BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013837
(435 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia
GN=U2AF65A PE=2 SV=1
Length = 555
Score = 469 bits (1207), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/319 (71%), Positives = 256/319 (80%), Gaps = 14/319 (4%)
Query: 112 SGFDMAPPAAAMLPGAA-VPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQA 170
SGFDMAPP A+LPGA GQ+PG A+P + NM P ++Q GA P+MPVQ MTQQA
Sbjct: 157 SGFDMAPPTTALLPGATDAAGQVPGTNPAIPGLFSNMFPLASSQFGALPMMPVQAMTQQA 216
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
TRHARRVYVGGLPP ANEQ++ATFFS VM AIGGN+AGPGDAVVNVYINHEKKFAFVEMR
Sbjct: 217 TRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMR 276
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
+VEEASNAMALDG+IFEG V+VRRP+DYNP+LAA LGP QPSPNLNLAAVG G+ GG
Sbjct: 277 SVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGSTPGSSGG 336
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
EGPDR+FVGGLPYYFTE+QI+ELLESFG L GFDLVKDR+TGNSKGY FCVYQD +VTD
Sbjct: 337 LEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTD 396
Query: 351 IACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGG 410
IACAALNG+KMGDKTLTVRRA + Q EQES+L AQQ IA+Q+ LQ + T
Sbjct: 397 IACAALNGIKMGDKTLTVRRANQGTTQPNPEQESVLLHAQQQIALQRFMLQPGALAT--- 453
Query: 411 GMSLFGETLAKVLCLTEMM 429
KVLCLTE++
Sbjct: 454 ----------KVLCLTEVV 462
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 463 bits (1192), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/321 (70%), Positives = 258/321 (80%), Gaps = 14/321 (4%)
Query: 112 SGFDMAPPAAAMLPG-AAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQA 170
SGFDMAPP +AMLPG A GQ+PG +P M NM P + Q GA P+MP+Q MTQQA
Sbjct: 175 SGFDMAPPTSAMLPGITAAAGQVPGTNPPIPGMFPNMFPLASGQFGALPVMPIQAMTQQA 234
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
TRHARRVYVGGLP ANEQ++ATFFS VM+AIGGN+AGPGDAVVNVYIN+EKKFAFVEMR
Sbjct: 235 TRHARRVYVGGLPAHANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINYEKKFAFVEMR 294
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
+VEEASNAMALDGIIFEG +VRRP+DYNP+LAA LGP QP+PNLNLAAVGL+ G+ GG
Sbjct: 295 SVEEASNAMALDGIIFEGAPCKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLSPGSAGG 354
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
EGPDR+FVGGLPYYFTE QI+ELLESFG L GFDLVKDR+TGNSKGY FCVYQD +VTD
Sbjct: 355 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDVSVTD 414
Query: 351 IACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGG 410
IACAALNG+KMGDKTLTVRRA + Q K EQES+L AQQ IA+Q++ LQ + + T
Sbjct: 415 IACAALNGIKMGDKTLTVRRANQGTTQPKPEQESVLLHAQQQIALQRLMLQPATLAT--- 471
Query: 411 GMSLFGETLAKVLCLTEMMKS 431
KVL LTE++ +
Sbjct: 472 ----------KVLSLTEVISA 482
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 456 bits (1172), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/322 (68%), Positives = 255/322 (79%), Gaps = 16/322 (4%)
Query: 113 GFDMAPPAAAMLPGAAVPGQLPGVPSA--VPEMAQNMLPF-GATQLGAFPLMPVQVMTQQ 169
GFDMAPP A GQ+P VP+ +P M NM P QLGA P++PVQ MTQQ
Sbjct: 190 GFDMAPPDMLAATAVAAAGQVPSVPTTATIPGMFSNMFPMVPGQQLGALPVLPVQAMTQQ 249
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEM 229
ATRHARRVYVGGLPP ANEQ+++TFFSQVM+AIGGN+AGPGDAVVNVYINHEKKFAFVEM
Sbjct: 250 ATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEM 309
Query: 230 RTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIG 289
R+VEEASNAMALDGII EGV V+VRRPTDYNP+LAA LGP QP+PNLNL AVGL+SG+ G
Sbjct: 310 RSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGSTG 369
Query: 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
G EGPDR+FVGGLPYYFTE QI+ELLESFG L GF+LVKDR+TGNSKGY FCVYQDP+VT
Sbjct: 370 GLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVT 429
Query: 350 DIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLG 409
DIACAALNG+KMGDKTLTVRRA + Q K EQE +L AQQ IA+Q++ Q G
Sbjct: 430 DIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGG----- 484
Query: 410 GGMSLFGETLAKVLCLTEMMKS 431
T K++CLT+++ +
Sbjct: 485 --------TPTKIVCLTQVVTA 498
>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
GN=U2AF65A PE=2 SV=2
Length = 573
Score = 435 bits (1118), Expect = e-121, Method: Compositional matrix adjust.
