378
L V+RA+ QS
Sbjct: 432 LLNVKRASIGVKQS 445
>gi|261196608|ref|XP_002624707.1| splicing factor u2af large subunit [Ajellomyces dermatitidis
SLH14081]
gi|239595952|gb|EEQ78533.1| splicing factor u2af large subunit [Ajellomyces dermatitidis
SLH14081]
gi|239609528|gb|EEQ86515.1| splicing factor u2af large subunit [Ajellomyces dermatitidis ER-3]
gi|327350238|gb|EGE79095.1| splicing factor u2af large subunit [Ajellomyces dermatitidis ATCC
18188]
Length = 570
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 147/327 (44%), Gaps = 60/327 (18%)
Query: 93 RNRSKSLSP---SRSPS-----------KSKRRSGFDMAPPAAAMLPG--AAVPGQLPGV 136
R R +S SP R P+ + +R + +D+ PP + A + G P +
Sbjct: 139 RERKRSASPPPKKREPTPDLTDVVPILERKRRLTQWDIKPPGYEHVTAEQAKLSGMFP-L 197
Query: 137 PSAVPEMAQNMLPFGATQLGAFPLMPVQ----------VMTQQATRHARRVYVGGLPPLA 186
P A + A + ++L AF P V+ +R A+R++V LPP A
Sbjct: 198 PGAPRQQAVD-----PSRLQAFIHPPTTITAPGSSTNTVLKPSNSRQAKRLFVHNLPPSA 252
Query: 187 NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIF 246
E+ + FF+ + G N D ++ ++ +K FA +E R + + A+A DGI
Sbjct: 253 TEERLVQFFNLQLN--GLNVIKGVDPCLSAQLSRDKTFALLEFRNAADTTVALAFDGITM 310
Query: 247 E---------------GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGA 291
E + +RRP DY A P Q G+ S +
Sbjct: 311 EDSGEMDTSNGDVDGPSQGLSIRRPKDYILPSAVEEEPQQE---------GVVSNVV--P 359
Query: 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDI 351
+ P+++ V +P + E + LL SFG L F LVKD +TG S+G FC Y DP T+I
Sbjct: 360 DSPNKICVSNIPPFIEEEPVTMLLVSFGELKSFILVKDSETGESRGIAFCEYLDPTSTEI 419
Query: 352 ACAALNGLKMGDKTLTVRRATASSGQS 378
A LNG+++G+K L V RA+ + Q+
Sbjct: 420 AVENLNGMELGNKRLKVVRASVGTTQA 446
>gi|225677913|gb|EEH16197.1| splicing factor U2AF 65 kDa subunit ) [Paracoccidioides
brasiliensis Pb03]
gi|226287345|gb|EEH42858.1| splicing factor U2AF 50 kDa subunit [Paracoccidioides brasiliensis
Pb18]
Length = 567
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 154/323 (47%), Gaps = 56/323 (17%)
Query: 93 RNRSKSLSP---SRSPS-----------KSKRRSGFDMAPPAAAMLPG--AAVPGQLPGV 136
R+R +S SP R P+ + +R + +D+ PP + A + G P +
Sbjct: 140 RDRKRSASPPPKKREPTPDLTDVVPILERKRRLTQWDIKPPGYEHVTAEQAKLSGMFP-L 198
Query: 137 PSAVPEMAQNMLPFGATQLGAFPLMPV------QVMTQQATRHARRVYVGGLPPLANEQA 190
P A + A + ++L AF PV V+ +R A+R++V +PP A E++
Sbjct: 199 PGAPRQQAVD-----PSRLQAFMNQPVPGTSINTVLRPSNSRQAKRLFVHNIPPSATEES 253
Query: 191 IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250
+ FF+ + G N D V+ ++ ++ F +E ++ +A+ A+A DGI E
Sbjct: 254 LVQFFNLQLN--GLNVIKGVDPCVSAQLSKDRSFGLLEFKSSADATVALAFDGITMEDTG 311
Query: 251 ---------------VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPD 295
+ +RRP DY +G G+ P+ G+ S + + P+
Sbjct: 312 DMDTSNGEANGSNQGLSLRRPKDY----ILPVG-GEEEPHRE----GVVSNVV--PDTPN 360
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++ V +P + E + LL SFG L F LVKD +TG S+G FC Y DP TDIA
Sbjct: 361 KICVSNIPPFIEEEPVTMLLVSFGELKSFVLVKDSETGESRGIAFCEYLDPMSTDIAVEN 420
Query: 356 LNGLKMGDKTLTVRRATASSGQS 378
LNG+++G+K L V RA+ + Q+
Sbjct: 421 LNGMELGNKRLRVVRASIGTIQA 443
>gi|82540696|ref|XP_724646.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23479360|gb|EAA16211.1| splicing factor-like protein, putative [Plasmodium yoelii yoelii]
Length = 714
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 27/224 (12%)
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSA---GPGDA----VVNVYI-NH 220
+ + R++Y+G LPP + ++ I FF+ +++I S+ GD VV I N
Sbjct: 339 EGDKKQRKLYIGNLPPNSKQEEIVEFFNNTISSIIKGSSLEVKIGDVQLLPVVKCEIFNA 398
Query: 221 EKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
+ +F F+E RT++ + LD + + +R+ RP DY P P + P L +
Sbjct: 399 DSRFCFLEFRTMDITWLCLKLDSMSYNNYCLRINRPHDYMP-------PPEGDPALTVVF 451
Query: 281 VGLASGAIGGAEGP------------DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328
+ G + + P +++++ LP+ + QI +LL FG L GF+++K
Sbjct: 452 PDIDMGLLESFKPPKIAPVRSTGDDDNKLYIQNLPHDLKDDQIMDLLGQFGKLKGFNIIK 511
Query: 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
D +TG +KGYGF Y+D + T +A ALNG G L V++AT
Sbjct: 512 DLNTGLNKGYGFFEYEDSSCTQVAIHALNGFVCGKNILNVKKAT 555
>gi|68068227|ref|XP_676023.1| U2 snRNP auxiliary factor [Plasmodium berghei strain ANKA]
gi|56495523|emb|CAI00540.1| U2 snRNP auxiliary factor, putative [Plasmodium berghei]
Length = 630
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 27/224 (12%)
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSA---GPGDA----VVNVYI-NH 220
+ + R++Y+G LPP + ++ I FF+ +++I S+ GD VV I N
Sbjct: 255 EGDKKQRKLYIGNLPPNSKQEEIVEFFNNTISSIIKGSSLEVKIGDVQLLPVVKCEIFNA 314
Query: 221 EKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
+ +F F+E RT++ + LD + + +R+ RP DY P P + P L +
Sbjct: 315 DSRFCFLEFRTMDITWLCLKLDSMSYNNYCLRINRPHDYMP-------PPEGDPALTVVF 367
Query: 281 VGLASGAIGGAEGP------------DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328
+ G + + P +++++ LP+ + QI +LL FG L GF+++K
Sbjct: 368 PDIDMGLLESFKPPKIAPVRSTGDDDNKLYIQNLPHDLKDDQIMDLLGQFGKLKGFNIIK 427
Query: 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
D +TG +KGYGF Y+D + T +A ALNG G L V++AT
Sbjct: 428 DLNTGLNKGYGFFEYEDSSCTQVAIHALNGFVCGKNILNVKKAT 471
>gi|167395950|ref|XP_001741817.1| hexokinase [Entamoeba dispar SAW760]
gi|165893477|gb|EDR21726.1| hexokinase, putative [Entamoeba dispar SAW760]
Length = 974
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/323 (27%), Positives = 143/323 (44%), Gaps = 79/323 (24%)
Query: 57 REGIRDHDRTDRHRDYNRDKERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRSGFDM 116
RE R DR DRHR R E H +R+ +DR SPS SP K S +D
Sbjct: 289 REYSRSEDREDRHR---RVAEEEHYNRNIRRRADR--------SPSLSPLGDKLHSRWDE 337
Query: 117 APPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARR 176
P A + Q+ Q + R A+R
Sbjct: 338 QPKA-----------------------------IDSVQIS-------QQLNVHQERAAKR 361
Query: 177 VYVGGLPPLANEQAIATFFSQVM---TAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVE 233
+YVG + +E+ I F++ M + N P D + ++ +N+E+ +AF+E RT+E
Sbjct: 362 IYVGNINSSTSEKDIVDAFNEAMRRGDYVDKND--PRDIITHIEVNYERSYAFLEFRTLE 419
Query: 234 EASNAMALDGIIFEGVAVRVRRPTDYNPT------LAAALGPGQPSPNLNLAAVGLASGA 287
EA A++LDG+ +G +V+VRRP DYNP L+ + PG +P ++
Sbjct: 420 EAVKALSLDGLTIKGASVKVRRPKDYNPVLPFISGLSQLMEPGTTNPRESI--------- 470
Query: 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV--YQD 345
+++G +P T+ QI++ LE+ L F +++D D G +G +C+ YQ+
Sbjct: 471 ---------LYMGNIPLQMTDEQIRKKLENLNPLKKFFVIRDPDLGAPQGKCYCLFEYQN 521
Query: 346 PAVTDIACAALNGLKMGDKTLTV 368
P + +G+ +G + V
Sbjct: 522 PEYKE-KILTFDGINLGGNKIEV 543
>gi|76154831|gb|AAX26240.2| SJCHGC03157 protein [Schistosoma japonicum]
Length = 258
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 101/184 (54%), Gaps = 18/184 (9%)
Query: 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTET 309
A++ RRP + P L S ++ G+ S + + P ++FVGGLPYY E
Sbjct: 3 ALKFRRPRVFAPLLGV-------SEQQSVIVPGVVSTVV--QDSPHKIFVGGLPYYLNED 53
Query: 310 QIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369
Q+KELL SFG L GF+LVKD TG SKGY FC Y D VTD ACA LNG+++GDK L V+
Sbjct: 54 QVKELLLSFGPLKGFNLVKDGSTGLSKGYAFCEYVDSNVTDHACAGLNGMQLGDKKLIVQ 113
Query: 370 RATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLF--GETLAKVLCLTE 427
RA+ + + L Q +++ A+Q NT G G G +VLCL
Sbjct: 114 RASVGAKHTTGVLPQCLLQMS---GLEEGAVQ----NTTGSGNLTVRSGGPPTEVLCLMN 166
Query: 428 MMKS 431
M+++
Sbjct: 167 MIET 170
>gi|67541022|ref|XP_664285.1| hypothetical protein AN6681.2 [Aspergillus nidulans FGSC A4]
gi|40738434|gb|EAA57624.1| hypothetical protein AN6681.2 [Aspergillus nidulans FGSC A4]
Length = 624
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 109/218 (50%), Gaps = 24/218 (11%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
+R A+R++V LPP A + + +FF+ + G N D ++ I+ + FA +E +
Sbjct: 220 SRQAKRLFVYNLPPNATVENLVSFFNLQLN--GLNVIQSVDPCISAQISDDHSFALLEFK 277
Query: 231 TVEEASNAMALDGIIF--------EGVA--VRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
+ + + A+ALDGI G A + VRRP DY PNL
Sbjct: 278 SPNDTTVALALDGITMGEHESNGENGAAKGLEVRRPKDYI------------VPNLAEQD 325
Query: 281 VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGF 340
+ ASG + P+++ V +P Y E + LL+SFG L F LVKD T S+G F
Sbjct: 326 LEGASGMKDVPDSPNKICVSNIPQYIPEEPVTMLLKSFGELKSFVLVKDSSTEESRGIAF 385
Query: 341 CVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
C Y DP T IA LNG+++GD+ L V RA+ Q+
Sbjct: 386 CEYADPNTTTIAVQGLNGMELGDRHLKVVRASIGMTQA 423
>gi|398403643|ref|XP_003853288.1| hypothetical protein MYCGRDRAFT_100024 [Zymoseptoria tritici
IPO323]
gi|339473170|gb|EGP88264.1| hypothetical protein MYCGRDRAFT_100024 [Zymoseptoria tritici
IPO323]
Length = 544
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 163/375 (43%), Gaps = 79/375 (21%)
Query: 93 RNRSKSLSPSRSP--------------SKSKRRSGFDMAPPAAAMLPG--AAVPGQ--LP 134
+++ KS SP R P K +R + +D+ PP + A + G LP
Sbjct: 120 QSKRKSASPPRKPKEPTPDLTDIVPILEKPRRMTQWDVKPPGYENVTAEQAKLSGMFPLP 179
Query: 135 GVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATF 194
G P VP M N L Q G+ + + R ++R+ V LP A + ++ F
Sbjct: 180 GAPR-VPAMDANRLKEFMAQPGS--QANTSALKPSSARQSKRLLVYNLPASATDDSLMDF 236
Query: 195 FSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG------ 248
F+ + G N D ++ I+ +A +E +T E+A+NAMA+DGI E
Sbjct: 237 FNLQLN--GLNVTKGADPCISANISQGNGYALLEFKTPEDATNAMAMDGIKMEADVDMGN 294
Query: 249 -------VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGG 301
+ ++RP DY + P N + GL S + + +++ +
Sbjct: 295 GESNGTSKGLEIKRPKDY-------IVPTVSDETENTS--GLFSSIVPDTQ--NKISITN 343
Query: 302 LPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDP-AVTDIACAALNGLK 360
+P Y E Q+ ELL SFG L F LVKD+ T S+G F Y+DP + T IA ALNG+
Sbjct: 344 IPVYLQEEQVVELLTSFGQLKNFVLVKDKSTEESRGIAFVEYKDPDSTTKIALEALNGMD 403
Query: 361 MGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLA 420
+GD L V+ A+ I IQ Q SG T+ G M L T +
Sbjct: 404 LGDAALKVKLAS--------------------IGIQ----QVSGEMTV-GAMGLIAGTKS 438
Query: 421 ------KVLCLTEMM 429
+VLCL M+
Sbjct: 439 TDADNGRVLCLMNMI 453
>gi|259480265|tpe|CBF71237.1| TPA: splicing factor u2af large subunit (AFU_orthologue;
AFUA_7G05310) [Aspergillus nidulans FGSC A4]
Length = 547
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 109/218 (50%), Gaps = 24/218 (11%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
+R A+R++V LPP A + + +FF+ + G N D ++ I+ + FA +E +
Sbjct: 220 SRQAKRLFVYNLPPNATVENLVSFFNLQLN--GLNVIQSVDPCISAQISDDHSFALLEFK 277
Query: 231 TVEEASNAMALDGIIF--------EGVA--VRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
+ + + A+ALDGI G A + VRRP DY PNL
Sbjct: 278 SPNDTTVALALDGITMGEHESNGENGAAKGLEVRRPKDYI------------VPNLAEQD 325
Query: 281 VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGF 340
+ ASG + P+++ V +P Y E + LL+SFG L F LVKD T S+G F
Sbjct: 326 LEGASGMKDVPDSPNKICVSNIPQYIPEEPVTMLLKSFGELKSFVLVKDSSTEESRGIAF 385
Query: 341 CVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
C Y DP T IA LNG+++GD+ L V RA+ Q+
Sbjct: 386 CEYADPNTTTIAVQGLNGMELGDRHLKVVRASIGMTQA 423
>gi|156099808|ref|XP_001615700.1| U2 snRNP auxiliary factor [Plasmodium vivax Sal-1]
gi|148804574|gb|EDL45973.1| U2 snRNP auxiliary factor, putative [Plasmodium vivax]
Length = 914
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 119/233 (51%), Gaps = 15/233 (6%)
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSA---GPGDAVV-----NVYINH 220
+ + R++Y+G +PP + ++ + FF+ + +I +S+ GD V+ N
Sbjct: 538 EGDKKQRKLYIGNIPPNSKQEELIDFFNNTLASIIKDSSLEIKIGDIVLLPILKCEIFNV 597
Query: 221 EKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDY------NPTLAAALGPGQPSP 274
E +F F+E R++E + LD I F +R+ RP D+ +P L
Sbjct: 598 ESRFCFLEFRSLEITWLCLRLDAISFNNYCLRIARPHDFVPPPGGDPALTVVFTDINHEV 657
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
+ V +A G + +++++ LP+ + QI++LL+ FG L GF+++KD +TG
Sbjct: 658 FEMVKPVKIAPVRSTG-DDDNKLYIQNLPHDLRDDQIRDLLQQFGKLKGFNIIKDLNTGL 716
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILA 387
+KGYGF Y+D T IA ALNG G L V++AT Q+ T+ + ++
Sbjct: 717 NKGYGFFEYEDSNCTPIAMHALNGFVCGQNILNVKKATFGKSQNSTQNANTIS 769
>gi|367020820|ref|XP_003659695.1| hypothetical protein MYCTH_2297048 [Myceliophthora thermophila ATCC
42464]
gi|347006962|gb|AEO54450.1| hypothetical protein MYCTH_2297048 [Myceliophthora thermophila ATCC
42464]
Length = 567
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 157/345 (45%), Gaps = 60/345 (17%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P Q M P T+L AF P
Sbjct: 170 RKRRLTQWDIKPPGYDNVTAEQAKLSGMFPLPGAPRQ-----QAMDP---TKLQAFMNHP 221
Query: 163 VQVMTQQA-----TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
+ A +R ++R+ V LPP A E+++ FF+ + G N D + +
Sbjct: 222 GGAVNSAALKPTNSRQSKRLIVSNLPPSATEESLVNFFNLQLN--GLNVIETADPCLQAH 279
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFEGVA-------------VRVRRPTDYNPTLA 264
I ++ FA +E R +A+ A+ALDGI E + +RRP DY +
Sbjct: 280 IAPDRSFAMLEFRHNTDATVALALDGITMEAEDADAANGNGAATQGLHLRRPKDY--IVP 337
Query: 265 AALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324
A + PN + + +S + + P+++ V LP Y T+ Q+ ELL SFG L F
Sbjct: 338 AVVE----DPNYDPDSDTPSSVVL---DSPNKISVTNLPLYLTDDQVMELLVSFGKLKSF 390
Query: 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQES 384
LVKD T S+G F Y DP+ T++A LN + +G++ L V++A+
Sbjct: 391 VLVKDNGTQESRGIAFLEYADPSATNVAVQGLNNMMLGERALKVQKASIG---------- 440
Query: 385 ILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ Q + + M++ M+ GG ++VL L M+
Sbjct: 441 -ITQVSGEMGVNAMSMLAGTMSADAGG--------SRVLQLLNMV 476
>gi|384500209|gb|EIE90700.1| hypothetical protein RO3G_15411 [Rhizopus delemar RA 99-880]
Length = 490
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 89/150 (59%), Gaps = 14/150 (9%)
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEM 229
AT+ ARR+YVG +PP E+ +A FF+ M + P V V INHEK +AFVE
Sbjct: 214 ATKQARRLYVGQIPPGLEEKPLADFFNATMHQLQMQDRTP---VAAVQINHEKSYAFVEF 270
Query: 230 RTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIG 289
+T E+A+ MA DGI+F+G +++RRP DY P ++++ GL S +
Sbjct: 271 QTAEQATACMAFDGIMFQGQQLKIRRPKDYQPPAEG---------DVSMQLPGLVSTNV- 320
Query: 290 GAEGPDRVFVGGLPYYFTETQIKELLESFG 319
+ P+++F+GGLP Y + Q+ ELL+SFG
Sbjct: 321 -PDTPNKIFIGGLPVYLNDDQVIELLKSFG 349
>gi|221483471|gb|EEE21790.1| U2 snRNP auxiliary factor, putative [Toxoplasma gondii GT1]
gi|221507941|gb|EEE33528.1| U2 snRNP splicing factor, putative [Toxoplasma gondii VEG]
Length = 553
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 26/224 (11%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNS-------AGPGDAVVNV----YINH 220
R +R+YVG LPP + + + FF+ + A+ + A G+ ++ V N
Sbjct: 185 RKQKRLYVGNLPPGSTQPDVVGFFNGALLAVNAQTGFVKEDEATAGEQLLPVERCEVFNE 244
Query: 221 EKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
+F F+E+R + A + LDGI + G ++RV RP DY P G P+ +
Sbjct: 245 SSRFCFIELRNEQYAILCVKLDGITYNGYSLRVGRPHDYVPPPG-----GDPAHQAYIPL 299
Query: 281 VGLASGAIGGAE---------GPD-RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330
+ A + GPD ++++ LP E Q+++LLE FGTL +L+++
Sbjct: 300 LDDAKKVKREEKREKPSRPETGPDNKIYIQNLPPEMGEEQVRDLLEQFGTLRVLNLIRNV 359
Query: 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374
TG KGYGF Y+DP VTD A ALNG G L+V+RA S
Sbjct: 360 QTGQHKGYGFFEYEDPEVTDQAILALNGFVCGANMLSVQRANFS 403
>gi|237839189|ref|XP_002368892.1| U2 snRNP auxiliary factor or splicing factor, putative [Toxoplasma
gondii ME49]
gi|211966556|gb|EEB01752.1| U2 snRNP auxiliary factor or splicing factor, putative [Toxoplasma
gondii ME49]
Length = 553
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 112/224 (50%), Gaps = 26/224 (11%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNS-------AGPGDAVVNV----YINH 220
R +R+YVG LPP + + + FF+ + A+ + A G+ ++ V N
Sbjct: 185 RKQKRLYVGNLPPGSTQPDVVGFFNGALLAVNAQTGFVKEDEATAGEQLLPVERCEVFNE 244
Query: 221 EKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
+F F+E+R + A + LDGI + G ++RV RP DY P G P+ +
Sbjct: 245 SSRFCFIELRNEQYAILCVKLDGITYNGYSLRVGRPHDYVPPPG-----GDPAHQAYIPL 299
Query: 281 VGLASGAIGGAE---------GP-DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330
+ A + GP +++++ LP E Q+++LLE FGTL +L+++
Sbjct: 300 LDDAKKVKREEKREKPSRPETGPNNKIYIQNLPPEMGEEQVRDLLEQFGTLRVLNLIRNV 359
Query: 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374
TG KGYGF Y+DP VTD A ALNG G L+V+RA S
Sbjct: 360 QTGQHKGYGFFEYEDPEVTDQAILALNGFVCGANMLSVQRANFS 403
>gi|341038664|gb|EGS23656.1| hypothetical protein CTHT_0003520 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 584
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 131/273 (47%), Gaps = 45/273 (16%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
+R A+R+ V LPP A E+++ FF+ + G N D + +I ++ FA +E R
Sbjct: 252 SRQAKRLVVRNLPPSATEESLVNFFNLQLN--GLNVIETTDPCLQAHIAPDRSFAMLEFR 309
Query: 231 TVEEASNAMALDGIIF----------EGV--AVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
EA+ A+A DGI E V +++ RP DY + A + PN +
Sbjct: 310 NSSEATVALAFDGISMDADDAGANGAEAVHGGLQITRPKDY--IVPAVVE----DPNYDP 363
Query: 279 AAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
+ +S I + P+++ V +P Y E Q+ ELL SFG L F LVKD T S+G
Sbjct: 364 DSDVPSSVVI---DSPNKISVANIPPYLNEDQVMELLVSFGKLKSFVLVKDNGTQESRGI 420
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKM 398
F Y DP+V+++A LN + +G++ L V++A+ I I ++
Sbjct: 421 AFLEYVDPSVSNVAIQGLNDMPLGEQKLKVKKAS--------------------IGITQV 460
Query: 399 A--LQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
A + + M+ L G S E ++VL L M+
Sbjct: 461 AGEMSVNAMSMLAGTTSTHAEASSRVLQLLNMV 493
>gi|320031290|gb|EFW13263.1| splicing factor u2af large subunit [Coccidioides posadasii str.
Silveira]
Length = 545
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 140/290 (48%), Gaps = 37/290 (12%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMP-- 162
+ +R + +D+ PP + A + G P +P A + A + ++L AF P
Sbjct: 151 RKRRLTQWDIKPPGYENVTAEQAKLSGMFP-LPGAPRQQAVD-----PSRLQAFMNQPGG 204
Query: 163 ---VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN 219
++ +R A+R++V L P +E +IA FF+ + G N D V+ ++
Sbjct: 205 NASNTLLKPSNSRQAKRLFVYNLSPSLSEDSIAQFFNLQLN--GLNVVSGVDPCVSAQLS 262
Query: 220 HEKKFAFVEMRTVEEASNAMALDGIIFE-----------GVAVRVRRPTDYNPTLAAALG 268
+ FA +E +T +A+ A+A DG+ E + +RRP DY +
Sbjct: 263 TDGTFALLEFKTAADATVALAFDGVSMEPDDANGHTNGSSQGLSIRRPKDY-------IV 315
Query: 269 PGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328
P + + G+ S + + P+++ V +P + E Q+ LL SFG L F LVK
Sbjct: 316 PSETDDSNRQE--GVVSNEV--PDSPNKICVTNIPPFIQEEQVTMLLVSFGELKSFILVK 371
Query: 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
D T S+G FC Y DP+ T+IA LNG+++GDK L V RA+ + Q+
Sbjct: 372 DSGTDESRGIAFCEYVDPSSTNIAVEGLNGMELGDKRLKVTRASIGATQA 421
>gi|119189253|ref|XP_001245233.1| hypothetical protein CIMG_04674 [Coccidioides immitis RS]
gi|392868136|gb|EAS33879.2| U2 snRNP auxilliary factor, large subunit, splicing factor
[Coccidioides immitis RS]
Length = 545
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 140/290 (48%), Gaps = 37/290 (12%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMP-- 162
+ +R + +D+ PP + A + G P +P A + A + ++L AF P
Sbjct: 151 RKRRLTQWDIKPPGYENVTAEQAKLSGMFP-LPGAPRQQAVD-----PSRLQAFMNQPGG 204
Query: 163 ---VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN 219
++ +R A+R++V L P +E +IA FF+ + G N D V+ ++
Sbjct: 205 NASNTLLKPSNSRQAKRLFVYNLSPSLSEDSIAQFFNLQLN--GLNVVSGVDPCVSAQLS 262
Query: 220 HEKKFAFVEMRTVEEASNAMALDGIIFE-----------GVAVRVRRPTDYNPTLAAALG 268
+ FA +E +T +A+ A+A DG+ E + +RRP DY +
Sbjct: 263 TDGTFALLEFKTAADATVALAFDGVSMEPDDANGHTNGSSQGLSIRRPKDY-------IV 315
Query: 269 PGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328
P + + G+ S + + P+++ V +P + E Q+ LL SFG L F LVK
Sbjct: 316 PSETDDSNRQE--GVVSNEV--PDSPNKICVTNIPPFIQEEQVTMLLVSFGELKSFVLVK 371
Query: 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
D T S+G FC Y DP+ T+IA LNG+++GDK L V RA+ + Q+
Sbjct: 372 DSGTDESRGIAFCEYVDPSSTNIAVEGLNGMELGDKRLKVTRASIGATQA 421
>gi|449299113|gb|EMC95127.1| hypothetical protein BAUCODRAFT_526859 [Baudoinia compniacensis
UAMH 10762]
Length = 432
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 99/349 (28%), Positives = 157/349 (44%), Gaps = 68/349 (19%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P P ++L AF P
Sbjct: 35 RKRRLTQWDIKPPGYENVTAEQAKLSGMFPLPGAP--------RQQPMDPSRLQAFMNQP 86
Query: 163 -----VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
+ R ++R++ +PP NE I+ FF+ + G N D ++
Sbjct: 87 GNQANTSALKPSTARQSKRLFAYNIPPNVNESMISDFFNLQLN--GLNVTRGVDPCISAQ 144
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGI-------IFEGVA------VRVRRPTDYNPTLA 264
++ + +A ++ +T E+A+NAMALDGI + G A + ++RP DY +
Sbjct: 145 LSQDLTYALLDFKTSEDATNAMALDGITMPEHMEVMNGSANGNSQGLIIQRPKDY--IVP 202
Query: 265 AALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVF---VGGLPYYFTETQIKELLESFGTL 321
A + + G+ S + PD F + +P Y TE Q++ELL SFG L
Sbjct: 203 AVVDDTE-------HEAGVLSSTV-----PDTQFKISITHIPSYLTEEQVQELLVSFGEL 250
Query: 322 HGFDLVKDRDTGNSKGYGFCVYQDPA-VTDIACAALNGLKMGDKTLTVRRATASSGQSKT 380
F LVKD T S+G FC Y+D TDIA +LNG+++GD L V+RA+ + Q
Sbjct: 251 KNFVLVKDAGTDQSRGIAFCEYKDAKNTTDIAVESLNGMELGDSHLKVQRASIGTQQVGG 310
Query: 381 EQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
E + + M++ S GG ++VLCL M+
Sbjct: 311 E-----------MTVNAMSMMASA----AGGAD---RDASRVLCLMNMI 341
>gi|171684585|ref|XP_001907234.1| hypothetical protein [Podospora anserina S mat+]
gi|170942253|emb|CAP67905.1| unnamed protein product [Podospora anserina S mat+]
Length = 585
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 144/306 (47%), Gaps = 44/306 (14%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P Q M P T+L AF P
Sbjct: 189 RRRRLTQWDIKPPGYDNVTAEQAKLSGMFPLPGAPRQ-----QAMDP---TKLQAFMSQP 240
Query: 163 VQVMTQQA-----TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
+ A +R A+R+ + +P A + +I FF+ + G N D +
Sbjct: 241 GGAVNSAALKPTNSRQAKRLILSNIPASATDDSIVNFFNLQLN--GLNVIEQTDPCLLCN 298
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFEG------------VAVRVRRPTDYNPTLAA 265
I+ ++ FA +E R +A+ A+ALDGI + +++RRP DY + A
Sbjct: 299 ISPDRSFAMLEFRNNTDATVALALDGITMDADDHQANGNGAAATGLKIRRPKDY--IVPA 356
Query: 266 ALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFD 325
+ P+ ++ + + +GP+++ V +P Y TE Q+ ELL SFG L F
Sbjct: 357 IVEDPNYDPDSSVPSTNVV-------DGPNKISVTNIPPYLTEDQVMELLVSFGKLKSFV 409
Query: 326 LVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA----TASSGQSKTE 381
VKD T +G F Y D +VTD+A + LN + +G+K L V++A T +G+
Sbjct: 410 FVKDNGTQEPRGIAFLEYADSSVTDVAISGLNNMMLGEKALKVQKASIGITQVAGELSVN 469
Query: 382 QESILA 387
S+LA
Sbjct: 470 AMSMLA 475
>gi|255931767|ref|XP_002557440.1| Pc12g05960 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582059|emb|CAP80223.1| Pc12g05960 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 554
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 131/287 (45%), Gaps = 37/287 (12%)
Query: 106 SKSKRRSGFDMAPPA-----------AAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
++ +R + +DM PP + M P P Q P PS + + P G ++
Sbjct: 173 TRKRRLTQWDMKPPGYENVTAEQAKISGMFPLPGAPRQQPMDPSRMKDFLNP--PTGDSE 230
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
A + +R ++R++V +PP + A+ FF+ + G N D +
Sbjct: 231 NAA--------LKPSNSRQSKRLFVYNIPPGVSGDAVIAFFNLQLN--GLNVIRSVDPCI 280
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFE---GVAVRVRRPTDYNPTLAAALGPGQ 271
+ ++ +K FA +E + +A+ A+ALDGI + VRRP DY +A P Q
Sbjct: 281 SAQVSEDKTFALLEFKDPNDATVALALDGITMPESGDKGLEVRRPKDYIVPDGSAAQPVQ 340
Query: 272 PSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD 331
P LN + P+++ + +P Y E I LL+SFG L F LVKD
Sbjct: 341 PGVVLNEVP-----------DSPNKICISNIPTYINEEAIIMLLKSFGDLKSFILVKDAA 389
Query: 332 TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
T S+G F Y DP T +A LNG+++ D+ L RA+ + Q+
Sbjct: 390 TEESRGIAFYEYVDPNNTALAVEGLNGMELADRRLKFVRASIGTTQA 436
>gi|440290938|gb|ELP84237.1| splicing factor u2af large subunit, putative [Entamoeba invadens
IP1]
Length = 623
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 135/307 (43%), Gaps = 49/307 (15%)
Query: 74 RDKERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPAAAMLPGAAVPGQL 133
RD RHR R SH +R R+R S P R + RS PP A P
Sbjct: 38 RDYHERHRDRYESHYDNRPRDRYDS--PKRRYYDKEDRS-----PPRHDERRKARSPS-- 88
Query: 134 PGVPSAVPEMAQNMLPFGATQLGAFPLMPV---QVMTQQATRH----ARRVYVGGLPPLA 186
+ P G + PV ++ QQ H +RRVYVG +
Sbjct: 89 -------------LSPLGKKIKSRWDEQPVADASLLQQQLNVHQEKGSRRVYVGNINTTT 135
Query: 187 NEQAIATFFSQVM---TAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDG 243
EQ I F+ M + N D +V+ +N+EK +AF+E RT ++A A++LDG
Sbjct: 136 TEQDIVEAFNDAMRRGDYVDKNDKS--DIIVSTEVNYEKSYAFIEFRTFDQAVKALSLDG 193
Query: 244 IIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLP 303
+ +G +V+VRRP D+NP L Q L VG G +++G +P
Sbjct: 194 LTIKGASVKVRRPKDFNPVLPFISSLSQ------LMEVGTTKPRDGV------MYMGNIP 241
Query: 304 YYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV--YQDPAVTDIACAALNGLKM 361
++ QI++ LE+ L + +V+D G +G +C+ YQ+P D A NG+ +
Sbjct: 242 LQMSDEQIQKKLENLNPLKKYVVVRDPSLGAPQGKCYCLFEYQNPEYKD-KVLAFNGIIL 300
Query: 362 GDKTLTV 368
G + V
Sbjct: 301 GGDKIEV 307
>gi|303323229|ref|XP_003071606.1| splicing factor, putative [Coccidioides posadasii C735 delta SOWgp]
gi|240111308|gb|EER29461.1| splicing factor, putative [Coccidioides posadasii C735 delta SOWgp]
Length = 545
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 139/290 (47%), Gaps = 37/290 (12%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMP-- 162
+ +R + +D+ PP + A + G P +P A + A + ++L AF P
Sbjct: 151 RKRRLTQWDIKPPGYENVTAEQAKLSGMFP-LPGAPRQQAVD-----PSRLQAFMNQPGG 204
Query: 163 ---VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN 219
++ +R A+R++V L P +E +IA FF+ + G N D V+ ++
Sbjct: 205 NASNTLLKPSNSRQAKRLFVYNLSPSLSEDSIAQFFNLQLN--GLNVVSGVDPCVSAQLS 262
Query: 220 HEKKFAFVEMRTVEEASNAMALDGIIFE-----------GVAVRVRRPTDYNPTLAAALG 268
+ FA +E +T +A+ A+A DG+ E + +RRP DY +
Sbjct: 263 TDGTFALLEFKTAADATVALAFDGVSMEPDDANGHTNGSSQGLSIRRPKDY-------IV 315
Query: 269 PGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328
P + + G+ S + + P ++ V +P + E Q+ LL SFG L F LVK
Sbjct: 316 PSETDDSNRQE--GVVSNEV--PDSPSKICVTNIPPFIQEEQVTMLLVSFGELKSFILVK 371
Query: 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
D T S+G FC Y DP+ T+IA LNG+++GDK L V RA+ + Q+
Sbjct: 372 DSGTDESRGIAFCEYVDPSSTNIAVEGLNGMELGDKRLKVTRASIGATQA 421
>gi|119482894|ref|XP_001261475.1| splicing factor u2af large subunit [Neosartorya fischeri NRRL 181]
gi|119409630|gb|EAW19578.1| splicing factor u2af large subunit [Neosartorya fischeri NRRL 181]
Length = 563
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 132/295 (44%), Gaps = 43/295 (14%)
Query: 106 SKSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLM 161
++ +R + +D+ PP + A + G LPG P P ++L AF
Sbjct: 166 TRKRRLTQWDIKPPGYENVTAEQAKLSGMFPLPGAP--------RQQPMDPSRLQAFMNQ 217
Query: 162 P------VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVN 215
P + +R ARR++V LP + + + + +FF+ + G N D ++
Sbjct: 218 PGGGSADNSALKPSNSRQARRLFVYNLPSVVSSEHLVSFFNLQLN--GLNVIHSVDPCIS 275
Query: 216 VYINHEKKFAFVEMRTVEEASNAMALDGIIFEG------------VAVRVRRPTDYNPTL 263
I+ + FA +E +T + + A+A DGI E + VRRP DY
Sbjct: 276 AQISEDHSFALLEFKTPNDTTVALAFDGITMEEHEPASGTENGAPKGLEVRRPKDYIVPN 335
Query: 264 AAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHG 323
+A Q LN + P+++ V +P Y E + LL+SFG L
Sbjct: 336 GSADQEYQEGVLLNEVP-----------DSPNKICVSNIPQYIPEEPVTMLLKSFGELKS 384
Query: 324 FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
F LVKD T S+G FC Y DP+ T IA LNG+++GD+ L V RA+ Q+
Sbjct: 385 FVLVKDSSTEESRGIAFCEYADPSATAIAVEGLNGMELGDRHLKVVRASIGMTQA 439
>gi|116192501|ref|XP_001222063.1| hypothetical protein CHGG_05968 [Chaetomium globosum CBS 148.51]
gi|88181881|gb|EAQ89349.1| hypothetical protein CHGG_05968 [Chaetomium globosum CBS 148.51]
Length = 566
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 95/307 (30%), Positives = 145/307 (47%), Gaps = 45/307 (14%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P Q M P T+L AF P
Sbjct: 169 RRRRLTQWDIKPPGYDNVTAEQAKLSGMFPLPGAPRQ-----QAMDP---TKLQAFMNQP 220
Query: 163 VQVMTQQA-----TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
+ A +R ++R+ + LP ++++ FF+ + G N D + +
Sbjct: 221 GGAVNSAALKPSNSRQSKRLIISNLPASVTDESLTNFFNLQLN--GLNVIETADPCLQAH 278
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFE----------GVA---VRVRRPTDYNPTLA 264
I E+ FA VE R +A+ A+ALDGI E G A + +RRP DY +
Sbjct: 279 IAAERAFAMVEFRNNTDATVALALDGISMEADDAHAANGNGTAPQGLHIRRPKDY--IVP 336
Query: 265 AALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324
A + PN + + +S + + P+++ V LP Y TE Q+ ELL SFG L F
Sbjct: 337 AVV----EDPNYDPDSDRPSSVVV---DSPNKISVTNLPLYLTEDQVMELLVSFGKLKSF 389
Query: 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA----TASSGQSKT 380
LVKD T S+G F Y DP VT +A L+ + +G++ L V++A T SG+
Sbjct: 390 VLVKDNGTEESRGIAFLEYADPGVTTVAIQGLHNMMLGERALKVQKASIGITQVSGEMGV 449
Query: 381 EQESILA 387
S+LA
Sbjct: 450 NAMSMLA 456
>gi|121711505|ref|XP_001273368.1| splicing factor u2af large subunit [Aspergillus clavatus NRRL 1]
gi|119401519|gb|EAW11942.1| splicing factor u2af large subunit [Aspergillus clavatus NRRL 1]
Length = 583
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 130/297 (43%), Gaps = 46/297 (15%)
Query: 106 SKSKRRSGFDMAPPA-----------AAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
++ +R + +D+ PP + M P P Q P PS + P G +
Sbjct: 167 TRKRRLTQWDIKPPGYENVTAEQAKLSGMFPLPGAPRQQPMDPSRLQAFMNQ--PGGGSA 224
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
A + +R A+R++V LPP + + + +FF+ + G N D +
Sbjct: 225 DNA-------ALKPSNSRQAKRLFVYNLPPGVSNEHLVSFFNLQLN--GLNVIHNVDPCI 275
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFE-------------GVAVRVRRPTDYNP 261
+ I+ + FA +E ++ + + A+A DGI E + VRRP DY
Sbjct: 276 SAQISEDHTFALLEFKSPNDTTVALAFDGITMEEHEAMGAGAENGASKGLEVRRPKDYVV 335
Query: 262 TLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTL 321
+A Q LN + P+++ V +P Y E + LL+SFG L
Sbjct: 336 PNGSADQEYQEGVLLNEVP-----------DSPNKICVSNIPQYIPEEPVTMLLKSFGEL 384
Query: 322 HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
F LVKD T S+G FC Y DP+ T IA LNG+++GD+ L V RA+ Q+
Sbjct: 385 KSFVLVKDSSTEESRGIAFCEYADPSATPIAVEGLNGMELGDRHLKVVRASIGMTQA 441
>gi|391864554|gb|EIT73849.1| splicing factor U2AF, large subunit [Aspergillus oryzae 3.042]
Length = 538
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 134/295 (45%), Gaps = 45/295 (15%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P P ++L AF P
Sbjct: 142 RKRRLTQWDIKPPGYENVTAEQAKLSGMFPLPGAP--------RQQPMDPSRLQAFMSQP 193
Query: 163 VQVMTQQAT------RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV 216
+ A+ R A+R++V LP A + + +FF+ + G N D ++
Sbjct: 194 GAGTAESASLKPSNSRQAKRLFVSNLPASATGENLLSFFNLQLN--GLNVIHSVDPCISA 251
Query: 217 YINHEKKFAFVEMRTVEEASNAMALDGIIFEGV-------------AVRVRRPTDYNPTL 263
++ ++ FA +E +T +A+ A+A DGI + + VRRP DY
Sbjct: 252 QVSDDRSFALLEFKTPNDATVALAFDGITMDESEAAGNGAANGAPQGLEVRRPKDY---- 307
Query: 264 AAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHG 323
PS N G+ + + P+++ V +P+Y E + LL+SFG L
Sbjct: 308 ------IVPSGNEQEYQEGVLLNEV--PDSPNKICVSNIPHYIPEEPVTMLLKSFGELKS 359
Query: 324 FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
F LVKD T S+G FC Y DP T IA LNG+++GD+ L V RA+ Q+
Sbjct: 360 FVLVKDGSTEESRGIAFCEYADPNATSIAVEGLNGMELGDRHLKVVRASIGITQA 414
>gi|367042858|ref|XP_003651809.1| hypothetical protein THITE_2112508 [Thielavia terrestris NRRL 8126]
gi|346999071|gb|AEO65473.1| hypothetical protein THITE_2112508 [Thielavia terrestris NRRL 8126]
Length = 563
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 149/327 (45%), Gaps = 45/327 (13%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P Q M P T+L AF P
Sbjct: 166 RKRRLTQWDIKPPGYDNVTAEQAKLSGMFPLPGAPRQ-----QAMDP---TKLQAFMNQP 217
Query: 163 VQVMTQQA-----TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
+ A +R ++R+ V LP A E+++ F + + G N D +
Sbjct: 218 GGSVNSAALRPTNSRQSKRLVVENLPASATEESMVNFINLQLN--GLNVIENTDPCLQCL 275
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFEG-------------VAVRVRRPTDYNPTLA 264
I ++ FA +E R +A+ A+A DGI E +R+RRP DY +
Sbjct: 276 IAPDRSFAMLEFRNSPDATVALAFDGISMEADDAHAANGNGAAPAGLRIRRPKDY--IVP 333
Query: 265 AALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324
A + PN + + +S I + P+++ V LP Y T+ Q+ ELL SFG L F
Sbjct: 334 AVVE----DPNYDPDSDVPSSVVI---DSPNKISVTNLPLYLTDDQVMELLVSFGKLKSF 386
Query: 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA----TASSGQSKT 380
LVKD T S+G F Y DP+VT++A LN + +G++ L V++A T +G+
Sbjct: 387 VLVKDNGTQESRGIAFLEYVDPSVTNVAIQGLNNMMLGERALKVQKASIGITQVAGEMGV 446
Query: 381 EQESILAQAQQHIAIQKMALQTSGMNT 407
S+LA + LQ M T
Sbjct: 447 NAMSMLAGTTSTDSDVSRVLQLLNMVT 473
>gi|317139209|ref|XP_001817348.2| splicing factor u2af large subunit [Aspergillus oryzae RIB40]
Length = 538
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 134/295 (45%), Gaps = 45/295 (15%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P P ++L AF P
Sbjct: 142 RKRRLTQWDIKPPGYENVTAEQAKLSGMFPLPGAP--------RQQPMDPSRLQAFMSQP 193
Query: 163 VQVMTQQAT------RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV 216
+ A+ R A+R++V LP A + + +FF+ + G N D ++
Sbjct: 194 GAGTAESASLKPSNSRQAKRLFVSNLPASATGENLLSFFNLQLN--GLNVIHSVDPCISA 251
Query: 217 YINHEKKFAFVEMRTVEEASNAMALDGIIFEGV-------------AVRVRRPTDYNPTL 263
++ ++ FA +E +T +A+ A+A DGI + + VRRP DY
Sbjct: 252 QVSDDRSFALLEFKTPNDATVALAFDGITMDESEAAGNGAANGAPQGLEVRRPKDY---- 307
Query: 264 AAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHG 323
PS N G+ + + P+++ V +P+Y E + LL+SFG L
Sbjct: 308 ------IVPSGNEQEYQEGVLLNEV--PDSPNKICVSNIPHYIPEEPVTMLLKSFGELKS 359
Query: 324 FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
F LVKD T S+G FC Y DP T IA LNG+++GD+ L V RA+ Q+
Sbjct: 360 FVLVKDGSTEESRGIAFCEYADPNATSIAVEGLNGMELGDRHLKVVRASIGITQA 414
>gi|406699650|gb|EKD02849.1| splicing factor (U2 snRNP auxiliary factor large subunit)
[Trichosporon asahii var. asahii CBS 8904]
Length = 487
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 121/250 (48%), Gaps = 41/250 (16%)
Query: 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTV 232
+R+Y G+ NE + F++V+ +G + G+AV V IN EK + +VE +
Sbjct: 135 QKKRIYFAGVTDAMNENRLRKLFNKVLRDVGYD----GEAVSGVEINKEKDYVWVEFVSS 190
Query: 233 EEASNAMALDGIIFEGVAVRVRRPTDY---NPTLAAALGPGQPSPNLNLAAVGLASGAIG 289
+ A + F+G + +RP D+ +P L G P+
Sbjct: 191 DLAQVVFNKKDLDFDGAPIEPKRPKDFVGIDPALGFMGVSGDPN---------------- 234
Query: 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
+++FVGGLP ++KELL FG L F+LVK+ + SKG+ F + DPAVT
Sbjct: 235 -----NKLFVGGLPTTLGSDEVKELLTPFGELRTFNLVKEGNGSVSKGFAFVEFLDPAVT 289
Query: 350 DIACAALNGLKMGDKTLTVRRA------TASSGQSKT----EQESILAQAQQHIAIQKMA 399
DIA LNG ++GD+ L V+RA +S+G S T Q SIL +A + ++
Sbjct: 290 DIAIQGLNGFQLGDRALVVQRAATTGRSASSTGVSGTAQFLAQSSILEKADEPAPATRVI 349
Query: 400 LQTSGMNTLG 409
L +N +G
Sbjct: 350 LM---LNMVG 356
>gi|159123253|gb|EDP48373.1| splicing factor u2af large subunit [Aspergillus fumigatus A1163]
Length = 567
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 131/296 (44%), Gaps = 45/296 (15%)
Query: 106 SKSKRRSGFDMAPPA-----------AAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
++ +R + +D+ PP + M P P Q P PS + + N G+
Sbjct: 170 TRKRRLTQWDIKPPGYENVTAEQAKLSGMFPLPGAPRQQPMDPSRL-QAFMNQSGGGSAD 228
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
A + +R ARR++V LPP + + + + F+ + G N D +
Sbjct: 229 NSA--------LKPSNSRQARRLFVYNLPPGVSSEHLVSLFNLQLN--GLNVIHHVDPCI 278
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG------------VAVRVRRPTDYNPT 262
+ I+ + FA +E +T +A+ A+A DGI E + VRRP DY
Sbjct: 279 SAQISEDHSFALLEFKTPNDATVALAFDGITMEEHEPVSGAENGAPKGLEVRRPKDYIVP 338
Query: 263 LAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 322
+A Q LN + P+++ V +P Y E + LL+SFG L
Sbjct: 339 NGSADQEYQEGVLLNEVP-----------DSPNKICVSNIPQYIPEEPVTMLLKSFGELK 387
Query: 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
F LVKD T S+G FC Y DP+ T IA LNG+++GD+ L V RA+ Q+
Sbjct: 388 SFVLVKDSSTEESRGIAFCEYADPSATAIAVEGLNGMELGDRHLKVVRASIGMTQA 443
>gi|146324846|ref|XP_748978.2| splicing factor u2af large subunit [Aspergillus fumigatus Af293]
gi|129556630|gb|EAL86940.2| splicing factor u2af large subunit [Aspergillus fumigatus Af293]
Length = 563
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 131/296 (44%), Gaps = 45/296 (15%)
Query: 106 SKSKRRSGFDMAPPA-----------AAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
++ +R + +D+ PP + M P P Q P PS + + N G+
Sbjct: 166 TRKRRLTQWDIKPPGYENVTAEQAKLSGMFPLPGAPRQQPMDPSRL-QAFMNQSGGGSAD 224
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
A + +R ARR++V LPP + + + + F+ + G N D +
Sbjct: 225 NSA--------LKPSNSRQARRLFVYNLPPGVSSEHLVSLFNLQLN--GLNVIHHVDPCI 274
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG------------VAVRVRRPTDYNPT 262
+ I+ + FA +E +T +A+ A+A DGI E + VRRP DY
Sbjct: 275 SAQISEDHSFALLEFKTPNDATVALAFDGITMEEHEPVSGAENGAPKGLEVRRPKDYIVP 334
Query: 263 LAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 322
+A Q LN + P+++ V +P Y E + LL+SFG L
Sbjct: 335 NGSADQEYQEGVLLNEVP-----------DSPNKICVSNIPQYIPEEPVTMLLKSFGELK 383
Query: 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
F LVKD T S+G FC Y DP+ T IA LNG+++GD+ L V RA+ Q+
Sbjct: 384 SFVLVKDSSTEESRGIAFCEYADPSATAIAVEGLNGMELGDRHLKVVRASIGMTQA 439
>gi|407043289|gb|EKE41863.1| U2 snRNP auxiliary factor large subunit, putative [Entamoeba
nuttalli P19]
Length = 628
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 131/301 (43%), Gaps = 56/301 (18%)
Query: 73 NRDKERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPAAAMLPGAAVPGQ 132
N D+E RHR +R R SPS SP K S +D P A
Sbjct: 76 NEDREDRHRRVPEEERYNRSIRRRADRSPSLSPLGDKLPSRWDEQPKA------------ 123
Query: 133 LPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIA 192
+ Q+ Q + R A+R+YVG + +E+ I
Sbjct: 124 -----------------IDSVQIS-------QQLNVHQERAAKRIYVGNINSSTSEKDIV 159
Query: 193 TFFSQVM---TAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249
F++ M + N D + ++ +N+E+ +AF+E RT+EEA A++LDG+ +G
Sbjct: 160 DAFNEAMRRGDYVDKNDTR--DIITHIEVNYERSYAFLEFRTLEEAVKALSLDGLTIKGA 217
Query: 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTET 309
+V+VRRP DYNP L G Q + G E +++G +P T+
Sbjct: 218 SVKVRRPKDYNPVLPFISGLSQ----------LMEPGTTNPRESI--LYMGNIPLQMTDE 265
Query: 310 QIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV--YQDPAVTDIACAALNGLKMGDKTLT 367
QI++ LE+ L F +++D D G +G +C+ YQ+P + +G+ +G +
Sbjct: 266 QIRKKLENLNPLKNFFVIRDPDLGAPQGKCYCLFEYQNPEYKE-KILTFDGINLGGNKIE 324
Query: 368 V 368
V
Sbjct: 325 V 325
>gi|238482353|ref|XP_002372415.1| splicing factor u2af large subunit [Aspergillus flavus NRRL3357]
gi|220700465|gb|EED56803.1| splicing factor u2af large subunit [Aspergillus flavus NRRL3357]
Length = 556
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 134/295 (45%), Gaps = 45/295 (15%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P P ++L AF P
Sbjct: 160 RKRRLTQWDIKPPGYENVTAEQAKLSGMFPLPGAP--------RQQPMDPSRLQAFMSQP 211
Query: 163 VQVMTQQAT------RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV 216
+ A+ R A+R++V LP A + + +FF+ + G N D ++
Sbjct: 212 GAGTAESASLKPSNSRQAKRLFVSNLPASATGENLLSFFNLQLN--GLNVIHSVDPCISA 269
Query: 217 YINHEKKFAFVEMRTVEEASNAMALDGIIFEGV-------------AVRVRRPTDYNPTL 263
++ ++ FA +E +T +A+ A+A DGI + + VRRP DY
Sbjct: 270 QVSDDRSFALLEFKTPNDATVALAFDGITMDESEAAGNGAANGAPQGLEVRRPKDY---- 325
Query: 264 AAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHG 323
PS N G+ + + P+++ V +P+Y E + LL+SFG L
Sbjct: 326 ------IVPSGNEQEYQEGVLLNEV--PDSPNKICVSNIPHYIPEEPVTMLLKSFGELKS 377
Query: 324 FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
F LVKD T S+G FC Y DP T IA LNG+++GD+ L V RA+ Q+
Sbjct: 378 FVLVKDGSTEESRGIAFCEYADPNATSIAVEGLNGMELGDRHLKVVRASIGITQA 432
>gi|67475980|ref|XP_653619.1| U2 snRNP auxiliary factor large subunit [Entamoeba histolytica
HM-1:IMSS]
gi|56470591|gb|EAL48233.1| U2 snRNP auxiliary factor large subunit, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 712
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 131/301 (43%), Gaps = 56/301 (18%)
Query: 73 NRDKERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPAAAMLPGAAVPGQ 132
N D+E RHR +R R SPS SP K S +D P A
Sbjct: 76 NEDREDRHRRVPEEERYNRSIRRRADRSPSLSPLGDKLPSRWDEQPKA------------ 123
Query: 133 LPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIA 192
+ Q+ Q + R A+R+YVG + +E+ I
Sbjct: 124 -----------------IDSVQIS-------QQLNVHQERAAKRIYVGNINSSTSEKDIV 159
Query: 193 TFFSQVM---TAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249
F++ M + N D + ++ +N+E+ +AF+E RT+EEA A++LDG+ +G
Sbjct: 160 DAFNEAMRRGDYVDKNDTR--DIITHIEVNYERSYAFLEFRTLEEAVKALSLDGLTIKGA 217
Query: 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTET 309
+V+VRRP DYNP L G Q + G E +++G +P T+
Sbjct: 218 SVKVRRPKDYNPVLPFISGLSQ----------LMEPGTTNPRESI--LYMGNIPLQMTDE 265
Query: 310 QIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV--YQDPAVTDIACAALNGLKMGDKTLT 367
QI++ LE+ L F +++D D G +G +C+ YQ+P + +G+ +G +
Sbjct: 266 QIRKKLENLNPLKNFFVIRDPDLGAPQGKCYCLFEYQNPEYKE-KILTFDGINLGGNKIE 324
Query: 368 V 368
V
Sbjct: 325 V 325
>gi|449707077|gb|EMD46798.1| RNA recognition motif domain containing protein [Entamoeba
histolytica KU27]
Length = 712
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 131/301 (43%), Gaps = 56/301 (18%)
Query: 73 NRDKERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPAAAMLPGAAVPGQ 132
N D+E RHR +R R SPS SP K S +D P A
Sbjct: 76 NEDREDRHRRVPEEERYNRSIRRRADRSPSLSPLGDKLPSRWDEQPKA------------ 123
Query: 133 LPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIA 192
+ Q+ Q + R A+R+YVG + +E+ I
Sbjct: 124 -----------------IDSVQIS-------QQLNVHQERAAKRIYVGNINSSTSEKDIV 159
Query: 193 TFFSQVM---TAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249
F++ M + N D + ++ +N+E+ +AF+E RT+EEA A++LDG+ +G
Sbjct: 160 DAFNEAMRRGDYVDKNDTR--DIITHIEVNYERSYAFLEFRTLEEAVKALSLDGLTIKGA 217
Query: 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTET 309
+V+VRRP DYNP L G Q + G E +++G +P T+
Sbjct: 218 SVKVRRPKDYNPVLPFISGLSQ----------LMEPGTTNPRESI--LYMGNIPLQMTDE 265
Query: 310 QIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV--YQDPAVTDIACAALNGLKMGDKTLT 367
QI++ LE+ L F +++D D G +G +C+ YQ+P + +G+ +G +
Sbjct: 266 QIRKKLENLNPLKNFFVIRDPDLGAPQGKCYCLFEYQNPEYKE-KILTFDGINLGGNKIE 324
Query: 368 V 368
V
Sbjct: 325 V 325
>gi|452841884|gb|EME43820.1| hypothetical protein DOTSEDRAFT_71600 [Dothistroma septosporum
NZE10]
Length = 433
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 145/319 (45%), Gaps = 36/319 (11%)
Query: 74 RDKERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRR-SGFDMAPPAAAMLPG--AAVP 130
R ER+ +S S + + + L+ S + KRR + +D+ PP + A +
Sbjct: 2 RQLERQTARKSASPPPRKPKEPTPDLTEVTSVLERKRRLTQWDIKPPGYENVTAEQAKLS 61
Query: 131 GQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANE 188
G LPG P P Q + F G ++ T R ++R+ + +P A E
Sbjct: 62 GMFPLPGAPRQQPMDPQKLQAFMNQPGGEANKTALKPST---ARQSKRLLIYNIPASATE 118
Query: 189 QAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG 248
I FF+ + G N D ++ ++ +K +A +E +T E+A+NAMA DGI E
Sbjct: 119 DTIMDFFNLQLN--GLNVTRGADPCISAQLSQDKAYALLEFKTPEDATNAMAFDGINMEP 176
Query: 249 VA---------------VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEG 293
A + ++RP DY + + G + G+ S + +
Sbjct: 177 EAMVTSGNEDENGGARGLDIKRPKDY---IVPVVTDGTEN------DAGVLSNVVPDTQ- 226
Query: 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 353
+++ + +P Y E Q ELL SFG L F LVKD T S+G FC Y+DP T +A
Sbjct: 227 -NKISITNIPAYVDEEQTMELLNSFGELKNFVLVKDASTEESRGIAFCEYKDPNSTKVAV 285
Query: 354 AALNGLKMGDKTLTVRRAT 372
+L+G+ +GD + VR A+
Sbjct: 286 ESLHGMTLGDAAMKVRLAS 304
>gi|83765203|dbj|BAE55346.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 563
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 134/295 (45%), Gaps = 45/295 (15%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P P ++L AF P
Sbjct: 163 RKRRLTQWDIKPPGYENVTAEQAKLSGMFPLPGAP--------RQQPMDPSRLQAFMSQP 214
