Query 013837
Match_columns 435
No_of_seqs 347 out of 3980
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 07:53:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.7E-45 3.7E-50 372.7 36.5 256 165-432 166-421 (509)
2 TIGR01622 SF-CC1 splicing fact 100.0 4.1E-39 8.8E-44 321.7 27.1 181 170-373 85-265 (457)
3 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.3E-32 2.9E-37 278.6 29.1 194 173-373 294-501 (509)
4 TIGR01659 sex-lethal sex-letha 100.0 3.1E-32 6.8E-37 256.6 19.9 171 170-375 103-276 (346)
5 KOG0147 Transcriptional coacti 100.0 1.9E-32 4.1E-37 257.2 13.5 186 169-375 174-359 (549)
6 KOG0120 Splicing factor U2AF, 100.0 1.2E-31 2.6E-36 255.5 15.4 298 99-432 104-411 (500)
7 TIGR01645 half-pint poly-U bin 100.0 6.8E-31 1.5E-35 259.7 18.8 182 170-375 103-285 (612)
8 TIGR01622 SF-CC1 splicing fact 100.0 1.7E-29 3.7E-34 252.4 22.8 189 174-372 186-446 (457)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.3E-29 7.2E-34 242.0 20.6 197 173-375 88-350 (352)
10 KOG0148 Apoptosis-promoting RN 100.0 4.4E-29 9.6E-34 214.1 14.8 182 174-380 62-244 (321)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2E-28 4.4E-33 236.6 17.9 168 173-375 2-172 (352)
12 KOG0144 RNA-binding protein CU 100.0 3.1E-28 6.7E-33 221.6 15.2 174 169-377 29-209 (510)
13 KOG0117 Heterogeneous nuclear 100.0 4.6E-28 9.9E-33 221.6 13.4 199 166-379 75-336 (506)
14 TIGR01628 PABP-1234 polyadenyl 99.9 1.1E-26 2.5E-31 237.4 17.6 165 176-374 2-167 (562)
15 TIGR01648 hnRNP-R-Q heterogene 99.9 1.9E-26 4.1E-31 228.1 18.2 190 171-375 55-308 (578)
16 TIGR01628 PABP-1234 polyadenyl 99.9 2.7E-26 5.9E-31 234.6 19.7 184 172-374 176-364 (562)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 7.5E-26 1.6E-30 225.6 20.9 170 173-375 1-175 (481)
18 KOG0131 Splicing factor 3b, su 99.9 7E-27 1.5E-31 189.4 10.6 170 173-376 8-179 (203)
19 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 9.9E-25 2.1E-29 217.6 22.7 190 171-374 272-480 (481)
20 KOG0145 RNA-binding protein EL 99.9 2.4E-25 5.2E-30 190.0 15.1 168 172-374 39-209 (360)
21 KOG0145 RNA-binding protein EL 99.9 8.8E-25 1.9E-29 186.5 17.9 197 172-374 125-358 (360)
22 KOG0127 Nucleolar protein fibr 99.9 1.6E-25 3.5E-30 209.4 14.3 191 175-376 6-198 (678)
23 KOG0147 Transcriptional coacti 99.9 5.3E-25 1.2E-29 207.2 16.8 186 175-371 279-525 (549)
24 KOG0127 Nucleolar protein fibr 99.9 1.2E-24 2.5E-29 203.7 17.3 191 173-375 116-379 (678)
25 KOG0109 RNA-binding protein LA 99.9 2E-25 4.3E-30 193.6 9.1 148 175-375 3-151 (346)
26 KOG0124 Polypyrimidine tract-b 99.9 3.4E-24 7.4E-29 191.2 7.5 182 170-375 109-291 (544)
27 KOG0110 RNA-binding protein (R 99.9 3.7E-22 8E-27 193.1 12.1 174 175-375 516-694 (725)
28 KOG0123 Polyadenylate-binding 99.9 1.9E-21 4E-26 184.5 14.4 151 176-375 3-154 (369)
29 KOG0148 Apoptosis-promoting RN 99.9 1.4E-21 2.9E-26 168.3 10.2 141 171-375 3-143 (321)
30 KOG0120 Splicing factor U2AF, 99.9 1.3E-20 2.9E-25 180.3 16.3 187 171-372 286-490 (500)
31 KOG0146 RNA-binding protein ET 99.8 4E-21 8.7E-26 164.9 10.3 83 293-375 284-366 (371)
32 KOG4205 RNA-binding protein mu 99.8 1.2E-21 2.5E-26 179.1 7.4 175 173-377 5-179 (311)
33 KOG0144 RNA-binding protein CU 99.8 4.1E-21 8.9E-26 175.4 9.7 81 294-374 424-504 (510)
34 KOG0123 Polyadenylate-binding 99.8 2.6E-20 5.6E-25 176.7 14.9 205 155-397 59-264 (369)
35 KOG4206 Spliceosomal protein s 99.8 1E-19 2.2E-24 154.2 15.7 185 174-372 9-220 (221)
36 TIGR01645 half-pint poly-U bin 99.8 4.9E-19 1.1E-23 175.8 19.1 80 173-258 203-283 (612)
37 KOG0105 Alternative splicing f 99.8 3.7E-18 8.1E-23 138.9 15.1 174 172-370 4-186 (241)
38 PLN03134 glycine-rich RNA-bind 99.8 1.4E-18 3E-23 143.7 12.6 85 292-376 32-116 (144)
39 KOG4211 Splicing factor hnRNP- 99.7 2.5E-17 5.5E-22 153.7 14.1 170 173-371 9-179 (510)
40 KOG0110 RNA-binding protein (R 99.7 1.3E-16 2.8E-21 155.0 15.4 191 170-372 381-596 (725)
41 KOG1190 Polypyrimidine tract-b 99.7 2.4E-16 5.2E-21 143.5 13.6 232 175-430 151-424 (492)
42 KOG1457 RNA binding protein (c 99.7 1.3E-15 2.8E-20 127.9 15.0 179 170-361 30-273 (284)
43 PF00076 RRM_1: RNA recognitio 99.7 7E-16 1.5E-20 112.0 10.1 70 297-367 1-70 (70)
44 TIGR01659 sex-lethal sex-letha 99.7 4.3E-16 9.4E-21 147.3 11.4 84 291-374 104-187 (346)
45 KOG0122 Translation initiation 99.7 5.9E-16 1.3E-20 132.0 9.7 82 293-374 188-269 (270)
46 KOG0106 Alternative splicing f 99.6 3.1E-16 6.7E-21 134.7 7.8 166 175-371 2-168 (216)
47 KOG4212 RNA-binding protein hn 99.6 4.8E-15 1E-19 136.0 14.2 191 172-370 42-290 (608)
48 KOG0124 Polypyrimidine tract-b 99.6 5E-15 1.1E-19 132.9 13.2 199 167-371 203-532 (544)
49 KOG1190 Polypyrimidine tract-b 99.6 4.5E-14 9.8E-19 128.8 18.4 184 174-373 297-490 (492)
50 KOG0107 Alternative splicing f 99.6 2.1E-15 4.5E-20 122.3 8.3 78 293-375 9-86 (195)
51 KOG1548 Transcription elongati 99.6 1.5E-14 3.3E-19 129.4 14.6 197 172-374 132-352 (382)
52 KOG4207 Predicted splicing fac 99.6 1.8E-15 3.9E-20 125.6 7.6 86 290-375 9-94 (256)
53 PF14259 RRM_6: RNA recognitio 99.6 5.1E-15 1.1E-19 107.4 9.1 70 297-367 1-70 (70)
54 KOG0125 Ataxin 2-binding prote 99.6 6.6E-15 1.4E-19 130.7 10.6 86 288-375 90-175 (376)
55 KOG0126 Predicted RNA-binding 99.6 3.5E-16 7.5E-21 127.3 1.9 80 294-373 35-114 (219)
56 TIGR01648 hnRNP-R-Q heterogene 99.6 1.1E-14 2.5E-19 144.7 12.9 117 231-372 18-136 (578)
57 PLN03134 glycine-rich RNA-bind 99.6 3.8E-15 8.3E-20 123.2 7.9 88 167-260 27-115 (144)
58 KOG0121 Nuclear cap-binding pr 99.6 5.7E-15 1.2E-19 113.2 7.5 80 292-371 34-113 (153)
59 KOG0113 U1 small nuclear ribon 99.6 1.7E-14 3.7E-19 126.6 10.7 82 292-373 99-180 (335)
60 PLN03120 nucleic acid binding 99.5 3.3E-14 7.2E-19 125.5 10.8 75 294-372 4-78 (260)
61 KOG0114 Predicted RNA-binding 99.5 3.4E-14 7.5E-19 104.7 8.6 81 291-374 15-95 (124)
62 KOG0149 Predicted RNA-binding 99.5 1.6E-14 3.6E-19 122.9 7.6 81 293-374 11-91 (247)
63 KOG0130 RNA-binding protein RB 99.5 2E-14 4.3E-19 111.2 6.5 81 295-375 73-153 (170)
64 KOG0131 Splicing factor 3b, su 99.5 2.9E-14 6.2E-19 116.4 6.6 82 291-372 6-87 (203)
65 KOG0111 Cyclophilin-type pepti 99.5 1.2E-14 2.7E-19 121.7 4.2 84 292-375 8-91 (298)
66 PLN03213 repressor of silencin 99.5 8.6E-14 1.9E-18 129.8 10.2 78 293-374 9-88 (759)
67 KOG0132 RNA polymerase II C-te 99.5 1.8E-13 4E-18 134.2 12.3 78 170-259 417-495 (894)
68 smart00362 RRM_2 RNA recogniti 99.5 2.8E-13 6E-18 98.3 9.7 72 296-369 1-72 (72)
69 smart00360 RRM RNA recognition 99.5 3.4E-13 7.3E-18 97.5 9.0 71 299-369 1-71 (71)
70 PLN03121 nucleic acid binding 99.5 4.3E-13 9.3E-18 116.5 10.8 75 294-372 5-79 (243)
71 KOG0117 Heterogeneous nuclear 99.5 4.4E-13 9.5E-18 123.9 11.2 84 292-375 81-165 (506)
72 KOG1365 RNA-binding protein Fu 99.4 1.3E-13 2.9E-18 124.7 6.6 191 175-371 162-359 (508)
73 KOG4212 RNA-binding protein hn 99.4 2.2E-12 4.8E-17 118.7 14.6 74 293-371 535-608 (608)
74 KOG4206 Spliceosomal protein s 99.4 2.2E-13 4.7E-18 116.0 7.3 81 292-375 7-91 (221)
75 KOG1456 Heterogeneous nuclear 99.4 3.7E-12 8E-17 115.1 14.6 165 172-375 29-200 (494)
76 COG0724 RNA-binding proteins ( 99.4 1E-12 2.2E-17 122.7 11.7 169 174-354 115-285 (306)
77 KOG0121 Nuclear cap-binding pr 99.4 3E-13 6.5E-18 103.8 6.4 85 168-260 30-117 (153)
78 PLN03120 nucleic acid binding 99.4 6.6E-13 1.4E-17 117.4 9.1 78 174-260 4-81 (260)
79 cd00590 RRM RRM (RNA recogniti 99.4 3E-12 6.5E-17 93.3 10.5 74 296-370 1-74 (74)
80 KOG0108 mRNA cleavage and poly 99.4 6.3E-13 1.4E-17 127.4 8.6 81 295-375 19-99 (435)
81 KOG0105 Alternative splicing f 99.4 7.1E-13 1.5E-17 108.3 7.1 79 293-374 5-83 (241)
82 PF13893 RRM_5: RNA recognitio 99.4 1.8E-12 3.9E-17 89.3 7.9 56 311-371 1-56 (56)
83 smart00361 RRM_1 RNA recogniti 99.4 2.7E-12 5.8E-17 92.7 8.9 61 308-368 2-69 (70)
84 COG0724 RNA-binding proteins ( 99.4 3.4E-12 7.5E-17 119.1 10.6 80 294-373 115-194 (306)
85 PF00076 RRM_1: RNA recognitio 99.4 1.8E-12 3.8E-17 93.9 6.5 68 177-252 1-70 (70)
86 KOG0125 Ataxin 2-binding prote 99.3 4.3E-12 9.2E-17 113.0 9.7 84 168-260 90-175 (376)
87 KOG0129 Predicted RNA-binding 99.3 1.2E-11 2.5E-16 117.0 12.6 173 171-355 256-432 (520)
88 KOG0149 Predicted RNA-binding 99.3 1.2E-12 2.7E-17 111.5 4.9 80 173-258 11-90 (247)
89 KOG0109 RNA-binding protein LA 99.3 1.2E-12 2.6E-17 114.6 4.5 73 295-375 3-75 (346)
90 PLN03121 nucleic acid binding 99.3 6.4E-12 1.4E-16 109.2 8.7 79 173-260 4-82 (243)
91 KOG0107 Alternative splicing f 99.3 3.4E-12 7.3E-17 103.8 6.4 75 173-259 9-85 (195)
92 KOG0122 Translation initiation 99.3 3.7E-12 8E-17 109.0 6.2 82 172-259 187-269 (270)
93 KOG0126 Predicted RNA-binding 99.3 1.9E-13 4.1E-18 111.5 -2.9 88 168-261 29-117 (219)
94 KOG1456 Heterogeneous nuclear 99.3 1.3E-10 2.8E-15 105.3 14.8 187 173-375 119-364 (494)
95 KOG4307 RNA binding protein RB 99.3 7E-11 1.5E-15 114.8 14.0 197 171-376 308-516 (944)
96 KOG4211 Splicing factor hnRNP- 99.3 3.8E-11 8.2E-16 112.9 10.8 190 173-371 102-355 (510)
97 KOG0132 RNA polymerase II C-te 99.2 8.3E-11 1.8E-15 115.9 13.3 75 295-375 422-496 (894)
98 KOG0114 Predicted RNA-binding 99.2 5.2E-11 1.1E-15 88.1 8.4 76 173-260 17-96 (124)
99 PF14259 RRM_6: RNA recognitio 99.2 1.7E-11 3.7E-16 88.7 5.6 64 177-252 1-70 (70)
100 KOG4208 Nucleolar RNA-binding 99.2 6.9E-11 1.5E-15 99.1 8.1 83 292-374 47-130 (214)
101 KOG0415 Predicted peptidyl pro 99.2 5.3E-11 1.1E-15 107.0 7.3 83 291-373 236-318 (479)
102 KOG0130 RNA-binding protein RB 99.2 2.2E-11 4.8E-16 94.5 4.2 84 170-259 68-152 (170)
103 KOG4207 Predicted splicing fac 99.1 5E-11 1.1E-15 99.5 5.6 79 173-257 12-91 (256)
104 smart00362 RRM_2 RNA recogniti 99.1 2.4E-10 5.1E-15 82.6 8.6 67 176-254 1-72 (72)
105 KOG0113 U1 small nuclear ribon 99.1 8.7E-11 1.9E-15 103.5 7.2 79 172-256 99-178 (335)
106 PLN03213 repressor of silencin 99.1 8.1E-11 1.7E-15 110.2 7.3 76 173-258 9-87 (759)
107 KOG0108 mRNA cleavage and poly 99.1 3E-11 6.5E-16 115.9 4.6 81 175-261 19-100 (435)
108 KOG0146 RNA-binding protein ET 99.1 2.9E-10 6.4E-15 98.5 9.7 80 293-373 18-100 (371)
109 KOG0112 Large RNA-binding prot 99.1 1.1E-10 2.3E-15 117.1 5.8 165 168-376 366-533 (975)
110 KOG0111 Cyclophilin-type pepti 99.1 6.4E-11 1.4E-15 99.6 3.1 83 172-260 8-91 (298)
111 KOG4210 Nuclear localization s 99.1 1.1E-10 2.5E-15 107.1 4.6 178 172-375 86-265 (285)
112 KOG1548 Transcription elongati 99.1 1E-09 2.3E-14 98.8 10.0 83 292-375 132-222 (382)
113 KOG0226 RNA-binding proteins [ 99.0 5.7E-10 1.2E-14 96.2 7.8 133 218-373 136-269 (290)
114 KOG4454 RNA binding protein (R 99.0 4E-11 8.8E-16 100.9 -0.1 137 171-362 6-151 (267)
115 KOG0128 RNA-binding protein SA 99.0 2.5E-11 5.3E-16 121.0 -3.0 151 171-373 664-814 (881)
116 KOG4676 Splicing factor, argin 99.0 1.5E-10 3.3E-15 105.5 2.2 188 176-371 9-223 (479)
117 cd00590 RRM RRM (RNA recogniti 99.0 2.8E-09 6.1E-14 77.3 8.6 68 176-255 1-74 (74)
118 PF13893 RRM_5: RNA recognitio 98.9 1.9E-09 4.1E-14 74.1 5.7 54 191-256 1-56 (56)
119 KOG4661 Hsp27-ERE-TATA-binding 98.9 6.5E-09 1.4E-13 99.2 11.0 84 292-375 403-486 (940)
120 KOG0153 Predicted RNA-binding 98.9 4.3E-09 9.3E-14 94.9 9.0 78 290-373 224-302 (377)
121 KOG1365 RNA-binding protein Fu 98.9 4.7E-09 1E-13 95.6 9.3 180 171-371 57-240 (508)
122 smart00360 RRM RNA recognition 98.9 6E-09 1.3E-13 74.8 7.5 70 179-254 1-71 (71)
123 PF04059 RRM_2: RNA recognitio 98.9 1.8E-08 3.9E-13 76.2 9.6 80 295-374 2-87 (97)
124 KOG4205 RNA-binding protein mu 98.9 3.1E-09 6.7E-14 97.9 5.5 86 293-379 5-90 (311)
125 KOG0533 RRM motif-containing p 98.8 1.6E-08 3.5E-13 89.4 9.3 83 292-375 81-163 (243)
126 KOG1457 RNA binding protein (c 98.8 2.5E-08 5.5E-13 84.5 9.7 85 291-375 31-119 (284)
127 KOG0153 Predicted RNA-binding 98.8 1.4E-08 3E-13 91.7 7.1 78 169-258 223-302 (377)
128 KOG4454 RNA binding protein (R 98.8 2.6E-09 5.7E-14 90.2 2.2 80 292-373 7-86 (267)
129 smart00361 RRM_1 RNA recogniti 98.8 2.4E-08 5.2E-13 71.9 6.7 61 188-253 2-69 (70)
130 KOG4660 Protein Mei2, essentia 98.8 2.3E-08 4.9E-13 96.0 8.3 178 169-374 70-250 (549)
131 KOG0415 Predicted peptidyl pro 98.8 7.5E-09 1.6E-13 93.4 4.5 81 172-258 237-318 (479)
132 KOG0116 RasGAP SH3 binding pro 98.7 5.6E-08 1.2E-12 93.1 7.5 79 295-374 289-367 (419)
133 KOG4661 Hsp27-ERE-TATA-binding 98.6 1E-07 2.2E-12 91.2 8.5 83 171-259 402-485 (940)
134 KOG4209 Splicing factor RNPS1, 98.6 4.2E-08 9.2E-13 87.2 5.6 82 292-374 99-180 (231)
135 KOG4208 Nucleolar RNA-binding 98.6 4.4E-08 9.6E-13 82.4 3.9 78 173-256 48-127 (214)
136 KOG0106 Alternative splicing f 98.5 9.3E-08 2E-12 82.7 4.4 71 295-373 2-72 (216)
137 KOG4660 Protein Mei2, essentia 98.5 8.2E-08 1.8E-12 92.2 4.4 71 292-367 73-143 (549)
138 KOG2193 IGF-II mRNA-binding pr 98.5 1.2E-08 2.6E-13 94.1 -2.2 150 175-371 2-154 (584)
139 KOG1995 Conserved Zn-finger pr 98.5 1.7E-07 3.7E-12 85.5 4.9 84 292-375 64-155 (351)
140 KOG0151 Predicted splicing reg 98.4 5.3E-07 1.1E-11 88.7 7.0 84 291-374 171-257 (877)
141 KOG0533 RRM motif-containing p 98.3 4.2E-06 9.1E-11 74.3 10.2 84 170-260 79-163 (243)
142 KOG0116 RasGAP SH3 binding pro 98.3 1.1E-06 2.4E-11 84.3 6.6 77 172-256 286-364 (419)
143 PF04059 RRM_2: RNA recognitio 98.2 4.2E-06 9E-11 63.4 6.7 79 175-257 2-85 (97)
144 PF11608 Limkain-b1: Limkain b 98.2 7.8E-06 1.7E-10 58.8 7.1 69 296-374 4-77 (90)
145 KOG4209 Splicing factor RNPS1, 98.1 1.4E-06 2.9E-11 77.6 3.0 83 169-257 96-178 (231)
146 KOG0151 Predicted splicing reg 98.1 7.3E-06 1.6E-10 80.9 6.4 85 171-258 171-256 (877)
147 KOG4307 RNA binding protein RB 98.1 1.4E-05 3.1E-10 78.8 8.3 77 294-370 867-943 (944)
148 KOG4849 mRNA cleavage factor I 98.0 4.8E-06 1E-10 75.4 4.1 79 295-373 81-161 (498)
149 PF08777 RRM_3: RNA binding mo 98.0 8.7E-06 1.9E-10 63.2 5.0 71 295-371 2-77 (105)
150 KOG0226 RNA-binding proteins [ 98.0 8.5E-06 1.8E-10 70.9 4.9 78 172-255 188-266 (290)
151 PF06495 Transformer: Fruit fl 98.0 6.7E-05 1.5E-09 61.4 9.4 16 111-126 116-131 (182)
152 KOG1996 mRNA splicing factor [ 98.0 2.4E-05 5.3E-10 69.3 7.2 79 295-373 282-366 (378)
153 PF11608 Limkain-b1: Limkain b 98.0 7.3E-05 1.6E-09 53.8 8.2 71 176-257 4-75 (90)
154 KOG2314 Translation initiation 97.9 4.2E-05 9.1E-10 73.8 8.5 77 294-371 58-141 (698)
155 KOG0128 RNA-binding protein SA 97.8 5.8E-07 1.3E-11 90.5 -5.9 165 172-362 569-735 (881)
156 COG5175 MOT2 Transcriptional r 97.7 7.4E-05 1.6E-09 67.6 6.3 81 294-374 114-203 (480)
157 KOG1995 Conserved Zn-finger pr 97.7 3.6E-05 7.9E-10 70.6 4.4 89 171-259 63-154 (351)
158 KOG2202 U2 snRNP splicing fact 97.7 1.9E-05 4.1E-10 69.1 2.1 64 309-373 83-147 (260)
159 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00025 5.5E-09 54.1 7.6 77 294-372 6-90 (100)
160 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00014 3.1E-09 48.7 5.3 52 295-353 2-53 (53)
161 KOG2193 IGF-II mRNA-binding pr 97.6 6.5E-05 1.4E-09 70.0 4.7 102 295-403 2-105 (584)
162 KOG0115 RNA-binding protein p5 97.5 0.00024 5.2E-09 62.2 6.1 101 234-371 6-111 (275)
163 KOG1855 Predicted RNA-binding 97.4 0.00015 3.3E-09 67.8 4.2 79 292-370 229-320 (484)
164 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00044 9.5E-09 46.3 5.2 52 175-239 2-53 (53)
165 PF08777 RRM_3: RNA binding mo 97.3 0.00048 1E-08 53.5 5.7 68 175-254 2-75 (105)
166 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.00091 2E-08 51.1 6.7 83 173-256 5-89 (100)
167 PF08952 DUF1866: Domain of un 97.2 0.0018 3.9E-08 52.5 7.2 57 309-374 51-107 (146)
168 KOG2416 Acinus (induces apopto 97.1 0.00039 8.5E-09 67.8 3.5 76 292-373 442-521 (718)
169 KOG3152 TBP-binding protein, a 97.1 0.00041 8.8E-09 60.8 3.0 73 293-365 73-157 (278)
170 PF08675 RNA_bind: RNA binding 96.9 0.0042 9.1E-08 44.9 6.6 54 295-357 10-63 (87)
171 COG5175 MOT2 Transcriptional r 96.9 0.0014 3E-08 59.6 4.7 75 175-257 115-201 (480)
172 KOG2135 Proteins containing th 96.8 0.0053 1.1E-07 58.6 8.4 77 170-258 368-445 (526)
173 KOG2135 Proteins containing th 96.8 0.0065 1.4E-07 58.0 8.7 71 297-374 375-446 (526)
174 KOG0112 Large RNA-binding prot 96.8 0.00022 4.7E-09 72.8 -1.2 80 292-372 370-449 (975)
175 KOG2591 c-Mpl binding protein, 96.7 0.018 4E-07 56.1 10.9 70 294-370 175-248 (684)
176 KOG1855 Predicted RNA-binding 96.6 0.0011 2.4E-08 62.3 2.4 72 171-242 228-306 (484)
177 PF10309 DUF2414: Protein of u 96.4 0.025 5.4E-07 38.8 7.2 54 294-356 5-62 (62)
178 KOG2416 Acinus (induces apopto 96.3 0.0025 5.4E-08 62.4 2.5 75 172-257 442-520 (718)
179 KOG3152 TBP-binding protein, a 96.0 0.0044 9.5E-08 54.5 2.3 78 173-250 73-157 (278)
180 KOG4574 RNA-binding protein (c 95.9 0.0025 5.5E-08 64.8 0.8 75 296-376 300-376 (1007)
181 KOG4210 Nuclear localization s 95.9 0.0026 5.6E-08 58.8 0.5 81 173-259 183-264 (285)
182 KOG4849 mRNA cleavage factor I 95.9 0.01 2.2E-07 54.4 4.2 78 173-254 79-157 (498)
183 PF08952 DUF1866: Domain of un 95.9 0.014 3.1E-07 47.4 4.6 53 190-256 52-104 (146)
184 KOG0129 Predicted RNA-binding 95.8 0.015 3.2E-07 56.4 5.2 79 170-254 366-449 (520)
185 PF03467 Smg4_UPF3: Smg-4/UPF3 95.7 0.017 3.7E-07 49.5 4.9 82 294-375 7-99 (176)
186 KOG4285 Mitotic phosphoprotein 95.7 0.098 2.1E-06 47.3 9.5 73 294-374 197-270 (350)
187 KOG2068 MOT2 transcription fac 95.6 0.0043 9.3E-08 57.0 0.8 80 295-375 78-164 (327)
188 KOG2548 SWAP mRNA splicing reg 95.6 0.0048 1E-07 59.5 1.0 15 181-195 556-570 (653)
189 PF07576 BRAP2: BRCA1-associat 95.4 0.2 4.4E-06 39.1 9.4 68 294-363 13-81 (110)
190 KOG2314 Translation initiation 95.3 0.024 5.2E-07 55.4 4.8 79 172-257 56-142 (698)
191 PF04847 Calcipressin: Calcipr 95.3 0.058 1.3E-06 46.4 6.6 62 307-374 8-71 (184)
192 KOG3263 Nucleic acid binding p 95.2 0.0049 1.1E-07 50.4 -0.1 11 189-199 141-151 (196)
193 PF15023 DUF4523: Protein of u 95.1 0.13 2.9E-06 41.2 7.6 73 291-371 83-159 (166)
194 KOG2202 U2 snRNP splicing fact 95.1 0.017 3.7E-07 51.0 2.8 63 189-258 83-147 (260)
195 PF11767 SET_assoc: Histone ly 94.7 0.2 4.3E-06 35.1 6.8 55 305-368 11-65 (66)
196 KOG2253 U1 snRNP complex, subu 94.3 0.048 1E-06 54.6 4.1 69 172-255 38-107 (668)
197 KOG4285 Mitotic phosphoprotein 94.2 0.3 6.5E-06 44.3 8.4 73 174-259 197-270 (350)
198 PF03880 DbpA: DbpA RNA bindin 93.3 0.46 1E-05 34.2 6.8 59 304-371 11-74 (74)
199 KOG1996 mRNA splicing factor [ 92.8 0.29 6.3E-06 44.2 6.0 62 188-257 300-365 (378)
200 KOG2253 U1 snRNP complex, subu 92.7 0.13 2.8E-06 51.6 4.1 70 292-370 38-107 (668)
201 KOG0804 Cytoplasmic Zn-finger 92.4 0.59 1.3E-05 44.9 7.8 68 294-363 74-142 (493)
202 KOG2891 Surface glycoprotein [ 92.3 0.15 3.3E-06 45.4 3.7 80 293-372 148-266 (445)
203 PF10309 DUF2414: Protein of u 91.6 1.3 2.7E-05 30.6 6.7 55 174-239 5-59 (62)
204 KOG0115 RNA-binding protein p5 90.2 1.1 2.3E-05 39.9 6.7 74 175-255 32-110 (275)
205 PF03467 Smg4_UPF3: Smg-4/UPF3 89.6 0.13 2.8E-06 44.1 0.7 67 173-248 6-82 (176)
206 KOG0804 Cytoplasmic Zn-finger 88.6 2.4 5.2E-05 40.9 8.2 67 174-248 74-142 (493)
207 PF11767 SET_assoc: Histone ly 88.3 2.1 4.5E-05 30.0 5.8 54 185-253 11-65 (66)
208 PF08675 RNA_bind: RNA binding 87.6 0.95 2.1E-05 33.0 3.8 51 175-240 10-60 (87)
209 PF07292 NID: Nmi/IFP 35 domai 87.4 0.57 1.2E-05 34.8 2.7 77 225-330 1-81 (88)
210 KOG2318 Uncharacterized conser 87.2 2.7 5.9E-05 41.9 7.9 81 291-371 171-305 (650)
211 PF04847 Calcipressin: Calcipr 84.7 1.9 4.1E-05 37.2 5.0 59 188-258 9-70 (184)
212 KOG4410 5-formyltetrahydrofola 84.5 2.9 6.3E-05 37.8 6.1 48 175-233 331-378 (396)
213 KOG1882 Transcriptional regula 84.1 0.9 2E-05 40.0 2.7 12 22-33 15-26 (293)
214 KOG2591 c-Mpl binding protein, 83.7 1.5 3.2E-05 43.4 4.3 70 172-252 173-245 (684)
215 PF07576 BRAP2: BRCA1-associat 82.9 5.3 0.00012 31.2 6.4 66 175-248 14-81 (110)
216 PF15023 DUF4523: Protein of u 81.6 6.8 0.00015 31.8 6.5 73 172-258 84-161 (166)
217 KOG4410 5-formyltetrahydrofola 78.7 9.7 0.00021 34.5 7.2 48 294-347 330-378 (396)
218 KOG4574 RNA-binding protein (c 78.3 3.7 8.1E-05 42.8 5.2 73 174-258 298-373 (1007)
219 KOG2068 MOT2 transcription fac 77.5 0.69 1.5E-05 42.9 -0.2 74 175-257 78-161 (327)
220 PF14111 DUF4283: Domain of un 76.4 1.1 2.4E-05 37.2 0.8 119 176-327 17-138 (153)
221 PF07530 PRE_C2HC: Associated 75.6 5.8 0.00013 27.9 4.1 63 309-374 2-65 (68)
222 PF10567 Nab6_mRNP_bdg: RNA-re 73.9 8.9 0.00019 35.1 5.8 83 292-374 13-108 (309)
223 KOG4019 Calcineurin-mediated s 73.7 4.4 9.4E-05 34.3 3.6 75 294-374 10-90 (193)
224 KOG2812 Uncharacterized conser 72.7 11 0.00023 35.4 6.1 16 339-354 364-379 (426)
225 PF03880 DbpA: DbpA RNA bindin 70.4 9.4 0.0002 27.3 4.3 61 185-255 12-73 (74)
226 KOG2318 Uncharacterized conser 69.0 29 0.00062 35.0 8.5 71 171-249 171-296 (650)
227 PF03468 XS: XS domain; Inter 68.1 8.2 0.00018 30.5 3.9 49 296-347 10-67 (116)
228 PF02956 TT_ORF1: TT viral orf 67.9 4.8 0.0001 40.9 3.1 8 364-371 378-385 (525)
229 smart00596 PRE_C2HC PRE_C2HC d 66.5 13 0.00027 26.2 4.0 62 309-373 2-64 (69)
230 KOG4483 Uncharacterized conser 64.3 29 0.00063 33.2 7.2 57 292-355 389-446 (528)
231 KOG4483 Uncharacterized conser 58.6 26 0.00057 33.5 5.8 58 172-241 389-446 (528)
232 PF15519 RBM39linker: linker b 52.6 8.5 0.00018 27.6 1.4 17 418-434 52-68 (73)
233 PF10567 Nab6_mRNP_bdg: RNA-re 51.7 2E+02 0.0044 26.6 10.8 181 172-357 13-212 (309)
234 KOG2295 C2H2 Zn-finger protein 51.1 2.2 4.9E-05 42.2 -2.3 72 292-363 229-300 (648)
235 KOG4365 Uncharacterized conser 49.8 2.6 5.5E-05 40.5 -2.1 78 295-373 4-81 (572)
236 KOG1295 Nonsense-mediated deca 49.0 17 0.00037 34.6 3.1 65 173-248 6-79 (376)
237 KOG3869 Uncharacterized conser 48.0 13 0.00029 35.6 2.2 13 186-198 361-373 (450)
238 KOG1295 Nonsense-mediated deca 46.2 21 0.00046 34.0 3.3 68 294-361 7-77 (376)