Identities = 221/325 (68%), Positives = 254/325 (78%), Gaps = 17/325 (5%)
Query: 109 KRRSGFDMAPPAAAMLPGAA-VPGQLPGVPSAVPE--MAQNMLPFGATQ-LGAFPLMPVQ 164
+R SGFDMAPPA+AML A V GQ+P P +P M NM P Q G +MP+Q
Sbjct: 169 QRVSGFDMAPPASAMLAAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQ 228
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF 224
MTQQATRHARRVYVGGL P ANEQ++ATFFSQVM A+GGN+AGPGDAVVNVYINHEKKF
Sbjct: 229 AMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKF 288
Query: 225 AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLA 284
AFVEMR+VEEASNAM+LDGIIFEG V+VRRP+DYNP+LAA LGP QPSP+LNLAAVGL
Sbjct: 289 AFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLT 348
Query: 285 SGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQ 344
GA GG EGPDR+FVGGLPYYFTE+Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQ
Sbjct: 349 PGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ 408
Query: 345 DPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSG 404
D +VTDIACAALNG+KMGDKTLTVRRA + K EQE++L AQQ IA Q++ LQ
Sbjct: 409 DLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGA 468
Query: 405 MNTLGGGMSLFGETLAKVLCLTEMM 429
+ T V+CLT+++
Sbjct: 469 VATT-------------VVCLTQVV 480
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 35 RHHRDFKSGGDDRRRDKNYKYDREGIRDHDRTDRHRDYNRDKERRHR----HRSRSHSSD 90
R H S DR R+K DRE + R R RD + KER HR R H S
Sbjct: 42 RDHERETSRSKDREREKGRDKDRERDSEVSRRSRDRDGEKSKERSRDKDRDHRERHHRSS 101
Query: 91 RFRNRS 96
R R+ S
Sbjct: 102 RHRDHS 107
>sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Triticum aestivum
GN=U2AF65B PE=2 SV=1
Length = 543
Score = 430 bits (1105), Expect = e-119, Method: Compositional matrix adjust.
Identities = 224/333 (67%), Positives = 259/333 (77%), Gaps = 19/333 (5%)
Query: 102 SRSPSKSKRRSGFDMAPPAAAMLP---GAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAF 158
SRS SKSKR SGFD+ P A ++LP P QLPG S++P M NMLPF Q+
Sbjct: 134 SRSHSKSKRVSGFDLGPTAQSVLPQFPTIPTPSQLPG--SSIPGMFPNMLPFADGQINPL 191
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
+ P Q MTQQATRHARRVYVGGLPP ANEQ++A +F+QVM AIGGN+AGPGDAV+NVYI
Sbjct: 192 VMQP-QAMTQQATRHARRVYVGGLPPSANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYI 250
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
NH+KKFAFVEMR+VEEASNAMALDGI+FEG V+VRRPTDYNP+LAAALGP QPS NLNL
Sbjct: 251 NHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSSNLNL 310
Query: 279 AAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
AAVGL G+ GG EGPDR+FVGGLPYYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY
Sbjct: 311 AAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGY 370
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKM 398
FCVYQD VTDIACAALNG+KMGDKTLTVRRA S Q + EQE+IL QAQQ + +QK+
Sbjct: 371 AFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGSAQPRPEQENILLQAQQQVQLQKL 430
Query: 399 ALQTSGMNTLGGGMSLFGETLAKVLCLTEMMKS 431
Q + T KV+CLT+++ +
Sbjct: 431 VYQVGALPT-------------KVVCLTQVVTA 450
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa subsp.
japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/323 (67%), Positives = 252/323 (78%), Gaps = 19/323 (5%)
Query: 112 SGFDMAPPAAAMLP---GAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQ 168
SGFDMAPPA A++P P Q PG +A+P M NMLP G Q + P Q MTQ
Sbjct: 151 SGFDMAPPAQAVVPQFPAIPTPSQFPG--TAIPGMFPNMLPMGVGQFNPLVIQP-QAMTQ 207
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVE 228
QATRHARRVYVGGLPP ANEQ++A +F+QVM AIGGN+AGPGDAV+NVYINH+KKFAFVE
Sbjct: 208 QATRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVE 267
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
MR+VEEASNAMALDGI+FEG V+VRRPTDYNP+LAAALGP QPSPNLNLAAVGL G+
Sbjct: 268 MRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGLTPGSA 327
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GG EGPDR+FVGGLPYYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQD V
Sbjct: 328 GGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNV 387
Query: 349 TDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTL 408
TDIACAALNG+KMGDKTLTVRRA + Q + EQESIL QAQQ + +QK+ Q + T
Sbjct: 388 TDIACAALNGIKMGDKTLTVRRANQGAAQPRPEQESILLQAQQQVQLQKLVYQVGALPT- 446
Query: 409 GGGMSLFGETLAKVLCLTEMMKS 431
KV+CLT+++ +
Sbjct: 447 ------------KVVCLTQVVSA 457
>sp|Q2QKB3|U2A2A_WHEAT Splicing factor U2af large subunit A OS=Triticum aestivum
GN=U2AF65A PE=2 SV=1
Length = 591
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 229/407 (56%), Positives = 275/407 (67%), Gaps = 26/407 (6%)
Query: 29 GERGRDRHHRDFKSGGDDRRRDKNYKYDREGIRDHDRTDRHRDYNRDKERRHRHRSRSHS 88
G R R+RHHRD + G DR R + D + D + R R
Sbjct: 131 GSRDRERHHRDHREGSRDRER---HHRDHRERSERREHRDRSDDRDYRRSCDRDAERRDR 187
Query: 89 SDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPAA-AMLPGAAVPGQLPGVPSAVPEMAQNM 147
R +S SP RS S+SKR SGFD P A +L A P QLP +P+A P M NM
Sbjct: 188 DRDGHRRHRSRSPLRSESQSKRMSGFDQRPSEAIPILAPDATPSQLPELPAANPGMFPNM 247
Query: 148 LP--FGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGN 205
LP LG PL MTQQATRHARRVYVGGLPP+ANEQ +A FF+QVM AIGGN
Sbjct: 248 LPNLVNVPALGQ-PL----AMTQQATRHARRVYVGGLPPIANEQTVAVFFNQVMAAIGGN 302
Query: 206 SAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAA 265
+ G AVVNVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG V+VRRPTDYNP+ AA
Sbjct: 303 TFALGHAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSQAA 362
Query: 266 ALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFD 325
ALGP QP+PNLNLAAVGL GA GG EGPDR+FVGGLPYYFTE Q++ELLE+FG L GFD
Sbjct: 363 ALGPSQPNPNLNLAAVGLTPGAGGGLEGPDRIFVGGLPYYFTEAQVRELLETFGPLRGFD 422