Query: 163 VQVMTQQAT------RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV 216
+ A+ R A+R++V LP A + + +FF+ + G N D ++
Sbjct: 215 GAGTAESASLKPSNSRQAKRLFVSNLPASATGENLLSFFNLQLN--GLNVIHSVDPCISA 272
Query: 217 YINHEKKFAFVEMRTVEEASNAMALDGIIFEGV-------------AVRVRRPTDYNPTL 263
++ ++ FA +E +T +A+ A+A DGI + + VRRP DY
Sbjct: 273 QVSDDRSFALLEFKTPNDATVALAFDGITMDESEAAGNGAANGAPQGLEVRRPKDY---- 328
Query: 264 AAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHG 323
PS N G+ + + P+++ V +P+Y E + LL+SFG L
Sbjct: 329 ------IVPSGNEQEYQEGVLLNEV--PDSPNKICVSNIPHYIPEEPVTMLLKSFGELKS 380
Query: 324 FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
F LVKD T S+G FC Y DP T IA LNG+++GD+ L V RA+ Q+
Sbjct: 381 FVLVKDGSTEESRGIAFCEYADPNATSIAVEGLNGMELGDRHLKVVRASIGITQA 435
>gi|315044445|ref|XP_003171598.1| splicing factor U2AF subunit [Arthroderma gypseum CBS 118893]
gi|311343941|gb|EFR03144.1| splicing factor U2AF subunit [Arthroderma gypseum CBS 118893]
Length = 565
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 134/296 (45%), Gaps = 43/296 (14%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPV- 163
+ +R + +D+ PP + A V G P +P A + A + ++L AF P
Sbjct: 165 RKRRLTQWDIKPPGYENVTAEQAKVSGMFP-LPGAPRQQAVD-----PSRLQAFMNPPAA 218
Query: 164 ------QVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
++ +R ++R++ +PP E + FF+ + G N D +V
Sbjct: 219 SGSNTNTLLKPSNSRQSKRLFTHNIPPSVTEDTLQQFFNLQLN--GLNVISGVDPCQSVQ 276
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFEG---------------VAVRVRRPTDYNPT 262
I+ + KFA +E T +A+ A+A DGI E + + RP DY
Sbjct: 277 ISKDGKFALLEFNTAADATVALAFDGITMEEHEANRENNGESNGEVKGLSIIRPKDYIVP 336
Query: 263 LAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 322
L P Q G+ S + + P+++ V +P + E Q+ LL SFG L
Sbjct: 337 LPTDEEPHQE---------GVVSSNV--PDSPNKICVSNIPPFIQEDQVTMLLVSFGELK 385
Query: 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
F LVKD T S+G FC Y DPA T IA LNG+++GD+ L V RA+ + Q+
Sbjct: 386 SFVLVKDVGTDESRGIAFCEYLDPASTGIAVEGLNGMELGDRRLKVNRASIGTVQA 441
>gi|115400045|ref|XP_001215611.1| hypothetical protein ATEG_06433 [Aspergillus terreus NIH2624]
gi|114191277|gb|EAU32977.1| hypothetical protein ATEG_06433 [Aspergillus terreus NIH2624]
Length = 413
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 107/220 (48%), Gaps = 25/220 (11%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
+R A+R++V +PP +A+ +FF+ + G N D ++ ++ + FA +E +
Sbjct: 88 SRQAKRLFVYNIPPNVTGEALLSFFNLQLN--GLNVVQSVDPCISAQVSDDHSFALLEFK 145
Query: 231 TVEEASNAMALDGIIFEGVA------------VRVRRPTDYNPTLAAALGPGQPSPNLNL 278
+ EA+ A+A DGI + A + VRRP DY +A Q LN
Sbjct: 146 SPNEATVALAFDGITMDEHASMDGAGKGEVKGLEVRRPKDYIVPNGSADQEYQEGVLLNE 205
Query: 279 AAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
+ P+++ V +P Y E + LL+SFG L F LVKD T S+G
Sbjct: 206 VP-----------DSPNKICVSNIPQYIQEEAVIMLLKSFGELKSFVLVKDASTEESRGI 254
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
FC Y DP T IA LNG+++GD+ L V RA+ Q+
Sbjct: 255 AFCEYADPTATSIAVEGLNGMEIGDRPLKVVRASIGMTQA 294
>gi|326475623|gb|EGD99632.1| splicing factor u2af large subunit [Trichophyton tonsurans CBS
112818]
gi|326483752|gb|EGE07762.1| splicing factor U2AF subunit [Trichophyton equinum CBS 127.97]
Length = 565
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 134/296 (45%), Gaps = 43/296 (14%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPV- 163
+ +R + +D+ PP + A V G P +P A + A + ++L AF P
Sbjct: 156 RKRRLTQWDIKPPGYENVTAEQAKVSGMFP-LPGAPRQQAVD-----PSRLQAFMNPPAA 209
Query: 164 ------QVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
++ +R ++R++ +PP E + FF+ + G N D +V
Sbjct: 210 SGSSNNTLLKPSNSRQSKRLFAHNIPPSVTEDTLQQFFNLQLN--GLNVISGVDPCQSVQ 267
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFEG---------------VAVRVRRPTDYNPT 262
I+ + KFA +E T +A+ A+A DGI E + + RP DY
Sbjct: 268 ISKDGKFALLEFNTAADATVALAFDGITMEEHEANRESNGESNGEVKGLTIVRPKDYIVP 327
Query: 263 LAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 322
L P Q G+ S + + P+++ V +P + E Q+ LL SFG L
Sbjct: 328 LPTDEEPRQE---------GVVSSNV--PDSPNKICVSNIPPFIQEDQVTMLLVSFGELK 376
Query: 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
F LVKD T S+G FC Y DPA T IA LNG+++GD+ L V RA+ + Q+
Sbjct: 377 SFVLVKDVGTDESRGIAFCEYLDPASTGIAVEGLNGMELGDRRLKVNRASIGTVQA 432
>gi|242803779|ref|XP_002484243.1| splicing factor u2af large subunit [Talaromyces stipitatus ATCC
10500]
gi|218717588|gb|EED17009.1| splicing factor u2af large subunit [Talaromyces stipitatus ATCC
10500]
Length = 543
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 133/295 (45%), Gaps = 45/295 (15%)
Query: 107 KSKRRSGFDMAPPA-----------AAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQL 155
+ +R + +D+ PP + M P P Q PS + + N G T+
Sbjct: 147 RKRRLTQWDIKPPGYDNVTAEQAKLSGMFPLPGAPRQQAVDPSRLQALV-NQPAAGTTEN 205
Query: 156 GAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVN 215
A L P +R A+R++ LPP E A+ +FF+ + G N D V+
Sbjct: 206 SA--LRPAN------SRQAKRLFAHNLPPNVTEAALVSFFNLQLN--GLNVIEGIDPCVS 255
Query: 216 VYINHEKKFAFVEMRTVEEASNAMALDGIIFE-----------GVAVRVRRPTDY-NPTL 263
I+ + FA +E + E + A+ALDGI E + +RRP DY P++
Sbjct: 256 AQISKDHSFALLEFKGANETTVALALDGITMEEHESAATANGGARGLELRRPKDYIVPSV 315
Query: 264 AAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHG 323
P Q S + S + + P+++ + +P Y E + LL+S G L
Sbjct: 316 PEDQQPHQES---------VISNHV--PDSPNKLCITNIPLYIPEEPVTMLLKSIGELKA 364
Query: 324 FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
F LVKD T S+G FC Y D A T IA +LNG+++GDK L + A+ + Q+
Sbjct: 365 FVLVKDSGTDESRGIAFCEYVDAASTAIAVESLNGMELGDKHLKITHASIGATQA 419
>gi|432095994|gb|ELK26905.1| Splicing factor U2AF 65 kDa subunit [Myotis davidii]
Length = 171
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 94/177 (53%), Gaps = 36/177 (20%)
Query: 161 MPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH 220
MPV V TR ARR+ VG +P E+A+ +N
Sbjct: 31 MPVPVAVSNMTRQARRLCVGNIPFGITEEAM--------------------------VNR 64
Query: 221 EKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
+K FAF+E R+V+E + AMALDGIIF+G ++++RRP DY P + P P
Sbjct: 65 DKNFAFLEFRSVDETTQAMALDGIIFQGQSLKIRRPHDYQPLPDMSENPSVYLP------ 118
Query: 281 VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
G+ S + + ++F+GGLPYY + Q+KELL SFG L F+LVKD TG S+G
Sbjct: 119 -GVVSTVV--PDSAHKLFMGGLPYYLKD-QVKELLTSFGPLKAFNLVKDGATGLSRG 171
>gi|414591751|tpg|DAA42322.1| TPA: hypothetical protein ZEAMMB73_939656 [Zea mays]
Length = 704
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 70/106 (66%), Gaps = 5/106 (4%)
Query: 112 SGFDMAPP--AAAMLPGAAVPGQLPGVPSAVPEMA--QNMLPFGATQLGAFPLMPVQVMT 167
SGFD AP A ++ +PGQLPGV + +P + N+ A Q + P Q MT
Sbjct: 184 SGFDQAPTQQAVPIVAAGVIPGQLPGVTAPIPGVGVLPNLYNLAAGQFNPHVIQP-QAMT 242
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAV 213
QQATRHAR VYVGGLPP ANEQ +A FF+ VM AIGGN+AGPGDAV
Sbjct: 243 QQATRHARPVYVGGLPPTANEQTVAIFFNGVMAAIGGNTAGPGDAV 288
>gi|296811258|ref|XP_002845967.1| splicing factor U2AF subunit [Arthroderma otae CBS 113480]
gi|238843355|gb|EEQ33017.1| splicing factor U2AF subunit [Arthroderma otae CBS 113480]
Length = 557
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 134/296 (45%), Gaps = 43/296 (14%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPV- 163
+ +R + +D+ PP + A + G P +P A + A + ++L AF P
Sbjct: 157 RKRRLTQWDIKPPGYENVTAEQAKLSGMFP-LPGAPRQQAVD-----PSRLQAFINPPTA 210
Query: 164 ------QVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
++ +R ++R++ +PP E + FF+ + G N D +V
Sbjct: 211 SGSSNNTLLKPSNSRQSKRLFAHNIPPSVTEDTLQQFFNLQLN--GLNVISGVDPCQSVQ 268
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFEG---------------VAVRVRRPTDYNPT 262
I+ + KFA +E T +A+ A+A DGI E + + RP DY
Sbjct: 269 ISKDGKFALLEFNTAADATVALAFDGITMEEHEANQESNGESNGQVKGLSIVRPKDYIVP 328
Query: 263 LAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 322
L P Q G+ S + + P+++ V +P + E Q+ LL SFG L
Sbjct: 329 LPTEEEPRQE---------GVLSSNV--PDSPNKICVSNIPPFIQEDQVTMLLISFGELK 377
Query: 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
F LVKD T S+G FC Y DPA T IA LNG+++GD+ L V RA+ + Q+
Sbjct: 378 SFVLVKDVGTDESRGIAFCEYLDPASTGIAVEGLNGMELGDRRLKVNRASIGTVQA 433
>gi|358369529|dbj|GAA86143.1| splicing factor u2af large subunit [Aspergillus kawachii IFO 4308]
Length = 571
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 130/297 (43%), Gaps = 49/297 (16%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P P ++L AF P
Sbjct: 175 RKRRLTQWDIKPPGYENVTAEQAKLSGMFPLPGAP--------RQQPMDPSRLQAFMNQP 226
Query: 163 ------VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV 216
+ +R A+R++V +P + + FF+ + G N D ++
Sbjct: 227 AGGNADTSTLKPSNSRQAKRLFVYNIPQTVTGETLLAFFNVQLN--GLNVIESVDPCISA 284
Query: 217 YINHEKKFAFVEMRTVEEASNAMALDGIIFE-------------GVAVRVRRPTDYNPTL 263
+ + FA +E ++ +A+ A+A DGI E + VRRP DY
Sbjct: 285 QVAQDHSFALLEFKSPNDATVALAFDGIAMEEHEAAGNGAANGAAQGLEVRRPKDY---- 340
Query: 264 AAALGPGQPSPNLNLAAVGLASGAIGGA--EGPDRVFVGGLPYYFTETQIKELLESFGTL 321
+ PG A G + + P+++ V +P+Y E + LL+SFG L
Sbjct: 341 ---IVPGG-------AEQEYQEGVLLNEVPDSPNKICVSNIPHYIPEEPVTMLLKSFGEL 390
Query: 322 HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
F LVKD T S+G FC Y DP+ T IA LNG+++GD+ L V RA+ Q+
Sbjct: 391 KSFVLVKDSSTEESRGIAFCEYADPSATTIAVEGLNGMELGDRHLKVVRASIGMTQA 447
>gi|407929464|gb|EKG22293.1| hypothetical protein MPH_00360 [Macrophomina phaseolina MS6]
Length = 824
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 109/220 (49%), Gaps = 25/220 (11%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
+R A+R++V P + + +I FF+ + + N D ++V I+ ++ FA E +
Sbjct: 18 SRQAKRLFVYNFPAASTDDSIQDFFNLQLNHL--NVISSSDPCISVQISKDRTFALCEFK 75
Query: 231 TVEEASNAMALDGIIFEG------------VAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
T E+ + A+ALDG E +++ RP DY + P Q S + +
Sbjct: 76 TPEDTTMALALDGQSMEAEDASNGASNGGHSGIKISRPKDY-------IVPAQ-SDDADY 127
Query: 279 AAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
G+ S + +GP ++ V +P Y TE Q+ +LL +FG L F LVKD T SKG
Sbjct: 128 QE-GVVSNKV--KDGPHKICVAQIPVYLTEEQVMDLLSAFGGLKAFTLVKDTGTDQSKGI 184
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
FC Y DP TD A L+G+++ L V++A Q+
Sbjct: 185 AFCEYVDPDTTDPAVEGLDGMEIAQDHLKVKKACVGIQQA 224
>gi|302656965|ref|XP_003020217.1| hypothetical protein TRV_05722 [Trichophyton verrucosum HKI 0517]
gi|291184026|gb|EFE39599.1| hypothetical protein TRV_05722 [Trichophyton verrucosum HKI 0517]
Length = 486
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 106/223 (47%), Gaps = 28/223 (12%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
+R ++R++ +PP E + FF+ + G N D +V I+ + KFA +E
Sbjct: 161 SRQSKRLFAHNIPPNVTEDTLQQFFNLQLN--GLNVISGVDPCQSVQISKDGKFALLEFN 218
Query: 231 TVEEASNAMALDGIIFEG---------------VAVRVRRPTDYNPTLAAALGPGQPSPN 275
T +A+ A+A DGI E + + RP DY + P Q
Sbjct: 219 TAADATVALAFDGITMEEHEANRESNGESNGDVKGLTIVRPKDYIVPIPTDEEPRQE--- 275
Query: 276 LNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNS 335
G+ S + + P+++ V +P + E Q+ LL SFG L F LVKD T S
Sbjct: 276 ------GVVSSNV--PDSPNKICVSNIPPFIQEDQVTMLLVSFGELKSFVLVKDVGTDES 327
Query: 336 KGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
+G FC Y DPA T IA LNG+++GD+ L V RA+ + Q+
Sbjct: 328 RGIAFCEYLDPASTGIAVEGLNGMELGDRRLKVNRASIGTVQA 370
>gi|302511201|ref|XP_003017552.1| hypothetical protein ARB_04434 [Arthroderma benhamiae CBS 112371]
gi|291181123|gb|EFE36907.1| hypothetical protein ARB_04434 [Arthroderma benhamiae CBS 112371]
Length = 501
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 106/223 (47%), Gaps = 28/223 (12%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
+R ++R++ +PP E + FF+ + G N D +V I+ + KFA +E
Sbjct: 161 SRQSKRLFAHNIPPNVTEDTLQQFFNLQLN--GLNVISGVDPCQSVQISKDGKFALLEFN 218
Query: 231 TVEEASNAMALDGIIFEG---------------VAVRVRRPTDYNPTLAAALGPGQPSPN 275
T +A+ A+A DGI E + + RP DY + P Q
Sbjct: 219 TAADATVALAFDGITMEEHEANRESNGESNGEVKGLTIVRPKDYIVPIPTDEEPRQE--- 275
Query: 276 LNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNS 335
G+ S + + P+++ V +P + E Q+ LL SFG L F LVKD T S
Sbjct: 276 ------GVVSSNV--PDSPNKICVSNIPPFIQEDQVTMLLVSFGELKSFVLVKDVGTDES 327
Query: 336 KGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
+G FC Y DPA T IA LNG+++GD+ L V RA+ + Q+
Sbjct: 328 RGIAFCEYLDPASTGIAVEGLNGMELGDRRLKVNRASIGTVQA 370
>gi|224077134|ref|XP_002305147.1| predicted protein [Populus trichocarpa]
gi|222848111|gb|EEE85658.1| predicted protein [Populus trichocarpa]
Length = 191
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 107/174 (61%), Gaps = 23/174 (13%)
Query: 15 SRHK--SSWVSGRSRTGERGRDRHHRDFKSG------GDDRRRDKNYKYDREGIRDHDRT 66
SRHK SS S R+ RGR + H ++ G +D RRDK +DR H+R+
Sbjct: 23 SRHKTYSSRESEHDRSRTRGRGKDHDRYRGGYKDGSVRNDGRRDKFGDFDR-----HERS 77
Query: 67 DR------HRDYNRDKERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPA 120
R HRDY+ D+ RR+ +RS S+S RF+NRS+S S SRSPSKSKR+SGFDMAP
Sbjct: 78 SRGRNYHRHRDYDGDRGRRNGNRSSSYSQGRFQNRSRSRSRSRSPSKSKRKSGFDMAPSE 137
Query: 121 AAMLPGAAV----PGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQA 170
MLPGAAV GQLP +P +P + QN L FG TQ G FPLMP Q MTQQ
Sbjct: 138 VGMLPGAAVAVNDAGQLPSLPQTMPGVVQNALQFGTTQFGVFPLMPAQAMTQQV 191
>gi|317029342|ref|XP_001391373.2| splicing factor u2af large subunit [Aspergillus niger CBS 513.88]
Length = 561
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 130/297 (43%), Gaps = 49/297 (16%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P P ++L AF P
Sbjct: 165 RKRRLTQWDIKPPGYENVTAEQAKLSGMFPLPGAP--------RQQPMDPSRLQAFMNQP 216
Query: 163 ------VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV 216
+ +R A+R++V +P + + FF+ + G N D ++
Sbjct: 217 AGGNADTSTLKPSNSRQAKRLFVYNIPESVTGETLLAFFNVQLN--GLNVIQSVDPCISA 274
Query: 217 YINHEKKFAFVEMRTVEEASNAMALDGIIFE-------------GVAVRVRRPTDYNPTL 263
+ + FA +E ++ +A+ A+A DGI E + VRRP DY
Sbjct: 275 QVAQDHTFALLEFKSPNDATVALAFDGIAMEEHEAAGNGAANGAAQGLEVRRPKDY---- 330
Query: 264 AAALGPGQPSPNLNLAAVGLASGAIGGA--EGPDRVFVGGLPYYFTETQIKELLESFGTL 321
+ PG A G + + P+++ V +P+Y E + LL+SFG L
Sbjct: 331 ---IVPGG-------AEQEYQEGVLLNEVPDSPNKICVSNIPHYIPEEPVTMLLKSFGEL 380
Query: 322 HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
F LVKD T S+G FC Y DP+ T IA LNG+++GD+ L V RA+ Q+
Sbjct: 381 KSFVLVKDSSTEESRGIAFCEYADPSATTIAVEGLNGMELGDRHLKVVRASIGMTQA 437
>gi|350635494|gb|EHA23855.1| hypothetical protein ASPNIDRAFT_209800 [Aspergillus niger ATCC
1015]
Length = 566
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 130/297 (43%), Gaps = 49/297 (16%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P P ++L AF P
Sbjct: 150 RKRRLTQWDIKPPGYENVTAEQAKLSGMFPLPGAP--------RQQPMDPSRLQAFMNQP 201
Query: 163 ------VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV 216
+ +R A+R++V +P + + FF+ + G N D ++
Sbjct: 202 AGGNADTSTLKPSNSRQAKRLFVYNIPESVTGETLLAFFNVQLN--GLNVIQSVDPCISA 259
Query: 217 YINHEKKFAFVEMRTVEEASNAMALDGIIFE-------------GVAVRVRRPTDYNPTL 263
+ + FA +E ++ +A+ A+A DGI E + VRRP DY
Sbjct: 260 QVAQDHTFALLEFKSPNDATVALAFDGIAMEEHEAAGNGAANGAAQGLEVRRPKDY---- 315
Query: 264 AAALGPGQPSPNLNLAAVGLASGAIGGA--EGPDRVFVGGLPYYFTETQIKELLESFGTL 321
+ PG A G + + P+++ V +P+Y E + LL+SFG L
Sbjct: 316 ---IVPGG-------AEQEYQEGVLLNEVPDSPNKICVSNIPHYIPEEPVTMLLKSFGEL 365
Query: 322 HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
F LVKD T S+G FC Y DP+ T IA LNG+++GD+ L V RA+ Q+
Sbjct: 366 KSFVLVKDSSTEESRGIAFCEYADPSATTIAVEGLNGMELGDRHLKVVRASIGMTQA 422
>gi|134075845|emb|CAL00224.1| unnamed protein product [Aspergillus niger]
Length = 598
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 130/297 (43%), Gaps = 49/297 (16%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P P ++L AF P
Sbjct: 182 RKRRLTQWDIKPPGYENVTAEQAKLSGMFPLPGAP--------RQQPMDPSRLQAFMNQP 233
Query: 163 ------VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV 216
+ +R A+R++V +P + + FF+ + G N D ++
Sbjct: 234 AGGNADTSTLKPSNSRQAKRLFVYNIPESVTGETLLAFFNVQLN--GLNVIQSVDPCISA 291
Query: 217 YINHEKKFAFVEMRTVEEASNAMALDGIIFE-------------GVAVRVRRPTDYNPTL 263
+ + FA +E ++ +A+ A+A DGI E + VRRP DY
Sbjct: 292 QVAQDHTFALLEFKSPNDATVALAFDGIAMEEHEAAGNGAANGAAQGLEVRRPKDY---- 347
Query: 264 AAALGPGQPSPNLNLAAVGLASGAIGGA--EGPDRVFVGGLPYYFTETQIKELLESFGTL 321
+ PG A G + + P+++ V +P+Y E + LL+SFG L
Sbjct: 348 ---IVPGG-------AEQEYQEGVLLNEVPDSPNKICVSNIPHYIPEEPVTMLLKSFGEL 397
Query: 322 HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
F LVKD T S+G FC Y DP+ T IA LNG+++GD+ L V RA+ Q+
Sbjct: 398 KSFVLVKDSSTEESRGIAFCEYADPSATTIAVEGLNGMELGDRHLKVVRASIGMTQA 454
>gi|400602736|gb|EJP70338.1| splicing factor U2AF 65 kDa subunit [Beauveria bassiana ARSEF 2860]
Length = 576
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 171/384 (44%), Gaps = 69/384 (17%)
Query: 33 RDRHHRDFKSGGDDRRRDKNYKYDR-------------EGIRDHDRTDRHRD-------- 71
RDR + +GG DRR D+ + DR G RD D D +R
Sbjct: 99 RDREREERYTGGRDRRGDREWDRDRGSSRRDARRDDDGHGRRDRDGFDENRRGGRDRRDD 158
Query: 72 -YNRDKERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRR-SGFDMAPPA--AAMLPGA 127
+ R +ERR S S + R + L+ + KRR + +D+ PP A A
Sbjct: 159 GFARQQERR------SPSPPKRREPTPDLTDVIPVLERKRRMTQWDIKPPGYEAVTSEQA 212
Query: 128 AVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMPV--QV----MTQQATRHARRVYV 179
+ G LPG P Q M P T+L AF P QV + +R A+R+ V
Sbjct: 213 KMSGMFPLPGAPRQ-----QQMDP---TKLQAFMNQPAGGQVSSAGLKASNSRQAKRLLV 264
Query: 180 GGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM 239
LP + A+ FF+ + + SA D ++++K FA +E + +A+ A+
Sbjct: 265 SNLPSGTTDDALVAFFNLQLNGLNVISAT--DPCALSQLSNDKSFAVLEFKNTSDATVAL 322
Query: 240 ALDGIIFE--GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPD-- 295
ALDGI E G + +RRP DY + A P+ + + S ++ PD
Sbjct: 323 ALDGISMEANGPGLSIRRPKDY--VMPAV-------PDDIMYNPDVVSDSV-----PDTI 368
Query: 296 -RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDP-AVTDIAC 353
++ + LP + TE Q+ ELL +FG F LVKDR T S+G F Y +P + + A
Sbjct: 369 HKLSITNLPPFLTEEQVLELLAAFGKPKAFVLVKDRTTEESRGIAFAEYAEPGSANEAAL 428
Query: 354 AALNGLKMGDKTLTVRRATASSGQ 377
AL+G+ +G K L + +A Q
Sbjct: 429 KALSGMDVGGKPLKITKACIGGTQ 452
>gi|71028054|ref|XP_763670.1| U2 small nuclear ribonucleoprotein, auxiliary factor, large subunit
[Theileria parva strain Muguga]
gi|68350624|gb|EAN31387.1| U2 small nuclear ribonucleoprotein, auxiliary factor, large
subunit, putative [Theileria parva]
Length = 380
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 104/208 (50%), Gaps = 32/208 (15%)
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFS-QVMTAIGGNSAGPGDAVVN---VYINHEKK 223
++A + +R+YVG LP Q + FF+ +M + GN+ P D +V +Y N ++
Sbjct: 49 EEAKKRQKRLYVGNLPSGTKLQDVVDFFNGALMAMVPGNTIDPRDPLVTKTEIY-NPDQG 107
Query: 224 FAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGL 283
+ F+E +T E A A LDGI G ++++RRP D+N
Sbjct: 108 YCFLEFKTPELADLAFKLDGITCNGYSLKLRRPLDFN----------------------- 144
Query: 284 ASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343
+G +VFV +P TE Q+KELLE G L +L+KD TG SKGYGF +
Sbjct: 145 ----LGTNSDDTKVFVQNIPLDVTEDQMKELLEKHGKLKLANLLKDPATGVSKGYGFFEF 200
Query: 344 QDPAVTDIACAALNGLKMGDKTLTVRRA 371
+D + +A LNG +G L+V+ A
Sbjct: 201 EDARSSKLAVLHLNGSVLGKNVLSVKHA 228
>gi|327297188|ref|XP_003233288.1| splicing factor u2af large subunit [Trichophyton rubrum CBS 118892]
gi|326464594|gb|EGD90047.1| splicing factor u2af large subunit [Trichophyton rubrum CBS 118892]
Length = 563
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 132/295 (44%), Gaps = 41/295 (13%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVP---SAVPEMAQNML-PFGATQLGAF 158
+ +R + +D+ PP + A V G LPG P + P Q + P A+ G
Sbjct: 156 RKRRLTQWDIKPPGYENVTAEQAKVSGMFPLPGAPRQQAVDPSRLQAFMNPPAASGSGNN 215
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
L+ +R ++R++ +PP E + FF+ + G N D +V I
Sbjct: 216 TLL-----KPSNSRQSKRLFAHNIPPNVTEDTLQQFFNLQLN--GLNVISGVDPCQSVQI 268
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEG---------------VAVRVRRPTDYNPTL 263
+ + KFA +E T +A+ A+A DGI E + + RP DY L
Sbjct: 269 SKDGKFALLEFNTAADATVALAFDGITMEEHEANRESNGESNGNVKGLTIVRPKDYIVPL 328
Query: 264 AAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHG 323
P Q G+ S + + P+++ V +P + E Q+ LL SFG L
Sbjct: 329 PTDEEPRQE---------GVVSSNV--PDSPNKICVSNIPPFIQEDQVTMLLVSFGELKS 377
Query: 324 FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
F LVKD T S+G FC Y D A T IA LNG+++GD+ L V RA+ + Q+
Sbjct: 378 FVLVKDVGTDESRGIAFCEYLDSASTGIAVEGLNGMELGDRRLKVNRASIGTVQA 432
>gi|212539736|ref|XP_002150023.1| splicing factor u2af large subunit [Talaromyces marneffei ATCC
18224]
gi|210067322|gb|EEA21414.1| splicing factor u2af large subunit [Talaromyces marneffei ATCC
18224]
Length = 551
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 134/291 (46%), Gaps = 37/291 (12%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQ 164
+ +R + +D+ PP + A + G P +P A + A + ++L A P
Sbjct: 155 RKRRMTQWDIKPPGYDNVTAEQAKLSGMFP-LPGAPRQQAVD-----PSRLQALVNQPSA 208
Query: 165 VMTQQAT------RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
T+ +T R A+R++ LPP + A+ +FF+ + G N D V+ I
Sbjct: 209 TTTESSTLRPANSRQAKRLFAYNLPPNVTDAALISFFNLQLN--GLNVIEGIDPCVSSQI 266
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFE-----------GVAVRVRRPTDYNPTLAAAL 267
+ + FA +E + EA+ A+ALDGI E + +RRP DY +
Sbjct: 267 SKDHAFALLEFKGPNEATVALALDGISMEEHEAAATTNGGARGLELRRPKDY-------I 319
Query: 268 GPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLV 327
P P + G+ S + + P+++ V +P Y E + LL+S G L F LV
Sbjct: 320 VPSSPE-DQQPYQEGVISNQV--PDSPNKLCVTNIPLYIPEEPVTMLLKSIGELRAFVLV 376
Query: 328 KDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
KD T S+G FC Y D T IA +LNG+++GDK L + A+ Q+
Sbjct: 377 KDSGTDESRGIAFCEYVDATATAIAVESLNGMELGDKHLKITHASIGVTQA 427
>gi|320170643|gb|EFW47542.1| splicing factor u2af large subunit [Capsaspora owczarzaki ATCC
30864]
Length = 393
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 100/173 (57%), Gaps = 9/173 (5%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRT 231
R +RR+Y+GG+ P + I F ++ M G S+ PG+ V+ + + +K FAF++MRT
Sbjct: 98 RQSRRLYIGGIVPGTPDVLIVDFLNREMNQRGMTSS-PGNPVLAIQMTPDKNFAFLDMRT 156
Query: 232 VEEASNAMALDGIIFEGVAVRVRRPTDYN-------PTLAAALGPGQPSPNLNLAAVGLA 284
EEA+ +ALDGI FEG R++RP +Y P+L + A G +
Sbjct: 157 SEEATMCIALDGIPFEGTVFRIKRPKEYEGREANDPPSLFGMPSSSGGGFSSQGGAQGGS 216
Query: 285 SGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
G G + P+++++GGLP+ E QI+ELL++FG + F LV++ + G SKG
Sbjct: 217 FGGSMGNDNPNKIYIGGLPFSLDEQQIRELLQTFGVIRNFSLVREGN-GQSKG 268
>gi|212539738|ref|XP_002150024.1| splicing factor u2af large subunit [Talaromyces marneffei ATCC
18224]
gi|210067323|gb|EEA21415.1| splicing factor u2af large subunit [Talaromyces marneffei ATCC
18224]
Length = 556
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 134/291 (46%), Gaps = 37/291 (12%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQ 164
+ +R + +D+ PP + A + G P +P A + A + ++L A P
Sbjct: 155 RKRRMTQWDIKPPGYDNVTAEQAKLSGMFP-LPGAPRQQAVD-----PSRLQALVNQPSA 208
Query: 165 VMTQQAT------RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
T+ +T R A+R++ LPP + A+ +FF+ + G N D V+ I
Sbjct: 209 TTTESSTLRPANSRQAKRLFAYNLPPNVTDAALISFFNLQLN--GLNVIEGIDPCVSSQI 266
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFE-----------GVAVRVRRPTDYNPTLAAAL 267
+ + FA +E + EA+ A+ALDGI E + +RRP DY +
Sbjct: 267 SKDHAFALLEFKGPNEATVALALDGISMEEHEAAATTNGGARGLELRRPKDY-------I 319
Query: 268 GPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLV 327
P P + G+ S + + P+++ V +P Y E + LL+S G L F LV
Sbjct: 320 VPSSPE-DQQPYQEGVISNQV--PDSPNKLCVTNIPLYIPEEPVTMLLKSIGELRAFVLV 376
Query: 328 KDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
KD T S+G FC Y D T IA +LNG+++GDK L + A+ Q+
Sbjct: 377 KDSGTDESRGIAFCEYVDATATAIAVESLNGMELGDKHLKITHASIGVTQA 427
>gi|358417046|ref|XP_001256277.3| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Bos taurus]
Length = 330
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 95/177 (53%), Gaps = 8/177 (4%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFP 159
RSP K K R +D+ PP + P Q + +A A +LP A
Sbjct: 78 RSPRHEKKKKVRKYWDVPPPGFEHI----TPMQYKAMQAAGQIPATALLPTMTPDGLAVT 133
Query: 160 LMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN 219
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN
Sbjct: 134 PTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQIN 192
Query: 220 HEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNL 276
+K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P + P P L
Sbjct: 193 QDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGL 249
>gi|425773483|gb|EKV11835.1| Splicing factor u2af large subunit [Penicillium digitatum Pd1]
Length = 585
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 146/341 (42%), Gaps = 61/341 (17%)
Query: 106 SKSKRRSGFDMAPPA-----------AAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
++ +R + +DM PP + M P P Q P PS + + P G +
Sbjct: 204 TRKRRLTQWDMKPPGYENVTAEQAKISGMFPLPGAPRQQPMDPSRMKDFLNP--PTGDSD 261
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
A L P +R ++R++V +P + A+ FF+ + G N D +
Sbjct: 262 NAA--LKPSN------SRQSKRLFVYNIPSGVSGDAVIAFFNLQLN--GLNVVHSVDPCI 311
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFE---GVAVRVRRPTDYNPTLAAALGPGQ 271
+ ++ +K FA +E + +A+ A+A DGI + VRRP DY +A P Q
Sbjct: 312 SAQVSEDKTFALLEFKDPNDATVALAFDGITMAESGDKGLEVRRPKDYIVPDGSASQPVQ 371
Query: 272 PSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD 331
LN + P+++ + +P Y E I LL+SFG L F LVKD
Sbjct: 372 AGVVLNEVP-----------DSPNKICISNIPTYINEEAIIMLLKSFGDLKSFVLVKDAA 420
Query: 332 TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQ 391
T S+G F Y DP T +A LNG+++ D+ L RA+ + Q+
Sbjct: 421 TEESRGIAFYEYVDPNNTALAVEGLNGMELVDRHLKFVRASIGTTQA------------- 467
Query: 392 HIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMMKSM 432
SG++ M +F +T ++ L T++++ +
Sbjct: 468 -----------SGLDMGVNAMQMFAKTTSQDLETTQVLQLL 497
>gi|425775779|gb|EKV14031.1| Splicing factor u2af large subunit [Penicillium digitatum PHI26]
Length = 585
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 146/341 (42%), Gaps = 61/341 (17%)
Query: 106 SKSKRRSGFDMAPPA-----------AAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
++ +R + +DM PP + M P P Q P PS + + P G +
Sbjct: 204 TRKRRLTQWDMKPPGYENVTAEQAKISGMFPLPGAPRQQPMDPSRMKDFLNP--PTGDSD 261
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
A L P +R ++R++V +P + A+ FF+ + G N D +
Sbjct: 262 NAA--LKPSN------SRQSKRLFVYNIPSGVSGDAVIAFFNLQLN--GLNVVHSVDPCI 311
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFE---GVAVRVRRPTDYNPTLAAALGPGQ 271
+ ++ +K FA +E + +A+ A+A DGI + VRRP DY +A P Q
Sbjct: 312 SAQVSEDKTFALLEFKDPNDATVALAFDGITMAESGDKGLEVRRPKDYIVPDGSASQPVQ 371
Query: 272 PSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD 331
LN + P+++ + +P Y E I LL+SFG L F LVKD
Sbjct: 372 AGVVLNEVP-----------DSPNKICISNIPTYINEEAIIMLLKSFGDLKSFVLVKDAA 420
Query: 332 TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQ 391
T S+G F Y DP T +A LNG+++ D+ L RA+ + Q+
Sbjct: 421 TEESRGIAFYEYVDPNNTALAVEGLNGMELVDRHLKFVRASIGTTQA------------- 467
Query: 392 HIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMMKSM 432
SG++ M +F +T ++ L T++++ +
Sbjct: 468 -----------SGLDMGVNAMQMFAKTTSQDLETTQVLQLL 497
>gi|303279322|ref|XP_003058954.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460114|gb|EEH57409.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 559
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 115/247 (46%), Gaps = 33/247 (13%)
Query: 164 QVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGG--NSAGPGDAVVNVYINHE 221
Q Q TR ARR+Y+GG+PP A + F + +M G N A G VV+V I HE
Sbjct: 149 QTAYAQHTRQARRLYIGGIPPGAINSDVQRFLNDLMLNSGAAINPAA-GPPVVDVKIQHE 207
Query: 222 KKFAFVEMRTVEEASNAMALDGIIF--EGVAVRVRRPTDYNPTLAAAL--------GP-- 269
K F F E ++A +A+ DG+++ G +RV RP DY+P+ + GP
Sbjct: 208 KGFGFAEFTNCDDAQSALMFDGVVYGDTGRKIRVNRPRDYDPSKNPVVIRDGLQIEGPKG 267
Query: 270 ---------GQPSPNLNLAAVGLASGAIG--------GAEGPDRVFVGGLPYYFTETQIK 312
P P A+ + +GP++++VGG TE Q +
Sbjct: 268 IGLLGEKQANAPPPWPEDLAIPAPPPLVSEWPKLPKRTPDGPNKLYVGGFDPLHTEGQTR 327
Query: 313 ELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
++L++ G L F ++ D G + G+ FC + DP +T +A AL G + + +RA
Sbjct: 328 QVLQAIGELKSFCVMPDA-RGRNTGHVFCEFADPRLTVVAEEALTGAWCFRQPIVCKRAM 386
Query: 373 ASSGQSK 379
+ +K
Sbjct: 387 PDAAPAK 393
>gi|378731414|gb|EHY57873.1| U2AF domain-containing protein (UHM) kinase 1 [Exophiala
dermatitidis NIH/UT8656]
Length = 574
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 134/300 (44%), Gaps = 50/300 (16%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P Q M P ++L AF +P
Sbjct: 174 RKRRLTQWDIKPPGYENVTAEQAKMSGMFPLPGAPRQ-----QQMDP---SRLQAFMNLP 225
Query: 163 VQVMTQQA-----TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
A +R ARR++V LP +E+A+ FF+ + G N D
Sbjct: 226 SSSSNNTALKPSNSRQARRLFVHNLPASVSEEALVQFFNLQLN--GLNVTKAVDPCAQAN 283
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFEG-------------------VAVRVRRPTD 258
I ++ FA VE + +A+ A+ALDGI + +RRP D
Sbjct: 284 IAEDRSFALVEFKNASDATLALALDGITMPEHHSEMNGNGDANGNGTAAPKGLEIRRPKD 343
Query: 259 YNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESF 318
Y PS + A G S + + +++ V LP + T+ Q+ ELL++F
Sbjct: 344 Y----------IVPSADEATYAEGEISSEV--PDTANKLAVTNLPPFLTDDQVIELLKAF 391
Query: 319 GTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
G + F LV++ D+ S+G FC Y DPA T +A LNG+ + ++ V RA+ Q+
Sbjct: 392 GEVKAFVLVREPDSQESRGIAFCEYADPASTAVAIEGLNGMDLAGNSIKVTRASIGYQQA 451
>gi|330931856|ref|XP_003303563.1| hypothetical protein PTT_15819 [Pyrenophora teres f. teres 0-1]
gi|311320368|gb|EFQ88342.1| hypothetical protein PTT_15819 [Pyrenophora teres f. teres 0-1]
Length = 578
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 122/260 (46%), Gaps = 37/260 (14%)
Query: 133 LPGVPSAVPEMAQNMLPFGATQLGAFPLMP------VQVMTQQATRHARRVYVGGLPPLA 186
LPG P A P M P ++L AF + P + A + ++R+YV LP
Sbjct: 218 LPGAPRAAP-----MDP---SKLAAF-ISPSAGTATAAALATSAAKQSKRLYVHNLPSGC 268
Query: 187 NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIF 246
Q I FF+ + G N D ++ +I K++A +E + E+A+ A+A++GI
Sbjct: 269 TSQEIMEFFNNQLN--GLNVVSGNDPCLSAHIATSKEYAALEFKAPEDATLALAMNGISM 326
Query: 247 --EGVA-----VRVRRPTDY-NPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVF 298
EG A + +RRP DY PT P P +++V + P+++
Sbjct: 327 RDEGGAPDRSGLSIRRPKDYITPTADENAYP----PGDEVSSVV--------KDSPNKLS 374
Query: 299 VGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG 358
+ +P Y E QI+EL+E+ G L F LVKD T +G FC Y D + D LN
Sbjct: 375 IVNIPTYIEEEQIRELVETMGKLKAFILVKDTGTDQHRGIAFCEYADNEIIDAVIEGLND 434
Query: 359 LKMGDKTLTVRRATASSGQS 378
+ +GD L V RAT QS
Sbjct: 435 IPLGDGNLKVSRATVGLQQS 454
>gi|451849636|gb|EMD62939.1| hypothetical protein COCSADRAFT_200575 [Cochliobolus sativus
ND90Pr]
Length = 576
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 142/320 (44%), Gaps = 68/320 (21%)
Query: 133 LPGVPSAVPEMAQNMLPFGATQLGAFPLMP------VQVMTQQATRHARRVYVGGLPPLA 186
LPG P A P M P ++L AF + P + A + ++R+YV LP
Sbjct: 216 LPGAPRAAP-----MDP---SKLAAF-ISPSTGTATAAALATSAAKQSKRLYVHNLPSGC 266
Query: 187 NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIF 246
Q I FF+ + + S GP D V+ +I K++A +E + E+A+ A+A++GI
Sbjct: 267 TSQEIMEFFNTQLNGLNVVS-GP-DPCVSAHIATSKEYAALEFKAPEDATLALAMNGISM 324
Query: 247 -------EGVAVRVRRPTDY-NPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVF 298
+ + +RRP DY PT P P +++V + P+++
Sbjct: 325 RDDGGAPDRAGLSIRRPKDYITPTADENAYP----PGDEVSSVV--------KDSPNKLS 372
Query: 299 VGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG 358
+ +P Y E QI+EL+E+ G L F LVKD T +G FC Y D + D LN
Sbjct: 373 IVNIPTYIEEEQIRELVETMGKLKAFILVKDTSTDQHRGIAFCEYADNEIIDAVIEGLND 432
Query: 359 LKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGET 418
+ +GD L V RAT + +Q QT+G++ G +S+
Sbjct: 433 IPLGDGNLKVSRAT--------------------VGLQ----QTTGLDGGVGAISMLAGA 468
Query: 419 LA-------KVLCLTEMMKS 431
A +V+CL M+ S
Sbjct: 469 SAVENREHSRVVCLMNMVTS 488
>gi|189204129|ref|XP_001938400.1| splicing factor U2AF 65 kDa subunit [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985499|gb|EDU50987.1| splicing factor U2AF 65 kDa subunit [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 572
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 121/260 (46%), Gaps = 37/260 (14%)
Query: 133 LPGVPSAVPEMAQNMLPFGATQLGAFPLMP------VQVMTQQATRHARRVYVGGLPPLA 186
LPG P A P M P ++L AF + P + A + ++R+YV LP
Sbjct: 212 LPGAPRAAP-----MDP---SKLAAF-ISPSAGTATAAALATSAAKQSKRLYVHNLPSGC 262
Query: 187 NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIF 246
Q I FF+ + G N D ++ +I K++A +E + E+A+ A+A+ GI
Sbjct: 263 TSQEIMEFFNNQLN--GLNVVSGNDPCLSAHIATSKEYAALEFKAPEDATLALAMTGISM 320
Query: 247 --EGVA-----VRVRRPTDY-NPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVF 298
EG A + +RRP DY PT P P +++V + P+++
Sbjct: 321 RDEGGAPDRSGLSIRRPKDYITPTADENAYP----PGDEVSSVV--------KDSPNKLS 368
Query: 299 VGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG 358
+ +P Y E QI+EL+E+ G L F LVKD T +G FC Y D + D LN
Sbjct: 369 IVNIPTYIEEEQIRELVETMGKLKAFILVKDTGTDQHRGIAFCEYADNEIIDAVIEGLND 428
Query: 359 LKMGDKTLTVRRATASSGQS 378
+ +GD L V RAT QS
Sbjct: 429 IPLGDGNLKVSRATVGLQQS 448
>gi|218192051|gb|EEC74478.1| hypothetical protein OsI_09930 [Oryza sativa Indica Group]
Length = 1128
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 107/205 (52%), Gaps = 12/205 (5%)
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQ-VMTAIGGNSAGPGDAVVNVYINHEKK 223
V QATR RR+++ LP LA E + ++ ++++ + ++ IN +K+
Sbjct: 628 VQLTQATRPLRRLHIENLPSLATEDMLIGCLNEFLLSSSASHIQRSKQPCLSCVINKDKR 687
Query: 224 FAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGL 283
AFVE T E+A+ A++ DG F G ++++RRP +Y A + P +PS + L + +
Sbjct: 688 QAFVEFLTPEDATAALSFDGRSFGGSSLKIRRPKEY--VEMAHVAPKKPSEEIKLISDVV 745
Query: 284 ASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343
A+ P ++F+ G+ + + E++ SFG L + + + D G + F Y
Sbjct: 746 -------ADSPHKIFIAGISGVISSEMLMEIVSSFGPLAAYRFLFNEDLGGA--CAFLEY 796
Query: 344 QDPAVTDIACAALNGLKMGDKTLTV 368
D ++T ACA LNG+K+G LT
Sbjct: 797 IDHSITSKACAGLNGMKLGGGILTA 821
>gi|84996015|ref|XP_952729.1| splicing factor [Theileria annulata strain Ankara]
gi|65303726|emb|CAI76103.1| splicing factor, putative [Theileria annulata]
Length = 380
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 102/208 (49%), Gaps = 32/208 (15%)
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFS-QVMTAIGGNSAGPGDAVVN---VYINHEKK 223
++A + +R+YVG LP Q + FF+ +M + GN+ P D +V +Y N ++
Sbjct: 49 EEARKRQKRLYVGNLPSGTKLQDVVDFFNGALMAMVPGNTMDPRDPLVTKTEIY-NPDQG 107
Query: 224 FAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGL 283
+ F+E +T E A LDGI G ++++RRP D+N
Sbjct: 108 YCFLEFKTPELADLGFKLDGITCNGYSLKIRRPLDFN----------------------- 144
Query: 284 ASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343
+G +VFV +P TE ++K LLE G L +L+KD TG SKGYGF +
Sbjct: 145 ----LGANSDDTKVFVQNIPLDVTEDEMKALLEKHGKLKMANLLKDPATGVSKGYGFFEF 200
Query: 344 QDPAVTDIACAALNGLKMGDKTLTVRRA 371
+D + +A LNG +G L+V+ A
Sbjct: 201 EDARSSKLAVLHLNGSVLGKNVLSVKHA 228
>gi|340503018|gb|EGR29650.1| splicing factor u2af large subunit, putative [Ichthyophthirius
multifiliis]
Length = 438
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 110/215 (51%), Gaps = 5/215 (2%)
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFV 227
Q+ HA R+Y+G +P + + + F + + GG PG+ +++ + KKF F+
Sbjct: 109 QKNYIHALRIYIGNIPDPIDTEDVCHFVYKSLLESGG-LLEPGNPIISKKNDPIKKFIFL 167
Query: 228 EMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGA 287
++R++EE S M LDGI+++G ++R RRP DY T+ G + P L+ + +
Sbjct: 168 QLRSIEETSACMQLDGILYKGKSLRFRRPKDYT-TMPQVEG-TRKIPILDRNKLRIVQTQ 225
Query: 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
+ +++ V +P +E + ++L+++G L F L D TG SKG+ FC Y
Sbjct: 226 VENTY--NKLQVMNIPETISEEHVMQILQNYGELRSFHLAVDIYTGESKGFAFCEYLTDK 283
Query: 348 VTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQ 382
T L+G ++ +K + V+R + EQ
Sbjct: 284 ATMDCLNQLSGQQILNKIINVKRCNPNLAPPVEEQ 318
>gi|167515386|ref|XP_001742034.1| RNA-binding region RNP-1 containing protein [Monosiga brevicollis
MX1]
gi|163778658|gb|EDQ92272.1| RNA-binding region RNP-1 containing protein [Monosiga brevicollis
MX1]
Length = 431
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 122/277 (44%), Gaps = 50/277 (18%)
Query: 75 DKERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPP------AAAMLPGAA 128
D++RR R R R S+ +P S + G++ PP G
Sbjct: 16 DRDRRSRSLERDS-----RRSSERDAPEPSEAWDVPPPGYENMPPKVYKDYVCTYFAGLP 70
Query: 129 VPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANE 188
+ +LPG+ S++P PL TR ARR+YVGG+P AN+
Sbjct: 71 ISAELPGLRSSMPN----------------PL----------TRGARRLYVGGIPNGAND 104
Query: 189 QAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG 248
+A FF+ +T G + GPG VV+ IN EK FAF+E+R+ EEA++ +A D I+F G
Sbjct: 105 MELAEFFNMQLTQ-QGLTIGPGAPVVSAQINEEKSFAFLELRSPEEATSCIAFDNIMFMG 163
Query: 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPD--------RVFVG 300
+R+RRP DY A G P +++ R+ V
Sbjct: 164 NQLRIRRPKDYQ----APAGGTSEVPKVDMPMPRPMPMPTPMPMPTPMPMLVPSGRLNVT 219
Query: 301 GLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
+P E Q++EL FGT+ +L K+ +T G
Sbjct: 220 NIPLAMDEEQLRELFSVFGTIASLELRKEPETDKFAG 256
>gi|358378060|gb|EHK15743.1| hypothetical protein TRIVIDRAFT_79964 [Trichoderma virens Gv29-8]
Length = 503
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 163/394 (41%), Gaps = 75/394 (19%)
Query: 33 RDRHHRDFKSGGDDRRRDKNYKYDREGIRDHDRTDRHRDYNRDKER-------------- 78
RDR D S G DRR D+ + DR R R D NR +ER
Sbjct: 11 RDREREDRYSSGRDRRGDREWDRDRGSYRRDARRDDDERPNR-REREPYDDRRRGGGRER 69
Query: 79 --------RHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRR-SGFDMAPPAAAMLPG--A 127
R RS S + R + L+ + KRR + +D+ PP ++ A
Sbjct: 70 ERRDDGFARQEQPRRSPSPPKKREPTPDLTDIVPVLERKRRLTQWDIKPPGYDLVTAEQA 129
Query: 128 AVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQA-----TRHARRVYVG 180
+ G LPG P P T+L AF P +T +R A+R+ V
Sbjct: 130 KLSGMFPLPGAP--------RQQPMDPTKLQAFMTQPGGQVTSAGLKASNSRQAKRLLVS 181
Query: 181 GLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA 240
+P + A+ +FF+ + G N D V + +K FA +E R +A+ A+A
Sbjct: 182 NVPSSVTDDALISFFNLQLN--GLNVIDSSDPCVLSQFSQDKAFAVLEFRNASDATVALA 239
Query: 241 LDGIIFE------GVA------VRVRRPTDY-NPTLAAALGPGQPSPNLNLAAVGLASGA 287
LDGI E G A + +RRP DY P L + P P N+
Sbjct: 240 LDGITMEADDAQNGTANGGNHGLVIRRPKDYVMPALPDEM-PYDPEVISNVV-------- 290
Query: 288 IGGAEGPD---RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQ 344
PD ++ + +P + E Q+ ELL +FG F LVKDR T S+G F Y
Sbjct: 291 ------PDTVHKLCITNIPSFLNEDQVIELLAAFGKPKAFVLVKDRSTEESRGIAFTEYL 344
Query: 345 DPAV-TDIACAALNGLKMGDKTLTVRRATASSGQ 377
+P+ + A +LNG+ +G K L V +A+ Q
Sbjct: 345 EPSTANEPALNSLNGMDVGGKKLKVTKASIGPTQ 378
>gi|118489922|gb|ABK96758.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 787
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 15/230 (6%)
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF 224
+ QAT RR+Y+ +P A+E+A+ + + + G + ++ EK
Sbjct: 285 IQLTQATHPIRRLYMENIPASASEKAVMDCLNNFLISSGVHHIQGTQPCISCIRQKEKGQ 344
Query: 225 AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLA 284
A VE T E+AS A++ DG F G ++VRRP D+ + A G L A
Sbjct: 345 ALVEFLTPEDASAALSFDGRSFSGSIIKVRRPKDF---IEVATG--------ELEKSAAA 393
Query: 285 SGAIGG--AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
AIG + P ++F+GG+ + + E+ +FG L + +D + + F
Sbjct: 394 IDAIGDIVKDSPHKIFIGGISKVLSSKMLMEIASAFGPLKAYQFENRKDP--DEPFAFLE 451
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQH 392
Y D +VT ACA LNG+K+G + +T +A ++ S ++ S Q QH
Sbjct: 452 YADESVTFKACAGLNGMKLGGQVITAIQAVPNASSSGSDGNSQFGQISQH 501
>gi|46125343|ref|XP_387225.1| hypothetical protein FG07049.1 [Gibberella zeae PH-1]
Length = 564
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 131/292 (44%), Gaps = 42/292 (14%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P P ++L AF P
Sbjct: 159 RQRRLTQWDIKPPGYDNVTAEQAKLSGMFPLPGAP--------RQQPMDPSKLQAFMNQP 210
Query: 163 VQVMTQQA-----TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
+T + +R ++R+ V +PP +E A+ FF+ + G N D V
Sbjct: 211 GGQVTSASLKASNSRQSKRLLVSRIPPGTSEDALIAFFNLQLN--GLNVIDTTDPCVLCQ 268
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFEGV-----------AVRVRRPTDYNPTLAAA 266
++++ FA +E + E + A+ALDGI E + +RRP DY + A
Sbjct: 269 FSNDRSFAVIEFKDAPETTVALALDGISMEANDASNGADGGHRGLEIRRPRDY--VVPAV 326
Query: 267 LGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326
P + V + +++ + +P + TE QI ELL SFG F L
Sbjct: 327 TEDVAYDPEVVSNVV---------PDTVNKLSITNIPPFLTEEQIIELLASFGKPKAFVL 377
Query: 327 VKDRDTGNSKGYGFCVYQDPAVTD-IACAALNGLKMGDKTLTVRRATASSGQ 377
VKDR T S+G F YQDPAV++ A LNG+ +G K + V +A+ Q
Sbjct: 378 VKDRGTEESRGIAFAEYQDPAVSNPTALDTLNGMDIGGKQIKVSKASIGPTQ 429
>gi|195393580|ref|XP_002055432.1| GJ19364 [Drosophila virilis]
gi|194149942|gb|EDW65633.1| GJ19364 [Drosophila virilis]
Length = 476
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 98/191 (51%), Gaps = 29/191 (15%)
Query: 131 GQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQA 190
GQ+P S VP+ Q +P V+ TR ARR+YVG +P E+
Sbjct: 66 GQIPA--SVVPDTPQTAVP---------------VVGSTITRQARRLYVGNIPFGVTEEE 108
Query: 191 IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250
+ FF+Q M +G A G V+ IN +K FAF+E R+++E + AMA DGI +G
Sbjct: 109 MMEFFNQQMHLVGLAQAA-GSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQD 167
Query: 251 VRVRRPTDYNPTLAAALGPG-QPSPNLNLAAVGLASGAIGGA--EGPDRVFVGGLPYYFT 307
+++RRP DY P PG +P + A V +SG I + P ++F+GGLP Y
Sbjct: 168 LKIRRPHDYQPM------PGITDTPAVKPAVV--SSGVISTVVPDSPHKIFIGGLPNYLN 219
Query: 308 ETQIKELLESF 318
+ Q + L +F
Sbjct: 220 DEQKEFTLNAF 230
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 15/119 (12%)
Query: 311 IKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370
+KELL SFG L F+LVKD TG SKGY FC Y D ++TD + A LNG+++GDK L V+R
Sbjct: 283 VKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQR 342
Query: 371 ATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
A+ + ++ + Q + LQ G++T+ + +VLCL M+
Sbjct: 343 ASVGAKNAQNAANT----------SQSVMLQVPGLSTV-----VTSGPPTEVLCLLNMV 386
>gi|108706082|gb|ABF93877.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 720
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 106/204 (51%), Gaps = 12/204 (5%)
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQ-VMTAIGGNSAGPGDAVVNVYINHEKK 223
V QATR RR+++ LP LA E + ++ ++++ + ++ IN +K+
Sbjct: 464 VQLTQATRPLRRLHIENLPSLATEDMLIGCLNEFLLSSSASHIQRSKQPCLSCVINKDKR 523
Query: 224 FAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGL 283
AFVE T E+A+ A++ DG F G ++++RRP +Y A + P +PS + L + +
Sbjct: 524 QAFVEFLTPEDATAALSFDGRSFGGSSLKIRRPKEY--VEMAHVAPKKPSEEIKLISDVV 581
Query: 284 ASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343
A+ P ++F+ G+ + + E++ SFG L + + + G + F Y
Sbjct: 582 -------ADSPHKIFIAGISGVISSEMLMEIVSSFGPLAAYRFLFNEYLGGA--CAFLEY 632
Query: 344 QDPAVTDIACAALNGLKMGDKTLT 367
D ++T ACA LNG+K+G LT
Sbjct: 633 IDHSITSKACAGLNGMKLGGGILT 656
>gi|389642205|ref|XP_003718735.1| splicing factor U2AF 50 kDa subunit [Magnaporthe oryzae 70-15]
gi|351641288|gb|EHA49151.1| splicing factor U2AF 50 kDa subunit [Magnaporthe oryzae 70-15]
Length = 620
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 103/215 (47%), Gaps = 26/215 (12%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
+R ++R+ + LP E ++ +F + + + N D + + + FA VE R
Sbjct: 289 SRQSKRLILSNLPAGTTEDSLISFLNLQLNGL--NVIEASDPCLACQMAPDGSFAMVEFR 346
Query: 231 TVEEASNAMALDGIIFE----------GVAVR---VRRPTDYNPTLAAALGPGQPSPNLN 277
+ + + A ALDGI E G A + +RRP DY + A + P
Sbjct: 347 SPSDTTVAYALDGISMEAEDAGNGDANGAASKGLAMRRPKDY--IVPAVVDDTGYEP--- 401
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
G+ S + + P ++ V LP Y T+ Q+ ELL SFG L L KD T S+G
Sbjct: 402 ----GVVSSRV--VDTPHKISVTNLPAYLTDEQVVELLSSFGELKALVLAKDSSTEESRG 455
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
FC Y D TD+A LNG+++GDK L VR+A+