239 PRK14548 50S ribosomal protein 46.0 1.2E+02 0.0025 22.5 6.4 57 297-356 23-81 (84)
240 COG5638 Uncharacterized conser 45.3 86 0.0019 30.2 7.0 81 291-371 143-295 (622)
241 KOG4019 Calcineurin-mediated s 42.7 1.5E+02 0.0033 25.4 7.3 80 173-260 9-91 (193)
242 TIGR03636 L23_arch archaeal ri 40.0 1.4E+02 0.0031 21.6 6.5 57 297-356 16-74 (77)
243 PTZ00191 60S ribosomal protein 38.2 1.4E+02 0.003 24.6 6.3 56 296-354 83-140 (145)
244 PRK11901 hypothetical protein; 38.0 69 0.0015 30.1 5.2 58 295-357 246-305 (327)
245 PF15513 DUF4651: Domain of un 37.1 92 0.002 21.4 4.4 18 309-326 9-26 (62)
246 KOG4008 rRNA processing protei 36.1 37 0.00079 30.2 2.9 34 292-325 38-71 (261)
247 PF14893 PNMA: PNMA 34.7 34 0.00074 32.5 2.8 80 290-374 14-97 (331)
248 KOG4008 rRNA processing protei 33.7 66 0.0014 28.6 4.1 31 171-201 37-67 (261)
249 PF03439 Spt5-NGN: Early trans 33.0 82 0.0018 23.1 4.1 27 335-361 43-69 (84)
250 COG5193 LHP1 La protein, small 27.3 22 0.00047 34.1 0.2 60 295-354 175-244 (438)
251 PF11823 DUF3343: Protein of u 25.8 89 0.0019 22.1 3.1 22 338-359 3-24 (73)
252 KOG3424 40S ribosomal protein 25.6 3E+02 0.0066 21.7 6.0 45 305-350 34-83 (132)
253 KOG4213 RNA-binding protein La 25.5 81 0.0018 26.8 3.1 70 295-370 112-183 (205)
254 PF08156 NOP5NT: NOP5NT (NUC12 24.6 24 0.00052 24.7 -0.1 39 309-357 27-65 (67)
255 PF08734 GYD: GYD domain; Int 24.1 3.1E+02 0.0067 20.4 6.7 44 309-356 23-67 (91)
256 PF02714 DUF221: Domain of unk 23.3 98 0.0021 29.2 3.8 34 339-374 1-34 (325)
257 PF12091 DUF3567: Protein of u 22.7 86 0.0019 23.1 2.4 18 304-321 60-77 (85)
258 KOG1514 Origin recognition com 22.7 84 0.0018 33.0 3.2 25 292-316 507-533 (767)
259 KOG0334 RNA helicase [RNA proc 22.5 26 0.00056 38.0 -0.3 8 241-248 350-357 (997)
260 PRK08559 nusG transcription an 21.6 2.4E+02 0.0052 23.4 5.3 34 321-359 36-69 (153)
261 PF14893 PNMA: PNMA 21.2 71 0.0015 30.4 2.3 27 173-199 17-43 (331)
262 KOG0156 Cytochrome P450 CYP2 s 20.5 1.5E+02 0.0032 30.1 4.6 60 297-366 35-97 (489)
263 PF14026 DUF4242: Protein of u 20.4 3.4E+02 0.0073 19.5 7.9 66 177-245 3-70 (77)
264 PTZ00071 40S ribosomal protein 20.3 3.1E+02 0.0067 22.2 5.4 45 305-350 35-85 (132)
No 1
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.7e-45 Score=372.70 Aligned_cols=256 Identities=44% Similarity=0.686 Sum_probs=191.7
Q ss_pred ccchhhcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCc
Q 013837 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGI 244 (435)
Q Consensus 165 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~ 244 (435)
.+..+.....++|||+|||+.+|+++|.+||..++..++.....++..|..+.++.++|||||+|.+.++|..||+|+|+
T Consensus 166 ~~~~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~ 245 (509)
T TIGR01642 166 PYQQQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSI 245 (509)
T ss_pred ccCccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCe
Confidence 34567788899999999999999999999999998887766555567889999999999999999999999999999999
Q ss_pred eecCceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEE
Q 013837 245 IFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324 (435)
Q Consensus 245 ~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v 324 (435)
.|.|++|+|.++..+.+............+.....................+|||+|||..+|+++|+++|+.||.|..+
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~ 325 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAF 325 (509)
T ss_pred EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE
Confidence 99999999998887764332222222222221111111111122233556899999999999999999999999999999
Q ss_pred EEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCchHHHHHHHHHHHHHHHHHHHhhccC
Q 013837 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSG 404 (435)
Q Consensus 325 ~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (435)
.|+++..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+|............... ... ......
T Consensus 326 ~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~------~~~---~~~~~~ 396 (509)
T TIGR01642 326 NLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGM------APV---TLLAKA 396 (509)
T ss_pred EEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccc------ccc---cccccc
Confidence 99999889999999999999999999999999999999999999999765433322111100 000 000000
Q ss_pred CcccCCCCCCCCCCcceeEEeccccccC
Q 013837 405 MNTLGGGMSLFGETLAKVLCLTEMMKSM 432 (435)
Q Consensus 405 ~~~~~~~~~~~~~~p~~v~~l~n~~~~~ 432 (435)
....+...+..|+.||+|.||+++.
T Consensus 397 ---~~~~~~~~~~~~s~v~~l~N~~~~~ 421 (509)
T TIGR01642 397 ---LSQSILQIGGKPTKVVQLTNLVTGD 421 (509)
T ss_pred ---chhhhccccCCCceEEEeccCCchh
Confidence 0011112345689999999999763
No 2
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=4.1e-39 Score=321.68 Aligned_cols=181 Identities=28% Similarity=0.436 Sum_probs=149.3
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCc
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~ 249 (435)
.+...++|||+|||..+++++|+++|..||.|..+. ++.+..++.++|||||+|.+.++|.+||.|+|..|.|+
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~------i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~ 158 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQ------CIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGR 158 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE------EeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCe
Confidence 345678999999999999999999999999864421 23333456789999999999999999999999999999
Q ss_pred eEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeec
Q 013837 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD 329 (435)
Q Consensus 250 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~ 329 (435)
+|.|.++............ . .........+|||+|||..+|+++|+++|+.||.|..|.|+.+
T Consensus 159 ~i~v~~~~~~~~~~~~~~~--------------~---~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d 221 (457)
T TIGR01622 159 PIIVQSSQAEKNRAAKAAT--------------H---QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRD 221 (457)
T ss_pred eeEEeecchhhhhhhhccc--------------c---cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEc
Confidence 9999875432211110000 0 0001122679999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 013837 330 RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (435)
Q Consensus 330 ~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~ 373 (435)
+.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+..
T Consensus 222 ~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 222 PETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 98899999999999999999999999999999999999999864
No 3
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.3e-32 Score=278.58 Aligned_cols=194 Identities=20% Similarity=0.201 Sum_probs=142.4
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l 251 (435)
..++|||+|||..+|+++|.++|..||.|..+. ++.+..++.++|||||+|.+.++|..|+ .|||+.|.|+.|
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~------~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l 367 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFN------LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKL 367 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE------EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 457999999999999999999999999875532 2334446778999999999999999999 699999999999
Q ss_pred EEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCC----------CHHHHHHHHHhcCCe
Q 013837 252 RVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYF----------TETQIKELLESFGTL 321 (435)
Q Consensus 252 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~----------te~~l~~~F~~~G~v 321 (435)
.|.++................ +..................++.+|+|.||...- ..++|+++|++||.|
T Consensus 368 ~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v 446 (509)
T TIGR01642 368 HVQRACVGANQATIDTSNGMA-PVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPL 446 (509)
T ss_pred EEEECccCCCCCCcccccccc-ccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCe
Confidence 999876433221110000000 000000000000011123456789999996421 236899999999999
Q ss_pred eEEEEeecC---CCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 013837 322 HGFDLVKDR---DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (435)
Q Consensus 322 ~~v~i~~~~---~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~ 373 (435)
+.|.|+++. .++...|+|||+|.++++|.+||.+|||.+|+|+.|.|.|...
T Consensus 447 ~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 447 INIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred eEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 999998752 3456789999999999999999999999999999999999843
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=3.1e-32 Score=256.59 Aligned_cols=171 Identities=19% Similarity=0.310 Sum_probs=148.7
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
.....++|||+|||+++|+++|+++|..||.|+.+. ++.+..++.++|||||+|.+.++|..|| +|++..|.+
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~------i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g 176 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCR------IMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRN 176 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCC
Confidence 345678999999999999999999999999875532 2344456778999999999999999999 699999999
Q ss_pred ceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee
Q 013837 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328 (435)
Q Consensus 249 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~ 328 (435)
++|+|.++.+... ....++|||+|||..+|+++|+++|++||.|+.|.|+.
T Consensus 177 r~i~V~~a~p~~~-----------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~ 227 (346)
T TIGR01659 177 KRLKVSYARPGGE-----------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILR 227 (346)
T ss_pred ceeeeeccccccc-----------------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEee
Confidence 9999998653210 11235799999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC--eEEEEEEccCCC
Q 013837 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRATASS 375 (435)
Q Consensus 329 ~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~V~~a~~~~ 375 (435)
++.+++++|||||+|.+.++|++||+.||+..|.| +.|+|.+|+...
T Consensus 228 d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 228 DKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 99899999999999999999999999999998865 799999997653
No 5
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.98 E-value=1.9e-32 Score=257.15 Aligned_cols=186 Identities=26% Similarity=0.378 Sum_probs=151.7
Q ss_pred hhcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecC
Q 013837 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG 248 (435)
Q Consensus 169 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g 248 (435)
..+...++||+..|+..+++.+|.+||..+|.|.. +..|.+-....++|.|||+|.+.+....|+.|.|+.+.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrd------VriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg 247 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRD------VRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLG 247 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcce------eEeeccccchhhcceeEEEEecccchhhHhhhcCCcccC
Confidence 35678899999999999999999999999998754 223455556778999999999999999999999999999
Q ss_pred ceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee
Q 013837 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328 (435)
Q Consensus 249 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~ 328 (435)
.+|.|+.........+ ...+. .+......+...|||+||.+++|+++|+.+|++||.|+.|.+.+
T Consensus 248 ~pv~vq~sEaeknr~a-~~s~a--------------~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~ 312 (549)
T KOG0147|consen 248 VPVIVQLSEAEKNRAA-NASPA--------------LQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTK 312 (549)
T ss_pred ceeEecccHHHHHHHH-hcccc--------------ccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeecc
Confidence 9999986543222111 00000 00001112222399999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q 013837 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375 (435)
Q Consensus 329 ~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~ 375 (435)
|.+||.++||+||+|.+.++|.+|++.|||+.|.|+.|+|...+...
T Consensus 313 d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 313 DSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred ccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 98899999999999999999999999999999999999999886654
No 6
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.2e-31 Score=255.54 Aligned_cols=298 Identities=43% Similarity=0.715 Sum_probs=230.0
Q ss_pred CCCCCCCCCCccCCCccCCCCccCCCCCC--------CCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCcccccchhh
Q 013837 99 LSPSRSPSKSKRRSGFDMAPPAAAMLPGA--------AVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQA 170 (435)
Q Consensus 99 rs~sr~~~~~~r~~~~~~~p~~~~~~~~~--------~~~g~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 170 (435)
+.+++.+...+....|+.++++++..++. ...|+.|+....+..... .+..|++.+..++
T Consensus 104 ~r~~~~~~~~r~~~~~~~~~~~fe~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 171 (500)
T KOG0120|consen 104 RRRSRSRRYSRKRSLWDVPPEGFETITPDGAKLYKNFNATGQVPGDLSNPKKSLK------------LPQLPTPPMDSQA 171 (500)
T ss_pred cccccccccccchhhhcCCCCCCcccCchhhhhhhhccccCCCCCCccccccccc------------cccCCCCccCcch
Confidence 34445555577788899999999998874 233333333221111100 3344555666778
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCce
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~ 250 (435)
...+..++|+++|+.++++....+|..--.+.+++....+..++.+.++..++||||+|.+.++|..|+.+++..+.|.+
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~ 251 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMALDGIIFEGRP 251 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhcccchhhCCCC
Confidence 88899999999999999999999999987777777776678899999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecC
Q 013837 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330 (435)
Q Consensus 251 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~ 330 (435)
+++..+..+.+.........+ ....+............+.+||++||..+++..+.++...||.+....++++.
T Consensus 252 ~~~~r~~d~~~~p~~~~~~~~------~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~ 325 (500)
T KOG0120|consen 252 LKIRRPHDYQPVPGITLSPSQ------LGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS 325 (500)
T ss_pred ceecccccccCCccchhhhcc------ccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccc
Confidence 999998888766554444333 22223334455566777899999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCcccCC
Q 013837 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGG 410 (435)
Q Consensus 331 ~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (435)
.+|.++||||.+|.+...+..|+..|||..++++.|.|+.|............ .. +..+++.
T Consensus 326 ~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~----~~--------------~~~~~~i 387 (500)
T KOG0120|consen 326 ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFN----IS--------------QSQVPGI 387 (500)
T ss_pred ccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCC----cc--------------ccccccc
Confidence 99999999999999999999999999999999999999999776543332111 00 0011222
Q ss_pred CCC--CCCCCcceeEEeccccccC
Q 013837 411 GMS--LFGETLAKVLCLTEMMKSM 432 (435)
Q Consensus 411 ~~~--~~~~~p~~v~~l~n~~~~~ 432 (435)
... .+...|+.||+|+|||+|.
T Consensus 388 ~~~~~q~~g~~t~Vl~L~n~Vt~d 411 (500)
T KOG0120|consen 388 PLLMTQMAGIPTEVLCLTNVVTPD 411 (500)
T ss_pred hhhhcccCCCcchhhhhhhcCCHH
Confidence 221 3445899999999999984
No 7
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=6.8e-31 Score=259.70 Aligned_cols=182 Identities=26% Similarity=0.392 Sum_probs=151.7
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
+....++|||+|||+.+++++|+++|..||.|..+. ++.+..++.++|||||+|.+.++|..|+ .|||..|.|
T Consensus 103 a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~------I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~G 176 (612)
T TIGR01645 103 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSIN------MSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG 176 (612)
T ss_pred hhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEE------EeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEec
Confidence 346778999999999999999999999999875532 2334456788999999999999999999 699999999
Q ss_pred ceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee
Q 013837 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328 (435)
Q Consensus 249 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~ 328 (435)
+.|+|.++....... +. .. ..........+|||+|||..+++++|+++|+.||.|+.+.|++
T Consensus 177 R~IkV~rp~~~p~a~--------~~--~~--------~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~ 238 (612)
T TIGR01645 177 RNIKVGRPSNMPQAQ--------PI--ID--------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLAR 238 (612)
T ss_pred ceeeecccccccccc--------cc--cc--------cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEe
Confidence 999998754332100 00 00 0001122346899999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q 013837 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375 (435)
Q Consensus 329 ~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~ 375 (435)
++.+|.++|||||+|.+.++|.+||+.|||+.|+|+.|+|.++..++
T Consensus 239 D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 239 APTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred cCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 99899999999999999999999999999999999999999998644
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=1.7e-29 Score=252.36 Aligned_cols=189 Identities=21% Similarity=0.238 Sum_probs=136.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceEE
Q 013837 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVR 252 (435)
Q Consensus 174 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~ 252 (435)
.++|||+|||..+|+++|.++|..||.|..+. ++.+..++.++|||||+|.+.++|..|+ .|||..|.|++|.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~------~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~ 259 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQ------LHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIK 259 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEE------EEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEE
Confidence 68999999999999999999999999864421 1222223467899999999999999999 6999999999999
Q ss_pred EcCCCCCCcchhhc--CCC--------------------------------CCCCCCc------cccccccc--------
Q 013837 253 VRRPTDYNPTLAAA--LGP--------------------------------GQPSPNL------NLAAVGLA-------- 284 (435)
Q Consensus 253 v~~~~~~~~~~~~~--~~~--------------------------------~~~~~~~------~~~~~~~~-------- 284 (435)
|.++.+........ ... ..+.... .....+..
T Consensus 260 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (457)
T TIGR01622 260 VGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRY 339 (457)
T ss_pred EEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccc
Confidence 99976432111000 000 0000000 00000000
Q ss_pred ---------cC----CCCCCCCCCeEEEcCCCCCCC----------HHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEE
Q 013837 285 ---------SG----AIGGAEGPDRVFVGGLPYYFT----------ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341 (435)
Q Consensus 285 ---------~~----~~~~~~~~~~l~V~nLp~~~t----------e~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV 341 (435)
.. .........+|+|.||....+ .+||+++|++||.|+.|.|... ...|++||
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV 415 (457)
T TIGR01622 340 ATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYL 415 (457)
T ss_pred cccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEE
Confidence 00 000224567899999955544 3689999999999999988643 35799999
Q ss_pred EEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 342 ~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
+|.++++|.+|++.|||.+|+|+.|.|.|..
T Consensus 416 ~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~ 446 (457)
T TIGR01622 416 KFSSVDAALAAFQALNGRYFGGKMITAAFVV 446 (457)
T ss_pred EECCHHHHHHHHHHhcCcccCCeEEEEEEEc
Confidence 9999999999999999999999999999984
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=3.3e-29 Score=242.03 Aligned_cols=197 Identities=23% Similarity=0.374 Sum_probs=145.9
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC--c
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG--V 249 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g--~ 249 (435)
..++|||+|||..+++++|.++|..||.|+.+. ++.+...+.++|||||+|.+.++|..|+ .|||..+.| .
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~------~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~ 161 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSR------ILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTE 161 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEE------EEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCce
Confidence 456899999999999999999999999864321 1112224567899999999999999999 699999887 5
Q ss_pred eEEEcCCCCCCcchhhcCC--------CCCCC-------------------------CCccc------------------
Q 013837 250 AVRVRRPTDYNPTLAAALG--------PGQPS-------------------------PNLNL------------------ 278 (435)
Q Consensus 250 ~l~v~~~~~~~~~~~~~~~--------~~~~~-------------------------~~~~~------------------ 278 (435)
+|.|.++............ +.... .....