Query: 326 LVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESI 385
+VKD++TGNSKGY FC+Y+D VTDIACAALNG+++GD+TLTVRRA + + EQE+I
Sbjct: 423 IVKDKETGNSKGYAFCLYKDGTVTDIACAALNGIQLGDRTLTVRRAN-QGAEPRPEQENI 481
Query: 386 LAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETL-AKVLCLTEMMKS 431
L QAQQ ++++ + G TL KV+CLT+++ +
Sbjct: 482 LLQAQQEAQMKRLVYEV-------------GRTLTTKVVCLTQVVSA 515
>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa subsp.
japonica GN=U2AF65A PE=2 SV=2
Length = 574
Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/298 (66%), Positives = 228/298 (76%), Gaps = 12/298 (4%)
Query: 132 QLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAI 191
Q+P V A+ M NM T + P Q MTQQATRHARRVYVGGLPP ANE +
Sbjct: 196 QVPVVAPAISGMLPNMFNLTQTPFTPLVIQP-QAMTQQATRHARRVYVGGLPPTANEHTV 254
Query: 192 ATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251
A +F+QVM A+GGN+AGPGDAV+NVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG V
Sbjct: 255 AVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPV 314
Query: 252 RVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQI 311
+VRRPTDYNP+LAAALGP QP+PNLNLAAVGL G+ GG EGPDR+FVGGLPYYFTE Q+
Sbjct: 315 KVRRPTDYNPSLAAALGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQV 374
Query: 312 KELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
+ELLESFG L GFDLVKDR+TGNSKGY FCVYQD VTDIACAALNG+KMGDKTLTVRRA
Sbjct: 375 RELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRA 434
Query: 372 TASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ Q + EQES+L QQ +QK+ Q G G KV+CLT+++
Sbjct: 435 NQGASQPRPEQESMLLHVQQQAQMQKLMFQVGG-----------GALPTKVVCLTQVV 481
>sp|P26369|U2AF2_MOUSE Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1
SV=3
Length = 475
Score = 195 bits (496), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 179/335 (53%), Gaps = 36/335 (10%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
RSP K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 78 RSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT- 135
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+
Sbjct: 136 -------PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVL 187
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S
Sbjct: 188 AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SE 240
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
N ++ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG
Sbjct: 241 NPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 298
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIA 394
SKGY FC Y D VTD A A LNG+++GDK L V+RA+ + + + L I
Sbjct: 299 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA------KNATLVSLPSTIN 352
Query: 395 IQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ LQ G+ + M G +VLCL M+
Sbjct: 353 QTPVTLQVPGLMSSQVQM---GGHPTEVLCLMNMV 384
>sp|P26368|U2AF2_HUMAN Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1
SV=4
Length = 475
Score = 195 bits (496), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 179/335 (53%), Gaps = 36/335 (10%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLP-----GAAVPGQLPGVPSAVPEMAQNMLPFGATQ 154
RSP K K R +D+ PP + GQ+P + +P M + L T
Sbjct: 78 RSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPAT-ALLPTMTPDGLAVTPT- 135
Query: 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV 214
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+
Sbjct: 136 -------PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVL 187
Query: 215 NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP 274
V IN +K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S
Sbjct: 188 AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SE 240
Query: 275 NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334
N ++ G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG
Sbjct: 241 NPSVYVPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 298
Query: 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIA 394
SKGY FC Y D VTD A A LNG+++GDK L V+RA+ + + + L I
Sbjct: 299 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA------KNATLVSPPSTIN 352
Query: 395 IQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMM 429
+ LQ G+ + M G +VLCL M+
Sbjct: 353 QTPVTLQVPGLMSSQVQM---GGHPTEVLCLMNMV 384
>sp|Q24562|U2AF2_DROME Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster
GN=U2af50 PE=2 SV=1
Length = 416
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 161/303 (53%), Gaps = 46/303 (15%)
Query: 131 GQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQA 190
GQ+P S VP+ Q +P V+ TR ARR+YVG +P E+
Sbjct: 66 GQIPA--SVVPDTPQTAVP---------------VVGSTITRQARRLYVGNIPFGVTEEE 108
Query: 191 IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250
+ FF+Q M +G A G V+ IN +K FAF+E R+++E + AMA DGI +G +
Sbjct: 109 MMEFFNQQMHLVGLAQAA-GSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQS 167
Query: 251 VRVRRPTDYNPTLAAALGPG-QPSPNLNLAAVGLASGAIGGA--EGPDRVFVGGLPYYFT 307
+++RRP DY P PG +P + A V +SG I + P ++F+GGLP Y
Sbjct: 168 LKIRRPHDYQPM------PGITDTPAIKPAVV--SSGVISTVVPDSPHKIFIGGLPNYLN 219
Query: 308 ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367
+ Q+KELL SFG L F+LVKD TG SKGY FC Y D ++TD + A LNG+++GDK L
Sbjct: 220 DDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLI 279
Query: 368 VRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGM-NTLGGGMSLFGETLAKVLCLT 426
V+RA+ + ++ + Q + LQ G+ N + G +VLCL
Sbjct: 280 VQRASVGAKNAQNAANT----------TQSVMLQVPGLSNVVTSGPP------TEVLCLL 323
Query: 427 EMM 429
M+
Sbjct: 324 NMV 326
>sp|P90727|U2AF2_CAEBR Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae
GN=uaf-1 PE=3 SV=2