Sbjct: 456 IAFCEYVDVTNTDVAIEGLNGMELGDKRLKVRKAS 490
>gi|108706081|gb|ABF93876.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 704
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 106/204 (51%), Gaps = 12/204 (5%)
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQ-VMTAIGGNSAGPGDAVVNVYINHEKK 223
V QATR RR+++ LP LA E + ++ ++++ + ++ IN +K+
Sbjct: 464 VQLTQATRPLRRLHIENLPSLATEDMLIGCLNEFLLSSSASHIQRSKQPCLSCVINKDKR 523
Query: 224 FAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGL 283
AFVE T E+A+ A++ DG F G ++++RRP +Y A + P +PS + L + +
Sbjct: 524 QAFVEFLTPEDATAALSFDGRSFGGSSLKIRRPKEY--VEMAHVAPKKPSEEIKLISDVV 581
Query: 284 ASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343
A+ P ++F+ G+ + + E++ SFG L + + + G + F Y
Sbjct: 582 -------ADSPHKIFIAGISGVISSEMLMEIVSSFGPLAAYRFLFNEYLGGA--CAFLEY 632
Query: 344 QDPAVTDIACAALNGLKMGDKTLT 367
D ++T ACA LNG+K+G LT
Sbjct: 633 IDHSITSKACAGLNGMKLGGGILT 656
>gi|440468063|gb|ELQ37246.1| splicing factor U2AF 50 kDa subunit [Magnaporthe oryzae Y34]
gi|440489023|gb|ELQ68704.1| splicing factor U2AF 50 kDa subunit [Magnaporthe oryzae P131]
Length = 640
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 103/215 (47%), Gaps = 26/215 (12%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
+R ++R+ + LP E ++ +F + + + N D + + + FA VE R
Sbjct: 289 SRQSKRLILSNLPAGTTEDSLISFLNLQLNGL--NVIEASDPCLACQMAPDGSFAMVEFR 346
Query: 231 TVEEASNAMALDGIIFE----------GVAVR---VRRPTDYNPTLAAALGPGQPSPNLN 277
+ + + A ALDGI E G A + +RRP DY + A + P
Sbjct: 347 SPSDTTVAYALDGISMEAEDAGNGDANGAASKGLAMRRPKDY--IVPAVVDDTGYEP--- 401
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
G+ S + + P ++ V LP Y T+ Q+ ELL SFG L L KD T S+G
Sbjct: 402 ----GVVSSRV--VDTPHKISVTNLPAYLTDEQVVELLSSFGELKALVLAKDSSTEESRG 455
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
FC Y D TD+A LNG+++GDK L VR+A+
Sbjct: 456 IAFCEYVDVTNTDVAIEGLNGMELGDKRLKVRKAS 490
>gi|452001453|gb|EMD93912.1| hypothetical protein COCHEDRAFT_1020092 [Cochliobolus
heterostrophus C5]
Length = 352
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 105/215 (48%), Gaps = 22/215 (10%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRT 231
+ ++R+YV LP Q I FF+ + + S GP D V+ +I K++A +E +
Sbjct: 28 KQSKRLYVHNLPSGCTSQEIMEFFNTQLNGLNVVS-GP-DPCVSAHIATSKEYAALEFKA 85
Query: 232 VEEASNAMALDGIIF-------EGVAVRVRRPTDY-NPTLAAALGPGQPSPNLNLAAVGL 283
E+A+ A+A++GI + + +RRP DY PT P P +++V
Sbjct: 86 PEDATLALAMNGISMRDDGGAPDRAGLSIRRPKDYITPTADENAYP----PGDEVSSVV- 140
Query: 284 ASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343
+ P+++ + +P Y E QI+EL+E+ G L F LVKD T +G FC Y
Sbjct: 141 -------KDSPNKLSIVNIPTYIEEEQIRELVETMGKLKAFILVKDTSTDQHRGIAFCEY 193
Query: 344 QDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
D + D LN + +GD L V RAT Q+
Sbjct: 194 ADNEIIDAVIEGLNDIPLGDGNLKVSRATVGLQQT 228
>gi|242037001|ref|XP_002465895.1| hypothetical protein SORBIDRAFT_01g047730 [Sorghum bicolor]
gi|241919749|gb|EER92893.1| hypothetical protein SORBIDRAFT_01g047730 [Sorghum bicolor]
Length = 969
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 130/277 (46%), Gaps = 25/277 (9%)
Query: 102 SRSPSK-----SKRRSGFDMAPPAA--AMLPGAAVP--GQLPGVPSAVPEMAQNMLPFGA 152
+++PSK K+ + +D P A + P +P GQ+ +P + + ++
Sbjct: 391 TKTPSKVIQSPEKKSATWDQPPVKANQSNFPTTFLPTVGQMAPIPFSFSTIKKDPSTTVE 450
Query: 153 TQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVM--TAIGGNSAGPG 210
T L L V QATR RR+++ LP A E + + + T I + P
Sbjct: 451 TMLVGNSLTADSVQLTQATRPLRRLHIENLPDSATEDKLIDCLNDFLLPTGIKPQRSKP- 509
Query: 211 DAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPG 270
++ IN EK+ AFVE T E+A+ A++ DG G +R+RRP +Y T+ + P
Sbjct: 510 --CLSCTINREKRQAFVEFLTPEDATAALSFDGRSLNGSTLRIRRPKEYVETV--NVTPK 565
Query: 271 QPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330
+P+ L S + A+ P ++F+ G+ + + E++ +FG L + + +
Sbjct: 566 KPA-----EETALISDVV--ADSPHKIFIAGIAGVISSEMLMEIVSAFGPLAAYRFLFNS 618
Query: 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367
+ G F Y D ++T ACA LNG+ +G LT
Sbjct: 619 ELGGP--CAFLEYADRSITSKACAGLNGMMLGGCVLT 653
>gi|108706080|gb|ABF93875.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 964
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 106/204 (51%), Gaps = 12/204 (5%)
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQ-VMTAIGGNSAGPGDAVVNVYINHEKK 223
V QATR RR+++ LP LA E + ++ ++++ + ++ IN +K+
Sbjct: 464 VQLTQATRPLRRLHIENLPSLATEDMLIGCLNEFLLSSSASHIQRSKQPCLSCVINKDKR 523
Query: 224 FAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGL 283
AFVE T E+A+ A++ DG F G ++++RRP +Y A + P +PS + L + +
Sbjct: 524 QAFVEFLTPEDATAALSFDGRSFGGSSLKIRRPKEY--VEMAHVAPKKPSEEIKLISDVV 581
Query: 284 ASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343
A+ P ++F+ G+ + + E++ SFG L + + + G + F Y
Sbjct: 582 -------ADSPHKIFIAGISGVISSEMLMEIVSSFGPLAAYRFLFNEYLGGA--CAFLEY 632
Query: 344 QDPAVTDIACAALNGLKMGDKTLT 367
D ++T ACA LNG+K+G LT
Sbjct: 633 IDHSITSKACAGLNGMKLGGGILT 656
>gi|402073699|gb|EJT69251.1| splicing factor U2AF 50 kDa subunit [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 623
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 102/217 (47%), Gaps = 30/217 (13%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
+R ++R+ V P E+A+ F + + + N D + + + FA +E R
Sbjct: 292 SRQSKRLIVTNFAPGTTEEALVAFMNLQLNGL--NVIESTDPCLLCQMAPDSSFAILEFR 349
Query: 231 TVEEASNAMALDGIIFE-------GVA------VRVRRPTDYNPTLAAALGPGQPSPNLN 277
+ E + A+ALDGI E G A + +RRP DY + A+
Sbjct: 350 SPAETTVALALDGITMEAEDTPMEGAANGTPQGLELRRPKDY---IVPAV---------- 396
Query: 278 LAAVGLASGAIGG--AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNS 335
+ G G + + P ++ + L Y TE Q+ ELL SFG L LVKD T S
Sbjct: 397 VEDTGYERGVVSSRVVDTPHKIGITNLAPYLTEEQVTELLVSFGELKALVLVKDSGTEES 456
Query: 336 KGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+G FC Y DP TD+A LN +++G+K L V++A+
Sbjct: 457 RGIAFCEYVDPVATDVAIHGLNNMELGEKRLRVKKAS 493
>gi|322693990|gb|EFY85833.1| splicing factor, putative [Metarhizium acridum CQMa 102]
Length = 584
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 123/437 (28%), Positives = 178/437 (40%), Gaps = 56/437 (12%)
Query: 16 RHKSSWVSGRSRTGERGRDRHHRDFKSGGDDRRRDKNYKYDREGIRDHDRTDRHRDYNRD 75
R + SGR R GER DR + D+ + DREG D R R D D
Sbjct: 86 REREDRYSGRDRRGERDWDRDRGSSRRDARRDEDDRPNRRDREGFDDRRRGGRGGDRRDD 145
Query: 76 KERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRR-SGFDMAPPAAAMLPG--AAVPGQ 132
+ RS S + R + L+ + KRR + +D+ PP ++ A + G
Sbjct: 146 GGFARQESRRSPSPAKPREPTPDLTDIIPVLERKRRMTQWDIKPPGYELVTAEQAKLSGM 205
Query: 133 --LPGVPSAVPEMAQNMLPFGATQLGAFPLMP-----VQVMTQQATRHARRVYVGGLPPL 185
LPG P P T+L AF P + +R A+R+ V +P
Sbjct: 206 FPLPGAP--------RQQPMDPTKLQAFMKEPNGGVSSAGLKASNSRQAKRLIVSNIPQG 257
Query: 186 ANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGII 245
+E+++ +FF+ + G N D + ++ FA +E R +A+ A+ALDGI
Sbjct: 258 NSEESLISFFNLQLN--GLNVIESSDPCNLCQFSTDRSFAVLEFRNAGDATVALALDGIN 315
Query: 246 FEG-----------VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGP 294
E + +RRP DY + A PN+ V P
Sbjct: 316 MEADDTMNGDGGEKQGLSIRRPKDY--VMPAIPEEMAYDPNVVSNVV------------P 361
Query: 295 DRVF---VGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDP-AVTD 350
D V + +P + TE QI ELL +FG F LVKDR T S+G F Y +P + +
Sbjct: 362 DTVHKLSITNIPTFLTEDQIIELLAAFGKPKAFVLVKDRSTEESRGIAFAEYLEPGSANE 421
Query: 351 IACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGG 410
A +ALNG+ +G K L V +A+ Q I AI +A QTS G
Sbjct: 422 PALSALNGMDVGGKKLKVAKASIGPTQVANFDVGI-------TAISGLASQTSTDAEKGR 474
Query: 411 GMSLFGETLAKVLCLTE 427
+ L + L TE
Sbjct: 475 VLQLLNMVTPEELMDTE 491
>gi|357017085|gb|AET50571.1| hypothetical protein [Eimeria tenella]
Length = 527
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 28/228 (12%)
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNS-------AGPGDAVVNVY 217
V ++ R ARR+++ +PP E I FF+ + A+ + A ++ V
Sbjct: 155 VTHSESDRIARRLFISNIPPGTTEADICGFFNGALLAVNAQTGYTDLSLASDKPQLLPVE 214
Query: 218 ----INHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGP--GQ 271
+ + F+++R+ E + LDGI F +++V RP +Y + P G
Sbjct: 215 RCEGLQENSRHCFLDLRSHEWVVLCLKLDGITFNNNSLKVLRPKEY-------VQPPGGD 267
Query: 272 PSPNLNLAAVGLASGAIGG---AEGPDR-----VFVGGLPYYFTETQIKELLESFGTLHG 323
P+ +++ + + A P R +++ LP E Q+++LLE FG L
Sbjct: 268 PAKTVHIPELERGTKPQQNEVRATAPPRSADCKLYIQNLPPEMGEDQVRDLLEQFGKLRV 327
Query: 324 FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
+L+K+R TG +GYGF Y+DP VTD A ALNG G L+V+R+
Sbjct: 328 LNLIKNRQTGKHRGYGFFEYEDPEVTDQAIEALNGFVCGASVLSVQRS 375
>gi|108706079|gb|ABF93874.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 964
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 106/204 (51%), Gaps = 12/204 (5%)
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQ-VMTAIGGNSAGPGDAVVNVYINHEKK 223
V QATR RR+++ LP LA E + ++ ++++ + ++ IN +K+
Sbjct: 464 VQLTQATRPLRRLHIENLPSLATEDMLIGCLNEFLLSSSASHIQRSKQPCLSCVINKDKR 523
Query: 224 FAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGL 283
AFVE T E+A+ A++ DG F G ++++RRP +Y A + P +PS + L + +
Sbjct: 524 QAFVEFLTPEDATAALSFDGRSFGGSSLKIRRPKEY--VEMAHVAPKKPSEEIKLISDVV 581
Query: 284 ASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343
A+ P ++F+ G+ + + E++ SFG L + + + G + F Y
Sbjct: 582 -------ADSPHKIFIAGISGVISSEMLMEIVSSFGPLAAYRFLFNEYLGGA--CAFLEY 632
Query: 344 QDPAVTDIACAALNGLKMGDKTLT 367
D ++T ACA LNG+K+G LT
Sbjct: 633 IDHSITSKACAGLNGMKLGGGILT 656
>gi|408397958|gb|EKJ77095.1| hypothetical protein FPSE_02739 [Fusarium pseudograminearum CS3096]
Length = 554
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 129/292 (44%), Gaps = 42/292 (14%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP + A + G LPG P P ++L AF P
Sbjct: 159 RQRRLTQWDIKPPGYDNVTAEQAKLSGMFPLPGAP--------RQQPMDPSKLQAFMNQP 210
Query: 163 VQVMTQQA-----TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
+T +R ++R+ V +PP +E + FF+ + G N D V
Sbjct: 211 GGQVTSAGLKASNSRQSKRLLVSRIPPGTSEDTLIAFFNLQLN--GLNVIDTTDPCVLCQ 268
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFEGV-----------AVRVRRPTDYNPTLAAA 266
++++ FA +E + E + A+ALDGI E + +RRP DY + A
Sbjct: 269 FSNDRSFAVIEFKDAPETTVALALDGISMEANDASNGADGGHRGLEIRRPRDY--VVPAV 326
Query: 267 LGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326
P + V + +++ + +P + TE QI ELL SFG F L
Sbjct: 327 TEDVAYDPEVVSNVV---------PDTVNKLSITNIPPFLTEEQIIELLASFGKPKAFVL 377
Query: 327 VKDRDTGNSKGYGFCVYQDPAVTD-IACAALNGLKMGDKTLTVRRATASSGQ 377
VKDR T S+G F YQDPAV++ A LNG+ +G K + V +A+ Q
Sbjct: 378 VKDRGTEESRGIAFAEYQDPAVSNPTALDTLNGMDIGGKQIKVSKASIGPTQ 429
>gi|348681357|gb|EGZ21173.1| hypothetical protein PHYSODRAFT_488481 [Phytophthora sojae]
Length = 640
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 119/283 (42%), Gaps = 61/283 (21%)
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEM 229
A + AR +YVG LPP + F S ++ +G + PG+ ++N +I+ + FAF EM
Sbjct: 272 AQKPARELYVGNLPPNVTGPQLQEFLSTIIQQVGLTTQ-PGNPIINTWISTDGHFAFCEM 330
Query: 230 RTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP----------------- 272
R+VEE + A+ L+ + G ++ RP + +GP QP
Sbjct: 331 RSVEECNLALLLNQLSLLGQPLKFGRPRSF-------MGPPQPMPQISARTQTALTNLGC 383
Query: 273 -----------SPNLNLAAVG-------------------------LASGAIGGAEGPDR 296
P+L+ AA +AS + + R
Sbjct: 384 TPNPAWFAQPAVPSLDEAAAAPVGDSSTLAGATAAAVAAAQPAVPAVASTTVDASLSAHR 443
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+ + +P TE Q+KEL+E FG L F LVKD TG S G Y+D +VT A L
Sbjct: 444 LIMSNIPVVLTEDQVKELVEPFGALKSFTLVKDTATGASMGSALFEYEDDSVTAQAVEGL 503
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMA 399
NGL +G L+V+ AS + Q A+ KMA
Sbjct: 504 NGLSIGGILLSVQCQPASGAALPAAPGATPNFEDQPSAVLKMA 546
>gi|389585165|dbj|GAB67896.1| U2 snRNP auxiliary factor [Plasmodium cynomolgi strain B]
Length = 894
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 7/170 (4%)
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDY------NPTLAAALGPGQ 271
N E +F F+E R++E + LD I F +R+ RP D+ +P L
Sbjct: 575 FNVESRFCFLEFRSLEITWLCLRLDAISFNNYCLRIARPHDFVPPPGGDPALTVVFTDIN 634
Query: 272 PSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD 331
+ V +A G + +++++ LP+ + QI++LL+ FG L GF+++KD +
Sbjct: 635 HEVFEMVKPVKIAPVRSTG-DDDNKLYIQNLPHDLRDDQIRDLLQQFGKLKGFNVIKDLN 693
Query: 332 TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTE 381
TG +KGYGF Y+D T IA ALNG G L V++AT Q+ T+
Sbjct: 694 TGLNKGYGFFEYEDSNCTPIAMHALNGFVCGQNILNVKKATFGKSQNSTQ 743
>gi|301121478|ref|XP_002908466.1| splicing factor U2af large subunit, putative [Phytophthora
infestans T30-4]
gi|262103497|gb|EEY61549.1| splicing factor U2af large subunit, putative [Phytophthora
infestans T30-4]
Length = 597
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 107/242 (44%), Gaps = 49/242 (20%)
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEM 229
A + AR +YVG LPP + F S ++ +G + PG+ ++N + + + FAF EM
Sbjct: 242 AQKPARELYVGNLPPNVTGPQLQEFLSTIIQQVGLTTQ-PGNPIINTWTSTDGHFAFCEM 300
Query: 230 RTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNL---------NLAA 280
R+VEE + A+ L+ + G ++ RP + +GP QP P + NL
Sbjct: 301 RSVEECNLALLLNQLSLLGQPLKFGRPRSF-------MGPPQPMPQVSARTQTALTNLGC 353
Query: 281 V-----------------------------GLASGAIGGAEGP---DRVFVGGLPYYFTE 308
+A+ G+E +R+ + +P E
Sbjct: 354 TPNPAWFAQHTVSSTETTTTETTLAEATLSAIAAAQPAGSEAVSSGNRLIMSNIPVVLAE 413
Query: 309 TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
Q+KEL+E FG L F LVKD TG S G Y+D V A LNGL +G L+V
Sbjct: 414 EQVKELVEPFGKLKSFTLVKDSATGASLGSALFEYEDSDVAAQAVEGLNGLSIGGILLSV 473
Query: 369 RR 370
+R
Sbjct: 474 QR 475
>gi|396472864|ref|XP_003839217.1| hypothetical protein LEMA_P028900.1 [Leptosphaeria maculans JN3]
gi|312215786|emb|CBX95738.1| hypothetical protein LEMA_P028900.1 [Leptosphaeria maculans JN3]
Length = 587
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 137/319 (42%), Gaps = 67/319 (21%)
Query: 133 LPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQAT------RHARRVYVGGLPPLA 186
LPG P A P M P ++L AF + P A + ++R+YV LP
Sbjct: 228 LPGAPRAAP-----MDP---SKLAAF-MTPSAGSASSAALAPSAAKQSKRLYVHNLPSGV 278
Query: 187 NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIF 246
+ + + FF+ + G N D ++ I K++A +E +T E+A+ A+A++GI
Sbjct: 279 SSEELMEFFNLQLN--GLNVVSGQDPCLSAQIATSKEYAALEFKTPEDATVALAMNGISM 336
Query: 247 -------EGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFV 299
+ + +RRP DY P+ + N S + + P+++ +
Sbjct: 337 REESGGPDRSGLSIRRPKDYI----------TPTADDNAYTGDEVSSVV--KDSPNKLSI 384
Query: 300 GGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL 359
+P Y E Q++EL+ + G L F LVKD T +G FC Y D + D LN +
Sbjct: 385 VNIPTYIEEEQVRELVGTMGKLKAFVLVKDESTDQHRGIAFCEYADNEIVDAVIEGLNDI 444
Query: 360 KMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETL 419
+GD L V RAT + +Q QT+G++ G +S+
Sbjct: 445 PLGDGNLKVTRAT--------------------VGLQ----QTAGLDGGVGAISMLAGAS 480
Query: 420 A-------KVLCLTEMMKS 431
A +V+CL M+ S
Sbjct: 481 AAENREHSRVICLMNMVTS 499
>gi|432090458|gb|ELK23883.1| Splicing factor U2AF 65 kDa subunit [Myotis davidii]
Length = 423
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 56/78 (71%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY FC Y D VTD A A
Sbjct: 263 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 322
Query: 356 LNGLKMGDKTLTVRRATA 373
LNG+++GDK L V+RA+
Sbjct: 323 LNGMQLGDKKLLVQRASV 340
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 17/108 (15%)
Query: 194 FFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRV 253
FF+ M +GG + PG+ V+ V IN +K FAF+E R+V+E + AMA G ++++
Sbjct: 4 FFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMA-------GQSLKI 55
Query: 254 RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGG 301
RRP DY P PG S N ++ G+ S + + ++F+GG
Sbjct: 56 RRPHDYQPL------PGM-SENPSVYVPGVVSTVV--PDSAHKLFIGG 94
>gi|340520531|gb|EGR50767.1| predicted protein [Trichoderma reesei QM6a]
Length = 539
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 138/322 (42%), Gaps = 56/322 (17%)
Query: 107 KSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP ++ A + G LPG P P T+L AF P
Sbjct: 160 RKRRLTQWDIKPPGYDLVTAEQAKLSGMFPLPGAP--------RQQPMDPTKLQAFMTQP 211
Query: 163 V-QV----MTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY 217
QV + +R A+R+ V +P E+A+ FF+ + G N D V
Sbjct: 212 GGQVSSAGLKASNSRQAKRLLVYNVPSGVTEEALIAFFNLQLN--GLNVIETPDPCVLCQ 269
Query: 218 INHEKKFAFVEMRTVEEASNAMALDGIIFE------GVA------VRVRRPTDYNPTLAA 265
+ +K FA VE R +A+ A+ALDGI E G A + +RRP DY
Sbjct: 270 FSSDKTFAVVEFRNASDATVALALDGITMEADDAQNGTANGGSHGLDIRRPKDY------ 323
Query: 266 ALGPGQPSPNLNLAAVGLASGAIGGAEGPD---RVFVGGLPYYFTETQIKELLESFGTLH 322
+ PG P + I PD ++ + +P + E QI ELL +FG
Sbjct: 324 -VMPGIPD------DIPYDPEVISNVV-PDTVHKLCITNIPTFLNEEQIIELLAAFGKPK 375
Query: 323 GFDLVKDRDTGNSKGYGFCVYQDP-AVTDIACAALNGLKMGDKTLTVRRATASSGQSKTE 381
F LVKDR T S+G F Y DP + + A +LNG+ + K L V +A+ Q
Sbjct: 376 SFVLVKDRSTEESRGIAFTEYLDPSSANEPALNSLNGMDVAGKKLKVTKASIGPTQVANF 435
Query: 382 QESILAQAQQHIAIQKMALQTS 403
I AI +A QTS
Sbjct: 436 DVGI-------TAISGLASQTS 450
>gi|357114131|ref|XP_003558854.1| PREDICTED: uncharacterized protein LOC100840355 [Brachypodium
distachyon]
Length = 840
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPG-DAVVNVYINHEKK 223
V QATR RR+++ LP A+E + + + N ++ IN EK
Sbjct: 327 VQLTQATRPLRRLHIENLPSSASEDMLIGCLNDFFLSSDVNHIQKSKQPCLSCTINKEKH 386
Query: 224 FAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGL 283
AFVE T E+A+ A++ DG F G A+++RRP +Y + P + + L
Sbjct: 387 QAFVEFLTPEDATAALSFDGRSFNGSALKIRRPKEY-------IEMANVVPKKTVEEIKL 439
Query: 284 ASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343
AS A+ P ++FV G+ + + E++ SFG L + +D + + + F Y
Sbjct: 440 ASDV---ADSPHKIFVAGISGVISSEMLMEIVSSFGQLAAYRF-QDHEALSGRC-AFLEY 494
Query: 344 QDPAVTDIACAALNGLKMGDKTLT 367
D ++TD ACA LNG+K+G LT
Sbjct: 495 IDHSITDKACAGLNGMKLGGCILT 518
>gi|169602913|ref|XP_001794878.1| hypothetical protein SNOG_04461 [Phaeosphaeria nodorum SN15]
gi|160706286|gb|EAT88221.2| hypothetical protein SNOG_04461 [Phaeosphaeria nodorum SN15]
Length = 594
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 136/306 (44%), Gaps = 43/306 (14%)
Query: 94 NRSKSLSPSRSP-----SKSKRRSGFDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMA 144
N+++ +P +P + +R + +D+ P + A + G LPG P A P
Sbjct: 187 NKAREPTPDLAPFTNILKRERRMTQWDIKPAGYENITAEQAKLSGMFPLPGAPRAAP--- 243
Query: 145 QNMLPFGATQLGAF-----PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVM 199
M P ++L AF + A++ ++R+YV LP + + FF+ +
Sbjct: 244 --MDP---SKLAAFMSPSAGTASAAALAPGASKQSKRLYVHNLPSGTTSEELLEFFNLQL 298
Query: 200 TAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIF-------EGVAVR 252
G N D ++ I K +A +E +T E+A+ A+A+ GI + +
Sbjct: 299 N--GLNVVSGQDPCLSAQIASSKTYAALEFKTPEDATVALAMSGISMRDDGGGPDRSGLS 356
Query: 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIK 312
+RRP DY PS + N S + + P+++ + +P + E QI+
Sbjct: 357 IRRPKDYI----------TPSADENAYPGDEVSSVV--KDSPNKLSIVNIPTFIEEEQIR 404
Query: 313 ELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
EL+E+ G L+ F LVKD + +G FC Y D V + LN + +G+ L V RAT
Sbjct: 405 ELVETMGKLNAFVLVKDISSEQHRGIAFCEYADNEVVNAVIEGLNDITLGEGNLKVSRAT 464
Query: 373 ASSGQS 378
Q+
Sbjct: 465 VGMQQN 470
>gi|5822501|pdb|2U2F|A Chain A, Solution Structure Of The Second Rna-Binding Domain Of
Hu2af65
Length = 85
Score = 95.9 bits (237), Expect = 3e-17, Method: Composition-based stats.
Identities = 45/80 (56%), Positives = 57/80 (71%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY FC Y D VTD A A
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 62
Query: 356 LNGLKMGDKTLTVRRATASS 375
LNG+++GDK L V+RA+ +
Sbjct: 63 LNGMQLGDKKLLVQRASVGA 82
>gi|156085070|ref|XP_001610018.1| RNA recognition motif (RRM)-containing protein [Babesia bovis]
gi|154797270|gb|EDO06450.1| RNA recognition motif (RRM)-containing protein [Babesia bovis]
Length = 383
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 95/207 (45%), Gaps = 33/207 (15%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAG----PGDAVVNVYINHEKKFAFV 227
RH RR+Y+G LP +A+ F S + +S P + ++ N ++ + F+
Sbjct: 57 RH-RRLYIGNLPSGTTYKALVEFLSAALRLPNDDSGQTVQVPHISKTEIF-NEDQGYCFL 114
Query: 228 EMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGA 287
E T E A LDGI F+G +++RRP DY T ++
Sbjct: 115 EFSTPELADACFKLDGINFKGKLLKIRRPIDYGTTSSSE--------------------- 153
Query: 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
+VFV +P +E ++KELLE G + +LVKD TG +KGYGF + D
Sbjct: 154 ------DTKVFVQNIPPTMSEAEVKELLEKHGKIKSSNLVKDLKTGQNKGYGFFEFDDSR 207
Query: 348 VTDIACAALNGLKMGDKTLTVRRATAS 374
+A LNG +G L+V+ A S
Sbjct: 208 AAKMAVCHLNGHIIGKNVLSVKHAAFS 234
>gi|302916595|ref|XP_003052108.1| hypothetical protein NECHADRAFT_38412 [Nectria haematococca mpVI
77-13-4]
gi|256733047|gb|EEU46395.1| hypothetical protein NECHADRAFT_38412 [Nectria haematococca mpVI
77-13-4]
Length = 564
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 140/321 (43%), Gaps = 43/321 (13%)
Query: 79 RHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRR-SGFDMAPPAAAMLPG--AAVPGQ--L 133
RH +R + + R + L+ + KRR + +D+ PP + A + G L
Sbjct: 127 RHENRRSASPPPKKREPTPDLTNIVPILERKRRLTQWDIKPPGYDNVTAEQAKLSGMFPL 186
Query: 134 PGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQ-----QATRHARRVYVGGLPPLANE 188
PG P P ++L AF P +T +R ++R+ V +P +E
Sbjct: 187 PGAP--------RQQPMDPSKLQAFMNQPGGQVTSAGLKANNSRQSKRLLVSKIPSGTSE 238
Query: 189 QAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFE- 247
+A+ +FF+ + G N D + ++++ FA +E R EA+ A+ALDG E
Sbjct: 239 EALISFFNLQLN--GLNVIDATDPCILCQFSNDRSFAVLEFREASEATVALALDGTSMEP 296
Query: 248 ----------GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRV 297
+ +RRP DY + A +P++ + I +++
Sbjct: 297 DDANGASNGESRGLEIRRPRDY--VVPAVTEEVSYNPDV---VSNIVPDTI------NKL 345
Query: 298 FVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDP-AVTDIACAAL 356
+ +P + E Q+ ELL +FG F LVKDR T S+G F YQDP A A L
Sbjct: 346 CITNIPPFLAEDQVIELLAAFGKPKAFVLVKDRGTEESRGIAFAEYQDPNAANPTALDTL 405
Query: 357 NGLKMGDKTLTVRRATASSGQ 377
NG+ +G K L V +A+ Q
Sbjct: 406 NGMDVGGKKLKVTKASIGPTQ 426
>gi|312372039|gb|EFR20089.1| hypothetical protein AND_20681 [Anopheles darlingi]
Length = 384
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 86/159 (54%), Gaps = 12/159 (7%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P V V+ TR ARR+YVG +P E+ + FF+Q M + G + G+ V+ I
Sbjct: 126 PQAAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQM-HLSGLAQAAGNPVLACQI 184
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQ---PSPN 275
N +K FAF+E R+++E + AMA D I F+G ++++RRP DY P PG + N
Sbjct: 185 NLDKNFAFLEFRSIDETTQAMAFDSINFKGQSLKIRRPHDYQPM------PGMTDSATVN 238
Query: 276 LNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKEL 314
+ G+ S + + ++F+GGLP Y E Q+ L
Sbjct: 239 VPEKFSGVISTVV--PDSAHKIFIGGLPNYLNEDQVPGL 275
>gi|325179530|emb|CCA13927.1| splicing factor U2af large subunit putative [Albugo laibachii Nc14]
Length = 833
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 107/253 (42%), Gaps = 59/253 (23%)
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEM 229
A + AR +YVG LP + F ++ +G S PG+ +++V+I+ + FAF EM
Sbjct: 467 AMKPARELYVGNLPATITGPQLQEFLGTIIQQVGL-STQPGNPILSVWISTDGHFAFCEM 525
Query: 230 RTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP-----------NLNL 278
R+VEE + A+ L+ + G ++ RP + +GP QP P NL
Sbjct: 526 RSVEECNLALLLNQLPLLGQPLKFGRPRSF-------MGPPQPMPIVSARTQTALVNLGC 578
Query: 279 A--------------------------------------AVGLASGAIGGAEGPD--RVF 298
A LA P+ ++
Sbjct: 579 TPNPVWFASPDVTSFGSDPMGFGNGLNGFLSSSSSSLMSATALADSLASLPSDPNATQLL 638
Query: 299 VGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG 358
+ +P E Q+KEL++ FG L F L+KD TG S G F YQ+ VT A L+G
Sbjct: 639 MSNIPGVLAEEQVKELVQPFGELRFFKLIKDPITGQSTGTAFFEYQENQVTTEALNGLDG 698
Query: 359 LKMGDKTLTVRRA 371
L +G L+VRRA
Sbjct: 699 LDIGGVKLSVRRA 711
>gi|213408691|ref|XP_002175116.1| splicing factor U2AF subunit [Schizosaccharomyces japonicus yFS275]
gi|212003163|gb|EEB08823.1| splicing factor U2AF subunit [Schizosaccharomyces japonicus yFS275]
Length = 511
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 117/274 (42%), Gaps = 16/274 (5%)
Query: 109 KRRSGFDMAPPAAAMLPG--AAVPG--QLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQ 164
++RS +DM PP + A + G LPG P + + + F + G+
Sbjct: 120 RKRSMWDMKPPGYENVTADQAKMSGLFPLPGAPRSATADPEKLAAFARSTAGSIIAP-PP 178
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF 224
+ A+R ARR+ V LP + + F + ++ + V +Y +++
Sbjct: 179 PIQPGASRQARRLKVKELPAEFEVEDLKNVFEESISTSSFHKDRDTKHVTAIYPCKTERY 238
Query: 225 AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDY-NPTLAAALGPGQPSPNLNLAAVGL 283
A +E+ T E+A+ + F+ V + R Y P +++ + +P +LN +
Sbjct: 239 AIIELATPEDATFIWGARKLKFKNETVLIDRLEGYIVPQISSEVAQKRPKNDLNQKVLDS 298
Query: 284 ASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343
A D+V++G LP Y E QI ELL+ FG L L K+ S+GY FC Y
Sbjct: 299 A----------DKVYIGSLPLYLNEDQISELLKPFGELQSLFLAKNSADMTSRGYAFCEY 348
Query: 344 QDPAVTDIACAALNGLKMGDKTLTVRRATASSGQ 377
A LN ++ GD L V+ A Q
Sbjct: 349 ISSESATAAVQGLNNMEFGDTRLMVQFACVGIQQ 382
>gi|428671645|gb|EKX72563.1| conserved hypothetical protein [Babesia equi]
Length = 455
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 91/176 (51%), Gaps = 17/176 (9%)
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEM 229
ATR R +YVG +PP+++ + F ++ + AI G S PG+ + +I+ + +AF+E+
Sbjct: 72 ATRPYREIYVGNIPPVSDVSTLLDFLNEALIAINGTSM-PGNPCLKGWISSDSHYAFIEL 130
Query: 230 RTVEEASNAMALDGIIFEGVAVRVRRPTDYNP-TLAAALGPGQPSPNLNLAAVGL----- 283
RT+EEASN M L G+ G +RV RP Y P LA A P P+ + +L A+GL
Sbjct: 131 RTMEEASNCMQLTGLNCMGYNIRVNRPKTYTPEMLALAPSPTVPTLDPSLLAMGLKALKN 190
Query: 284 ------ASGAIGGAEG----PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD 329
A+ I E DR+ + +P ++ +K +E+ G + + D
Sbjct: 191 AREQIVAASDILATEKAKAMTDRLCIIDIPSETQDSDLKSAIEAIGQVKYIHFIND 246
>gi|413956976|gb|AFW89625.1| hypothetical protein ZEAMMB73_282398 [Zea mays]
Length = 635
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 125/275 (45%), Gaps = 23/275 (8%)
Query: 102 SRSPSK-----SKRRSGFDMAPPAA--AMLPGAAVP--GQLPGVPSAVPEMAQNMLPFGA 152
+++PSK K+ + +D P A + P +P GQ+ P + + ++
Sbjct: 53 TKTPSKVIQSPEKKSATWDQPPVKANQSNFPTTFLPTVGQMAPTPFSF-SVIKDPSTTAV 111
Query: 153 TQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDA 212
T L L V QATR RR+++ LP A E + + + + G
Sbjct: 112 TMLAGNSLTADSVQLTQATRPLRRLHIENLPDSATEDKLIDCLNDFLLSTGSKLQR-SKP 170
Query: 213 VVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP 272
++ IN EK+ AFVE T E+A+ A++ DG G +R+RRP +Y T+ +
Sbjct: 171 CLSCTINREKRQAFVEFLTPEDATAAISFDGRSLNGSVLRIRRPKEYVETVNVTPKKAEE 230
Query: 273 SPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
+ L S + A+ P ++F+ G+ + + E++ +FG L + + + +
Sbjct: 231 T--------ALISDVV--ADSPYKIFIAGIAGVISSKMLMEIVSAFGPLAAYRFLFNNEL 280
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367
G F Y D +VT ACA LNG+ +G + LT
Sbjct: 281 GGP--CAFLEYADRSVTSKACAGLNGMMLGGRVLT 313
>gi|159163083|pdb|1U2F|A Chain A, Solution Structure Of The First Rna-Binding Domain Of
Hu2af65
Length = 90
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Query: 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVE 233
ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN +K FAF+E R+V+
Sbjct: 1 ARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVD 59
Query: 234 EASNAMALDGIIFEGVAVRVRRPTDYNP 261
E + AMA DGIIF+G ++++RRP DY P
Sbjct: 60 ETTQAMAFDGIIFQGQSLKIRRPHDYQP 87
>gi|428172624|gb|EKX41532.1| hypothetical protein GUITHDRAFT_112506 [Guillardia theta CCMP2712]
Length = 514
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 63/109 (57%), Gaps = 16/109 (14%)
Query: 169 QATRHARRVYVGGLP---PLANEQAIATFFSQVMTAI-------------GGNSAGPGDA 212
Q T ARRVYVG LP P +E A+ FF Q M + G + PG
Sbjct: 133 QLTLKARRVYVGNLPQLDPPISEPALKEFFDQAMHQVQDQGAYFKAEFAQAGLTQSPGCC 192
Query: 213 VVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNP 261
V +V+I+ EK FAF+E+RTV+EA++AM LDGI F G +RV RP DY P
Sbjct: 193 VCDVWISSEKHFAFIEVRTVQEATSAMTLDGITFYGTPLRVNRPHDYVP 241
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 69/132 (52%), Gaps = 6/132 (4%)
Query: 169 QATRHARRVYVGGLPPLANEQA-IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFV 227
Q T+ ARR++VG L + A + F SQ M + PGD ++ +++ + F FV
Sbjct: 272 QQTKKARRIHVGNLLVGSMTSASLKQFISQSMQQLS-LVVKPGDPCIDSFLSGDGNFGFV 330
Query: 228 EMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL---AAVGLA 284
EMRTV EA+NAMAL GI G +RV RP DY P A + Q + L A V A
Sbjct: 331 EMRTVAEANNAMALSGIECNGRPIRVGRPADYVPLNAELIAQCQGTGILGTPGDAGVTEA 390
Query: 285 SGAIGGAEGPDR 296
GA G GPD
Sbjct: 391 VGA-GMLNGPDE 401
>gi|399216014|emb|CCF72702.1| unnamed protein product [Babesia microti strain RI]
Length = 487
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 134/297 (45%), Gaps = 36/297 (12%)
Query: 81 RHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAV 140
R R +SDR R R S S ++R FD +PP A P G + G +
Sbjct: 57 RGRDIDRASDRSRFR-------HSDSYDRKRFKFD-SPPKQA--PKEGFGGGVLGYVDGI 106
Query: 141 PEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMT 200
P + + G F ++TR +R++ + PP + I +F+ M
Sbjct: 107 PVQGKRHIIMQTCLFGIF------YSEAESTRFSRQLEISNTPPNIEVEVIIEYFNMAML 160
Query: 201 AIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYN 260
A+GGN A+ + +++K +EMRT+EE SNA+ L+G+ G ++ + R +
Sbjct: 161 AVGGNCLPGNPAIRGKHNSNDKTSITIEMRTLEETSNALQLNGLNLMGKSLSITRVGNCP 220
Query: 261 PT-LAAALGPGQPSPNLNLAAVG-----------LASGAI----GGAEGPDRVFVGGLPY 304
P + A P P+ + ++ A+G L S AI GGA DR+ + LP
Sbjct: 221 PEYINKAPPPTVPTISPSILALGVNGLQSADIKPLLSNAITSLVGGAPKTDRLLILDLPI 280
Query: 305 YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM 361
+E QIK ++E FG L L K+ D ++ G C+ + T++ AL +++
Sbjct: 281 TQSEDQIKSMVEEFGKLKYIQLFKNADDTSA---GMCLIEF-VDTNVQVEALQKMRL 333
>gi|346324367|gb|EGX93964.1| splicing factor u2af large subunit [Cordyceps militaris CM01]
Length = 583
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 130/287 (45%), Gaps = 40/287 (13%)
Query: 107 KSKRRSGFDMAPPA--AAMLPGAAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMP 162
+ +R + +D+ PP A A + G LPG P Q + P T+L A P
Sbjct: 197 RKRRMTQWDIKPPGYEAVTSEQAKMSGMFPLPGAPRQ-----QQVDP---TKLQALMNQP 248
Query: 163 V--QV----MTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV 216
QV + +R ARR+ V +P E A+ FF+ + + N D
Sbjct: 249 AGGQVSSAGLKANNSRQARRLLVSDIPSGTTEDALVAFFNLQLNGL--NVIEATDPCALC 306
Query: 217 YINHEKKFAFVEMRTVEEASNAMALDG--IIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
++++K FA +E + +A+ A+ALDG ++ + + +RRP DY + P P
Sbjct: 307 QLSNDKSFAVLEFKNTGDATVALALDGSSMVADTPGLSIRRPKDY-------VMPAVPDE 359
Query: 275 NLNLAAVGLASGAIGGAEGPD---RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD 331
+ V S ++ PD ++ + +P + TE Q+ ELL +FG F LVK+R
Sbjct: 360 IIFNPEV--VSNSV-----PDTIHKLCITNIPPFLTEDQVLELLAAFGKPKAFVLVKERS 412
Query: 332 TGNSKGYGFCVYQDPA-VTDIACAALNGLKMGDKTLTVRRATASSGQ 377
T S+G F Y +P + A LNG+ +G K L R+A Q
Sbjct: 413 TEESRGIAFAEYVEPTNANEPALNTLNGMDVGGKKLKARKACVGGTQ 459
>gi|118376950|ref|XP_001021657.1| hypothetical protein TTHERM_00151210 [Tetrahymena thermophila]
gi|89303423|gb|EAS01411.1| hypothetical protein TTHERM_00151210 [Tetrahymena thermophila
SB210]
Length = 554
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 97/204 (47%), Gaps = 21/204 (10%)
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFV 227
Q+ HA RVY+G +P + + + F + M GG PG+
Sbjct: 210 QKQYIHALRVYIGNIPDPVDVEDVCKFVFEQMANAGG-LLEPGNP--------------- 253
Query: 228 EMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGA 287
+R++EE S M LDGII++G ++R RRP D+ L G +P P L+ + +
Sbjct: 254 -LRSIEETSACMELDGIIYKGKSLRFRRPKDFG-VLQKVEG-TRPVPTLDKTKLKIVQTQ 310
Query: 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
+ +++ + LP F+E + +LL ++G L F L D+ T SKG+ FC +
Sbjct: 311 VENTY--NKLQIMNLPENFSEEHVMQLLLTYGDLKSFHLAVDKITSESKGFAFCEFITDR 368
Query: 348 VTDIACAALNGLKMGDKTLTVRRA 371
T L+G ++ +K + V+R
Sbjct: 369 STVECLNKLSGQQILNKVINVKRC 392
>gi|342873171|gb|EGU75391.1| hypothetical protein FOXB_14096 [Fusarium oxysporum Fo5176]
Length = 661
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 163/412 (39%), Gaps = 107/412 (25%)
Query: 49 RDKNYKYDREGIRDHDRTDRHRDYNRDKERRHRHRSRSH-SSDRFRNRSKSLS------- 100
R ++ R G D D R++ RD+ER R+ R DR +R + S
Sbjct: 60 RSPEHRSHRRGEGDVDAYSSSRNH-RDREREDRYSGRERRGGDREWDRDRGSSRRDARRD 118
Query: 101 ----PSRS--------------------PSKSKRRSG----------------------- 113
P+R P++ +RRS
Sbjct: 119 DDERPNRRDRDPYEDRRRGGRDRREDRFPAQQERRSASPPPKKREPTPDLTNIVPVLDRK 178
Query: 114 -----FDMAPPAAAMLPG--AAVPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQ 164
+D+ PP + A + G LPG P P ++L AF P
Sbjct: 179 RRLTQWDIKPPGYENVTAEQAKLSGMFPLPGAP--------RQQPMDPSKLQAFMNQPGG 230
Query: 165 VMTQ-----QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN 219
+T +R ++R+ V +P +E+A+ +FF+ + G N D V +
Sbjct: 231 QVTSAGLKANNSRQSKRLLVSRIPSGTSEEALMSFFNLQLN--GLNVIDTTDPCVLCQFS 288
Query: 220 HEKKFAFVEMRTVEEASNAMALDGIIFEGV-----------AVRVRRPTDYNPTLAAALG 268
+++ FA +E + EA+ A+A+DGI E + +RRP DY + A+
Sbjct: 289 NDRSFAVIEFKDAPEATVALAMDGISMEASDASNGTDGGHRGLEIRRPRDY---VVPAV- 344
Query: 269 PGQPSPNLNLAAVGLASGAIGGA--EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326
V S + + +++ + +P + TE QI ELL SFG F L
Sbjct: 345 ---------TEEVSYDSEVVSNIVPDTVNKLSITNIPTFLTEEQIIELLASFGKPKAFVL 395
Query: 327 VKDRDTGNSKGYGFCVYQDPAVTD-IACAALNGLKMGDKTLTVRRATASSGQ 377
VKDR T S+G F YQDPA ++ A LNG+++G K L V +A+ Q
Sbjct: 396 VKDRGTEESRGIAFAEYQDPAASNPTALDTLNGMEIGGKKLKVSKASIGPTQ 447
>gi|297823139|ref|XP_002879452.1| hypothetical protein ARALYDRAFT_321074 [Arabidopsis lyrata subsp.
lyrata]
gi|297325291|gb|EFH55711.1| hypothetical protein ARALYDRAFT_321074 [Arabidopsis lyrata subsp.
lyrata]
Length = 497
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 120/281 (42%), Gaps = 59/281 (20%)
Query: 96 SKSLSPSRSPSKSKRRSGFDMAPPAAA-MLPGAAVPGQLPGVPSAVPEMAQ-NMLPFGAT 153
+K++SP + S K+ + +D+AP + M G G +A P +++ +++
Sbjct: 132 TKAVSPP-NLSSEKKSAKWDLAPTVTSGMFSGPVFSGLQAATQTAYPTISEASLMLLKPL 190
Query: 154 QLGAFPLMPVQVMTQ-------QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNS 206
G F P + +T ++TR RR+Y +P A+E+++ F+ M + G N
Sbjct: 191 MEGTFRTPPPRQITSFDSVQLTESTRPMRRLYAENVPDSASEKSLIECFNGYMLSSGSNH 250
Query: 207 AGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAA 266
+ ++ IN EK A VE T ++AS A++LDG F G +++RRP DY
Sbjct: 251 IKGSEPCISCIINKEKSQALVEFLTPQDASAALSLDGCSFAGSNLKIRRPKDY------- 303
Query: 267 LGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326
VG T + E++ FG L +
Sbjct: 304 --------------VG--------------------------TTLMEIVSVFGPLKAYRF 323
Query: 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367
V + D Y Y D +VT ACA LNG+K+G +T
Sbjct: 324 VSNNDLNQQCAY--LEYTDGSVTLKACAGLNGMKLGGSVIT 362
>gi|403224363|dbj|BAM42493.1| splicing factor [Theileria orientalis strain Shintoku]
Length = 377
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 96/207 (46%), Gaps = 31/207 (14%)
Query: 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVN---VYINHEKKF 224
++ + +R+Y+G LP + FF+ + A+ ++ D +V+ +Y N E+ +
Sbjct: 47 EENKKRQKRLYIGNLPAGMKLGDVVEFFNGALLAMVPSNQTTKDPLVSKTEIY-NPEQGY 105
Query: 225 AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLA 284
F+E +T E A LDGI G ++++RRP D+
Sbjct: 106 CFLEFKTPELTDLAFKLDGITCNGYSLKIRRPIDFTQ----------------------- 142
Query: 285 SGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQ 344
G ++F+ + TE +++ELLE G L F+L+KD TG SKGYGF Y+
Sbjct: 143 ----GNQLEDTKIFIQNVATDVTEAELRELLEKHGKLKLFNLIKDPITGASKGYGFFEYE 198
Query: 345 DPAVTDIACAALNGLKMGDKTLTVRRA 371
D +A LNG + L+V+ A
Sbjct: 199 DSRSAKMAVLHLNGQALKQNVLSVKHA 225
>gi|294954867|ref|XP_002788334.1| U2 small nuclear ribonucleoprotein, auxiliary factor, large
subunit, putative [Perkinsus marinus ATCC 50983]
gi|239903646|gb|EER20130.1| U2 small nuclear ribonucleoprotein, auxiliary factor, large
subunit, putative [Perkinsus marinus ATCC 50983]
Length = 543
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 6/191 (3%)
Query: 186 ANEQAIATFFSQVMTAIGGN--SAGPGDAVVNVYI---NHEKKFAFVEMRTVEEASNAMA 240
+++Q++ FF + A+ GN P VV+V+ + + A VE RT A+ AM
Sbjct: 113 SSQQSVMDFFKGALFAVTGNGGKTTPLHPVVSVFFLISDGHSRTALVEFRTPIAATVAMR 172
Query: 241 LDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPD-RVFV 299
L+GI +G + + RP YN + + + + + S A G + ++ +
Sbjct: 173 LNGIDLDGRKLAITRPHGYNKEDPSKSITAEDIQKVTIEELCGGSSTKKTAPGSNLQLGI 232
Query: 300 GGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL 359
LP TET +++LLE FG L L++D+ TG SKGYGFC ++DP D AL+
Sbjct: 233 YHLPPVMTETYLRDLLEQFGALTMVSLIRDKTTGLSKGYGFCQFEDPNDADRCLYALDQF 292
Query: 360 KMGDKTLTVRR 370
+G+ +L+V R
Sbjct: 293 VLGNYSLSVTR 303
>gi|294876942|ref|XP_002767845.1| splicing factor u2af large subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239869760|gb|EER00563.1| splicing factor u2af large subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 220
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 100/198 (50%), Gaps = 6/198 (3%)
Query: 186 ANEQAIATFFSQVMTAIGGN--SAGPGDAVVNVYI---NHEKKFAFVEMRTVEEASNAMA 240
+++Q++ FF + A+ GN P VV+V+ + + A VE RT A+ AM
Sbjct: 16 SSQQSVMDFFKGALFAVTGNGGKTTPLHPVVSVFFLISDGHSRTALVEFRTPIAATVAMR 75
Query: 241 LDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPD-RVFV 299
L+GI +G + + RP YN + + + + + S A G + ++ +
Sbjct: 76 LNGIDLDGRKLAITRPHGYNKEDPSKSITAEDIQKVTIEELCGGSSTKKTAPGSNLQLGI 135
Query: 300 GGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL 359
LP TET +++LLE FG L L++D+ TG SKGYGFC ++DP D AL+
Sbjct: 136 YHLPPVMTETYLRDLLEQFGALTMVSLIRDKTTGLSKGYGFCQFEDPNDADRCLYALDQF 195
Query: 360 KMGDKTLTVRRATASSGQ 377
+G+ +L+V R + Q
Sbjct: 196 VLGNYSLSVTRLVPDAQQ 213
>gi|320590609|gb|EFX03052.1| splicing factor u2af large subunit [Grosmannia clavigera kw1407]
Length = 420
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 97/212 (45%), Gaps = 36/212 (16%)
Query: 226 FVEMRTVEEASNAMALDGIIFEG--------VAVRVRRPTDYNPTLAAALGPGQPSPNLN 277
VE + +A+ A+AL+GI E + ++RP DY P
Sbjct: 1 MVEFKEPIDATVALALNGISMEAEDASGSGQSGLSIQRPKDYIVPAVVDYSVYHP----- 55
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
G+ S + + P ++ + +P Y ++ Q+ ELL SFG L F L+KDR T S+G
Sbjct: 56 ----GVVSNVV--IDTPFKIAITNIPSYLSDEQVTELLVSFGELRAFVLLKDRSTEESRG 109
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQK 397
FC Y +P TD+A LNG+ +GD+ L V++A+ Q +
Sbjct: 110 VAFCEYTEPQSTDVAIQGLNGMDLGDRKLRVQKASIGITQ-----------------VTS 152
Query: 398 MALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ + + M+ L G +S +++V+ L M+
Sbjct: 153 VEMGVNAMSLLAGTISQEASDVSRVVQLLNMV 184
>gi|156086444|ref|XP_001610631.1| hypothetical protein [Babesia bovis T2Bo]
gi|154797884|gb|EDO07063.1| conserved hypothetical protein [Babesia bovis]
Length = 400
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEM 229
AT+ R +Y+G +PP A+ + F + +TA+ G S PG+ +I+ + +AFVEM
Sbjct: 20 ATKPYREIYIGNIPPQADVNNLLEFLNDALTAVNGTSI-PGNPCQKGWISADSHYAFVEM 78
Query: 230 RTVEEASNAMALDGIIFEGVAVRVRRPTDYNP-TLAAALGPGQPSPNLNLAAVGLA 284
RT+EEASN + L GI + ++R+ RP YNP L A P P+ + +L A+G+A
Sbjct: 79 RTMEEASNCIQLSGINYMNYSLRINRPKTYNPEILTEAPSPTIPTLDPSLLALGIA 134
>gi|340500276|gb|EGR27170.1| splicing factor u2af large subunit, putative [Ichthyophthirius
multifiliis]
Length = 201
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 82/149 (55%), Gaps = 12/149 (8%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGG--NSAGPGDAVVNVYINHEKKFAFVEM 229
RHARR+Y+G +P N++ ++ + + + A GG +S + ++ I+ + KFAF+E+
Sbjct: 22 RHARRLYIGNIPDSINQEYLSEWLYRSLEAAGGLVDSLPNENPIIKCEIDSKGKFAFIEI 81
Query: 230 RTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL---AAVGLASG 286
RT+EE + + LDGII +R+RRPT+Y + P LNL +G+
Sbjct: 82 RTIEETTTLLQLDGIILWHRQLRIRRPTEYEK--FPQIYPNYNVKKLNLDLFKTIGIVII 139
Query: 287 AIGGAEGPDRVFVGGLPYYFTETQIKELL 315
+GP+++F+ LP TQ+ EL+
Sbjct: 140 PTVVDDGPNKIFLANLP-----TQMDELM 163
>gi|118390069|ref|XP_001028025.1| U2 snRNP auxilliary factor, splicing factor [Tetrahymena
thermophila]
gi|89309795|gb|EAS07783.1| U2 snRNP auxilliary factor, splicing factor [Tetrahymena
thermophila SB210]
Length = 480
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 120/255 (47%), Gaps = 18/255 (7%)
Query: 177 VYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEAS 236
+ V +P + + I FF+ +++ + A P VV V + +FA + M S
Sbjct: 130 LIVSDIPRMITDIEIKEFFNILISKLRPELAEPS-PVVKVDVMTNGQFATMHMSCKLAKS 188
Query: 237 NAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDR 296
A+ L G+ F+ + + +P Y + Q V + GA+ + ++
Sbjct: 189 FALTLRGVEFQKCKLMIEKPKQY--FFRMYMEKQQND----DVMVDVDDGALQQMQM-NK 241
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN---SKGYGFCVYQDPAVTDIAC 353
+++GGLP Y + +++L E+FG L F++ K ++ SKGY F Y+DP +T+ A
Sbjct: 242 IYMGGLPTYLKDIDVRKLCETFGKLKYFNVAKQQNENKEQVSKGYCFFEYEDPNITEKAI 301
Query: 354 AALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMS 413
ALNGL GD+ L V R T + Q+ Q++++ K+A + + LGG
Sbjct: 302 KALNGLPCGDRKLKVSRVTKDQNKLANTQQ---IQSEKN----KLAPSNNSGSFLGGSDL 354
Query: 414 LFGETLAKVLCLTEM 428
+ + K+L + E
Sbjct: 355 IRKDEFQKLLTIPEF 369
>gi|19112188|ref|NP_595396.1| U2AF large subunit (U2AF-59) [Schizosaccharomyces pombe 972h-]
gi|549144|sp|P36629.1|U2AF2_SCHPO RecName: Full=Splicing factor U2AF 59 kDa subunit; AltName: Full=U2
auxiliary factor 59 kDa subunit; Short=U2AF59; AltName:
Full=U2 snRNP auxiliary factor large subunit
gi|410322|gb|AAA03578.1| splicing factor U2AF large subunit [Schizosaccharomyces pombe]
gi|5441489|emb|CAB46760.1| U2AF large subunit (U2AF-59) [Schizosaccharomyces pombe]
Length = 517
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 124/256 (48%), Gaps = 18/256 (7%)
Query: 109 KRRSGFDMAPPAAAMLPG--AAVPG--QLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQ 164
++RS +D+ PP ++ A + G LPG P A + +L F + G+ + P
Sbjct: 130 RKRSLWDIKPPGYELVTADQAKMSGVFPLPGAPRAAVTDPEKLLEFARSAEGSI-IAPPP 188
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF 224
+ A+R ARR+ V G+P E A +F + + + +V + E+ F
Sbjct: 189 PLQPGASRQARRLVVTGIPNEFVEDAFVSFIEDLFISTTYHKPE-TKHFSSVNVCKEENF 247
Query: 225 AFVEMRTVEEASNAMALDGIIFEG-VAVRVRRPTDYNPTLAAALGPGQPSPNLNLA-AVG 282
A +E+ T E+A+ L + V ++ +R +Y + P Q +P ++ +
Sbjct: 248 AILEVATPEDATFLWGLQSESYSNDVFLKFQRIQNY-------IVP-QITPEVSQKRSDD 299
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
A + + D++++ LP E Q+ ELL+ FG L F L+K+ G+SKG+ FC
Sbjct: 300 YAKNDV--LDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCE 357
Query: 343 YQDPAVTDIACAALNG 358
+++P+ ++A + L+G
Sbjct: 358 FKNPSDAEVAISGLDG 373
>gi|356536627|ref|XP_003536838.1| PREDICTED: uncharacterized protein LOC100810537 [Glycine max]
Length = 735
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 123/321 (38%), Gaps = 85/321 (26%)
Query: 104 SPSKS-----------------KRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQN 146
SP K K+R+G+D+ PPA P A V P AV +
Sbjct: 182 SPRKRKSEAAAKTPSPSKHSLEKKRAGWDL-PPAGTNNPSAVVSSSFPVSNCAVLSNMHD 240
Query: 147 MLPFGATQLGAFPLMPV---------------QVMTQQATRHARRVYVGGLPPLANEQAI 191
++ + L +PV V QATR RR+Y+ LP A+E+A+
Sbjct: 241 VVSTSSLDLALVKPLPVSFPSDVSTGKNTNIDSVQLTQATRPIRRLYLENLPASASEKAV 300
Query: 192 ATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251
F+ ++ + N + ++ +K A VE T ++AS A++ DG + G V
Sbjct: 301 MDCFNNLLLSARVNHIQQAQPCICCILHKDKGQALVEFLTADDASAALSFDGSMLFGSIV 360
Query: 252 RVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQI 311
++RRP DY + I G VF G L Y ET++
Sbjct: 361 KIRRPKDYIELM-----------------------EIAG------VF-GSLKAYHFETKV 390
Query: 312 KELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
N+ F Y D +VT ACA LNG+K+G + LTV +A
Sbjct: 391 ----------------------NNGPCAFLEYVDHSVTIKACAGLNGMKLGGEVLTVLQA 428
Query: 372 TASSGQSKTEQESILAQAQQH 392
+ + ES+ +H
Sbjct: 429 MPDASPLENAGESLSYGVPEH 449
>gi|297801306|ref|XP_002868537.1| hypothetical protein ARALYDRAFT_355725 [Arabidopsis lyrata subsp.
lyrata]
gi|297314373|gb|EFH44796.1| hypothetical protein ARALYDRAFT_355725 [Arabidopsis lyrata subsp.