T Consensus 162 ~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (352)
T TIGR01661 162 PITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAA 241 (352)
T ss_pred eEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccccc
Confidence 6888876533211000000 00000 00000
Q ss_pred ----------cccccccC--CCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCH
Q 013837 279 ----------AAVGLASG--AIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDP 346 (435)
Q Consensus 279 ----------~~~~~~~~--~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~ 346 (435)
.......+ .........+|||+|||+.+++++|.++|++||.|..|.|+.+..||.++|||||+|.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~ 321 (352)
T TIGR01661 242 QRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNY 321 (352)
T ss_pred ccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCH
Confidence 00000000 000112334799999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHHHHhCCceeCCeEEEEEEccCCC
Q 013837 347 AVTDIACAALNGLKMGDKTLTVRRATASS 375 (435)
Q Consensus 347 ~~A~~Al~~l~g~~~~g~~l~V~~a~~~~ 375 (435)
++|.+||..|||..|+|+.|+|.|+..+.
T Consensus 322 ~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 322 DEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 99999999999999999999999997764
No 10
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4.4e-29 Score=214.12 Aligned_cols=182 Identities=18% Similarity=0.331 Sum_probs=152.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceEE
Q 013837 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVR 252 (435)
Q Consensus 174 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~ 252 (435)
.--|||+.|...++.++|++.|.+||+|..+ .+|.+..++++|||+||.|.+.++|+.|| +|||+=|+++.|.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~a------kvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IR 135 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDA------KVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIR 135 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccc------eEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceee
Confidence 4569999999999999999999999999774 46899999999999999999999999999 6999999999999
Q ss_pred EcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC
Q 013837 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332 (435)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~t 332 (435)
-.|+.-..... +........--.......++|||+|++..+||++|++.|+.||.|.+|+|+++
T Consensus 136 TNWATRKp~e~-------------n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~--- 199 (321)
T KOG0148|consen 136 TNWATRKPSEM-------------NGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD--- 199 (321)
T ss_pred ccccccCcccc-------------CCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc---
Confidence 99987554110 00000000001112234578999999999999999999999999999999998
Q ss_pred CCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCch
Q 013837 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKT 380 (435)
Q Consensus 333 g~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~~~~~~ 380 (435)
+|||||.|++.|.|.+||..+||..|.|..|++.|-+........
T Consensus 200 ---qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~~~ 244 (321)
T KOG0148|consen 200 ---QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGINN 244 (321)
T ss_pred ---cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCCCCc
Confidence 689999999999999999999999999999999999887654443
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=2e-28 Score=236.59 Aligned_cols=168 Identities=23% Similarity=0.371 Sum_probs=144.8
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l 251 (435)
...+|||+|||..+|+++|+++|..||.|..+. ++.+..++.++|||||+|.+.++|.+|| .|||..|.|+.|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~------i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i 75 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCK------LVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTI 75 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEE------EEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeE
Confidence 356899999999999999999999999875532 1333345678999999999999999999 599999999999
Q ss_pred EEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC
Q 013837 252 RVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD 331 (435)
Q Consensus 252 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~ 331 (435)
.|.++.+... .....+|||+|||..+++++|.++|+.||.|..+.|+.+..
T Consensus 76 ~v~~a~~~~~-----------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~ 126 (352)
T TIGR01661 76 KVSYARPSSD-----------------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNV 126 (352)
T ss_pred EEEeeccccc-----------------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCC
Confidence 9998653211 12245899999999999999999999999999999999888
Q ss_pred CCCcceEEEEEEcCHHHHHHHHHHhCCceeCC--eEEEEEEccCCC
Q 013837 332 TGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRATASS 375 (435)
Q Consensus 332 tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~V~~a~~~~ 375 (435)
++.++|||||+|.+.++|..||+.|||..+.| ..|.|.|+....
T Consensus 127 ~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 127 TGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 88999999999999999999999999999977 678999986543
No 12
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3.1e-28 Score=221.60 Aligned_cols=174 Identities=25% Similarity=0.397 Sum_probs=148.2
Q ss_pred hhcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCC-cee
Q 013837 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDG-IIF 246 (435)
Q Consensus 169 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~-~~~ 246 (435)
..+.+.-+|||+-||..++|.||+.+|++||.|..++ ++.|..++.++|||||.|.+.++|.+|+ .|++ ++|
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~ein------l~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktl 102 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEIN------LIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTL 102 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEE------eecccccCcccceEEEEeccHHHHHHHHHHhhccccc
Confidence 4456777899999999999999999999999987754 4777888999999999999999999999 5555 567
Q ss_pred cC--ceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEE
Q 013837 247 EG--VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324 (435)
Q Consensus 247 ~g--~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v 324 (435)
-| .+|.|+++...... .....+|||+-|+..+||.+|+++|++||.|++|
T Consensus 103 pG~~~pvqvk~Ad~E~er----------------------------~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~ 154 (510)
T KOG0144|consen 103 PGMHHPVQVKYADGERER----------------------------IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDC 154 (510)
T ss_pred CCCCcceeecccchhhhc----------------------------cccchhhhhhhccccccHHHHHHHHHhhCccchh
Confidence 66 67888887543211 1234689999999999999999999999999999
Q ss_pred EEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCc-eeCC--eEEEEEEccCCCCC
Q 013837 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL-KMGD--KTLTVRRATASSGQ 377 (435)
Q Consensus 325 ~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~-~~~g--~~l~V~~a~~~~~~ 377 (435)
.|++|.+ +.++|||||+|.+.+.|..||++|||. .+.| .+|.|.||..++..
T Consensus 155 ~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 155 YILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred hheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCc
Confidence 9999964 999999999999999999999999986 4554 68999999877543
No 13
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=4.6e-28 Score=221.56 Aligned_cols=199 Identities=18% Similarity=0.239 Sum_probs=148.4
Q ss_pred cchhhcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCc
Q 013837 166 MTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGI 244 (435)
Q Consensus 166 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~ 244 (435)
+........|.|||+.||.++.|++|.-+|+..|+|..+- .+.+...+.++|||||.|++.++|++|+ .||++
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elR------LMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~ 148 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELR------LMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNY 148 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEE------EeecccCCCCcceEEEEeecHHHHHHHHHHhhCc
Confidence 4445556789999999999999999999999999987642 3566678899999999999999999999 69999
Q ss_pred ee-cCceEEEcCCCCCCcc----------------hhhcCCC--------CCCC-CCc----------------------
Q 013837 245 IF-EGVAVRVRRPTDYNPT----------------LAAALGP--------GQPS-PNL---------------------- 276 (435)
Q Consensus 245 ~~-~g~~l~v~~~~~~~~~----------------~~~~~~~--------~~~~-~~~---------------------- 276 (435)
+| .|+.|.|.-+...... .....++ ..+. ...
T Consensus 149 Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl 228 (506)
T KOG0117|consen 149 EIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKL 228 (506)
T ss_pred cccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhc
Confidence 88 4777777643221110 0000000 0000 000
Q ss_pred --------------cccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEE
Q 013837 277 --------------NLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342 (435)
Q Consensus 277 --------------~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~ 342 (435)
.|+.....+ ........+.|||+||+.++|||.|+++|+.||.|+.|+.++| ||||.
T Consensus 229 ~~g~~klwgn~~tVdWAep~~e~-ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVH 299 (506)
T KOG0117|consen 229 MPGKIKLWGNAITVDWAEPEEEP-DEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVH 299 (506)
T ss_pred cCCceeecCCcceeeccCcccCC-ChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEe
Confidence 010000001 1112334567999999999999999999999999999998876 99999
Q ss_pred EcCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCc
Q 013837 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSK 379 (435)
Q Consensus 343 f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~~~~~ 379 (435)
|.+.++|.+||+.|||..|.|..|.|.+|++...+++
T Consensus 300 f~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 300 FAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKK 336 (506)
T ss_pred ecchHHHHHHHHHhcCceecCceEEEEecCChhhhcc
Confidence 9999999999999999999999999999988765444
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=1.1e-26 Score=237.39 Aligned_cols=165 Identities=19% Similarity=0.360 Sum_probs=140.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceEEEc
Q 013837 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVR 254 (435)
Q Consensus 176 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~v~ 254 (435)
+|||+|||.++||++|+++|..||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .+++..|.|++|.|.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~------v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~ 75 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVR------VCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIM 75 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEee
Confidence 699999999999999999999999864421 1223334678899999999999999999 699999999999999
Q ss_pred CCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCC
Q 013837 255 RPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334 (435)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~ 334 (435)
|+..... .......+|||+|||.++++++|+++|+.||.|+.|.|+.+. +|+
T Consensus 76 ~s~~~~~---------------------------~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~ 127 (562)
T TIGR01628 76 WSQRDPS---------------------------LRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGK 127 (562)
T ss_pred ccccccc---------------------------ccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCC
Confidence 8643210 001223579999999999999999999999999999999984 688
Q ss_pred cceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 013837 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (435)
Q Consensus 335 ~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~ 374 (435)
++|||||+|.+.++|.+|++.|||..+.|+.|.|.....+
T Consensus 128 skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~ 167 (562)
T TIGR01628 128 SRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKK 167 (562)
T ss_pred cccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccc
Confidence 9999999999999999999999999999999999876543
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.94 E-value=1.9e-26 Score=228.09 Aligned_cols=190 Identities=19% Similarity=0.261 Sum_probs=137.3
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceec-C
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE-G 248 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~-g 248 (435)
....++|||+|||.+++|++|.++|..||.|+.+. ++.+ ..+.++|||||+|.+.++|.+|| .||+..|. |
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vr------l~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~G 127 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELR------LMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPG 127 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEE------EEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCC
Confidence 34568999999999999999999999999876532 2333 56789999999999999999999 59998885 6
Q ss_pred ceEEEcCCCCCCcc-------------hh---hcCCC---------C--CCCCCcccc--------------------c-
Q 013837 249 VAVRVRRPTDYNPT-------------LA---AALGP---------G--QPSPNLNLA--------------------A- 280 (435)
Q Consensus 249 ~~l~v~~~~~~~~~-------------~~---~~~~~---------~--~~~~~~~~~--------------------~- 280 (435)
+.|.|..+...... .. ..... . ......... .
T Consensus 128 r~l~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki 207 (578)
T TIGR01648 128 RLLGVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRI 207 (578)
T ss_pred ccccccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccce
Confidence 76666544321100 00 00000 0 000000000 0
Q ss_pred --------ccc-ccC---CCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhc--CCeeEEEEeecCCCCCcceEEEEEEcCH
Q 013837 281 --------VGL-ASG---AIGGAEGPDRVFVGGLPYYFTETQIKELLESF--GTLHGFDLVKDRDTGNSKGYGFCVYQDP 346 (435)
Q Consensus 281 --------~~~-~~~---~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~v~~v~i~~~~~tg~~~G~afV~f~~~ 346 (435)
+.. .+. ........++|||+||+..+|+++|+++|+.| |.|+.|.+++ +||||+|.+.
T Consensus 208 ~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~ 279 (578)
T TIGR01648 208 QLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDR 279 (578)
T ss_pred EecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCH
Confidence 000 000 00112235689999999999999999999999 9999987754 4999999999
Q ss_pred HHHHHHHHHhCCceeCCeEEEEEEccCCC
Q 013837 347 AVTDIACAALNGLKMGDKTLTVRRATASS 375 (435)
Q Consensus 347 ~~A~~Al~~l~g~~~~g~~l~V~~a~~~~ 375 (435)
++|.+||+.|||..|.|+.|+|.||++..
T Consensus 280 e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 280 EDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 99999999999999999999999998764
No 16
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=2.7e-26 Score=234.56 Aligned_cols=184 Identities=22% Similarity=0.345 Sum_probs=146.6
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceec---
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE--- 247 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~--- 247 (435)
....+|||+|||..+|+++|+++|..||.|..+. +.....+.++|||||+|.+.++|.+|+ .+++..|.
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~-------i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~ 248 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAA-------VMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAK 248 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEE-------EEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccc
Confidence 3456899999999999999999999999865421 222234567899999999999999999 69999999
Q ss_pred -CceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEE
Q 013837 248 -GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326 (435)
Q Consensus 248 -g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i 326 (435)
|+.|.|.++................ ............+|||+||+..+|+++|+++|+.||.|.+|.|
T Consensus 249 ~g~~l~v~~a~~k~er~~~~~~~~~~-----------~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i 317 (562)
T TIGR01628 249 EGKKLYVGRAQKRAEREAELRRKFEE-----------LQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKV 317 (562)
T ss_pred cceeeEeecccChhhhHHHHHhhHHh-----------hhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEE
Confidence 9999998876543221100000000 0000111234568999999999999999999999999999999
Q ss_pred eecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 013837 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (435)
Q Consensus 327 ~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~ 374 (435)
+.+ .+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+|..+
T Consensus 318 ~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 318 MLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred EEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 999 67999999999999999999999999999999999999999544
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=7.5e-26 Score=225.65 Aligned_cols=170 Identities=19% Similarity=0.159 Sum_probs=138.3
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH---hCCceecCc
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA---LDGIIFEGV 249 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~---l~~~~~~g~ 249 (435)
++++|||+|||+.+|+++|+++|..||. |..+.+..+++||||+|.+.++|..|+. +++..|.|+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~------------V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~ 68 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGP------------VSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQ 68 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCC------------eeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCe
Confidence 3689999999999999999999999998 5555555688999999999999999994 588999999
Q ss_pred eEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeec
Q 013837 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD 329 (435)
Q Consensus 250 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~ 329 (435)
+|.|.|+......... ... ..........+|+|.||++.+|+++|+++|+.||.|+.|.|+++
T Consensus 69 ~l~v~~s~~~~~~~~~-------~~~----------~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~ 131 (481)
T TIGR01649 69 PAFFNYSTSQEIKRDG-------NSD----------FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTK 131 (481)
T ss_pred EEEEEecCCcccccCC-------CCc----------ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEec
Confidence 9999998643211100 000 00011223357999999999999999999999999999999876
Q ss_pred CCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC--eEEEEEEccCCC
Q 013837 330 RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRATASS 375 (435)
Q Consensus 330 ~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~V~~a~~~~ 375 (435)
.. .|+|||+|.+.++|.+|++.|||..|.| +.|+|.|++...
T Consensus 132 ~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 132 NN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred CC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCC
Confidence 42 4799999999999999999999999954 689999998644
No 18
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=7e-27 Score=189.44 Aligned_cols=170 Identities=25% Similarity=0.407 Sum_probs=143.0
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH-hCCceecCceE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVAV 251 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~-l~~~~~~g~~l 251 (435)
...||||+||+..++++.|.++|-+.|.|+.+.+ -.+..+...+|||||||.+.++|.-|+. ||...|.|++|
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~i------PkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpI 81 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHI------PKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPI 81 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeec------chhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCcee
Confidence 4568999999999999999999999997543211 1222233468999999999999999995 99999999999
Q ss_pred EEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeecC
Q 013837 252 RVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHG-FDLVKDR 330 (435)
Q Consensus 252 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~-v~i~~~~ 330 (435)
+|..+.... .......+|||+||.+.++|..|.+.|+.||.+.. -.|++++
T Consensus 82 rv~kas~~~----------------------------~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~ 133 (203)
T KOG0131|consen 82 RVNKASAHQ----------------------------KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDP 133 (203)
T ss_pred EEEeccccc----------------------------ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccc
Confidence 998765221 11122368999999999999999999999999754 4789999
Q ss_pred CCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCCC
Q 013837 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSG 376 (435)
Q Consensus 331 ~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~~ 376 (435)
.||+++|||||.|.+.+.+.+|+.++||..++.++|+|.|+..+..
T Consensus 134 ~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 134 DTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred cCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCC
Confidence 9999999999999999999999999999999999999999977643
No 19
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=9.9e-25 Score=217.61 Aligned_cols=190 Identities=18% Similarity=0.211 Sum_probs=139.7
Q ss_pred cccCCeEEEcCCCC-CCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec-CCCcEEEEEecCHHHHHHHH-HhCCceec
Q 013837 171 TRHARRVYVGGLPP-LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-HEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (435)
Q Consensus 171 ~~~~~~l~V~nlp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~-~~~g~afv~f~~~~~a~~a~-~l~~~~~~ 247 (435)
....++|||+|||+ .+|+++|+++|+.||.| ..+++. ..+|||||+|.+.++|..|+ .|||..|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V------------~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~ 339 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNV------------ERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLF 339 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCe------------EEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 44678999999998 69999999999999984 344433 24799999999999999999 69999999
Q ss_pred CceEEEcCCCCCCcchhhcCC--CCCCC-CCccccccc-cc----cCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcC
Q 013837 248 GVAVRVRRPTDYNPTLAAALG--PGQPS-PNLNLAAVG-LA----SGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFG 319 (435)
Q Consensus 248 g~~l~v~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~-~~----~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G 319 (435)
|++|.|.++............ ..... ......... .. ........+..+|||+|||..+|+++|+++|+.||
T Consensus 340 g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G 419 (481)
T TIGR01649 340 GKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENG 419 (481)
T ss_pred CceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcC
Confidence 999999987543221111000 00000 000000000 00 00001124567899999999999999999999999
Q ss_pred C--eeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeE------EEEEEccCC
Q 013837 320 T--LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT------LTVRRATAS 374 (435)
Q Consensus 320 ~--v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~------l~V~~a~~~ 374 (435)
. |..|++.... ++ .+|+|||+|.+.++|.+||..|||..|.|+. |+|.|+++.
T Consensus 420 ~~~i~~ik~~~~~-~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 420 VHKVKKFKFFPKD-NE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CccceEEEEecCC-CC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 8 8888876543 23 5789999999999999999999999999884 999999653
No 20
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.4e-25 Score=189.96 Aligned_cols=168 Identities=20% Similarity=0.351 Sum_probs=151.1
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
..-..|+|.-||..+|+++|+.+|...|+|..|+ .|.+..++.+-||+||.|-++++|++|+ .|||..|..+.
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScK------LvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KT 112 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCK------LVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKT 112 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeee------eeeccccccccccceeeecChHHHHHHHhhhcceeeccce
Confidence 3445699999999999999999999999998765 4788889999999999999999999999 69999999999
Q ss_pred EEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecC
Q 013837 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330 (435)
Q Consensus 251 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~ 330 (435)
|+|.|+.+.. .......|||.+||..+|..+|.++|++||.|..-+|..|.
T Consensus 113 IKVSyARPSs-----------------------------~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dq 163 (360)
T KOG0145|consen 113 IKVSYARPSS-----------------------------DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQ 163 (360)
T ss_pred EEEEeccCCh-----------------------------hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhc
Confidence 9999976432 22334589999999999999999999999999999999998
Q ss_pred CCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCe--EEEEEEccCC
Q 013837 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK--TLTVRRATAS 374 (435)
Q Consensus 331 ~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~--~l~V~~a~~~ 374 (435)
.||.++|.+||.|....+|+.||..|||.+-.|+ +|.|+||+..
T Consensus 164 vtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 164 VTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred ccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 8999999999999999999999999999988764 7999999765
No 21
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=8.8e-25 Score=186.53 Aligned_cols=197 Identities=25% Similarity=0.394 Sum_probs=152.0
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc-
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV- 249 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~- 249 (435)
-....|||.+||..+|..+|.++|.+||.|+-. .++.+..++.++|.+||.|...++|+.|+ .|||+.-.|.
T Consensus 125 Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItS------RiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~t 198 (360)
T KOG0145|consen 125 IKDANLYVSGLPKTMTQKELEQIFSPFGRIITS------RILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCT 198 (360)
T ss_pred hcccceEEecCCccchHHHHHHHHHHhhhhhhh------hhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCC
Confidence 445679999999999999999999999998653 23566667889999999999999999999 6999988774
Q ss_pred -eEEEcCCCCCCcchhhc-----C--------CCCCCCCC-c---c----cccc-ccc----------c--CCCCCCCCC
Q 013837 250 -AVRVRRPTDYNPTLAAA-----L--------GPGQPSPN-L---N----LAAV-GLA----------S--GAIGGAEGP 294 (435)
Q Consensus 250 -~l~v~~~~~~~~~~~~~-----~--------~~~~~~~~-~---~----~~~~-~~~----------~--~~~~~~~~~ 294 (435)
+|.|+++.......... . ++...... . + ..+. ... . .........
T Consensus 199 epItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g 278 (360)
T KOG0145|consen 199 EPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGG 278 (360)
T ss_pred CCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCe
Confidence 79999876543221110 0 00000000 0 0 0000 000 0 011122335
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~ 374 (435)
-||||-||.++++|.-|.++|.+||.|..|+|++|..|.++|||+||.+.+.++|..||..|||..++++.|.|.|.+.+
T Consensus 279 ~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 279 WCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred eEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999998654
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.6e-25 Score=209.43 Aligned_cols=191 Identities=18% Similarity=0.268 Sum_probs=147.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceEEE
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 253 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~v 253 (435)
.||||++||+.++.++|.++|+.+|.|.++++ |.+.-...++||+||.|+=.++++.|+ +.++..|.|+.|.|
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~v------Vt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v 79 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVV------VTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNV 79 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEE------ecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccc
Confidence 79999999999999999999999999876531 223334467899999999999999999 69999999999999
Q ss_pred cCCCCCCcchhhcCCC-CCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC
Q 013837 254 RRPTDYNPTLAAALGP-GQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332 (435)
Q Consensus 254 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~t 332 (435)
..+...........+. ........ ...+.......+.-.|+|+|||+.|...+|+.+|+.||.|..|.|+..+++
T Consensus 80 ~~A~~R~r~e~~~~~e~~~veK~~~----q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dg 155 (678)
T KOG0127|consen 80 DPAKKRARSEEVEKGENKAVEKPIE----QKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDG 155 (678)
T ss_pred ccccccccchhcccccchhhhcccc----cCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCC
Confidence 9877654332111100 00000000 000001111223457999999999999999999999999999999988765
Q ss_pred CCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCCC
Q 013837 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSG 376 (435)
Q Consensus 333 g~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~~ 376 (435)
+. .|||||+|.+..+|..||+.+||..|+|++|.|.||..+..
T Consensus 156 kl-cGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 156 KL-CGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred Cc-cceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 44 59999999999999999999999999999999999988763
No 23
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.93 E-value=5.3e-25 Score=207.21 Aligned_cols=186 Identities=19% Similarity=0.218 Sum_probs=133.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceEEE
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 253 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~v 253 (435)
..|||+||.+++++++|+.+|++||.|-. ++...+..++.++||+||+|.+.++|.+|+ .|||+.|.|+.|+|
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~------v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV 352 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIEN------VQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKV 352 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCccccee------eeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEE
Confidence 34999999999999999999999999733 334555568999999999999999999998 69999999999999
Q ss_pred cCCCCCCcchhhcCCC---------CCCCCCcc-----------------------ccccc-------cc----cCCCCC
Q 013837 254 RRPTDYNPTLAAALGP---------GQPSPNLN-----------------------LAAVG-------LA----SGAIGG 290 (435)
Q Consensus 254 ~~~~~~~~~~~~~~~~---------~~~~~~~~-----------------------~~~~~-------~~----~~~~~~ 290 (435)
...++.......+... ..+....+ +.+.. .. ......
T Consensus 353 ~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p 432 (549)
T KOG0147|consen 353 SVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDP 432 (549)
T ss_pred EEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCc
Confidence 7554332221110000 00000000 00000 00 001111
Q ss_pred C-------CCCCeEEEcCCCCC--CC--------HHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHH
Q 013837 291 A-------EGPDRVFVGGLPYY--FT--------ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 353 (435)
Q Consensus 291 ~-------~~~~~l~V~nLp~~--~t--------e~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al 353 (435)
. .++.|+.+.|+-.. .| .+||.+.|.+||+|..|.+.+. +-|+.||.|.+++.|..|+
T Consensus 433 ~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~ 507 (549)
T KOG0147|consen 433 ADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAV 507 (549)
T ss_pred cccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHH
Confidence 1 45678889998433 22 2789999999999976666443 3499999999999999999
Q ss_pred HHhCCceeCCeEEEEEEc
Q 013837 354 AALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 354 ~~l~g~~~~g~~l~V~~a 371 (435)
.+|||.||.|+.|++.|.
T Consensus 508 ~alhgrWF~gr~Ita~~~ 525 (549)
T KOG0147|consen 508 KALHGRWFAGRMITAKYL 525 (549)
T ss_pred HHHhhhhhccceeEEEEe
Confidence 999999999999999997
No 24
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.2e-24 Score=203.70 Aligned_cols=191 Identities=26% Similarity=0.358 Sum_probs=145.2
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC-----CCcEEEEEecCHHHHHHHH-HhCCcee
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH-----EKKFAFVEMRTVEEASNAM-ALDGIIF 246 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~-----~~g~afv~f~~~~~a~~a~-~l~~~~~ 246 (435)
+-..|+|+|||+.+.+.+|..+|+.||.| +.+.++. -.|||||.|....+|..|| .+|+..|
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V------------~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i 183 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKV------------VEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKI 183 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceE------------EEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCcee
Confidence 35789999999999999999999999984 4444432 3599999999999999999 5999999
Q ss_pred cCceEEEcCCCCCCcchhhcCC-----------------CCCCC---------------C--Ccccc-------------
Q 013837 247 EGVAVRVRRPTDYNPTLAAALG-----------------PGQPS---------------P--NLNLA------------- 279 (435)
Q Consensus 247 ~g~~l~v~~~~~~~~~~~~~~~-----------------~~~~~---------------~--~~~~~------------- 279 (435)
.|++|.|.|+.+...-...+.. ..... . ..+.-
T Consensus 184 ~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~ 263 (678)
T KOG0127|consen 184 DGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEED 263 (678)
T ss_pred cCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccc
Confidence 9999999998754432211100 00000 0 00000
Q ss_pred cc-cc-ccC------------CCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcC
Q 013837 280 AV-GL-ASG------------AIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQD 345 (435)
Q Consensus 280 ~~-~~-~~~------------~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~ 345 (435)
.. .. .++ .........+|||+|||+.+|+++|.++|++||.|..+.|+.++.||.++|.|||.|.+
T Consensus 264 ~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt 343 (678)
T KOG0127|consen 264 DVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKT 343 (678)
T ss_pred ccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEecc
Confidence 00 00 000 01112234789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----CC-ceeCCeEEEEEEccCCC
Q 013837 346 PAVTDIACAAL-----NG-LKMGDKTLTVRRATASS 375 (435)
Q Consensus 346 ~~~A~~Al~~l-----~g-~~~~g~~l~V~~a~~~~ 375 (435)
..+|+.||.+. .| ..|.|+.|+|..|....