Length = 488
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/246 (39%), Positives = 141/246 (57%), Gaps = 15/246 (6%)
Query: 135 GVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATF 194
G + P +NM GA G+ V V+ T +RR+YVG +P NE+A+ F
Sbjct: 136 GFENITPMEYKNMQASGAVPRGSVQ-SAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDF 194
Query: 195 FSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVR 254
F+Q M + + PG+ ++ IN +K FAF+E R+++E + MA DGI F G ++VR
Sbjct: 195 FNQQM-HLCNLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVR 253
Query: 255 RPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKEL 314
RP DY P+ Q + ++N A + ++S + A +++F+GGLP Y TE Q+KEL
Sbjct: 254 RPRDYQPS--------QNTFDMN-ARMPVSSIVVDSA---NKIFIGGLPNYLTEDQVKEL 301
Query: 315 LESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374
L SFG L F L D GNSKGY F Y DP +TD A A LNG+++GDK L V+ A A+
Sbjct: 302 LCSFGPLKAFSLNVDS-QGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACAN 360
Query: 375 SGQSKT 380
+ T
Sbjct: 361 QTRHNT 366
>sp|P90978|U2AF2_CAEEL Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis elegans
GN=uaf-1 PE=2 SV=2
Length = 496
Score = 162 bits (410), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 132/218 (60%), Gaps = 14/218 (6%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEK 222
V V+ T +RR+YVG +P NE+A+ FF+Q M + G + PG+ ++ IN +K
Sbjct: 172 VPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDFFNQQM-HLCGLAQAPGNPILLCQINLDK 230
Query: 223 KFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVG 282
FAF+E R+++E + MA DGI F G ++VRRP DY P+ Q + ++N + +
Sbjct: 231 NFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQPS--------QNTFDMN-SRMP 281
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
+++ + A +++F+GGLP Y TE Q+KELL SFG L F L D GNSKGY F
Sbjct: 282 VSTIVVDSA---NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDS-QGNSKGYAFAE 337
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKT 380
Y DP +TD A A LNG+++GDK L V+ A A+ + T
Sbjct: 338 YLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQQRHNT 375
>sp|P36629|U2AF2_SCHPO Splicing factor U2AF 59 kDa subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=prp2 PE=1 SV=1
Length = 517
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 124/256 (48%), Gaps = 18/256 (7%)
Query: 109 KRRSGFDMAPPAAAMLPG--AAVPG--QLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQ 164
++RS +D+ PP ++ A + G LPG P A + +L F + G+ + P
Sbjct: 130 RKRSLWDIKPPGYELVTADQAKMSGVFPLPGAPRAAVTDPEKLLEFARSAEGSI-IAPPP 188
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF 224
+ A+R ARR+ V G+P E A +F + + + +V + E+ F
Sbjct: 189 PLQPGASRQARRLVVTGIPNEFVEDAFVSFIEDLFISTTYHKPE-TKHFSSVNVCKEENF 247
Query: 225 AFVEMRTVEEASNAMALDGIIFEG-VAVRVRRPTDYNPTLAAALGPGQPSPNLNLA-AVG 282
A +E+ T E+A+ L + V ++ +R +Y + P Q +P ++ +
Sbjct: 248 AILEVATPEDATFLWGLQSESYSNDVFLKFQRIQNY-------IVP-QITPEVSQKRSDD 299
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
A + + D++++ LP E Q+ ELL+ FG L F L+K+ G+SKG+ FC
Sbjct: 300 YAKNDV--LDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCE 357
Query: 343 YQDPAVTDIACAALNG 358
+++P+ ++A + L+G
Sbjct: 358 FKNPSDAEVAISGLDG 373
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVE 228
R R V+VG +P A E+ + FS+V GP + VY K + F E
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEV---------GPVVSFRLVYDRETGKPKGYGFCE 63
Query: 229 MRTVEEASNAM-ALDGIIFEGVAVRV 253
+ E A +AM L+G F G A+RV
Sbjct: 64 YQDQETALSAMRNLNGREFSGRALRV 89
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
SV=1
Length = 577
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVE 228
R R V+VG +P A E+ + FS+V GP + VY K + F E
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEV---------GPVVSFRLVYDRETGKPKGYGFCE 63
Query: 229 MRTVEEASNAM-ALDGIIFEGVAVRV 253
+ E A +AM L+G F G A+RV
Sbjct: 64 YQDQETALSAMRNLNGREFSGRALRV 89
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVE 228
R R V+VG +P A E+ + FS+V GP + VY K + F E
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEV---------GPVVSFRLVYDRETGKPKGYGFCE 63
Query: 229 MRTVEEASNAM-ALDGIIFEGVAVRV 253
+ E A +AM L+G F G A+RV
Sbjct: 64 YQDQETALSAMRNLNGREFSGRALRV 89
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRT 231
R R V+VG +P A E+ + FS+V + + V + K + F E +
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFR------LVYDRETGKPKGYGFCEYQD 66
Query: 232 VEEASNAM-ALDGIIFEGVAVRV-RRPTDYNPTLAAALGPGQP 272
E A +AM L+G F G A+RV ++ N +LGP P
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2
SV=1
Length = 577
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVE 228
R R V+VG +P A E+ + FS+V GP + VY K + F E
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEV---------GPVVSFRLVYDRETGKPKGYGFCE 63
Query: 229 MRTVEEASNAM-ALDGIIFEGVAVRV 253
+ E A +AM L+G F G A+RV
Sbjct: 64 YQDQETALSAMRNLNGREFSGRALRV 89
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens
GN=CSTF2T PE=1 SV=1
Length = 616
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESI 385
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRVD--NAASEKNKEELKSL 104
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRT 231
R R V+VG +P A E+ + FS+V + + V + K + F E +
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFR------LVYDRETGKPKGYGFCEYQD 66
Query: 232 VEEASNAM-ALDGIIFEGVAVRV-RRPTDYNPTLAAALGPGQP 272
E A +AM L+G F G A+RV ++ N +LGP P
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 207 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 250
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 251 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 309