lyrata]
Length = 1370
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 121/289 (41%), Gaps = 40/289 (13%)
Query: 96 SKSLSPSRSPSKSKRRSGFDMAPPA-AAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
+K++SP + S K+ + +D+AP AAM G+ G +A P ++ L
Sbjct: 815 AKAVSPP-NLSSEKKSAKWDLAPAVTAAMFSGSVFSGLQAAAQTAYPTNSEASLTLLKPL 873
Query: 155 LGAFPLMPV--------QVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNS 206
+ A P V ++TR RR+Y + A+E+++ F+ M + G N
Sbjct: 874 MEAPFRTPSAREITSVDSVQLTESTRRMRRLYAENVSDSASEKSLIECFNSYMLSSGSNH 933
Query: 207 AGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAA 266
+ ++ IN EK A VE T +AS A++LDG F G+ +++RRP Y T
Sbjct: 934 IKGSEPCISCIINKEKSQALVEFLTPHDASAALSLDGCSFAGLNLKIRRPKGYVETTGVY 993
Query: 267 LG-------PGQPS----------PNLNLAAVGLASGAIGGAE------------GPDRV 297
+G G + A+ + SG + E +++
Sbjct: 994 VGYVIIHIQEGDEAVCYVMVTIHEAGFQTVAIFMQSGELAKKEPATNAISDNVKDSSNKI 1053
Query: 298 FVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDP 346
F+GG P + + E++ FG L + V + D N + V ++P
Sbjct: 1054 FIGGFPKSISSEMLMEIVSVFGPLKAYRFVINNDL-NKRCAFLEVNENP 1101
>gi|449689952|ref|XP_004212193.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like, partial [Hydra
magnipapillata]
Length = 210
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 83/170 (48%), Gaps = 29/170 (17%)
Query: 102 SRSPSKSKRRSGFDMAPPA---------AAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGA 152
S S KSKR + +D+ P A+ V P SAVP ++ LP GA
Sbjct: 46 SHSVPKSKRNTLWDVPPKGYEDITPVQFKALRAAGKVEVANPVCGSAVPAVS---LPQGA 102
Query: 153 TQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDA 212
Q T ARR+Y+G +P +E + FF+ M + PG+
Sbjct: 103 ----------------QTTWQARRIYLGNIPFGISEDLMVDFFNAKMRE-SDIARQPGNP 145
Query: 213 VVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPT 262
V+ IN EK FAF+E R+VEE + AMA DGI+ +G A+++RRP DY P
Sbjct: 146 VLACQINLEKNFAFLEFRSVEETTLAMAFDGIMLQGQALKIRRPKDYQPI 195
>gi|358391563|gb|EHK40967.1| hypothetical protein TRIATDRAFT_135674 [Trichoderma atroviride IMI
206040]
Length = 558
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 172/419 (41%), Gaps = 80/419 (19%)
Query: 33 RDRHHRDFKSGG-------DDRRRDKNYKYDREGIRDHDRTDRHRDYNRDKERRHRHRSR 85
RDR D S D R +Y+ D D + R RD D+ R R R
Sbjct: 66 RDREREDRYSSARDRRGDRDWDRDRGSYRRDARRDDDERPSRRERDPYDDRRRGGRDRRD 125
Query: 86 SHSSDRFRNRSKSLSPS----RSPS-----------KSKRRSGFDMAPPAAAMLPG--AA 128
+ + + SPS R P+ + +R + +D+ PP ++ A
Sbjct: 126 DGFARQQEQQQPRRSPSPPKKREPTPDLTDVVPILERKRRLTQWDIKPPGYDLVTAEQAK 185
Query: 129 VPGQ--LPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQA-----TRHARRVYVGG 181
+ G LPG P P T+L AF P +T +R A+R+ V
Sbjct: 186 LSGMFPLPGAP--------RQQPMDPTKLQAFITQPGGQVTSAGLKASNSRQAKRLLVSN 237
Query: 182 LPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMAL 241
+P A E A+ +FF+ + G N D V + ++ FA +E R +A+ A+AL
Sbjct: 238 VPSGAGEDALISFFNLQLN--GLNVIESSDPCVLCQFSADRAFAVLEFRNASDATVALAL 295
Query: 242 DGIIFE----------GVA--VRVRRPTDY-NPTLAAALGPGQPSPNLNLAAVGLASGAI 288
DGI E GV+ + +RRP DY P L + P P N+
Sbjct: 296 DGISMEADDAMNGTADGVSSGLNIRRPKDYVMPALPDEM-PFDPEVISNVV--------- 345
Query: 289 GGAEGPD---RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQD 345
PD ++ + +P + TE Q+ ELL +FG F LVKD+ T S+G F Y +
Sbjct: 346 -----PDTVHKLCITNIPSFLTEEQVIELLAAFGKPKAFVLVKDQSTEESRGIAFTEYLE 400
Query: 346 P-AVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTS 403
P + + A +LNG+ +G K L V +A+ Q I AI +A QTS
Sbjct: 401 PSSANEPALNSLNGMDVGGKKLKVTKASIGPTQVANFDVGI-------TAISGLASQTS 452
>gi|114794658|pdb|2HZC|A Chain A, Crystal Structure Of The N-terminal Rrm Of The U2af Large
Subunit
Length = 87
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVE 233
ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN +K FAF+E R+V+
Sbjct: 6 ARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVD 64
Query: 234 EASNAMALDGIIFEGVAVRVRRP 256
E + AMA DGIIF+G ++++RRP
Sbjct: 65 ETTQAMAFDGIIFQGQSLKIRRP 87
>gi|47217926|emb|CAG02209.1| unnamed protein product [Tetraodon nigroviridis]
Length = 600
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 67/122 (54%), Gaps = 17/122 (13%)
Query: 309 TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
++KELL SFG L F+LVKD T SKGY FC Y D TD A A LNG+++GDK L V
Sbjct: 405 VKVKELLTSFGPLKAFNLVKDGATSLSKGYAFCEYVDVGATDQAVAGLNGMQLGDKKLIV 464
Query: 369 RRATASSGQSKTEQESILAQAQQHIAIQKMA-LQTSGMNTLGGGMSLFGETLAKVLCLTE 427
+RA+ +K S A+A + + + LQTSG+ T +VLCL
Sbjct: 465 QRASVG---AKNANPSAAAEAPVTLQVPGLQRLQTSGVPT-------------EVLCLLN 508
Query: 428 MM 429
M+
Sbjct: 509 MV 510
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 98/254 (38%), Gaps = 63/254 (24%)
Query: 100 SPSRSPSKSKRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFP 159
+P R P + R + PPAA +P A +L A+
Sbjct: 112 APPRLPGPAPRLPSVSLWPPAAGQIPTMA------------------LLATAASAGVVAA 153
Query: 160 LMPVQVMTQQATRHARRVYVGGLP---------PLANEQAIATFFSQVMTAIGGNSAGPG 210
PV V Q TR ARR+YVG +P + ++++A FF+ M + G S P
Sbjct: 154 PTPVPVAGSQMTRQARRLYVGNIPFGLTEALRRLCSPQESMAEFFNAQMR-LAGLSQAPS 212
Query: 211 DAVVNVYINHEKKFAFVEMR-------------TVEEASNAMALDGIIFEGVAVRVRR-- 255
+ V+ V IN +K FAF+E+R + ++ L G G +R R
Sbjct: 213 NPVLAVQINQDKNFAFLEVRPGFSAAAALPAAAAAADVCVSVPLGGRDHAGHGLRRHRVP 272
Query: 256 ------PTDYN-PTLAAALG-PGQPSPNL----------NLAAVGLASGAIGGAEGPDRV 297
PT P A LG G P P G+ S + + P ++
Sbjct: 273 GSGSEDPTASRLPASARHLGAAGVPRPRFLRAAARHAARVGRRPGVVSTVV--PDSPHKL 330
Query: 298 FVGGLPYYFTETQI 311
F+GGLP Y + Q+
Sbjct: 331 FIGGLPNYLNDDQV 344
>gi|395334381|gb|EJF66757.1| splicing factor CC1-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 624
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 102/234 (43%), Gaps = 22/234 (9%)
Query: 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTV 232
AR V+V L + + FF +G N+ V + K +VE R+V
Sbjct: 291 EARSVFVSQLAARLTARDLGYFFED---KLGENTVMDSRIVTDRISRRSKGIGYVEFRSV 347
Query: 233 EEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAE 292
E A+AL G + G+ ++++ + L PG NLNL +
Sbjct: 348 ELVDKAIALSGTVVMGLPIQIQ----HTEAERNRLHPG--DGNLNLPP------GVSAPH 395
Query: 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIA 352
G +++VG L + +E+ IK++ E FG L DL +D TG SKGY F Y+ +A
Sbjct: 396 GGMQLYVGSLHFNLSESDIKQVFEPFGELEFVDLHRDPVTGRSKGYAFVQYKRAEDAKMA 455
Query: 353 CAALNGLKMGDKTLTVRRATASSGQSKTEQESI-------LAQAQQHIAIQKMA 399
++G ++ +TL V T+Q+S+ L A + +QK+A
Sbjct: 456 LEQMDGFELAGRTLRVNTVHEKGSARYTQQDSLDEAGGGNLNAASRQALMQKLA 509
>gi|359477752|ref|XP_002281833.2| PREDICTED: uncharacterized protein LOC100266510 [Vitis vinifera]
Length = 895
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 121/298 (40%), Gaps = 80/298 (26%)
Query: 97 KSLSPS-RSPSKSKRRSGFDMAPPAAAMLPGAAVPGQL----PGVPSAVPEMAQNM---L 148
K+ SP+ RSP K + +G+D+ P + +V L P V S E+ + +
Sbjct: 343 KTPSPTNRSPEK--KSAGWDLPPSRTDGMNAGSVLSSLQVLKPTVSSNADELPSAVPVAV 400
Query: 149 PFGATQLGAFPLMPV---------------QVMTQQATRHARRVYVGGLPPLANEQAIAT 193
P AT A P +P + QATR RR+YV LP ++E+A+
Sbjct: 401 PVTATT--AKPPLPRIYSDAVSKNKNVSIDSIQLTQATRPMRRLYVENLPVSSSEKALME 458
Query: 194 FFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRV 253
+ + + G N ++ I+ EK A VE T E+AS A++ DGI F G +++
Sbjct: 459 CLNNFLLSSGINHVQGTPPCISCIIHKEKGQALVEFLTPEDASAALSFDGISFSGSILKI 518
Query: 254 RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKE 313
RRP D+ + E
Sbjct: 519 RRPKDF---------------------------------------------------LME 527
Query: 314 LLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
+ +FG L + + D G + F Y D +VT ACA LNG+K+G + LTV +A
Sbjct: 528 IAAAFGPLKAYRFQVNEDLG--EPCAFLEYVDQSVTLKACAGLNGMKLGGQVLTVVQA 583
>gi|403223258|dbj|BAM41389.1| snRNP splicing factor U2AF [Theileria orientalis strain Shintoku]
Length = 534
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEM 229
ATR R +Y+G +PP+ + + +Q + ++ G S PG+ + +I+ + +AFVE+
Sbjct: 119 ATRPYREIYIGNIPPVGDIAILLDIINQALISVNGTSM-PGNPCLKGWISSDGHYAFVEL 177
Query: 230 RTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTL-AAALGPGQPSPNLNLAAVGL 283
RT+EEASN M L G+ G ++V RP Y+P L + A P P+ + +L A+GL
Sbjct: 178 RTMEEASNCMQLTGLNIMGHNIKVNRPKTYDPDLMSKAPSPTVPTLDPSLLAMGL 232
>gi|209881578|ref|XP_002142227.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209557833|gb|EEA07878.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 533
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 98/403 (24%), Positives = 163/403 (40%), Gaps = 50/403 (12%)
Query: 14 GSRHKSSWVSGRSRTGERGRDRHHRDFKSGGDDRRRDKNYKYDREGIRDHDRTDRHRDYN 73
GS + + S S + + D S ++ + R I ++ + ++
Sbjct: 14 GSEQLNVYNSSTSNNSDES-PKKKEDSNSANEEETENSGVDNGRVDISKGEKIESPKEIY 72
Query: 74 RDKERRHRHRSRSHSSDRFRNRSKSLSPSRS--PSKSKRRSGFDMAPPAAAMLPGAAVPG 131
RR R S ++ N +S+SP RS S+ KRR G G P
Sbjct: 73 HIPRRRSRSPSTDNNDKEESNTGRSISPLRSDDSSRKKRRRGSS----------GWDAPF 122
Query: 132 QLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAI 191
P V +P M Q + +G+ + P QV TQ A R+YVG L +E +
Sbjct: 123 N-PDVSQLMPNMKQANV---GQMMGSSNIAPRQV-TQGA-----RIYVGSLDYSLSEADL 172
Query: 192 ATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVA 250
F T + + G N K F F+E T E A A+A ++ + +G
Sbjct: 173 RQVFGSFGTIVNIDMPREG--------NRSKGFCFIEYTTQESAEMALATMNRFVLKGRP 224
Query: 251 VRVRRPTD----YNPTLAAALG--------PGQPSPNLNLAAVGLASGAIGGAEGPDRVF 298
++V RPT+ N ++G P P N N + I +R++
Sbjct: 225 IKVGRPTNAIVSNNQNNNNSMGNHTGMVGMPVLPPENTN---ANIPPHQIPQNPPQNRIY 281
Query: 299 VGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT-GNSKGYGFCVYQDPAVTDIACAALN 357
+G +PY FT ++ + ++FG + L+ + G +GYGF + P +A +N
Sbjct: 282 IGSVPYSFTPDDLRHIFKAFGVILSCQLIPSVEKPGTHRGYGFIEFGTPDQAKLAIETMN 341
Query: 358 GLKMGDKTLTVRRATA--SSGQSKTEQESILAQAQQHIAIQKM 398
G ++G K L V ATA S + Q I++ Q++ Q++
Sbjct: 342 GFEVGGKQLKVNVATALKPSNSISSNQIPIVSPTLQNVMSQQI 384
>gi|390604396|gb|EIN13787.1| splicing factor CC1-like protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 433
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 104/234 (44%), Gaps = 23/234 (9%)
Query: 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTV 232
AR V+V L + + FF +G + V + K +VE++T+
Sbjct: 101 EARSVFVSQLAARLTARDLGYFFED---KLGEGTVMDARIVTDRLSRRSKGIGYVELKTI 157
Query: 233 EEASNAMALDGIIFEGVAVRVRR-PTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGA 291
E A+ L G + G+ ++V+ + N T A G G +LNL + G
Sbjct: 158 ELVDQAINLSGTVVMGLPIKVQHTEAERNRTHA---GDG----SLNLPP------GVSGT 204
Query: 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDI 351
GP +++VG L + TE+ IK++ E FG L DL +D TG SKGY F Y+ +
Sbjct: 205 HGPRQLYVGSLHFNLTESDIKQVFEPFGELEFVDLHRDPMTGRSKGYCFIQYKRAEDAKM 264
Query: 352 ACAALNGLKMGDKTLTVRRATASSGQSKTEQESI------LAQAQQHIAIQKMA 399
A + G ++ +TL V T+QES+ L A + +QK+A
Sbjct: 265 ALEQMEGFELAGRTLRVNTVHEKGTVKYTQQESLEENGGNLNAASRQALMQKLA 318
>gi|403367221|gb|EJY83425.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 543
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 89/391 (22%), Positives = 161/391 (41%), Gaps = 42/391 (10%)
Query: 13 EGSRHKSSWVSGRSRTGERGRDRHHRDFKSGGDDRRRDKNYKYDREGIRDHDRTDRHRDY 72
+ +H+SS ++R R R + RRRDK DR+G RD T + Y
Sbjct: 45 DDKKHRSSRDIDKARDESSKRKDDKRRTSDSREGRRRDK----DRKGKRD---TSEEKKY 97
Query: 73 NRDKERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPAAAMLPGAAVPGQ 132
+R +++ R++ + SSD ++ S S + + + + L + Q
Sbjct: 98 SRSEKKDRRNKDGNMSSDSQKSSPLVSSSSSNTPEKYKGDDILITEGYKLYLERKKLRKQ 157
Query: 133 LP-GVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAI 191
+A+ + + L L FP + R++ + LPP E+ +
Sbjct: 158 EEEKKAAALQDGMEGGLKLRKVDLKDFP------------NYKRKLVIQNLPPDITEEDV 205
Query: 192 ATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFE-GVA 250
+F V+++ + +++V + F +E R +E + LDG + G
Sbjct: 206 MNYFFTVISSFS-KVEYQKNPIMSVIKYKDLGFVTLEFRKRDEGEICLTLDGTEYRTGYK 264
Query: 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAE-----GPD---------- 295
+R+ R + A + G+ G++ + G + PD
Sbjct: 265 MRIMRVKRFIDDWNADIDKGKNPIEAMTRGKGVSLFSTGNNQFKEPAKPDQKAGKKEKVE 324
Query: 296 ----RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD-RDTGNSKGYGFCVYQDPAVTD 350
R+++G +P + +K++ ESFG L F+LVKD + +KGY F Y D D
Sbjct: 325 EVDNRLYMGNIPNSMKDEDVKKMCESFGRLKAFNLVKDPMNPDLNKGYAFFEYVDERSID 384
Query: 351 IACAALNGLKMGDKTLTVRRATASSGQSKTE 381
A +LNGL +K L V++A+A S+T+
Sbjct: 385 KAIKSLNGLDFKEKKLKVQKASAHQKTSQTQ 415
>gi|334349754|ref|XP_001379564.2| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Monodelphis
domestica]
Length = 348
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 105/254 (41%), Gaps = 58/254 (22%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFP 159
RSP K K R +D+ PP + P Q + +A A +LP A
Sbjct: 78 RSPRHEKKKKIRKYWDVPPPGFEHI----TPMQYKAMQAAGQIPATALLPTMTPDGLAVT 133
Query: 160 LMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN 219
PV V+ Q TR ARR+YVG +P E +A +++ A+ G A
Sbjct: 134 PTPVPVVGSQMTRQARRLYVGNIPFGITEGQVAISAARLPAALPGPPA------------ 181
Query: 220 HEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLA 279
+ + + G +A +++ P + P
Sbjct: 182 ------------CRPRAGNLGVGGAGPRPLAAQLKWPFAFPPA----------------- 212
Query: 280 AVGLASGAIGGAEGPD---RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSK 336
G+ S + PD ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SK
Sbjct: 213 --GVVSTVV-----PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 265
Query: 337 GYGFCVYQDPAVTD 350
GY FC Y D VTD
Sbjct: 266 GYAFCEYVDINVTD 279
>gi|344298613|ref|XP_003420986.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Loxodonta
africana]
Length = 434
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 121/318 (38%), Gaps = 62/318 (19%)
Query: 61 RDHDRTDRHRDYNRDKERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPA 120
RD DR + +R +ER+HRHRSRS R S SRS + + +PP
Sbjct: 66 RDRDRHRQRNSLSRSRERQHRHRSRSWDHQRS-------SESRSWDRRREDRVRYRSPPL 118
Query: 121 AAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVG 180
A S V E N+ P R AR V+
Sbjct: 119 ATGRRYGHSKSPHFREKSPVREPVDNLSP--------------------EERDARTVFCM 158
Query: 181 GLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEE 234
L + + FFS A+G V +V I K A+VE ++
Sbjct: 159 QLAARIRPRDLEDFFS----AVG--------KVRDVRIISDRNSRRSKGIAYVEFCEIQS 206
Query: 235 ASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGP 294
A+ L G GV + V+ LAA +A+ G+ GP
Sbjct: 207 VPLAIGLTGQWLLGVPIIVQASQAEKNRLAA-----------------MANNLQKGSGGP 249
Query: 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354
R++VG L + TE ++ + E FG + L KD DTG+SKGYGF + D A
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGKIDDILLTKDSDTGHSKGYGFITFSDSECARRALE 309
Query: 355 ALNGLKMGDKTLTVRRAT 372
LNG ++ + + V AT
Sbjct: 310 QLNGFELAGRPMRVGHAT 327
>gi|344298615|ref|XP_003420987.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Loxodonta
africana]
Length = 450
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 121/318 (38%), Gaps = 62/318 (19%)
Query: 61 RDHDRTDRHRDYNRDKERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPA 120
RD DR + +R +ER+HRHRSRS R S SRS + + +PP
Sbjct: 82 RDRDRHRQRNSLSRSRERQHRHRSRSWDHQRS-------SESRSWDRRREDRVRYRSPPL 134
Query: 121 AAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVG 180
A S V E N+ P R AR V+
Sbjct: 135 ATGRRYGHSKSPHFREKSPVREPVDNLSP--------------------EERDARTVFCM 174
Query: 181 GLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEE 234
L + + FFS A+G V +V I K A+VE ++
Sbjct: 175 QLAARIRPRDLEDFFS----AVG--------KVRDVRIISDRNSRRSKGIAYVEFCEIQS 222
Query: 235 ASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGP 294
A+ L G GV + V+ LAA +A+ G+ GP
Sbjct: 223 VPLAIGLTGQWLLGVPIIVQASQAEKNRLAA-----------------MANNLQKGSGGP 265
Query: 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354
R++VG L + TE ++ + E FG + L KD DTG+SKGYGF + D A
Sbjct: 266 MRLYVGSLHFNITEDMLRGIFEPFGKIDDILLTKDSDTGHSKGYGFITFSDSECARRALE 325
Query: 355 ALNGLKMGDKTLTVRRAT 372
LNG ++ + + V AT
Sbjct: 326 QLNGFELAGRPMRVGHAT 343
>gi|255575831|ref|XP_002528813.1| splicing factor u2af large subunit, putative [Ricinus communis]
gi|223531725|gb|EEF33547.1| splicing factor u2af large subunit, putative [Ricinus communis]
Length = 844
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 124/295 (42%), Gaps = 75/295 (25%)
Query: 93 RNRSKSLSPSRSPSK---SKRRSGFDMAPPAAAMLPGAAVP------GQLPGVP-----S 138
+ RS++ + + SP+K K+++ +D+AP A +VP Q+ + S
Sbjct: 303 KRRSEAAARTPSPTKHSPEKKKAKWDLAPEGADSTFSVSVPPIFKLSNQIASLNARATVS 362
Query: 139 AVPEMAQNMLPFGATQLGAF------PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIA 192
AVP + + P + VQ+ QATR RR+YV +P A+E+A+
Sbjct: 363 AVPVASIPVKPLSGVSSNILLTNKNDTIDSVQLT--QATRPMRRLYVENIPAEASEKAVL 420
Query: 193 TFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR 252
+ ++ + G N ++ I+ EK A VE T E+AS A++ DG F G ++
Sbjct: 421 ERLNNLLISSGVNHIQGTQPCISCIIHKEKGQALVEFLTPEDASAALSFDGSYFSGSTIK 480
Query: 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIK 312
+RRP D+ +A+ GP L A Y+F
Sbjct: 481 IRRPKDFIMEIASTFGP--------LKA-----------------------YHF------ 503
Query: 313 ELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367
E+ ++G F Y D +VT ACA LNG+K+G + ++
Sbjct: 504 ---ENIDDVNG-------------PCAFVEYADQSVTFRACAGLNGMKLGGQVIS 542
>gi|344298617|ref|XP_003420988.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Loxodonta
africana]
Length = 416
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 120/318 (37%), Gaps = 80/318 (25%)
Query: 61 RDHDRTDRHRDYNRDKERRHRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPA 120
RD DR + +R +ER+HRHRSRS R S SRS + + +PP
Sbjct: 66 RDRDRHRQRNSLSRSRERQHRHRSRSWDHQRS-------SESRSWDRRREDRVRYRSPPL 118
Query: 121 AAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVG 180
A P V + PE R AR V+
Sbjct: 119 ATGEP----------VDNLSPE----------------------------ERDARTVFCM 140
Query: 181 GLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEE 234
L + + FFS A+G V +V I K A+VE ++
Sbjct: 141 QLAARIRPRDLEDFFS----AVG--------KVRDVRIISDRNSRRSKGIAYVEFCEIQS 188
Query: 235 ASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGP 294
A+ L G GV + V+ LAA +A+ G+ GP
Sbjct: 189 VPLAIGLTGQWLLGVPIIVQASQAEKNRLAA-----------------MANNLQKGSGGP 231
Query: 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354
R++VG L + TE ++ + E FG + L KD DTG+SKGYGF + D A
Sbjct: 232 MRLYVGSLHFNITEDMLRGIFEPFGKIDDILLTKDSDTGHSKGYGFITFSDSECARRALE 291
Query: 355 ALNGLKMGDKTLTVRRAT 372
LNG ++ + + V AT
Sbjct: 292 QLNGFELAGRPMRVGHAT 309
>gi|449551106|gb|EMD42070.1| hypothetical protein CERSUDRAFT_90674 [Ceriporiopsis subvermispora
B]
Length = 623
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 115/266 (43%), Gaps = 37/266 (13%)
Query: 159 PLMPVQVMTQQATRH----ARRVYVGGLPPLANEQAIATFF-----------SQVMTA-I 202
P++ V M + R AR V+V L + + FF S+++T I
Sbjct: 255 PIVDVDPMNPEEPREDDSEARSVFVSQLAARLTARDLGYFFEDKLGEGSVMDSRIVTDRI 314
Query: 203 GGNSAGPGDAV--VNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYN 260
S G + +N + + +VE RTVE A+AL G + G+ ++++ +
Sbjct: 315 SRRSKGLLLIISRINTSLTFCLRIGYVEFRTVELVDKAIALSGTVVMGLPIQIQ----HT 370
Query: 261 PTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT 320
L PG NLNL + + G +++VG L + TE+ IK++ E FG
Sbjct: 371 EAERNRLHPG--DGNLNLPP------GVSASHGGMQLYVGSLHFNLTESDIKQVFEPFGE 422
Query: 321 LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKT 380
L DL +D TG SKGY F Y+ +A + G ++ +TL V T
Sbjct: 423 LEFVDLHRDPMTGRSKGYAFVQYKRSEDARMALEQMEGFELAGRTLRVNTVHEKGTIRYT 482
Query: 381 EQESI-------LAQAQQHIAIQKMA 399
+Q+S+ L A + +QK+A
Sbjct: 483 QQDSLDEAGGGNLNAASRQALMQKLA 508
>gi|85000357|ref|XP_954897.1| snrnp splicing factor (U2AF) [Theileria annulata strain Ankara]
gi|65303043|emb|CAI75421.1| snrnp splicing factor (U2AF), putative [Theileria annulata]
Length = 486
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 89/167 (53%), Gaps = 17/167 (10%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
++ R +Y+G +PP+ + + + +Q + ++ G S PG+ + +I+ + +AF+E+R
Sbjct: 100 SKAFREIYIGNIPPVGDIEILMDIINQALISVNGTSM-PGNPCLKGWISSDGHYAFIELR 158
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNP-TLAAALGPGQPSPNLNLAAVGL------ 283
T+EEASN M L G+ G ++V RP Y+ + A P P+ + +L A+G+
Sbjct: 159 TMEEASNCMQLTGLNIMGHNIKVNRPKTYDADVFSKAPSPTVPTLDPSLLAMGVQALKSA 218
Query: 284 -----ASGAIGGAEG----PDRVFVGGLPYYFTETQIKELLESFGTL 321
A+ I AE DR+ + G+P + + +LL+S GT+
Sbjct: 219 KEQIAAASDILAAEKAKSITDRLCLVGIPKDMEQQTVVDLLQSQGTI 265
>gi|170083917|ref|XP_001873182.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650734|gb|EDR14974.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 448
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 100/234 (42%), Gaps = 23/234 (9%)
Query: 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTV 232
AR V+V L + + FF +G + V + K +VE RT+
Sbjct: 116 EARSVFVSQLAARLTARDLGYFFED---KLGEGTVMDSRIVTDRLSRRSKGIGYVEFRTI 172
Query: 233 EEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAE 292
+ A+AL G + G+ + V+ + L PG S NL V + GAI
Sbjct: 173 DHVEKALALSGTVVMGLPIMVQ----LTESERNKLHPGDGSLNLP-PGVTASHGAI---- 223
Query: 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIA 352
++VG L + TE+ IK++ E FG L DL +D TG SKGY F Y+ +A
Sbjct: 224 ----LYVGSLHFNLTESDIKQVFEPFGELEFVDLHRDPMTGRSKGYAFVQYKRSEDARMA 279
Query: 353 CAALNGLKMGDKTLTVRRATASSGQSKTEQESI-------LAQAQQHIAIQKMA 399
+ G ++ +TL V T+Q+S+ L A + +QK+A
Sbjct: 280 LEQMEGFELAGRTLRVNTVHEKGTARYTQQDSLDEAGGGNLNAASRQALMQKLA 333
>gi|384252120|gb|EIE25597.1| splicing factor, CC1-like protein [Coccomyxa subellipsoidea C-169]
Length = 497
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 145/353 (41%), Gaps = 70/353 (19%)
Query: 34 DRHHRDFKSGGDDRRRDKNYKYDREGIRDHDRTDR-----HRDYNRDKERRHRHRSRSHS 88
D H+ K DR RD++ +RE RD DR + HRD + D+ER+ H S H
Sbjct: 25 DGTHKREKREKKDRTRDRDS--ERERTRDQDRDRKSSKREHRDKSPDRERKRHHSSHDHH 82
Query: 89 SDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNML 148
R+R S P RS K + R+ P V E +
Sbjct: 83 RSE-RDRKHSSRP-RSLEKRRERT------------------------PPEVREQREK-- 114
Query: 149 PFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAG 208
+ ++ R R V+ LP A E+ + FFS+ AG
Sbjct: 115 ---------------ERELKELDRDIRTVFAYNLPLKAEERDLFEFFSK---------AG 150
Query: 209 PGDAVVNVYINHEKK---FAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAA 265
P + V + + +K FA++E + AMAL G I G AV V+ ++ LA
Sbjct: 151 PIEDVKIIMDRNTRKSKGFAYIEYTNKADIVTAMALTGQILMGQAVMVK-SSEAEKNLAW 209
Query: 266 ALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFD 325
Q + L ++ +G A GP ++++G L E +K++ E+FG +
Sbjct: 210 EAAQAQNASMLQMSTIGNA------GTGPCKLYIGNLHPNIQEQDLKQVFEAFGAVEYIT 263
Query: 326 LVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
L KD TG S+GYGF YQ A L+GL + ++V+ A + ++
Sbjct: 264 LQKD-PTGRSQGYGFVQYQTTPDATKAMQQLDGLDIAGSQISVKIAPLTPAET 315
>gi|403412344|emb|CCL99044.1| predicted protein [Fibroporia radiculosa]
Length = 599
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 98/233 (42%), Gaps = 22/233 (9%)
Query: 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVE 233
AR V+V L + + FF +G S V + K +VE R+VE
Sbjct: 267 ARSVFVSQLAARLTARDLGYFFED---KLGEGSVMDSRIVTDRISRRSKGIGYVEFRSVE 323
Query: 234 EASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEG 293
A+ L G + G+ ++++ + L PG NLNL + G
Sbjct: 324 LVDKALGLSGTVVMGLPIQIQ----HTEAERNRLHPG--DGNLNLPP------GVSAPHG 371
Query: 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 353
+++VG L + TE+ IK++ E FG L DL +D TG SKGY F Y+ +A
Sbjct: 372 GMQLYVGSLHFNLTESDIKQVFEPFGELEFVDLHRDPMTGRSKGYAFVQYKRAEDARMAL 431
Query: 354 AALNGLKMGDKTLTVRRATASSGQSKTEQESI-------LAQAQQHIAIQKMA 399
+ G ++ +TL V +Q+S+ L A + +QK+A
Sbjct: 432 EQMEGFELAGRTLRVNTVHEKGTTKYAQQDSLDEAGGGNLNAASRQALMQKLA 484
>gi|159482188|ref|XP_001699155.1| hypothetical protein CHLREDRAFT_106436 [Chlamydomonas reinhardtii]
gi|158273218|gb|EDO99010.1| predicted protein [Chlamydomonas reinhardtii]
Length = 80
Score = 78.2 bits (191), Expect = 7e-12, Method: Composition-based stats.
Identities = 36/76 (47%), Positives = 51/76 (67%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGLP ++E +KELL +GTL F+LV D+ TG SKGY FC Y + + D+
Sbjct: 2 KLFVGGLPCEWSEDMVKELLAPYGTLKSFNLVMDKSTGKSKGYAFCEYSEESSADLLIKN 61
Query: 356 LNGLKMGDKTLTVRRA 371
L+ ++G K LTV+RA
Sbjct: 62 LHMRRVGSKALTVKRA 77
>gi|392597434|gb|EIW86756.1| splicing factor CC1-like protein [Coniophora puteana RWD-64-598
SS2]
Length = 360
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 99/234 (42%), Gaps = 22/234 (9%)
Query: 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTV 232
AR V+V L + + FF +G + V + K +VE R++
Sbjct: 28 EARSVFVSQLAARLTARDLGYFFED---KLGEGTVLDSRIVTDRISRRSKGIGYVEFRSI 84
Query: 233 EEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAE 292
+ A+ L G + G+ + V+ + L PG NLNL +
Sbjct: 85 DLVEKALGLSGTVVMGLPIMVQ----LTESERNRLHPG--DGNLNLPP------GVHAPH 132
Query: 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIA 352
G +++VG L + TE IK++ E FG L DL +D TG SKGY F Y+ P +A
Sbjct: 133 GAMQLYVGSLHFNLTEADIKQVFEPFGDLEFVDLHRDSTTGRSKGYAFVQYKRPEDAKMA 192
Query: 353 CAALNGLKMGDKTLTVRRATASSGQSKTEQESI-------LAQAQQHIAIQKMA 399
++G ++ +TL V T+Q+S+ L A + +QK+A
Sbjct: 193 LEQMDGFELAGRTLRVNTVHEKGTARYTQQDSLEETGGGNLNAASRQALMQKLA 246
>gi|336389603|gb|EGO30746.1| hypothetical protein SERLADRAFT_455043 [Serpula lacrymans var.
lacrymans S7.9]
Length = 583
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 100/233 (42%), Gaps = 22/233 (9%)
Query: 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVE 233
AR V+V L + + FF +G + V + K +VE R+++
Sbjct: 252 ARSVFVSQLAARLTARDLGYFFED---KLGEGTVMDSRIVTDRLSRRSKGIGYVEFRSID 308
Query: 234 EASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEG 293
A++L G + G+ V V+ + L PG NLNL + G
Sbjct: 309 MVEKAISLSGTVVMGLPVMVQ----LTESERNKLHPG--DGNLNLPP------GVSAPHG 356
Query: 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 353
+++VG L + TE+ IK++ E FG L DL +D TG SKGY F Y+ +A
Sbjct: 357 AMQLYVGSLHFNLTESDIKQVFEPFGELEFVDLHRDPMTGRSKGYAFVQYKRAEDARMAL 416
Query: 354 AALNGLKMGDKTLTV----RRATASSGQSKTEQES---ILAQAQQHIAIQKMA 399
+ G ++ +TL V + TA Q T E+ L A + +QK+A
Sbjct: 417 EQMEGFELAGRTLRVNTVHEKGTARYAQQDTLDEAGGGNLNAASRQALMQKLA 469
>gi|336376609|gb|EGO04944.1| hypothetical protein SERLA73DRAFT_174031 [Serpula lacrymans var.
lacrymans S7.3]
Length = 583
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 100/233 (42%), Gaps = 22/233 (9%)
Query: 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVE 233
AR V+V L + + FF +G + V + K +VE R+++
Sbjct: 252 ARSVFVSQLAARLTARDLGYFFED---KLGEGTVMDSRIVTDRLSRRSKGIGYVEFRSID 308
Query: 234 EASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEG 293
A++L G + G+ V V+ + L PG NLNL + G
Sbjct: 309 MVEKAISLSGTVVMGLPVMVQ----LTESERNKLHPG--DGNLNLPP------GVSAPHG 356
Query: 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 353
+++VG L + TE+ IK++ E FG L DL +D TG SKGY F Y+ +A
Sbjct: 357 AMQLYVGSLHFNLTESDIKQVFEPFGELEFVDLHRDPMTGRSKGYAFVQYKRAEDARMAL 416
Query: 354 AALNGLKMGDKTLTV----RRATASSGQSKTEQES---ILAQAQQHIAIQKMA 399
+ G ++ +TL V + TA Q T E+ L A + +QK+A
Sbjct: 417 EQMEGFELAGRTLRVNTVHEKGTARYAQQDTLDEAGGGNLNAASRQALMQKLA 469
>gi|403345499|gb|EJY72120.1| Splicing factor U2af large subunit, putative [Oxytricha trifallax]
Length = 437
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 101/233 (43%), Gaps = 20/233 (8%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSA--GPGDAVVNVYIN 219
P Q +T + R++YVG +PP I + + +G ++ GD +V +I+
Sbjct: 83 PSQGLTNH-NKAERQLYVGNIPPGLAVPQIMELLNTALKELGKDAGIFQEGDPIVGAWIS 141
Query: 220 HEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDY-----NPTLAAALGP----G 270
+ +AFV+ RT EEA+ AL + G ++V RP + NP+ A P G
Sbjct: 142 GDGHYAFVDFRTAEEATQGFALQQVSIHGNNLKVGRPKNATGPIPNPSQLLAGNPNLMSG 201
Query: 271 QP--SPNLNLAAVGLASGAIGGAEGP------DRVFVGGLPYYFTETQIKELLESFGTLH 322
Q S N GL + +G +V V P ++ I ++ E FG +
Sbjct: 202 QNVISNNKKKTNQGLKNLQLGDQGNQIIQALNTKVMVSNFPVNHSKESIHKICEVFGKVK 261
Query: 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
DL+KD TG KG ++D L G K+ +K L V+R T S
Sbjct: 262 NVDLLKDITTGEFKGQVNVEFEDELEAKKGYTGLMGFKIDEKVLFVKRLTTIS 314
>gi|125584846|gb|EAZ25510.1| hypothetical protein OsJ_09334 [Oryza sativa Japonica Group]
Length = 942
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 42/204 (20%)
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQ-VMTAIGGNSAGPGDAVVNVYINHEKK 223
V QATR RR+++ LP LA E + ++ ++++ + ++ IN +K+
Sbjct: 464 VQLTQATRPLRRLHIENLPSLATEDMLIGCLNEFLLSSSASHIQRSKQPCLSCVINKDKR 523
Query: 224 FAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGL 283
AFVE T E+A+ A++ DG F G ++++RRP +Y A + P +PS + L + +
Sbjct: 524 QAFVEFLTPEDATAALSFDGRSFGGSSLKIRRPKEY--VEMAHVAPKKPSEEIKLISDVV 581
Query: 284 ASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343
A+ P ++F+ G+ + +Y
Sbjct: 582 -------ADSPHKIFIAGISGVISSE--------------------------------MY 602
Query: 344 QDPAVTDIACAALNGLKMGDKTLT 367
D +T ACA LNG+K+G LT
Sbjct: 603 IDHPITSKACAGLNGMKLGGGILT 626
>gi|432107103|gb|ELK32526.1| Splicing factor U2AF 65 kDa subunit [Myotis davidii]
Length = 243
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 50/76 (65%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++F+GGLP Y + Q+KELL FG L F+LVKD TG SKG F Y D ++ D A A
Sbjct: 128 KLFMGGLPNYMKDDQVKELLTWFGPLKAFNLVKDSTTGLSKGCAFYEYVDISIRDQAMAG 187
Query: 356 LNGLKMGDKTLTVRRA 371
NG+++G K L V+RA
Sbjct: 188 PNGMQLGVKKLLVQRA 203
>gi|392571432|gb|EIW64604.1| splicing factor CC1-like protein [Trametes versicolor FP-101664
SS1]
Length = 344
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 99/234 (42%), Gaps = 22/234 (9%)
Query: 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTV 232
AR V+V L + + FF +G S V + K +VE RTV
Sbjct: 11 EARSVFVSQLAARLTARDLGYFFED---KLGEGSVMDSRIVTDRISRRSKGIGYVEFRTV 67
Query: 233 EEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAE 292
E A+ L G + G+ ++++ + L PG NLNL +
Sbjct: 68 ELVDRAIGLSGTVVMGLPIQIQ----HTEAERNRLHPG--DGNLNLPP------GVSAPH 115
Query: 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIA 352
G +++VG L + TE+ IK++ E FG L DL +D TG SKGY F Y+ +A
Sbjct: 116 GGMQLYVGSLHFNLTESDIKQVFEPFGELEFVDLHRDPMTGRSKGYAFVQYKRAEDAKMA 175
Query: 353 CAALNGLKMGDKTLTVRRATASSGQSKTEQESI-------LAQAQQHIAIQKMA 399
+ G ++ +TL V T+Q+++ L A + +QK+A
Sbjct: 176 LEQMEGFELAGRTLRVNTVHEKGSTRYTQQDTLDEAGGGNLNAASRQALMQKLA 229
>gi|426201409|gb|EKV51332.1| hypothetical protein AGABI2DRAFT_189584 [Agaricus bisporus var.
bisporus H97]
Length = 563
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 99/235 (42%), Gaps = 25/235 (10%)
Query: 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTV 232
AR V+V L + + FF +G + V + K +VE RT+
Sbjct: 231 EARSVFVSQLAARLTARDLGYFFED---KLGEGTVMDARIVTDRLSRRSKGIGYVEFRTI 287
Query: 233 EEASNAMALDGIIFEGVAVRVR-RPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGA 291
E A+ L G + G+ + V+ + N T A G S NL V GAI
Sbjct: 288 ELVEKAIGLSGTVVMGLPIMVQLTEAERNKTHA-----GDGSINLP-PGVSAPHGAI--- 338
Query: 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDI 351
++VG L + TE+ IK++ E FG L DL +D TG SKGY F Y+ +
Sbjct: 339 -----LYVGSLHFNLTESDIKQVFEVFGELEFVDLHRDAMTGRSKGYAFVQYKRAEDARM 393
Query: 352 ACAALNGLKMGDKTLTVRRATASSGQSKTEQESI-------LAQAQQHIAIQKMA 399
A + G ++ +TL V T+Q+S+ L A + +QK+A
Sbjct: 394 ALQQMEGFELAGRTLRVNTVHEKGTTKYTQQDSLDESGGGNLNAASRQALMQKLA 448
>gi|302838915|ref|XP_002951015.1| hypothetical protein VOLCADRAFT_48801 [Volvox carteri f.
nagariensis]
gi|300263710|gb|EFJ47909.1| hypothetical protein VOLCADRAFT_48801 [Volvox carteri f.
nagariensis]
Length = 82
Score = 76.6 bits (187), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 51/80 (63%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGLP + E +KELL FGTL F+LV D+ TG SKGY FC Y + + ++
Sbjct: 2 KLFVGGLPCEWGEDMVKELLIPFGTLKSFNLVMDKSTGKSKGYAFCEYVEDSSAEVLIKN 61
Query: 356 LNGLKMGDKTLTVRRATASS 375
L+ ++G K LTV+RA S
Sbjct: 62 LHMRRIGSKALTVKRAMEGS 81
>gi|409083550|gb|EKM83907.1| hypothetical protein AGABI1DRAFT_110515 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 563
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 99/235 (42%), Gaps = 25/235 (10%)
Query: 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTV 232
AR V+V L + + FF +G + V + K +VE RT+
Sbjct: 231 EARSVFVSQLAARLTARDLGYFFED---KLGEGTVMDARIVTDRLSRRSKGIGYVEFRTI 287
Query: 233 EEASNAMALDGIIFEGVAVRVR-RPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGA 291
E A+ L G + G+ + V+ + N T A G S NL V GAI
Sbjct: 288 ELVEKAIGLSGTVVMGLPIMVQLTEAERNKTHA-----GDGSINLP-PGVSAPHGAI--- 338
Query: 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDI 351
++VG L + TE+ IK++ E FG L DL +D TG SKGY F Y+ +
Sbjct: 339 -----LYVGSLHFNLTESDIKQVFEVFGELEFVDLHRDAMTGRSKGYAFVQYKRAEDARM 393
Query: 352 ACAALNGLKMGDKTLTVRRATASSGQSKTEQESI-------LAQAQQHIAIQKMA 399
A + G ++ +TL V T+Q+S+ L A + +QK+A
Sbjct: 394 ALQQMEGFELAGRTLRVNTVHEKGTTKYTQQDSLDESGGGNLNAASRQALMQKLA 448
>gi|347968829|ref|XP_003436304.1| AGAP002908-PC [Anopheles gambiae str. PEST]
gi|333467822|gb|EGK96709.1| AGAP002908-PC [Anopheles gambiae str. PEST]
Length = 250
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 65/122 (53%), Gaps = 21/122 (17%)
Query: 310 QIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369
Q+KELL SFG L F+LVKD TG KGY F Y + VTD A A LNG+++GDK L V+
Sbjct: 58 QVKELLLSFGQLKAFNLVKDAATGLGKGYAFAEYVEYTVTDQAIAGLNGMQLGDKKLIVQ 117
Query: 370 RATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGET--LAKVLCLTE 427
RA+ +K +++A Q + G+SL G + +VLCL
Sbjct: 118 RASVG---AKNSNAAVVAPVQIQVP----------------GLSLVGSSGPPTEVLCLLN 158
Query: 428 MM 429
M+
Sbjct: 159 MV 160
>gi|299755304|ref|XP_002912089.1| hypothetical protein CC1G_13622 [Coprinopsis cinerea okayama7#130]
gi|298411164|gb|EFI28595.1| hypothetical protein CC1G_13622 [Coprinopsis cinerea okayama7#130]
Length = 580
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 103/235 (43%), Gaps = 26/235 (11%)
Query: 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTV 232
AR V+V L + + FF +G + V + K +VE R++
Sbjct: 250 EARSVFVSQLAARLTARDLGYFFED---KLGEGTVMDARIVTDRLSRRSKGIGYVEFRSI 306
Query: 233 EEASNAMALDGIIFEGVAVRVR-RPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGA 291
+ A+AL G I G+ + V+ ++ N + A G G +L+L ASGAI
Sbjct: 307 DLVEKAIALSGTIVMGLPINVQLTESERNKSHA---GDG----SLHLPPGVTASGAI--- 356
Query: 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDI 351
++VG L + TE+ IK++ E FG L DL KD TG SKGY F Y+ +
Sbjct: 357 -----LYVGSLHFNLTESDIKQVFEPFGELEFVDLHKDPMTGRSKGYAFVQYKRAEDARM 411
Query: 352 ACAALNGLKMGDKTLTVRRATASSGQSKTEQESI-------LAQAQQHIAIQKMA 399
A + G ++ +TL V T+ +S+ L A + +QK+A
Sbjct: 412 ALEQMEGFELAGRTLRVNTVHEKGSVRYTQTDSLDDSGGANLNAASRQALMQKLA 466
>gi|414591752|tpg|DAA42323.1| TPA: hypothetical protein ZEAMMB73_939656 [Zea mays]
Length = 270
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 112 SGFDMAPP--AAAMLPGAAVPGQLPGVPSAVPEMA--QNMLPFGATQLGAFPLMPVQVMT 167
SGFD AP A ++ +PGQLPGV + +P + N+ A Q + P Q MT
Sbjct: 184 SGFDQAPTQQAVPIVAAGVIPGQLPGVTAPIPGVGVLPNLYNLAAGQFNPHVIQP-QAMT 242
Query: 168 QQATRHARRVYVGGLPPLANEQAI 191
QQATRHAR VYVGGLPP ANEQ I
Sbjct: 243 QQATRHARPVYVGGLPPTANEQVI 266
>gi|145547916|ref|XP_001459639.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124427465|emb|CAK92242.1| unnamed protein product [Paramecium tetraurelia]
Length = 402
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 18/199 (9%)
Query: 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTV 232
HA R+Y+G LP ++ + + Q M + G PGD V+ V + +K+ FV+ R++
Sbjct: 86 HAVRLYLGNLPDNVDKDHLHNYIRQQMESHGA-VLDPGDPVIQVQLQPGQKYCFVQFRSI 144
Query: 233 EEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAE 292
EE A+ +D I ++G ++ +R DY ++ + + P I E
Sbjct: 145 EETEAALQIDTINYQGKPLKFKRVKDY--EISPRIEGEREVP------------KIQPKE 190
Query: 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN-SKGYGFCVYQDPAVTDI 351
++FV GL + +L +G L ++V RD N KG+ FC ++ T
Sbjct: 191 PAQKLFVCGLAPDTDNDALANILSEYGNLKSLNVV--RDIKNVCKGFAFCEFETDLETQN 248
Query: 352 ACAALNGLKMGDKTLTVRR 370
LN +G + L V++
Sbjct: 249 CVNGLNNKVIGGRLLQVKK 267
>gi|307108143|gb|EFN56384.1| expressed protein [Chlorella variabilis]
Length = 404
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%)
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVE 228
Q TR RR+YVGGLP + + TF +Q + A+G ++ + E+ FAF+E
Sbjct: 246 QMTRPMRRLYVGGLPQPCYDFMLTTFLNQALMALGICQVAGKAPIIACQVTPERNFAFIE 305
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGP 269
+A+ A+ LDGI F G ++++RP DY P A P
Sbjct: 306 FGDTSDATAALQLDGIPFRGNTLKIKRPKDYTPPFGAPPDP 346
>gi|242018247|ref|XP_002429590.1| A-kinase anchor protein, putative [Pediculus humanus corporis]
gi|212514557|gb|EEB16852.1| A-kinase anchor protein, putative [Pediculus humanus corporis]
Length = 408
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 16/144 (11%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +P+ TE ++KE+ G + F LV DR+ G KGYGFC Y+D + A L
Sbjct: 16 VFVGNIPFDLTEEKLKEIFSEVGPVLSFKLVYDRENGKPKGYGFCEYKDIETANSAMRNL 75
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFG 416
NG ++G + L V A++ +++ E ++++ QA + I Q S N
Sbjct: 76 NGFEIGGRVLKVD--NAANEKTRMEMQNMI-QANEPI-------QNSDNNFEHVEAEKVP 125
Query: 417 ETLAKVLC------LTEMMKSMKK 434
E ++K + + E+MK MK+
Sbjct: 126 EAISKAVASLPPEQMFELMKQMKQ 149
>gi|323451698|gb|EGB07574.1| hypothetical protein AURANDRAFT_64670 [Aureococcus anophagefferens]
Length = 214
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 62/110 (56%)
Query: 164 QVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK 223
Q+ + ATR RR+YVG LP + + + F ++ + A G AG + VV+ +++ +KK
Sbjct: 43 QMPSNPATRKERRLYVGNLPQTFDSEQLRIFLNEALRACGAIPAGVDEVVVSSWVSPDKK 102
Query: 224 FAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPS 273
FAFVE+ TVE A+ ++ L GI G +++ P +Y GP P+
Sbjct: 103 FAFVELSTVEAATTSLGLSGITCMGCQLKICHPNNYVVGALPGTGPTLPA 152
>gi|345496803|ref|XP_003427819.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 2
[Nasonia vitripennis]
Length = 425
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE +K++ G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 19 VFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 78
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESIL 386
NG ++G +TL R A + +S+ E +S+L
Sbjct: 79 NGYEIGGRTL--RVDNACTEKSRMEMQSLL 106
>gi|156553552|ref|XP_001601896.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 1
[Nasonia vitripennis]
Length = 434
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE +K++ G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 19 VFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 78
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESIL 386
NG ++G +TL R A + +S+ E +S+L
Sbjct: 79 NGYEIGGRTL--RVDNACTEKSRMEMQSLL 106
>gi|193598819|ref|XP_001951232.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 1
[Acyrthosiphon pisum]
gi|328706164|ref|XP_003243012.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 2
[Acyrthosiphon pisum]
Length = 386
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++K++ G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 14 VFVGNIPYEATEEKLKDIFSEVGPVISFKLVYDRETGKPKGYGFCEYKDQETALSAMRNL 73
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESIL 386
NG ++G +TL R A + +S+ E +S++
Sbjct: 74 NGYEIGGRTL--RVDNACTEKSRLEMQSLM 101
>gi|307202383|gb|EFN81811.1| Cleavage stimulation factor 64 kDa subunit [Harpegnathos saltator]
Length = 439
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE +K++ G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 19 VFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 78
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESIL 386
NG ++G +TL R A + +S+ E +S+L
Sbjct: 79 NGYEIGGRTL--RVDNACTEKSRMEMQSLL 106
>gi|350401751|ref|XP_003486249.1| PREDICTED: cleavage stimulation factor subunit 2-like [Bombus
impatiens]
Length = 441
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE +K++ G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 19 VFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 78
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESIL 386
NG ++G +TL R A + +S+ E +S+L
Sbjct: 79 NGYEIGGRTL--RVDNACTEKSRMEMQSLL 106
>gi|116793682|gb|ABK26841.1| unknown [Picea sitchensis]
Length = 347
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 28/209 (13%)
Query: 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVEMRTV 232
++YVG LP + + +A F + +G + V +Y + FAFV M TV
Sbjct: 160 KLYVGNLPFDIDSEGLAKMFDE---------SGVVEMVEVIYDRSSGRSRGFAFVTMSTV 210
Query: 233 EEASNAMA-LDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGA 291
EEA A+ +G +G ++RV P P L P + N G
Sbjct: 211 EEAEAAIKKFNGFEIDGRSLRVNFPE--VPRLQNGRSPARSPSNFG-----------GFV 257
Query: 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDI 351
+ P +V+VG L + T ++E L G + G +++DR+TG S+G+GF + A +
Sbjct: 258 DSPHKVYVGNLAWSVTSETLREALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSEAEVEA 317
Query: 352 ACAALNGLKMGDKTL--TVRRATASSGQS 378
A + ++GL++ +++ V ++ ++ GQS
Sbjct: 318 AVSEMDGLEVEGRSIRVNVAKSRSTEGQS 346
>gi|66516308|ref|XP_623321.1| PREDICTED: cleavage stimulation factor subunit 2 [Apis mellifera]
Length = 441
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE +K++ G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 19 VFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 78
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESIL 386
NG ++G +TL R A + +S+ E +S+L
Sbjct: 79 NGYEIGGRTL--RVDNACTEKSRMEMQSLL 106
>gi|383860217|ref|XP_003705587.1| PREDICTED: cleavage stimulation factor subunit 2-like [Megachile
rotundata]
Length = 441
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE +K++ G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 19 VFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 78
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESIL 386
NG ++G +TL R A + +S+ E +S+L
Sbjct: 79 NGYEIGGRTL--RVDNACTEKSRMEMQSLL 106
>gi|380028061|ref|XP_003697730.1| PREDICTED: cleavage stimulation factor subunit 2-like [Apis florea]
Length = 441
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE +K++ G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 19 VFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 78
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESIL 386
NG ++G +TL R A + +S+ E +S+L
Sbjct: 79 NGYEIGGRTL--RVDNACTEKSRMEMQSLL 106
>gi|332026262|gb|EGI66401.1| Cleavage stimulation factor 64 kDa subunit [Acromyrmex echinatior]
Length = 480
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE +K++ G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 19 VFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 78
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESIL 386
NG ++G +TL R A + +S+ E +S+L
Sbjct: 79 NGYEIGGRTL--RVDNACTEKSRMEMQSLL 106
>gi|307172466|gb|EFN63915.1| Cleavage stimulation factor 64 kDa subunit [Camponotus floridanus]
Length = 438
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE +K++ G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 19 VFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 78
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESIL 386
NG ++G +TL R A + +S+ E +S+L
Sbjct: 79 NGYEIGGRTL--RVDNACTEKSRMEMQSLL 106
>gi|193671655|ref|XP_001946102.1| PREDICTED: cleavage stimulation factor subunit 2-like
[Acyrthosiphon pisum]
Length = 388
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++K++ G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 14 VFVGNIPYEATEEKLKDIFNEVGPVISFKLVYDRETGKPKGYGFCEYKDQETALSAMRNL 73
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESIL 386
NG ++G +TL R A + +S+ E +S++
Sbjct: 74 NGYEIGGRTL--RVDNACTEKSRLEMQSLM 101
>gi|116781814|gb|ABK22250.1| unknown [Picea sitchensis]
Length = 355
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 99/209 (47%), Gaps = 26/209 (12%)
Query: 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVEMRTV 232
++YVG LP + + +A F + +G + V +Y + FAFV M TV
Sbjct: 168 KLYVGNLPFDIDSEGLAKMFDE---------SGVVEMVEVIYDRSSGRSRGFAFVTMSTV 218
Query: 233 EEASNAMA-LDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGA 291
EEA A+ +G +G ++RV P P L P + N G
Sbjct: 219 EEAEAAIKKFNGFEIDGRSLRVNFPE--VPRLQNGRSPARSPSNFG-----------GFV 265
Query: 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDI 351
+ P +V+VG L + T ++E L G + G +++DR+TG S+G+GF + A +
Sbjct: 266 DSPHKVYVGNLAWSVTSETLREALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSEAEVEA 325
Query: 352 ACAALNGLKMGDKTLTVRRATASSGQSKT 380
A + ++GL++ +++ V A + S + ++
Sbjct: 326 AVSEMDGLEVEGRSIRVNVAKSRSTEGQS 354
>gi|322788027|gb|EFZ13868.1| hypothetical protein SINV_14012 [Solenopsis invicta]
Length = 291
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE +K++ G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 19 VFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 78
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESIL 386
NG ++G +TL R A + +S+ E +S+L
Sbjct: 79 NGYEIGGRTL--RVDNACTEKSRMEMQSLL 106
>gi|71027151|ref|XP_763219.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350172|gb|EAN30936.1| hypothetical protein TP03_0201 [Theileria parva]
Length = 509
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 91/185 (49%), Gaps = 17/185 (9%)
Query: 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEE 234
R +Y+G +PP+ + + + +Q + ++ G S PG+ + +I+ + +AF+E+RT+EE
Sbjct: 104 REIYIGNIPPVGDIEILMDIINQALISVNGTSM-PGNPCLKGWISSDGHYAFIELRTMEE 162
Query: 235 ASNAMALDGIIFEGVAVRVRRPTDYNP-TLAAALGPGQPSPNLNLAAVGL---------- 283
ASN M L G+ G ++V RP ++ + A P P+ + +L A+G+
Sbjct: 163 ASNCMQLTGLNIMGHNIKVNRPKTFDADVFSKAPSPTVPTLDPSLLAMGVQALKSAKEQI 222
Query: 284 -ASGAIGGAEG----PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
A+ I AE DR+ + G+P + + + L GT+ + + + N
Sbjct: 223 AAASDILAAEKAKPITDRLCLVGIPKDTDQQTVVDTLRLHGTIKFTNFIMGIENFNYITV 282
Query: 339 GFCVY 343
+ +Y
Sbjct: 283 IYVIY 287
>gi|409051610|gb|EKM61086.1| hypothetical protein PHACADRAFT_247456 [Phanerochaete carnosa
HHB-10118-sp]
Length = 584
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 104/250 (41%), Gaps = 33/250 (13%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
P+ ++ AR V+V L + + FF + G A +V I+
Sbjct: 241 PLAEEPREDDSEARSVFVSQLAARLTARDLGYFFEDKL----GEGAVMDSRIVTDRISRR 296
Query: 222 KK-FAFVEMRTVEEASNAMALDGIIFEGVAVRVRR-PTDYNPTLAAA---LGPGQPSPNL 276
K +VE RT+E A+ L G I G+ ++V+ + N T A L PG
Sbjct: 297 SKGIGYVEFRTIELVEKAIGLSGTIVMGLPIQVQHTEAERNRTHAGDSLHLPPG------ 350
Query: 277 NLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSK 336
S GG + ++VG L + TE+ I+++ E FG L DL +D TG SK
Sbjct: 351 -------VSSHHGGMQ----LYVGSLHFNLTESDIRQVFEPFGELEFVDLHRDPMTGRSK 399
Query: 337 GYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESI-------LAQA 389
GY F Y+ +A + G ++ +TL V T QES+ L A
Sbjct: 400 GYAFVQYKRGEDAKMALEQMEGFELAGRTLRVNTVHEKGNVRYTPQESLDDTGGGNLNAA 459
Query: 390 QQHIAIQKMA 399
+ +QK+A
Sbjct: 460 SRQALMQKLA 469
>gi|340506650|gb|EGR32741.1| u2 snrnp auxilliary splicing factor, putative [Ichthyophthirius
multifiliis]
Length = 276
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 63/111 (56%), Gaps = 6/111 (5%)
Query: 278 LAAVGLASGAIGGAEG--PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN- 334
+ + + + EG +++++GGLP Y + +IK+L E+FG L F+L K ++
Sbjct: 26 MDKIQVEDAILDSEEGIQENKIYMGGLPTYLKDPEIKKLCETFGKLKYFNLAKQQNENKE 85
Query: 335 --SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQ-SKTEQ 382
SKGY F Y+D VTD A ALNGL GD+ L V + T + +KT+Q
Sbjct: 86 WVSKGYCFFEYEDKEVTDRAIKALNGLPCGDRKLKVSKVTRDQNKLAKTQQ 136
>gi|242015973|ref|XP_002428613.1| RNA-binding region-containing protein, putative [Pediculus humanus
corporis]
gi|212513276|gb|EEB15875.1| RNA-binding region-containing protein, putative [Pediculus humanus
corporis]
Length = 593
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 85/350 (24%), Positives = 138/350 (39%), Gaps = 45/350 (12%)
Query: 27 RTGERGRDRHHRDFKSGGDDRRRDKNYKYDREGIRDHDRTDRHRDYNRDKER-RHRHRSR 85
+ +R RD+H + ++ RDK+ RE RD DR R RD + +ER R+RH
Sbjct: 26 KRSKRDRDKHDKRSRNSRSRHSRDKDRHSSRE--RDRDRHSRERDRHSSRERDRNRH--- 80
Query: 86 SHSSDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQ 145
S DR+ ++ + S+ R + + P L P +
Sbjct: 81 SRDRDRY-SKDRDRRSRDRDRHSRERDRYSRERDRYRSRRRSISPNNL------APHLLN 133
Query: 146 NMLPF----GATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTA 201
N + + F +P+ +T + R R V+ L + + FFS
Sbjct: 134 NEYAYKKYASYRKSPTFSKLPIDDLTPEE-RDQRTVFCMQLSQRIRGRDLEEFFS----- 187
Query: 202 IGGNSAGPGDAVVNVYINHEKKF---AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTD 258
S G V + N ++F A+VE + E AM L G G+ + V+
Sbjct: 188 ----SVGKVRDVKLITCNKTRRFKGIAYVEFKDPESVPLAMGLTGQKLLGIPISVQ---- 239
Query: 259 YNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESF 318
PT A G + + + + GP R++VG L + TE ++ + E F
Sbjct: 240 --PTQAEKNRQGNSTAPMMMPS---------DMRGPMRLYVGSLHFNITEDMLRGIFEPF 288
Query: 319 GTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G + L+ D +TG SKGYGF + A LNG ++ + + V
Sbjct: 289 GKIDSIQLIMDPETGRSKGYGFITFHSADDAKKALEQLNGFELAGRPMKV 338
>gi|124511860|ref|XP_001349063.1| conserved Plasmodium protein, unknown function [Plasmodium
falciparum 3D7]
gi|23498831|emb|CAD50908.1| conserved Plasmodium protein, unknown function [Plasmodium
falciparum 3D7]
Length = 1125
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 28/207 (13%)
Query: 139 AVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQV 198
++ + +N+L L P + V + + AR +YVG +P + Q I + +
Sbjct: 623 SLQNLYKNVLNINDLNL---PTIDVNI-----EKTARELYVGNIPQHIDIQEIVKYLNSC 674
Query: 199 MTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRR--- 255
+ + + + I + +AFVE R +++ SN M L+GI F G +R+ R
Sbjct: 675 LLILYNKENENENICLKACIRGDTHYAFVEFRNIQDTSNCMLLNGINFYGNNLRIGRPKT 734
Query: 256 -PTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQ---- 310
P +Y+ + A P + L+ +GL S I + +++ GLP + Q
Sbjct: 735 FPIEYHSLIPQATIPAIDNYYLSQGLIGLRSFII-FCKNEEKMKNDGLPVNMIKLQKLCV 793
Query: 311 -----------IKELLESFGTLHGFDL 326
IKELLE+FG + F+
Sbjct: 794 SNISKNNDTSKIKELLEAFGEIKNFEF 820
>gi|118788821|ref|XP_317010.3| AGAP008433-PA [Anopheles gambiae str. PEST]
gi|116122929|gb|EAA12873.4| AGAP008433-PA [Anopheles gambiae str. PEST]
Length = 526
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 90/214 (42%), Gaps = 29/214 (13%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
P++ M+Q+ R AR V+ L + + + FFS S G V + N
Sbjct: 159 PLEEMSQE-DRDARTVFCMQLSQRIHARDLEEFFS---------SVGKVRDVRLITCNKT 208
Query: 222 KKF---AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
K+F A++E + E + A+ L G G+ + V+ T A+ P P N
Sbjct: 209 KRFKGIAYIEFKDPESVALALGLSGQKLLGIPISVQH-TQAEKNRMASQPPVAPPKN--- 264
Query: 279 AAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
GP R++VG L + TE + + E FG + L+ D DTG SKGY
Sbjct: 265 ------------PSGPMRLYVGSLHFNITEDMLNGIFEPFGKIDNIQLIMDADTGRSKGY 312
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
GF + + A LNG ++ + + V T
Sbjct: 313 GFITFHNADDAKKALEQLNGFELAGRPMKVGNVT 346
>gi|443694236|gb|ELT95429.1| hypothetical protein CAPTEDRAFT_160825 [Capitella teleta]
Length = 548
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY +E Q+KE+ + G + F LV DR+TG KGYGFC YQD A L
Sbjct: 26 VFVGNIPYEASEEQLKEVFQQAGPVISFRLVYDRETGKPKGYGFCEYQDVETAQSAMRNL 85
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
N + L V A+ QSK E +S+
Sbjct: 86 NNYDYNGRPLRV--GVAAGEQSKDENKSM 112
>gi|30685698|ref|NP_850209.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|330253740|gb|AEC08834.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 979
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 18/165 (10%)
Query: 117 APPAAAMLPGAAVPGQLPGVPSAVPEMAQNML-----------PFG---ATQLGAFPLMP 162
A A M + G +A P +++ L PF A Q +F
Sbjct: 810 ATVTAGMFSDSVFSGLQAATQTAYPTISEASLTLLKPLMVMDAPFRTPPARQTTSFD--- 866
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEK 222
V ++TR RR+Y +P A+E+++ F+ M + G N + ++ IN EK
Sbjct: 867 -SVQLTESTRRMRRLYAENVPDSASEKSLIECFNGYMLSSGSNHIKGSEPCISCIINKEK 925
Query: 223 KFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAAL 267
A VE T ++AS A++LDG F G +++RRP DY T +++
Sbjct: 926 SQALVEFLTPQDASAALSLDGCSFAGSNLKIRRPKDYVRTTVSSI 970
>gi|393218616|gb|EJD04104.1| splicing factor, CC1-like protein [Fomitiporia mediterranea MF3/22]
Length = 464
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 108/250 (43%), Gaps = 28/250 (11%)
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
P P ++ AR V+V L + + FF +G NS V +
Sbjct: 119 PSDPYMDEPKEDDSEARSVFVSQLAARMTARDLGYFFED---KLGDNSVLDVRIVTDRIS 175
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRR-PTDYNPTLAAALGPGQPSPNLN 277
K A+VE ++E A++L G I G+ + ++ + N T A G S NL
Sbjct: 176 RRSKGIAYVEFGSIELVDKAISLTGTIVMGLPIMIQHTEAERNKTHA-----GDGSINLP 230
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
A G GA ++VG L + TE+ IK++ E FG L DL KD TG SKG
Sbjct: 231 PGASG--RGAT--------LYVGSLHFNLTESDIKQVFEPFGELDFVDLHKDSATGRSKG 280
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSK-TEQESI-------LAQA 389
Y F Y+ +A + G ++ +TL V GQ++ + Q+S+ L A
Sbjct: 281 YAFIHYKRAEDAKMALEQMEGFELAGRTLRV-NTVHEKGQTRISTQDSLDESGGGNLNAA 339
Query: 390 QQHIAIQKMA 399
+ +QK+A
Sbjct: 340 SRQALMQKLA 349
>gi|427792527|gb|JAA61715.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Rhipicephalus pulchellus]
Length = 497
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 12/158 (7%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE + VE AM L+G G+ + V+ PT AAA + L V
Sbjct: 179 KGIAYVEFQDVESVPLAMGLNGQKLFGIPIVVQ-PTQAERNRAAAQNASTSNSTLQRGNV 237
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
G P R++VG L + TE +K + E FG + +L+KD +T SKGYGF
Sbjct: 238 G-----------PMRLYVGSLHFNITEEMLKGIFEPFGKIDKIELIKDMETNRSKGYGFI 286
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSK 379
+ D A LNG ++ + + V T + S+
Sbjct: 287 TFHDSEDAKKALEQLNGFELAGRPMKVGHVTERTDVSQ 324
>gi|332372985|gb|AEE61634.1| unknown [Dendroctonus ponderosae]
Length = 409
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++K++ G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 16 VFVGNIPYEATEEKLKDIFGEVGQVLSFKLVFDRETGKPKGYGFCEYRDQETALSAMRNL 75
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILAQ 388
NG ++G ++L V A + +S+ E +++L Q
Sbjct: 76 NGYEIGGRSLRVD--NACTEKSRMEMQNLLNQ 105
>gi|427794973|gb|JAA62938.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Rhipicephalus pulchellus]
Length = 509
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 12/158 (7%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE + VE AM L+G G+ + V+ PT AAA + L V
Sbjct: 191 KGIAYVEFQDVESVPLAMGLNGQKLFGIPIVVQ-PTQAERNRAAAQNASTSNSTLQRGNV 249
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
G P R++VG L + TE +K + E FG + +L+KD +T SKGYGF
Sbjct: 250 G-----------PMRLYVGSLHFNITEEMLKGIFEPFGKIDKIELIKDMETNRSKGYGFI 298
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSK 379
+ D A LNG ++ + + V T + S+
Sbjct: 299 TFHDSEDAKKALEQLNGFELAGRPMKVGHVTERTDVSQ 336
>gi|270000744|gb|EEZ97191.1| hypothetical protein TcasGA2_TC004378 [Tribolium castaneum]
Length = 409
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++K++ G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 16 VFVGNIPYEATEEKLKDIFGEVGQVLSFKLVFDRETGKPKGYGFCEYRDQETALSAMRNL 75
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILAQ 388
NG ++G + L V A + +S+ E +++L Q
Sbjct: 76 NGYEIGGRNLRV--DNACTEKSRMEMQNLLNQ 105
>gi|195996811|ref|XP_002108274.1| hypothetical protein TRIADDRAFT_37071 [Trichoplax adhaerens]
gi|190589050|gb|EDV29072.1| hypothetical protein TRIADDRAFT_37071 [Trichoplax adhaerens]
Length = 351
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 18/155 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE R V+ A+ L+G EG+ + ++R Q N +
Sbjct: 37 KGIAYVEFRLVDSVDKALKLNGTKVEGIPIMIQRT--------------QSEKN----KI 78
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+GP R+++G L Y E ++ + E FG + ++++D DT SKGYGF
Sbjct: 79 AALQAQQKAQQGPTRLYIGSLHYNINEDMLRAIFEPFGLVENVNIIRDSDTNVSKGYGFI 138
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASSG 376
Y++P A LNGL++ + + V T S
Sbjct: 139 QYKEPDSARRALEQLNGLEVAGRPIKVGTVTDRSA 173
>gi|313234527|emb|CBY10484.1| unnamed protein product [Oikopleura dioica]
Length = 333
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 55/95 (57%), Gaps = 7/95 (7%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA- 355
VFVG +PY TE QI+++ G + F LV DR+TG KGYGFC Y+D TD A +A
Sbjct: 27 VFVGNIPYEATEEQIRDIFNEVGVVLSFRLVYDRETGKPKGYGFCEYKD---TDTAMSAM 83
Query: 356 --LNGLKMGDKTLTVRRATASSGQSKTE-QESILA 387
LN ++ + L V AT G K + Q S++A
Sbjct: 84 RNLNTRELHGRNLRVDHATRDHGVEKEQPQASVIA 118
>gi|391347243|ref|XP_003747874.1| PREDICTED: cleavage stimulation factor subunit 2-like [Metaseiulus
occidentalis]
Length = 422
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K + E G + F LV DR+TG KGYGFC ++D A L
Sbjct: 20 VFVGNIPYDATEEQLKTIFEEVGPVVNFRLVYDRETGKPKGYGFCEFKDQETAMSAMRNL 79
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILAQ 388
N ++G + L V A+S ++K E +++ AQ
Sbjct: 80 NSFEIGGRALRVDH--AASERNKEELKALYAQ 109
>gi|88911212|gb|ABD58896.1| chloroplast single strand DNA binding protein [Mesostigma viride]
Length = 299
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 10/216 (4%)
Query: 164 QVMTQQATRHA--RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
+ QAT A ++YVG L +++ + FSQ + V++
Sbjct: 77 ETFQDQATSTAASTKLYVGNLAWSCDDEMLNQAFSQF------GEVKAAEVVLDRESGRS 130
Query: 222 KKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
+ FAFV M + + A A LDG G A+RV P A + +
Sbjct: 131 RGFAFVTMASPDAAEKARRGLDGTELAGRAIRVNFPQPKGERAPRAERGERSERSERSER 190
Query: 281 VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGF 340
G G A +R++VG LP+ + +++L FGT++ +V DRD+G S+G+ F
Sbjct: 191 TYTPRGD-GEAGDANRLYVGNLPWSMDDGMLEDLFMEFGTVNYARVVMDRDSGRSRGFAF 249
Query: 341 CVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSG 376
P + A A L+G ++G +T+ V AT SSG
Sbjct: 250 VALSTPEEANEAMANLDGEEIGGRTIRVNLATKSSG 285
>gi|449458894|ref|XP_004147181.1| PREDICTED: uncharacterized protein LOC101213128 [Cucumis sativus]
Length = 910
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 82/204 (40%), Gaps = 50/204 (24%)
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF 224
V QATR RR+Y+ LP A+E+AI + + + G N ++ I+ ++
Sbjct: 453 VQLTQATRPMRRLYIENLPHSASEKAIIDCLNGFLMSSGVNHIEGTQPCISCIIHKDRGQ 512
Query: 225 AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLA 284
A VE T E+AS A+ DG F G +++RRP DY TL
Sbjct: 513 ALVEFLTPEDASAALLFDGSDFSGSTLKIRRPKDYIETL--------------------- 551
Query: 285 SGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQ 344
++++ +FG L + + D F Y
Sbjct: 552 ---------------------------RDVVTAFGRLKAYHFEINDDLNGP--CAFLEYV 582
Query: 345 DPAVTDIACAALNGLKMGDKTLTV 368
D +V ACA LNG+K+G + L V
Sbjct: 583 DESVVSKACAGLNGMKIGGQVLKV 606
>gi|256082940|ref|XP_002577709.1| splicing factor [Schistosoma mansoni]
gi|360043602|emb|CCD81148.1| putative splicing factor [Schistosoma mansoni]
Length = 463
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK---FAFVE 228
R AR V+V L ++ + FF+ S G V + N K+ A+VE
Sbjct: 101 RDARTVFVWQLSARIRQRDLEDFFT---------SVGKIRDVRLIMDNKTKRSKGIAYVE 151
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
R VE A A+ L G GV +++++ ++A P P P+
Sbjct: 152 FREVESAQLALGLTGTRLLGVPIQIQQSHAEKNRVSAT--PSLPRPSQQ----------- 198
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GP ++++G L Y TE +K + E FG + L+KD T S+GYGF Y +
Sbjct: 199 --NRGPMKLYIGSLHYNITEEMLKGIFEPFGKIEDIKLIKDPTTNRSQGYGFVTYVNSDD 256
Query: 349 TDIACAALNGLKMGDKTLTVRRATASS 375
A LNG ++ + + V T S
Sbjct: 257 AKKALDQLNGFELAGRPMKVNHVTERS 283
>gi|226469236|emb|CAX70097.1| RNA-binding protein 39 [Schistosoma japonicum]
Length = 463
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 89/207 (42%), Gaps = 27/207 (13%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK---FAFVE 228
R AR V+V L ++ + FF+ S G V + N K+ A+VE
Sbjct: 101 RDARTVFVWQLSARIRQRDLEDFFT---------SVGKIRDVRLIMDNKTKRSKGIAYVE 151
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
R VE A A+ L G GV +++++ ++A P P P+
Sbjct: 152 FREVESAQLALGLTGTRLLGVPIQIQQSHAEKNRVSAT--PSLPRPSQQ----------- 198
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
+GP ++++G L Y TE +K + E FG + L+KD T S+GYGF Y +
Sbjct: 199 --NKGPMKLYIGSLHYNITEEMLKGIFEPFGKIEDIKLIKDPATNRSQGYGFVTYVNSDD 256
Query: 349 TDIACAALNGLKMGDKTLTVRRATASS 375
A LNG ++ + + V T S
Sbjct: 257 AKKALDQLNGFELAGRPMKVNHVTERS 283
>gi|126342916|ref|XP_001364467.1| PREDICTED: cleavage stimulation factor subunit 2-like [Monodelphis
domestica]
Length = 551
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|358342556|dbj|GAA49996.1| RNA-binding protein 39 [Clonorchis sinensis]
Length = 730
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 86/204 (42%), Gaps = 27/204 (13%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK---FAFVE 228
R AR V+V L ++ + FF+ V G V + N K+ A+VE
Sbjct: 76 RDARTVFVWQLSARIRQRDLEDFFTSV---------GKIRDVRLIMDNKTKRSKGIAYVE 126
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
R VE A A+ L G GV +++++ + A P P P
Sbjct: 127 FREVESAQLALGLTGTRLLGVPIQIQQSHAEKNRMNAI--PSVPKPTQQ----------- 173
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GP ++++G L Y TE +K + E FG + L+KD TG S+GYGF Y +
Sbjct: 174 --NRGPMKLYIGSLHYNITEEMLKGIFEPFGKIDDIKLIKDPATGRSQGYGFVTYANSDD 231
Query: 349 TDIACAALNGLKMGDKTLTVRRAT 372
A LNG ++ + + V T