T Consensus 344 ~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 344 QIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred HHHHHHHHHhcCccCCCceEEEeccEEeeeeccchH
Confidence 99999999976 24 78899999999996654
No 25
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.92 E-value=2e-25 Score=193.63 Aligned_cols=148 Identities=24% Similarity=0.433 Sum_probs=133.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceEEE
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 253 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~v 253 (435)
-+|||+|||..+++.+|+.+|++||+|+.| .+. |.||||..++...|..|+ .|++.+|+|..|.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlEC------------DIv--KNYgFVHiEdktaaedairNLhgYtLhg~nInV 68 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLEC------------DIV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINV 68 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEee------------eee--cccceEEeecccccHHHHhhcccceecceEEEE
Confidence 369999999999999999999999996554 332 579999999999999999 59999999999999
Q ss_pred cCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCC
Q 013837 254 RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG 333 (435)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg 333 (435)
+-++.. ....++|+|+||.+.++.++|+..|++||+|.++.|+++
T Consensus 69 eaSksK-------------------------------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd---- 113 (346)
T KOG0109|consen 69 EASKSK-------------------------------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD---- 113 (346)
T ss_pred Eecccc-------------------------------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc----
Confidence 966543 244578999999999999999999999999999999886
Q ss_pred CcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q 013837 334 NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375 (435)
Q Consensus 334 ~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~ 375 (435)
|+||.|.-.++|..||..|+|.+|.|+.++|++++...
T Consensus 114 ----y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 114 ----YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred ----eeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 99999999999999999999999999999999987653
No 26
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=3.4e-24 Score=191.16 Aligned_cols=182 Identities=27% Similarity=0.389 Sum_probs=152.9
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
+-.-.|+|||+.|.+.+.|+.|+..|.+||.|.++++ -.+..+++++|||||||+-+|.|..|+ .|||..++|
T Consensus 109 ALaiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInM------SWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGG 182 (544)
T KOG0124|consen 109 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINM------SWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG 182 (544)
T ss_pred HHHHhHheeeeeeEEEechHHHHhhccCCCCcceeec------ccccccccccceEEEEEeCcHHHHHHHHHhccccccC
Confidence 3455699999999999999999999999999876543 345567889999999999999999999 599999999
Q ss_pred ceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee
Q 013837 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328 (435)
Q Consensus 249 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~ 328 (435)
+.|+|.++...... ++--. .-..+....+.|||..+.++++|+||+.+|+.||.|+.|.+.+
T Consensus 183 RNiKVgrPsNmpQA--------QpiID----------~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr 244 (544)
T KOG0124|consen 183 RNIKVGRPSNMPQA--------QPIID----------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLAR 244 (544)
T ss_pred ccccccCCCCCccc--------chHHH----------HHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeec
Confidence 99999976543211 00000 0001123456899999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q 013837 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375 (435)
Q Consensus 329 ~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~ 375 (435)
++.++.++||+||+|.+...-..||..||=+.++|..|+|..+...+
T Consensus 245 ~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 245 APTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred cCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCC
Confidence 99888999999999999999999999999999999999999886543
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.87 E-value=3.7e-22 Score=193.13 Aligned_cols=174 Identities=21% Similarity=0.378 Sum_probs=141.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe----cCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI----NHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~----~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
++|||.||++.+|.++|...|...|.|+.+. |....- -.+.|||||+|.++++|+.|+ .|+|..|.|+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~-------I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH 588 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIE-------ISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGH 588 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEE-------EeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCc
Confidence 3499999999999999999999999865421 111111 124599999999999999999 6999999999
Q ss_pred eEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeec
Q 013837 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD 329 (435)
Q Consensus 250 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~ 329 (435)
.|.|.++.... +.+.+. ........++|+|+|||+.++-.+|+++|..||.|.+|+|++.
T Consensus 589 ~l~lk~S~~k~---~~~~gK-----------------~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK 648 (725)
T KOG0110|consen 589 KLELKISENKP---ASTVGK-----------------KKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK 648 (725)
T ss_pred eEEEEeccCcc---cccccc-----------------ccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchh
Confidence 99999876111 101110 0011122578999999999999999999999999999999998
Q ss_pred CCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q 013837 330 RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375 (435)
Q Consensus 330 ~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~ 375 (435)
...+.++|||||+|-++.+|..|+.+|.+..|.|+.|.++||+...
T Consensus 649 ~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 649 IGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred hcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 6667789999999999999999999999999999999999996654
No 28
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.9e-21 Score=184.48 Aligned_cols=151 Identities=21% Similarity=0.364 Sum_probs=134.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceEEEc
Q 013837 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVR 254 (435)
Q Consensus 176 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~v~ 254 (435)
.|||+ +++|+..|.++|+++|.++.. .++.+. + +-|||||.|.++++|.+|| ++|...+.|++|.|.
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~------rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim 70 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSI------RVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIM 70 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeE------EEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEee
Confidence 58999 999999999999999998763 223334 3 8999999999999999999 699999999999999
Q ss_pred CCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCC
Q 013837 255 RPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334 (435)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~ 334 (435)
|..... ..|||.||+..++..+|.++|+.||.|++|++..+.+ |
T Consensus 71 ~s~rd~----------------------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g- 114 (369)
T KOG0123|consen 71 WSQRDP----------------------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G- 114 (369)
T ss_pred hhccCC----------------------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-
Confidence 865321 1299999999999999999999999999999999964 6
Q ss_pred cceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q 013837 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375 (435)
Q Consensus 335 ~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~ 375 (435)
++|| ||+|+++++|.+||+.|||..+.|+.|.|.....+.
T Consensus 115 ~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 115 SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 8999 999999999999999999999999999999886543
No 29
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.4e-21 Score=168.27 Aligned_cols=141 Identities=27% Similarity=0.445 Sum_probs=116.4
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCce
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~ 250 (435)
+..++||||+||...+||+-|..||++.|.+..+++ .|. .
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~---------------------i~~-------------------e 42 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKV---------------------IFD-------------------E 42 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhcccccccee---------------------ehh-------------------h
Confidence 356799999999999999999999999998654321 111 4
Q ss_pred EEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecC
Q 013837 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330 (435)
Q Consensus 251 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~ 330 (435)
|+|.|+.... .+.. ......-.+||+.|...++-++|++.|.+||.|.+++|++|.
T Consensus 43 ~~v~wa~~p~---------nQsk---------------~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~ 98 (321)
T KOG0148|consen 43 LKVNWATAPG---------NQSK---------------PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDM 98 (321)
T ss_pred hccccccCcc---------cCCC---------------CccccceeEEehhcchhcchHHHHHHhccccccccceEeecc
Confidence 5666654321 0111 111224469999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q 013837 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375 (435)
Q Consensus 331 ~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~ 375 (435)
.|+++|||+||.|.+.++|+.||..|||.+|+++.|+..||+-|+
T Consensus 99 ~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 99 NTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred cCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 999999999999999999999999999999999999999998776
No 30
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=1.3e-20 Score=180.26 Aligned_cols=187 Identities=17% Similarity=0.254 Sum_probs=141.0
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
....++|+|++||..+++.++.+++..||.+..+. .+.+..++.++||||.+|.++..+..|+ .|||+.++++
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~------lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~ 359 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFR------LVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK 359 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhhe------eecccccccccceeeeeeeCCcchhhhhcccchhhhcCc
Confidence 35668899999999999999999999999988765 4777777899999999999999999999 5999999999
Q ss_pred eEEEcCCCCCCcchhhcCCCCCCCCCccccc--c-cccc-CCCCCCCCCCeEEEcCCC--CCC-C-------HHHHHHHH
Q 013837 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAA--V-GLAS-GAIGGAEGPDRVFVGGLP--YYF-T-------ETQIKELL 315 (435)
Q Consensus 250 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~-~~~~~~~~~~~l~V~nLp--~~~-t-------e~~l~~~F 315 (435)
+|.|+.+........ ...+..+ . ++.. .......++..|++.|+- ..+ . -|+|+..|
T Consensus 360 ~lvvq~A~~g~~~~~---------~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec 430 (500)
T KOG0120|consen 360 KLVVQRAIVGASNAN---------VNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTEC 430 (500)
T ss_pred eeEeehhhccchhcc---------ccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHh
Confidence 999998764432221 1111000 0 0000 012233445566666652 111 1 16778889
Q ss_pred HhcCCeeEEEEeec-CC--CCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 316 ESFGTLHGFDLVKD-RD--TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 316 ~~~G~v~~v~i~~~-~~--tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
.+||.|..|.|+.+ .+ ..-..|..||+|.+.+++++|+.+|+|.+|+|++|...|-.
T Consensus 431 ~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 431 AKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred cccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 99999999999887 21 23355789999999999999999999999999999999974
No 31
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=4e-21 Score=164.88 Aligned_cols=83 Identities=28% Similarity=0.503 Sum_probs=79.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
..|+|||-.||.+..+.+|..+|-+||.|.+.+++.|+.|+.+|+|+||.|+++.+|+.||.+|||+.|+-+.|+|.+..
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKR 363 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 363 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcC
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 013837 373 ASS 375 (435)
Q Consensus 373 ~~~ 375 (435)
++.
T Consensus 364 Pkd 366 (371)
T KOG0146|consen 364 PKD 366 (371)
T ss_pred ccc
Confidence 764
No 32
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.85 E-value=1.2e-21 Score=179.11 Aligned_cols=175 Identities=22% Similarity=0.387 Sum_probs=151.2
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceEE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR 252 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l~ 252 (435)
..++|||++|++.++++.|+++|.+||+|+.|. ++.+..+++++||+||+|.++++..++|....+.|.|+.|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~------vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve 78 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCV------VMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVE 78 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEE------EeccCCCCCcccccceecCCCcchheeecccccccCCcccc
Confidence 678999999999999999999999999987754 24555668899999999999999999998888899999999
Q ss_pred EcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC
Q 013837 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332 (435)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~t 332 (435)
+..+.+...... ........+|||++||..++++++++.|++||.|..+.++.|..+
T Consensus 79 ~k~av~r~~~~~-----------------------~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~ 135 (311)
T KOG4205|consen 79 PKRAVSREDQTK-----------------------VGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTT 135 (311)
T ss_pred ceeccCcccccc-----------------------cccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccc
Confidence 987765432211 011124568999999999999999999999999999999999999
Q ss_pred CCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCC
Q 013837 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQ 377 (435)
Q Consensus 333 g~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~~~ 377 (435)
..++||+||.|.+++.+.+++. ..-+.|+|+.|.|..|.++...
T Consensus 136 ~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 136 SRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred cccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhc
Confidence 9999999999999999999988 6889999999999999887643
No 33
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=4.1e-21 Score=175.39 Aligned_cols=81 Identities=26% Similarity=0.457 Sum_probs=77.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~ 373 (435)
...|||.+||.+.-+.+|...|..||.|++.++..|+.||.++.|+||.|++..+|..||.+|||+.|+++.|+|.+...
T Consensus 424 GanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~ 503 (510)
T KOG0144|consen 424 GANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRD 503 (510)
T ss_pred ccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeec
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999755
Q ss_pred C
Q 013837 374 S 374 (435)
Q Consensus 374 ~ 374 (435)
+
T Consensus 504 ~ 504 (510)
T KOG0144|consen 504 R 504 (510)
T ss_pred c
Confidence 4
No 34
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2.6e-20 Score=176.72 Aligned_cols=205 Identities=24% Similarity=0.386 Sum_probs=160.5
Q ss_pred CCCCCCCcccccchhhcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHH
Q 013837 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEE 234 (435)
Q Consensus 155 ~~~~~~~p~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~ 234 (435)
+....+.|+..|+.+..... |||.||+..++..+|.++|+.||+|++|. +...-..++|| ||+|.++++
T Consensus 59 ~~~~~~~~~rim~s~rd~~~--~~i~nl~~~~~~~~~~d~f~~~g~ilS~k--------v~~~~~g~kg~-FV~f~~e~~ 127 (369)
T KOG0123|consen 59 FDVLKGKPIRIMWSQRDPSL--VFIKNLDESIDNKSLYDTFSEFGNILSCK--------VATDENGSKGY-FVQFESEES 127 (369)
T ss_pred CcccCCcEEEeehhccCCce--eeecCCCcccCcHHHHHHHHhhcCeeEEE--------EEEcCCCceee-EEEeCCHHH
Confidence 45566777777776655443 99999999999999999999999988753 22333338999 999999999
Q ss_pred HHHHH-HhCCceecCceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHH
Q 013837 235 ASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKE 313 (435)
Q Consensus 235 a~~a~-~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~ 313 (435)
|.+|+ .+||..+.|++|.|............... ....-+.++|.|++..++++.|.+
T Consensus 128 a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~---------------------~~~~~t~v~vk~~~~~~~~~~l~~ 186 (369)
T KOG0123|consen 128 AKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE---------------------YKKRFTNVYVKNLEEDSTDEELKD 186 (369)
T ss_pred HHHHHHHhcCcccCCCeeEEeeccchhhhcccccc---------------------hhhhhhhhheeccccccchHHHHH
Confidence 99999 69999999999999865443221111000 112235799999999999999999
Q ss_pred HHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCCCCCchHHHHHHHHHHHHH
Q 013837 314 LLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHI 393 (435)
Q Consensus 314 ~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
+|..||.|..+.++.+. .|.++||+||+|.+.++|..|+..|||..+.+..+.|..+.. +.+....+...+.+.
T Consensus 187 ~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk-----k~e~~~~l~~~~~~~ 260 (369)
T KOG0123|consen 187 LFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK-----KSEREAELKRKFEQE 260 (369)
T ss_pred hhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc-----chhhHHHHhhhhHhh
Confidence 99999999999999985 477999999999999999999999999999999999999844 444444444444443
Q ss_pred HHHH
Q 013837 394 AIQK 397 (435)
Q Consensus 394 ~~~~ 397 (435)
....
T Consensus 261 ~~~~ 264 (369)
T KOG0123|consen 261 FAKR 264 (369)
T ss_pred hhhc
Confidence 3333
No 35
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.84 E-value=1e-19 Score=154.23 Aligned_cols=185 Identities=22% Similarity=0.308 Sum_probs=145.3
Q ss_pred CCeEEEcCCCCCCCHHHHHH----HHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 174 ARRVYVGGLPPLANEQAIAT----FFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 174 ~~~l~V~nlp~~~t~~~l~~----~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
..||||.||+..+..++|+. +|++||.|+. |....+.+.+|.|||.|.+.+.|..|+ +|+|..+.|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ild---------I~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg 79 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILD---------ISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYG 79 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEE---------EEecCCCCccCceEEEecChhHHHHHHHHhcCCcccC
Confidence 34999999999999999888 9999999765 777778889999999999999999999 799999999
Q ss_pred ceEEEcCCCCCCcchhhcCCCCCCCC---------------Cccc-----cccccccC-CCCCCCCCCeEEEcCCCCCCC
Q 013837 249 VAVRVRRPTDYNPTLAAALGPGQPSP---------------NLNL-----AAVGLASG-AIGGAEGPDRVFVGGLPYYFT 307 (435)
Q Consensus 249 ~~l~v~~~~~~~~~~~~~~~~~~~~~---------------~~~~-----~~~~~~~~-~~~~~~~~~~l~V~nLp~~~t 307 (435)
+++.|+|++..........+...... ..+. ......+. ......+...||+.|||..++
T Consensus 80 K~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~ 159 (221)
T KOG4206|consen 80 KPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESE 159 (221)
T ss_pred chhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchh
Confidence 99999999876554443221110000 0000 00000000 122245567899999999999
Q ss_pred HHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC-CeEEEEEEcc
Q 013837 308 ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG-DKTLTVRRAT 372 (435)
Q Consensus 308 e~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~-g~~l~V~~a~ 372 (435)
.+.|..+|+.|.....|.++... .+.|||+|.+...|..|..+|+|..|- ...+.|.|++
T Consensus 160 ~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 160 SEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999999999999988753 579999999999999999999999996 8999999884
No 36
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.82 E-value=4.9e-19 Score=175.84 Aligned_cols=80 Identities=19% Similarity=0.281 Sum_probs=67.4
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l 251 (435)
..++|||+|||+.+++++|+++|+.||.|..+. .+.+..++.++|||||+|.+.++|.+|+ .||++.|+|+.|
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svr------l~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~L 276 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQ------LARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYL 276 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEE------EEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 457999999999999999999999999875421 1222235668999999999999999999 699999999999
Q ss_pred EEcCCCC
Q 013837 252 RVRRPTD 258 (435)
Q Consensus 252 ~v~~~~~ 258 (435)
.|.++..
T Consensus 277 rV~kAi~ 283 (612)
T TIGR01645 277 RVGKCVT 283 (612)
T ss_pred EEEecCC
Confidence 9987653
No 37
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=3.7e-18 Score=138.91 Aligned_cols=174 Identities=26% Similarity=0.358 Sum_probs=128.1
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC---CCcEEEEEecCHHHHHHHH-HhCCceec
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH---EKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~---~~g~afv~f~~~~~a~~a~-~l~~~~~~ 247 (435)
...++|||+|||.++-+.+|.++|.+||.| ..+.+.. .-.||||+|+++.+|+.|+ .-+|..+.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i------------~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdyd 71 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRI------------REIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD 71 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcce------------EEEEeccCCCCCCeeEEEecCccchhhhhhcccccccC
Confidence 457899999999999999999999999984 4444433 2479999999999999999 69999999
Q ss_pred CceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCC---CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEE
Q 013837 248 GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGA---IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324 (435)
Q Consensus 248 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v 324 (435)
|+.|.|+++......... -+... .....+...+. ...-.....|.|.+||...+++||++++.+.|.|...
T Consensus 72 g~rLRVEfprggr~s~~~-~G~y~-----gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfa 145 (241)
T KOG0105|consen 72 GCRLRVEFPRGGRSSSDR-RGSYS-----GGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFA 145 (241)
T ss_pred cceEEEEeccCCCccccc-ccccC-----CCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeee
Confidence 999999988755311100 00000 00000000000 0111223579999999999999999999999999888
Q ss_pred EEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC--CeEEEEEE
Q 013837 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG--DKTLTVRR 370 (435)
Q Consensus 325 ~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~--g~~l~V~~ 370 (435)
.+.+| |++.|+|...|+-.-|+..|....+. |.+.-+..
T Consensus 146 dv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 146 DVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred eeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 88876 47899999999999999999877663 55444444
No 38
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.79 E-value=1.4e-18 Score=143.68 Aligned_cols=85 Identities=22% Similarity=0.545 Sum_probs=80.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
...++|||+|||+.+||++|+++|++||.|..|.|+.++.|+.++|||||+|.+.++|++||+.|||..|.|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 013837 372 TASSG 376 (435)
Q Consensus 372 ~~~~~ 376 (435)
..+..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76543
No 39
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.74 E-value=2.5e-17 Score=153.72 Aligned_cols=170 Identities=21% Similarity=0.254 Sum_probs=132.8
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceEE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR 252 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l~ 252 (435)
....|.+++||+.+|++||.+||..++. ...+.....++..|-|||||.+.+++.+||+.+...+..+.|.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~I---------~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIE 79 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCGI---------ENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIE 79 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCce---------eEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEE
Confidence 4567999999999999999999998852 1223334447788999999999999999999999999999999
Q ss_pred EcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeecCC
Q 013837 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHG-FDLVKDRD 331 (435)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~-v~i~~~~~ 331 (435)
|-.+.......... .. ..........|-+++||+.||++||.++|+..-.|.. |.++.++
T Consensus 80 Vf~~~~~e~d~~~~---------------~~---g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~- 140 (510)
T KOG4211|consen 80 VFTAGGAEADWVMR---------------PG---GPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ- 140 (510)
T ss_pred EEccCCcccccccc---------------CC---CCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-
Confidence 98654332211000 00 0011123457899999999999999999998866655 5566665
Q ss_pred CCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 332 TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 332 tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
.+.+.|.|||+|++.+.|++||. -|...|+-+-|.|-.+
T Consensus 141 rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 141 RGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehh
Confidence 47799999999999999999999 5888999999999877
No 40
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.72 E-value=1.3e-16 Score=155.02 Aligned_cols=191 Identities=20% Similarity=0.259 Sum_probs=139.0
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
.......|+|+|||..+..++|..+|..||.| ..+.+....-.|+|+|.++.+|..|+ .|....+..
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i------------~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~ 448 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEI------------GRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKS 448 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhccccc------------ceeecCcccceeeeeecCccchHHHHHHhchhhhcc
Confidence 44566889999999999999999999999984 33444444456999999999999999 599999999
Q ss_pred ceEEEcCCCCCCcchhh-----cCCCCCC---CCCccccccc---cc-cC----C-----CCCCCCCCeEEEcCCCCCCC
Q 013837 249 VAVRVRRPTDYNPTLAA-----ALGPGQP---SPNLNLAAVG---LA-SG----A-----IGGAEGPDRVFVGGLPYYFT 307 (435)
Q Consensus 249 ~~l~v~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~---~~-~~----~-----~~~~~~~~~l~V~nLp~~~t 307 (435)
.++.+.|+-.......+ ....... .+........ .. .. . .......++|||.||++.+|
T Consensus 449 ~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt 528 (725)
T KOG0110|consen 449 APLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTT 528 (725)
T ss_pred CccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccc
Confidence 99988876433222110 0000000 0000000000 00 00 0 01112223499999999999
Q ss_pred HHHHHHHHHhcCCeeEEEEeecCCCC---CcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 308 ETQIKELLESFGTLHGFDLVKDRDTG---NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 308 e~~l~~~F~~~G~v~~v~i~~~~~tg---~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
.++|..+|.++|.|+.+.|.+.++.. .+.|||||+|.+.++|+.|+..|+|..|.|+.|.|.++.
T Consensus 529 ~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 529 LEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99999999999999999888775421 255999999999999999999999999999999999998
No 41
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.70 E-value=2.4e-16 Score=143.48 Aligned_cols=232 Identities=16% Similarity=0.155 Sum_probs=153.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCC-CcEEEEEecCHHHHHHHH-HhCCceecC--ce
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE-KKFAFVEMRTVEEASNAM-ALDGIIFEG--VA 250 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~-~g~afv~f~~~~~a~~a~-~l~~~~~~g--~~ 250 (435)
-.++|+|+-+-++-+-|..+|+.||.|+ ..+.+.++ .-.|.|+|.+.+.|..|. .|+|..|.. +.
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~Vl-----------KIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCt 219 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVL-----------KIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCT 219 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeE-----------EEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeE
Confidence 4678999999999999999999999863 22333334 446999999999999999 799987743 67
Q ss_pred EEEcCCCC--------------CCcchhhcCCCCCCCCCc-------cccc------------c-ccccCCCCCCC-CCC
Q 013837 251 VRVRRPTD--------------YNPTLAAALGPGQPSPNL-------NLAA------------V-GLASGAIGGAE-GPD 295 (435)
Q Consensus 251 l~v~~~~~--------------~~~~~~~~~~~~~~~~~~-------~~~~------------~-~~~~~~~~~~~-~~~ 295 (435)
|+|.+++. +... ....+..++.... +..+ . ........+.. ...
T Consensus 220 LrId~Sklt~LnvKynndkSRDyTnp-~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~ 298 (492)
T KOG1190|consen 220 LRIDFSKLTDLNVKYNNDKSRDYTNP-DLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANV 298 (492)
T ss_pred EEeehhhcccceeeccccccccccCC-CCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCce
Confidence 77765442 1110 1111111110000 0000 0 00000111111 246
Q ss_pred eEEEcCCC-CCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 013837 296 RVFVGGLP-YYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (435)
Q Consensus 296 ~l~V~nLp-~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~ 374 (435)
.|.|.||. ..+|.+-|..+|..||.|..|+|+..+. --|+|+|.+...|+.|++.|+|..|.|+.|+|.+++..
T Consensus 299 vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 299 VLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred EEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 78888885 5689999999999999999999998752 46999999999999999999999999999999999877
Q ss_pred CCCCch--HHHHHHHHHHHHHHHHHHHhhccCCcccCCCCCCCCCCcceeEEeccccc
Q 013837 375 SGQSKT--EQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEMMK 430 (435)
Q Consensus 375 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~l~n~~~ 430 (435)
.-+.+. +.+..+...+.+.++.+ +..++.. ......||+..++|.|+..
T Consensus 374 ~vqlp~egq~d~glT~dy~~spLhr-fkkpgsK------N~~ni~PpsatlHlsnip~ 424 (492)
T KOG1190|consen 374 NVQLPREGQEDQGLTKDYGNSPLHR-FKKPGSK------NYQNIFPPSATLHLSNIPP 424 (492)
T ss_pred cccCCCCCCccccccccCCCCchhh-ccCcccc------cccccCCchhheeeccCCc
Confidence 644332 22223333334444444 2233322 2333467888999998863
No 42
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.68 E-value=1.3e-15 Score=127.90 Aligned_cols=179 Identities=22% Similarity=0.306 Sum_probs=120.3
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC----CCcEEEEEecCHHHHHHHH-HhCCc
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH----EKKFAFVEMRTVEEASNAM-ALDGI 244 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~----~~g~afv~f~~~~~a~~a~-~l~~~ 244 (435)
....-+||||.+||.++...+|+.+|..|--..+ ..+. .+.+ .+-+|||.|.+...|..|+ .|||.