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 310 TFSDSECARRALEQLNGFELAGRPMRVGHVT 340
>sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1
SV=1
Length = 326
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+FVGGLPY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 98 NGIKIKGRTIRV 109
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 236
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS 378
+ D A LNG ++ + + V R ASS S
Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASS 337
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 236
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 344
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 236
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQSKTEQESI 385
+ D A LNG ++ + + V R ASS S + + +
Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL 344
>sp|Q9P6P7|YKCG_SCHPO Uncharacterized RNA-binding protein C644.16 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC644.16 PE=4 SV=1
Length = 422
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
V+VG +PY E Q+ ++ + G + F LV D ++G KGYGFC Y DPA A L
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 357 NGLKMGDKTLTVRRATA 373
N G + L V TA
Sbjct: 67 NNYDAGTRRLRVDFPTA 83
>sp|O43040|CTF1_SCHPO Cleavage and termination factor 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ctf1 PE=1 SV=1
Length = 363
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY +E Q+ E+ G + F LV D +TG+ KGYGFC + D T +A L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 357 NGLKMGDKTLTVR 369
N ++G + + V
Sbjct: 69 NNSELGPRKIRVE 81
>sp|Q28FX0|ELAV3_XENTR ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1
Length = 343
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 280 AVGLASGAIGGAE-GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
+VG+ +G G A+ + V LP T+ + K L S G + LV+D+ TG S GY
Sbjct: 19 SVGILNGTNGAADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGY 78
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
GF Y DP D A LNGLK+ KT+ V A SS
Sbjct: 79 GFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSS 115
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 90/221 (40%), Gaps = 29/221 (13%)
Query: 177 VYVGGLPPLANEQAIATFFSQ---VMTA-------IGGNSAGPG----DAVVNVY----- 217
+YV LP N++ + FSQ ++T+ G S G G D +
Sbjct: 123 LYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKG 182
Query: 218 INHEKKFAFVEMRTVEEASN-----AMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP 272
+N +K E TV+ A+N AL +++ A R P ++ T P
Sbjct: 183 LNGQKPLGASEPITVKFANNPSQKTGQALLTHLYQTTARRYTGPL-HHQTQRFRFSPITI 241
Query: 273 SPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
NLA V L G +FV L E+ + +L FG + +++D T
Sbjct: 242 DSVTNLAGVSLTGPTTAGW----CIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTT 297
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
KG+GF + +A A+LNG ++GD+ L V T+
Sbjct: 298 NKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTS 338
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 95/219 (43%), Gaps = 20/219 (9%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---IN 219
V+V Q +++VG LP + A+A F + AG + V +Y
Sbjct: 75 VEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFER---------AGNVEMVEVIYDKLTG 125
Query: 220 HEKKFAFVEMRTVEEASNA-MALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
+ F FV M T EE A +G +G A+RV ++ G G+ N +
Sbjct: 126 RSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGG-NSSY 184
Query: 279 AAVGLASGAIGGAEG------PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
+ + GGA G +RV+VG L + + +KEL G + +V DRD+
Sbjct: 185 GGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDS 244
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
G S+G+GF Y + A +LNG+ + +++ V A
Sbjct: 245 GRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAA 283
>sp|B0BN49|RBMX2_RAT RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2
PE=2 SV=1
Length = 328
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N +G+A +E D +F+GGLPY TE I + +G + +LV+D+ T
Sbjct: 14 NEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 73
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 74 GKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRV 109
>sp|Q9Y388|RBMX2_HUMAN RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1
SV=2
Length = 322
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N +G+A +E D +F+GGLPY TE I + +G + +LV+D+ T
Sbjct: 14 NEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 73
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 74 GKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRV 109
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 95/219 (43%), Gaps = 20/219 (9%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---IN 219
V+V Q +++VG LP + A+A F + AG + V +Y
Sbjct: 76 VEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFER---------AGNVEIVEVIYDKLSG 126
Query: 220 HEKKFAFVEMRTVEEASNA-MALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
+ F FV M T EE A +G +G A+RV ++ G G+ N +
Sbjct: 127 RSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGG-NSSY 185
Query: 279 AAVGLASGAIGGAEG------PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
+ + GGA G +RV+VG L + + +KEL G + +V DRD+
Sbjct: 186 GGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDS 245
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
G S+G+GF Y + A +LNG+ + +++ V A
Sbjct: 246 GRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAA 284
>sp|Q91584|ELAV3_XENLA ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1
Length = 348