Sbjct: 232 AKKALDQLNGFELAGRPMKVNHVT 255
>gi|346465875|gb|AEO32782.1| hypothetical protein [Amblyomma maculatum]
Length = 558
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 71/158 (44%), Gaps = 12/158 (7%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE VE AM L+G G+ + V+ PT AAA S L V
Sbjct: 238 KGIAYVEFLDVESVPLAMGLNGQKLFGIPIVVQ-PTQAERNRAAAQNASTSSSTLQRGNV 296
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
G P R++VG L + TE +K + E FG + +L+KD +T SKGYGF
Sbjct: 297 G-----------PMRLYVGSLHFNITEDMLKGIFEPFGKIDKIELIKDMETNRSKGYGFI 345
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSK 379
+ D A LNG ++ + + V T + S+
Sbjct: 346 TFHDSEDAKKALEQLNGFELAGRPMKVGHVTERTDVSQ 383
>gi|449498643|ref|XP_004160593.1| PREDICTED: uncharacterized LOC101213128 [Cucumis sativus]
Length = 918
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 82/204 (40%), Gaps = 50/204 (24%)
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF 224
V QATR RR+Y+ LP A+E+AI + + + G N ++ I+ ++
Sbjct: 461 VQLTQATRPMRRLYIENLPHSASEKAIIDCLNGFLMSSGVNHIEGTQPCISCIIHKDRGQ 520
Query: 225 AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLA 284
A VE T E+AS A+ DG F G +++RRP DY TL
Sbjct: 521 ALVEFLTPEDASAALLFDGSDFSGSTLKIRRPKDYIETL--------------------- 559
Query: 285 SGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQ 344
++++ +FG L + + D F Y
Sbjct: 560 ---------------------------RDVVTAFGRLKAYHFEINDDLNGP--CAFLEYV 590
Query: 345 DPAVTDIACAALNGLKMGDKTLTV 368
D +V ACA LNG+K+G + L V
Sbjct: 591 DESVVSKACAGLNGMKIGGQVLKV 614
>gi|22478042|gb|AAH36719.1| Cstf2 protein [Mus musculus]
Length = 510
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|449498377|ref|XP_002191180.2| PREDICTED: cleavage stimulation factor subunit 2 [Taeniopygia
guttata]
Length = 575
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|426252723|ref|XP_004020052.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant
isoform 1 [Ovis aries]
Length = 572
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|260790683|ref|XP_002590371.1| hypothetical protein BRAFLDRAFT_216236 [Branchiostoma floridae]
gi|229275563|gb|EEN46382.1| hypothetical protein BRAFLDRAFT_216236 [Branchiostoma floridae]
Length = 222
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 8/118 (6%)
Query: 278 LAAVGLASGAIGGAEGPDR----VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG 333
+AAVGL G DR VFVG +PY TE Q+K++ G + F LV DR+TG
Sbjct: 1 MAAVGLQ----GLNPAQDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVISFRLVYDRETG 56
Query: 334 NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQ 391
KGYGFC Y+D A LNG ++ + L V A + + + +Q ++ +Q+
Sbjct: 57 KPKGYGFCEYKDQETALSAMRNLNGHELNGRQLRVDNAASEKSKEELKQLTVAGPSQE 114
>gi|196115100|ref|NP_001124486.1| cleavage stimulation factor, 3' pre-RNA subunit 2 [Rattus
norvegicus]
gi|195539770|gb|AAI68251.1| Cstf2 protein [Rattus norvegicus]
Length = 575
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|18875338|ref|NP_573459.1| cleavage stimulation factor subunit 2 [Mus musculus]
gi|71153229|sp|Q8BIQ5.2|CSTF2_MOUSE RecName: Full=Cleavage stimulation factor subunit 2; AltName:
Full=CF-1 64 kDa subunit; AltName: Full=Cleavage
stimulation factor 64 kDa subunit; Short=CSTF 64 kDa
subunit; Short=CstF-64
gi|11139720|gb|AAG31814.1|AF317552_1 polyadenylation protein CSTF64 [Mus musculus]
gi|26353226|dbj|BAC40243.1| unnamed protein product [Mus musculus]
Length = 580
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|102269210|gb|ABF55966.2| cleavage stimulation factor 64-kDa subunit [Bombyx mori]
Length = 326
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++K++ G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 20 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 79
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILAQAQ 390
NG ++G ++L V A + +S+ E ++++ Q
Sbjct: 80 NGYEIGGRSLRV--DNACTEKSRMEMQALMQGPQ 111
>gi|426223062|ref|XP_004005698.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant-like
[Ovis aries]
Length = 607
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|88682979|gb|AAI05553.1| CSTF2 protein [Bos taurus]
Length = 632
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|301788792|ref|XP_002929813.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant-like
[Ailuropoda melanoleuca]
Length = 552
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|26328597|dbj|BAC28037.1| unnamed protein product [Mus musculus]
Length = 580
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|336088638|ref|NP_001229511.1| cleavage stimulation factor subunit 2 tau variant [Bos taurus]
gi|296472872|tpg|DAA14987.1| TPA: CSTF2 protein-like [Bos taurus]
Length = 642
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|157821159|ref|NP_001101056.1| cleavage stimulation factor subunit 2 tau variant [Rattus
norvegicus]
gi|149062701|gb|EDM13124.1| rCG47773 [Rattus norvegicus]
Length = 629
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|47225344|emb|CAG09844.1| unnamed protein product [Tetraodon nigroviridis]
Length = 570
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 28 VFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 87
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 88 NGREFSGRALRVD--NAASEKNKEELKSL 114
>gi|301788318|ref|XP_002929575.1| PREDICTED: cleavage stimulation factor subunit 2-like [Ailuropoda
melanoleuca]
Length = 582
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|431895723|gb|ELK05144.1| Cleavage stimulation factor 64 kDa subunit [Pteropus alecto]
Length = 577
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|192764314|gb|ACF05701.1| alphaCstF-64 variant 4 [Mus musculus]
Length = 554
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|426252725|ref|XP_004020053.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant
isoform 2 [Ovis aries]
Length = 612
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|194332803|ref|NP_001123707.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Xenopus
(Silurana) tropicalis]
gi|189442601|gb|AAI67314.1| LOC100170457 protein [Xenopus (Silurana) tropicalis]
Length = 498
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|344275007|ref|XP_003409305.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant
[Loxodonta africana]
Length = 609
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|197246895|gb|AAI69065.1| Cleavage stimulation factor, 3' pre-RNA subunit 2, tau [Rattus
norvegicus]
Length = 629
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|426252729|ref|XP_004020055.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant
isoform 4 [Ovis aries]
Length = 646
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|426252727|ref|XP_004020054.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant
isoform 3 [Ovis aries]
Length = 623
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|357627631|gb|EHJ77269.1| hypothetical protein KGM_03087 [Danaus plexippus]
Length = 425
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++K++ G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 8 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 67
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESIL 386
NG ++G ++L R A + +S+ E ++++
Sbjct: 68 NGYEIGGRSL--RVDNACTEKSRMEMQALM 95
>gi|50510589|dbj|BAD32280.1| mKIAA0689 protein [Mus musculus]
Length = 643
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 29 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 88
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 89 NGREFSGRALRVD--NAASEKNKEELKSL 115
>gi|348570430|ref|XP_003471000.1| PREDICTED: cleavage stimulation factor subunit 2-like [Cavia
porcellus]
Length = 577
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|91094479|ref|XP_970762.1| PREDICTED: similar to cleavage stimulation factor 64-kDa subunit
[Tribolium castaneum]
Length = 424
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++K++ G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 16 VFVGNIPYEATEEKLKDIFGEVGQVLSFKLVFDRETGKPKGYGFCEYRDQETALSAMRNL 75
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILAQ 388
NG ++G + L R A + +S+ E +++L Q
Sbjct: 76 NGYEIGGRNL--RVDNACTEKSRMEMQNLLNQ 105
>gi|291408103|ref|XP_002720432.1| PREDICTED: cleavage stimulation factor subunit 2 [Oryctolagus
cuniculus]
Length = 576
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|194373969|dbj|BAG62297.1| unnamed protein product [Homo sapiens]
Length = 553
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|195116809|ref|XP_002002944.1| GI10246 [Drosophila mojavensis]
gi|193913519|gb|EDW12386.1| GI10246 [Drosophila mojavensis]
Length = 617
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 83/204 (40%), Gaps = 28/204 (13%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF---AFVE 228
R AR V+ L + + FFS V G V + N K+F A++E
Sbjct: 257 RDARTVFCIQLSQRVRARDLEEFFSSV---------GKVRDVRLITCNKTKRFKGIAYIE 307
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
E + A+ L G GV + V+ L +A P QP +
Sbjct: 308 FEDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQSAPPPFQPKAHT------------ 355
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF Y +
Sbjct: 356 ----GPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADD 411
Query: 349 TDIACAALNGLKMGDKTLTVRRAT 372
A LNG ++ + + V T
Sbjct: 412 AKKALEQLNGFELAGRPMKVGNVT 435
>gi|410043862|ref|XP_003951699.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant [Pan
troglodytes]
Length = 576
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|444707906|gb|ELW49054.1| Cleavage stimulation factor subunit 2 tau variant [Tupaia
chinensis]
Length = 654
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|157108428|ref|XP_001650224.1| splicing factor [Aedes aegypti]
gi|108879330|gb|EAT43555.1| AAEL005046-PA [Aedes aegypti]
Length = 544
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 85/204 (41%), Gaps = 28/204 (13%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF---AFVE 228
R AR V+ L + + FFS V G V + N K+F A++E
Sbjct: 186 RDARTVFCMQLSQRIRARDLEEFFSSV---------GKVRDVRLITCNKTKRFKGIAYIE 236
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
+ E + A+ L G G+ + V+ +A+ P QP P +
Sbjct: 237 FKDPESVALALGLSGQRLLGIPISVQHTQAEKNRMAST--PPQPPPKV------------ 282
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GP R++VG L + TE ++ + E FG + L+ D DTG SKGYGF + +
Sbjct: 283 --TSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDSDTGRSKGYGFITFHNADD 340
Query: 349 TDIACAALNGLKMGDKTLTVRRAT 372
A LNG ++ + + V T
Sbjct: 341 AKKALEQLNGFELAGRPMKVGNVT 364
>gi|351715564|gb|EHB18483.1| Cleavage stimulation factor 64 kDa subunit, tau variant
[Heterocephalus glaber]
Length = 642
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|57530169|ref|NP_001006433.1| cleavage stimulation factor subunit 2 [Gallus gallus]
gi|53128673|emb|CAG31323.1| hypothetical protein RCJMB04_5b8 [Gallus gallus]
Length = 475
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|355681345|gb|AER96778.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Mustela
putorius furo]
Length = 582
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|194042423|ref|XP_001926989.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant
isoform 1 [Sus scrofa]
Length = 615
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|20072518|gb|AAH26995.1| Cstf2t protein [Mus musculus]
Length = 637
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|21619877|gb|AAH33135.1| Similar to cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kD, partial [Homo sapiens]
Length = 559
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 17 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 76
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 77 NGREFSGRALRVD--NAASEKNKEELKSL 103
>gi|74007924|ref|XP_861405.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 5 [Canis
lupus familiaris]
Length = 577
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|4557493|ref|NP_001316.1| cleavage stimulation factor subunit 2 [Homo sapiens]
gi|332861154|ref|XP_003317595.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 1 [Pan
troglodytes]
gi|397478196|ref|XP_003810439.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 1 [Pan
paniscus]
gi|426396653|ref|XP_004064546.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 1 [Gorilla
gorilla gorilla]
gi|461847|sp|P33240.1|CSTF2_HUMAN RecName: Full=Cleavage stimulation factor subunit 2; AltName:
Full=CF-1 64 kDa subunit; AltName: Full=Cleavage
stimulation factor 64 kDa subunit; Short=CSTF 64 kDa
subunit; Short=CstF-64
gi|181139|gb|AAA35724.1| cleavage stimulation factor [Homo sapiens]
gi|17389334|gb|AAH17712.1| Cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Homo
sapiens]
gi|32879899|gb|AAP88780.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Homo
sapiens]
gi|61359609|gb|AAX41742.1| cleavage stimulation factor 3' pre-RNA subunit 2 [synthetic
construct]
gi|61359616|gb|AAX41743.1| cleavage stimulation factor 3' pre-RNA subunit 2 [synthetic
construct]
gi|119623223|gb|EAX02818.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, isoform
CRA_a [Homo sapiens]
gi|123981258|gb|ABM82458.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa
[synthetic construct]
gi|123996091|gb|ABM85647.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa
[synthetic construct]
gi|261860120|dbj|BAI46582.1| Cleavage stimulation factor 64 kDa subunit [synthetic construct]
gi|410256936|gb|JAA16435.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Pan
troglodytes]
gi|410289934|gb|JAA23567.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Pan
troglodytes]
Length = 577
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|410353769|gb|JAA43488.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Pan
troglodytes]
Length = 577
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|395820735|ref|XP_003783716.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant
[Otolemur garnettii]
Length = 601
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|148709763|gb|EDL41709.1| cleavage stimulation factor, 3' pre-RNA subunit 2, tau [Mus
musculus]
Length = 644
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 30 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 89
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 90 NGREFSGRALRVD--NAASEKNKEELKSL 116
>gi|147898871|ref|NP_001080179.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Xenopus
laevis]
gi|27735464|gb|AAH41291.1| Cstf-64 protein [Xenopus laevis]
Length = 518
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|27807239|ref|NP_777110.1| cleavage stimulation factor subunit 2 [Bos taurus]
gi|71153228|sp|Q8HXM1.1|CSTF2_BOVIN RecName: Full=Cleavage stimulation factor subunit 2; AltName:
Full=CF-1 64 kDa subunit; AltName: Full=Cleavage
stimulation factor 64 kDa subunit; Short=CSTF 64 kDa
subunit; Short=CstF-64
gi|24416593|gb|AAN05427.1| CstF-64 [Bos taurus]
gi|296470997|tpg|DAA13112.1| TPA: cleavage stimulation factor 64 kDa subunit [Bos taurus]
Length = 572
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|344296752|ref|XP_003420068.1| PREDICTED: cleavage stimulation factor subunit 2-like [Loxodonta
africana]
Length = 582
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|311276614|ref|XP_003135279.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 1
[Sus scrofa]
Length = 572
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|51258747|gb|AAH80037.1| Cstf-64-prov protein [Xenopus laevis]
Length = 498
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|148277061|ref|NP_112539.2| cleavage stimulation factor subunit 2 tau variant [Mus musculus]
gi|71153235|sp|Q8C7E9.2|CSTFT_MOUSE RecName: Full=Cleavage stimulation factor subunit 2 tau variant;
AltName: Full=CF-1 64 kDa subunit tau variant; AltName:
Full=Cleavage stimulation factor 64 kDa subunit tau
variant; Short=CSTF 64 kDa subunit tau variant; AltName:
Full=TauCstF-64
gi|26330250|dbj|BAC28855.1| unnamed protein product [Mus musculus]
gi|26350087|dbj|BAC38683.1| unnamed protein product [Mus musculus]
Length = 632
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|410988989|ref|XP_004000752.1| PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit
2 [Felis catus]
Length = 577
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|26341156|dbj|BAC34240.1| unnamed protein product [Mus musculus]
Length = 632
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|332254744|ref|XP_003276492.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 2
[Nomascus leucogenys]
Length = 597
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|192764312|gb|ACF05700.1| betaCstF-64 variant 3 [Mus musculus]
Length = 630
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|119224067|gb|AAI26544.1| CSTF2 protein [Bos taurus]
Length = 592
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|426257829|ref|XP_004022524.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 1 [Ovis
aries]
Length = 572
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|332861156|ref|XP_529072.3| PREDICTED: cleavage stimulation factor subunit 2 isoform 2 [Pan
troglodytes]
gi|397478198|ref|XP_003810440.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 2 [Pan
paniscus]
gi|426396655|ref|XP_004064547.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 2 [Gorilla
gorilla gorilla]
Length = 597
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|332254742|ref|XP_003276491.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 1
[Nomascus leucogenys]
Length = 577
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|192764310|gb|ACF05699.1| betaCstF-64 variant 2 [Homo sapiens]
Length = 597
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|74007936|ref|XP_549135.2| PREDICTED: cleavage stimulation factor subunit 2 isoform 2 [Canis
lupus familiaris]
Length = 597
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|395850631|ref|XP_003797883.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 1
[Otolemur garnettii]
Length = 576
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|403298762|ref|XP_003940176.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 1 [Saimiri
boliviensis boliviensis]
gi|403298764|ref|XP_003940177.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 577
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|395850633|ref|XP_003797884.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 2
[Otolemur garnettii]
Length = 596
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|410927616|ref|XP_003977237.1| PREDICTED: cleavage stimulation factor subunit 2-like [Takifugu
rubripes]
Length = 497
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 31 VFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 90
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 91 NGREFSGRALRVD--NAASEKNKEELKSL 117
>gi|296235968|ref|XP_002763125.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 1
[Callithrix jacchus]
Length = 597
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|335306285|ref|XP_003360436.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 2
[Sus scrofa]
Length = 592
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|321479154|gb|EFX90110.1| hypothetical protein DAPPUDRAFT_299933 [Daphnia pulex]
Length = 381
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++K++ G + F +V DR+TG KGYGFC Y+D A L
Sbjct: 16 VFVGNIPYDVTEEKLKDIFSEAGPVVSFKIVYDRETGKPKGYGFCEYRDQETALCAMRNL 75
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILAQ 388
NG ++ +TL R A + +S+ E +S++ +
Sbjct: 76 NGYEIAGRTL--RVDNACTEKSRLEMQSLMQE 105
>gi|444518829|gb|ELV12414.1| Cleavage stimulation factor subunit 2 [Tupaia chinensis]
Length = 409
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|402217675|gb|EJT97754.1| splicing factor CC1-like protein [Dacryopinax sp. DJM-731 SS1]
Length = 640
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 23/234 (9%)
Query: 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEE 234
R V+V L + + FF + +G S V + K A+VE+ +++
Sbjct: 303 RSVFVSQLAARLTARDLGYFFEE---KLGEGSVRDVRIVTDRVSRRSKGIAYVELSSIDM 359
Query: 235 ASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGP 294
S A+AL G I G+ + V+ T+ AA G +++ L G G
Sbjct: 360 VSRAIALTGTIVMGLPIMVQL-TESERNKVAASG----------SSMHLPPGVTAPPPGS 408
Query: 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354
+++VG L + TE+ +K++ E FG L DL +D TG SKG+ F Y+ +A
Sbjct: 409 MQLYVGSLHFNLTESDVKQVFEPFGELEFVDLHRDPLTGRSKGFAFVQYKRSEDARMALQ 468
Query: 355 ALNGLKMGDKTLTVRRATASSG------QSKTEQES---ILAQAQQHIAIQKMA 399
+++G + + L V G QS + ES L A + +QK+A
Sbjct: 469 SMDGFDLAGRQLKVNTVHEKGGAIRYQSQSDSLDESGGGNLNAASRQALMQKLA 522
>gi|194205912|ref|XP_001917732.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant-like
[Equus caballus]
Length = 619
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|417412278|gb|JAA52529.1| Putative mrna cleavage and polyadenylation factor i complex subunit
rna15, partial [Desmodus rotundus]
Length = 678
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 52 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 111
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 112 NGREFSGRALRVD--NAASEKNKEELKSL 138
>gi|348515337|ref|XP_003445196.1| PREDICTED: cleavage stimulation factor subunit 2-like [Oreochromis
niloticus]
Length = 478
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 31 VFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 90
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L R A+S ++K E +S+
Sbjct: 91 NGREFSGRAL--RVDNAASEKNKEELKSL 117
>gi|297304342|ref|XP_001089558.2| PREDICTED: cleavage stimulation factor subunit 2-like [Macaca
mulatta]
gi|402910777|ref|XP_003918028.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 3 [Papio
anubis]
gi|355704983|gb|EHH30908.1| hypothetical protein EGK_20728 [Macaca mulatta]
gi|355757534|gb|EHH61059.1| hypothetical protein EGM_18986 [Macaca fascicularis]
Length = 597
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|402910773|ref|XP_003918026.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 1 [Papio
anubis]
gi|402910775|ref|XP_003918027.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 2 [Papio
anubis]
Length = 577
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|426257831|ref|XP_004022525.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 2 [Ovis
aries]
Length = 592
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|431839028|gb|ELK00957.1| Cleavage stimulation factor 64 kDa subunit, tau variant [Pteropus
alecto]
Length = 601
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|390480015|ref|XP_003735829.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 2
[Callithrix jacchus]
Length = 577
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|348576422|ref|XP_003473986.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant-like
[Cavia porcellus]
Length = 630
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|440901693|gb|ELR52585.1| Cleavage stimulation factor subunit 2 [Bos grunniens mutus]
Length = 619
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|632500|gb|AAB50269.1| polyadenylation factor 64 kDa subunit [Xenopus laevis]
Length = 497
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|197100099|ref|NP_001125111.1| cleavage stimulation factor subunit 2 [Pongo abelii]
gi|71153230|sp|Q5RDA3.1|CSTF2_PONAB RecName: Full=Cleavage stimulation factor subunit 2; AltName:
Full=CF-1 64 kDa subunit; AltName: Full=Cleavage
stimulation factor 64 kDa subunit; Short=CSTF 64 kDa
subunit; Short=CstF-64
gi|55726993|emb|CAH90254.1| hypothetical protein [Pongo abelii]
Length = 577
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|403298766|ref|XP_003940178.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 597
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|291404363|ref|XP_002718535.1| PREDICTED: cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant [Oryctolagus cuniculus]
Length = 601
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|192764316|gb|ACF05702.1| betaCstF-64 variant 1 [Mus musculus]
Length = 604
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|332212188|ref|XP_003255200.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant
[Nomascus leucogenys]
Length = 622
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|351709510|gb|EHB12429.1| Cleavage stimulation factor 64 kDa subunit [Heterocephalus glaber]
Length = 597
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|380798899|gb|AFE71325.1| cleavage stimulation factor subunit 2, partial [Macaca mulatta]
Length = 575
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 16 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 75
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 76 NGREFSGRALRVD--NAASEKNKEELKSL 102
>gi|417403608|gb|JAA48603.1| Putative mrna cleavage and polyadenylation factor i complex subunit
rna15 [Desmodus rotundus]
Length = 647
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|432877330|ref|XP_004073147.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant-like
isoform 2 [Oryzias latipes]
Length = 479
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 31 VFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 90
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L R A+S ++K E +S+
Sbjct: 91 NGREFSGRAL--RVDNAASEKNKEELKSL 117
>gi|26351239|dbj|BAC39256.1| unnamed protein product [Mus musculus]
Length = 642
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|432111364|gb|ELK34639.1| Cleavage stimulation factor subunit 2 tau variant [Myotis davidii]
Length = 641
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|326673799|ref|XP_003199996.1| PREDICTED: cleavage stimulation factor subunit 2-like [Danio rerio]
Length = 488
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 26 VFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 85
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 86 NGREFSGRALRVD--NAASEKNKEELKSL 112
>gi|11762098|gb|AAG40327.1|AF322194_1 variant polyadenylation protein CSTF-64 [Mus musculus]
Length = 630
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|354476121|ref|XP_003500273.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant
isoform 1 [Cricetulus griseus]
Length = 614
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|76253771|ref|NP_956408.2| cleavage stimulation factor subunit 2 [Danio rerio]
gi|41107668|gb|AAH65442.1| Cleavage stimulation factor, 3' pre-RNA, subunit 2 [Danio rerio]
Length = 488
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 26 VFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 85
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 86 NGREFSGRALRVD--NAASEKNKEELKSL 112
>gi|402880821|ref|XP_003903988.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant [Papio
anubis]
Length = 620
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|432877328|ref|XP_004073146.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant-like
isoform 1 [Oryzias latipes]
Length = 494
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 31 VFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 90
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L R A+S ++K E +S+
Sbjct: 91 NGREFSGRAL--RVDNAASEKNKEELKSL 117
>gi|354476123|ref|XP_003500274.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant
isoform 2 [Cricetulus griseus]
Length = 623
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|388452994|ref|NP_001253727.1| cleavage stimulation factor subunit 2 tau variant [Macaca mulatta]
gi|355758732|gb|EHH61510.1| hypothetical protein EGM_21244 [Macaca fascicularis]
gi|383416951|gb|AFH31689.1| cleavage stimulation factor subunit 2 tau variant [Macaca mulatta]
gi|384946038|gb|AFI36624.1| cleavage stimulation factor subunit 2 tau variant [Macaca mulatta]
gi|387541538|gb|AFJ71396.1| cleavage stimulation factor subunit 2 tau variant [Macaca mulatta]
Length = 620
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|410043860|ref|XP_001163035.2| PREDICTED: cleavage stimulation factor subunit 2 tau variant
isoform 4 [Pan troglodytes]
gi|410335357|gb|JAA36625.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau
variant [Pan troglodytes]
gi|410335359|gb|JAA36626.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau
variant [Pan troglodytes]
gi|410335361|gb|JAA36627.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau
variant [Pan troglodytes]
gi|410335363|gb|JAA36628.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau
variant [Pan troglodytes]
Length = 615
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|397469483|ref|XP_003806381.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant [Pan
paniscus]
Length = 615
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|344241215|gb|EGV97318.1| Cleavage stimulation factor 64 kDa subunit, tau variant [Cricetulus
griseus]
Length = 645
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|145536694|ref|XP_001454069.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421813|emb|CAK86672.1| unnamed protein product [Paramecium tetraurelia]
Length = 426
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 84/190 (44%), Gaps = 23/190 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIF-EGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
K + +E + E + D + F ++V +P + L L P LN
Sbjct: 141 KSWVVLECSSKEAKRALVTQDQVQFVNNCKIKVEKPRKF---LERILNPQAKEAELN--- 194
Query: 281 VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD--RDTGNSKGY 338
A E R+++GGLP Y + + +L++SFGT F+LVKD +T SKGY
Sbjct: 195 ------ADQKQEDNTRLYLGGLPTYLRDEDVMKLIQSFGTTKYFNLVKDTTSNTEISKGY 248
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILA--------QAQ 390
F Y+ A T A ALN L++GDK L + + Q S LA Q Q
Sbjct: 249 CFFEYEKTASTAKALKALNNLQIGDKKLKICKKINGRDQPSNYAGSFLASCDLLRIPQVQ 308
Query: 391 QHIAIQKMAL 400
Q + I + AL
Sbjct: 309 QMLTIPQSAL 318
>gi|426364779|ref|XP_004049473.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant-like
[Gorilla gorilla gorilla]
gi|426364781|ref|XP_004049474.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant-like
[Gorilla gorilla gorilla]
Length = 617
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|20380061|gb|AAH28239.1| Cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau
variant [Homo sapiens]
gi|325463311|gb|ADZ15426.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau
variant [synthetic construct]
Length = 616
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|281348298|gb|EFB23882.1| hypothetical protein PANDA_020101 [Ailuropoda melanoleuca]
Length = 612
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|14149675|ref|NP_056050.1| cleavage stimulation factor subunit 2 tau variant [Homo sapiens]
gi|71153234|sp|Q9H0L4.1|CSTFT_HUMAN RecName: Full=Cleavage stimulation factor subunit 2 tau variant;
AltName: Full=CF-1 64 kDa subunit tau variant; AltName:
Full=Cleavage stimulation factor 64 kDa subunit tau
variant; Short=CSTF 64 kDa subunit tau variant; AltName:
Full=TauCstF-64
gi|12053011|emb|CAB66681.1| hypothetical protein [Homo sapiens]
gi|24416591|gb|AAN05429.1| tCstF-64 [Homo sapiens]
gi|119574527|gb|EAW54142.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau
variant [Homo sapiens]
gi|189067256|dbj|BAG36966.1| unnamed protein product [Homo sapiens]
Length = 616
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|410974961|ref|XP_003993907.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant [Felis
catus]
Length = 613
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|355562595|gb|EHH19189.1| hypothetical protein EGK_19854 [Macaca mulatta]
Length = 610
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 8 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 67
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 68 NGREFSGRALRVD--NAASEKNKEELKSL 94
>gi|62896707|dbj|BAD96294.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau
variant variant [Homo sapiens]
Length = 616
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGSIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|343429703|emb|CBQ73275.1| related to Cleavage stimulation factor [Sporisorium reilianum SRZ2]
Length = 391
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 293 GPDR----VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GP R VFVG +PY +E Q+ ++ G + GF LV DRDTG KGYGFC ++DP
Sbjct: 3 GPQRGSRVVFVGNIPYDMSEEQLTDVFREVGKVVGFRLVNDRDTGKFKGYGFCEFEDPET 62
Query: 349 TDIACAALNGLKMGDKTLTVRRA 371
A LN +++G + L + A
Sbjct: 63 AASAVRNLNEVEVGGRPLRISFA 85
>gi|403260042|ref|XP_003922497.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant
[Saimiri boliviensis boliviensis]
Length = 621
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|302695543|ref|XP_003037450.1| hypothetical protein SCHCODRAFT_80935 [Schizophyllum commune H4-8]
gi|300111147|gb|EFJ02548.1| hypothetical protein SCHCODRAFT_80935 [Schizophyllum commune H4-8]
Length = 409
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 98/235 (41%), Gaps = 22/235 (9%)
Query: 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTV 232
AR V+V L + + FF +G N+ V + K +VE RTV
Sbjct: 74 EARSVFVSQLAARLTARDLGYFFED---KLGENTVMDARIVTDRISRRSKGIGYVEFRTV 130
Query: 233 EEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAE 292
+ A+ L G + G+ + V+ L A G NLNL S GGA
Sbjct: 131 DLVDKALDLSGTVVMGLPIMVQLTEAERNRLHAGDG------NLNLPPG--VSAPHGGAM 182
Query: 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIA 352
+++VG L + TE IK++ E FG L DL +D TG SKGY F Y+ +A
Sbjct: 183 ---QLYVGSLHFNLTEADIKQVFEPFGELEFVDLHRDPTTGRSKGYAFVQYKRAEDARMA 239
Query: 353 CAALNGLKMGDKTLTVRRATASSGQSKTEQ-ESI-------LAQAQQHIAIQKMA 399
+ G ++ + L V G + Q ES+ L A + +QK+A
Sbjct: 240 MEQMEGFELAGRQLKVNTVHDKGGVVRYAQTESLDDSGGGNLNAASRQALMQKLA 294
>gi|297686917|ref|XP_002820977.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant [Pongo
abelii]
Length = 625
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|149055454|gb|EDM07038.1| rCG38164 [Rattus norvegicus]
Length = 363
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L R A+S ++K E +S+
Sbjct: 78 NGREFSGRAL--RVDNAASEKNKEELKSL 104
>gi|294936223|ref|XP_002781665.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Perkinsus
marinus ATCC 50983]
gi|239892587|gb|EER13460.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Perkinsus
marinus ATCC 50983]
Length = 482
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 18/205 (8%)
Query: 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP-GDAVV--NVYINHEKKFAFVEMRT 231
++V+VGGLP A++ A+ +FSQ GP D+VV + + + F FV T
Sbjct: 171 KKVFVGGLPREADKPALDAYFSQF---------GPVEDSVVMMDRFTGRSRGFGFVTFET 221
Query: 232 VEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAA----ALGPGQPSPNLNLAAVGLASGA 287
E+ +A + G +V VRR + + T A + G G +P N G G
Sbjct: 222 KEQMLGCVAAAPHVIMGKSVEVRRSINDDGTSTAHERRSAGKGAGAPR-NYDDYGSGKGG 280
Query: 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347
+ P+++FVGGLP T +++ +G L ++ DR TG S+G+G+ Y+D +
Sbjct: 281 HRD-QNPNKLFVGGLPREITSEALRDFFIQYGNLVDCTVITDRMTGQSRGFGYVTYEDSS 339
Query: 348 VTDIACAALNGLKMGDKTLTVRRAT 372
+ A + + K + V+ T
Sbjct: 340 AAEAAISNSANNIIDGKWVDVKHTT 364
>gi|147852616|emb|CAN81690.1| hypothetical protein VITISV_009755 [Vitis vinifera]
Length = 544
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 88/190 (46%), Gaps = 35/190 (18%)
Query: 97 KSLSPS-RSPSKSKRRSGFDMAPPAAAMLPGAAVPGQL----PGV-------PSAVPEMA 144
K+ SP+ RSP K + +G+D+ P + +V L P V PSAVP
Sbjct: 343 KTPSPTNRSPEK--KNAGWDLPPSRTDGMNAGSVLSSLQVLKPTVSSNADELPSAVPVA- 399
Query: 145 QNMLPFGATQLGAFPLMPV---------------QVMTQQATRHARRVYVGGLPPLANEQ 189
+P AT A P +P + QATR RR+YV LP ++E+
Sbjct: 400 ---VPVTATT--AKPPLPRIYSDAVSKNKNVSIDSIQLTQATRPMRRLYVENLPVSSSEK 454
Query: 190 AIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249
A+ + + + G N ++ I+ EK A VE T E+AS A++ DGI F G
Sbjct: 455 ALMECLNNFLLSSGINHVQGTPPCISCIIHKEKGQALVEFLTPEDASAALSFDGISFSGS 514
Query: 250 AVRVRRPTDY 259
+++RRP D+
Sbjct: 515 ILKIRRPKDF 524
>gi|358421036|ref|XP_001254105.2| PREDICTED: cleavage stimulation factor subunit 2-like [Bos taurus]
Length = 331
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|195050249|ref|XP_001992854.1| GH13506 [Drosophila grimshawi]
gi|193899913|gb|EDV98779.1| GH13506 [Drosophila grimshawi]
Length = 628
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 83/204 (40%), Gaps = 28/204 (13%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF---AFVE 228
R AR V+ L + + FFS V G V + N K+F A++E
Sbjct: 268 RDARTVFCIQLSQRVRARDLEEFFSSV---------GKVRDVRLITCNKTKRFKGIAYIE 318
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
E + A+ L G GV + V+ L +A P QP +
Sbjct: 319 FEDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQSAPPPFQPKLHT------------ 366
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF Y +
Sbjct: 367 ----GPMRLYVGSLHFNITEDMLRGIFEPFGKIDVIQLIMDNETGRSKGYGFITYHNADD 422
Query: 349 TDIACAALNGLKMGDKTLTVRRAT 372
A LNG ++ + + V T
Sbjct: 423 AKKALEQLNGFELAGRPMKVGNVT 446
>gi|68076889|ref|XP_680364.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56501286|emb|CAI04220.1| conserved hypothetical protein [Plasmodium berghei]
Length = 652
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 90/204 (44%), Gaps = 24/204 (11%)
Query: 150 FGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP 209
FG ++LG + + A + AR +YVG +P + Q I F + + +
Sbjct: 195 FGISELG------LSTIDANAEKTARELYVGNIPQNIDIQEIVKFLNTCLLILYNKENEN 248
Query: 210 GDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRR----PTDYNPTLAA 265
+ + I + ++AFVE R++++ SN M L+GI F +R+ R P +Y +
Sbjct: 249 ENICLKACIRGDTRYAFVEFRSLQDTSNCMLLNGIYFYTNNLRIGRPKTFPIEYTKLIPP 308
Query: 266 ALGPGQPSPNLNLAAVGLASGAIGGAEGPD--------------RVFVGGLPYYFTETQI 311
A P + L+ +G+ + AI + ++ V + +I
Sbjct: 309 ATIPTIDTYYLSQGLIGIKAFAIFHQNKDETKNEYIPVDMIKLQKLCVSNISKNNETNKI 368
Query: 312 KELLESFGTLHGFDLVKDRDTGNS 335
KELLE+FG + GF+ + + ++
Sbjct: 369 KELLEAFGEIQGFEFFEGEENSDT 392
>gi|125774537|ref|XP_001358527.1| GA20525 [Drosophila pseudoobscura pseudoobscura]
gi|54638266|gb|EAL27668.1| GA20525 [Drosophila pseudoobscura pseudoobscura]
Length = 418
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++KE+ G + LV DR++G KG+GFC Y+D A L
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESIL 386
NG ++G +TL V A + +S+ E + +L
Sbjct: 78 NGYEIGGRTLRVD--NACTEKSRMEMQQLL 105
>gi|148688462|gb|EDL20409.1| cleavage stimulation factor, 3' pre-RNA subunit 2 [Mus musculus]
Length = 363
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L R A+S ++K E +S+
Sbjct: 78 NGREFSGRAL--RVDNAASEKNKEELKSL 104
>gi|195145742|ref|XP_002013849.1| GL24357 [Drosophila persimilis]
gi|194102792|gb|EDW24835.1| GL24357 [Drosophila persimilis]
Length = 418
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++KE+ G + LV DR++G KG+GFC Y+D A L
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESIL 386
NG ++G +TL V A + +S+ E + +L
Sbjct: 78 NGYEIGGRTLRVD--NACTEKSRMEMQQLL 105
>gi|17137710|ref|NP_477453.1| cleavage stimulation factor 64 kilodalton subunit [Drosophila
melanogaster]
gi|5713194|gb|AAD47839.1|AF170082_1 cleavage stimulation factor 64 kilodalton subunit [Drosophila
melanogaster]
gi|23171661|gb|AAF55577.2| cleavage stimulation factor 64 kilodalton subunit [Drosophila
melanogaster]
gi|205360993|gb|ACI03573.1| FI01908p [Drosophila melanogaster]
Length = 419
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++KE+ G + LV DR++G KG+GFC Y+D A L
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILAQAQ 390
NG ++G +TL V A + +S+ E + +L Q
Sbjct: 78 NGYEIGGRTLRVD--NACTEKSRMEMQQLLQGPQ 109
>gi|325189600|emb|CCA24085.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 358
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 19/142 (13%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++E+ G + F LV DRD+G KGYGFC Y D A A L
Sbjct: 17 VFVGNIPYDVTEEMLREIFSEAGAVMNFRLVTDRDSGKPKGYGFCEYADGATALSAMRNL 76
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSG---MNTLGGGMS 413
NG ++ + L V A S Q A++K A ++G + + ++
Sbjct: 77 NGYEINGRNLRVDFADGGERSSNPAQ-----------AVEKTAAGSNGEMMIQAIENAVA 125
Query: 414 LFGETLAKVLCLTEMMKSMKKY 435
+G L EM+ S+K++
Sbjct: 126 QYG-----TLKTYEMLISLKEH 142
>gi|195343246|ref|XP_002038209.1| GM17877 [Drosophila sechellia]
gi|194133059|gb|EDW54627.1| GM17877 [Drosophila sechellia]
Length = 419
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++KE+ G + LV DR++G KG+GFC Y+D A L
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILAQAQ 390
NG ++G +TL V A + +S+ E + +L Q
Sbjct: 78 NGYEIGGRTLRV--DNACTEKSRMEMQQLLQGPQ 109
>gi|195497709|ref|XP_002096214.1| GE25546 [Drosophila yakuba]
gi|194182315|gb|EDW95926.1| GE25546 [Drosophila yakuba]
Length = 414
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++KE+ G + LV DR++G KG+GFC Y+D A L
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESIL 386
NG ++G +TL V A + +S+ E + +L
Sbjct: 78 NGYEIGGRTLRV--DNACTEKSRMEMQQLL 105
>gi|195569859|ref|XP_002102926.1| GD19237 [Drosophila simulans]
gi|194198853|gb|EDX12429.1| GD19237 [Drosophila simulans]
Length = 419
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++KE+ G + LV DR++G KG+GFC Y+D A L
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILAQAQ 390
NG ++G +TL V A + +S+ E + +L Q
Sbjct: 78 NGYEIGGRTLRV--DNACTEKSRMEMQQLLQGPQ 109
>gi|195395200|ref|XP_002056224.1| GJ10336 [Drosophila virilis]
gi|194142933|gb|EDW59336.1| GJ10336 [Drosophila virilis]
Length = 427
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++KE+ G + LV DR++G KG+GFC Y+D A L
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILAQAQ 390
NG ++G +TL R A + +S+ E + +L Q
Sbjct: 78 NGYEIGGRTL--RVDNACTEKSRMEMQQLLQGPQ 109
>gi|393247915|gb|EJD55422.1| splicing factor, CC1-like protein [Auricularia delicata TFB-10046
SS5]
Length = 581
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 86/196 (43%), Gaps = 15/196 (7%)
Query: 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTV 232
AR V+V L + + FF +G + V + K +VE+R++
Sbjct: 247 EARSVFVSQLAARLTARDLGYFFED---KLGEGAVRDARIVTDRISRRSKGIGYVELRSI 303
Query: 233 EEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAE 292
+ + A+ L G I G+ + V+ + A NLNL S GGA
Sbjct: 304 DLVTKALDLSGTIVMGLPIMVQLTEAERNRVHAG-------ENLNLPPG--VSAPQGGAM 354
Query: 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIA 352
+++VG L + TE IK++ E FG L DL +D TG SKGY F Y+ +A
Sbjct: 355 ---QLYVGSLHFNLTEQDIKQVFEPFGELDFVDLHRDPGTGRSKGYAFVQYKRAEDAKMA 411
Query: 353 CAALNGLKMGDKTLTV 368
++G ++ +TL V
Sbjct: 412 LEQMDGFELAGRTLRV 427
>gi|403362995|gb|EJY81233.1| hypothetical protein OXYTRI_21372 [Oxytricha trifallax]
Length = 411
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 90/202 (44%), Gaps = 15/202 (7%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRT 231
+H R++YVG LPP Q + + + + N PG +++ +I+ + +AFVE RT
Sbjct: 70 KHERQLYVGNLPPTITHQKLVELLNIAVCVMKLN-VKPGQPILSAWISQDGHYAFVEFRT 128
Query: 232 VEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGA 291
+EE N L+ I +G ++V + T + + P N V + S A+ +
Sbjct: 129 IEECMNGHQLNQIAIQGHPLKVGK-TRIQNQINSQNPHNFPCQNSANQQVLMLSQALSNS 187
Query: 292 EGPDRVFVGGLPYYF---TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
+ + +P ++ TE +K LL+ FG + + ++ +C Y+
Sbjct: 188 -----IEISNIPKFYENDTEALVK-LLKMFGVYRQYQM----KALQNQIICYCEYESDEQ 237
Query: 349 TDIACAALNGLKMGDKTLTVRR 370
T A N L + + L VRR
Sbjct: 238 TKKALNGFNDLLVKESKLQVRR 259
>gi|194743216|ref|XP_001954096.1| GF16912 [Drosophila ananassae]
gi|190627133|gb|EDV42657.1| GF16912 [Drosophila ananassae]
Length = 415
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++KE+ G + LV DR++G KG+GFC Y+D A L
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESIL 386
NG ++G +TL V A + +S+ E + +L
Sbjct: 78 NGYEIGGRTLRV--DNACTEKSRMEMQQLL 105
>gi|195397963|ref|XP_002057597.1| GJ18017 [Drosophila virilis]
gi|194141251|gb|EDW57670.1| GJ18017 [Drosophila virilis]
Length = 599
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 83/204 (40%), Gaps = 28/204 (13%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF---AFVE 228
R AR V+ L + + FFS V G V + N K+F A++E
Sbjct: 239 RDARTVFCIQLSQRVRARDLEEFFSSV---------GKVRDVRLITCNKTKRFKGIAYIE 289
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
E + A+ L G GV + V+ L +A P QP +
Sbjct: 290 FEDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQSAPPPFQPKAHT------------ 337
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF Y +
Sbjct: 338 ----GPMRLYVGSLHFNITEDMLRGIFEPFGKIDVIQLIMDTETGRSKGYGFITYHNADD 393
Query: 349 TDIACAALNGLKMGDKTLTVRRAT 372
A LNG ++ + + V T
Sbjct: 394 AKKALEQLNGFELAGRPMKVGNVT 417
>gi|194900156|ref|XP_001979623.1| GG22991 [Drosophila erecta]
gi|190651326|gb|EDV48581.1| GG22991 [Drosophila erecta]
Length = 416
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++KE+ G + LV DR++G KG+GFC Y+D A L
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILAQAQ 390
NG ++G +TL V A + +S+ E + +L Q
Sbjct: 78 NGYEIGGRTLRV--DNACTEKSRMEMQQLLQGPQ 109
>gi|195037535|ref|XP_001990216.1| GH18352 [Drosophila grimshawi]
gi|193894412|gb|EDV93278.1| GH18352 [Drosophila grimshawi]
Length = 430
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++KE+ G + LV DR++G KG+GFC Y+D A L
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESIL 386
NG ++G +TL V A + +S+ E + +L
Sbjct: 78 NGYEIGGRTLRVD--NACTEKSRMEMQQLL 105
>gi|195108753|ref|XP_001998957.1| GI23336 [Drosophila mojavensis]
gi|193915551|gb|EDW14418.1| GI23336 [Drosophila mojavensis]
Length = 428
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++KE+ G + LV DR++G KG+GFC Y+D A L
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILAQAQ 390
NG ++G +TL V A + +S+ E + +L Q
Sbjct: 78 NGYEIGGRTLRV--DNACTEKSRMEMQQLLQGPQ 109
>gi|28557621|gb|AAO45216.1| RE27227p [Drosophila melanogaster]
Length = 437
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++KE+ G + LV DR++G KG+GFC Y+D A L
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILAQAQ 390
NG ++G +TL V A + +S+ E + +L Q
Sbjct: 78 NGYEIGGRTLRVD--NACTEKSRMEMQQLLQGPQ 109
>gi|195452858|ref|XP_002073531.1| GK14167 [Drosophila willistoni]
gi|194169616|gb|EDW84517.1| GK14167 [Drosophila willistoni]
Length = 401
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++KE+ G + LV DR++G KG+GFC Y+D A L
Sbjct: 19 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 78
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILAQAQ 390
NG ++G +TL R A + +S+ E + +L Q
Sbjct: 79 NGYEIGGRTL--RVDNACTEKSRMEMQQLLQGPQ 110
>gi|399216439|emb|CCF73127.1| unnamed protein product [Babesia microti strain RI]
Length = 424
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 111/255 (43%), Gaps = 39/255 (15%)
Query: 150 FGATQLGAFPL-MPVQVMTQQATRHARRVYVGGLPP------LANEQA-IATFFSQVMTA 201
FG G+ L +P + +A R RR+Y+G +P L + Q+ I F + +
Sbjct: 34 FGFDSSGSSALAIPAADLDPEAERRHRRLYIGNVPAGNHNTNLGSSQSDIVAFLNGALLT 93
Query: 202 IGGNS---AGPGDAVVNVY--INHEKKFAFVEMRTVEEASNAMALDGII-------FEGV 249
+ N+ A P D + N E +F F+E+R V+ + +DGI + G
Sbjct: 94 VLSNTGMPATPADTPITKCESFNSENRFCFIELRNVDVTLVCLKMDGISLVDSGINYNGN 153
Query: 250 AVRVRRPTDYNP----TLAAALGPG--QPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLP 303
A+++ RP+DY P LA + P QP +A ++ + +P
Sbjct: 154 ALKISRPSDYVPPSNNELATQMQPTIQQPPRGFTMALQVF------------KLHIQNIP 201
Query: 304 YYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 363
E + EL++ FG + ++KD TG K F ++D + A AL G ++
Sbjct: 202 TTMAEDGVLELVKEFGDVKYVYIIKDT-TGQHKNTAFVEFKDSVSLEPASKALTGKEVEG 260
Query: 364 KTLTVRRATASSGQS 378
++LT + T++ +
Sbjct: 261 QSLTAKIVTSNQADT 275
>gi|301100496|ref|XP_002899338.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262104255|gb|EEY62307.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 414
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 42/72 (58%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE +KE+ G++ F LV DR+TG KGYGFC Y D A A L
Sbjct: 15 VFVGNIPYDVTEDMLKEIFSEAGSVMNFRLVTDRETGKPKGYGFCEYADGATALSAMRNL 74
Query: 357 NGLKMGDKTLTV 368
NG ++ + L V
Sbjct: 75 NGYEINGRNLRV 86
>gi|255089613|ref|XP_002506728.1| predicted protein [Micromonas sp. RCC299]
gi|226522001|gb|ACO67986.1| predicted protein [Micromonas sp. RCC299]
Length = 317
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 48/81 (59%)
Query: 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 353
P +VFVG +PY TE +++++ G +H F LV DR+TG KGYGFC Y D A + A
Sbjct: 5 PYQVFVGNVPYDATEERLRDMFSEVGPVHDFRLVTDRETGKLKGYGFCEYMDLATAESAK 64
Query: 354 AALNGLKMGDKTLTVRRATAS 374
LNG + + L V A A+
Sbjct: 65 RNLNGREYNGRNLRVDFADAA 85
>gi|395863336|ref|XP_003803852.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Otolemur
garnettii]
gi|395863340|ref|XP_003803854.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Otolemur
garnettii]
Length = 514
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 86/217 (39%), Gaps = 24/217 (11%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
P+ +T + R AR V+ L + + FFS V + +
Sbjct: 126 PIDNLTPE-ERDARTVFCMQLAARIRPRDLEAFFSTV------GKVRDVRMISDRNARRS 178
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + VR Q N A
Sbjct: 179 KGIAYVEFVDVSSVPLAIGLTGQRVFGVPILVR--------------ASQAEKN---RAA 221
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L TE ++ + E FG L L+KD +TG SKGYGF
Sbjct: 222 AMANNLQKGRAGPMRLYVGSLHLNITEAMLRGIFEPFGRLESIQLMKDSETGRSKGYGFI 281
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
+ D A LNGL++ + + V T + S
Sbjct: 282 TFSDSECAKKALEQLNGLELAGRPMKVGHVTEGTDAS 318
>gi|241997552|ref|XP_002433425.1| RNA recognition motif-containing protein [Ixodes scapularis]
gi|215490848|gb|EEC00489.1| RNA recognition motif-containing protein [Ixodes scapularis]
Length = 466
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYKDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILA 387
N + + L V A+S +SK E +++ A
Sbjct: 78 NAFDLNGRPLRVD--NAASEKSKEELKNLQA 106
>gi|395863338|ref|XP_003803853.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Otolemur
garnettii]
gi|395863342|ref|XP_003803855.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Otolemur
garnettii]
Length = 487
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 86/217 (39%), Gaps = 24/217 (11%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
P+ +T + R AR V+ L + + FFS V +A
Sbjct: 99 PIDNLTPEE-RDARTVFCMQLAARIRPRDLEAFFSTVGKVRDVRMISDRNA------RRS 151
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + VR Q N A
Sbjct: 152 KGIAYVEFVDVSSVPLAIGLTGQRVFGVPILVR--------------ASQAEKN---RAA 194
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L TE ++ + E FG L L+KD +TG SKGYGF
Sbjct: 195 AMANNLQKGRAGPMRLYVGSLHLNITEAMLRGIFEPFGRLESIQLMKDSETGRSKGYGFI 254
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 378
+ D A LNGL++ + + V T + S
Sbjct: 255 TFSDSECAKKALEQLNGLELAGRPMKVGHVTEGTDAS 291
>gi|449665135|ref|XP_002159315.2| PREDICTED: cleavage stimulation factor subunit 2-like [Hydra
magnipapillata]
Length = 413
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY ++ Q+K++ G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 28 VFVGNIPYEASDDQLKDIFSQAGPVLSFRLVYDRETGKPKGYGFCEYKDSETAQSAMRNL 87
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESIL 386
NG ++ + L V A + G + +++L
Sbjct: 88 NGTEIHGRQLRVDSAASQKGNGVEDPKALL 117
>gi|194758325|ref|XP_001961412.1| GF14957 [Drosophila ananassae]
gi|190615109|gb|EDV30633.1| GF14957 [Drosophila ananassae]
Length = 594
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 81/204 (39%), Gaps = 28/204 (13%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF---AFVE 228
R AR V+ L + + FFS V G V + N K+F A++E
Sbjct: 234 RDARTVFCIQLSQRVRARDLEEFFSSV---------GKVRDVRLILCNKTKRFKGIAYIE 284
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
E + A+ L G GV + V+ L A QP +
Sbjct: 285 FEDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHT------------ 332
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF Y +
Sbjct: 333 ----GPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADD 388
Query: 349 TDIACAALNGLKMGDKTLTVRRAT 372
A LNG ++ + + V T
Sbjct: 389 AKKALEQLNGFELAGRLMKVGNVT 412
>gi|388853962|emb|CCF52460.1| related to Cleavage stimulation factor [Ustilago hordei]
Length = 402
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 293 GPDR----VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GP R VFVG +PY +E Q+ ++ G + GF LV DR+TG KGYGFC ++DP
Sbjct: 3 GPQRGSRVVFVGNIPYDMSEEQLTDVFREVGKVVGFRLVNDRETGKFKGYGFCEFEDPET 62
Query: 349 TDIACAALNGLKMGDKTLTVRRA 371
A LN +++G + L + A
Sbjct: 63 AASAVRNLNEVEVGGRALRISFA 85
>gi|90085597|dbj|BAE91539.1| unnamed protein product [Macaca fascicularis]
Length = 295
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD + A +A+
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD---QETALSAM 74
Query: 357 NGLKMGDKTLTVRRATAS 374
L D ++ RA AS
Sbjct: 75 RNLN--DAPESITRAVAS 90
>gi|225711846|gb|ACO11769.1| Cleavage stimulation factor 64 kDa subunit [Lepeophtheirus
salmonis]
Length = 330
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++K++ G + F LV DR+ G KGYGFC Y+D + A L
Sbjct: 18 VFVGNIPYEATEEKLKDIFSEVGPVTSFKLVYDRENGKPKGYGFCEYKDADMALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQ---SKTEQESIL 386
NG ++ +TL V A + +K E E I+
Sbjct: 78 NGYEIEGRTLRVDNACTEKNRLEMAKGEAEEIV 110
>gi|294948294|ref|XP_002785691.1| splicing factor u2af large subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239899714|gb|EER17487.1| splicing factor u2af large subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 370
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 1/133 (0%)
Query: 239 MALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPD-RV 297
M L+GI +G + + RP YN + + + + + S A G + ++
Sbjct: 1 MRLNGIDLDGRKLAITRPHGYNKEDPSKSITAEDIQKVTIEELCGGSSTKKTAPGSNLQL 60
Query: 298 FVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN 357
+ LP TET +++LLE FG L L++D+ TG SKGYGFC ++DP D AL+
Sbjct: 61 GIYHLPPVMTETYLRDLLEQFGALTMVSLIRDKTTGLSKGYGFCQFEDPNDADRCLYALD 120
Query: 358 GLKMGDKTLTVRR 370
+G+ +L+V R
Sbjct: 121 QFVLGNYSLSVTR 133
>gi|294905728|ref|XP_002777665.1| Splicing factor U2AF 65 kDa subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239885556|gb|EER09481.1| Splicing factor U2AF 65 kDa subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 680
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 117/263 (44%), Gaps = 39/263 (14%)
Query: 102 SRSPSKSKRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLM 161
SRSPS+ ++ FD P A QL S +P Q ++ +T AF
Sbjct: 184 SRSPSEKRKPFKFDSPPKELA--------AQLAAGTSMLP---QTVVSSSSTIKEAFNA- 231
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
+ + + AR +Y+G +PP + + + + +G N A PG +V+ ++ +
Sbjct: 232 ---TLAAERQKIARELYIGQIPPGISAAELIDVLNDGLMNMGAN-AMPGRPIVHGWLGGD 287
Query: 222 KKFAFVEMRTVEEASNAMA-LDGIIFE--GVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
FAFVE RT EEAS A+ L+G + GV+++V RP Y +GP P ++N
Sbjct: 288 GLFAFVEFRTPEEASIALERLNGHQLKSYGVSIKVGRPKGY-------MGPAAPDDSVNA 340
Query: 279 AAVGLAS------GAIGGAE---GPDRVFVGGLPYYFTETQIKELLE--SFGTLHGFDLV 327
G A+ G I AE R+ + G P +E IK L S G + +L+
Sbjct: 341 YTAGHAATSSTTPGGISAAEVSSDTSRLCLIGFPLKASEHSIKRALRNASKGEIRHLELL 400
Query: 328 KDRDTGNSKGYGFCVYQDPAVTD 350
K T N + V++ + D
Sbjct: 401 K--HTWNDEEIVMAVFECVNIED 421
>gi|124360616|gb|ABN08615.1| hypothetical protein MtrDRAFT_AC157507g26v2 [Medicago truncatula]
Length = 64
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 36/39 (92%)
Query: 248 GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASG 286
GVAVRVRRPTDYNP+LAA LGP QPS NLNL+AVGL++G
Sbjct: 26 GVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAG 64
>gi|50552688|ref|XP_503754.1| YALI0E09889p [Yarrowia lipolytica]
gi|49649623|emb|CAG79345.1| YALI0E09889p [Yarrowia lipolytica CLIB122]
Length = 601
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 14/214 (6%)
Query: 169 QATRHARRVYVGGLPP-LANEQAIATFFSQVMTAIGGNSAGPGDAVVN-VYINHEKKFAF 226
+ +R ARR+ + G+P + AI +FF+ + G G + +V+ VY +
Sbjct: 260 EFSRVARRLILSGIPADQIDTVAIKSFFTDFIE--GLELQGSKERIVDGVYKHPRLPEVL 317
Query: 227 VEMRTVEEASNAMALDG--IIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLA 284
VE + E A+ A+AL G I + G + +RRP++Y + P ++ ++
Sbjct: 318 VEFFSAEMATLALALSGLGINYSGPPISIRRPSNY-------ICPTPERSEVSRRSLDEE 370
Query: 285 SGAIGGAEGPD-RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343
E + ++ V +P+ E Q+++L SFG L F L++ + S G Y
Sbjct: 371 KEVASVVEDSNTKIIVWDIPFNVEEDQVRQLTASFGELSAFQLIRQLPSRESAGIALVDY 430
Query: 344 QDPAVTDIACAALNGLKMGDKTLTVRRATASSGQ 377
+DP V A + L+G +G K L V A Q
Sbjct: 431 KDPEVVKDAVSGLSGQVIGGKNLKVMLACEGPTQ 464
>gi|403364994|gb|EJY82272.1| Snrnp splicing factor (U2AF), putative [Oxytricha trifallax]
Length = 411
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 102/219 (46%), Gaps = 20/219 (9%)
Query: 80 HRHRSRSHSSDRFRNRSKSLSPSRSPSKSKRRSG-----FDMAPPAAAMLPGAAVPGQLP 134
HR +SR + +R R+R + R +K+ G FD +PP L
Sbjct: 48 HREKSRDRNGNRGRDREREKDRDRGGRDNKKGGGRDDFRFD-SPPKDHELT--------K 98
Query: 135 GVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATF 194
G+ +A + + + L + M + Q + R++YVG LPP ++ +
Sbjct: 99 GIMAAAASIGGGTIANAQSILQSIHSMSMA----QTAKIDRKLYVGNLPPGITQRMLIDV 154
Query: 195 FSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVR 254
++ M ++ PG+ VV+ +I+ + +AFVE RT EEA++ L G+ + +++
Sbjct: 155 VNEAMLSLNVIEE-PGNPVVSAWISSDSHYAFVEFRTAEEANHGFNLQGMNIQNNEIKIG 213
Query: 255 RPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEG 293
RP Y+ T+ A+G + +N+ A+ A+ G +G
Sbjct: 214 RPKAYSGTM-NAIGLMASAGGMNVQGGSFANAALMGMKG 251
>gi|301781268|ref|XP_002926045.1| PREDICTED: probable RNA-binding protein 23-like isoform 1
[Ailuropoda melanoleuca]
Length = 446
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 68/151 (45%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 209 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 252
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 253 -MANNLQKGSSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 311
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V + T
Sbjct: 312 TFSDSECARRALEQLNGFELAGRPMRVGQVT 342
>gi|302757135|ref|XP_002961991.1| hypothetical protein SELMODRAFT_9008 [Selaginella moellendorffii]
gi|302775356|ref|XP_002971095.1| hypothetical protein SELMODRAFT_9010 [Selaginella moellendorffii]
gi|300161077|gb|EFJ27693.1| hypothetical protein SELMODRAFT_9010 [Selaginella moellendorffii]
gi|300170650|gb|EFJ37251.1| hypothetical protein SELMODRAFT_9008 [Selaginella moellendorffii]
Length = 80
Score = 69.7 bits (169), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 46/75 (61%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
++VG LP + + +K L SFG + ++KDR TG SKGYGF + DPA A ++
Sbjct: 6 LYVGYLPATYDDESLKRLFSSFGQIEEVKVIKDRTTGASKGYGFVKFTDPAAASQAVFSM 65
Query: 357 NGLKMGDKTLTVRRA 371
NG K+ DKTL VR A
Sbjct: 66 NGWKIEDKTLAVRIA 80
>gi|34810648|pdb|1P1T|A Chain A, Nmr Structure Of The N-Terminal Rrm Domain Of Cleavage
Stimulation Factor 64 Kda Subunit
Length = 104
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 11 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 70
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 71 NGREFSGRALRV--DNAASEKNKEELKSL 97
>gi|402875680|ref|XP_003901625.1| PREDICTED: probable RNA-binding protein 23 [Papio anubis]
Length = 497
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 68/151 (45%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 262 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 305
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG+SKGYGF
Sbjct: 306 -MANNLQKGSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFI 364
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 365 TFSDSECARRALEQLNGFELAGRPMRVGHVT 395
>gi|348667221|gb|EGZ07047.1| hypothetical protein PHYSODRAFT_251824 [Phytophthora sojae]
Length = 419
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 42/72 (58%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE +KE+ G++ F LV DR+TG KGYGFC Y D A A L
Sbjct: 15 VFVGNIPYDVTEDMLKEIFSEAGSVVNFRLVTDRETGKPKGYGFCEYADGATALSAMRNL 74
Query: 357 NGLKMGDKTLTV 368
NG ++ + L V
Sbjct: 75 NGYEINGRNLRV 86
>gi|291228918|ref|XP_002734426.1| PREDICTED: cleavage stimulation factor subunit 2-like [Saccoglossus
kowalevskii]
Length = 220
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 286 GAIGGAEGPDR----VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
A+G + DR VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC
Sbjct: 2 SAVGQSAATDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFC 61
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSK 379
Y+D A L+G ++ + L V A + + +
Sbjct: 62 EYKDQETALSAMRNLSGYELNGRQLRVDNAASEKNKEE 99
>gi|73962357|ref|XP_537365.2| PREDICTED: probable RNA-binding protein 23 isoform 1 [Canis lupus
familiaris]
Length = 445
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 208 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 251