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEg--------slLK-~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGv 100 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEG--------SLLK-YTSKGDQVCKPVAFATFTSHQFALAAMNALNGV 100 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccc--------eeee-eccCCCccccceEEEEecchHHHHHHHHHhcCe
Confidence 3445789999999999999999999998832111 1211 1222 2479999999999999999 79999
Q ss_pred eec---CceEEEcCCCCCCcchhhcC----CCCCCCCCc----------------------------ccccc--------
Q 013837 245 IFE---GVAVRVRRPTDYNPTLAAAL----GPGQPSPNL----------------------------NLAAV-------- 281 (435)
Q Consensus 245 ~~~---g~~l~v~~~~~~~~~~~~~~----~~~~~~~~~----------------------------~~~~~-------- 281 (435)
.|+ +..|+|+.++.......... ++....... +..+.
T Consensus 101 rFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~ 180 (284)
T KOG1457|consen 101 RFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKS 180 (284)
T ss_pred eeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccch
Confidence 996 57788887664432211110 000000000 00000
Q ss_pred -------cc----------ccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEc
Q 013837 282 -------GL----------ASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQ 344 (435)
Q Consensus 282 -------~~----------~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~ 344 (435)
.. ..........+.+|||.||..+|||++|+.+|+.|-....++|--. .| -..|||+|+
T Consensus 181 ~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~ 256 (284)
T KOG1457|consen 181 EALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFE 256 (284)
T ss_pred hhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHH
Confidence 00 0001122234468999999999999999999999988766665432 23 347999999
Q ss_pred CHHHHHHHHHHhCCcee
Q 013837 345 DPAVTDIACAALNGLKM 361 (435)
Q Consensus 345 ~~~~A~~Al~~l~g~~~ 361 (435)
+.+.|..|+..|+|..|
T Consensus 257 ~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 257 EIEQATDAMNHLQGNLL 273 (284)
T ss_pred HHHHHHHHHHHhhccee
Confidence 99999999999999887
No 43
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.66 E-value=7e-16 Score=111.96 Aligned_cols=70 Identities=27% Similarity=0.644 Sum_probs=67.1
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 013837 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (435)
Q Consensus 297 l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (435)
|||+|||..+|+++|+++|+.||.|..+.+..+ .++..+|+|||+|.+.++|.+|++.|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999997 5788999999999999999999999999999999985
No 44
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.66 E-value=4.3e-16 Score=147.29 Aligned_cols=84 Identities=26% Similarity=0.428 Sum_probs=79.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
....++|||+|||+.+|+++|+++|+.||.|+.|+|+.++.|+.++|||||+|.++++|.+||+.|||..|.++.|+|.|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 013837 371 ATAS 374 (435)
Q Consensus 371 a~~~ 374 (435)
+++.
T Consensus 184 a~p~ 187 (346)
T TIGR01659 184 ARPG 187 (346)
T ss_pred cccc
Confidence 8764
No 45
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=5.9e-16 Score=132.03 Aligned_cols=82 Identities=29% Similarity=0.441 Sum_probs=79.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
..++|-|.||+.+++|.+|.++|.+||.|..|.|.+|++||.++|||||.|.+.++|++||..|||+-+..-.|.|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 013837 373 AS 374 (435)
Q Consensus 373 ~~ 374 (435)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 75
No 46
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=3.1e-16 Score=134.73 Aligned_cols=166 Identities=20% Similarity=0.296 Sum_probs=125.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceEEE
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 253 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~v 253 (435)
..|||++||+.+.+.+|..||..||.+.. +.+ -.||+||+|.+..+|..|+ .+++..|.|-.+.|
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d------------~~m--k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vv 67 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPD------------ADM--KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVV 67 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccc------------cee--ecccceeccCchhhhhcccchhcCceecceeeee
Confidence 36999999999999999999999998533 222 2478999999999999999 79999999988888
Q ss_pred cCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCC
Q 013837 254 RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG 333 (435)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg 333 (435)
.++....-.. +.. ....... ....-.......+.|+|.++...+.+++|.+.|.++|.+....+
T Consensus 68 e~~r~~~~~~----g~~--~~g~r~~---~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------- 131 (216)
T KOG0106|consen 68 EHARGKRRGR----GRP--RGGDRRS---DSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------- 131 (216)
T ss_pred eccccccccc----CCC--CCCCccc---hhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------
Confidence 8876432111 000 0000000 00001111234467999999999999999999999999854443
Q ss_pred CcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 334 NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 334 ~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
..++|||+|.+.++|..||..|+|..+.|+.|++.+.
T Consensus 132 -~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 132 -RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred -hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 2568999999999999999999999999999999443
No 47
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.63 E-value=4.8e-15 Score=136.00 Aligned_cols=191 Identities=21% Similarity=0.286 Sum_probs=136.0
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHH-HHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH-hCCceecCc
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQV-MTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGV 249 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~-G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~-l~~~~~~g~ 249 (435)
...+.+||.|||+++..++|+++|... |+|..+. +.....++.+|||.|||+++|.+++|++ ||.+.+.|+
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yve-------Ll~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR 114 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVE-------LLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGR 114 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeee-------eecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCc
Confidence 345679999999999999999999854 4432211 1222346789999999999999999995 999999999
Q ss_pred eEEEcCCCCCCcchhhcC---------------------------------CCCCCCCC-------cc-----------c
Q 013837 250 AVRVRRPTDYNPTLAAAL---------------------------------GPGQPSPN-------LN-----------L 278 (435)
Q Consensus 250 ~l~v~~~~~~~~~~~~~~---------------------------------~~~~~~~~-------~~-----------~ 278 (435)
+|.|+-..+.....-... +....... .+ .
T Consensus 115 ~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~ 194 (608)
T KOG4212|consen 115 ELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNY 194 (608)
T ss_pred eEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhh
Confidence 999985543211100000 00000000 00 0
Q ss_pred cccccc-----cCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHH
Q 013837 279 AAVGLA-----SGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 353 (435)
Q Consensus 279 ~~~~~~-----~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al 353 (435)
...+.+ +.-.-.+....++||.||.+.+....|++.|.-.|.|..|.+-.+++ |.++|||.++|.++-+|.+||
T Consensus 195 ~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaI 273 (608)
T KOG4212|consen 195 NLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAI 273 (608)
T ss_pred hcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHH
Confidence 000000 00011233456799999999999999999999999999999999986 799999999999999999999
Q ss_pred HHhCCceeCCeEEEEEE
Q 013837 354 AALNGLKMGDKTLTVRR 370 (435)
Q Consensus 354 ~~l~g~~~~g~~l~V~~ 370 (435)
..|++.-+..++.++.+
T Consensus 274 sml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 274 SMLDRQGLFDRRMTVRL 290 (608)
T ss_pred HhhccCCCccccceeec
Confidence 99988776777777776
No 48
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=5e-15 Score=132.92 Aligned_cols=199 Identities=19% Similarity=0.251 Sum_probs=136.5
Q ss_pred chhhcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCce
Q 013837 167 TQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGII 245 (435)
Q Consensus 167 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~ 245 (435)
-++..+.-.+|||..+.++.+|+||+..|+.||+|+.|.+ -.......++||+||||.+......|+ .||=+.
T Consensus 203 vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~L------Ar~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFD 276 (544)
T KOG0124|consen 203 VQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQL------ARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFD 276 (544)
T ss_pred HHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEe------eccCCCCCccceeeEEeccccchHHHhhhcchhh
Confidence 3444566789999999999999999999999999776542 223334568999999999999999999 599999
Q ss_pred ecCceEEEcCCCCCCcchhhcC--------------------------------CC-------------CCCCCCccccc
Q 013837 246 FEGVAVRVRRPTDYNPTLAAAL--------------------------------GP-------------GQPSPNLNLAA 280 (435)
Q Consensus 246 ~~g~~l~v~~~~~~~~~~~~~~--------------------------------~~-------------~~~~~~~~~~~ 280 (435)
|+|..|.|..+........... +. .++...+....
T Consensus 277 LGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~ 356 (544)
T KOG0124|consen 277 LGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAV 356 (544)
T ss_pred cccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccc
Confidence 9999999976542221100000 00 00000000000
Q ss_pred c-----c---------------------------cc------------------cC-------------CC---------
Q 013837 281 V-----G---------------------------LA------------------SG-------------AI--------- 288 (435)
Q Consensus 281 ~-----~---------------------------~~------------------~~-------------~~--------- 288 (435)
. + .. +. +.
T Consensus 357 ~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlv 436 (544)
T KOG0124|consen 357 MAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLV 436 (544)
T ss_pred hhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHH
Confidence 0 0 00 00 00
Q ss_pred ----CCCCCCCeEEEcCC--CCCCC---HHHHHHHHHhcCCeeEEEEeecCCCCCcc----eEEEEEEcCHHHHHHHHHH
Q 013837 289 ----GGAEGPDRVFVGGL--PYYFT---ETQIKELLESFGTLHGFDLVKDRDTGNSK----GYGFCVYQDPAVTDIACAA 355 (435)
Q Consensus 289 ----~~~~~~~~l~V~nL--p~~~t---e~~l~~~F~~~G~v~~v~i~~~~~tg~~~----G~afV~f~~~~~A~~Al~~ 355 (435)
.-....+.|.++|+ |.+++ +.+|.+.|.+||.|..|.|...+.++.-. --.||+|....++.+|+.+
T Consensus 437 MqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~A 516 (544)
T KOG0124|consen 437 MQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQA 516 (544)
T ss_pred HHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHh
Confidence 00123467888998 55554 46899999999999999998876654211 1379999999999999999
Q ss_pred hCCceeCCeEEEEEEc
Q 013837 356 LNGLKMGDKTLTVRRA 371 (435)
Q Consensus 356 l~g~~~~g~~l~V~~a 371 (435)
|+|.+|+|+.|..+.-
T Consensus 517 LdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 517 LDGRFFGGRKVVAEVY 532 (544)
T ss_pred hccceecCceeehhhh
Confidence 9999999999887653
No 49
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.61 E-value=4.5e-14 Score=128.80 Aligned_cols=184 Identities=18% Similarity=0.128 Sum_probs=135.2
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC-CCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 174 ARRVYVGGLPP-LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH-EKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 174 ~~~l~V~nlp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~-~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
.+.|.|.||.. .+|.+.|..+|.-||. |..+++-. .+-.|.|+|.+...|..|+ .|+|+.|.|++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGd------------VqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~ 364 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGD------------VQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKK 364 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcc------------eEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCce
Confidence 67899999976 5899999999999998 44454433 4579999999999999999 59999999999
Q ss_pred EEEcCCCCCCcchhhcCCCCCCC--CCccccccccc-cC---CCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEE
Q 013837 251 VRVRRPTDYNPTLAAALGPGQPS--PNLNLAAVGLA-SG---AIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324 (435)
Q Consensus 251 l~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~---~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v 324 (435)
|.|.+++...-.....-.+.+.. +..+....... ++ ......++.+|.+.|+|..++||+|+++|..-|.....
T Consensus 365 lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vka 444 (492)
T KOG1190|consen 365 LRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKA 444 (492)
T ss_pred EEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEe
Confidence 99999887654433222111110 11111000000 00 11122456789999999999999999999999887554
Q ss_pred EEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCe-EEEEEEccC
Q 013837 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK-TLTVRRATA 373 (435)
Q Consensus 325 ~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~-~l~V~~a~~ 373 (435)
..... +.+.+|+++++++|+|..|+..+|.+.+++. .|+|.|++.
T Consensus 445 fkff~----kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 445 FKFFQ----KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred eeecC----CCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 44332 2355999999999999999999999999855 999999864
No 50
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=2.1e-15 Score=122.26 Aligned_cols=78 Identities=22% Similarity=0.444 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
..++|||+||+..+++.||..+|..||.|..|+|...+ -|||||||+++.+|..|+..|+|..|+|..|+|++++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 35789999999999999999999999999999998864 6899999999999999999999999999999999986
Q ss_pred CCC
Q 013837 373 ASS 375 (435)
Q Consensus 373 ~~~ 375 (435)
-..
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 553
No 51
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.61 E-value=1.5e-14 Score=129.37 Aligned_cols=197 Identities=16% Similarity=0.136 Sum_probs=134.4
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEE---EecCCCcEEEEEecCHHHHHHHH-HhCCceec
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV---YINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~---~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~ 247 (435)
.....|||.|||.++|-+++.++|..+|-|...... +.+.+.+ .-|.-+|-|.|.|...+++..|+ .|++..|.
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t--~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQT--GEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCC--CCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 445569999999999999999999999987543221 1111111 12445799999999999999999 59999999
Q ss_pred CceEEEcCCCCCCcchhhcCCC-CCCCCCc------ccccccccc--CCCCCCCCCCeEEEcCCCCC----CC-------
Q 013837 248 GVAVRVRRPTDYNPTLAAALGP-GQPSPNL------NLAAVGLAS--GAIGGAEGPDRVFVGGLPYY----FT------- 307 (435)
Q Consensus 248 g~~l~v~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~--~~~~~~~~~~~l~V~nLp~~----~t------- 307 (435)
|+.|.|..++=.....-..... ....... ........+ .........++|.|.||-.. .+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 9999999775221110000000 0000000 000000011 11223345678999998422 23
Q ss_pred HHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 013837 308 ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (435)
Q Consensus 308 e~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~ 374 (435)
.++|.+.|++||.|..|.|.-.. +.|.+-|.|.+.++|..||+.|+|++|+|+.|....-.-+
T Consensus 290 kedl~eec~K~G~v~~vvv~d~h----PdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDRH----PDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHHhCCcceEEEeccC----CCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 36788899999999999876432 5789999999999999999999999999999998876443
No 52
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.60 E-value=1.8e-15 Score=125.64 Aligned_cols=86 Identities=23% Similarity=0.420 Sum_probs=80.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 013837 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (435)
Q Consensus 290 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~ 369 (435)
..+....|.|-||-+.+|.++|..+|++||.|-+|.|+.|+-|+.++|||||.|....+|+.|+++|+|..|.|+.|.|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCC
Q 013837 370 RATASS 375 (435)
Q Consensus 370 ~a~~~~ 375 (435)
+|.-..
T Consensus 89 ~arygr 94 (256)
T KOG4207|consen 89 MARYGR 94 (256)
T ss_pred hhhcCC
Confidence 996554
No 53
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.60 E-value=5.1e-15 Score=107.40 Aligned_cols=70 Identities=27% Similarity=0.580 Sum_probs=65.2
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 013837 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (435)
Q Consensus 297 l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (435)
|||+|||..+++++|.++|+.||.|..+.+..+++ |..+|+|||+|.+.++|.+|++.++|..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999977 89999999999999999999999999999999884
No 54
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=6.6e-15 Score=130.67 Aligned_cols=86 Identities=28% Similarity=0.584 Sum_probs=78.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 013837 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (435)
Q Consensus 288 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (435)
.......+.|+|.|||+..-+.||+.+|++||.|++|.|+.+. .-+|||+||.|++.++|.+|-.+|||..+.|+.|.
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 3445667899999999999999999999999999999999973 45799999999999999999999999999999999
Q ss_pred EEEccCCC
Q 013837 368 VRRATASS 375 (435)
Q Consensus 368 V~~a~~~~ 375 (435)
|..|+...
T Consensus 168 Vn~ATarV 175 (376)
T KOG0125|consen 168 VNNATARV 175 (376)
T ss_pred Eeccchhh
Confidence 99997643
No 55
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=3.5e-16 Score=127.26 Aligned_cols=80 Identities=34% Similarity=0.684 Sum_probs=76.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~ 373 (435)
...|||+|||+.+||.||.-+|++||.|+.|.+++|+.||+++||||+.|++..+...|+.-|||..|.|++|+|..+..
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999998754
No 56
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.59 E-value=1.1e-14 Score=144.73 Aligned_cols=117 Identities=21% Similarity=0.225 Sum_probs=94.3
Q ss_pred CHHHHHHHH-HhCCceecCceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHH
Q 013837 231 TVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTET 309 (435)
Q Consensus 231 ~~~~a~~a~-~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~ 309 (435)
-.+.|.+|| +++|..+........+..+.... ........++|||+|||.+++|+
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~------------------------~~~~p~~~~~lFVgnLp~~~tEd 73 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGW------------------------SGVQPGRGCEVFVGKIPRDLYED 73 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcc------------------------cCCCCCCCCEEEeCCCCCCCCHH
Confidence 357788888 69999887766666554221100 00112335789999999999999
Q ss_pred HHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC-CeEEEEEEcc
Q 013837 310 QIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG-DKTLTVRRAT 372 (435)
Q Consensus 310 ~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~-g~~l~V~~a~ 372 (435)
+|.++|++||.|..|+|++| .+|.++|||||+|.+.++|.+||+.||+..|. |+.|.|..+.
T Consensus 74 ~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 74 ELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred HHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 99999999999999999999 78999999999999999999999999999985 7888887664
No 57
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.58 E-value=3.8e-15 Score=123.16 Aligned_cols=88 Identities=18% Similarity=0.357 Sum_probs=73.2
Q ss_pred chhhcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCce
Q 013837 167 TQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGII 245 (435)
Q Consensus 167 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~ 245 (435)
........++|||+|||+.+|+++|+++|.+||.|..+. ++.+..++.++|||||+|.+.++|+.|+ .||+..
T Consensus 27 ~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~------i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~ 100 (144)
T PLN03134 27 LGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAK------VIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKE 100 (144)
T ss_pred cccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEE------EEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE
Confidence 344455678999999999999999999999999875522 2333345678999999999999999999 599999
Q ss_pred ecCceEEEcCCCCCC
Q 013837 246 FEGVAVRVRRPTDYN 260 (435)
Q Consensus 246 ~~g~~l~v~~~~~~~ 260 (435)
|.|+.|+|.++....
T Consensus 101 i~Gr~l~V~~a~~~~ 115 (144)
T PLN03134 101 LNGRHIRVNPANDRP 115 (144)
T ss_pred ECCEEEEEEeCCcCC
Confidence 999999999887543
No 58
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=5.7e-15 Score=113.20 Aligned_cols=80 Identities=25% Similarity=0.402 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
...+||||+||.+.+||+.|.++|+++|.|..|.+-.|+.+..+.|||||+|.+.++|..|+.-++|..+..++|.|.|-
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 34689999999999999999999999999999999899888899999999999999999999999999999999999985
No 59
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.7e-14 Score=126.57 Aligned_cols=82 Identities=27% Similarity=0.506 Sum_probs=78.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
++-+||||.-|++.++|.+|+.+|+.||.|+.|.|+.++.||+++|||||+|+++-+...|.+..+|.+|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cC
Q 013837 372 TA 373 (435)
Q Consensus 372 ~~ 373 (435)
..
T Consensus 179 Rg 180 (335)
T KOG0113|consen 179 RG 180 (335)
T ss_pred cc
Confidence 43
No 60
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.55 E-value=3.3e-14 Score=125.54 Aligned_cols=75 Identities=21% Similarity=0.353 Sum_probs=70.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
.++|||+|||+.+|+++|+++|+.||.|..|.|+.+.. .+|||||+|.+.++|..||. |||..|.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 46899999999999999999999999999999998854 47899999999999999996 99999999999999986
No 61
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=3.4e-14 Score=104.71 Aligned_cols=81 Identities=22% Similarity=0.472 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
+.....|||+|||+.+|.+++.++|.+||.|..|+|-..++ .+|.|||.|+++.+|.+|+..|+|+.+.++.|.|-|
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 34456799999999999999999999999999999987765 489999999999999999999999999999999999
Q ss_pred ccCC
Q 013837 371 ATAS 374 (435)
Q Consensus 371 a~~~ 374 (435)
-.+.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 7443
No 62
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=1.6e-14 Score=122.89 Aligned_cols=81 Identities=26% Similarity=0.537 Sum_probs=75.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
..++|||+||++.++.++|+..|++||.|++..|+.|+.||++|||+||.|.+.++|.+|++. -.-.|+|++..|.+|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 346899999999999999999999999999999999999999999999999999999999984 4578999999999987
Q ss_pred CC
Q 013837 373 AS 374 (435)
Q Consensus 373 ~~ 374 (435)
..
T Consensus 90 lg 91 (247)
T KOG0149|consen 90 LG 91 (247)
T ss_pred hc
Confidence 63
No 63
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=2e-14 Score=111.17 Aligned_cols=81 Identities=27% Similarity=0.401 Sum_probs=77.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~ 374 (435)
-.|||.++...+||++|.+.|..||.|+.|.+-.|.-||-.+|||+|+|++.++|++|+.+|||..|.|..|.|.||..+
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred C
Q 013837 375 S 375 (435)
Q Consensus 375 ~ 375 (435)
.
T Consensus 153 g 153 (170)
T KOG0130|consen 153 G 153 (170)
T ss_pred C
Confidence 4
No 64
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.51 E-value=2.9e-14 Score=116.42 Aligned_cols=82 Identities=27% Similarity=0.427 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
.+...+|||+||+..++++.|.++|-+.|+|+.+.|++|+.+...+|||||+|.++|+|.-|++.||..++.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 35567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 013837 371 AT 372 (435)
Q Consensus 371 a~ 372 (435)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 97
No 65
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.2e-14 Score=121.74 Aligned_cols=84 Identities=20% Similarity=0.400 Sum_probs=80.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
...++|||++|...+||.-|...|-+||.|..|.|+.|.++++++|||||+|...|+|.+||..||+.+|.|++|+|.||
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 013837 372 TASS 375 (435)
Q Consensus 372 ~~~~ 375 (435)
++-.
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8754
No 66
>PLN03213 repressor of silencing 3; Provisional
Probab=99.50 E-value=8.6e-14 Score=129.77 Aligned_cols=78 Identities=18% Similarity=0.370 Sum_probs=71.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCH--HHHHHHHHHhCCceeCCeEEEEEE
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDP--AVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~--~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
....|||+||++.+|++||..+|..||.|..|.|++ +|| +|||||+|.+. .++.+||..|||..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 346899999999999999999999999999999994 567 99999999987 689999999999999999999999
Q ss_pred ccCC
Q 013837 371 ATAS 374 (435)
Q Consensus 371 a~~~ 374 (435)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9654
No 67
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.49 E-value=1.8e-13 Score=134.19 Aligned_cols=78 Identities=19% Similarity=0.397 Sum_probs=71.5
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
....++||||++|+..++|.||.++|+.||. |..+.+..++|||||.+....+|.+|| +|++..+.+
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGe------------iqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~ 484 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGE------------IQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVAD 484 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhccc------------ceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccc
Confidence 4457899999999999999999999999998 677778889999999999999999999 699999999
Q ss_pred ceEEEcCCCCC
Q 013837 249 VAVRVRRPTDY 259 (435)
Q Consensus 249 ~~l~v~~~~~~ 259 (435)
+.|+|.|+..+
T Consensus 485 k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 485 KTIKIAWAVGK 495 (894)
T ss_pred eeeEEeeeccC
Confidence 99999998654
No 68
>smart00362 RRM_2 RNA recognition motif.
Probab=99.48 E-value=2.8e-13 Score=98.30 Aligned_cols=72 Identities=39% Similarity=0.691 Sum_probs=67.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 013837 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (435)
Q Consensus 296 ~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~ 369 (435)
+|+|+|||..+++++|.++|..||.|..+.+..++ +.++|+|||+|.+.++|..|+..++|..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999988875 6788999999999999999999999999999999873
No 69
>smart00360 RRM RNA recognition motif.
Probab=99.46 E-value=3.4e-13 Score=97.48 Aligned_cols=71 Identities=38% Similarity=0.700 Sum_probs=67.1
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 013837 299 VGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (435)
Q Consensus 299 V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~ 369 (435)
|+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988788999999999999999999999999999999999873
No 70
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.46 E-value=4.3e-13 Score=116.50 Aligned_cols=75 Identities=15% Similarity=0.254 Sum_probs=69.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
..+|||+||++.+|+++|+++|+.||.|..|.|+.+. ..+|||||+|.++++|..|+. |||..|.++.|.|....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4689999999999999999999999999999999984 456899999999999999996 99999999999999865
No 71
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=4.4e-13 Score=123.92 Aligned_cols=84 Identities=26% Similarity=0.398 Sum_probs=78.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCcee-CCeEEEEEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM-GDKTLTVRR 370 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~-~g~~l~V~~ 370 (435)
...+-|||+.||.++.|++|.-+|++.|.|-+++|++|+.+|.++|||||.|.+.++|+.||+.||+++| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 4457899999999999999999999999999999999999999999999999999999999999999999 499999988
Q ss_pred ccCCC
Q 013837 371 ATASS 375 (435)
Q Consensus 371 a~~~~ 375 (435)
+..+.