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 280 AVGLASGAIGGAE-GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
VG+ +G G A+ + V LP T+ + K L S G + LV+D+ TG S GY
Sbjct: 18 CVGILNGTNGEADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGY 77
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375
GF Y DP D A LNGLK+ KT+ V A SS
Sbjct: 78 GFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSS 114
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 93/226 (41%), Gaps = 33/226 (14%)
Query: 177 VYVGGLPPLANEQAIATFFSQ---VMTA------IGGNSAGPG----DAVVNVY-----I 218
+YV LP N++ + FSQ ++T+ + G S G G D + +
Sbjct: 122 LYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 181
Query: 219 NHEKKFAFVEMRTVEEASN-----AMALDGIIFEGVAVRVRRPTD-----YNP-TLAAAL 267
N +K E TV+ A+N AL +++ A R P ++P ++
Sbjct: 182 NGQKPLGASEPITVKFANNPSQKTGQALLTHLYQTTARRYTGPLHHQTQRFSPLSILPRF 241
Query: 268 GPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLV 327
P NLA V L G +FV L E+ + +L FG + ++
Sbjct: 242 SPITIDSVTNLAGVSLTGPTTAGW----CIFVYNLSPEADESVLWQLFGPFGAVTNVKVI 297
Query: 328 KDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
+D T KG+GF + +A A+LNG ++GD+ L V T+
Sbjct: 298 RDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTS 343
>sp|Q3SZM1|MK67I_BOVIN MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus
GN=MKI67IP PE=2 SV=1
Length = 296
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%)
Query: 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 353
P ++VG LP ETQI+ FGT+ F L + + TGNSKGYGF ++ V IA
Sbjct: 44 PGVIYVGHLPPTLYETQIRAYFSQFGTVTRFRLSRSKKTGNSKGYGFVEFESEDVAKIAA 103
Query: 354 AALNGLKMGDKTL 366
+N G++ L
Sbjct: 104 ETMNNYLFGERLL 116
>sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3
Length = 367
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+ V LP T+ + K L S G + LV+D+ TG S GYGF Y DP D A L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 357 NGLKMGDKTLTVRRATASSG---------------QSKTEQESILAQAQQHIAIQKMALQ 401
NGLK+ KT+ V A SS S+ E E + +Q + I + + Q
Sbjct: 101 NGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQ 160
Query: 402 TSGMN 406
+G++
Sbjct: 161 VTGVS 165
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+FV L E+ + +L FG + +++D T KG+GF + +A A+L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 357 NGLKMGDKTLTVRRATA 373
NG ++G++ L V T+
Sbjct: 346 NGYRLGERVLQVSFKTS 362
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60
PE=2 SV=2
Length = 564
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 96/222 (43%), Gaps = 36/222 (16%)
Query: 159 PLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV- 214
PL P+Q M Q R RVYVG + E I F+ GP ++
Sbjct: 115 PLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF---------GPIKSIDM 165
Query: 215 ---NVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVAVRVRRPTDYNPTLAAALGPG 270
+V + H K FAFVE E A A+ ++ ++ G ++V RP++ G
Sbjct: 166 SWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI----------G 214
Query: 271 QPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330
Q P ++ A A +R++V + ++ IK + E+FG + L +D
Sbjct: 215 QAQPIIDQLA--------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDP 266
Query: 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
TG KGYGF Y+ + A +++N +G + L V +A
Sbjct: 267 TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 308
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2
SV=2
Length = 564
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 96/222 (43%), Gaps = 36/222 (16%)
Query: 159 PLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV- 214
PL P+Q M Q R RVYVG + E I F+ GP ++
Sbjct: 115 PLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF---------GPIKSIDM 165
Query: 215 ---NVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVAVRVRRPTDYNPTLAAALGPG 270
+V + H K FAFVE E A A+ ++ ++ G ++V RP++ G
Sbjct: 166 SWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI----------G 214
Query: 271 QPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330
Q P ++ A A +R++V + ++ IK + E+FG + L +D
Sbjct: 215 QAQPIIDQLA--------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDP 266
Query: 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
TG KGYGF Y+ + A +++N +G + L V +A
Sbjct: 267 TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 308
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1
SV=1
Length = 559
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 96/222 (43%), Gaps = 36/222 (16%)
Query: 159 PLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV- 214
PL P+Q M Q R RVYVG + E I F+ GP ++
Sbjct: 110 PLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF---------GPIKSIDM 160
Query: 215 ---NVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVAVRVRRPTDYNPTLAAALGPG 270
+V + H K FAFVE E A A+ ++ ++ G ++V RP++ G
Sbjct: 161 SWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI----------G 209
Query: 271 QPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330
Q P ++ A A +R++V + ++ IK + E+FG + L +D
Sbjct: 210 QAQPIIDQLA--------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDP 261
Query: 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
TG KGYGF Y+ + A +++N +G + L V +A
Sbjct: 262 TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 303
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2
SV=1
Length = 558
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 96/222 (43%), Gaps = 36/222 (16%)
Query: 159 PLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV- 214
PL P+Q M Q R RVYVG + E I F+ GP ++
Sbjct: 109 PLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF---------GPIKSIDM 159