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 252 -MANNLQKGSSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 310
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 311 TFSDSECARRALEQLNGFELAGRPMRVGHVT 341
>gi|301781270|ref|XP_002926046.1| PREDICTED: probable RNA-binding protein 23-like isoform 2
[Ailuropoda melanoleuca]
Length = 430
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 68/151 (45%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 193 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 236
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 237 -MANNLQKGSSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 295
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V + T
Sbjct: 296 TFSDSECARRALEQLNGFELAGRPMRVGQVT 326
>gi|395859409|ref|XP_003802032.1| PREDICTED: probable RNA-binding protein 23 [Otolemur garnettii]
Length = 449
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 212 KGIAYVEFCEIQSVPLAIGLTGQQLLGVPIIVQASQAEKNRLAA---------------- 255
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP +FVG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 256 -MANNLQKGSSGPMHLFVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 314
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V + T
Sbjct: 315 TFSDSECARRALEQLNGFELAGRPMKVGQVT 345
>gi|82794077|ref|XP_728296.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23484570|gb|EAA19861.1| KED [Plasmodium yoelii yoelii]
Length = 858
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 26/197 (13%)
Query: 150 FGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP 209
FG +LG + + A + AR +YVG +P + Q I F + + +
Sbjct: 396 FGIPELG------LSTIDANAEKTARELYVGNIPQNIDIQEIVKFLNTCLLILYNKENEN 449
Query: 210 GDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRR----PTDYNPTLAA 265
+ + I + ++AFVE R++++ SN M L+GI F +R+ R P +Y +
Sbjct: 450 ENICLKACIRGDTRYAFVEFRSLQDTSNCMLLNGIYFYTNNLRIGRPKTFPIEYTKLIPP 509
Query: 266 ALGPGQPSPNLNLAAVGLASGAIGGAEGPD----------------RVFVGGLPYYFTET 309
A P + L+ VG+ + AI + ++ V +
Sbjct: 510 ATIPTIDTYYLSQGLVGIKAFAIFHQNKDENKNEYHHLPVDMIKLQKLCVSNISKNNETN 569
Query: 310 QIKELLESFGTLHGFDL 326
+IKELLE+FG + F+
Sbjct: 570 KIKELLEAFGDIQTFEF 586
>gi|427798067|gb|JAA64485.1| Putative mrna cleavage and polyadenylation factor i complex subunit
rna15, partial [Rhipicephalus pulchellus]
Length = 377
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYKDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILA 387
N + + L V A+S +SK E +++ A
Sbjct: 78 NAFDLNGRPLRVD--NAASEKSKEELKNLQA 106
>gi|145523992|ref|XP_001447829.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415351|emb|CAK80432.1| unnamed protein product [Paramecium tetraurelia]
Length = 419
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 22/204 (10%)
Query: 81 RHRSRSHSSDRFRNR---SKSLSPSRSPSKSKRRSGFDMAPPAAAM-----------LPG 126
+ RSR+ S ++ + R K +P++ ++ R FD +PP + L
Sbjct: 41 KKRSRNVSKEKEKKRDEFQKPKAPTKQNAEQSRGFRFD-SPPKDPLQNTPFSNFKSKLID 99
Query: 127 AAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQ---QATRHA-RRVYVGGL 182
G+ + A P QN L PL+ +Q + Q QA A R++YVG L
Sbjct: 100 QVSLGEFETILPANP--LQNPLASLEALQAMTPLIQMQRLQQLRAQADVKADRKLYVGNL 157
Query: 183 PPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALD 242
PP + + + F +Q + +G +S G ++ N +I+ F F+E R+ EEA+ L
Sbjct: 158 PPNSQPKELQDFLNQTLLKMGVSSEHAG-SICNCWIDSNGHFGFIEFRSPEEATQGFILK 216
Query: 243 GIIFEGVAVRVRRPTDYNPTLAAA 266
+IF+G +++ RP + +LAA
Sbjct: 217 DVIFKGHQLKIGRPKSFLTSLAAV 240
>gi|294877868|ref|XP_002768167.1| Nucleolysin TIAR, putative [Perkinsus marinus ATCC 50983]
gi|239870364|gb|EER00885.1| Nucleolysin TIAR, putative [Perkinsus marinus ATCC 50983]
Length = 474
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 22/208 (10%)
Query: 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP-GDAVV--NVYINHEKKFAFVEMRT 231
++V+VGGLP A++ A+ +FSQ GP D+VV + + + F FV T
Sbjct: 157 KKVFVGGLPREADKPALDEYFSQF---------GPVEDSVVMMDRFTGRSRGFGFVTFET 207
Query: 232 VEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAA----ALGPGQPSPNLNLAAVGLASGA 287
E+ +A + G V VRR + + T A + G G +P + +SG
Sbjct: 208 KEQMLGCVAAAPHVIMGKTVEVRRSINDDGTSTANERRSAGKGSGAPR---SYDDYSSGK 264
Query: 288 IGGA---EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQ 344
G + P+++FVGGLP T +++ +G L ++ DR TG S+G+G+ Y+
Sbjct: 265 GKGGHRDQNPNKLFVGGLPREVTSDVLRDFFIQYGNLVDCTVITDRMTGQSRGFGYITYE 324
Query: 345 DPAVTDIACAALNGLKMGDKTLTVRRAT 372
D A + A + + K + V+ T
Sbjct: 325 DLAAAEAAISNSANNVIDGKWVDVKHTT 352
>gi|313243391|emb|CBY42167.1| unnamed protein product [Oikopleura dioica]
Length = 199
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 56/96 (58%), Gaps = 6/96 (6%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA- 355
VFVG +PY TE QI+++ G + F LV DR+TG KGYGFC Y+D TD A +A
Sbjct: 27 VFVGNIPYEATEEQIRDIFNEVGVVLSFRLVYDRETGKPKGYGFCEYKD---TDTAMSAM 83
Query: 356 --LNGLKMGDKTLTVRRATASSGQSKTEQESILAQA 389
LN ++ + L V AT G K + ++ ++++
Sbjct: 84 RNLNTRELHGRNLRVDHATRDHGVEKEQPQASVSRS 119
>gi|281343373|gb|EFB18957.1| hypothetical protein PANDA_015655 [Ailuropoda melanoleuca]
Length = 369
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 68/151 (45%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 132 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 175
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 176 -MANNLQKGSSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 234
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V + T
Sbjct: 235 TFSDSECARRALEQLNGFELAGRPMRVGQVT 265
>gi|270007747|gb|EFA04195.1| hypothetical protein TcasGA2_TC014444 [Tribolium castaneum]
Length = 522
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 97/230 (42%), Gaps = 32/230 (13%)
Query: 149 PFGA---TQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGN 205
PFG + LG PV+ ++ + R AR V+V L + + FFS
Sbjct: 136 PFGRRNRSPLGLRSNSPVEELSPE-ERDARTVFVMQLSQRIRARDLEEFFS--------- 185
Query: 206 SAGPGDAVVNVYINHEKKF---AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPT 262
S G V + N ++F A++E + E + A+ L G GV + V+ T
Sbjct: 186 SVGKVRDVRLIVCNKTRRFKGIAYIEFKDPESVTLALGLSGQKLLGVPIIVQH------T 239
Query: 263 LAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 322
A G PNL GP R++VG L + TE ++ + E FG +
Sbjct: 240 QAEKNRMGNSMPNL----------MPKNMTGPMRLYVGSLHFNITEDMLRSIFEPFGKID 289
Query: 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
L+ D +TG SKGYGF +++ A LNG ++ + + V T
Sbjct: 290 NIQLIMDPETGRSKGYGFIAFRNCEDAKKALEQLNGFELAGRPMKVGNVT 339
>gi|50553814|ref|XP_504318.1| YALI0E23628p [Yarrowia lipolytica]
gi|49650187|emb|CAG79917.1| YALI0E23628p [Yarrowia lipolytica CLIB122]
Length = 621
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 92/204 (45%), Gaps = 19/204 (9%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAV--VNVYINHEKKFAFVEM 229
R R VYV + P + FF++ AGP V V + + AFVE
Sbjct: 327 RDKRTVYVQQVAPHVQSTELFDFFAE---------AGPVHDVSLVKDRSSRCRGVAFVEF 377
Query: 230 RTVEEASNAMALDGIIFEGVAVRVR-----RPTDYNPTLAAALGPGQPSPNLNLAAVGLA 284
VE S A+ L G G A+ +R R + + A+ G S + +A V +
Sbjct: 378 EDVESVSRAIGLTGRSLHGQALLIRCTDSARNREEQQSEASFNSSGAGSTHA-VANVNAS 436
Query: 285 SGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQ 344
+ AI R++VG + + TE +I ++ E+FG + DL K++ TG SKGY F Y
Sbjct: 437 TSAIDSVRF-HRLYVGNIYFGVTEGEIIQIFEAFGPIEFADLQKEK-TGKSKGYCFIQYV 494
Query: 345 DPAVTDIACAALNGLKMGDKTLTV 368
+P A +NG ++ + L V
Sbjct: 495 NPDDAKTALEKMNGFELAGRKLRV 518
>gi|215820610|ref|NP_001135964.1| RNA binding motif protein 39 [Nasonia vitripennis]
Length = 516
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 85/204 (41%), Gaps = 28/204 (13%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF---AFVE 228
R AR ++ L + + FFS S G V + N ++F A+VE
Sbjct: 154 RDARTIFCMQLSQRIRARDLEEFFS---------SVGKVQDVRLITCNKTRRFKGIAYVE 204
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
+ E + A+ L G GV + V+ T A G PNL
Sbjct: 205 FKDPESVTLALGLSGQKLLGVPIVVQH------TQAEKNRMGNSMPNL----------MP 248
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
G GP R++VG L + TE +K + E FG + L+ D +TG SKGYGF +++
Sbjct: 249 KGQTGPMRLYVGSLLFNITEEMLKGIFEPFGKIENIQLIMDPETGRSKGYGFLTFRNADD 308
Query: 349 TDIACAALNGLKMGDKTLTVRRAT 372
A LNG ++ + + V T
Sbjct: 309 AKKALEQLNGFELAGRPMKVGNVT 332
>gi|195434196|ref|XP_002065089.1| GK15272 [Drosophila willistoni]
gi|194161174|gb|EDW76075.1| GK15272 [Drosophila willistoni]
Length = 612
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 81/204 (39%), Gaps = 28/204 (13%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF---AFVE 228
R AR V+ L + + FFS V G V + N K+F A++E
Sbjct: 252 RDARTVFCIQLSQRVRARDLEEFFSSV---------GKVRDVRMITCNKTKRFKGIAYIE 302
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
E S A+ L G GV + V+ L A QP +
Sbjct: 303 FEDPESVSLALGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHT------------ 350
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF Y +
Sbjct: 351 ----GPMRLYVGSLHFNITEDMLRGIFEPFGKIDVIQLIMDTETGRSKGYGFITYHNADD 406
Query: 349 TDIACAALNGLKMGDKTLTVRRAT 372
A LNG ++ + + V T
Sbjct: 407 AKKALEQLNGFELAGRPMKVGNVT 430
>gi|226469234|emb|CAX70096.1| RNA-binding protein 39 [Schistosoma japonicum]
Length = 327
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE R VE A A+ L G GV +++++ ++A P P P+
Sbjct: 9 KGIAYVEFREVESAQLALGLTGTRLLGVPIQIQQSHAEKNRVSAT--PSLPRPSQQ---- 62
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+GP ++++G L Y TE +K + E FG + L+KD T S+GYGF
Sbjct: 63 ---------NKGPMKLYIGSLHYNITEEMLKGIFEPFGKIEDIKLIKDPATNRSQGYGFV 113
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
Y + A LNG ++ + + V T S
Sbjct: 114 TYVNSDDAKKALDQLNGFELAGRPMKVNHVTERS 147
>gi|71017595|ref|XP_759028.1| hypothetical protein UM02881.1 [Ustilago maydis 521]
gi|46098750|gb|EAK83983.1| hypothetical protein UM02881.1 [Ustilago maydis 521]
Length = 403
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%)
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
G G VFVG +PY +E Q+ ++ G + GF LV DR+TG KGYGFC ++DP
Sbjct: 3 GAQRGSRVVFVGNIPYDMSEEQLTDVFREVGKVVGFRLVNDRETGKFKGYGFCEFEDPET 62
Query: 349 TDIACAALNGLKMGDKTLTVRRA 371
A LN +++G + L + A
Sbjct: 63 AASAVRNLNEVEVGGRPLRISFA 85
>gi|354474899|ref|XP_003499667.1| PREDICTED: cleavage stimulation factor subunit 2 [Cricetulus
griseus]
gi|344238061|gb|EGV94164.1| Cleavage stimulation factor 64 kDa subunit [Cricetulus griseus]
Length = 558
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
V VG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VCVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
>gi|73962355|ref|XP_848788.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Canis lupus
familiaris]
Length = 429
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 192 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 235
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 236 -MANNLQKGSSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 294
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 295 TFSDSECARRALEQLNGFELAGRPMRVGHVT 325
>gi|383419607|gb|AFH33017.1| putative RNA-binding protein 23 isoform 1 [Macaca mulatta]
Length = 441
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 207 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 250
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 251 -MANNLQKGSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 309
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 310 TFSDSECARRALEQLNGFELAGRPMRVGHVT 340
>gi|301781272|ref|XP_002926047.1| PREDICTED: probable RNA-binding protein 23-like isoform 3
[Ailuropoda melanoleuca]
Length = 412
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 68/151 (45%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 175 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 218
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 219 -MANNLQKGSSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 277
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V + T
Sbjct: 278 TFSDSECARRALEQLNGFELAGRPMRVGQVT 308
>gi|256082942|ref|XP_002577710.1| splicing factor [Schistosoma mansoni]
gi|360043601|emb|CCD81147.1| putative splicing factor [Schistosoma mansoni]
Length = 327
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 15/154 (9%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE R VE A A+ L G GV +++++ ++A P P P+
Sbjct: 9 KGIAYVEFREVESAQLALGLTGTRLLGVPIQIQQSHAEKNRVSAT--PSLPRPSQQ---- 62
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
GP ++++G L Y TE +K + E FG + L+KD T S+GYGF
Sbjct: 63 ---------NRGPMKLYIGSLHYNITEEMLKGIFEPFGKIEDIKLIKDPTTNRSQGYGFV 113
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
Y + A LNG ++ + + V T S
Sbjct: 114 TYVNSDDAKKALDQLNGFELAGRPMKVNHVTERS 147
>gi|355778434|gb|EHH63470.1| hypothetical protein EGM_16442, partial [Macaca fascicularis]
Length = 366
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 132 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 175
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 176 -MANNLQKGSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 234
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 235 TFSDSECARRALEQLNGFELAGRPMRVGHVT 265
>gi|388490330|ref|NP_001253303.1| probable RNA-binding protein 23 [Macaca mulatta]
gi|380814244|gb|AFE78996.1| putative RNA-binding protein 23 isoform 1 [Macaca mulatta]
gi|384947950|gb|AFI37580.1| putative RNA-binding protein 23 isoform 1 [Macaca mulatta]
Length = 441
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 207 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 250
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 251 -MANNLQKGSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 309
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 310 TFSDSECARRALEQLNGFELAGRPMRVGHVT 340
>gi|387539272|gb|AFJ70263.1| putative RNA-binding protein 23 isoform 1 [Macaca mulatta]
Length = 439
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 207 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 250
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 251 -MANNLQKGSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 309
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 310 TFSDSECARRALEQLNGFELAGRPMRVGHVT 340
>gi|355693134|gb|EHH27737.1| hypothetical protein EGK_18008 [Macaca mulatta]
Length = 441
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 207 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 250
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 251 -MANNLQKGSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 309
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 310 TFSDSECARRALEQLNGFELAGRPMRVGHVT 340
>gi|62122939|ref|NP_001014392.1| RNA binding motif protein 39b [Danio rerio]
gi|61402832|gb|AAH91794.1| RNA binding motif protein 39b [Danio rerio]
Length = 539
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A +AS G GP R++VG L + TE ++ + E FG + G L+ D +TG SKGYG
Sbjct: 249 AAAMASMLQRGGAGPMRLYVGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYG 308
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
F + D A LNG ++ + + V R+ ASS S + + +
Sbjct: 309 FISFADAECAKKALEQLNGFELAGRPMKVGHVTERSDASSASSFLDNDEL 358
>gi|332222976|ref|XP_003260645.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Nomascus
leucogenys]
Length = 442
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 207 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 250
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 251 -MANNLQKGSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 309
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 310 TFSDSECARRALEQLNGFELAGRPMRVGHVT 340
>gi|119586626|gb|EAW66222.1| RNA binding motif protein 23, isoform CRA_a [Homo sapiens]
Length = 483
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 251 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 294
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 295 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 353
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 354 TFSDSECARRALEQLNGFELAGRPMRVGHVT 384
>gi|384947948|gb|AFI37579.1| putative RNA-binding protein 23 isoform 2 [Macaca mulatta]
Length = 425
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 191 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 234
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 235 -MANNLQKGSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 293
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 294 TFSDSECARRALEQLNGFELAGRPMRVGHVT 324
>gi|328781105|ref|XP_624668.3| PREDICTED: RNA-binding protein 39-like [Apis mellifera]
Length = 506
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 92/228 (40%), Gaps = 31/228 (13%)
Query: 148 LPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSA 207
LPFG G PL R AR V+ L + + FFS S
Sbjct: 123 LPFGK---GVSPLGIRNDELTPEERDARTVFCMQLSQRIRARDLEEFFS---------SV 170
Query: 208 GPGDAVVNVYINHEKKF---AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLA 264
G V + N ++F A+VE + E + A+ L G GV + V+ T A
Sbjct: 171 GKVQDVRLITCNKTRRFKGIAYVEFKDPESVTLALGLSGQKLLGVPIVVQH------TQA 224
Query: 265 AALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324
G PNL G GP R++VG L + TE ++ + E FG +
Sbjct: 225 EKNRMGNSMPNL----------MPKGQTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNI 274
Query: 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
L+ D +TG SKGYGF +++ A LNG ++ + + V T
Sbjct: 275 QLIMDPETGRSKGYGFLTFRNADDAKKALEQLNGFELAGRPMKVGNVT 322
>gi|387539270|gb|AFJ70262.1| putative RNA-binding protein 23 isoform 2 [Macaca mulatta]
Length = 423
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 191 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 234
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 235 -MANNLQKGSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 293
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 294 TFSDSECARRALEQLNGFELAGRPMRVGHVT 324
>gi|145544238|ref|XP_001457804.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425622|emb|CAK90407.1| unnamed protein product [Paramecium tetraurelia]
Length = 435
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 15/161 (9%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIF-EGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
K + +E + E + D + F ++V RP + L L P L
Sbjct: 141 KSWVVLECSSKEAKRALVTQDQVQFVNNCKIKVERPRKF---LERILNPQAREGEL---- 193
Query: 281 VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD--RDTGNSKGY 338
A E R+++GGLP Y + + +L++SFGT F+LVKD +T SKGY
Sbjct: 194 -----SAEQKQEDNTRLYLGGLPTYLRDEDVMKLIQSFGTTKYFNLVKDTTSNTEISKGY 248
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSK 379
F Y++ T A ALN L++GDK L + + Q+K
Sbjct: 249 CFFEYENTGSTAKALKALNNLQIGDKKLKICKVQGEPQQNK 289
>gi|195471585|ref|XP_002088083.1| GE14328 [Drosophila yakuba]
gi|194174184|gb|EDW87795.1| GE14328 [Drosophila yakuba]
Length = 590
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 81/204 (39%), Gaps = 28/204 (13%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF---AFVE 228
R AR V+ L + + FFS V G V + N K+F A++E
Sbjct: 230 RDARTVFCIQLSQRVRARDLEEFFSSV---------GKVRDVRLITCNKTKRFKGIAYIE 280
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
E + A+ L G GV + V+ L A QP +
Sbjct: 281 FEDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHT------------ 328
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF Y +
Sbjct: 329 ----GPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADD 384
Query: 349 TDIACAALNGLKMGDKTLTVRRAT 372
A LNG ++ + + V T
Sbjct: 385 AKKALEQLNGFELAGRLMKVGNVT 408
>gi|149756178|ref|XP_001494868.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Equus
caballus]
Length = 446
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 210 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 253
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 254 -MANNLQKGSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 312
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 313 TFSDSECARRALEQLNGFELAGRPMRVGHVT 343
>gi|380814242|gb|AFE78995.1| putative RNA-binding protein 23 isoform 2 [Macaca mulatta]
gi|383419605|gb|AFH33016.1| putative RNA-binding protein 23 isoform 2 [Macaca mulatta]
Length = 425
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 191 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 234
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 235 -MANNLQKGSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 293
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 294 TFSDSECARRALEQLNGFELAGRPMRVGHVT 324
>gi|401410983|ref|XP_003884939.1| putative U2 small nuclear ribonucleoprotein auxiliary factor U2AF
[Neospora caninum Liverpool]
gi|325119358|emb|CBZ54911.1| putative U2 small nuclear ribonucleoprotein auxiliary factor U2AF
[Neospora caninum Liverpool]
Length = 588
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEE 234
R +YVG LPP + F + M A+GG + PG V + + + +AFVE RT+EE
Sbjct: 117 RELYVGNLPPSLEVPQLMEFLNAAMAAVGG-ALLPGPPAVKAWRSTDGHYAFVEFRTMEE 175
Query: 235 ASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGA 291
ASN M L+G+ G +R+ RP Y + + P P+ L + +G +GGA
Sbjct: 176 ASNGMQLNGLNCMGFNLRIGRPKTYPQDMNHLIPP--PTIPLLHPQAAMGAGIVGGA 230
>gi|145542929|ref|XP_001457151.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124424966|emb|CAK89754.1| unnamed protein product [Paramecium tetraurelia]
Length = 429
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 15/161 (9%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIF-EGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
K + +E + E + D + F ++V RP + L L P LN
Sbjct: 135 KSWVVLECSSKEAKRALVTQDQVQFVNNCKIKVERPRKF---LERILNPQTKDGELN--- 188
Query: 281 VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD--RDTGNSKGY 338
E R+++GGLP Y + + +L++SFG F+LVKD +T SKGY
Sbjct: 189 ------PDQKQEDNTRLYLGGLPTYLRDEDVMKLIQSFGITKYFNLVKDTTSNTEISKGY 242
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSK 379
F Y++ T A ALN L++GDK L + + + Q+K
Sbjct: 243 CFFEYENAQSTAKALKALNNLQIGDKKLKICKVQGETQQNK 283
>gi|194862772|ref|XP_001970115.1| GG10454 [Drosophila erecta]
gi|190661982|gb|EDV59174.1| GG10454 [Drosophila erecta]
Length = 593
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 81/204 (39%), Gaps = 28/204 (13%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF---AFVE 228
R AR V+ L + + FFS S G V + N K+F A++E
Sbjct: 233 RDARTVFCIQLSQRVRARDLEEFFS---------SVGKVRDVRLITCNKTKRFKGIAYIE 283
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
E + A+ L G GV + V+ L A QP +
Sbjct: 284 FEDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHT------------ 331
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF Y +
Sbjct: 332 ----GPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADD 387
Query: 349 TDIACAALNGLKMGDKTLTVRRAT 372
A LNG ++ + + V T
Sbjct: 388 AKKALEQLNGFELAGRLMKVGNVT 411
>gi|116734696|ref|NP_001070819.1| probable RNA-binding protein 23 isoform 1 [Homo sapiens]
gi|34925229|sp|Q86U06.1|RBM23_HUMAN RecName: Full=Probable RNA-binding protein 23; AltName:
Full=RNA-binding motif protein 23; AltName:
Full=RNA-binding region-containing protein 4; AltName:
Full=Splicing factor SF2
gi|28071058|emb|CAD61910.1| unnamed protein product [Homo sapiens]
gi|119586629|gb|EAW66225.1| RNA binding motif protein 23, isoform CRA_d [Homo sapiens]
Length = 439
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 207 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 250
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 251 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 309
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 310 TFSDSECARRALEQLNGFELAGRPMRVGHVT 340
>gi|410961880|ref|XP_003987506.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Felis catus]
Length = 445
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 208 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 251
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 252 -MANNLQKGSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 310
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 311 TFSDSECARRALEQLNGFELAGRPMRVGHVT 341
>gi|281354415|gb|EFB29999.1| hypothetical protein PANDA_019778 [Ailuropoda melanoleuca]
Length = 568
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 298 FVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN 357
VG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A LN
Sbjct: 5 IVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLN 64
Query: 358 GLKMGDKTLTVRRATASSGQSKTEQESI 385
G + + L V A+S ++K E +S+
Sbjct: 65 GREFSGRALRVD--NAASEKNKEELKSL 90
>gi|443921112|gb|ELU40879.1| splicing factor, CC1-like family protein [Rhizoctonia solani AG-1
IA]
Length = 399
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 105/264 (39%), Gaps = 36/264 (13%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
PV AR V+V L + + FF +G + V +
Sbjct: 52 PVIEEINDEDSEARSVFVSQLAARLTARDLGYFFED---KLGEGAVRDARIVTDRLSRRS 108
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVR----RPTDYNPTLAAALGPGQPSPNLN 277
K +VE + ++ + A+AL G I G+ + ++ P+ + L PG P+
Sbjct: 109 KGIGYVEFKNIDLVNKAIALSGTIVMGLPIMIQLTESERNKIGPSSSLHLPPGVSHPH-- 166
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
G +++VG L + TE+ I+++ E FG L DL +D TG SKG
Sbjct: 167 --------------AGSMQLYVGSLHFNLTESDIRQVFEPFGELDFVDLHRDPATGKSKG 212
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTL-----------TVRRATASSGQSKTEQESIL 386
Y F Y+ P +A + G ++ + L TVR +TA + +
Sbjct: 213 YCFIQYKRPEDARMALEQMEGFELAGRQLRVNTVHDKGQGTVRISTAPQDSLEDTGGVLN 272
Query: 387 AQAQQHIAIQKMAL--QTSGMNTL 408
+H +QK+A Q S NT+
Sbjct: 273 NSTSRHQLMQKLARTEQPSKNNTM 296
>gi|345804022|ref|XP_003435135.1| PREDICTED: probable RNA-binding protein 23 [Canis lupus familiaris]
Length = 411
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 174 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 217
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 218 -MANNLQKGSSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 276
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 277 TFSDSECARRALEQLNGFELAGRPMRVGHVT 307
>gi|256085765|ref|XP_002579083.1| rna recognition motif containing protein [Schistosoma mansoni]
gi|360043212|emb|CCD78624.1| putative rna recognition motif containing protein [Schistosoma
mansoni]
Length = 412
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+FVG +PY TE ++ EL G + GF LV DR++G KGYGFC Y +PA+ A L
Sbjct: 18 IFVGNIPYEATEEKLIELFSKAGPVIGFRLVYDRESGKPKGYGFCEYNNPAIAASALRNL 77
Query: 357 NGLKMGDKTLTV 368
++ + L +
Sbjct: 78 QNIEFNGRPLRI 89
>gi|255088499|ref|XP_002506172.1| predicted protein [Micromonas sp. RCC299]
gi|226521443|gb|ACO67430.1| predicted protein [Micromonas sp. RCC299]
Length = 628
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 113/264 (42%), Gaps = 24/264 (9%)
Query: 139 AVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQV 198
AV E A+ A + A L+ +V + T+ ARRV++G + + A
Sbjct: 213 AVREEAKGKRGMNAAMVDAL-LLHNKVRWRDDTKPARRVHIGNVNAGVKAEEFARVLETR 271
Query: 199 MTAIGGNSA----------------GPGDAVV-NVYINHEKKFAFVEMRTVEEASNAMAL 241
+ + + PG V+ ++Y+N +K F F+E +E+ +AL
Sbjct: 272 IRTLSPEAVPWHYPLDKRGRVDERRAPGTRVIEHLYLN-DKGFGFLETTALEDVPAILAL 330
Query: 242 DGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGG 301
+G+ G R RRP DY+P + G + S + + P +VFVGG
Sbjct: 331 NGVRVNGGVTRFRRPKDYDPDNNPLVRDGSYRDVFQRVFTAVLSDEV--VDSPTKVFVGG 388
Query: 302 L-PYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQD-PAVTDIACAALNGL 359
+ P T+ + E++ SFG L F D G +G+ + Y + +V A A L+G
Sbjct: 389 VEPRALTKLDLLEIVSSFGALTAFRCETD-GAGLCRGFAWMEYAEGESVAAKAVAGLSGY 447
Query: 360 KMGDKTLTVRRATASSGQSKTEQE 383
++ K + AT + ++T E
Sbjct: 448 QLRGKPIAAALATPRAEAARTRGE 471
>gi|195338839|ref|XP_002036031.1| GM16278 [Drosophila sechellia]
gi|194129911|gb|EDW51954.1| GM16278 [Drosophila sechellia]
Length = 596
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 88/220 (40%), Gaps = 30/220 (13%)
Query: 156 GAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVN 215
GA P ++ ++ R AR V+ L + + FFS V G V
Sbjct: 222 GAERTTPTELSPEE--RDARTVFCIQLSQRVRARDLEEFFSSV---------GKVRDVRL 270
Query: 216 VYINHEKKF---AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP 272
+ N K+F A++E E + A+ L G GV + V+ L A QP
Sbjct: 271 ITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQNATPAFQP 330
Query: 273 SPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
+ GP R++VG L + TE ++ + E FG + L+ D +T
Sbjct: 331 KSHT----------------GPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTET 374
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
G SKGYGF Y + A LNG ++ + + V T
Sbjct: 375 GRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVGNVT 414
>gi|444728803|gb|ELW69245.1| putative RNA-binding protein 23 [Tupaia chinensis]
Length = 450
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 195 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 238
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 239 -MANNLQKGSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 297
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 298 TFSDSECARRALEQLNGFELAGRPMRVGHVT 328
>gi|350410158|ref|XP_003488966.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Bombus impatiens]
Length = 532
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 92/228 (40%), Gaps = 31/228 (13%)
Query: 148 LPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSA 207
LPFG G PL R AR V+ L + + FFS S
Sbjct: 149 LPFGK---GVSPLGIRNDELTPEERDARTVFCMQLSQRIRARDLEEFFS---------SV 196
Query: 208 GPGDAVVNVYINHEKKF---AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLA 264
G V + N ++F A+VE + E + A+ L G GV + V+ T A
Sbjct: 197 GKVQDVRLITCNKTRRFKGIAYVEFKDPESVTLALGLSGQKLLGVPIVVQH------TQA 250
Query: 265 AALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324
G PNL G GP R++VG L + TE ++ + E FG +
Sbjct: 251 EKNRMGNSMPNL----------MPKGQTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNI 300
Query: 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
L+ D +TG SKGYGF +++ A LNG ++ + + V T
Sbjct: 301 QLIMDPETGRSKGYGFLTFRNADDAKKALEQLNGFELAGRPMKVGNVT 348
>gi|215820612|ref|NP_001135965.1| RNA binding motif protein 39 [Acyrthosiphon pisum]
Length = 501
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 87/215 (40%), Gaps = 28/215 (13%)
Query: 161 MPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH 220
+P M R AR V+ L + + FFS V G V + N
Sbjct: 126 VPPASMLTPEERDARTVFCMQLSKTIRARDLEEFFSSV---------GKVRDVRMITCNK 176
Query: 221 EKKF---AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLN 277
++F A++E + E AM L+G GV + V+ PT A PN+
Sbjct: 177 TRRFKGIAYIEFKDPESVPLAMGLNGQKLLGVPIVVQ------PTQAEKNRMANSMPNM- 229
Query: 278 LAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKG 337
GP +++VG L Y TE ++ + E FG + L+ D +TG SKG
Sbjct: 230 ---------VQRTHYGPMKLYVGSLHYNITEEMLRGIFEPFGHVDNIQLMMDTETGRSKG 280
Query: 338 YGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
YGF Y++ A LNG ++ + + V T
Sbjct: 281 YGFLTYRNAEDAKKALEHLNGFEIAGRPMKVGHVT 315
>gi|410218752|gb|JAA06595.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410307724|gb|JAA32462.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410307728|gb|JAA32464.1| RNA binding motif protein 23 [Pan troglodytes]
Length = 442
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 207 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 250
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG+SKGYGF
Sbjct: 251 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFI 309
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 310 TFSDSECARRALEQLNGFELAGRPMRVGHVT 340
>gi|119586634|gb|EAW66230.1| RNA binding motif protein 23, isoform CRA_h [Homo sapiens]
Length = 467
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 235 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 278
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 279 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 337
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 338 TFSDSECARRALEQLNGFELAGRPMRVGHVT 368
>gi|114652057|ref|XP_001159475.1| PREDICTED: probable RNA-binding protein 23 isoform 10 [Pan
troglodytes]
Length = 442
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 207 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 250
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG+SKGYGF
Sbjct: 251 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFI 309
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 310 TFSDSECARRALEQLNGFELAGRPMRVGHVT 340
>gi|226466604|emb|CAX69437.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa
[Schistosoma japonicum]
Length = 414
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+FVG +PY TE ++ EL G + GF LV DR++G KGYGFC Y +PA+ A L
Sbjct: 18 IFVGNIPYEATEEKLIELFSKAGPVIGFRLVYDRESGKPKGYGFCEYNNPAIAASALRNL 77
Query: 357 NGLKMGDKTLTVRRA 371
++ + L + A
Sbjct: 78 QNIEFNGRPLRIGPA 92
>gi|332222974|ref|XP_003260644.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Nomascus
leucogenys]
Length = 426
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 191 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 234
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 235 -MANNLQKGSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 293
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 294 TFSDSECARRALEQLNGFELAGRPMRVGHVT 324
>gi|391336770|ref|XP_003742751.1| PREDICTED: RNA-binding protein 39-like [Metaseiulus occidentalis]
Length = 520
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 71/160 (44%), Gaps = 21/160 (13%)
Query: 213 VVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP 272
+V+ K A+VE +E AM L+G GV + V+ P Q
Sbjct: 207 IVDNKTRKSKGIAYVEFFDLESVPLAMGLNGQKLFGVPIIVQ--------------PTQA 252
Query: 273 SPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N A+ +GP R++VG L + +E +KE+ E FG L +L+K+ DT
Sbjct: 253 ERNRQ------ANQTAASTKGPMRLYVGSLHFDISEQMLKEIFEPFGRLDRVELIKE-DT 305
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
G SKGYGF + + A LNG ++ + + V T
Sbjct: 306 GKSKGYGFVTFHEADAAKKAMEQLNGFELAGRPMKVGNVT 345
>gi|221129809|ref|XP_002164481.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Hydra
magnipapillata]
Length = 255
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+F+GGLPY TE + + +G + +LV+D+ TG KGYGF Y+D T +A
Sbjct: 39 IFIGGLPYDLTEGDVLAVFSQYGEIVNINLVRDKKTGKFKGYGFLCYEDQRSTILAVDNF 98
Query: 357 NGLKMGDKTLTV 368
NG+K+G +T+ V
Sbjct: 99 NGIKLGGRTIRV 110
>gi|149756180|ref|XP_001494897.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Equus
caballus]
Length = 430
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 194 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 237
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 238 -MANNLQKGSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 296
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 297 TFSDSECARRALEQLNGFELAGRPMRVGHVT 327
>gi|12803481|gb|AAH02566.1| RNA binding motif protein 23 [Homo sapiens]
gi|189055004|dbj|BAG37988.1| unnamed protein product [Homo sapiens]
gi|312151810|gb|ADQ32417.1| RNA binding motif protein 23 [synthetic construct]
Length = 424
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 191 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 234
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 235 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 293
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 294 TFSDSECARRALEQLNGFELAGRPMRVGHVT 324
>gi|189237575|ref|XP_974855.2| PREDICTED: similar to splicing factor [Tribolium castaneum]
Length = 501
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 97/230 (42%), Gaps = 32/230 (13%)
Query: 149 PFGA---TQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGN 205
PFG + LG PV+ ++ + R AR V+V L + + FFS
Sbjct: 115 PFGRRNRSPLGLRSNSPVEELSPE-ERDARTVFVMQLSQRIRARDLEEFFS--------- 164
Query: 206 SAGPGDAVVNVYINHEKKF---AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPT 262
S G V + N ++F A++E + E + A+ L G GV + V+ T
Sbjct: 165 SVGKVRDVRLIVCNKTRRFKGIAYIEFKDPESVTLALGLSGQKLLGVPIIVQH------T 218
Query: 263 LAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 322
A G PNL GP R++VG L + TE ++ + E FG +
Sbjct: 219 QAEKNRMGNSMPNL----------MPKNMTGPMRLYVGSLHFNITEDMLRSIFEPFGKID 268
Query: 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
L+ D +TG SKGYGF +++ A LNG ++ + + V T
Sbjct: 269 NIQLIMDPETGRSKGYGFIAFRNCEDAKKALEQLNGFELAGRPMKVGNVT 318
>gi|410261842|gb|JAA18887.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410349771|gb|JAA41489.1| RNA binding motif protein 23 [Pan troglodytes]
Length = 442
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 207 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 250
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG+SKGYGF
Sbjct: 251 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFI 309
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 310 TFSDSECARRALEQLNGFELAGRPMRVGHVT 340
>gi|296214508|ref|XP_002753659.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Callithrix
jacchus]
Length = 439
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 206 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 249
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 250 -MANNLQKGTGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 308
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 309 TFSDSECARRAMDQLNGFELAGRPMRVGHVT 339
>gi|116734694|ref|NP_060577.3| probable RNA-binding protein 23 isoform 2 [Homo sapiens]
gi|18848317|gb|AAH24208.1| RNA binding motif protein 23 [Homo sapiens]
gi|119586627|gb|EAW66223.1| RNA binding motif protein 23, isoform CRA_b [Homo sapiens]
gi|119586633|gb|EAW66229.1| RNA binding motif protein 23, isoform CRA_b [Homo sapiens]
Length = 423
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 191 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 234
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 235 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 293
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 294 TFSDSECARRALEQLNGFELAGRPMRVGHVT 324
>gi|397473313|ref|XP_003808159.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Pan paniscus]
Length = 442
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 207 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 250
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 251 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 309
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 310 TFSDSECARRALEQLNGFELAGRPMRVGHVT 340
>gi|119586630|gb|EAW66226.1| RNA binding motif protein 23, isoform CRA_e [Homo sapiens]
Length = 449
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 217 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 260
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 261 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 319
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 320 TFSDSECARRALEQLNGFELAGRPMRVGHVT 350
>gi|410961882|ref|XP_003987507.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Felis catus]
Length = 429
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 192 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 235
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 236 -MANNLQKGSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 294
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 295 TFSDSECARRALEQLNGFELAGRPMRVGHVT 325
>gi|195577213|ref|XP_002078467.1| GD23448 [Drosophila simulans]
gi|194190476|gb|EDX04052.1| GD23448 [Drosophila simulans]
Length = 608
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 81/204 (39%), Gaps = 28/204 (13%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF---AFVE 228
R AR V+ L + + FFS S G V + N K+F A++E
Sbjct: 248 RDARTVFCIQLSQRVRARDLEEFFS---------SVGKVRDVRLITCNKTKRFKGIAYIE 298
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
E + A+ L G GV + V+ L A QP +
Sbjct: 299 FDDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQNATPAFQPKSH------------- 345
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF Y +
Sbjct: 346 ---TGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADD 402
Query: 349 TDIACAALNGLKMGDKTLTVRRAT 372
A LNG ++ + + V T
Sbjct: 403 AKKALEQLNGFELAGRLMKVGNVT 426
>gi|326431687|gb|EGD77257.1| hypothetical protein PTSG_08350 [Salpingoeca sp. ATCC 50818]
Length = 397
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%)
Query: 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIA 352
P V+VG +PY TE ++ + + G + F L+ D++TG SKG+GFC + D A + A
Sbjct: 3 APTSVWVGNIPYEATEEELIKFFSAVGDVKNFHLITDQNTGRSKGFGFCYFLDAAAAESA 62
Query: 353 CAALNGLKMGDKTLTVRRATASS 375
L+G + D+ L V AT S
Sbjct: 63 VRNLSGQPLRDRPLRVDLATPRS 85
>gi|255085602|ref|XP_002505232.1| predicted protein [Micromonas sp. RCC299]
gi|226520501|gb|ACO66490.1| predicted protein [Micromonas sp. RCC299]
Length = 211
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 33/205 (16%)
Query: 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK-----FAFVE 228
A ++YVG LP N + + F + ++V + E++ FAFV
Sbjct: 32 AAKLYVGHLPSTMNAERMLEMFKPFGRVLQ----------IDVIPDRERQLSCKGFAFVL 81
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
T EEA A AL+G + EG ++ VR + P P +N + A
Sbjct: 82 FSTPEEAIAAKALNGHVVEGKSIDVRLKAE----------PRAPREPVNAPVAPVNDDA- 130
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
+++V +P ++ ++K LL+ +G ++ DR+TG S+G+GF D
Sbjct: 131 -------KLYVAYMPDHYRAEELKMLLQPYGLPSDVRVITDRETGRSRGFGFAQMMDEQQ 183
Query: 349 TDIACAALNGLKMGDKTLTVRRATA 373
A LNG + KTL VR A A
Sbjct: 184 AMAAIQGLNGQMLDGKTLVVRIAGA 208
>gi|198418855|ref|XP_002123179.1| PREDICTED: similar to cleavage stimulation factor, 3 pre-RNA,
subunit 2, 64kDa [Ciona intestinalis]
Length = 455
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR++G KGYGF YQD + L
Sbjct: 18 VFVGNIPYEATEEQLKDIFNEVGNVISFRLVFDRESGKPKGYGFAEYQDKETALSSMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQS 378
NG ++ + L V AT+ ++
Sbjct: 78 NGRELHGRPLRVDHATSERNRN 99
>gi|350410161|ref|XP_003488967.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Bombus impatiens]
Length = 508
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 92/228 (40%), Gaps = 31/228 (13%)
Query: 148 LPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSA 207
LPFG G PL R AR V+ L + + FFS S
Sbjct: 125 LPFGK---GVSPLGIRNDELTPEERDARTVFCMQLSQRIRARDLEEFFS---------SV 172
Query: 208 GPGDAVVNVYINHEKKF---AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLA 264
G V + N ++F A+VE + E + A+ L G GV + V+ T A
Sbjct: 173 GKVQDVRLITCNKTRRFKGIAYVEFKDPESVTLALGLSGQKLLGVPIVVQH------TQA 226
Query: 265 AALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324
G PNL G GP R++VG L + TE ++ + E FG +
Sbjct: 227 EKNRMGNSMPNL----------MPKGQTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNI 276
Query: 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
L+ D +TG SKGYGF +++ A LNG ++ + + V T
Sbjct: 277 QLIMDPETGRSKGYGFLTFRNADDAKKALEQLNGFELAGRPMKVGNVT 324
>gi|340718900|ref|XP_003397900.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Bombus
terrestris]
Length = 508
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 92/228 (40%), Gaps = 31/228 (13%)
Query: 148 LPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSA 207
LPFG G PL R AR V+ L + + FFS S
Sbjct: 125 LPFGK---GVSPLGIRNDELTPEERDARTVFCMQLSQRIRARDLEEFFS---------SV 172
Query: 208 GPGDAVVNVYINHEKKF---AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLA 264
G V + N ++F A+VE + E + A+ L G GV + V+ T A
Sbjct: 173 GKVQDVRLITCNKTRRFKGIAYVEFKDPESVTLALGLSGQKLLGVPIVVQH------TQA 226
Query: 265 AALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324
G PNL G GP R++VG L + TE ++ + E FG +
Sbjct: 227 EKNRMGNSMPNL----------MPKGQTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNI 276
Query: 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
L+ D +TG SKGYGF +++ A LNG ++ + + V T
Sbjct: 277 QLIMDPETGRSKGYGFLTFRNADDAKKALEQLNGFELAGRPMKVGNVT 324
>gi|397473311|ref|XP_003808158.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Pan paniscus]
Length = 426
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 191 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 234
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 235 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 293
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 294 TFSDSECARRALEQLNGFELAGRPMRVGHVT 324
>gi|10880789|gb|AAG24388.1|AF275678_1 PP239 protein [Homo sapiens]
Length = 418
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 185 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 228
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 229 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 287
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 288 TFSDSECARRALEQLNGFELAGRPMRVGHVT 318
>gi|116734698|ref|NP_001070820.1| probable RNA-binding protein 23 isoform 3 [Homo sapiens]
gi|119586628|gb|EAW66224.1| RNA binding motif protein 23, isoform CRA_c [Homo sapiens]
Length = 405
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 173 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 216
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 217 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 275
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 276 TFSDSECARRALEQLNGFELAGRPMRVGHVT 306
>gi|390342940|ref|XP_001198098.2| PREDICTED: RNA-binding protein 39-like [Strongylocentrotus
purpuratus]
Length = 666
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 89/220 (40%), Gaps = 23/220 (10%)
Query: 160 LMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN 219
+ PV+ TR AR V+V L A E+ + FFS V + +
Sbjct: 193 ISPVRDDPDADTRDARTVFVMQLSQRAKERELKEFFSSV------GKVRTVKIITDRNSR 246
Query: 220 HEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLA 279
K +VE + A+ L+ GV + V+ P+ +A GQ N+ L
Sbjct: 247 RSKGVGYVEYDVADSVPLALGLNNQKLLGVPIIVQ-PSHAEKNRSA----GQ---NVTLQ 298
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
V GP R++VG L Y TE ++ + E FG + L+ D D SKGYG
Sbjct: 299 KVN---------SGPMRLYVGSLHYNITEAMLRGIFEPFGKIDNIQLMMDTDANRSKGYG 349
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSK 379
F + D A LNG ++ + + V T + Q +
Sbjct: 350 FITFHDAEDAKRALDQLNGFELAGRPMKVNHVTERNEQGQ 389
>gi|261858408|dbj|BAI45726.1| RNA binding motif protein 23 [synthetic construct]
Length = 406
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 173 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 216
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 217 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 275
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 276 TFSDSECARRALEQLNGFELAGRPMRVGHVT 306
>gi|114652069|ref|XP_001159523.1| PREDICTED: probable RNA-binding protein 23 isoform 11 [Pan
troglodytes]
Length = 426
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 191 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 234
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG+SKGYGF
Sbjct: 235 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFI 293
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 294 TFSDSECARRALEQLNGFELAGRPMRVGHVT 324
>gi|340718898|ref|XP_003397899.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Bombus
terrestris]
Length = 520
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 92/228 (40%), Gaps = 31/228 (13%)
Query: 148 LPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSA 207
LPFG G PL R AR V+ L + + FFS S
Sbjct: 137 LPFGK---GVSPLGIRNDELTPEERDARTVFCMQLSQRIRARDLEEFFS---------SV 184
Query: 208 GPGDAVVNVYINHEKKF---AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLA 264
G V + N ++F A+VE + E + A+ L G GV + V+ T A
Sbjct: 185 GKVQDVRLITCNKTRRFKGIAYVEFKDPESVTLALGLSGQKLLGVPIVVQH------TQA 238
Query: 265 AALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324
G PNL G GP R++VG L + TE ++ + E FG +
Sbjct: 239 EKNRMGNSMPNL----------MPKGQTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNI 288
Query: 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
L+ D +TG SKGYGF +++ A LNG ++ + + V T
Sbjct: 289 QLIMDPETGRSKGYGFLTFRNADDAKKALEQLNGFELAGRPMKVGNVT 336
>gi|335310533|ref|XP_003362077.1| PREDICTED: probable RNA-binding protein 23 [Sus scrofa]
Length = 443
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 209 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 252
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 253 -MANNLQKGTGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 311
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + + T
Sbjct: 312 TFSDSECARRALEQLNGFELAGRPMRIGHVT 342
>gi|440797518|gb|ELR18604.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 696
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 100/252 (39%), Gaps = 60/252 (23%)
Query: 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV---NVYINHEKKFAFVEMR 230
A R+YVG L +E+ I T FS GP +V + K FAFVE
Sbjct: 250 ACRIYVGSLNFELSEEDIKTAFSPF---------GPVKSVSLTKDPLTQRSKGFAFVEYA 300
Query: 231 TVEEASNAMA-LDGIIFEGVAVRVRRP------------------------TDYNPTLAA 265
+ A+ A+ ++G + G ++V RP NP+L
Sbjct: 301 YPDAATAALKHMNGFMLAGRQLKVGRPHTPGAGLPGMPGMPGVMMPGLSPFPQLNPSLPV 360
Query: 266 ALGPG----------------------QPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLP 303
+ P QP+P + L A +R++VG +
Sbjct: 361 -MNPSILLQANAAIEAQKAAAAAANGSQPTPEMMQEFTKLTGKTAADATASNRIYVGSIH 419
Query: 304 YYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 363
+ T IK + E+FGT+ L+ + +TG KGYGF Y++ + A +NG +G
Sbjct: 420 WDLTSDDIKTVFEAFGTVKSCVLMPNPETGKHKGYGFVEYEESKSAEEAIQQMNGWDLGG 479
Query: 364 KTLTVRRATASS 375
+ + V RA +S+
Sbjct: 480 RPIKVGRAISSA 491
>gi|426376372|ref|XP_004054975.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Gorilla
gorilla gorilla]
Length = 437
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 207 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 250
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 251 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 309
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 310 TFSDSECARRALEQLNGFELAGRPMRVGHVT 340
>gi|351697087|gb|EHB00006.1| Putative RNA-binding protein 23 [Heterocephalus glaber]
Length = 436
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 85/203 (41%), Gaps = 35/203 (17%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFA 225
R AR V+ L + + FFS AIG V +V I K A
Sbjct: 163 RDARTVFCMQLAARIRPRDLEDFFS----AIG--------KVHDVRIISDRNSRRSKGIA 210
Query: 226 FVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLAS 285
+VE ++ A+ L G GV + V+ LAA +A+
Sbjct: 211 YVEFCDIQSVPLAIGLTGQRLLGVPIVVQASQAEKNRLAA-----------------MAN 253
Query: 286 GAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQD 345
G+ GP R++VG L + TE ++ + E FG + L+KD +TG+SKGYGF + +
Sbjct: 254 NLQKGSGGPKRLYVGCLHFNITEDMLRGIFEPFGKIENIVLMKDSETGHSKGYGFITFSE 313
Query: 346 PAVTDIACAALNGLKMGDKTLTV 368
A LNG ++ + + V
Sbjct: 314 SECARRAVEQLNGFELAGRPMRV 336
>gi|410218750|gb|JAA06594.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410307726|gb|JAA32463.1| RNA binding motif protein 23 [Pan troglodytes]
Length = 426
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 191 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 234
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG+SKGYGF
Sbjct: 235 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFI 293
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 294 TFSDSECARRALEQLNGFELAGRPMRVGHVT 324
>gi|7022544|dbj|BAA91638.1| unnamed protein product [Homo sapiens]
Length = 406
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 173 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 216
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 217 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 275
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 276 TFSDSECARRALEQLNGFELAGRPMRVGHVT 306
>gi|196005405|ref|XP_002112569.1| hypothetical protein TRIADDRAFT_56724 [Trichoplax adhaerens]
gi|190584610|gb|EDV24679.1| hypothetical protein TRIADDRAFT_56724 [Trichoplax adhaerens]
Length = 316
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 50/91 (54%)
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
+AS I VFVG +PY TE Q+K++ S G + F LV DR++G KGYGFC
Sbjct: 1 MASATISRERSLRSVFVGNIPYEATEEQLKDIFGSAGPVVSFRLVYDRESGKPKGYGFCE 60
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
+QD A L+G ++ ++L V A +
Sbjct: 61 FQDKETALSAMRNLSGYELNGRSLRVDSAAS 91
>gi|19920866|ref|NP_609095.1| CG11266, isoform B [Drosophila melanogaster]
gi|24582412|ref|NP_723243.1| CG11266, isoform A [Drosophila melanogaster]
gi|7297213|gb|AAF52478.1| CG11266, isoform A [Drosophila melanogaster]
gi|15292031|gb|AAK93284.1| LD35730p [Drosophila melanogaster]
gi|22945834|gb|AAN10614.1| CG11266, isoform B [Drosophila melanogaster]
gi|220946034|gb|ACL85560.1| CG11266-PA [synthetic construct]
gi|220955788|gb|ACL90437.1| CG11266-PA [synthetic construct]
Length = 594
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 81/204 (39%), Gaps = 28/204 (13%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF---AFVE 228
R AR V+ L + + FFS S G V + N K+F A++E
Sbjct: 234 RDARTVFCIQLSQRVRARDLEEFFS---------SVGKVRDVRLITCNKTKRFKGIAYIE 284
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
E + A+ L G GV + V+ L A QP +
Sbjct: 285 FDDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHT------------ 332
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF Y +
Sbjct: 333 ----GPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADD 388
Query: 349 TDIACAALNGLKMGDKTLTVRRAT 372
A LNG ++ + + V T
Sbjct: 389 AKKALEQLNGFELAGRLMKVGNVT 412
>gi|395547925|ref|XP_003775192.1| PREDICTED: cleavage stimulation factor subunit 2 [Sarcophilus
harrisii]
Length = 556
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 299 VGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG 358
VG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A LNG
Sbjct: 5 VGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG 64
Query: 359 LKMGDKTLTVRRATASSGQSKTEQESI 385
+ + L V A+S ++K E +S+
Sbjct: 65 REFSGRALRVD--NAASEKNKEELKSL 89
>gi|91085985|ref|XP_972080.1| PREDICTED: similar to CG10466 CG10466-PA [Tribolium castaneum]
gi|270010180|gb|EFA06628.1| hypothetical protein TcasGA2_TC009547 [Tribolium castaneum]
Length = 266
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VF+GGLP+ TE I + +G + +L++D+D+G SKG+ F Y+D TD+A
Sbjct: 36 VFIGGLPFDLTEGDIICIFSQYGEVVNINLIRDKDSGKSKGFCFLCYEDQRSTDLAVDNF 95
Query: 357 NGLKMGDKTLTV 368
NG+K+ ++T+ V
Sbjct: 96 NGIKILNRTIRV 107
>gi|410261840|gb|JAA18886.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410349769|gb|JAA41488.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410349773|gb|JAA41490.1| RNA binding motif protein 23 [Pan troglodytes]
Length = 426
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 191 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 234
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG+SKGYGF
Sbjct: 235 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFI 293
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 294 TFSDSECARRALEQLNGFELAGRPMRVGHVT 324
>gi|198476543|ref|XP_001357388.2| GA10876 [Drosophila pseudoobscura pseudoobscura]
gi|198137744|gb|EAL34457.2| GA10876 [Drosophila pseudoobscura pseudoobscura]
Length = 625
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 81/204 (39%), Gaps = 28/204 (13%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF---AFVE 228
R AR V+ L + + FFS S G V + N K+F A++E
Sbjct: 264 RDARTVFCIQLSQRVRARDLEEFFS---------SVGKVRDVRLITCNKTKRFKGIAYIE 314
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
E + A+ L G GV + V+ L A QP ++
Sbjct: 315 FEDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQNATPAFQPKSHV------------ 362
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GP R++VG L + TE ++ + E FG + L+ D +T SKGYGF Y +
Sbjct: 363 ----GPMRLYVGSLHFDITEEMLRGIFEPFGKIDAIQLIMDTETNRSKGYGFITYHNAED 418
Query: 349 TDIACAALNGLKMGDKTLTVRRAT 372
A LNG ++ + + V T
Sbjct: 419 AKKALEQLNGFELAGRPMKVGNVT 442
>gi|294882869|ref|XP_002769861.1| splicing factor, putative [Perkinsus marinus ATCC 50983]
gi|239873674|gb|EER02579.1| splicing factor, putative [Perkinsus marinus ATCC 50983]
Length = 364
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 86/208 (41%), Gaps = 28/208 (13%)
Query: 166 MTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV--NVYINHEKK 223
M QQA R V V G+ P E+ + F SQ N+ D V + N K
Sbjct: 146 MVQQAHRDDCTVMVMGIHPKCTEKEVYVFMSQ-------NAGKVRDVQVIRDPRTNRSKG 198
Query: 224 FAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGL 283
A+VE T + A+A +G G +R++ Q N A +
Sbjct: 199 VAYVEFYTPDSILKALACNGQALMGHPIRIQ--------------ASQAEKNRAAEAARV 244
Query: 284 ASGAIGGAEGPDRVFVGGLP---YYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGF 340
+ P RV+VGGL + E++I++L FG + ++ K TG +G+ F
Sbjct: 245 VQNQ--QQDLPMRVYVGGLTGVLIHLQESEIRKLFAPFGDIQCIEIAKSPYTGRPRGFAF 302
Query: 341 CVYQDPAVTDIACAALNGLKMGDKTLTV 368
+Y +A AA++ ++ D TL V
Sbjct: 303 VIYSRACDARVAIAAMHKYRIADTTLEV 330
>gi|380012525|ref|XP_003690330.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 39-like [Apis
florea]
Length = 506
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 91/228 (39%), Gaps = 31/228 (13%)
Query: 148 LPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSA 207
LPFG G PL R AR V+ L + + FFS S
Sbjct: 123 LPFGK---GVSPLGIRNDELTPEERDARTVFCMQLSQRIRARDLEEFFS---------SV 170
Query: 208 GPGDAVVNVYINHEKKF---AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLA 264
G V + N ++F A+VE + E + A+ L G GV + V+ T A
Sbjct: 171 GKVQDVRLITCNKTRRFKGIAYVEFKDPESVTLALGLSGQKLLGVPIVVQH------TQA 224
Query: 265 AALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324
G PNL G GP R++VG L + TE ++ + E FG +
Sbjct: 225 EKNRMGNSMPNL----------MPKGQTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNI 274
Query: 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
L+ D TG SKGYGF +++ A LNG ++ + + V T
Sbjct: 275 QLIMDPXTGRSKGYGFLTFRNADDAKKALEQLNGFELAGRPMKVGNVT 322
>gi|358254188|dbj|GAA54213.1| cleavage stimulation factor subunit 2 [Clonorchis sinensis]
Length = 437
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+FVG +PY TE ++ EL G + GF LV DR++G KGYGFC Y +PA+ A L
Sbjct: 23 IFVGNIPYEATEEKLIELFGKAGPVIGFRLVYDRESGKPKGYGFCEYNNPAIAASALRNL 82
Query: 357 NGLKMGDKTLTV 368
++ + L +
Sbjct: 83 QNIEFNGRPLRI 94
>gi|343427636|emb|CBQ71163.1| related to HRP1-subunit of cleavage factor I [Sporisorium reilianum
SRZ2]
Length = 588
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 100/238 (42%), Gaps = 19/238 (7%)
Query: 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEA 235
++++GGL E ++ +FSQ G + + + FAF+ +
Sbjct: 168 KMFIGGLNWDTTEDSLRRYFSQF------GEVGHCTVMRDNMTGRSRGFAFLNFVNPKAV 221
Query: 236 SNAMA----LDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGA 291
+ + LDG + + R D N G GQ S N N G G +
Sbjct: 222 NTVVVREHYLDGKVIDPKRAIPRPQRDSNFNAHHNGGQGQASYNNNGGGAGGGGGYNAQS 281
Query: 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDI 351
+ ++FVGGLP T + E FGTL + DR+TGN +G+GF YQD A
Sbjct: 282 Q---KLFVGGLPASVTPASFRMFFEQFGTLAECTCMMDRETGNPRGFGFLTYQDDAALQH 338
Query: 352 ACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLG 409
+ L K + V+RA QSK + +S+ + QQ I +MA+ GM G
Sbjct: 339 VLSTRP-LVFDGKEVDVKRA-----QSKNDPQSLQIRRQQRIDNPEMAMGGMGMQQPG 390
>gi|149756182|ref|XP_001494921.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Equus
caballus]
Length = 412
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 176 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 219
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 220 -MANNLQKGSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 278
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 279 TFSDSECARRALEQLNGFELAGRPMRVGHVT 309
>gi|410961884|ref|XP_003987508.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Felis catus]
Length = 411
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 174 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 217
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 218 -MANNLQKGSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 276
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 277 TFSDSECARRALEQLNGFELAGRPMRVGHVT 307
>gi|291403543|ref|XP_002718110.1| PREDICTED: RNA binding motif protein 23 isoform 3 [Oryctolagus
cuniculus]
Length = 428
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 193 KGIAYVEFCDIQAVPLAIGLTGQRLLGVPIMVQASQAEKNRLAA---------------- 236
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 237 -MANNLQKGSGGPLRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 295
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 296 TFSDSECGRRALEQLNGFELAGRPMRVGHVT 326
>gi|397473315|ref|XP_003808160.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Pan paniscus]
Length = 408
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 173 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 216