T Consensus 161 Svan~ 165 (506)
T KOG0117|consen 161 SVANC 165 (506)
T ss_pred eeecc
Confidence 76554
No 72
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.44 E-value=1.3e-13 Score=124.69 Aligned_cols=191 Identities=19% Similarity=0.170 Sum_probs=132.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe--cCCCcEEEEEecCHHHHHHHHHhCCceecCceEE
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI--NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR 252 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~--~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l~ 252 (435)
--|-+++||+++|+.++.+||.+-..|.+ ..+.|.-+.- ++-.|-|||.|..+++|..||.-+...|+.+.|.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~-----g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIE 236 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTG-----GTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIE 236 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccC-----CccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHH
Confidence 35788999999999999999975433322 1233555543 4567999999999999999998888888888888
Q ss_pred EcCCCCCCcchhhcCCCCCCCCCc-cccccc-cccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC-eeE--EEEe
Q 013837 253 VRRPTDYNPTLAAALGPGQPSPNL-NLAAVG-LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT-LHG--FDLV 327 (435)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-v~~--v~i~ 327 (435)
+.+++...-..........+.... ...... .............||-+++||+.+|.|||.++|..|-. |.. |.++
T Consensus 237 lFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv 316 (508)
T KOG1365|consen 237 LFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMV 316 (508)
T ss_pred HHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEE
Confidence 876543221111000000000000 000000 00011112233678999999999999999999999875 333 6777
Q ss_pred ecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 328 KDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 328 ~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
.+. .|.+.|.|||+|.+.+.|.+|....|.....++.|.|--+
T Consensus 317 ~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 317 LNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred EcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 764 4889999999999999999999999988888999998876
No 73
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.44 E-value=2.2e-12 Score=118.72 Aligned_cols=74 Identities=23% Similarity=0.477 Sum_probs=68.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
..++|||+|||+++|++.|++-|..||.|+.+.|+. .|+++| .|.|.++++|+.|+..|+|..+.|+.|+|.|.
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 347899999999999999999999999999998844 588887 79999999999999999999999999999984
No 74
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.44 E-value=2.2e-13 Score=115.95 Aligned_cols=81 Identities=21% Similarity=0.409 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHH----HHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIKE----LLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~----~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (435)
.+..||||.||+..+..++|+. +|+.||.|++|...+ |.+.+|.|||.|.+.+.|..|+.+|+|+.|.|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3344999999999999998887 999999998887776 467899999999999999999999999999999999
Q ss_pred EEEccCCC
Q 013837 368 VRRATASS 375 (435)
Q Consensus 368 V~~a~~~~ 375 (435)
|.||+.+.
T Consensus 84 iqyA~s~s 91 (221)
T KOG4206|consen 84 IQYAKSDS 91 (221)
T ss_pred eecccCcc
Confidence 99998765
No 75
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.43 E-value=3.7e-12 Score=115.09 Aligned_cols=165 Identities=20% Similarity=0.167 Sum_probs=129.3
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH---hCCceecC
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA---LDGIIFEG 248 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~---l~~~~~~g 248 (435)
..+-.|+|++|-..++|.+|.+.++.||. |..+.....+..|.|+|++.+.|..|+. -+...+.|
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~------------i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~g 96 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGP------------IAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAG 96 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCc------------eEEEEeccccceeeeeeccccchhhheehhccCcccccC
Confidence 34557999999999999999999999997 5556666678899999999999999993 56677888
Q ss_pred ceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEE--EcCCCCCCCHHHHHHHHHhcCCeeEEEE
Q 013837 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVF--VGGLPYYFTETQIKELLESFGTLHGFDL 326 (435)
Q Consensus 249 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--V~nLp~~~te~~l~~~F~~~G~v~~v~i 326 (435)
+...+.+++...-... ......+...|. |-|--+.+|.+-|..+|...|+|..|.|
T Consensus 97 q~Al~NyStsq~i~R~----------------------g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvI 154 (494)
T KOG1456|consen 97 QQALFNYSTSQCIERP----------------------GDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVI 154 (494)
T ss_pred chhhcccchhhhhccC----------------------CCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEE
Confidence 8888887654321110 011112223333 4565677999999999999999999988
Q ss_pred eecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC--CeEEEEEEccCCC
Q 013837 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG--DKTLTVRRATASS 375 (435)
Q Consensus 327 ~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~--g~~l~V~~a~~~~ 375 (435)
++. +|. .|.|||++.+.|++|..+|||..|. -++|+|+||++..
T Consensus 155 fkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 155 FKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred Eec--cce---eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 875 333 6999999999999999999999884 5899999998764
No 76
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.43 E-value=1e-12 Score=122.72 Aligned_cols=169 Identities=23% Similarity=0.297 Sum_probs=114.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceEE
Q 013837 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVR 252 (435)
Q Consensus 174 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~ 252 (435)
.++|||+|||..+|+++|.++|..||.+..+. .+.+..++..+|||||+|.+.++|..|+ .+++..|.|+.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~------~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~ 188 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVR------LVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLR 188 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEE------eeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeE
Confidence 69999999999999999999999999874421 1233346788999999999999999999 5999999999999
Q ss_pred EcCCCC-CCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC
Q 013837 253 VRRPTD-YNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD 331 (435)
Q Consensus 253 v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~ 331 (435)
|.+... ........ . . ......................+++.+++..++..++..+|..+|.+..+.+.....
T Consensus 189 v~~~~~~~~~~~~~~---~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 189 VQKAQPASQPRSELS---N--N-LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred eeccccccccccccc---c--c-cchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 998653 10000000 0 0 000000000111223334556899999999999999999999999997666665543
Q ss_pred CCCcceEEEEEEcCHHHHHHHHH
Q 013837 332 TGNSKGYGFCVYQDPAVTDIACA 354 (435)
Q Consensus 332 tg~~~G~afV~f~~~~~A~~Al~ 354 (435)
......+.++.+.....+..++.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 263 GKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred CcccccccccchhHHHhhhhhhc
Confidence 33333344444444444444443
No 77
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=3e-13 Score=103.83 Aligned_cols=85 Identities=22% Similarity=0.376 Sum_probs=70.1
Q ss_pred hhhcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceE--EEEecCCCcEEEEEecCHHHHHHHHH-hCCc
Q 013837 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV--NVYINHEKKFAFVEMRTVEEASNAMA-LDGI 244 (435)
Q Consensus 168 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~--~~~~~~~~g~afv~f~~~~~a~~a~~-l~~~ 244 (435)
..+...++||||+||.+.++|++|.++|..+|.|..+ |+ +..+....|||||+|.+.++|..||. ++|.
T Consensus 30 ~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irri--------iMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgt 101 (153)
T KOG0121|consen 30 LEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRI--------IMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGT 101 (153)
T ss_pred HHHHhhcceEEEeeeeeeecHHHHHHHHHhccchhee--------EeccccCCcCccceEEEEEecchhHHHHHHHhccC
Confidence 3456789999999999999999999999999986431 21 11233456999999999999999995 9999
Q ss_pred eecCceEEEcCCCCCC
Q 013837 245 IFEGVAVRVRRPTDYN 260 (435)
Q Consensus 245 ~~~g~~l~v~~~~~~~ 260 (435)
.|..++|.|.|...+.
T Consensus 102 rLddr~ir~D~D~GF~ 117 (153)
T KOG0121|consen 102 RLDDRPIRIDWDAGFV 117 (153)
T ss_pred cccccceeeeccccch
Confidence 9999999999876554
No 78
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.42 E-value=6.6e-13 Score=117.37 Aligned_cols=78 Identities=26% Similarity=0.299 Sum_probs=66.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceEEE
Q 013837 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRV 253 (435)
Q Consensus 174 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l~v 253 (435)
.++|||+|||+.+|+++|++||+.||.|.. |..+.-...+|||||+|.+.++|..||.|+|..|.|+.|.|
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~---------V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~V 74 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEY---------VEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQSVTI 74 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------EEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEE
Confidence 579999999999999999999999998543 22122223579999999999999999999999999999999
Q ss_pred cCCCCCC
Q 013837 254 RRPTDYN 260 (435)
Q Consensus 254 ~~~~~~~ 260 (435)
.++..+.
T Consensus 75 t~a~~~~ 81 (260)
T PLN03120 75 TPAEDYQ 81 (260)
T ss_pred EeccCCC
Confidence 9887664
No 79
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.40 E-value=3e-12 Score=93.33 Aligned_cols=74 Identities=38% Similarity=0.689 Sum_probs=68.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 296 ~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
+|+|+|||..+++++|.++|..||.|..+.+..++.+ ...|+|||+|.+.++|..|++.+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988654 6789999999999999999999999999999999875
No 80
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.40 E-value=6.3e-13 Score=127.40 Aligned_cols=81 Identities=36% Similarity=0.676 Sum_probs=78.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~ 374 (435)
.+|||+|+|+.+++++|.++|+..|.|.+++++.|++||+.+|||||+|.+.++|..|+..|||.++.|+.|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999654
Q ss_pred C
Q 013837 375 S 375 (435)
Q Consensus 375 ~ 375 (435)
+
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 81
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=7.1e-13 Score=108.34 Aligned_cols=79 Identities=22% Similarity=0.420 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
..+.|||+|||..+-+.+|.++|-+||.|..|.|...+ ..-+||||+|++..+|+.||..-+|..++|+.|+|+|+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 35789999999999999999999999999999886653 235799999999999999999999999999999999986
Q ss_pred CC
Q 013837 373 AS 374 (435)
Q Consensus 373 ~~ 374 (435)
-.
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 54
No 82
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.39 E-value=1.8e-12 Score=89.27 Aligned_cols=56 Identities=23% Similarity=0.486 Sum_probs=51.0
Q ss_pred HHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 311 IKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 311 l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
|.++|++||.|..|.+.... .++|||+|.+.++|..|+..|||..|.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999987753 589999999999999999999999999999999996
No 83
>smart00361 RRM_1 RNA recognition motif.
Probab=99.38 E-value=2.7e-12 Score=92.66 Aligned_cols=61 Identities=15% Similarity=0.289 Sum_probs=55.2
Q ss_pred HHHHHHHHH----hcCCeeEEE-EeecCCC--CCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 013837 308 ETQIKELLE----SFGTLHGFD-LVKDRDT--GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (435)
Q Consensus 308 e~~l~~~F~----~~G~v~~v~-i~~~~~t--g~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V 368 (435)
+++|+++|. +||.|..|. |+.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 577888888 999999995 7777666 889999999999999999999999999999999986
No 84
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.36 E-value=3.4e-12 Score=119.10 Aligned_cols=80 Identities=35% Similarity=0.710 Sum_probs=77.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~ 373 (435)
..+|||+|||..+|+++|.++|..||.|..|.|..++.+|.++|||||+|.+.++|..|+..++|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999753
No 85
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.35 E-value=1.8e-12 Score=93.87 Aligned_cols=68 Identities=35% Similarity=0.535 Sum_probs=56.9
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEE-EecCCCcEEEEEecCHHHHHHHHH-hCCceecCceEE
Q 013837 177 VYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV-YINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVAVR 252 (435)
Q Consensus 177 l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~-~~~~~~g~afv~f~~~~~a~~a~~-l~~~~~~g~~l~ 252 (435)
|||+|||.++|+++|+++|..||.+..+ .+.. ..+..++||||+|.+.++|..|++ ++|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~--------~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESI--------KVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEE--------EEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccc--------cccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999986431 1111 124567999999999999999995 999999999885
No 86
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=4.3e-12 Score=113.03 Aligned_cols=84 Identities=21% Similarity=0.360 Sum_probs=70.8
Q ss_pred hhhcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-cCCCcEEEEEecCHHHHHHHH-HhCCce
Q 013837 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-NHEKKFAFVEMRTVEEASNAM-ALDGII 245 (435)
Q Consensus 168 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~-~~~~g~afv~f~~~~~a~~a~-~l~~~~ 245 (435)
.......++|+|.|||+..-+.||+.+|.+||.|++ |..|.- -.+|||+||+|++.++|++|- +|+|..
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~Vld---------VEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~ 160 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLD---------VEIIFNERGSKGFGFVTMENPADADRARAELHGTV 160 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceee---------EEEEeccCCCCccceEEecChhhHHHHHHHhhcce
Confidence 344567789999999999999999999999999754 222222 247999999999999999999 799999
Q ss_pred ecCceEEEcCCCCCC
Q 013837 246 FEGVAVRVRRPTDYN 260 (435)
Q Consensus 246 ~~g~~l~v~~~~~~~ 260 (435)
+.|++|.|..++...
T Consensus 161 VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 161 VEGRKIEVNNATARV 175 (376)
T ss_pred eeceEEEEeccchhh
Confidence 999999999887653
No 87
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.2e-11 Score=117.04 Aligned_cols=173 Identities=23% Similarity=0.245 Sum_probs=115.1
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCc---EEEEEecCHHHHHHHHHhCCceec
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK---FAFVEMRTVEEASNAMALDGIIFE 247 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g---~afv~f~~~~~a~~a~~l~~~~~~ 247 (435)
..-+++|||++||++++|+.|...|..||.++-.+- .. ......-..+| |+|+.|+++......|.---..-.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP---~k-~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~ 331 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWP---GK-ANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEG 331 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecC---CC-ccccccCCCCCcccEEEEEecchHHHHHHHHHHhhccc
Confidence 356789999999999999999999999998643221 00 00111112355 999999999888877621000111
Q ss_pred CceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEE
Q 013837 248 GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLE-SFGTLHGFDL 326 (435)
Q Consensus 248 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~v~~v~i 326 (435)
+..++|.-+....... +.-+ +.+......-......++.+||||++||-.++.++|..+|+ -||.|..+-|
T Consensus 332 ~~yf~vss~~~k~k~V-------QIrP-W~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGI 403 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEV-------QIRP-WVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGI 403 (520)
T ss_pred ceEEEEecCcccccce-------eEEe-eEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEe
Confidence 1222332221111100 0000 00000000111233457788999999999999999999999 7999999999
Q ss_pred eecCCCCCcceEEEEEEcCHHHHHHHHHH
Q 013837 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAA 355 (435)
Q Consensus 327 ~~~~~tg~~~G~afV~f~~~~~A~~Al~~ 355 (435)
-.|++-+-++|-|=|.|.+..+-.+||.+
T Consensus 404 DtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 404 DTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 99988888999999999999999999984
No 88
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=1.2e-12 Score=111.55 Aligned_cols=80 Identities=19% Similarity=0.324 Sum_probs=70.1
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceEE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR 252 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l~ 252 (435)
.-.+|||+||++.+..++|+++|++||+|+..+ +|.+..++++|||+||+|.+.+.|.+|++-.+-.|+|++..
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eav------vitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aN 84 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAV------VITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKAN 84 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEE------EEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccc
Confidence 346899999999999999999999999998743 46777789999999999999999999998777889999888
Q ss_pred EcCCCC
Q 013837 253 VRRPTD 258 (435)
Q Consensus 253 v~~~~~ 258 (435)
++.+.-
T Consensus 85 cnlA~l 90 (247)
T KOG0149|consen 85 CNLASL 90 (247)
T ss_pred cchhhh
Confidence 876543
No 89
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.32 E-value=1.2e-12 Score=114.64 Aligned_cols=73 Identities=29% Similarity=0.556 Sum_probs=69.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~ 374 (435)
.+|||+|||.++++.+|+.+|++||+|++|.|+++ ||||..++...|..||..|||.+|.|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999986 9999999999999999999999999999999999877
Q ss_pred C
Q 013837 375 S 375 (435)
Q Consensus 375 ~ 375 (435)
.
T Consensus 75 s 75 (346)
T KOG0109|consen 75 S 75 (346)
T ss_pred C
Confidence 3
No 90
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.31 E-value=6.4e-12 Score=109.24 Aligned_cols=79 Identities=22% Similarity=0.213 Sum_probs=67.1
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceEE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR 252 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l~ 252 (435)
...+|||+||++.+|+++|++||+.||.|.. |..+.-+..++||||+|.++++|..|+.|+|..|.+++|.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~---------V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~ 74 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEH---------VEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQRVC 74 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEE---------EEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCceEE
Confidence 3468999999999999999999999998644 2222234556899999999999999999999999999999
Q ss_pred EcCCCCCC
Q 013837 253 VRRPTDYN 260 (435)
Q Consensus 253 v~~~~~~~ 260 (435)
|.....+.
T Consensus 75 It~~~~y~ 82 (243)
T PLN03121 75 ITRWGQYE 82 (243)
T ss_pred EEeCcccc
Confidence 99876654
No 91
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=3.4e-12 Score=103.78 Aligned_cols=75 Identities=31% Similarity=0.437 Sum_probs=64.7
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec-CCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-HEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~-~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
..++|||+||+..+++.||...|..||.|. .+.+- ...|||||||+++.+|..|+ .|+|..|.|..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lr------------svWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r 76 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLR------------SVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSR 76 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcce------------eEEEeecCCCceEEeccCcccHHHHHhhcCCccccCce
Confidence 468999999999999999999999999753 33332 35699999999999999999 79999999999
Q ss_pred EEEcCCCCC
Q 013837 251 VRVRRPTDY 259 (435)
Q Consensus 251 l~v~~~~~~ 259 (435)
|.|+.++..
T Consensus 77 ~rVE~S~G~ 85 (195)
T KOG0107|consen 77 IRVELSTGR 85 (195)
T ss_pred EEEEeecCC
Confidence 999976543
No 92
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=3.7e-12 Score=109.03 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=73.8
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
.+.++|-|.||+.+++|++|+++|.+||.|..++ +.++..++.++|||||.|.+.++|.+|+ .|||+-+...-
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvy------lardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LI 260 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVY------LARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLI 260 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeE------EEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEE
Confidence 4678999999999999999999999999986644 3677778999999999999999999999 59999999999
Q ss_pred EEEcCCCCC
Q 013837 251 VRVRRPTDY 259 (435)
Q Consensus 251 l~v~~~~~~ 259 (435)
|.|+|+++.
T Consensus 261 LrvEwskP~ 269 (270)
T KOG0122|consen 261 LRVEWSKPS 269 (270)
T ss_pred EEEEecCCC
Confidence 999998753
No 93
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=1.9e-13 Score=111.47 Aligned_cols=88 Identities=27% Similarity=0.395 Sum_probs=78.9
Q ss_pred hhhcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCcee
Q 013837 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF 246 (435)
Q Consensus 168 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~ 246 (435)
.+...++.-|||+|||+..||.||.-.|++||+|+.++ .|.+..+|.++||||+.|++..+...|+ .|||..|
T Consensus 29 H~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdin------LiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki 102 (219)
T KOG0126|consen 29 HQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDIN------LIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI 102 (219)
T ss_pred hhhcccceEEEECCCcccccCCcEEEEeeccCceEEEE------EEecCCCCcccceEEEEecCccceEEEEeccCCcee
Confidence 45567888999999999999999999999999998754 4788889999999999999999999999 6999999
Q ss_pred cCceEEEcCCCCCCc
Q 013837 247 EGVAVRVRRPTDYNP 261 (435)
Q Consensus 247 ~g~~l~v~~~~~~~~ 261 (435)
.|+.|+|.....+..
T Consensus 103 ~gRtirVDHv~~Yk~ 117 (219)
T KOG0126|consen 103 LGRTIRVDHVSNYKK 117 (219)
T ss_pred cceeEEeeecccccC
Confidence 999999987766653
No 94
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.27 E-value=1.3e-10 Score=105.27 Aligned_cols=187 Identities=18% Similarity=0.190 Sum_probs=129.8
Q ss_pred cCCeEEEc--CCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceec-C
Q 013837 173 HARRVYVG--GLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE-G 248 (435)
Q Consensus 173 ~~~~l~V~--nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~-g 248 (435)
....|.+. |--+.+|-+-|..+....|+|+ ..+.+.++.=.|.|||.+.+.|++|. .|||..|. |
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVl-----------RIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsG 187 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVL-----------RIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSG 187 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceE-----------EEEEEeccceeeEEeechhHHHHHHHhhccccccccc
Confidence 33444444 4445689999999999999853 33344445668999999999999999 69998774 3
Q ss_pred -ceEEEcCCCCCCcchhhc------------CCCCCCCCC---------------ccccc--cc----------------
Q 013837 249 -VAVRVRRPTDYNPTLAAA------------LGPGQPSPN---------------LNLAA--VG---------------- 282 (435)
Q Consensus 249 -~~l~v~~~~~~~~~~~~~------------~~~~~~~~~---------------~~~~~--~~---------------- 282 (435)
++|+|+|+++..-..... .++..+..+ .++.. .+
T Consensus 188 CCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r 267 (494)
T KOG1456|consen 188 CCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSR 267 (494)
T ss_pred ceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCC
Confidence 789998876422110000 000000000 00000 00
Q ss_pred --------cccCCCCCCCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHH
Q 013837 283 --------LASGAIGGAEGPDRVFVGGLPYY-FTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 353 (435)
Q Consensus 283 --------~~~~~~~~~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al 353 (435)
.......+..+.+.+.|-+|... ++-+.|..+|-.||.|+.|++++.+ .|.|.||+.+..+.+.|+
T Consensus 268 ~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v 342 (494)
T KOG1456|consen 268 YRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAV 342 (494)
T ss_pred CccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHH
Confidence 00011122344578899999865 5778999999999999999999975 468999999999999999
Q ss_pred HHhCCceeCCeEEEEEEccCCC
Q 013837 354 AALNGLKMGDKTLTVRRATASS 375 (435)
Q Consensus 354 ~~l~g~~~~g~~l~V~~a~~~~ 375 (435)
..||+..+-|.+|.|.+++...
T Consensus 343 ~hLnn~~lfG~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 343 THLNNIPLFGGKLNVCVSKQNF 364 (494)
T ss_pred HHhccCccccceEEEeeccccc
Confidence 9999999999999999986543
No 95
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.27 E-value=7e-11 Score=114.82 Aligned_cols=197 Identities=12% Similarity=0.065 Sum_probs=140.3
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCC-CcEEEEEecCHHHHHHHHHhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE-KKFAFVEMRTVEEASNAMALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~-~g~afv~f~~~~~a~~a~~l~~~~~~g~ 249 (435)
..+.+.+-+.+++++..+.|+++||...-. ...++.++ ..+.+ .|-++|+|.....+.+|+.-|...+-.+
T Consensus 308 v~d~~y~~~~gm~fn~~~nd~rkfF~g~~~-------~~~~l~~~-~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R 379 (944)
T KOG4307|consen 308 VSDKYYNNYKGMEFNNDFNDGRKFFPGRNA-------QSTDLSEN-RVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNR 379 (944)
T ss_pred cchhheeeecccccccccchhhhhcCcccc-------cccchhhh-hcCCCcCCceEEEecCcchHHHHHhcCchhhhhc
Confidence 356678888999999999999999985411 11111222 22333 7999999999999999999999999999
Q ss_pred eEEEcCCCCCCcchhhcCCCCCCCCCcccc-------cccc-ccCCC--CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcC
Q 013837 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNLA-------AVGL-ASGAI--GGAEGPDRVFVGGLPYYFTETQIKELLESFG 319 (435)
Q Consensus 250 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~--~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G 319 (435)
.+.|..+.+.....+......++....... ..+. ..+.. ..-....+|||..||..+++.++.++|...-
T Consensus 380 ~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~ 459 (944)
T KOG4307|consen 380 PFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAA 459 (944)
T ss_pred ceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhh
Confidence 999987766544333333222221111000 0000 01111 1123356999999999999999999999988
Q ss_pred CeeE-EEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCCC
Q 013837 320 TLHG-FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSG 376 (435)
Q Consensus 320 ~v~~-v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~~ 376 (435)
.|++ |.|...+ +++..+.|||+|..++++..|+...+.+.++.+.|+|.-.....+
T Consensus 460 ~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 460 AVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred hhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence 8877 6666554 678889999999999999999988888999999999988765544
No 96
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.25 E-value=3.8e-11 Score=112.87 Aligned_cols=190 Identities=20% Similarity=0.206 Sum_probs=126.9
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceEE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR 252 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l~ 252 (435)
..-.|-+++||+.||++||.+||...-.+ ..+..+....-++..|-|||+|++.+.|++||.-+...|+.+.|.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv------~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIE 175 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIV------PDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIE 175 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCccc------ccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEE
Confidence 45679999999999999999999976211 111112333445678999999999999999999888889988888
Q ss_pred EcCCCCCCcchhh-----c---CCCCCC----CCC-------------cc----------------------cc----cc
Q 013837 253 VRRPTDYNPTLAA-----A---LGPGQP----SPN-------------LN----------------------LA----AV 281 (435)
Q Consensus 253 v~~~~~~~~~~~~-----~---~~~~~~----~~~-------------~~----------------------~~----~~ 281 (435)
|..+......... . .++... ... .. .. ..
T Consensus 176 vF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~ 255 (510)
T KOG4211|consen 176 VFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGR 255 (510)
T ss_pred eehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccc
Confidence 8654311100000 0 000000 000 00 00 00
Q ss_pred ccc------------cC-CCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHH
Q 013837 282 GLA------------SG-AIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348 (435)
Q Consensus 282 ~~~------------~~-~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~ 348 (435)
... .+ ..........+.+++||+..++.+|..+|+..-.+ .|.|-..+ +|+..|-|+|+|.+.++
T Consensus 256 ~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~-dGr~TGEAdveF~t~ed 333 (510)
T KOG4211|consen 256 DPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGP-DGRATGEADVEFATGED 333 (510)
T ss_pred ccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCC-CCccCCcceeecccchh
Confidence 000 00 00011223678999999999999999999988766 67776664 58999999999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEEc
Q 013837 349 TDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 349 A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
|..|+. .++..+..+-|.+-..
T Consensus 334 av~Ams-kd~anm~hrYVElFln 355 (510)
T KOG4211|consen 334 AVGAMG-KDGANMGHRYVELFLN 355 (510)
T ss_pred hHhhhc-cCCcccCcceeeeccc
Confidence 999998 5778888777666554
No 97
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.25 E-value=8.3e-11 Score=115.91 Aligned_cols=75 Identities=27% Similarity=0.483 Sum_probs=70.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~ 374 (435)
+||||++|+.+++|+||..+|+.||.|.+|.++.. +|+|||.+..-.+|.+|+.+|+...+.++.|+|.||..+
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 58999999999999999999999999999988764 789999999999999999999999999999999999766
Q ss_pred C
Q 013837 375 S 375 (435)
Q Consensus 375 ~ 375 (435)
.