Query: 215 ---NVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVAVRVRRPTDYNPTLAAALGPG 270
+V + H K FAFVE E A A+ ++ ++ G ++V RP++ G
Sbjct: 160 SWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI----------G 208
Query: 271 QPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330
Q P ++ A A +R++V + ++ IK + E+FG + L +D
Sbjct: 209 QAQPIIDQLA--------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDP 260
Query: 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
TG KGYGF Y+ + A +++N +G + L V +A
Sbjct: 261 TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 302
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 96/222 (43%), Gaps = 36/222 (16%)
Query: 159 PLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV- 214
PL P+Q M Q R RVYVG + E I F+ GP ++
Sbjct: 81 PLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF---------GPIKSIDM 131
Query: 215 ---NVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVAVRVRRPTDYNPTLAAALGPG 270
+V + H K FAFVE E A A+ ++ ++ G ++V RP++ G
Sbjct: 132 SWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI----------G 180
Query: 271 QPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330
Q P ++ A A +R++V + ++ IK + E+FG + L +D
Sbjct: 181 QAQPIIDQLA--------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDP 232
Query: 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
TG KGYGF Y+ + A +++N +G + L V +A
Sbjct: 233 TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 274
>sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1
Length = 367
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 42/79 (53%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+ V LP T+ + K L S G + LV+D+ TG S GYGF Y DP D A L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 357 NGLKMGDKTLTVRRATASS 375
NGLK+ KT+ V A SS
Sbjct: 101 NGLKLQTKTIKVSYARPSS 119
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+FV L E+ + +L FG + +++D T KG+GF + +A A+L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 357 NGLKMGDKTLTVRRATA 373
NG ++G++ L V T+
Sbjct: 346 NGYRLGERVLQVSFKTS 362
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
++V GLP ++ ++++L +G + ++ D+ TG S+G GF + + A L
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 357 NGLK 360
NG K
Sbjct: 187 NGQK 190
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 90/200 (45%), Gaps = 34/200 (17%)
Query: 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP---GDAVVNVYINHEKKFAFVEMRTV 232
+++VG LP + + +A F ++AG + + N + + F FV M TV
Sbjct: 56 KLFVGNLPYDVDSEKLAGIF---------DAAGVVEIAEVIYNRETDRSRGFGFVTMSTV 106
Query: 233 EEASNAMAL-DGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGA 291
EEA A+ L +G +G + V + AA G + +P G
Sbjct: 107 EEAEKAVELLNGYDMDGRQLTVNK--------AAPRGSPERAPR-------------GDF 145
Query: 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDI 351
E RV+VG LP+ +++++L G + +V DR+TG S+G+GF + +
Sbjct: 146 EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVND 205
Query: 352 ACAALNGLKMGDKTLTVRRA 371
A AAL+G + + + V A
Sbjct: 206 AIAALDGQTLDGRAVRVNVA 225
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 282 GLASGAIGGAEGPD--RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
G G G +E P+ ++FVG LPY ++ + ++ G + +++ +R+T S+G+G
Sbjct: 40 GGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFG 99
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
F + A LNG M + LTV +A
Sbjct: 100 FVTMSTVEEAEKAVELLNGYDMDGRQLTVNKA 131
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 89/212 (41%), Gaps = 41/212 (19%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
P+ Q AT VYVGGL +E + F Q + N+ P D V
Sbjct: 5 PISERNQDAT-----VYVGGLDEKVSEPLLWELFLQAGPVV--NTHMPKDRVTG----QH 53
Query: 222 KKFAFVEMRTVEEASNAMALDGII-FEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
+ + FVE + E+A A+ + +I G +RV + + +N NL++ A
Sbjct: 54 QGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNK-------------NLDVGA 100
Query: 281 VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYG 339
+F+G L E + + +FG L +++D DTGNSKGY
Sbjct: 101 ---------------NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYA 145
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
F + +D A A+NG + ++ +TV A
Sbjct: 146 FINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%)
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
+A+G I V+VGGL +E + EL G + + KDR TG +GYGF
Sbjct: 1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 60
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
+ D A +N +K+ K + V +A+A
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVNKASA 91
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 89/212 (41%), Gaps = 41/212 (19%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
P+ Q AT VYVGGL +E + F Q + N+ P D V
Sbjct: 5 PISERNQDAT-----VYVGGLDEKVSEPLLWELFLQAGPVV--NTHMPKDRVTG----QH 53
Query: 222 KKFAFVEMRTVEEASNAMALDGII-FEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
+ + FVE + E+A A+ + +I G +RV + + +N NL++ A
Sbjct: 54 QGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNK-------------NLDVGA 100
Query: 281 VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYG 339
+F+G L E + + +FG L +++D DTGNSKGY
Sbjct: 101 ---------------NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYA 145
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
F + +D A A+NG + ++ +TV A
Sbjct: 146 FINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%)
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
+A+G I V+VGGL +E + EL G + + KDR TG +GYGF
Sbjct: 1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 60
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
+ D A +N +K+ K + V +A+A