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 217 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 275
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 276 TFSDSECARRALEQLNGFELAGRPMRVGHVT 306
>gi|332019312|gb|EGI59819.1| RNA-binding protein 39 [Acromyrmex echinatior]
Length = 528
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 85/204 (41%), Gaps = 28/204 (13%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF---AFVE 228
R AR V+ L + + FFS S G V + N ++F A+VE
Sbjct: 166 RDARTVFCMQLSQRIRARDLEEFFS---------SVGKVQDVRLITCNKTRRFKGIAYVE 216
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
+ E + A+ L G GV + V+ T A G PNL
Sbjct: 217 FKDPESVTLALGLSGQKLLGVPIVVQH------TQAEKNRMGNSMPNL----------MP 260
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
G GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF +++
Sbjct: 261 KGQTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADD 320
Query: 349 TDIACAALNGLKMGDKTLTVRRAT 372
A LNG ++ + + V T
Sbjct: 321 AKKALEQLNGFELAGRPMKVGNVT 344
>gi|170054071|ref|XP_001862961.1| cleavage stimulation factor 64 kDa subunit [Culex quinquefasciatus]
gi|167874431|gb|EDS37814.1| cleavage stimulation factor 64 kDa subunit [Culex quinquefasciatus]
Length = 400
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++K++ G + LV DR++G KGYGFC Y+D A L
Sbjct: 17 VFVGNIPYEATEEKLKDIFSEVGPVISLKLVFDRESGKPKGYGFCEYKDQETALSAMRNL 76
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESIL 386
NG ++G + L R A + +S+ E ++L
Sbjct: 77 NGYEIGGRAL--RVDNACTEKSRMEMAALL 104
>gi|383864352|ref|XP_003707643.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Megachile
rotundata]
Length = 530
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 149 PFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAG 208
PFG G PL +T + R AR V+ L + + FFS S G
Sbjct: 149 PFGK---GVSPLGINDELTPEE-RDARTVFCMQLSQRIRARDLEDFFS---------SVG 195
Query: 209 PGDAVVNVYINHEKKF---AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAA 265
V + N ++F A+VE + E + A+ L G GV + V+ T A
Sbjct: 196 KVQDVRLITCNKTRRFKGIAYVEFKDPESVTLALGLSGQKLLGVPIVVQH------TQAE 249
Query: 266 ALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFD 325
G PNL G GP R++VG L + TE ++ + E FG +
Sbjct: 250 KNRMGNSMPNL----------MPKGQTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQ 299
Query: 326 LVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
L+ D +TG SKGYGF +++ A LNG ++ + + V T
Sbjct: 300 LIMDPETGRSKGYGFLTFRNADDAKKALEQLNGFELAGRPMKVGNVT 346
>gi|307180960|gb|EFN68748.1| RNA-binding protein 39 [Camponotus floridanus]
Length = 529
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 85/204 (41%), Gaps = 28/204 (13%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF---AFVE 228
R AR V+ L + + FFS S G V + N ++F A+VE
Sbjct: 167 RDARTVFCMQLSQRIRARDLEEFFS---------SVGKVQDVRLITCNKTRRFKGIAYVE 217
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
+ E + A+ L G GV + V+ T A G PNL
Sbjct: 218 FKDPESVTLALGLSGQKLLGVPIVVQH------TQAEKNRMGNSMPNL----------MP 261
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
G GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF +++
Sbjct: 262 KGQTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADD 321
Query: 349 TDIACAALNGLKMGDKTLTVRRAT 372
A LNG ++ + + V T
Sbjct: 322 AKKALEQLNGFELAGRPMKVGNVT 345
>gi|291400895|ref|XP_002716702.1| PREDICTED: RNA binding motif protein, X-linked 2 [Oryctolagus
cuniculus]
Length = 198
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVGGLPY TE I + +G + LV+D+ TG S+G+GF Y+D T +A
Sbjct: 37 VFVGGLPYELTEGDILCVFSQYGEIVNIHLVRDKKTGKSRGFGFICYEDQRSTVLAVDNF 96
Query: 357 NGLKMGDKTLTVRRAT 372
NG+K+ +T+ V A+
Sbjct: 97 NGIKIKGRTIRVDHAS 112
>gi|291403541|ref|XP_002718109.1| PREDICTED: RNA binding motif protein 23 isoform 2 [Oryctolagus
cuniculus]
Length = 444
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 209 KGIAYVEFCDIQAVPLAIGLTGQRLLGVPIMVQASQAEKNRLAA---------------- 252
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 253 -MANNLQKGSGGPLRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 311
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 312 TFSDSECGRRALEQLNGFELAGRPMRVGHVT 342
>gi|114652071|ref|XP_522797.2| PREDICTED: probable RNA-binding protein 23 isoform 12 [Pan
troglodytes]
Length = 408
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 173 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 216
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG+SKGYGF
Sbjct: 217 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGHSKGYGFI 275
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 276 TFSDSECARRALEQLNGFELAGRPMRVGHVT 306
>gi|410989439|ref|XP_004000969.1| PREDICTED: RNA-binding motif protein, X-linked 2 [Felis catus]
Length = 507
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 22/129 (17%)
Query: 262 TLAAALGPGQPSPNLNLAAV--------------------GLASGAIGGAEGPDR--VFV 299
LAA GP + P+L A + G+A +E D +F+
Sbjct: 162 CLAAERGPAEMKPHLTSACLCSPLTKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFL 221
Query: 300 GGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL 359
GGLPY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A NG+
Sbjct: 222 GGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGI 281
Query: 360 KMGDKTLTV 368
K+ +T+ V
Sbjct: 282 KIKGRTIRV 290
>gi|410899827|ref|XP_003963398.1| PREDICTED: RNA-binding protein 39-like [Takifugu rubripes]
Length = 500
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
G+ GP R++VG L + TE ++ + E FG + G L+ D +TG SKGYGF + D
Sbjct: 224 GSSGPMRLYVGSLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECA 283
Query: 350 DIACAALNGLKMGDKTLTVRRATASSGQS 378
A LNG ++ + + V T S S
Sbjct: 284 KKALEQLNGFELAGRPMKVGHVTERSDSS 312
>gi|190402270|gb|ACE77680.1| RNA binding motif protein 39 isoform a (predicted) [Sorex araneus]
Length = 435
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 236
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 344
>gi|349604477|gb|AEQ00017.1| RNA-binding protein 39-like protein, partial [Equus caballus]
Length = 374
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 177 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 219
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 220 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 279
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
+ D A LNG ++ + + V R ASS S
Sbjct: 280 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 320
>gi|383864354|ref|XP_003707644.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Megachile
rotundata]
Length = 507
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 85/204 (41%), Gaps = 28/204 (13%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF---AFVE 228
R AR V+ L + + FFS S G V + N ++F A+VE
Sbjct: 145 RDARTVFCMQLSQRIRARDLEDFFS---------SVGKVQDVRLITCNKTRRFKGIAYVE 195
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
+ E + A+ L G GV + V+ T A G PNL
Sbjct: 196 FKDPESVTLALGLSGQKLLGVPIVVQH------TQAEKNRMGNSMPNL----------MP 239
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
G GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF +++
Sbjct: 240 KGQTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADD 299
Query: 349 TDIACAALNGLKMGDKTLTVRRAT 372
A LNG ++ + + V T
Sbjct: 300 AKKALEQLNGFELAGRPMKVGNVT 323
>gi|426376370|ref|XP_004054974.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Gorilla
gorilla gorilla]
Length = 421
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 191 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 234
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 235 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 293
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 294 TFSDSECARRALEQLNGFELAGRPMRVGHVT 324
>gi|156543304|ref|XP_001603981.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Nasonia
vitripennis]
Length = 139
Score = 67.0 bits (162), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+F+GGLPY TE + + +G + +LV+D+DTG KGYGF Y+D T +A L
Sbjct: 36 IFIGGLPYDLTEGDVIAVFSQYGEIVNINLVRDKDTGKQKGYGFLCYEDQRSTILAVDNL 95
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 96 NGIKILGRTIRV 107
>gi|452823773|gb|EME30781.1| mRNA splicing factor, putative isoform 1 [Galdieria sulphuraria]
Length = 291
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 71/144 (49%), Gaps = 7/144 (4%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG + Y +E Q++E+L G + F +V DR+TG KGY FC Y D + A L
Sbjct: 7 VFVGNIAYNTSEEQLQEILSQIGPILSFRVVYDRETGKPKGYAFCEYPDAEMALSAIRNL 66
Query: 357 NGLKMGDKTLTVRRATASS---GQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMS 413
NG ++ +TL V A + GQS E+ ++ AL TSG G+S
Sbjct: 67 NGTELNGRTLRVDLADSDKRELGQSAANMETGNNNPSTASNMKAGALNTSGGTGNIQGLS 126
Query: 414 LFGE--TLAKVLC--LTEMMKSMK 433
G +L ++ C + E+M MK
Sbjct: 127 NLGAKGSLEQLSCQQIHEIMLQMK 150
>gi|432093575|gb|ELK25559.1| RNA-binding motif protein, X-linked 2 [Myotis davidii]
Length = 337
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N +G+A +E D +F+GGLPY TE I + +G + +LV+D+ T
Sbjct: 14 NEREVQLGVADTVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 73
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQ 391
G SKG+ F Y+D T +A NG+K+ +T+ V + ++E+ I+ + Q
Sbjct: 74 GKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRTPKESEEMDIVTKELQ 132
>gi|403281374|ref|XP_003932163.1| PREDICTED: RNA-binding protein 39 [Saimiri boliviensis boliviensis]
Length = 502
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 236
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 344
>gi|432865706|ref|XP_004070573.1| PREDICTED: RNA-binding protein 39-like [Oryzias latipes]
Length = 516
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
G+ GP R++VG L + TE ++ + E FG + G L+ D +TG SKGYGF + D
Sbjct: 241 GSAGPMRLYVGSLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECA 300
Query: 350 DIACAALNGLKMGDKTLTVRRATASSGQS 378
A LNG ++ + + V T S S
Sbjct: 301 KKALEQLNGFELAGRPMKVGHVTERSDSS 329
>gi|417411155|gb|JAA52027.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Desmodus rotundus]
Length = 491
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 161 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 203
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 204 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 263
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
+ D A LNG ++ + + V R ASS S
Sbjct: 264 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 304
>gi|327271618|ref|XP_003220584.1| PREDICTED: RNA-binding protein 39-like [Anolis carolinensis]
Length = 578
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 250 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 292
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 293 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 352
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 353 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 400
>gi|348503003|ref|XP_003439056.1| PREDICTED: RNA-binding protein 39-like [Oreochromis niloticus]
Length = 498
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
G+ GP R++VG L + TE ++ + E FG + G L+ D +TG SKGYGF + D
Sbjct: 222 GSSGPMRLYVGSLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECA 281
Query: 350 DIACAALNGLKMGDKTLTVRRATASSGQS 378
A LNG ++ + + V T S S
Sbjct: 282 KKALEQLNGFELAGRPMKVGHVTERSDSS 310
>gi|47223170|emb|CAG11305.1| unnamed protein product [Tetraodon nigroviridis]
Length = 515
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
G+ GP R++VG L + TE ++ + E FG + G L+ D +TG SKGYGF + D
Sbjct: 239 GSSGPMRLYVGSLHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECA 298
Query: 350 DIACAALNGLKMGDKTLTVRRATASSGQS 378
A LNG ++ + + V T S S
Sbjct: 299 KKALEQLNGFELAGRPMKVGHVTERSDSS 327
>gi|326931688|ref|XP_003211958.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 39-like
[Meleagris gallopavo]
Length = 571
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 243 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 285
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 286 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 345
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 346 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 393
>gi|312371125|gb|EFR19385.1| hypothetical protein AND_22609 [Anopheles darlingi]
Length = 377
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE +KE+ G + LV DR+TG KGYGFC Y+D A L
Sbjct: 18 VFVGNIPYDATEEALKEIFCEVGLVMSMKLVYDRETGKPKGYGFCEYKDKETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESIL 386
NG G + L V A +S+ E ++L
Sbjct: 78 NGYVFGGRPLRVDNACTE--KSRLEMAALL 105
>gi|298248970|ref|ZP_06972774.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
gi|297546974|gb|EFH80841.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
Length = 104
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
R++VGGLPY TE + +L E G + ++ DR+TG SKG+GF T A
Sbjct: 2 RIYVGGLPYQSTEQDLIQLFEQIGQVTSATVITDRETGRSKGFGFVEMSSDDETRAAIEQ 61
Query: 356 LNGLKMGDKTLTVRRA 371
LNG +GD+T+TV A
Sbjct: 62 LNGSTLGDRTITVNEA 77
>gi|357612395|gb|EHJ67964.1| putative RNA-binding region-containing protein [Danaus plexippus]
Length = 536
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 82/204 (40%), Gaps = 28/204 (13%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF---AFVE 228
R R V+ L + + FFS V G V + N ++F A++E
Sbjct: 179 RDLRTVFCMQLSQRIRAKDLEEFFSSV---------GKVRDVRLITCNKTRRFKGIAYIE 229
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
+ E A+ L G GV + V+ T A G PNL A
Sbjct: 230 FKDAESVPLALGLTGQKLLGVPIIVQH------TQAEKNRVGNTLPNL----------AP 273
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
+ GP R++VG L + TE ++ + E FG + L+ D DTG SKGYGF +
Sbjct: 274 KTSNGPTRLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPDTGKSKGYGFLTFHHATD 333
Query: 349 TDIACAALNGLKMGDKTLTVRRAT 372
A LNG ++ + + V T
Sbjct: 334 AKKAMEQLNGFELAGRPMKVGNVT 357
>gi|213408745|ref|XP_002175143.1| RNA-binding protein [Schizosaccharomyces japonicus yFS275]
gi|212003190|gb|EEB08850.1| RNA-binding protein [Schizosaccharomyces japonicus yFS275]
Length = 308
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 38/73 (52%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+ ++ GT+ F LV D +T KGYGFC + DP A L
Sbjct: 9 VFVGNIPYDATEKQMADIFHQIGTVRSFKLVLDPETNQPKGYGFCEFHDPETAASAVRNL 68
Query: 357 NGLKMGDKTLTVR 369
N G + L V
Sbjct: 69 NNFPFGARKLRVE 81
>gi|298710792|emb|CBJ32209.1| RNA-binding protein SiahBP [Ectocarpus siliculosus]
Length = 696
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 125/308 (40%), Gaps = 60/308 (19%)
Query: 111 RSGFDMAPPAAAMLPG---------------AAVPGQLPGVPSAVPEMAQNMLPFGATQL 155
+ G+ APP A ++P AA GQ P V S A L GA
Sbjct: 209 KKGWGDAPPVAPVVPMTPLQELQRKLAEEQVAAAMGQAPPVTSVSAGAAALGLTMGAAMQ 268
Query: 156 GAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVN 215
Q Q + + RR+YVG L E I + F+ A+
Sbjct: 269 APGAGTRTQTAPAQPS-NPRRIYVGSLHYELKESDITSIFANF------------GALKL 315
Query: 216 VYINHE------KKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAAL- 267
V ++H+ K F F+E V+ A A+ A++G G A++V RP + + +A +
Sbjct: 316 VDMSHDSSTGRHKGFCFIEYVDVKSADAALRAMNGFELAGRAIKVGRPLNTDSGVAGGIE 375
Query: 268 GPGQPS----PNLNLAAVGLASGAIGGAEGP-------------------DRVFVGGLPY 304
G G P+ P + ++ A GGA+G +++VG +
Sbjct: 376 GMGLPAAMQLPGMAAFMAQHSTSAAGGAQGSGVAAEQLKAAMGMTTAPAQTKIYVGNVEP 435
Query: 305 YFTETQIKELLESFGTLHGFDLVKD-RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 363
+ T IK + E FG + G ++V+D + GN KG+GF Y +V ++ ++
Sbjct: 436 HITTEMIKTVFEPFGMVVGAEMVQDPSNPGNHKGFGFIQYAQESVARTVIDTMSSFELAG 495
Query: 364 KTLTVRRA 371
+TL V A
Sbjct: 496 RTLRVAWA 503
>gi|119596572|gb|EAW76166.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_e [Homo
sapiens]
Length = 445
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 236
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
+ D A LNG ++ + + V R ASS S
Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 337
>gi|296483628|tpg|DAA25743.1| TPA: RNA binding motif protein 23 [Bos taurus]
Length = 463
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 81/190 (42%), Gaps = 23/190 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 222 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 265
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L TE ++ +LE FG + L+KD +TG SKGYGF
Sbjct: 266 -MANNLQKGSGGPVRLYVGSLHCNITEDMLRGILEPFGKIDNIVLMKDSETGRSKGYGFI 324
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATA--SSGQSKT----EQESILAQAQQHIAI 395
+ D A LNG ++ + + + T G T +QE L A H+ +
Sbjct: 325 TFSDSECARRALEQLNGFELAGRPMRIGHVTERPDGGTDITFPDGDQELDLGSAGGHLQL 384
Query: 396 QKMALQTSGM 405
+ SG+
Sbjct: 385 MAKLAEGSGI 394
>gi|324514401|gb|ADY45855.1| Cleavage stimulation factor subunit 2 [Ascaris suum]
Length = 324
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG + Y E Q+K++ G + LV DR+TG KGYGFC Y DP + A L
Sbjct: 25 VFVGNISYEVGEEQLKQVFSQVGPVVHLRLVHDRETGKPKGYGFCEYNDPQTAESAIRNL 84
Query: 357 NGLKMGDKTLTVRRA 371
NG ++ + L V A
Sbjct: 85 NGYELNGRQLRVDSA 99
>gi|281351269|gb|EFB26853.1| hypothetical protein PANDA_007127 [Ailuropoda melanoleuca]
Length = 334
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 254 RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQI 311
R P NP L N +G+A +E D +F+GGLPY TE I
Sbjct: 5 REPKKMNPLTKVKL---INELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDI 61
Query: 312 KELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
+ +G + +LV+D+ TG SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 62 ICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRV 118
>gi|27734072|ref|NP_775552.1| RNA-binding motif protein, X-linked 2 [Mus musculus]
gi|61230302|sp|Q8R0F5.1|RBMX2_MOUSE RecName: Full=RNA-binding motif protein, X-linked 2
gi|20071694|gb|AAH26976.1| RNA binding motif protein, X-linked 2 [Mus musculus]
gi|26345092|dbj|BAC36195.1| unnamed protein product [Mus musculus]
gi|74207503|dbj|BAE40004.1| unnamed protein product [Mus musculus]
Length = 326
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+FVGGLPY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 98 NGIKIKGRTIRV 109
>gi|119596573|gb|EAW76167.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_f [Homo
sapiens]
Length = 423
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A +A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYG
Sbjct: 235 AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG 294
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
F + D A LNG ++ + + V R ASS S
Sbjct: 295 FITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 337
>gi|115497272|ref|NP_001069104.1| probable RNA-binding protein 23 [Bos taurus]
gi|113911797|gb|AAI22594.1| RNA binding motif protein 23 [Bos taurus]
Length = 463
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 81/190 (42%), Gaps = 23/190 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 222 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 265
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L TE ++ +LE FG + L+KD +TG SKGYGF
Sbjct: 266 -MANNLQKGSGGPVRLYVGSLHCNITEDMLRGILEPFGKIDNIVLMKDSETGRSKGYGFI 324
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATA--SSGQSKT----EQESILAQAQQHIAI 395
+ D A LNG ++ + + + T G T +QE L A H+ +
Sbjct: 325 TFSDSECARRALEQLNGFELAGRPMRIGHVTERPDGGTDITFPDGDQELDLGSAGGHLQL 384
Query: 396 QKMALQTSGM 405
+ SG+
Sbjct: 385 MAKLAEGSGI 394
>gi|426232776|ref|XP_004010396.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Ovis aries]
Length = 447
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 206 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAT--------------- 250
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
AS G+ GP R++VG L + TE ++ + E FG + L+KD +TG SKGYGF
Sbjct: 251 --ASNLQKGSGGPVRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSETGCSKGYGFI 308
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + + T
Sbjct: 309 TFSDSECARRALEQLNGFELAGRPMRIGHVT 339
>gi|307195359|gb|EFN77277.1| RNA-binding protein 39 [Harpegnathos saltator]
Length = 370
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 85/204 (41%), Gaps = 28/204 (13%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF---AFVE 228
R AR V+ L + + FFS S G V + N ++F A+VE
Sbjct: 8 RDARTVFCMQLSQRIRARDLEEFFS---------SVGKVQDVRLITCNKTRRFKGIAYVE 58
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
+ E + A+ L G GV + V+ T A G PNL
Sbjct: 59 FKDPESVTLALGLSGQKLLGVPIVVQH------TQAEKNRMGNSMPNL----------MP 102
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
G GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF +++
Sbjct: 103 KGQTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFRNADD 162
Query: 349 TDIACAALNGLKMGDKTLTVRRAT 372
A LNG ++ + + V T
Sbjct: 163 AKKALEQLNGFELAGRPMKVGNVT 186
>gi|426232774|ref|XP_004010395.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Ovis aries]
Length = 463
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 222 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAT--------------- 266
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
AS G+ GP R++VG L + TE ++ + E FG + L+KD +TG SKGYGF
Sbjct: 267 --ASNLQKGSGGPVRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSETGCSKGYGFI 324
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + + T
Sbjct: 325 TFSDSECARRALEQLNGFELAGRPMRIGHVT 355
>gi|158292144|ref|XP_313699.3| AGAP004414-PA [Anopheles gambiae str. PEST]
gi|157017295|gb|EAA09129.3| AGAP004414-PA [Anopheles gambiae str. PEST]
Length = 390
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE +KE+ G + LV DR+TG KGYGFC Y+D A L
Sbjct: 18 VFVGNIPYDATEEALKEIFCEVGLVLSMKLVYDRETGKPKGYGFCEYKDKETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESIL 386
NG G + L V A + +S+ E ++L
Sbjct: 78 NGYVFGGRPLRVD--NACTEKSRMEMAALL 105
>gi|431894348|gb|ELK04148.1| RNA-binding protein 39 [Pteropus alecto]
Length = 601
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 271 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 313
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 314 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 373
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 374 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 421
>gi|88682991|gb|AAI05542.1| RBM39 protein [Bos taurus]
Length = 528
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 198 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 240
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 241 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 300
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
+ D A LNG ++ + + V R ASS S
Sbjct: 301 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 341
>gi|417411216|gb|JAA52053.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Desmodus rotundus]
Length = 499
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 163 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 205
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 206 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 265
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
+ D A LNG ++ + + V R ASS S
Sbjct: 266 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 306
>gi|291403539|ref|XP_002718108.1| PREDICTED: RNA binding motif protein 23 isoform 1 [Oryctolagus
cuniculus]
Length = 410
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 175 KGIAYVEFCDIQAVPLAIGLTGQRLLGVPIMVQASQAEKNRLAA---------------- 218
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 219 -MANNLQKGSGGPLRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 277
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 278 TFSDSECGRRALEQLNGFELAGRPMRVGHVT 308
>gi|449460375|ref|XP_004147921.1| PREDICTED: zinc finger CCCH domain-containing protein 25-like
[Cucumis sativus]
Length = 395
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N AA+G++ A A+ D VFVGG+PY TE + + +G + +L++D+ T
Sbjct: 14 NSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVNLIRDKGT 73
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKM 361
G SKGY F Y+D T++A LNG ++
Sbjct: 74 GKSKGYAFVAYEDQRSTNLAVDNLNGAQI 102
>gi|330688445|ref|NP_001193433.1| RNA-binding protein 39 [Bos taurus]
Length = 530
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 200 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 242
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 243 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 302
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
+ D A LNG ++ + + V R ASS S
Sbjct: 303 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 343
>gi|52545994|emb|CAH18281.2| hypothetical protein [Homo sapiens]
Length = 513
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 177 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 219
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 220 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 279
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 280 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 327
>gi|74179655|dbj|BAE22477.1| unnamed protein product [Mus musculus]
Length = 521
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 191 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 233
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 234 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 293
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
+ D A LNG ++ + + V R ASS S
Sbjct: 294 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 334
>gi|194384132|dbj|BAG64839.1| unnamed protein product [Homo sapiens]
Length = 521
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 185 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 227
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 228 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 287
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
+ D A LNG ++ + + V R ASS S
Sbjct: 288 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 328
>gi|157137809|ref|XP_001664044.1| RNA-binding protein [Aedes aegypti]
gi|108869641|gb|EAT33866.1| AAEL013869-PA [Aedes aegypti]
Length = 399
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++K++ G + LV DR++G KGYGFC Y+D A L
Sbjct: 16 VFVGNIPYEATEEKLKDIFCEVGPVISLKLVFDRESGKPKGYGFCEYKDQETALSAMRNL 75
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILAQAQ 390
NG ++G + L V A + +S+ E ++L Q
Sbjct: 76 NGYEIGGRALRVD--NACTEKSRMEMAALLQGPQ 107
>gi|332026997|gb|EGI67093.1| RNA-binding motif protein, X-linked 2 [Acromyrmex echinatior]
Length = 172
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+FVGGLPY TE + + +G + +L++D+DTG KGYGF Y+D T +A
Sbjct: 69 IFVGGLPYNLTEGDVIAIFSQYGEVVNINLIRDKDTGKQKGYGFLCYEDQRSTILAVDNF 128
Query: 357 NGLKMGDKTLTV 368
NG+K+ + + V
Sbjct: 129 NGIKILGRVIRV 140
>gi|148674239|gb|EDL06186.1| RNA binding motif protein 39, isoform CRA_d [Mus musculus]
Length = 507
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 177 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 219
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 220 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 279
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
+ D A LNG ++ + + V R ASS S
Sbjct: 280 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 320
>gi|118100450|ref|XP_425690.2| PREDICTED: RNA-binding protein 39 [Gallus gallus]
gi|363741409|ref|XP_003642487.1| PREDICTED: RNA-binding protein 39-like [Gallus gallus]
Length = 522
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 236
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 344
>gi|4757926|ref|NP_004893.1| RNA-binding protein 39 isoform b [Homo sapiens]
gi|197097940|ref|NP_001125339.1| RNA-binding protein 39 [Pongo abelii]
gi|149733223|ref|XP_001501876.1| PREDICTED: RNA-binding protein 39 isoform 2 [Equus caballus]
gi|194044529|ref|XP_001925282.1| PREDICTED: RNA-binding protein 39 isoform 2 [Sus scrofa]
gi|296199701|ref|XP_002747278.1| PREDICTED: RNA-binding protein 39 isoform 1 [Callithrix jacchus]
gi|301762104|ref|XP_002916459.1| PREDICTED: RNA-binding protein 39-like [Ailuropoda melanoleuca]
gi|332858226|ref|XP_514808.3| PREDICTED: uncharacterized protein LOC458443 isoform 5 [Pan
troglodytes]
gi|344279921|ref|XP_003411734.1| PREDICTED: RNA-binding protein 39 isoform 2 [Loxodonta africana]
gi|345789988|ref|XP_865124.2| PREDICTED: RNA-binding protein 39 isoform 12 [Canis lupus
familiaris]
gi|354477984|ref|XP_003501197.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Cricetulus
griseus]
gi|426391509|ref|XP_004062115.1| PREDICTED: RNA-binding protein 39 isoform 2 [Gorilla gorilla
gorilla]
gi|75070825|sp|Q5RC80.1|RBM39_PONAB RecName: Full=RNA-binding protein 39; AltName: Full=RNA-binding
motif protein 39
gi|405192|gb|AAA16346.1| splicing factor [Homo sapiens]
gi|55727753|emb|CAH90627.1| hypothetical protein [Pongo abelii]
gi|119596568|gb|EAW76162.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_c [Homo
sapiens]
gi|119596569|gb|EAW76163.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_c [Homo
sapiens]
gi|296480931|tpg|DAA23046.1| TPA: RNA binding motif protein 39 [Bos taurus]
gi|307686241|dbj|BAJ21051.1| RNA binding motif protein 39 [synthetic construct]
gi|344246681|gb|EGW02785.1| RNA-binding protein 39 [Cricetulus griseus]
gi|380783275|gb|AFE63513.1| RNA-binding protein 39 isoform b [Macaca mulatta]
gi|383408127|gb|AFH27277.1| RNA-binding protein 39 isoform b [Macaca mulatta]
gi|384939256|gb|AFI33233.1| RNA-binding protein 39 isoform b [Macaca mulatta]
gi|410218748|gb|JAA06593.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410255438|gb|JAA15686.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410292902|gb|JAA25051.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410350855|gb|JAA42031.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410350863|gb|JAA42035.1| RNA binding motif protein 39 [Pan troglodytes]
Length = 524
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 236
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
+ D A LNG ++ + + V R ASS S
Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 337
>gi|61557287|ref|NP_001013225.1| RNA-binding protein 39 [Rattus norvegicus]
gi|392346874|ref|XP_003749654.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Rattus
norvegicus]
gi|60552170|gb|AAH91394.1| RNA binding motif protein 39 [Rattus norvegicus]
gi|74196119|dbj|BAE32977.1| unnamed protein product [Mus musculus]
gi|149030834|gb|EDL85861.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_f [Rattus
norvegicus]
Length = 524
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 236
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
+ D A LNG ++ + + V R ASS S
Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 337
>gi|224077247|ref|XP_002192236.1| PREDICTED: RNA-binding protein 39 [Taeniopygia guttata]
Length = 522
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 236
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 344
>gi|426376374|ref|XP_004054976.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Gorilla
gorilla gorilla]
Length = 403
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 173 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 216
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 217 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 275
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 276 TFSDSECARRALEQLNGFELAGRPMRVGHVT 306
>gi|296199709|ref|XP_002747282.1| PREDICTED: RNA-binding protein 39 isoform 5 [Callithrix jacchus]
Length = 504
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 168 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 210
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 211 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 270
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 271 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 318
>gi|194386036|dbj|BAG59582.1| unnamed protein product [Homo sapiens]
Length = 503
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 167 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 209
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 210 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 269
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 270 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 317
>gi|332249061|ref|XP_003273679.1| PREDICTED: RNA-binding protein 39 [Nomascus leucogenys]
Length = 432
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 273 SPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
SP A +A+ G+ GP R++VG L + TE ++ + E FG + L+ D +T
Sbjct: 136 SPAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSET 195
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
G SKGYGF + D A LNG ++ + + V R ASS S
Sbjct: 196 GRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 245
>gi|22330574|ref|NP_177325.2| cleavage stimulating factor 64 [Arabidopsis thaliana]
gi|7239507|gb|AAF43233.1|AC012654_17 Contains similarity to the polyadenylation factor 64 kDa subunit
from Xenopus laevis gb|U17394; It contains RNA
recognition motif PF|00076. ESTs gb|AI993960 and T42211
come from this gene [Arabidopsis thaliana]
gi|110738120|dbj|BAF00992.1| cleavage stimulation factor like protein [Arabidopsis thaliana]
gi|332197113|gb|AEE35234.1| cleavage stimulating factor 64 [Arabidopsis thaliana]
Length = 461
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 46/88 (52%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q++E+ G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
++ + L V A G KT +S
Sbjct: 71 QSYEINGRQLRVDFAENDKGTDKTRDQS 98
>gi|395329428|gb|EJF61815.1| hypothetical protein DICSQDRAFT_154995 [Dichomitus squalens
LYAD-421 SS1]
Length = 374
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY E Q+ ++ +S G + G LV DRDTG KGYGFC + D A L
Sbjct: 5 VFVGNVPYNMAEDQLIDVFKSVGQVVGLRLVFDRDTGKPKGYGFCEFADHETAASAVRNL 64
Query: 357 NGLKMGDKTLTVRRA 371
NG ++G + L + A
Sbjct: 65 NGYEIGGRPLRIDLA 79
>gi|126291195|ref|XP_001371651.1| PREDICTED: RNA-binding protein 39 isoform 1 [Monodelphis domestica]
Length = 524
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 236
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 344
>gi|21591633|gb|AAM64164.1|AF515695_1 cleavage stimulation factor 64 [Arabidopsis thaliana]
Length = 461
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 46/88 (52%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q++E+ G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQES 384
++ + L V A G KT +S
Sbjct: 71 QSYEINGRQLRVDFAENDKGTDKTRDQS 98
>gi|355784531|gb|EHH65382.1| RNA-binding motif protein 39 [Macaca fascicularis]
Length = 530
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A +A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYG
Sbjct: 235 AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG 294
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
F + D A LNG ++ + + V R ASS S + + +
Sbjct: 295 FITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 344
>gi|395503034|ref|XP_003755878.1| PREDICTED: probable RNA-binding protein 23 [Sarcophilus harrisii]
Length = 451
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 219 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 262
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKG+GF
Sbjct: 263 -MANNLQKGSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDPDTGRSKGFGFL 321
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 322 TFSDSECARRALEQLNGFELAGRPMRVGHVT 352
>gi|126277396|ref|XP_001369125.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Monodelphis
domestica]
Length = 449
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 217 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 260
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKG+GF
Sbjct: 261 -MANNLQKGSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDPDTGRSKGFGFL 319
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 320 TFSDSECARRALEQLNGFELAGRPMRVGHVT 350
>gi|35493811|ref|NP_909122.1| RNA-binding protein 39 isoform a [Homo sapiens]
gi|281182530|ref|NP_001162566.1| RNA-binding protein 39 [Papio anubis]
gi|284004921|ref|NP_001164806.1| RNA-binding protein 39 [Oryctolagus cuniculus]
gi|149733225|ref|XP_001501869.1| PREDICTED: RNA-binding protein 39 isoform 1 [Equus caballus]
gi|296199703|ref|XP_002747279.1| PREDICTED: RNA-binding protein 39 isoform 2 [Callithrix jacchus]
gi|332858224|ref|XP_003316931.1| PREDICTED: uncharacterized protein LOC458443 isoform 1 [Pan
troglodytes]
gi|335304742|ref|XP_003360012.1| PREDICTED: RNA-binding protein 39 [Sus scrofa]
gi|344279919|ref|XP_003411733.1| PREDICTED: RNA-binding protein 39 isoform 1 [Loxodonta africana]
gi|345789986|ref|XP_864959.2| PREDICTED: RNA-binding protein 39 isoform 3 [Canis lupus
familiaris]
gi|354477982|ref|XP_003501196.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Cricetulus
griseus]
gi|397523808|ref|XP_003831910.1| PREDICTED: RNA-binding protein 39 [Pan paniscus]
gi|426391507|ref|XP_004062114.1| PREDICTED: RNA-binding protein 39 isoform 1 [Gorilla gorilla
gorilla]
gi|28201880|sp|Q14498.2|RBM39_HUMAN RecName: Full=RNA-binding protein 39; AltName: Full=Hepatocellular
carcinoma protein 1; AltName: Full=RNA-binding motif
protein 39; AltName: Full=RNA-binding region-containing
protein 2; AltName: Full=Splicing factor HCC1
gi|405194|gb|AAA16347.1| splicing factor [Homo sapiens]
gi|119596565|gb|EAW76159.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_a [Homo
sapiens]
gi|119596567|gb|EAW76161.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_a [Homo
sapiens]
gi|146327034|gb|AAI41836.1| RNA binding motif protein 39 [Homo sapiens]
gi|164623752|gb|ABY64678.1| RNA binding motif protein 39, isoform 1 (predicted) [Papio anubis]
gi|165971473|gb|AAI58173.1| RNA binding motif protein 39 [Homo sapiens]
gi|166831598|gb|ABY90123.1| RNA binding motif protein 39 isoform a (predicted) [Callithrix
jacchus]
gi|169731519|gb|ACA64891.1| RNA binding motif protein 39 isoform a (predicted) [Callicebus
moloch]
gi|197215647|gb|ACH53039.1| RNA binding motif protein 39 isoform a (predicted) [Otolemur
garnettii]
gi|217038339|gb|ACJ76632.1| RNA binding motif protein 39 isoform a (predicted) [Oryctolagus
cuniculus]
gi|229368730|gb|ACQ63013.1| RNA binding motif protein 39 isoform a (predicted) [Dasypus
novemcinctus]
gi|351702535|gb|EHB05454.1| RNA-binding protein 39 [Heterocephalus glaber]
gi|380783277|gb|AFE63514.1| RNA-binding protein 39 isoform a [Macaca mulatta]
gi|383408125|gb|AFH27276.1| RNA-binding protein 39 isoform a [Macaca mulatta]
gi|384939254|gb|AFI33232.1| RNA-binding protein 39 isoform a [Macaca mulatta]
gi|410218746|gb|JAA06592.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410255434|gb|JAA15684.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410292900|gb|JAA25050.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410292904|gb|JAA25052.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410350859|gb|JAA42033.1| RNA binding motif protein 39 [Pan troglodytes]
gi|440902514|gb|ELR53299.1| RNA-binding protein 39 [Bos grunniens mutus]
Length = 530
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 236
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 344
>gi|17063213|gb|AAL32373.1| transcription coactivator CAPER [Mus musculus]
Length = 530
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A +A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYG
Sbjct: 235 AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG 294
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
F + D A LNG ++ + + V R ASS S + + +
Sbjct: 295 FITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 344
>gi|118403314|ref|NP_573505.2| RNA-binding protein 39 [Mus musculus]
gi|392346872|ref|XP_003749653.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Rattus
norvegicus]
gi|341941811|sp|Q8VH51.2|RBM39_MOUSE RecName: Full=RNA-binding protein 39; AltName: Full=Coactivator of
activating protein 1 and estrogen receptors;
Short=Coactivator of AP-1 and ERs; AltName:
Full=RNA-binding motif protein 39; AltName:
Full=RNA-binding region-containing protein 2; AltName:
Full=Transcription coactivator CAPER
gi|55991480|gb|AAH86645.1| RNA binding motif protein 39 [Mus musculus]
gi|74151058|dbj|BAE27657.1| unnamed protein product [Mus musculus]
gi|148674237|gb|EDL06184.1| RNA binding motif protein 39, isoform CRA_b [Mus musculus]
Length = 530
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 236
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 344
>gi|432101442|gb|ELK29624.1| RNA-binding protein 39 [Myotis davidii]
Length = 491
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 172 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 214
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 215 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 274
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
+ D A LNG ++ + + V R ASS S
Sbjct: 275 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 315
>gi|410953912|ref|XP_003983612.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 39 [Felis
catus]
Length = 523
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A +A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYG
Sbjct: 234 AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG 293
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
F + D A LNG ++ + + V R ASS S
Sbjct: 294 FITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 336
>gi|281346065|gb|EFB21649.1| hypothetical protein PANDA_004543 [Ailuropoda melanoleuca]
Length = 497
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 161 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 203
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 204 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 263
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 264 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 311
>gi|336176066|ref|NP_001229529.1| RNA-binding protein 39 isoform d [Homo sapiens]
gi|73991836|ref|XP_865202.1| PREDICTED: RNA-binding protein 39 isoform 16 [Canis lupus
familiaris]
gi|296199705|ref|XP_002747280.1| PREDICTED: RNA-binding protein 39 isoform 3 [Callithrix jacchus]
gi|332858230|ref|XP_003316933.1| PREDICTED: uncharacterized protein LOC458443 isoform 3 [Pan
troglodytes]
gi|335304749|ref|XP_003360015.1| PREDICTED: RNA-binding protein 39 [Sus scrofa]
gi|338719245|ref|XP_003363967.1| PREDICTED: RNA-binding protein 39 [Equus caballus]
gi|426391513|ref|XP_004062117.1| PREDICTED: RNA-binding protein 39 isoform 4 [Gorilla gorilla
gorilla]
Length = 502
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 172 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 214
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 215 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 274
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
+ D A LNG ++ + + V R ASS S
Sbjct: 275 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 315
>gi|395505312|ref|XP_003756986.1| PREDICTED: RNA-binding protein 39 [Sarcophilus harrisii]
Length = 557
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 227 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 269
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 270 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 329
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 330 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 377
>gi|237829727|ref|XP_002364161.1| U2 small nuclear ribonucleoprotein auxiliary factor U2AF
[Toxoplasma gondii ME49]
gi|211961825|gb|EEA97020.1| U2 small nuclear ribonucleoprotein auxiliary factor U2AF
[Toxoplasma gondii ME49]
gi|221481075|gb|EEE19483.1| U2 small nuclear ribonucleoprotein auxiliary factor U2AF, putative
[Toxoplasma gondii GT1]
gi|221507020|gb|EEE32624.1| U2 small nuclear ribonucleoprotein auxiliary factor U2AF, putative
[Toxoplasma gondii VEG]
Length = 704
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEE 234
R +YVG LPP + F + M A+GG + PG V + + + +AFVE RT+EE
Sbjct: 113 RELYVGNLPPSLEVPQLMEFLNAAMAAVGG-ALLPGPPAVKAWRSTDGHYAFVEFRTMEE 171
Query: 235 ASNAMALDGIIFEGVAVRVRRPTDY 259
ASN M L+G+ G +R+ RP Y
Sbjct: 172 ASNGMQLNGLNCMGFNLRIGRPKTY 196
>gi|336176064|ref|NP_001229528.1| RNA-binding protein 39 isoform c [Homo sapiens]
gi|296199707|ref|XP_002747281.1| PREDICTED: RNA-binding protein 39 isoform 4 [Callithrix jacchus]
gi|332858228|ref|XP_003316932.1| PREDICTED: uncharacterized protein LOC458443 isoform 2 [Pan
troglodytes]
gi|335304745|ref|XP_003360013.1| PREDICTED: RNA-binding protein 39 [Sus scrofa]
gi|338719242|ref|XP_003363966.1| PREDICTED: RNA-binding protein 39 [Equus caballus]
gi|345789990|ref|XP_003433300.1| PREDICTED: RNA-binding protein 39 [Canis lupus familiaris]
gi|426391511|ref|XP_004062116.1| PREDICTED: RNA-binding protein 39 isoform 3 [Gorilla gorilla
gorilla]
gi|124297482|gb|AAI31544.1| RBM39 protein [Homo sapiens]
gi|194389138|dbj|BAG61586.1| unnamed protein product [Homo sapiens]
Length = 508
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A +A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYG
Sbjct: 213 AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG 272
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
F + D A LNG ++ + + V R ASS S
Sbjct: 273 FITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 315
>gi|126291198|ref|XP_001371677.1| PREDICTED: RNA-binding protein 39 isoform 2 [Monodelphis domestica]
Length = 533
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 236
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 344
>gi|343887401|ref|NP_001230600.1| RNA binding motif protein, X-linked 2 [Sus scrofa]
Length = 329
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N +G+A +E D +F+GGLPY TE I + +G + +LV+D+ T
Sbjct: 14 NEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 73
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 74 GKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRV 109
>gi|321460847|gb|EFX71885.1| hypothetical protein DAPPUDRAFT_93311 [Daphnia pulex]
Length = 81
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY +E Q+K + G + F +V+DR+TG S+G+GFC +Q P A L
Sbjct: 4 VFVGNIPYGVSEDQLKAIFSEAGPVVSFRIVQDRETGRSRGFGFCEFQSPDSAQTAMRNL 63
Query: 357 NGLKMGDKTLTVRRAT 372
NG ++ ++L V A
Sbjct: 64 NGYELNGRSLRVDSAN 79
>gi|221044666|dbj|BAH14010.1| unnamed protein product [Homo sapiens]
Length = 270
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 37 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 80
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 81 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 139
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 140 TFSDSECARRALEQLNGFELAGRPMRVGHVT 170
>gi|426241410|ref|XP_004014584.1| PREDICTED: RNA-binding protein 39 isoform 5 [Ovis aries]
Length = 530
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 200 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 242
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 243 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 302
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
+ D A LNG ++ + + V R ASS S
Sbjct: 303 TFSDSECAKKALEQLNGFELTGRPMKVGHVTERTDASSASS 343
>gi|194386804|dbj|BAG61212.1| unnamed protein product [Homo sapiens]
Length = 502
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 172 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 214
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 215 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 274
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
+ D A LNG ++ + + V R ASS S
Sbjct: 275 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 315
>gi|193785136|dbj|BAG54289.1| unnamed protein product [Homo sapiens]
Length = 506
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 170 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 212
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 213 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 272
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 273 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 320
>gi|440906315|gb|ELR56591.1| Putative RNA-binding protein 23 [Bos grunniens mutus]
Length = 463
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 80/190 (42%), Gaps = 23/190 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 222 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 265
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L TE ++ +LE FG + L+KD +TG SKGYGF
Sbjct: 266 -MANNLQKGNGGPVRLYVGSLHCNITEDMLRGILEPFGKIDNIVLMKDSETGRSKGYGFI 324
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATA--SSGQSKT----EQESILAQAQQHIAI 395
+ D A LNG ++ + + + T G T +QE L A H+ +
Sbjct: 325 TFSDSECARRALEQLNGFELAGRPMRIGHVTERPDGGTDITFPDGDQELDLGSAAGHLQL 384
Query: 396 QKMALQTSGM 405
+ SG+
Sbjct: 385 MAKLAEGSGI 394
>gi|344286268|ref|XP_003414881.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Loxodonta
africana]
Length = 401
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 254 RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQI 311
R PT NP L N +G+A +E D VF+GGLPY TE I
Sbjct: 70 RGPTKMNPLTKVKL---INELNEREVQLGVADKVSWHSEYKDSAWVFLGGLPYELTEGDI 126
Query: 312 KELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
+ +G + +LV+D+ TG SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 127 ICVFSQYGEVVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRV 183
>gi|119586631|gb|EAW66227.1| RNA binding motif protein 23, isoform CRA_f [Homo sapiens]
Length = 269
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 37 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 80
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 81 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 139
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 140 TFSDSECARRALEQLNGFELAGRPMRVGHVT 170
>gi|197102126|ref|NP_001124751.1| probable RNA-binding protein 23 [Pongo abelii]
gi|55725769|emb|CAH89665.1| hypothetical protein [Pongo abelii]
Length = 423
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ A+ +P+
Sbjct: 191 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQ---------ASQAEKNRPA-------- 233
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 234 AMANNLQKGSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 293
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 294 TFSDSECARRALEQLNGFELAGRPMRVGHVT 324
>gi|126277398|ref|XP_001369153.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Monodelphis
domestica]
Length = 433
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 201 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 244
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKG+GF
Sbjct: 245 -MANNLQKGSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDPDTGRSKGFGFL 303
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 304 TFSDSECARRALEQLNGFELAGRPMRVGHVT 334
>gi|426241404|ref|XP_004014581.1| PREDICTED: RNA-binding protein 39 isoform 2 [Ovis aries]
Length = 524
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 236
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
+ D A LNG ++ + + V R ASS S
Sbjct: 297 TFSDSECAKKALEQLNGFELTGRPMKVGHVTERTDASSASS 337
>gi|31201653|ref|XP_309774.1| AGAP010918-PA [Anopheles gambiae str. PEST]
gi|21293399|gb|EAA05544.1| AGAP010918-PA [Anopheles gambiae str. PEST]
Length = 393
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE ++K++ G + LV DR++G KGYGFC Y+D A L
Sbjct: 16 VFVGNIPYEATEEKLKDIFCEVGPVLSLKLVFDRESGKPKGYGFCEYKDQETALSAMRNL 75
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILAQAQ 390
NG + G + L V A + +S+ E ++L Q
Sbjct: 76 NGYEFGGRALRVD--NACTEKSRMEMAALLQGPQ 107
>gi|301766430|ref|XP_002918652.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Ailuropoda
melanoleuca]
Length = 325
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N +G+A +E D +F+GGLPY TE I + +G + +LV+D+ T
Sbjct: 14 NEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 73
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 74 GKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRV 109
>gi|59858555|ref|NP_001012304.1| RNA-binding protein 39 [Danio rerio]
gi|27882534|gb|AAH44487.1| RNA binding motif protein 39a [Danio rerio]
gi|182892014|gb|AAI65689.1| Rbm39a protein [Danio rerio]
Length = 523
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A LA+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYG
Sbjct: 231 AAALANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYG 290
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
F + D A LNG ++ + + V R AS+ S + + +
Sbjct: 291 FITFSDAECAKKALEQLNGFELAGRPMKVGHVTERTDASTASSFLDNDEL 340
>gi|426241402|ref|XP_004014580.1| PREDICTED: RNA-binding protein 39 isoform 1 [Ovis aries]
Length = 530
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 236
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 297 TFSDSECAKKALEQLNGFELTGRPMKVGHVTERTDASSASSFLDSDEL 344
>gi|355715684|gb|AES05403.1| RNA binding motif protein 39 [Mustela putorius furo]
Length = 271
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 74 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 116
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 117 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 176
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 177 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 224
>gi|442761059|gb|JAA72688.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Ixodes ricinus]
Length = 235
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 71/160 (44%), Gaps = 24/160 (15%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPN------ 275
K A+VE + VE AM L+G G+ + V+ P Q N
Sbjct: 84 KGIAYVEFQDVESVPLAMGLNGQKLFGIPIVVQ--------------PTQAERNRAAAQS 129
Query: 276 LNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNS 335
+ ++ L G IG P R++VG L + TE +K + E FG + +L+KD +T S
Sbjct: 130 ASTSSSTLQRGNIG----PMRLYVGSLHFNITEDMLKGIFEPFGKIDKIELIKDMETNRS 185
Query: 336 KGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
KGYGF + D A LNG ++ + + V T +
Sbjct: 186 KGYGFITFHDSEDAKKALEQLNGFELAGRPMKVGHVTERT 225
>gi|184185564|gb|ACC68962.1| RNA binding motif protein 39 isoform a (predicted) [Rhinolophus
ferrumequinum]
Length = 498
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 236
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
+ D A LNG ++ + + V R ASS S
Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 337
>gi|145538137|ref|XP_001454774.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422551|emb|CAK87377.1| unnamed protein product [Paramecium tetraurelia]
Length = 426
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIF-EGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
K + +E + E + D + F ++V RP + L L P LN
Sbjct: 132 KSWVVLECSSKEAKRALVTQDQVQFVNNCKIKVERPRKF---LERILNPQARDGELNPEQ 188
Query: 281 VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD--RDTGNSKGY 338
E R+++GGLP Y + + +L++SFG F+LVKD +T SKGY
Sbjct: 189 ---------KQEDNTRLYLGGLPTYLRDEDVMKLIQSFGITKYFNLVKDTTSNTEISKGY 239
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSK 379
F Y+ T A ALN L++GD+ L + + + Q+K
Sbjct: 240 CFFEYESAQSTAKALKALNNLQIGDRKLKICKVQGETQQNK 280
>gi|68448493|ref|NP_001020337.1| RNA-binding motif protein, X-linked 2 [Danio rerio]
gi|67678309|gb|AAH96985.1| RNA binding motif protein, X-linked 2 [Danio rerio]
Length = 434
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VF+GG PY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 38 VFIGGFPYELTEGDIICVFSQYGEIANINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 98 NGIKIKGRTIRV 109
>gi|260834973|ref|XP_002612484.1| hypothetical protein BRAFLDRAFT_214383 [Branchiostoma floridae]
gi|229297861|gb|EEN68493.1| hypothetical protein BRAFLDRAFT_214383 [Branchiostoma floridae]
Length = 466
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%)
Query: 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
G+ GP R++VG L + TE ++ + E FG + L+KD +TG SKGYGF + D
Sbjct: 139 GSSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLMKDSETGRSKGYGFITFHDAECA 198
Query: 350 DIACAALNGLKMGDKTLTVRRATASS 375
A LNG ++ + + V T S
Sbjct: 199 KKALEQLNGFELAGRPMKVGHVTERS 224
>gi|443898802|dbj|GAC76136.1| mRNA cleavage and polyadenylation factor I complex, subunit RNA15
[Pseudozyma antarctica T-34]
Length = 401
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 299 VGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG 358
VG +PY +E Q+ ++ G + GF LV DRDTG KGYGFC ++DP A LN
Sbjct: 14 VGNIPYDMSEEQLTDVFREVGKVVGFRLVNDRDTGKFKGYGFCEFEDPETAASAVRNLNE 73
Query: 359 LKMGDKTLTVRRA 371
+++G + L + A
Sbjct: 74 VEVGGRPLRISFA 86
>gi|48146631|emb|CAG33538.1| RNPC4 [Homo sapiens]
Length = 423
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 191 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 234
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYG
Sbjct: 235 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGLI 293
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 294 TFSDSECARRALEQLNGFELAGRPMRVGHVT 324
>gi|449265754|gb|EMC76900.1| RNA-binding protein 39, partial [Columba livia]
Length = 423
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 95 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 137
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 138 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 197
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 198 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 245
>gi|149745621|ref|XP_001500162.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Equus
caballus]
Length = 327
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N +G+A +E D +F+GGLPY TE I + +G + +LV+D+ T
Sbjct: 14 NEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 73
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 74 GKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRV 109
>gi|431908562|gb|ELK12156.1| RNA-binding motif protein, X-linked 2 [Pteropus alecto]
Length = 346
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N +G+A +E D +F+GGLPY TE I + +G + +LV+D+ T
Sbjct: 34 NEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 93
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 94 GKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRV 129
>gi|347964873|ref|XP_309173.5| AGAP000977-PA [Anopheles gambiae str. PEST]
gi|333466517|gb|EAA04971.6| AGAP000977-PA [Anopheles gambiae str. PEST]
Length = 163
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+FVGGLPY TE + + +G + +LV+D+ TG SKG+ F Y+D T +A L
Sbjct: 36 IFVGGLPYDLTEGDVLCVFSQYGEIVNVNLVRDKATGKSKGFAFICYEDQRSTVLAVDNL 95
Query: 357 NGLKMGDKTLTV 368
NG+K+ KTL V
Sbjct: 96 NGIKLVGKTLRV 107
>gi|67624203|ref|XP_668384.1| RNA-binding protein SiahBP [Cryptosporidium hominis TU502]
gi|54659576|gb|EAL38146.1| RNA-binding protein SiahBP [Cryptosporidium hominis]
Length = 615
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 93/226 (41%), Gaps = 41/226 (18%)
Query: 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI----NHEKKFAFVEMRT 231
R+YVG L NE + F S GP +VN+ + N K F F+E +
Sbjct: 213 RIYVGSLDYSLNEADLKQVFG---------SFGP---IVNIDMPREGNRSKGFCFIEYTS 260
Query: 232 VEEASNAMA-LDGIIFEGVAVRVRRPTD----------------------YNPTLAAALG 268
E A A+A ++ + +G +RV RPT+ NP +A
Sbjct: 261 QESAEMALATMNRFVLKGRPIRVGRPTNAASSNGNQSGSGGIGGGGSGNVINPNIAVFNN 320
Query: 269 PGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328
N + + I +R+++G +PY FT ++ + ++FG + L+
Sbjct: 321 NHITHQNHQIQSETTHGTGIA-THSQNRIYIGSVPYSFTTDDLRHIFKTFGVILSCQLIP 379
Query: 329 DRDT-GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
+ G +GYGF + +A +NG ++G K L V ATA
Sbjct: 380 SIEKPGTHRGYGFIEFGTADQAKLAIETMNGFEVGGKQLKVNVATA 425
>gi|426241406|ref|XP_004014582.1| PREDICTED: RNA-binding protein 39 isoform 3 [Ovis aries]
Length = 502
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 172 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 214
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 215 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 274
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
+ D A LNG ++ + + V R ASS S
Sbjct: 275 TFSDSECAKKALEQLNGFELTGRPMKVGHVTERTDASSASS 315
>gi|13278367|gb|AAH04000.1| Rbm39 protein [Mus musculus]
Length = 429
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A +A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYG
Sbjct: 134 AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG 193
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
F + D A LNG ++ + + V R ASS S + + +
Sbjct: 194 FITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 243
>gi|296236404|ref|XP_002763305.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Callithrix
jacchus]
Length = 342
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+F+GGLPY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 58 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 117