T Consensus 496 G 496 (894)
T KOG0132|consen 496 G 496 (894)
T ss_pred C
Confidence 4
No 98
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=5.2e-11 Score=88.09 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=67.5
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC---CCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH---EKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~---~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
..+-|||.|||+.+|.++..++|..||. |..+.++. .+|.|||.|++..+|.+|+ .|+|..+.+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~------------IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ 84 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGT------------IRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDN 84 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccc------------eEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCC
Confidence 4578999999999999999999999997 66777664 5799999999999999999 699999999
Q ss_pred ceEEEcCCCCCC
Q 013837 249 VAVRVRRPTDYN 260 (435)
Q Consensus 249 ~~l~v~~~~~~~ 260 (435)
+.|.|-+.+...
T Consensus 85 ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 85 RYLVVLYYQPED 96 (124)
T ss_pred ceEEEEecCHHH
Confidence 999999876543
No 99
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.22 E-value=1.7e-11 Score=88.70 Aligned_cols=64 Identities=34% Similarity=0.623 Sum_probs=52.7
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC-----CCcEEEEEecCHHHHHHHHH-hCCceecCce
Q 013837 177 VYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH-----EKKFAFVEMRTVEEASNAMA-LDGIIFEGVA 250 (435)
Q Consensus 177 l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~-----~~g~afv~f~~~~~a~~a~~-l~~~~~~g~~ 250 (435)
|||+|||+.+++++|.++|..||.| ..+.+.. .+++|||+|.+.++|..|+. +++..|+|+.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v------------~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~ 68 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPV------------EKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRK 68 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBE------------EEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCc------------ceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEE
Confidence 7999999999999999999999863 3444333 37999999999999999995 7779999998
Q ss_pred EE
Q 013837 251 VR 252 (435)
Q Consensus 251 l~ 252 (435)
|.
T Consensus 69 l~ 70 (70)
T PF14259_consen 69 LR 70 (70)
T ss_dssp EE
T ss_pred cC
Confidence 74
No 100
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.19 E-value=6.9e-11 Score=99.07 Aligned_cols=83 Identities=31% Similarity=0.518 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhc-CCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESF-GTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~-G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
.....++|..+|..+.+..|..+|.+| |.|..+++.+++.||+++|||||+|++++.|.-|-+.||++.|.|+.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 344679999999999999999999998 6788888889999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 013837 371 ATAS 374 (435)
Q Consensus 371 a~~~ 374 (435)
-.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7554
No 101
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=5.3e-11 Score=107.00 Aligned_cols=83 Identities=19% Similarity=0.397 Sum_probs=78.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
..+.+.|||-.|.+-+|.+||.-+|+.||+|..|.|++|..||.+-.||||+|++.+++++|.-.|.+..|..+.|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 013837 371 ATA 373 (435)
Q Consensus 371 a~~ 373 (435)
+..
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 843
No 102
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=2.2e-11 Score=94.45 Aligned_cols=84 Identities=24% Similarity=0.217 Sum_probs=71.8
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
.......|||.++...+||++|.+.|..||+|..+. .-.+-.++..+|||+|+|.+.++|++|+ ++||..|.|
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNih------LNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~ 141 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIH------LNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG 141 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhccccccee------eccccccccccceeeeehHhHHHHHHHHHhccchhhhC
Confidence 344567899999999999999999999999976532 2345567778999999999999999999 699999999
Q ss_pred ceEEEcCCCCC
Q 013837 249 VAVRVRRPTDY 259 (435)
Q Consensus 249 ~~l~v~~~~~~ 259 (435)
.+|.|.|+-..
T Consensus 142 q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 142 QNVSVDWCFVK 152 (170)
T ss_pred CceeEEEEEec
Confidence 99999987544
No 103
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.15 E-value=5e-11 Score=99.46 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=67.6
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l 251 (435)
...+|.|-||.+-++.++|+.+|++||.|-..+ +-.+-.+..++|||||.|....+|+.|| .|+|.+|+|+.|
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVy------IPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVY------IPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCccccee------cccccccccccceeEEEeeecchHHHHHHhhcceeecccee
Confidence 456799999999999999999999999864322 2344556778999999999999999999 699999999999
Q ss_pred EEcCCC
Q 013837 252 RVRRPT 257 (435)
Q Consensus 252 ~v~~~~ 257 (435)
.|+.+.
T Consensus 86 rVq~ar 91 (256)
T KOG4207|consen 86 RVQMAR 91 (256)
T ss_pred eehhhh
Confidence 998764
No 104
>smart00362 RRM_2 RNA recognition motif.
Probab=99.15 E-value=2.4e-10 Score=82.62 Aligned_cols=67 Identities=37% Similarity=0.618 Sum_probs=57.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe----cCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI----NHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 176 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~----~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
+|+|+|||..+++++|.++|..||.+. .+.+ +..+|+|||+|.+.++|..|+ .+++..+.|+.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~------------~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~ 68 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIE------------SVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRP 68 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEE------------EEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEE
Confidence 589999999999999999999999753 3332 335699999999999999999 59999999999
Q ss_pred EEEc
Q 013837 251 VRVR 254 (435)
Q Consensus 251 l~v~ 254 (435)
|.|.
T Consensus 69 i~v~ 72 (72)
T smart00362 69 LRVE 72 (72)
T ss_pred EeeC
Confidence 8874
No 105
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=8.7e-11 Score=103.52 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=71.4
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
.+-+||||+-|+++++|.+|+..|..||.|..+. .|.+..++.++|||||+|++..+...|. +.+|++|+|+.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~Ikrir------lV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr 172 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIR------LVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR 172 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEE------EeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcE
Confidence 6679999999999999999999999999987643 3677788999999999999999999999 69999999999
Q ss_pred EEEcCC
Q 013837 251 VRVRRP 256 (435)
Q Consensus 251 l~v~~~ 256 (435)
|.|.+-
T Consensus 173 i~VDvE 178 (335)
T KOG0113|consen 173 ILVDVE 178 (335)
T ss_pred EEEEec
Confidence 999753
No 106
>PLN03213 repressor of silencing 3; Provisional
Probab=99.14 E-value=8.1e-11 Score=110.22 Aligned_cols=76 Identities=18% Similarity=0.371 Sum_probs=63.6
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCH--HHHHHHH-HhCCceecCc
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTV--EEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~--~~a~~a~-~l~~~~~~g~ 249 (435)
...+||||||++.+|+++|...|..||.|..+. .+. ...+|||||+|.+. .++.+|| .|||..|.|+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVE---------IpR-ETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR 78 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVE---------FVR-TKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG 78 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE---------Eec-ccCCceEEEEecCCcHHHHHHHHHHhcCCeecCc
Confidence 446899999999999999999999999965421 111 12389999999987 6899999 6999999999
Q ss_pred eEEEcCCCC
Q 013837 250 AVRVRRPTD 258 (435)
Q Consensus 250 ~l~v~~~~~ 258 (435)
.|+|..+++
T Consensus 79 ~LKVNKAKP 87 (759)
T PLN03213 79 RLRLEKAKE 87 (759)
T ss_pred eeEEeeccH
Confidence 999998764
No 107
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.14 E-value=3e-11 Score=115.94 Aligned_cols=81 Identities=27% Similarity=0.418 Sum_probs=73.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceEEE
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 253 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~v 253 (435)
+.|||||||+.+++++|.++|...|.|+.+. .+.+-.++..+||||++|.+.++|..|+ .|||.++.|++|+|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~------~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v 92 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFR------LVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRV 92 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceee------ecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEe
Confidence 8899999999999999999999999987754 3667778899999999999999999999 59999999999999
Q ss_pred cCCCCCCc
Q 013837 254 RRPTDYNP 261 (435)
Q Consensus 254 ~~~~~~~~ 261 (435)
.|+.....
T Consensus 93 ~~~~~~~~ 100 (435)
T KOG0108|consen 93 NYASNRKN 100 (435)
T ss_pred ecccccch
Confidence 99876544
No 108
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=2.9e-10 Score=98.50 Aligned_cols=80 Identities=30% Similarity=0.513 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCce-eC--CeEEEEE
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLK-MG--DKTLTVR 369 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~-~~--g~~l~V~ 369 (435)
..++|||+-|...-.|+|++.+|..||.|++|.+.+.++ |.+||+|||.|.+..+|+.||..|||.. +- ...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 346899999999999999999999999999999999875 9999999999999999999999999974 33 4789999
Q ss_pred EccC
Q 013837 370 RATA 373 (435)
Q Consensus 370 ~a~~ 373 (435)
|+..
T Consensus 97 ~ADT 100 (371)
T KOG0146|consen 97 FADT 100 (371)
T ss_pred eccc
Confidence 9954
No 109
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=1.1e-10 Score=117.06 Aligned_cols=165 Identities=19% Similarity=0.321 Sum_probs=132.1
Q ss_pred hhhcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCcee
Q 013837 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF 246 (435)
Q Consensus 168 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~ 246 (435)
.......++||++||+..+++.+|+-.|..+|.|-.+. |....++....||||.|.+.+.+-.|. ++.+..|
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VD-------iKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I 438 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVD-------IKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLI 438 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccc-------cccCCCCcccchhhhhhhccccCcccchhhcCCcc
Confidence 34456789999999999999999999999999863310 122224556689999999999999998 6888777
Q ss_pred cCceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEE
Q 013837 247 EGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326 (435)
Q Consensus 247 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i 326 (435)
..-.+++.+... .....+.++|++|+..+....|..+|..||.|..|.+
T Consensus 439 ~~g~~r~glG~~-------------------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy 487 (975)
T KOG0112|consen 439 GNGTHRIGLGQP-------------------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY 487 (975)
T ss_pred ccCccccccccc-------------------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeec
Confidence 665555554321 1244568999999999999999999999999988776
Q ss_pred eecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC--eEEEEEEccCCCC
Q 013837 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRATASSG 376 (435)
Q Consensus 327 ~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~V~~a~~~~~ 376 (435)
-.. .-||||+|++...|+.|+..|-|..|+| +.|.|.||..-..
T Consensus 488 ~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 488 RHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred ccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCC
Confidence 543 3499999999999999999999999986 7899999976543
No 110
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=6.4e-11 Score=99.62 Aligned_cols=83 Identities=22% Similarity=0.325 Sum_probs=72.3
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
..-++|||++|...+||.-|...|-+||.|..+. ...+....+.+|||||+|...++|.+|| .||+.+|.|+.
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIq------iPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Grt 81 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQ------IPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRT 81 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcc------cccchhcccccceeEEEeeccchhHHHhhcCchhhhccee
Confidence 3568999999999999999999999999976533 2455566788999999999999999999 69999999999
Q ss_pred EEEcCCCCCC
Q 013837 251 VRVRRPTDYN 260 (435)
Q Consensus 251 l~v~~~~~~~ 260 (435)
|.|.++.+..
T Consensus 82 irVN~AkP~k 91 (298)
T KOG0111|consen 82 IRVNLAKPEK 91 (298)
T ss_pred EEEeecCCcc
Confidence 9999887643
No 111
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.06 E-value=1.1e-10 Score=107.06 Aligned_cols=178 Identities=17% Similarity=0.206 Sum_probs=136.4
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCc-eecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGI-IFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~-~~~g~~ 250 (435)
...+++|++++...+.+.++..++..+|..+... ....-....++|+++|.|...+.+..|+++.+. .+.+..
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~------~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~ 159 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDAR------SSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNK 159 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccch------hhhhccccccccceeeccccHHHHHHHHHhhhcccccccc
Confidence 3577899999999999999999999998754321 122223456789999999999999999987774 555555
Q ss_pred EEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEE-EcCCCCCCCHHHHHHHHHhcCCeeEEEEeec
Q 013837 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVF-VGGLPYYFTETQIKELLESFGTLHGFDLVKD 329 (435)
Q Consensus 251 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~ 329 (435)
+.....+...... .............++| |.+|+..+++++|+.+|..+|.|..++++.+
T Consensus 160 ~~~dl~~~~~~~~-------------------~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~ 220 (285)
T KOG4210|consen 160 GEKDLNTRRGLRP-------------------KNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTD 220 (285)
T ss_pred ccCcccccccccc-------------------cchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCC
Confidence 4443332221000 0000111223344555 9999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q 013837 330 RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375 (435)
Q Consensus 330 ~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~ 375 (435)
..++.++|||||.|.....+..|+.. +...+.+.++.|.+.....
T Consensus 221 ~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 221 EESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred CCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 99999999999999999999999997 8899999999999987653
No 112
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.05 E-value=1e-09 Score=98.76 Aligned_cols=83 Identities=27% Similarity=0.444 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHG--------FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 363 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~--------v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g 363 (435)
...+.|||.|||..+|.+++.++|++||.|.. |+|..+.+ |..+|-|+|.|-..++...||+.|++..|.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 44567999999999999999999999998753 78888854 9999999999999999999999999999999
Q ss_pred eEEEEEEccCCC
Q 013837 364 KTLTVRRATASS 375 (435)
Q Consensus 364 ~~l~V~~a~~~~ 375 (435)
+.|+|+.|+...
T Consensus 211 ~~~rVerAkfq~ 222 (382)
T KOG1548|consen 211 KKLRVERAKFQM 222 (382)
T ss_pred cEEEEehhhhhh
Confidence 999999997643
No 113
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.04 E-value=5.7e-10 Score=96.24 Aligned_cols=133 Identities=23% Similarity=0.364 Sum_probs=104.6
Q ss_pred ecCCCcEEEEEecCHHHHHHHH-HhCCceecCceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCe
Q 013837 218 INHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDR 296 (435)
Q Consensus 218 ~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (435)
-+.-.+++|+.|.....-.++- +-++..+.-.+|++...+.... +. ...-....-.
T Consensus 136 p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswed------------Ps-----------l~ew~~~DfR 192 (290)
T KOG0226|consen 136 PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWED------------PS-----------LAEWDEDDFR 192 (290)
T ss_pred CCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCC------------cc-----------cccCccccce
Confidence 3445789999999877777766 4566666666666654433221 11 0011223358
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 013837 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (435)
Q Consensus 297 l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~ 373 (435)
||.+.|..+++++-|...|.+|-.....++++++-||+++||+||.|.+..++..|+..|+|..++.+.|++.-+.-
T Consensus 193 IfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 193 IFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred eecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999886643
No 114
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=4e-11 Score=100.91 Aligned_cols=137 Identities=23% Similarity=0.303 Sum_probs=111.7
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC----CCcEEEEEecCHHHHHHHHH-hCCce
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH----EKKFAFVEMRTVEEASNAMA-LDGII 245 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~----~~g~afv~f~~~~~a~~a~~-l~~~~ 245 (435)
.+..+||||+|+-..++|+-|.++|-+.|.| +.+.+.. ...||||+|.++....-|++ +||..
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV------------~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~ 73 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPV------------YKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDD 73 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCce------------EEEeCCCCccCCCceeeeecccccchhhhhhhcccch
Confidence 3467899999999999999999999999874 4444432 12499999999999999995 99999
Q ss_pred ecCceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcC----CCCCCCHHHHHHHHHhcCCe
Q 013837 246 FEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGG----LPYYFTETQIKELLESFGTL 321 (435)
Q Consensus 246 ~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~te~~l~~~F~~~G~v 321 (435)
+.+..++|++ +.++ |...++++.+...|+.-|.+
T Consensus 74 l~~~e~q~~~------------------------------------------r~G~shapld~r~~~ei~~~v~s~a~p~ 111 (267)
T KOG4454|consen 74 LEEDEEQRTL------------------------------------------RCGNSHAPLDERVTEEILYEVFSQAGPI 111 (267)
T ss_pred hccchhhccc------------------------------------------ccCCCcchhhhhcchhhheeeecccCCC
Confidence 9999988863 3344 56678999999999999999
Q ss_pred eEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC
Q 013837 322 HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG 362 (435)
Q Consensus 322 ~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~ 362 (435)
..+++..+.+ |.++.++||.+....+.-.|+....+..+.
T Consensus 112 ~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 112 EGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred CCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 9999999865 778889999998877777777766555443
No 115
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=2.5e-11 Score=121.02 Aligned_cols=151 Identities=23% Similarity=0.270 Sum_probs=125.7
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCce
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~ 250 (435)
....+++||.||+..+.+.+|...|..+|.+-.. .+++-+..+.-+|+|||+|..++.|.+|++++...+.|+
T Consensus 664 ~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~v------qi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK- 736 (881)
T KOG0128|consen 664 IRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVV------QIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGK- 736 (881)
T ss_pred HHHHHHHHHhhcchhhcCchhhhhcCccchhhhH------HHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhh-
Confidence 3566889999999999999999999999875321 112223344557999999999999999998777666652
Q ss_pred EEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecC
Q 013837 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330 (435)
Q Consensus 251 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~ 330 (435)
..|+|.|+|+..|.+.|+.+|.++|.++++.++..+
T Consensus 737 --------------------------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r 772 (881)
T KOG0128|consen 737 --------------------------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR 772 (881)
T ss_pred --------------------------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhh
Confidence 268999999999999999999999999999988775
Q ss_pred CCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 013837 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (435)
Q Consensus 331 ~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~ 373 (435)
.|+++|.|||.|.++.+|.++.....+..+.-..+.|..+++
T Consensus 773 -~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 773 -AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred -ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 599999999999999999999988888888877777877554
No 116
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.99 E-value=1.5e-10 Score=105.47 Aligned_cols=188 Identities=15% Similarity=0.049 Sum_probs=126.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceEEEcC
Q 013837 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRR 255 (435)
Q Consensus 176 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l~v~~ 255 (435)
.|.|.||.+.+|.++++.||..+|+|-.+.+... +-++.+......|||.|.+..++..|..|.+++|-++.|.|-.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~---~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPN---VDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCC---CCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 6999999999999999999999999876555432 3344445556799999999999999999999999999888864
Q ss_pred CCCCC-cch-h------hcCCCCCCCCCcc--------------cccccc-----ccCCCCCCCCCCeEEEcCCCCCCCH
Q 013837 256 PTDYN-PTL-A------AALGPGQPSPNLN--------------LAAVGL-----ASGAIGGAEGPDRVFVGGLPYYFTE 308 (435)
Q Consensus 256 ~~~~~-~~~-~------~~~~~~~~~~~~~--------------~~~~~~-----~~~~~~~~~~~~~l~V~nLp~~~te 308 (435)
.-+.. +.. + ....+.+-.+... .+.+.. +..+........+|+|.+|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 33221 111 0 0001100000000 000000 0000011112367999999999999
Q ss_pred HHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 309 TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 309 ~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
.++.++|..+|.|....+.-. ...-+|.|+|........|+. ++|+.+.-....+..-
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~ 223 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAII 223 (479)
T ss_pred hhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhc
Confidence 999999999999987766543 234578899999999999998 6888887444444333
No 117
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.99 E-value=2.8e-09 Score=77.33 Aligned_cols=68 Identities=37% Similarity=0.569 Sum_probs=58.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec-----CCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-----HEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 176 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~-----~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
+|+|+|||..+++++|.++|..||.|. .+.+. ...++|||+|.+.++|..|+ .+++..+.|+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~------------~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~ 68 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVE------------SVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGR 68 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEE------------EEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 489999999999999999999998743 33222 24799999999999999999 5999999999
Q ss_pred eEEEcC
Q 013837 250 AVRVRR 255 (435)
Q Consensus 250 ~l~v~~ 255 (435)
.|.|.+
T Consensus 69 ~~~v~~ 74 (74)
T cd00590 69 PLRVEF 74 (74)
T ss_pred EEEEeC
Confidence 998863
No 118
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.94 E-value=1.9e-09 Score=74.07 Aligned_cols=54 Identities=35% Similarity=0.552 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCCceEEEEecCCC-cEEEEEecCHHHHHHHH-HhCCceecCceEEEcCC
Q 013837 191 IATFFSQVMTAIGGNSAGPGDAVVNVYINHEK-KFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRP 256 (435)
Q Consensus 191 l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~-g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~v~~~ 256 (435)
|.++|++||. |..+.+...+ ++|||+|.+.++|..|+ .|||..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~------------V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGE------------VKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-------------EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCccc------------EEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6789999997 6666666665 99999999999999999 59999999999999863
No 119
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.94 E-value=6.5e-09 Score=99.16 Aligned_cols=84 Identities=19% Similarity=0.360 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
....+|||.+|...+-..||+.+|++||+|+..+|+.+.-+--.++|+||.+.+.++|.++|+.||...|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34568999999999999999999999999999999988666667899999999999999999999999999999999998
Q ss_pred cCCC
Q 013837 372 TASS 375 (435)
Q Consensus 372 ~~~~ 375 (435)
+.-.
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 6543
No 120
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=4.3e-09 Score=94.94 Aligned_cols=78 Identities=17% Similarity=0.377 Sum_probs=68.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHH-hCCceeCCeEEEE
Q 013837 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA-LNGLKMGDKTLTV 368 (435)
Q Consensus 290 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~-l~g~~~~g~~l~V 368 (435)
.....++|||++|-..++|.+|+++|.+||.|..|.+... +++|||+|.+.++|+.|... +|...|+|..|+|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 3345578999999889999999999999999999998875 56999999999999988764 5777889999999
Q ss_pred EEccC
Q 013837 369 RRATA 373 (435)
Q Consensus 369 ~~a~~ 373 (435)
.|..+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99987
No 121
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.93 E-value=4.7e-09 Score=95.60 Aligned_cols=180 Identities=20% Similarity=0.201 Sum_probs=122.9
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCce
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~ 250 (435)
....-.|-.++||+..++.+|-.||+..-...+ +..+.....+...|+|.|.|.+.+.-..|++-+.+.+.++.
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~g------g~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ry 130 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANG------GRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRY 130 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhcccc------ceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCc
Confidence 344556778899999999999999986633221 22233334456679999999999999999999999999999
Q ss_pred EEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhc----CCeeEEEE
Q 013837 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESF----GTLHGFDL 326 (435)
Q Consensus 251 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~v~~v~i 326 (435)
|.|-.+.....-.-...+ +.... ........-.|-+++||+++|+.||.++|.+- |.++.|-+
T Consensus 131 ievYka~ge~f~~iagg~-s~e~~------------~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLF 197 (508)
T KOG1365|consen 131 IEVYKATGEEFLKIAGGT-SNEAA------------PFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLF 197 (508)
T ss_pred eeeeccCchhheEecCCc-cccCC------------CCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEE
Confidence 999766543211100000 00000 00000112346789999999999999999743 23455655
Q ss_pred eecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 327 ~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
+..+ .|+..|-|||.|..+++|+.||. .|...|+-+.|.+-.+
T Consensus 198 V~rp-dgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 198 VTRP-DGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFRS 240 (508)
T ss_pred EECC-CCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHHH
Confidence 5554 58999999999999999999998 4666676666665544
No 122
>smart00360 RRM RNA recognition motif.
Probab=98.90 E-value=6e-09 Score=74.83 Aligned_cols=70 Identities=33% Similarity=0.511 Sum_probs=55.1
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceEEEc
Q 013837 179 VGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVR 254 (435)
Q Consensus 179 V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~v~ 254 (435)
|+|||..+++++|+++|..||.|..+.+ ......+.++|||||+|.+.++|..|+ .+++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i------~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRL------VRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEE------EeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799999999999999999997533110 000012445789999999999999999 599999999998874
No 123
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.88 E-value=1.8e-08 Score=76.16 Aligned_cols=80 Identities=23% Similarity=0.339 Sum_probs=70.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhc--CCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC----CeEEEE
Q 013837 295 DRVFVGGLPYYFTETQIKELLESF--GTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG----DKTLTV 368 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~--G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~----g~~l~V 368 (435)
+||.|+|||...|.++|.+++... |...-+.++.|..++.+.|||||.|.+++.|.+..+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999988763 56777889999888999999999999999999999999999885 688999
Q ss_pred EEccCC
Q 013837 369 RRATAS 374 (435)
Q Consensus 369 ~~a~~~ 374 (435)
.||..+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 999543
No 124
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.85 E-value=3.1e-09 Score=97.85 Aligned_cols=86 Identities=27% Similarity=0.568 Sum_probs=78.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
..++|||++|++.++++.|++.|..||.|.++.+++|+.++.++||+||+|++.+...++|. ..-+.|.|+.|.+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 45789999999999999999999999999999999999999999999999999999998887 45688999999999998
Q ss_pred CCCCCCc
Q 013837 373 ASSGQSK 379 (435)
Q Consensus 373 ~~~~~~~ 379 (435)
+...+.+
T Consensus 84 ~r~~~~~ 90 (311)
T KOG4205|consen 84 SREDQTK 90 (311)
T ss_pred Ccccccc
Confidence 8764433
No 125
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.84 E-value=1.6e-08 Score=89.44 Aligned_cols=83 Identities=24% Similarity=0.413 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
....+|+|.|||+.|+++||+++|..||.+..+.|..++ .|.+.|.|-|.|...++|.+|++.+||..++|+.|++...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 344789999999999999999999999999989888885 6999999999999999999999999999999999999998
Q ss_pred cCCC
Q 013837 372 TASS 375 (435)
Q Consensus 372 ~~~~ 375 (435)
....
T Consensus 160 ~~~~ 163 (243)
T KOG0533|consen 160 SSPS 163 (243)
T ss_pred cCcc
Confidence 6553
No 126
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.83 E-value=2.5e-08 Score=84.51 Aligned_cols=85 Identities=24% Similarity=0.337 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeec-CCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC---CeEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD-RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG---DKTL 366 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~-~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~---g~~l 366 (435)
....+||||.+||.++..-+|..+|..|-..+...|... +....++-+|||.|.+..+|.+|+++|||..|+ +.+|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 344689999999999999999999999988777666443 222345679999999999999999999999995 8999
Q ss_pred EEEEccCCC
Q 013837 367 TVRRATASS 375 (435)
Q Consensus 367 ~V~~a~~~~ 375 (435)
+|++|+...