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVNKASA 91
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 89/212 (41%), Gaps = 41/212 (19%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
P+ Q AT VYVGGL +E + F Q + N+ P D V
Sbjct: 5 PISERNQDAT-----VYVGGLDEKVSEPLLWELFLQAGPVV--NTHMPKDRVTG----QH 53
Query: 222 KKFAFVEMRTVEEASNAMALDGII-FEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
+ + FVE + E+A A+ + +I G +RV + + +N NL++ A
Sbjct: 54 QGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNK-------------NLDVGA 100
Query: 281 VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYG 339
+F+G L E + + +FG L +++D DTGNSKGY
Sbjct: 101 ---------------NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYA 145
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
F + +D A A+NG + ++ +TV A
Sbjct: 146 FINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%)
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
+A+G I V+VGGL +E + EL G + + KDR TG +GYGF
Sbjct: 1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 60
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
+ D A +N +K+ K + V +A+A
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVNKASA 91
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa
subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVGG+PY TE + + +G + +LV+D+ TG SKG+ F Y+D T +A L
Sbjct: 38 VFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 357 NGLKM 361
NG K+
Sbjct: 98 NGAKV 102
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1
Length = 360
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 43/79 (54%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+ V LP T+ ++K L S G + LV+D+ TG S GYGF Y DP + A L
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 357 NGLKMGDKTLTVRRATASS 375
NGL++ KT+ V A SS
Sbjct: 101 NGLRLQTKTIKVSYARPSS 119
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+FV L E+ + ++ FG + +++D +T KG+GF + +A A+L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 357 NGLKMGDKTLTVRRAT 372
NG ++GD+ L V T
Sbjct: 339 NGYRLGDRVLQVSFKT 354
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
++V GLP T+ ++++L +G + ++ D+ TG S+G GF + + A L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQ 391
NG K T + A++ KT Q +IL+Q Q
Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQ-AILSQLYQ 220
>sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2
Length = 375
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 43/80 (53%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+ V LP T+ ++K L S G + LV+D+ TG S GYGF Y DP + A L
Sbjct: 69 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 128
Query: 357 NGLKMGDKTLTVRRATASSG 376
NGL++ KT+ V A SS
Sbjct: 129 NGLRLQTKTIKVSYARPSSA 148
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+FV L E+ + ++ FG + +++D +T KG+GF + +A A+L
Sbjct: 294 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 353
Query: 357 NGLKMGDKTLTVRRATASS 375
NG ++GD+ L V T+ +
Sbjct: 354 NGYRLGDRVLQVSFKTSKT 372
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
++V GLP T+ ++++L +G + ++ D+ TG S+G GF + + A L
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 214
Query: 357 NGLKMGDKT--LTVRRATASSGQSKTEQESILAQAQQ 391
NG K T +TV+ A + S+ +IL+Q Q
Sbjct: 215 NGQKPPGATEPITVKFA---NNPSQKVNHTILSQLYQ 248
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 43/79 (54%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+ V LP T+ ++K L S G + LV+D+ TG S GYGF Y DP + A L
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 357 NGLKMGDKTLTVRRATASS 375
NGL++ KT+ V A SS
Sbjct: 101 NGLRLQTKTIKVSYARPSS 119
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+FV L E+ + ++ FG + +++D +T KG+GF + +A A+L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 357 NGLKMGDKTLTVRRAT 372
NG ++GD+ L V T
Sbjct: 338 NGYRLGDRVLQVSFKT 353
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
++V GLP T+ ++++L +G + ++ D+ TG S+G GF + + A L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQ 391
NG K T + A++ KT Q +IL+Q Q
Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQ-AILSQLYQ 220
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
Length = 359
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 43/79 (54%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+ V LP T+ ++K L S G + LV+D+ TG S GYGF Y DP + A L
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 357 NGLKMGDKTLTVRRATASS 375
NGL++ KT+ V A SS
Sbjct: 101 NGLRLQTKTIKVSYARPSS 119
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+FV L E+ + ++ FG + +++D +T KG+GF + +A A+L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 357 NGLKMGDKTLTVRRAT 372
NG ++GD+ L V T
Sbjct: 338 NGYRLGDRVLQVSFKT 353
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
++V GLP T+ ++++L +G + ++ D+ TG S+G GF + + A L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 357 NGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQ 391
NG K T + A++ KT Q +IL+Q Q
Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQ-AILSQLYQ 220
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,208,828
Number of Sequences: 539616
Number of extensions: 7425434
Number of successful extensions: 37163
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 582
Number of HSP's that attempted gapping in prelim test: 26184
Number of HSP's gapped (non-prelim): 6155
length of query: 435
length of database: 191,569,459
effective HSP length: 120
effective length of query: 315
effective length of database: 126,815,539
effective search space: 39946894785
effective search space used: 39946894785
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)