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 118 NGIKIKGRTIRV 129
>gi|148231281|ref|NP_001085808.1| RNA binding motif protein 23 [Xenopus laevis]
gi|49118375|gb|AAH73374.1| MGC80803 protein [Xenopus laevis]
Length = 416
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 65/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE + A+ L G GV + V+ LAA S NL
Sbjct: 194 KGIAYVEFCEIHSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAM------SNNLQ---- 243
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
G GP R++VG L + TE ++ + E FG + L+K+ DTG SKG+GF
Sbjct: 244 -------RGNFGPMRLYVGSLHFNITEEMLRGIFEPFGKIENIQLLKEPDTGRSKGFGFI 296
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ K + V T
Sbjct: 297 TFTDAECARRALEQLNGFELAGKPMKVGHVT 327
>gi|19114796|ref|NP_593884.1| RNA-binding protein (predicted) [Schizosaccharomyces pombe 972h-]
gi|74698319|sp|Q9P6P7.1|YKCG_SCHPO RecName: Full=Uncharacterized RNA-binding protein C644.16
gi|7708595|emb|CAB90143.1| RNA-binding protein (predicted) [Schizosaccharomyces pombe]
Length = 422
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
V+VG +PY E Q+ ++ + G + F LV D ++G KGYGFC Y DPA A L
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 357 NGLKMGDKTLTVRRATA 373
N G + L V TA
Sbjct: 67 NNYDAGTRRLRVDFPTA 83
>gi|403279255|ref|XP_003931175.1| PREDICTED: RNA-binding motif protein, X-linked 2 [Saimiri
boliviensis boliviensis]
Length = 342
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+F+GGLPY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 58 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 117
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 118 NGIKIKGRTIRV 129
>gi|109077776|ref|XP_001110036.1| PREDICTED: RNA-binding motif protein, X-linked 2 [Macaca mulatta]
Length = 322
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N +G+A +E D +F+GGLPY TE I + +G + +LV+D+ T
Sbjct: 14 NEEEVKLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 73
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 74 GKSKGFCFLCYEDQRSTILAVDNFNGIKVKGRTIRV 109
>gi|170058744|ref|XP_001865056.1| splicing factor [Culex quinquefasciatus]
gi|167877732|gb|EDS41115.1| splicing factor [Culex quinquefasciatus]
Length = 546
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 87/214 (40%), Gaps = 29/214 (13%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
P++ ++ + R R V+ L + + FFS V G V + N
Sbjct: 179 PLEELSPE-ERDMRTVFCMQLSQRIRARDLEEFFSSV---------GKVRDVRLITCNKT 228
Query: 222 KKF---AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
K+F A++E R E + A+ L G G+ + V+ LA N+
Sbjct: 229 KRFKGIAYIEFRDPESVALALGLSGQRLLGIPISVQHTQAEKNRLA------------NI 276
Query: 279 AAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
+G P R++VG L + TE ++ + E FG + L+ D DTG SKGY
Sbjct: 277 PPPPPPKVIVG----PMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDSDTGRSKGY 332
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
GF + + A LNG ++ + + V T
Sbjct: 333 GFITFHNADDAKKALEQLNGFELAGRPMKVGNVT 366
>gi|426241408|ref|XP_004014583.1| PREDICTED: RNA-binding protein 39 isoform 4 [Ovis aries]
Length = 508
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A +A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYG
Sbjct: 213 AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG 272
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
F + D A LNG ++ + + V R ASS S
Sbjct: 273 FITFSDSECAKKALEQLNGFELTGRPMKVGHVTERTDASSASS 315
>gi|348552954|ref|XP_003462292.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Cavia
porcellus]
Length = 388
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N +G+A +E D +F+GGLPY TE + + +G + +LV+D+ T
Sbjct: 66 NEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDVICVFSQYGEIVNINLVRDKKT 125
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 126 GKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRV 161
>gi|50417226|gb|AAH78245.1| Rbmx2 protein [Danio rerio]
Length = 358
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VF+GG PY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 38 VFIGGFPYELTEGDIICVFSQYGEIANINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 98 NGIKIKGRTIRV 109
>gi|444517993|gb|ELV11894.1| RNA-binding motif protein, X-linked 2, partial [Tupaia chinensis]
Length = 323
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N +G+A +E D +F+GGLPY TE I + +G + +LV+D+ T
Sbjct: 11 NEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEVVNINLVRDKKT 70
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 71 GKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRV 106
>gi|380025295|ref|XP_003696412.1| PREDICTED: RNA-binding motif protein, X-linked 2-like, partial
[Apis florea]
Length = 135
Score = 65.5 bits (158), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+F+GGLPY TE + + FG + +L++D+DTG KGYGF Y+D T +A
Sbjct: 33 IFIGGLPYDLTEGDVITVFSQFGEVVNINLIRDKDTGKQKGYGFLCYEDQRSTILAVDNF 92
Query: 357 NGLKMGDKTLTV 368
NG K+ +T+ V
Sbjct: 93 NGTKILGRTIRV 104
>gi|410055060|ref|XP_003953766.1| PREDICTED: uncharacterized protein LOC458443 [Pan troglodytes]
gi|426391517|ref|XP_004062119.1| PREDICTED: RNA-binding protein 39 isoform 6 [Gorilla gorilla
gorilla]
gi|20988961|gb|AAH30493.1| Rbm39 protein [Mus musculus]
gi|34364789|emb|CAE45833.1| hypothetical protein [Homo sapiens]
gi|111598490|gb|AAH82607.1| Rbm39 protein [Mus musculus]
gi|119596570|gb|EAW76164.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_d [Homo
sapiens]
gi|149030835|gb|EDL85862.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_g [Rattus
norvegicus]
Length = 367
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 72/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V+ Q N A
Sbjct: 37 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQ--------------ASQAEKN---RAA 79
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 80 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 139
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 140 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 187
>gi|19113461|ref|NP_596669.1| mRNA cleavage and polyadenylation specificity factor complex
subunit Ctf1 [Schizosaccharomyces pombe 972h-]
gi|15213955|sp|O43040.1|CTF1_SCHPO RecName: Full=Cleavage and termination factor 1; AltName:
Full=Transcription termination factor ctf1
gi|2950477|emb|CAA17791.1| mRNA cleavage and polyadenylation specificity factor complex
subunit Ctf1 [Schizosaccharomyces pombe]
Length = 363
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY +E Q+ E+ G + F LV D +TG+ KGYGFC + D T +A L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 357 NGLKMGDKTLTVR 369
N ++G + + V
Sbjct: 69 NNSELGPRKIRVE 81
>gi|395835423|ref|XP_003790679.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Otolemur
garnettii]
Length = 331
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N +G+A +E D +F+GGLPY TE I + +G + +LV+D+ T
Sbjct: 14 NEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 73
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 74 GKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRV 109
>gi|375268714|ref|NP_001243518.1| RNA binding motif protein, X-linked 2 [Bos taurus]
gi|296471256|tpg|DAA13371.1| TPA: RNA binding motif protein, X-linked 2-like protein [Bos
taurus]
Length = 358
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+F+GGLPY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 58 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 117
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 118 NGIKIKGRTIRV 129
>gi|71896483|ref|NP_001025497.1| ELAV-like protein 3 [Xenopus (Silurana) tropicalis]
gi|123913100|sp|Q28FX0.1|ELAV3_XENTR RecName: Full=ELAV-like protein 3; AltName: Full=Protein ElrC
gi|89266725|emb|CAJ83874.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C) [Xenopus (Silurana) tropicalis]
Length = 343
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 280 AVGLASGAIGGAE-GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
+VG+ +G G A+ + V LP T+ + K L S G + LV+D+ TG S GY
Sbjct: 19 SVGILNGTNGAADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGY 78
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
GF Y DP D A LNGLK+ KT+ V A SS
Sbjct: 79 GFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSS 115
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 90/221 (40%), Gaps = 29/221 (13%)
Query: 177 VYVGGLPPLANEQAIATFFSQ---VMTA-------IGGNSAGPG----DAVVNVY----- 217
+YV LP N++ + FSQ ++T+ G S G G D +
Sbjct: 123 LYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKG 182
Query: 218 INHEKKFAFVEMRTVEEASN-----AMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP 272
+N +K E TV+ A+N AL +++ A R P ++ T P
Sbjct: 183 LNGQKPLGASEPITVKFANNPSQKTGQALLTHLYQTTARRYTGPL-HHQTQRFRFSPITI 241
Query: 273 SPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
NLA V L G +FV L E+ + +L FG + +++D T
Sbjct: 242 DSVTNLAGVSLTGPTTAGW----CIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTT 297
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
KG+GF + +A A+LNG ++GD+ L V T+
Sbjct: 298 NKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTS 338
>gi|402587151|gb|EJW81087.1| hypothetical protein WUBG_08006 [Wuchereria bancrofti]
Length = 334
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 40/75 (53%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG + Y E Q+K++ G + LV DRDTG KGYGFC Y D + A L
Sbjct: 28 VFVGNISYEVGEEQLKQVFSQVGAVVHLRLVHDRDTGKPKGYGFCEYNDAQTAESAIRNL 87
Query: 357 NGLKMGDKTLTVRRA 371
NG ++ + L V A
Sbjct: 88 NGFELNGRPLRVDSA 102
>gi|395545903|ref|XP_003775408.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding motif protein, X-linked
2 [Sarcophilus harrisii]
Length = 310
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VF+GGLPY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 19 VFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 78
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 79 NGIKIRGRTIRV 90
>gi|312379149|gb|EFR25518.1| hypothetical protein AND_09071 [Anopheles darlingi]
Length = 232
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+FVGGLPY TE + + +G + +LV+D+ +G SKG+ F Y+D T +A L
Sbjct: 96 IFVGGLPYDLTEGDVICVFSQYGEIVNINLVRDKTSGKSKGFCFICYEDQRSTVLAVDNL 155
Query: 357 NGLKMGDKTLTV 368
NG+K+ KTL V
Sbjct: 156 NGIKLVGKTLRV 167
>gi|134026264|gb|AAI36135.1| ELAV (embryonic lethal, abnormal vision)-like 3 (Hu antigen C)
[Xenopus (Silurana) tropicalis]
Length = 342
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 280 AVGLASGAIGGAE-GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
+VG+ +G G A+ + V LP T+ + K L S G + LV+D+ TG S GY
Sbjct: 19 SVGILNGTNGAADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGY 78
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
GF Y DP D A LNGLK+ KT+ V A SS
Sbjct: 79 GFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSS 115
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 177 VYVGGLPPLANEQAIATFFSQ---VMTA------IGGNSAGPG----DAVVNVY-----I 218
+YV LP N++ + FSQ ++T+ + G S G G D + +
Sbjct: 123 LYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 182
Query: 219 NHEKKFAFVEMRTVEEASN-----AMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPS 273
N +K E TV+ A+N AL +++ A R P ++ T P
Sbjct: 183 NGQKPLGASEPITVKFANNPSQKTGQALLTHLYQTTARRYTGPL-HHQTQRFRFSPITID 241
Query: 274 PNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG 333
NLA V L G +FV L E+ + +L FG + +++D T
Sbjct: 242 SVTNLAGVSLTGPTTAGW----CIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTN 297
Query: 334 NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
KG+GF + +A A+LNG ++GD+ L V T+
Sbjct: 298 KCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTS 337
>gi|12230585|sp|Q08937.1|ROC2_NICSY RecName: Full=29 kDa ribonucleoprotein B, chloroplastic; AltName:
Full=CP29B; Flags: Precursor
gi|14135|emb|CAA43428.1| 29kD B ribonucleoprotein [Nicotiana sylvestris]
Length = 291
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 95/219 (43%), Gaps = 20/219 (9%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---IN 219
V+V Q +++VG LP + A+A F + AG + V +Y
Sbjct: 75 VEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFER---------AGNVEMVEVIYDKLTG 125
Query: 220 HEKKFAFVEMRTVEEASNA-MALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
+ F FV M T EE A +G +G A+RV ++ G G+ N +
Sbjct: 126 RSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGG-NSSY 184
Query: 279 AAVGLASGAIGGAEG------PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
+ + GGA G +RV+VG L + + +KEL G + +V DRD+
Sbjct: 185 GGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDS 244
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
G S+G+GF Y + A +LNG+ + +++ V A
Sbjct: 245 GRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAA 283
>gi|170574206|ref|XP_001892710.1| cleavage stimulation factor [Brugia malayi]
gi|158601568|gb|EDP38456.1| cleavage stimulation factor, putative [Brugia malayi]
Length = 334
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 40/75 (53%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG + Y E Q+K++ G + LV DRDTG KGYGFC Y D + A L
Sbjct: 28 VFVGNISYEVGEEQLKQVFSQVGAVVHLRLVHDRDTGKPKGYGFCEYNDSQTAESAIRNL 87
Query: 357 NGLKMGDKTLTVRRA 371
NG ++ + L V A
Sbjct: 88 NGFELNGRPLRVDSA 102
>gi|66362264|ref|XP_628096.1| Ro ribonucleoprotein-binding protein 1, RNA binding protein with 3x
RRM domains [Cryptosporidium parvum Iowa II]
gi|46227417|gb|EAK88352.1| Ro ribonucleoprotein-binding protein 1, RNA binding protein with 3x
RRM domains [Cryptosporidium parvum Iowa II]
gi|323508937|dbj|BAJ77361.1| cgd1_2730 [Cryptosporidium parvum]
gi|323510323|dbj|BAJ78055.1| cgd1_2730 [Cryptosporidium parvum]
Length = 693
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 93/226 (41%), Gaps = 41/226 (18%)
Query: 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI----NHEKKFAFVEMRT 231
R+YVG L NE + F S GP +VN+ + N K F F+E +
Sbjct: 291 RIYVGSLDYSLNEADLKQVFG---------SFGP---IVNIDMPREGNRSKGFCFIEYTS 338
Query: 232 VEEASNAMA-LDGIIFEGVAVRVRRPTD----------------------YNPTLAAALG 268
E A A+A ++ + +G +RV RPT+ NP +A
Sbjct: 339 QESAEMALATMNRFVLKGRPIRVGRPTNAASSNGNQSGSGGIGGGGSGNVINPNIAVFNN 398
Query: 269 PGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328
N + + I +R+++G +PY FT ++ + ++FG + L+
Sbjct: 399 NHITHQNHQIQSETTHGTGIA-THSQNRIYIGSVPYSFTTDDLRHIFKTFGVILSCQLIP 457
Query: 329 DRDT-GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
+ G +GYGF + +A +NG ++G K L V ATA
Sbjct: 458 SIEKPGTHRGYGFIEFGTADQAKLAIETMNGFEVGGKQLKVNVATA 503
>gi|321472566|gb|EFX83536.1| hypothetical protein DAPPUDRAFT_194972 [Daphnia pulex]
Length = 366
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 83/204 (40%), Gaps = 25/204 (12%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF---AFVE 228
R AR V+ L + + FFS V G V + N ++F +VE
Sbjct: 6 RDARTVFCMQLSQRIRARDLEEFFSAV---------GKVRDVRLITCNKTRRFKGLCYVE 56
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
E A+AL G GV + V+ LA + P S N
Sbjct: 57 FAEPESVPLAIALTGQRLCGVPIVVQPTQAEKNRLAGSNMPAMSSFN------------- 103
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
G GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF +++
Sbjct: 104 KGPNGPMRLYVGSLHFNITEDMLRSIFEPFGKIEHMQLMIDTETGRSKGYGFITFRNAED 163
Query: 349 TDIACAALNGLKMGDKTLTVRRAT 372
A LNG ++ + + + T
Sbjct: 164 AKKAMEQLNGFELAGRPMKINHVT 187
>gi|182888560|ref|NP_001107258.2| RNA-binding motif protein, X-linked 2 [Rattus norvegicus]
gi|374253659|sp|B0BN49.1|RBMX2_RAT RecName: Full=RNA-binding motif protein, X-linked 2
gi|165970686|gb|AAI58685.1| Rbmx2 protein [Rattus norvegicus]
Length = 328
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N +G+A +E D +F+GGLPY TE I + +G + +LV+D+ T
Sbjct: 14 NEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 73
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 74 GKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRV 109
>gi|397623851|gb|EJK67169.1| hypothetical protein THAOC_11833 [Thalassiosira oceanica]
Length = 436
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 12/153 (7%)
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
T+ +R ++VG PP +E + F S M+ + + P D V KF F+E+
Sbjct: 66 TKLSRELFVGNTPPGTSEALLMQFLSGAMSRV---NLCPPDVTPIVTCRKNDKFCFIELA 122
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYN----PTLAAALGPGQPSPNLNLAAVGLASG 286
TV+ A+ A+ L+GI F G ++RV RP+ Y+ P+ GQP P +AAV +G
Sbjct: 123 TVDLANKALNLNGIPFLGSSLRVARPSKYSGPHVPSQTWQQLTGQPLPP-GMAAVPENTG 181
Query: 287 AIGGAEGPDR----VFVGGLPYYFTETQIKELL 315
G D+ +F+G T +++ L
Sbjct: 182 VTMALSGEDKLSRELFIGNTTPEMTAEMLRDFL 214
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRT 231
+ +R +++G P + + F + M +G S PG+ +V V KFAF+E+R+
Sbjct: 191 KLSRELFIGNTTPEMTAEMLRDFLGRAMEQVGL-STMPGNPIVTV--RPSAKFAFIEVRS 247
Query: 232 VEEASNAMALDGIIFEGVAVRVRRPTDYN 260
++EA+NA+ L+ I + G +RV RP+ Y+
Sbjct: 248 MQEAANALNLNNIPYLGAQLRVGRPSKYS 276
>gi|426397384|ref|XP_004064898.1| PREDICTED: RNA-binding motif protein, X-linked 2 [Gorilla gorilla
gorilla]
Length = 322
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N +G+A +E D +F+GGLPY TE I + +G + +LV+D+ T
Sbjct: 14 NEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 73
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 74 GKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRV 109
>gi|297839015|ref|XP_002887389.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297333230|gb|EFH63648.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 460
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 44/84 (52%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q++E+ G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 10 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 69
Query: 357 NGLKMGDKTLTVRRATASSGQSKT 380
++ + L V A G KT
Sbjct: 70 QSYEINGRQLRVDFAENDKGTDKT 93
>gi|34365067|emb|CAE45890.1| hypothetical protein [Homo sapiens]
Length = 373
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 72/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V+ Q N A
Sbjct: 37 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIVVQ--------------ASQAEKN---RAA 79
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 80 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 139
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 140 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 187
>gi|327284806|ref|XP_003227126.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Anolis
carolinensis]
Length = 287
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVGGLPY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 38 VFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFICYEDQRSTILAVDNF 97
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 98 NGIKIKGRTIRV 109
>gi|355750033|gb|EHH54371.1| hypothetical protein EGM_15194 [Macaca fascicularis]
Length = 310
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N +G+A +E D +F+GGLPY TE I + +G + +LV+D+ T
Sbjct: 14 NEEEVKLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 73
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 74 GKSKGFCFLCYEDQRSTILAVDNFNGIKVKGRTIRV 109
>gi|345328415|ref|XP_001513073.2| PREDICTED: cleavage stimulation factor subunit 2-like
[Ornithorhynchus anatinus]
Length = 1036
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 299 VGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG 358
+G +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A LNG
Sbjct: 456 LGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG 515
Query: 359 LKMGDKTLTVRRATASSGQSKTEQESI 385
+ + L V A+S ++K E +S+
Sbjct: 516 REFSGRALRVD--NAASEKNKEELKSL 540
>gi|410212532|gb|JAA03485.1| RNA binding motif protein, X-linked 2 [Pan troglodytes]
gi|410251714|gb|JAA13824.1| RNA binding motif protein, X-linked 2 [Pan troglodytes]
gi|410308778|gb|JAA32989.1| RNA binding motif protein, X-linked 2 [Pan troglodytes]
gi|410333627|gb|JAA35760.1| RNA binding motif protein, X-linked 2 [Pan troglodytes]
Length = 322
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N +G+A +E D +F+GGLPY TE I + +G + +LV+D+ T
Sbjct: 14 NEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 73
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 74 GKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRV 109
>gi|332226384|ref|XP_003262369.1| PREDICTED: RNA-binding motif protein, X-linked 2 [Nomascus
leucogenys]
Length = 322
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N +G+A +E D +F+GGLPY TE I + +G + +LV+D+ T
Sbjct: 14 NEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 73
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 74 GKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRV 109
>gi|118600973|ref|NP_057108.2| RNA-binding motif protein, X-linked 2 [Homo sapiens]
gi|62512110|sp|Q9Y388.2|RBMX2_HUMAN RecName: Full=RNA-binding motif protein, X-linked 2
gi|4938275|emb|CAB43745.1| hypothetical protein [Homo sapiens]
gi|62020769|gb|AAH33750.1| RNA binding motif protein, X-linked 2 [Homo sapiens]
gi|119632205|gb|EAX11800.1| RNA binding motif protein, X-linked 2, isoform CRA_b [Homo sapiens]
gi|158259171|dbj|BAF85544.1| unnamed protein product [Homo sapiens]
Length = 322
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N +G+A +E D +F+GGLPY TE I + +G + +LV+D+ T
Sbjct: 14 NEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 73
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 74 GKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRV 109
>gi|393903982|gb|EFO15894.2| cleavage stimulation factor [Loa loa]
Length = 337
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 40/75 (53%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG + Y E Q+K++ G + LV DRDTG KGYGFC Y D + A L
Sbjct: 28 VFVGNISYEVGEEQLKQVFAQVGPVVHLRLVHDRDTGKPKGYGFCEYNDAQTAESAIRNL 87
Query: 357 NGLKMGDKTLTVRRA 371
NG ++ + L V A
Sbjct: 88 NGFELNGRPLRVDSA 102
>gi|312094880|ref|XP_003148175.1| cleavage stimulation factor [Loa loa]
Length = 334
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 40/75 (53%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG + Y E Q+K++ G + LV DRDTG KGYGFC Y D + A L
Sbjct: 28 VFVGNISYEVGEEQLKQVFAQVGPVVHLRLVHDRDTGKPKGYGFCEYNDAQTAESAIRNL 87
Query: 357 NGLKMGDKTLTVRRA 371
NG ++ + L V A
Sbjct: 88 NGFELNGRPLRVDSA 102
>gi|440802763|gb|ELR23692.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 425
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 27/203 (13%)
Query: 178 YVGGLPPLANEQAIATFF-SQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEAS 236
++G LP A E + FF SQ ++A+ + + +K F ++E + +
Sbjct: 183 FIGNLPWSAEEDTVKQFFESQGVSAVYAVRL-----ITDRDTGRKKGFGYIET-SASDVD 236
Query: 237 NAMALDGIIFEGVAVRV----RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAE 292
+AL+G FEG ++V RP + + P Q G A
Sbjct: 237 AVLALNGADFEGRELKVDKANERPANADRDTKPRDAPRQS----------------GEAA 280
Query: 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIA 352
VF+G L + TE I LE FGT+ +V DR+T +G+G+C ++D + A
Sbjct: 281 TDGNVFLGNLSFNSTEDSIWAALEQFGTVKAVRIVYDRETQRPRGFGYCEFEDADTANKA 340
Query: 353 CAALNGLKMGDKTLTVRRATASS 375
AA + + + + + ATA S
Sbjct: 341 IAASGTVDVDGRQIRIDTATARS 363
>gi|410055058|ref|XP_003316934.2| PREDICTED: uncharacterized protein LOC458443 isoform 4 [Pan
troglodytes]
gi|410055062|ref|XP_003953767.1| PREDICTED: uncharacterized protein LOC458443 [Pan troglodytes]
gi|426391515|ref|XP_004062118.1| PREDICTED: RNA-binding protein 39 isoform 5 [Gorilla gorilla
gorilla]
gi|426391519|ref|XP_004062120.1| PREDICTED: RNA-binding protein 39 isoform 7 [Gorilla gorilla
gorilla]
gi|119596566|gb|EAW76160.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_b [Homo
sapiens]
gi|119596571|gb|EAW76165.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_b [Homo
sapiens]
Length = 373
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A +A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYG
Sbjct: 78 AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG 137
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
F + D A LNG ++ + + V R ASS S + + +
Sbjct: 138 FITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 187
>gi|119632204|gb|EAX11799.1| RNA binding motif protein, X-linked 2, isoform CRA_a [Homo sapiens]
Length = 321
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N +G+A +E D +F+GGLPY TE I + +G + +LV+D+ T
Sbjct: 13 NEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 72
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 73 GKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRV 108
>gi|402911397|ref|XP_003919621.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding motif protein, X-linked
2 [Papio anubis]
Length = 322
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N +G+A +E D +F+GGLPY TE I + +G + +LV+D+ T
Sbjct: 14 NEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 73
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 74 GKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRV 109
>gi|388453455|ref|NP_001253777.1| RNA-binding motif protein, X-linked 2 [Macaca mulatta]
gi|380813648|gb|AFE78698.1| RNA-binding motif protein, X-linked 2 [Macaca mulatta]
gi|383419077|gb|AFH32752.1| RNA-binding motif protein, X-linked 2 [Macaca mulatta]
gi|384947606|gb|AFI37408.1| RNA-binding motif protein, X-linked 2 [Macaca mulatta]
Length = 322
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N +G+A +E D +F+GGLPY TE I + +G + +LV+D+ T
Sbjct: 14 NEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 73
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 74 GKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRV 109
>gi|170095009|ref|XP_001878725.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646029|gb|EDR10275.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 332
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY E Q+ ++ +S G + GF L DRDTG KGYGFC + D A L
Sbjct: 7 VFVGNVPYNMAEDQLIDVFKSVGQVIGFRLSYDRDTGKPKGYGFCEFADHETAMSAVRNL 66
Query: 357 NGLKMGDKTLTVRRA 371
NG+ +G + L + A
Sbjct: 67 NGVDVGGRPLRIDLA 81
>gi|383847795|ref|XP_003699538.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Megachile
rotundata]
Length = 139
Score = 65.1 bits (157), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+F+GGLPY TE + + +G + +L++D+DTG KGYGF Y+D T +A
Sbjct: 36 IFIGGLPYDLTEGDVVTIFSQYGEVVNINLIRDKDTGKQKGYGFLCYEDQRSTILAVDNF 95
Query: 357 NGLKMGDKTLTV 368
NG K+ +T+ V
Sbjct: 96 NGTKILGRTIRV 107
>gi|410931844|ref|XP_003979305.1| PREDICTED: RNA-binding protein 39-like, partial [Takifugu rubripes]
Length = 324
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%)
Query: 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
G GP R++VG L + TE ++ + E FG + L+ D DTG SKGYGF + D
Sbjct: 137 GMMGPLRLYVGSLHFNITEEMLRGIFEPFGRIENIQLMMDTDTGRSKGYGFITFADAECA 196
Query: 350 DIACAALNGLKMGDKTLTVRRATASSGQS 378
A LNG ++ + + V T S S
Sbjct: 197 KKALEQLNGFELAGRPMKVGHVTERSDSS 225
>gi|126277401|ref|XP_001369188.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Monodelphis
domestica]
Length = 415
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 183 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 226
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+KD DTG SKG+GF
Sbjct: 227 -MANNLQKGSGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDPDTGRSKGFGFL 285
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 286 TFSDSECARRALEQLNGFELAGRPMRVGHVT 316
>gi|31873732|emb|CAD97833.1| hypothetical protein [Homo sapiens]
Length = 373
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 69/161 (42%), Gaps = 21/161 (13%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V+ Q N A
Sbjct: 37 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQ--------------ASQAEKN---RAA 79
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 80 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 139
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
+ D A LNG ++ + + V R ASS S
Sbjct: 140 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 180
>gi|126324405|ref|XP_001377748.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Monodelphis
domestica]
Length = 171
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 279 AAVGLASGAIGGAEGPD--RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSK 336
+G+A AE D VFVGGLPY TE I + +G + +LV+D+ TG SK
Sbjct: 18 VELGVAEKVSWHAEYKDSAWVFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSK 77
Query: 337 GYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G+ F Y+D T +A NG+K+ +T+ V
Sbjct: 78 GFCFLCYEDQRSTILAVDNFNGIKIRGRTIRV 109
>gi|389746164|gb|EIM87344.1| hypothetical protein STEHIDRAFT_78229, partial [Stereum hirsutum
FP-91666 SS1]
Length = 244
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY E Q+ ++ +S G + GF LV DRDTG KGYGFC + D A L
Sbjct: 5 VFVGNVPYNMGEEQLIDVFKSVGQVIGFRLVYDRDTGKPKGYGFCEFGDHETAQSAVRNL 64
Query: 357 NGLKMGDKTLTVRRA 371
N + +G + L + A
Sbjct: 65 NNVDVGGRPLRIDLA 79
>gi|345787182|ref|XP_542056.3| PREDICTED: ELAV-like protein 3 [Canis lupus familiaris]
Length = 647
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+ V LP T+ + K L S G + LV+D+ TG S GYGF Y DP D A L
Sbjct: 328 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 387
Query: 357 NGLKMGDKTLTVRRATASSGQ---------------SKTEQESILAQAQQHIAIQKMALQ 401
NGLK+ KT+ V A SS S+ E E + +Q + I + + Q
Sbjct: 388 NGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQ 447
Query: 402 TSGMN 406
+G++
Sbjct: 448 VTGVS 452
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+FV L E+ + +L FG + +++D T KG+GF + +A A+L
Sbjct: 566 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 625
Query: 357 NGLKMGDKTLTVRRATA 373
NG ++G++ L V T+
Sbjct: 626 NGYRLGERVLQVSFKTS 642
>gi|356535727|ref|XP_003536395.1| PREDICTED: uncharacterized protein LOC100794399 [Glycine max]
Length = 545
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+ E+ + G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQE 383
G ++ + L V A G + ++
Sbjct: 71 QGYEINGRQLRVDFAENDKGNDRNREQ 97
>gi|209154564|gb|ACI33514.1| RNA-binding protein 39 [Salmo salar]
Length = 525
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A +A+ G GP R++VG L + TE ++ + E FG + L+ D +TG SKGYG
Sbjct: 234 AAAMANNLQKGNAGPMRLYVGSLHFNITEEMLRGIFEPFGKIESIQLMMDSETGRSKGYG 293
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
F + D A LNG ++ + + V R AS+ S + + +
Sbjct: 294 FITFSDTECAKKALDQLNGFELAGRPMKVGHVTERTDASTASSFLDSDEL 343
>gi|170071297|ref|XP_001869868.1| splicing factor [Culex quinquefasciatus]
gi|167867202|gb|EDS30585.1| splicing factor [Culex quinquefasciatus]
Length = 524
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 81/204 (39%), Gaps = 28/204 (13%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF---AFVE 228
R R V+ L + + FFS V G V + N K+F A++E
Sbjct: 166 RDMRTVFCMQLSQRIRARDLEEFFSSV---------GKVRDVRLITCNKTKRFKGIAYIE 216
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
R E + A+ L G G+ + V+ LA N+ +
Sbjct: 217 FRDPESVALALGLSGQRLLGIPISVQHTQAEKNRLA------------NIPPPPPPKVIV 264
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
G P R++VG L + TE ++ + E FG + L+ D DTG SKGYGF + +
Sbjct: 265 G----PMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLIMDSDTGRSKGYGFITFHNADD 320
Query: 349 TDIACAALNGLKMGDKTLTVRRAT 372
A LNG ++ + + V T
Sbjct: 321 AKKALEQLNGFELAGRPMKVGNVT 344
>gi|221041852|dbj|BAH12603.1| unnamed protein product [Homo sapiens]
Length = 337
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A +A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYG
Sbjct: 78 AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG 137
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
F + D A LNG ++ + + V R ASS S
Sbjct: 138 FITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 180
>gi|356574567|ref|XP_003555417.1| PREDICTED: uncharacterized protein LOC100806489 [Glycine max]
Length = 544
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+ E+ + G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQE 383
G ++ + L V A G + ++
Sbjct: 71 QGYEINGRQLRVDFAENDKGNDRNREQ 97
>gi|426241414|ref|XP_004014586.1| PREDICTED: RNA-binding protein 39 isoform 7 [Ovis aries]
Length = 367
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 72/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V+ Q N A
Sbjct: 37 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQ--------------ASQAEKN---RAA 79
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 80 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 139
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 140 TFSDSECAKKALEQLNGFELTGRPMKVGHVTERTDASSASSFLDSDEL 187
>gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP31; Flags: Precursor
gi|19710|emb|CAA46233.1| RNA binding protein 31 [Nicotiana plumbaginifolia]
Length = 292
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 95/219 (43%), Gaps = 20/219 (9%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---IN 219
V+V Q +++VG LP + A+A F + AG + V +Y
Sbjct: 76 VEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFER---------AGNVEIVEVIYDKLSG 126
Query: 220 HEKKFAFVEMRTVEEASNA-MALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
+ F FV M T EE A +G +G A+RV ++ G G+ N +
Sbjct: 127 RSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGG-NSSY 185
Query: 279 AAVGLASGAIGGAEG------PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
+ + GGA G +RV+VG L + + +KEL G + +V DRD+
Sbjct: 186 GGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDS 245
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
G S+G+GF Y + A +LNG+ + +++ V A
Sbjct: 246 GRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAA 284
>gi|62857615|ref|NP_001016788.1| RNA binding motif protein 39 [Xenopus (Silurana) tropicalis]
gi|62201342|gb|AAH93451.1| RNA binding motif protein 39 [Xenopus (Silurana) tropicalis]
gi|89273890|emb|CAJ83908.1| RNA-binding region (RNP1, RRM) containing 2 [Xenopus (Silurana)
tropicalis]
Length = 542
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A +A+ G GP R++VG L + TE ++ + E FG + L+ D +TG SKGYG
Sbjct: 236 AAAMANNLQKGTAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG 295
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
F + D A LNG ++ + + V T
Sbjct: 296 FITFSDSECAKKALEQLNGFELAGRPMKVGHVT 328
>gi|291245050|ref|XP_002742404.1| PREDICTED: MGC81970 protein-like isoform 1 [Saccoglossus
kowalevskii]
Length = 556
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%)
Query: 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
G GP R++VG L + TE ++ + E FG + L+KD +TG SKGYGF + D
Sbjct: 251 GNSGPMRLYVGSLHFNITEEMLRGIFEPFGKIDNIQLMKDNETGRSKGYGFITFHDAEDA 310
Query: 350 DIACAALNGLKMGDKTLTVRRATASS 375
A LNG ++ + + V T S
Sbjct: 311 KKALEQLNGFELAGRPMKVGHVTERS 336
>gi|430812117|emb|CCJ30453.1| unnamed protein product [Pneumocystis jirovecii]
Length = 258
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY +E Q+K++ G ++ F LV D++T KGYGFC Y D A A L
Sbjct: 10 VFVGNIPYDVSEEQLKDIFRQIGPINRFRLVFDKETNKPKGYGFCEYPDVATASAAVRNL 69
Query: 357 NGLKMGDKTLTVRRATASSGQ 377
N + + L V A + Q
Sbjct: 70 NNHDINGRQLRVDFAESDPAQ 90
>gi|426258338|ref|XP_004022771.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Ovis aries]
Length = 461
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+F+GGLPY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 136 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 195
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 196 NGIKIKGRTIRV 207
>gi|359495190|ref|XP_002264617.2| PREDICTED: uncharacterized protein LOC100256296 [Vitis vinifera]
gi|297739347|emb|CBI29337.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+ ++ E G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 9 VFVGNIPYDATEEQLIQICEEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQE 383
G ++ + L V A G + ++
Sbjct: 69 QGYEINGRQLRVDFAENDKGADRNREQ 95
>gi|301624539|ref|XP_002941556.1| PREDICTED: RNA-binding protein 39 [Xenopus (Silurana) tropicalis]
Length = 420
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA S NL
Sbjct: 191 KGIAYVEFCDIQSVPLAIGLTGQRLLGVPIIVQVSQAEKNRLAAM------SNNLQ---- 240
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
G GP R++VG L + TE ++ + E FG + L+K+ DTG SKG+GF
Sbjct: 241 -------RGNPGPMRLYVGSLHFNITEDMLRGIFEPFGKIENIQLLKEPDTGRSKGFGFI 293
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 294 TFTDAECARRALEQLNGFELAGRPMKVGHVT 324
>gi|355757697|gb|EHH61222.1| RNA-binding motif protein, X-linked 2 [Macaca fascicularis]
Length = 334
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N +G+A +E D +F+GGLPY TE I + +G + +LV+D+ T
Sbjct: 26 NEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 85
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 86 GKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRV 121
>gi|395509895|ref|XP_003759222.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Sarcophilus
harrisii]
Length = 274
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 279 AAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSK 336
+GL AE D +F+GGLPY TE + + +G + +LV+D+ TG SK
Sbjct: 18 VELGLTENVSWHAEYKDSAWIFIGGLPYELTEGDVICVFSQYGEIVNINLVRDKKTGKSK 77
Query: 337 GYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G+ F Y+D T +A NG+K+ +T+ V
Sbjct: 78 GFCFLCYEDQRSTVLAVDNFNGIKIRGRTIRV 109
>gi|194901404|ref|XP_001980242.1| GG17034 [Drosophila erecta]
gi|190651945|gb|EDV49200.1| GG17034 [Drosophila erecta]
Length = 427
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 34/192 (17%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV--NVYINHEKKFAFV-- 227
H R+++VGGL + FFSQ + DAVV + NH + F FV
Sbjct: 29 EHLRKIFVGGLSTQTTMDTLREFFSQFGSV--------ADAVVMRDPITNHSRGFGFVTY 80
Query: 228 -EMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLN----LAAVG 282
+ +++E + R R T N A P P N + ++
Sbjct: 81 VDPKSIE---------------IVQRARPHTIDN--KAVETKPALPRHEFNRGGGVGSIL 123
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
G G +++F+GGL + E ++E FG + +L D+DTG +G+GF
Sbjct: 124 GGCGVGAGFVKSNKIFIGGLKDFHDEKTVREYFSQFGAVATMELFMDKDTGRKRGFGFLE 183
Query: 343 YQDPAVTDIACA 354
+QDP+ T+ A A
Sbjct: 184 FQDPSSTEKALA 195
>gi|5531845|gb|AAD44497.1| RNA-binding protein [Homo sapiens]
Length = 276
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+F+GGLPY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 98 NGIKIKGRTIRV 109
>gi|426241412|ref|XP_004014585.1| PREDICTED: RNA-binding protein 39 isoform 6 [Ovis aries]
gi|426241416|ref|XP_004014587.1| PREDICTED: RNA-binding protein 39 isoform 8 [Ovis aries]
Length = 373
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
A +A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYG
Sbjct: 78 AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYG 137
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
F + D A LNG ++ + + V R ASS S + + +
Sbjct: 138 FITFSDSECAKKALEQLNGFELTGRPMKVGHVTERTDASSASSFLDSDEL 187
>gi|357460829|ref|XP_003600696.1| Splicing factor 3B subunit [Medicago truncatula]
gi|355489744|gb|AES70947.1| Splicing factor 3B subunit [Medicago truncatula]
Length = 379
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 51/221 (23%)
Query: 178 YVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRT 231
YVG L P +E+ + F Q AGP VVNVY+ N + + FVE R+
Sbjct: 28 YVGNLDPQISEELLWELFVQ---------AGP---VVNVYVPKDRVTNQHQGYGFVEFRS 75
Query: 232 VEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
E+A A+ L+ I G +RV + + Q +L++ A
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRVNKAS-------------QDKKSLDVGA---------- 112
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTL-HGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
+F+G L E + + +FG + +++D DTGNS+G+GF Y +
Sbjct: 113 -----NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEAS 167
Query: 350 DIACAALNGLKMGDKTLTVRRATASSGQSK---TEQESILA 387
D A A+NG + ++ +TV A + + T E +LA
Sbjct: 168 DSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLA 208
>gi|297735183|emb|CBI17545.3| unnamed protein product [Vitis vinifera]
Length = 238
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 95/221 (42%), Gaps = 51/221 (23%)
Query: 178 YVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRT 231
YVG L P E+ + F Q AGP VVNVY+ N + + FVE R+
Sbjct: 28 YVGNLDPQVTEELLWELFVQ---------AGP---VVNVYVPKDRVTNLHQGYGFVEFRS 75
Query: 232 VEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
E+A A+ L+ I G +RV + + Q +L++ A
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRVNKAS-------------QDKKSLDVGA---------- 112
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTL-HGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
+FVG L E + + +FG + +++D DTGNS+G+GF Y +
Sbjct: 113 -----NLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEAS 167
Query: 350 DIACAALNGLKMGDKTLTVRRATASSGQSK---TEQESILA 387
D A A+NG + ++ +TV A + + T E +LA
Sbjct: 168 DAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLA 208
>gi|70954273|ref|XP_746191.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56526725|emb|CAH88205.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 686
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 27/196 (13%)
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEM 229
A + AR +YVG +P + Q I F + + + + I + ++AFVE
Sbjct: 249 AEKTARELYVGNIPQNIDIQEIVKFLNTCLLILYNKENENESICLKACIRGDTRYAFVEF 308
Query: 230 RTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIG 289
R++++ SN M L+GI F +R+ RP + + P P + L+ G IG
Sbjct: 309 RSLQDTSNCMLLNGIYFYSNNLRIGRPKTFPAEYTKLIPPATIPP---IDTYYLSQGLIG 365
Query: 290 GA------EGPDRVFVGGLPYYFTETQ---------------IKELLESFGTLHGFDLVK 328
+ D LP + Q IKELLE+FG + F+ +
Sbjct: 366 IKAFVIFHQNRDETKNEYLPVDMIKLQKLCVSNISKNNETNKIKELLEAFGEIQSFEFFE 425
Query: 329 DRDTGNSKGYGFCVYQ 344
+ NS Y C+ +
Sbjct: 426 GEE--NSDTY-ICLVE 438
>gi|378756227|gb|EHY66252.1| hypothetical protein NERG_00948 [Nematocida sp. 1 ERTm2]
Length = 211
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG + + E I E L S G + F +V DR TG SKGYGFC Y+ P V DIA L
Sbjct: 8 VFVGNIDFTVPEETIVEELSSVGRVISFRMVTDRATGKSKGYGFCTYESPIVADIAVNRL 67
Query: 357 NGLKMGDKTLTVRRATASSGQ 377
+ + ++ + + A +S Q
Sbjct: 68 K-IMLNNRPVKINYADNNSAQ 87
>gi|387593844|gb|EIJ88868.1| hypothetical protein NEQG_00687 [Nematocida parisii ERTm3]
gi|387595148|gb|EIJ92774.1| hypothetical protein NEPG_02465 [Nematocida parisii ERTm1]
Length = 211
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG + + E I E L S G + F +V DR TG SKGYGFC Y+ P V DI A+
Sbjct: 8 VFVGNIDFTIPEETIVEELSSVGRVISFRMVTDRATGKSKGYGFCTYESPIVADI---AV 64
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHI 393
N LK+ L R + + T Q+ + QA+ I
Sbjct: 65 NRLKI---MLNNRPVKINYADNNTVQQPQVEQAKLDI 98
>gi|405122146|gb|AFR96913.1| RNA-binding protein [Cryptococcus neoformans var. grubii H99]
Length = 508
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 46/72 (63%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
++VGGLP+ TE + + +G + +LV+D++TG S+G+GF +Y+D T +A +
Sbjct: 162 IYVGGLPFELTEGDLITIFSQWGEIMDVNLVRDKETGKSRGFGFLMYEDQRSTVLAVDNM 221
Query: 357 NGLKMGDKTLTV 368
NG ++ +TL V
Sbjct: 222 NGTQIIGRTLKV 233
>gi|344276873|ref|XP_003410230.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Loxodonta
africana]
Length = 303
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+F+GGLPY TE I + +G + +LV++R TG SKG+ F Y+D T +A
Sbjct: 38 IFLGGLPYELTEGDILCVFSQYGEIVNINLVRNRKTGKSKGFCFICYEDQRSTVLAVDNF 97
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 98 NGIKIKGRTIRV 109
>gi|213623456|gb|AAI69769.1| ElrC protein [Xenopus laevis]
Length = 341
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 280 AVGLASGAIGGAE-GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
VG+ +G G A+ + V LP T+ + K L S G + LV+D+ TG S GY
Sbjct: 18 CVGILNGTNGEADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGY 77
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
GF Y DP D A LNGLK+ KT+ V A SS
Sbjct: 78 GFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSS 114
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 177 VYVGGLPPLANEQAIATFFSQ---VMTA------IGGNSAGPG----DAVVNVY-----I 218
+YV LP N++ + FSQ ++T+ + G S G G D + +
Sbjct: 122 LYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 181
Query: 219 NHEKKFAFVEMRTVEEASN-----AMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPS 273
N +K E TV+ A+N AL +++ A R P ++ T P
Sbjct: 182 NGQKPLGASEPITVKFANNPSQKTGQALLTHLYQTTARRYTGPL-HHQTQRFRFSPITID 240
Query: 274 PNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG 333
NLA V L G +FV L E+ + +L FG + +++D T
Sbjct: 241 SVTNLAGVSLTGPTTAGW----CIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTN 296
Query: 334 NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
KG+GF + +A A+LNG ++GD+ L V T+
Sbjct: 297 KCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTS 336
>gi|148224170|ref|NP_001084080.1| ELAV-like protein 3 [Xenopus laevis]
gi|82245647|sp|Q91584.1|ELAV3_XENLA RecName: Full=ELAV-like protein 3; AltName: Full=Protein ElrC
gi|608541|gb|AAA96944.1| ribonucleoprotein [Xenopus laevis]
Length = 348
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 280 AVGLASGAIGGAE-GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
VG+ +G G A+ + V LP T+ + K L S G + LV+D+ TG S GY
Sbjct: 18 CVGILNGTNGEADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGY 77
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
GF Y DP D A LNGLK+ KT+ V A SS
Sbjct: 78 GFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSS 114
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 93/226 (41%), Gaps = 33/226 (14%)
Query: 177 VYVGGLPPLANEQAIATFFSQ---VMTA------IGGNSAGPG----DAVVNVY-----I 218
+YV LP N++ + FSQ ++T+ + G S G G D + +
Sbjct: 122 LYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 181
Query: 219 NHEKKFAFVEMRTVEEASN-----AMALDGIIFEGVAVRVRRPTD-----YNP-TLAAAL 267
N +K E TV+ A+N AL +++ A R P ++P ++
Sbjct: 182 NGQKPLGASEPITVKFANNPSQKTGQALLTHLYQTTARRYTGPLHHQTQRFSPLSILPRF 241
Query: 268 GPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLV 327
P NLA V L G +FV L E+ + +L FG + ++
Sbjct: 242 SPITIDSVTNLAGVSLTGPTTAGW----CIFVYNLSPEADESVLWQLFGPFGAVTNVKVI 297
Query: 328 KDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
+D T KG+GF + +A A+LNG ++GD+ L V T+
Sbjct: 298 RDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTS 343
>gi|357123042|ref|XP_003563222.1| PREDICTED: zinc finger CCCH domain-containing protein 25-like
[Brachypodium distachyon]
Length = 385
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N AA+GL+ A A+ D VFVGG+PY TE + + +G + +LV+D+ T
Sbjct: 14 NQKEAALGLSEDASWHAKFKDSAYVFVGGVPYDLTEGDLLAVFAQYGEVVDVNLVRDKAT 73
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T +A LNG K+ + + V
Sbjct: 74 GKSKGFAFVAYEDQRSTVLAVDNLNGAKVLGRIIRV 109
>gi|353234844|emb|CCA66865.1| related to Cleavage stimulation factor [Piriformospora indica DSM
11827]
Length = 304
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 33/47 (70%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343
VFVG +PY F E Q+ ++ S GT+ GF LV DR+TG KGYGFC Y
Sbjct: 5 VFVGNIPYNFAEEQLVQIFSSVGTVTGFRLVFDRETGKPKGYGFCEY 51
>gi|47212427|emb|CAF93583.1| unnamed protein product [Tetraodon nigroviridis]
Length = 500
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%)
Query: 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
G GP R++VG L + TE ++ + E FG + L+ D DTG SKGYGF + D
Sbjct: 226 GMMGPLRLYVGSLHFNITEEMLRGIFEPFGRIENIQLMVDSDTGRSKGYGFITFADAECA 285
Query: 350 DIACAALNGLKMGDKTLTVRRAT 372
A LNG ++ + + V T
Sbjct: 286 KKALEQLNGFELAGRPMKVGHVT 308
>gi|355705153|gb|EHH31078.1| RNA-binding motif protein, X-linked 2, partial [Macaca mulatta]
Length = 321
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+F+GGLPY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 37 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 96
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 97 NGIKIKGRTIRV 108
>gi|78183882|ref|YP_376316.1| RNA-binding region RNP-1 [Synechococcus sp. CC9902]
gi|116071506|ref|ZP_01468774.1| RNA-binding region RNP-1 [Synechococcus sp. BL107]
gi|78168176|gb|ABB25273.1| RNA-binding region RNP-1 [Synechococcus sp. CC9902]
gi|116065129|gb|EAU70887.1| RNA-binding region RNP-1 [Synechococcus sp. BL107]
Length = 145
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
R+++G LP F E ++ LL+ G F V DRDTG+ +G+GF DP V D
Sbjct: 4 RLYIGNLPQTFEEQELAALLKGIGEGIRFKSVLDRDTGSCRGFGFANVDDPKVADAVIEQ 63
Query: 356 LNGLKMGDKTLTVRRA 371
LNG + G TL V R+
Sbjct: 64 LNGKEFGGSTLRVERS 79
>gi|449494200|ref|XP_004159476.1| PREDICTED: uncharacterized protein LOC101225147 [Cucumis sativus]
Length = 527
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+ E+ + G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 9 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQE 383
G ++ + L V A G + ++
Sbjct: 69 QGYEINGRQLRVDFAENDKGADRNREQ 95
>gi|449446484|ref|XP_004141001.1| PREDICTED: uncharacterized protein LOC101211663 [Cucumis sativus]
Length = 527
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+ E+ + G + F LV DR+TG KGYGFC Y+D A L
Sbjct: 9 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 68
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQE 383
G ++ + L V A G + ++
Sbjct: 69 QGYEINGRQLRVDFAENDKGADRNREQ 95
>gi|338729372|ref|XP_001492640.3| PREDICTED: cleavage stimulation factor subunit 2 [Equus caballus]
Length = 601
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHG----FDLVKDRDTGNSKGYGFCVYQDPAVTDIA 352
VFVG +PY TE Q+K++ G + LV DR+TG KGYGFC YQD A
Sbjct: 18 VFVGNIPYEATEEQLKDVFSEVGPVVSSGRVIRLVYDRETGKPKGYGFCEYQDQETALSA 77
Query: 353 CAALNGLKMGDKTLTVRRATASSGQSKTEQESI 385
LNG + + L V A+S ++K E +S+
Sbjct: 78 MRNLNGREFSGRALRVD--NAASEKNKEELKSL 108
>gi|357490653|ref|XP_003615614.1| RNA binding domain protein [Medicago truncatula]
gi|355516949|gb|AES98572.1| RNA binding domain protein [Medicago truncatula]
Length = 393
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N AA+ ++ A + D VFVGG+P+ FTE + + +G + +LV+D+ T
Sbjct: 14 NSREAALNISEDASWHTKYKDSAYVFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGT 73
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T++A LNG ++ + + V
Sbjct: 74 GKSKGFAFIAYEDQRSTNLAVDNLNGAQVSGRIIRV 109
>gi|58271546|ref|XP_572929.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134115110|ref|XP_773853.1| hypothetical protein CNBH3050 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256481|gb|EAL19206.1| hypothetical protein CNBH3050 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229188|gb|AAW45622.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 373
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 46/72 (63%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
++VGGLP+ TE + + +G + +LV+D++TG S+G+GF +Y+D T +A +
Sbjct: 33 IYVGGLPFELTEGDLITIFSQWGEIMDVNLVRDKETGKSRGFGFLMYEDQRSTVLAVDNM 92
Query: 357 NGLKMGDKTLTV 368
NG ++ +TL V
Sbjct: 93 NGTQVIGRTLKV 104
>gi|225470686|ref|XP_002263312.1| PREDICTED: uncharacterized protein LOC100261746 [Vitis vinifera]
Length = 751
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 12/130 (9%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
++VG LP E + EL FG + ++KDR TG SKGYGF +++PA +A + +
Sbjct: 515 LYVGYLPQTMDENCLAELFAPFGKIAKTKVIKDRATGISKGYGFVKFENPAHAALALSHM 574
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQH---IAIQKMALQTSGMNTLGGGM- 412
+G K+ KTL VR T + S+L+ H IA + A++ +G G +
Sbjct: 575 HGYKIDGKTLAVREGT----RQWVTGSSVLSPDPNHPGSIAASQDAVRQTGFPVPPGSLL 630
Query: 413 ----SLFGET 418
++F ET
Sbjct: 631 PQHQTMFPET 640
>gi|345807592|ref|XP_549256.3| PREDICTED: RNA-binding motif protein, X-linked 2 [Canis lupus
familiaris]
Length = 336
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+F+GGLPY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 98 NGIKIKGRTIRV 109
>gi|33150650|gb|AAP97203.1|AF087905_1 splicing factor SF2 [Homo sapiens]
Length = 425
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 66/152 (43%), Gaps = 18/152 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 191 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 234
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 235 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 293
Query: 342 VYQDPAVTDIACAALN-GLKMGDKTLTVRRAT 372
+ D AC + GL + + + V T
Sbjct: 294 TFSDSECARRACGTVEWGLSLLGRPMRVGHVT 325
>gi|242025632|ref|XP_002433228.1| U2 snRNP component IST3, putative [Pediculus humanus corporis]
gi|212518769|gb|EEB20490.1| U2 snRNP component IST3, putative [Pediculus humanus corporis]
Length = 121
Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVGGLPY TE I + FG +LV+D+D+G S+G+ F Y+D T++A L
Sbjct: 36 VFVGGLPYDLTEGDIICVFSQFGEPVNINLVRDKDSGKSRGFCFLCYEDQRSTNLAVDNL 95
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 96 NGVKILGRTIRV 107
>gi|357611289|gb|EHJ67406.1| RNA binding motif protein X-linked 2 [Danaus plexippus]
Length = 185
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+FVGGLPY TE + + +G + +LV+D+DTG SKG+ F Y+D T +A L
Sbjct: 36 IFVGGLPYDLTEGDVICVFSQYGEIVNINLVRDKDTGRSKGFAFICYEDQRSTILAVDNL 95
Query: 357 NGLKMGDKTLTV 368
N +K+ +T+ V
Sbjct: 96 NSIKILGRTIRV 107
>gi|359321052|ref|XP_848710.2| PREDICTED: poly(U)-binding-splicing factor PUF60 isoform 1 [Canis
lupus familiaris]
Length = 560
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 97/222 (43%), Gaps = 36/222 (16%)
Query: 159 PLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV- 214
PL+P+Q M Q R RVYVG + E I F+ GP ++
Sbjct: 111 PLLPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF---------GPIKSIDM 161
Query: 215 ---NVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVAVRVRRPTDYNPTLAAALGPG 270
+V + H K FAFVE E A A+ ++ ++ G ++V RP++ G
Sbjct: 162 SWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI----------G 210
Query: 271 QPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330
Q P ++ A A +R++V + ++ IK + E+FG + L +D
Sbjct: 211 QAQPIIDQLA--------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDP 262
Query: 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
TG KGYGF Y+ + A +++N +G + L V +A
Sbjct: 263 TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 304
>gi|358396474|gb|EHK45855.1| hypothetical protein TRIATDRAFT_283470 [Trichoderma atroviride IMI
206040]
Length = 332
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
V+ GGLPY +E I + FG LV+D++TG SKG+G+ Y+D TD+A L
Sbjct: 35 VYFGGLPYELSEGDIATIFSQFGEPVFLKLVRDKETGKSKGFGWLKYEDQRSTDLAVDNL 94
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQE 383
G ++G + L V A + + + E
Sbjct: 95 GGAEIGGRLLRVDHARYQARDDEDQDE 121
>gi|298246745|ref|ZP_06970550.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
gi|297549404|gb|EFH83270.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
Length = 109
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
R++VGGLPY TE + +L E G + ++ DR+TG SKG+GF +A
Sbjct: 2 RIYVGGLPYQSTEQDLIQLFEQIGQVTFATVITDRETGRSKGFGFVEMSSDDEARVAIEQ 61
Query: 356 LNGLKMGDKTLTVRRA 371
LNG +G++T+TV A
Sbjct: 62 LNGSTLGNRTITVNEA 77
>gi|356532261|ref|XP_003534692.1| PREDICTED: splicing factor 3B subunit 4-like [Glycine max]
Length = 365
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 89/202 (44%), Gaps = 48/202 (23%)
Query: 178 YVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRT 231
YVG L P +E+ + F Q AGP VVNVY+ N + + FVE R+
Sbjct: 28 YVGNLDPQISEELLWELFVQ---------AGP---VVNVYVPKDRVTNQHQGYGFVEFRS 75
Query: 232 VEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
E+A A+ L+ I G +RV + + Q +L++ A
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRVNKAS-------------QDKKSLDVGA---------- 112
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTL-HGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
+F+G L E + + +FG + +++D DTGNS+G+GF Y +
Sbjct: 113 -----NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEAS 167
Query: 350 DIACAALNGLKMGDKTLTVRRA 371
D A A+NG + ++ +TV A
Sbjct: 168 DSAIEAMNGQYLCNRQITVSYA 189
>gi|298244419|ref|ZP_06968225.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
gi|297551900|gb|EFH85765.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
Length = 106
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
R++VGGLPY TE + +L E G + ++ DR+TG SKG+GF A
Sbjct: 2 RIYVGGLPYQSTEQDLIQLFEQIGQVTFATVITDRETGRSKGFGFVEMSSDDEARAAIEQ 61
Query: 356 LNGLKMGDKTLTVRRA 371
LNG +GD+T+TV A
Sbjct: 62 LNGSTLGDRTITVNEA 77
>gi|291245052|ref|XP_002742405.1| PREDICTED: MGC81970 protein-like isoform 2 [Saccoglossus
kowalevskii]
Length = 444
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%)
Query: 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
G GP R++VG L + TE ++ + E FG + L+KD +TG SKGYGF + D
Sbjct: 139 GNSGPMRLYVGSLHFNITEEMLRGIFEPFGKIDNIQLMKDNETGRSKGYGFITFHDAEDA 198
Query: 350 DIACAALNGLKMGDKTLTVRRATASS 375
A LNG ++ + + V T S
Sbjct: 199 KKALEQLNGFELAGRPMKVGHVTERS 224
>gi|225430808|ref|XP_002271291.1| PREDICTED: splicing factor 3B subunit 4 [Vitis vinifera]
Length = 373
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 95/221 (42%), Gaps = 51/221 (23%)
Query: 178 YVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRT 231
YVG L P E+ + F Q AGP VVNVY+ N + + FVE R+
Sbjct: 28 YVGNLDPQVTEELLWELFVQ---------AGP---VVNVYVPKDRVTNLHQGYGFVEFRS 75
Query: 232 VEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
E+A A+ L+ I G +RV + + Q +L++ A
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRVNKAS-------------QDKKSLDVGA---------- 112
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTL-HGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
+FVG L E + + +FG + +++D DTGNS+G+GF Y +
Sbjct: 113 -----NLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEAS 167
Query: 350 DIACAALNGLKMGDKTLTVRRATASSGQSK---TEQESILA 387
D A A+NG + ++ +TV A + + T E +LA
Sbjct: 168 DAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLA 208
>gi|397496325|ref|XP_003846130.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding motif protein, X-linked
2 [Pan paniscus]
Length = 350
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+F+GGLPY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 98 NGIKIKGRTIRV 109
>gi|4929627|gb|AAD34074.1|AF151837_1 CGI-79 protein [Homo sapiens]
Length = 351
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+F+GGLPY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 98 NGIKIKGRTIRV 109
>gi|308809696|ref|XP_003082157.1| RNA-binding protein ELAV/HU (RRM superfamily) (ISS) [Ostreococcus
tauri]
gi|116060625|emb|CAL57103.1| RNA-binding protein ELAV/HU (RRM superfamily) (ISS) [Ostreococcus
tauri]
Length = 679
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 82/196 (41%), Gaps = 35/196 (17%)
Query: 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV---YINHE-KKFAFVEMR 230
R+VY+G LP A + + FS SAG V + + H K FAF+
Sbjct: 384 RKVYIGRLPTTATAEGLKDMFS---------SAGVVQEVACIPDTVLGHSCKGFAFITFA 434
Query: 231 TVEEASNAMA-LDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIG 289
TV++A A + ++G++FE + VR P + PN NL
Sbjct: 435 TVDDAMKAASTMNGVMFEDRPMEVRMKN--APREQTQKEANEFDPNANL----------- 481
Query: 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
+VGG+ E ++E+ +G + +V+D T +KGYGF DP+
Sbjct: 482 --------YVGGVTESMNEDALREIFSPYGLVQKTKIVRDHATQAAKGYGFVQMMDPSHA 533
Query: 350 DIACAALNGLKMGDKT 365
A AL+G D T
Sbjct: 534 QAAITALDGQYFADST 549
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNS-KGYGFCVYQDPAVT 349
AE +V++G LP T +K++ S G + + D G+S KG+ F +
Sbjct: 380 AEDDRKVYIGRLPTTATAEGLKDMFSSAGVVQEVACIPDTVLGHSCKGFAFITFATVDDA 439
Query: 350 DIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHI 393
A + +NG+ D+ + VR A Q++ E A ++
Sbjct: 440 MKAASTMNGVMFEDRPMEVRMKNAPREQTQKEANEFDPNANLYV 483
>gi|393220899|gb|EJD06384.1| hypothetical protein FOMMEDRAFT_45167, partial [Fomitiporia
mediterranea MF3/22]
Length = 244
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 12/138 (8%)
Query: 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGN--SAGPGDAVVNVYINHEKKFAFVEMRTVE 233
R+Y+G + NE +A F + ++ I G+ + D V+ V N+E+ +A V+ + E
Sbjct: 3 RLYIGSITREINETNLARFLNTLVMGIDGDRQTRTSDDPVLAVQCNYEEGYAIVDFCSAE 62
Query: 234 EASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEG 293
+A+ AMA DGI F +R+RR DY G P+P+ N+ G+ S + A+
Sbjct: 63 DATAAMAFDGITFLNGPLRIRRLMDYG-------GVDSPAPS-NVHVPGVVSTNV--ADH 112
Query: 294 PDRVFVGGLPYYFTETQI 311
++V + LP Y E I
Sbjct: 113 ANKVPIRDLPMYLNEWNI 130
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,077,738,200
Number of Sequences: 23463169
Number of extensions: 315239584
Number of successful extensions: 1472118
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 13813
Number of HSP's successfully gapped in prelim test: 12717
Number of HSP's that attempted gapping in prelim test: 1201518
Number of HSP's gapped (non-prelim): 157010
length of query: 435
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 290
effective length of database: 8,957,035,862
effective search space: 2597540399980
effective search space used: 2597540399980
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)