T Consensus 111 hiElAKSNt 119 (284)
T KOG1457|consen 111 HIELAKSNT 119 (284)
T ss_pred EeeehhcCc
Confidence 999997654
No 127
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.78 E-value=1.4e-08 Score=91.75 Aligned_cols=78 Identities=24% Similarity=0.375 Sum_probs=69.7
Q ss_pred hhcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH--hCCcee
Q 013837 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA--LDGIIF 246 (435)
Q Consensus 169 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~--l~~~~~ 246 (435)
..+....+|||++|-..++|.+|++.|.+||+ |..+.+-..+++|||+|.+.+.|+.|.+ +|...|
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGe------------irsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI 290 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGE------------IRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVI 290 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCC------------eeeEEeecccccceeeehhhHHHHHHHHhhcceeee
Confidence 45567789999999999999999999999998 6666677788999999999999999993 888999
Q ss_pred cCceEEEcCCCC
Q 013837 247 EGVAVRVRRPTD 258 (435)
Q Consensus 247 ~g~~l~v~~~~~ 258 (435)
+|+.|+|.|...
T Consensus 291 ~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 291 NGFRLKIKWGRP 302 (377)
T ss_pred cceEEEEEeCCC
Confidence 999999999876
No 128
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.78 E-value=2.6e-09 Score=90.15 Aligned_cols=80 Identities=14% Similarity=0.197 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
....+|||.||-..++|+.|.++|-+.|+|..|.|..+++ ++.+ ||||.|.++....-|++.+||..+.+..|+|++-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 3346899999999999999999999999999999998865 6677 9999999999999999999999999999999885
Q ss_pred cC
Q 013837 372 TA 373 (435)
Q Consensus 372 ~~ 373 (435)
.-
T Consensus 85 ~G 86 (267)
T KOG4454|consen 85 CG 86 (267)
T ss_pred cC
Confidence 43
No 129
>smart00361 RRM_1 RNA recognition motif.
Probab=98.76 E-value=2.4e-08 Score=71.90 Aligned_cols=61 Identities=21% Similarity=0.323 Sum_probs=47.3
Q ss_pred HHHHHHHHH----HHHHhhcCCCCCCCCceEEEEe--cCCCcEEEEEecCHHHHHHHH-HhCCceecCceEEE
Q 013837 188 EQAIATFFS----QVMTAIGGNSAGPGDAVVNVYI--NHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 253 (435)
Q Consensus 188 ~~~l~~~f~----~~G~i~~~~~~~~~~~v~~~~~--~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~v 253 (435)
+++|+++|. .||.|..+. .++++..+ +.++|||||+|.+.++|..|+ .|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~-----~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKIN-----KIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEE-----EEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999999 999864411 00111122 667999999999999999999 69999999999976
No 130
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=2.3e-08 Score=95.96 Aligned_cols=178 Identities=16% Similarity=0.163 Sum_probs=115.0
Q ss_pred hhcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceec
Q 013837 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (435)
Q Consensus 169 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~ 247 (435)
......++|+|-|||..|++++|..+|..||+|.+ | ..+....|.+||+|.+..+|+.|+ +|++..+.
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~---------i--r~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~ 138 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIRE---------I--RETPNKRGIVFVEFYDVRDAERALKALNRREIA 138 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhh---------h--hcccccCceEEEEEeehHhHHHHHHHHHHHHhh
Confidence 34556789999999999999999999999999644 1 223446799999999999999999 79999999
Q ss_pred CceEEEcCCCCCCcchhhcCCCCCCCCCccccccc--cccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEE
Q 013837 248 GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVG--LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFD 325 (435)
Q Consensus 248 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~ 325 (435)
|+.|+-...... . .+.... ..-+.... .......+ .....++. .|++.....-+...|.-+|.+.. .
T Consensus 139 ~~~~k~~~~~~~----~--~~~~~~--~~~~~~~~~p~a~s~pgg-~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~ 207 (549)
T KOG4660|consen 139 GKRIKRPGGARR----A--MGLQSG--TSFLNHFGSPLANSPPGG-WPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-R 207 (549)
T ss_pred hhhhcCCCcccc----c--chhccc--chhhhhccchhhcCCCCC-CcCCccee-eeccchhhhhhhcchhccCcccc-c
Confidence 999882111100 0 000000 00000000 00001111 11222332 28888877666777777887654 2
Q ss_pred EeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 013837 326 LVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (435)
Q Consensus 326 i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~ 374 (435)
. ++.-.-.-||+|.+..++..++..+ |..+.+....++++.+.
T Consensus 208 ~-----~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~~ 250 (549)
T KOG4660|consen 208 E-----TPLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGPG 250 (549)
T ss_pred c-----ccchhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCCC
Confidence 2 2222336789999998887666644 88888888888888664
No 131
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=7.5e-09 Score=93.38 Aligned_cols=81 Identities=15% Similarity=0.335 Sum_probs=75.0
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
.+...|||..|.+-+|.++|.-+|+.||.|++|. +|.+.+++.+-.||||+|.+.+++++|. .|++..|..+.
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sce------VIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrR 310 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCE------VIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRR 310 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeee------EEecccccchhheeeeeecchhhHHHHHhhhcceeeccce
Confidence 5668899999999999999999999999999875 5888899999999999999999999999 89999999999
Q ss_pred EEEcCCCC
Q 013837 251 VRVRRPTD 258 (435)
Q Consensus 251 l~v~~~~~ 258 (435)
|+|.+++.
T Consensus 311 IHVDFSQS 318 (479)
T KOG0415|consen 311 IHVDFSQS 318 (479)
T ss_pred EEeehhhh
Confidence 99988654
No 132
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.65 E-value=5.6e-08 Score=93.08 Aligned_cols=79 Identities=23% Similarity=0.415 Sum_probs=68.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~ 374 (435)
.+|||+|||.++++.+|+++|..||.|+...|..-.-.++..+||||+|.+.++++.||++ +-..|+++.|.|+-....
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 4599999999999999999999999999988876532244448999999999999999996 688999999999987554
No 133
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.63 E-value=1e-07 Score=91.24 Aligned_cols=83 Identities=22% Similarity=0.388 Sum_probs=72.6
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
....+.|||.+|...+-..+|+++|.+||+|++. .+|.+..+...+.|+||++.+.++|.+|| .|+...|.|+
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGA------KVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGr 475 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGA------KVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGR 475 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceece------eeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcce
Confidence 3567889999999999999999999999999884 34666667777889999999999999999 5999999999
Q ss_pred eEEEcCCCCC
Q 013837 250 AVRVRRPTDY 259 (435)
Q Consensus 250 ~l~v~~~~~~ 259 (435)
.|.|..++..
T Consensus 476 mISVEkaKNE 485 (940)
T KOG4661|consen 476 MISVEKAKNE 485 (940)
T ss_pred eeeeeecccC
Confidence 9999977643
No 134
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.63 E-value=4.2e-08 Score=87.16 Aligned_cols=82 Identities=22% Similarity=0.397 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
.....+||+|+.+.+|.++|...|+.||.|..+.|+.++.+|.++|||||+|.+.+.++.|+. |+|..|.|..|.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 345689999999999999999999999999999999999888999999999999999999999 9999999999999997
Q ss_pred cCC
Q 013837 372 TAS 374 (435)
Q Consensus 372 ~~~ 374 (435)
...
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 543
No 135
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.58 E-value=4.4e-08 Score=82.42 Aligned_cols=78 Identities=22% Similarity=0.200 Sum_probs=63.6
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHH-hhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMT-AIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~-i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
..--++|..+|..+.+.+|..+|.+||. ++.+. .-.+..+|.++|||||+|.+.+.|..|- .||++.|.++-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~r------lsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~l 121 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFR------LSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHL 121 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEE------eecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhe
Confidence 3456999999999999999999999953 22110 0134467899999999999999999999 59999999999
Q ss_pred EEEcCC
Q 013837 251 VRVRRP 256 (435)
Q Consensus 251 l~v~~~ 256 (435)
|.+.+.
T Consensus 122 L~c~vm 127 (214)
T KOG4208|consen 122 LECHVM 127 (214)
T ss_pred eeeEEe
Confidence 998864
No 136
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.52 E-value=9.3e-08 Score=82.72 Aligned_cols=71 Identities=30% Similarity=0.637 Sum_probs=65.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~ 373 (435)
..|||++||+.+.+.+|..+|..||.|..|.+.. ||+||+|.+..+|..|+..|||..|+|-.+.|+|+..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 3689999999999999999999999998887643 5899999999999999999999999999999999984
No 137
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.52 E-value=8.2e-08 Score=92.21 Aligned_cols=71 Identities=18% Similarity=0.294 Sum_probs=64.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (435)
....+|+|-|||..+++++|..+|+.||.|..|..-. ...|.+||+|.++-+|++|+++|++..|.|+.|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4567899999999999999999999999998866533 3578999999999999999999999999999998
No 138
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.48 E-value=1.2e-08 Score=94.13 Aligned_cols=150 Identities=19% Similarity=0.313 Sum_probs=118.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH-hCCc-eecCceEE
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGI-IFEGVAVR 252 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~-l~~~-~~~g~~l~ 252 (435)
..+|++||.+.++..+|..+|...-. -..-.+-...|||||.+.+...|.+|++ ++|. .+.|+.+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~------------~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e 69 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKI------------PGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQE 69 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccC------------CCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceee
Confidence 36899999999999999999986611 1111111235899999999999999994 7774 68899999
Q ss_pred EcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEe-ecCC
Q 013837 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLV-KDRD 331 (435)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~-~~~~ 331 (435)
|....... ...+.+-|+|+|...-++.|-.++..||.|+.|... .+.+
T Consensus 70 ~~~sv~kk-------------------------------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e 118 (584)
T KOG2193|consen 70 VEHSVPKK-------------------------------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE 118 (584)
T ss_pred ccchhhHH-------------------------------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH
Confidence 87654322 223468999999999999999999999999888653 3333
Q ss_pred CCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 332 TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 332 tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
| -..-|+|.+.+.+..||..|+|..+....++|.|-
T Consensus 119 t----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 119 T----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred H----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 2 12347889999999999999999999999999996
No 139
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.46 E-value=1.7e-07 Score=85.52 Aligned_cols=84 Identities=23% Similarity=0.385 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCee--------EEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLH--------GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 363 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~--------~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g 363 (435)
....+|||-+||..+++++|.++|.++|.|. .|.|.++++|+.+||-|.|.|++...|+.||.-+++..|.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 4456899999999999999999999999874 37888999999999999999999999999999999999999
Q ss_pred eEEEEEEccCCC
Q 013837 364 KTLTVRRATASS 375 (435)
Q Consensus 364 ~~l~V~~a~~~~ 375 (435)
.+|+|.+|....
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999999997665
No 140
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.41 E-value=5.3e-07 Score=88.72 Aligned_cols=84 Identities=18% Similarity=0.304 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC---CCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD---TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~---tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (435)
...+++|||+||++.++++.|...|..||+|..|+|+.... ....+-++||-|.+-.+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45567899999999999999999999999999999987642 233556899999999999999999999999999999
Q ss_pred EEEccCC
Q 013837 368 VRRATAS 374 (435)
Q Consensus 368 V~~a~~~ 374 (435)
+.|++.-
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9998543
No 141
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.33 E-value=4.2e-06 Score=74.27 Aligned_cols=84 Identities=15% Similarity=0.182 Sum_probs=66.1
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
.+....+|+|.|||+.++++||+++|..||.+... .+-....+.+.|.|-|.|...++|..|+ .+++..+.|
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~-------~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG 151 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRV-------AVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDG 151 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEE-------eeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCC
Confidence 34455789999999999999999999999854210 1122234567799999999999999999 699999999
Q ss_pred ceEEEcCCCCCC
Q 013837 249 VAVRVRRPTDYN 260 (435)
Q Consensus 249 ~~l~v~~~~~~~ 260 (435)
++|++.......
T Consensus 152 ~~mk~~~i~~~~ 163 (243)
T KOG0533|consen 152 RPMKIEIISSPS 163 (243)
T ss_pred ceeeeEEecCcc
Confidence 999987655443
No 142
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.31 E-value=1.1e-06 Score=84.32 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=63.9
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe--cCCCcEEEEEecCHHHHHHHHHhCCceecCc
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI--NHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~--~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~ 249 (435)
....+|||+|||.++++.+|.++|..||.|... -+.+.. +....||||+|.+..++..|++.+...++++
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~--------~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~ 357 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEG--------GIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGR 357 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhccccccc--------ceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCe
Confidence 444569999999999999999999999998653 333433 3334899999999999999998889999999
Q ss_pred eEEEcCC
Q 013837 250 AVRVRRP 256 (435)
Q Consensus 250 ~l~v~~~ 256 (435)
+|.|+--
T Consensus 358 kl~Veek 364 (419)
T KOG0116|consen 358 KLNVEEK 364 (419)
T ss_pred eEEEEec
Confidence 9999743
No 143
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.22 E-value=4.2e-06 Score=63.37 Aligned_cols=79 Identities=11% Similarity=0.167 Sum_probs=59.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceec----Cc
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE----GV 249 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~----g~ 249 (435)
.||+|+|||...|.++|.+++..... +... -.=..++.....+.|||||.|.+++.|.... .++|..|. .+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~--g~yD--F~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~K 77 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFK--GKYD--FFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKK 77 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhcc--Ccce--EEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCc
Confidence 48999999999999999999987632 1100 0001345556678999999999999999999 69999886 35
Q ss_pred eEEEcCCC
Q 013837 250 AVRVRRPT 257 (435)
Q Consensus 250 ~l~v~~~~ 257 (435)
...|.+|.
T Consensus 78 vc~i~yAr 85 (97)
T PF04059_consen 78 VCEISYAR 85 (97)
T ss_pred EEEEehhH
Confidence 56776664
No 144
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.19 E-value=7.8e-06 Score=58.76 Aligned_cols=69 Identities=13% Similarity=0.252 Sum_probs=47.6
Q ss_pred eEEEcCCCCCCCHHH----HHHHHHhcCC-eeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 296 RVFVGGLPYYFTETQ----IKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 296 ~l~V~nLp~~~te~~----l~~~F~~~G~-v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
.|+|.|||.+.+... |+.++..+|. |..| . .|.|+|.|.+.+.|..|.+.|+|..+.|..|.|.|
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 599999999988755 5567777875 5443 1 35799999999999999999999999999999999
Q ss_pred ccCC
Q 013837 371 ATAS 374 (435)
Q Consensus 371 a~~~ 374 (435)
....
T Consensus 74 ~~~~ 77 (90)
T PF11608_consen 74 SPKN 77 (90)
T ss_dssp S--S
T ss_pred cCCc
Confidence 8443
No 145
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.14 E-value=1.4e-06 Score=77.61 Aligned_cols=83 Identities=27% Similarity=0.295 Sum_probs=70.4
Q ss_pred hhcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecC
Q 013837 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG 248 (435)
Q Consensus 169 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g 248 (435)
+.......+||+|+.+.+|.++|...|+.||.|... .+..+...+..+|||||+|.+.+.+..|+.|++..|.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~------ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~ 169 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRV------TVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPG 169 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccce------eeeccccCCCcceeEEEecccHhhhHHHhhcCCccccc
Confidence 456778899999999999999999999999986431 22444455678999999999999999999999999999
Q ss_pred ceEEEcCCC
Q 013837 249 VAVRVRRPT 257 (435)
Q Consensus 249 ~~l~v~~~~ 257 (435)
..+.|.+..
T Consensus 170 ~~i~vt~~r 178 (231)
T KOG4209|consen 170 PAIEVTLKR 178 (231)
T ss_pred ccceeeeee
Confidence 999998654
No 146
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.06 E-value=7.3e-06 Score=80.93 Aligned_cols=85 Identities=20% Similarity=0.286 Sum_probs=66.9
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
......|||+||++.++++.|...|..||.|.+..++.+ -....-...+.|+||.|.+..+|..|+ .|+|..+.+.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwp---RtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWP---RTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecc---cchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 445678999999999999999999999998755332211 011111234689999999999999999 6999999999
Q ss_pred eEEEcCCCC
Q 013837 250 AVRVRRPTD 258 (435)
Q Consensus 250 ~l~v~~~~~ 258 (435)
.+++.|.+.
T Consensus 248 e~K~gWgk~ 256 (877)
T KOG0151|consen 248 EMKLGWGKA 256 (877)
T ss_pred eeeeccccc
Confidence 999999854
No 147
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.05 E-value=1.4e-05 Score=78.75 Aligned_cols=77 Identities=17% Similarity=0.311 Sum_probs=67.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
++.|-+.|+|+.++.+||.++|..|-.+-.-.+++..+.|...|.|.|-|++.++|..|...|++..|..++|.|..
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 34788999999999999999999998764433444446799999999999999999999999999999999998864
No 148
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.02 E-value=4.8e-06 Score=75.39 Aligned_cols=79 Identities=24% Similarity=0.380 Sum_probs=69.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCC--eeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFGT--LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G~--v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
-|+||+||-+.+|++||.+.+...|. |.+++++.+..+|.+||||+|...+.....+.++.|-...|.|..-.|.-.+
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 47999999999999999999988775 7778888888899999999999999999999999999999999877776654
Q ss_pred C
Q 013837 373 A 373 (435)
Q Consensus 373 ~ 373 (435)
+
T Consensus 161 K 161 (498)
T KOG4849|consen 161 K 161 (498)
T ss_pred h
Confidence 3
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.02 E-value=8.7e-06 Score=63.22 Aligned_cols=71 Identities=23% Similarity=0.315 Sum_probs=44.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhC-----CceeCCeEEEEE
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN-----GLKMGDKTLTVR 369 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~-----g~~~~g~~l~V~ 369 (435)
+.|+|.+++..++.++|+++|+.||.|..|.+...- ..|||.|.+.+.|+.|+..+. +..+.+..+++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 468899999999999999999999999988887652 268999999999999998763 446677777666
Q ss_pred Ec
Q 013837 370 RA 371 (435)
Q Consensus 370 ~a 371 (435)
.-
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 53
No 150
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.99 E-value=8.5e-06 Score=70.90 Aligned_cols=78 Identities=18% Similarity=0.348 Sum_probs=69.1
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
...-+||.+.|...++.+-|-..|.+|=.... ..+|.+..+++++||+||.|.+..++..|| +|+|..++.++
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~------akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrp 261 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQK------AKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRP 261 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhh------ccccccccccccccceeeeecCHHHHHHHHHhhcccccccch
Confidence 45578999999999999999999999865444 346889999999999999999999999999 79999999999
Q ss_pred EEEcC
Q 013837 251 VRVRR 255 (435)
Q Consensus 251 l~v~~ 255 (435)
|++..
T Consensus 262 iklRk 266 (290)
T KOG0226|consen 262 IKLRK 266 (290)
T ss_pred hHhhh
Confidence 99864
No 151
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=97.97 E-value=6.7e-05 Score=61.39 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=13.5
Q ss_pred CCCccCCCCccCCCCC
Q 013837 111 RSGFDMAPPAAAMLPG 126 (435)
Q Consensus 111 ~~~~~~~p~~~~~~~~ 126 (435)
...|++++++|+.+..
T Consensus 116 ~~yv~VPp~gf~~~y~ 131 (182)
T PF06495_consen 116 TKYVDVPPPGFEYAYG 131 (182)
T ss_pred eeeccCCCcccccccC
Confidence 5689999999988765
No 152
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.96 E-value=2.4e-05 Score=69.34 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=60.5
Q ss_pred CeEEEcCC--CCCCC---HHHHHHHHHhcCCeeEEEEeecCCCCCc-ceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 013837 295 DRVFVGGL--PYYFT---ETQIKELLESFGTLHGFDLVKDRDTGNS-KGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (435)
Q Consensus 295 ~~l~V~nL--p~~~t---e~~l~~~F~~~G~v~~v~i~~~~~tg~~-~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V 368 (435)
+.|+++|+ +..+. ++++.+.|++||.|..|.|...+..-.. .--.||+|+..++|.+|+-.|||..|+|+.+..
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 34666666 23343 4678999999999999988876431111 113799999999999999999999999999999
Q ss_pred EEccC
Q 013837 369 RRATA 373 (435)
Q Consensus 369 ~~a~~ 373 (435)
.|-+.
T Consensus 362 ~Fyn~ 366 (378)
T KOG1996|consen 362 CFYNL 366 (378)
T ss_pred eeccH
Confidence 98643
No 153
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.95 E-value=7.3e-05 Score=53.85 Aligned_cols=71 Identities=23% Similarity=0.268 Sum_probs=46.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceEEEc
Q 013837 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVR 254 (435)
Q Consensus 176 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~v~ 254 (435)
.|+|.|||.+.+...|+.-+.+.-+=.+ ..|+.+ ..+.|+|.|.+.+.|..|. .|+|..+.|..|.|.
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCG-------GkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCG-------GKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT---------EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccC-------CEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 5999999999988776665554433221 236655 3589999999999999999 599999999999999
Q ss_pred CCC
Q 013837 255 RPT 257 (435)
Q Consensus 255 ~~~ 257 (435)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 863
No 154
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=4.2e-05 Score=73.84 Aligned_cols=77 Identities=25% Similarity=0.355 Sum_probs=64.0
Q ss_pred CCeEEEcCCCCCCCH------HHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC-CeEE
Q 013837 294 PDRVFVGGLPYYFTE------TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG-DKTL 366 (435)
Q Consensus 294 ~~~l~V~nLp~~~te------~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~-g~~l 366 (435)
..+|+|.|+|.--.. .-|..+|+++|+|..+.++.+.++| ++||+|++|.+..+|..|++.|||+.|. +++.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 458999999854221 3466889999999999999887654 8999999999999999999999999986 6777
Q ss_pred EEEEc
Q 013837 367 TVRRA 371 (435)
Q Consensus 367 ~V~~a 371 (435)
.|..-
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 77654
No 155
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.82 E-value=5.8e-07 Score=90.46 Aligned_cols=165 Identities=13% Similarity=0.085 Sum_probs=115.4
Q ss_pred ccCCeEEEcCCCCCCCHH-HHHHHHHHHHHhhcCCCCCCCCceEEEEecCC-CcEEEEEecCHHHHHHHHHhCCceecCc
Q 013837 172 RHARRVYVGGLPPLANEQ-AIATFFSQVMTAIGGNSAGPGDAVVNVYINHE-KKFAFVEMRTVEEASNAMALDGIIFEGV 249 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~-~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~-~g~afv~f~~~~~a~~a~~l~~~~~~g~ 249 (435)
-....+.+.++.+..... .....|..+|.+..++.. .-..... ..++++.+.....++.|....+..+.++
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p-------~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~ 641 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGP-------KRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANR 641 (881)
T ss_pred hhhhhhcccCCCcchhhHHhhHHHhhcccccccccCc-------cccccccccchhhhhhccccchhhcccccccccCCc
Confidence 345567788887776554 677888888875432210 0011112 2388999999999999998888888888
Q ss_pred eEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeec
Q 013837 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD 329 (435)
Q Consensus 250 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~ 329 (435)
.+.|..+........... .........++||.||+..+.+++|...|..+|.+..+.|...
T Consensus 642 ~~av~~ad~~~~~~~~kv-------------------s~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h 702 (881)
T KOG0128|consen 642 SAAVGLADAEEKEENFKV-------------------SPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIH 702 (881)
T ss_pred cccCCCCCchhhhhccCc-------------------CchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHH
Confidence 887775543321110000 0001112347899999999999999999999999988887766
Q ss_pred CCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC
Q 013837 330 RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG 362 (435)
Q Consensus 330 ~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~ 362 (435)
..++..+|+|||+|...++|.+|+....+..++
T Consensus 703 ~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 703 KNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred hhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 677899999999999999999998855444443
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.72 E-value=7.4e-05 Score=67.58 Aligned_cols=81 Identities=16% Similarity=0.293 Sum_probs=63.0
Q ss_pred CCeEEEcCCCCCCCHHH----H--HHHHHhcCCeeEEEEeecCCCCC-cceE--EEEEEcCHHHHHHHHHHhCCceeCCe
Q 013837 294 PDRVFVGGLPYYFTETQ----I--KELLESFGTLHGFDLVKDRDTGN-SKGY--GFCVYQDPAVTDIACAALNGLKMGDK 364 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~----l--~~~F~~~G~v~~v~i~~~~~tg~-~~G~--afV~f~~~~~A~~Al~~l~g~~~~g~ 364 (435)
.+-+||-+||+.+-.|+ | .++|.+||.|..|.|-+...... .-+. .||.|.+.++|..||.+.+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35689999998876665 2 37899999998887765431111 1122 49999999999999999999999999
Q ss_pred EEEEEEccCC
Q 013837 365 TLTVRRATAS 374 (435)
Q Consensus 365 ~l~V~~a~~~ 374 (435)
.|+..|.+.+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999997654
No 157
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.71 E-value=3.6e-05 Score=70.64 Aligned_cols=89 Identities=20% Similarity=0.182 Sum_probs=72.5
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCC--CCCceEEEEecCCCcEEEEEecCHHHHHHHHH-hCCceec
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAG--PGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFE 247 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~--~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~-l~~~~~~ 247 (435)
....-+|||.+||..+++++|.++|.++|.|....... -..+-.+..+...|+-|.|.|.+...|+.|+. +++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34566899999999999999999999999886544432 12233455677889999999999999999995 9999999
Q ss_pred CceEEEcCCCCC
Q 013837 248 GVAVRVRRPTDY 259 (435)
Q Consensus 248 g~~l~v~~~~~~ 259 (435)
+.+|+|..+...
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999999876543
No 158
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.69 E-value=1.9e-05 Score=69.11 Aligned_cols=64 Identities=11% Similarity=0.227 Sum_probs=53.9
Q ss_pred HHHHHHHH-hcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 013837 309 TQIKELLE-SFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (435)
Q Consensus 309 ~~l~~~F~-~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~ 373 (435)
++|..+|+ +||.|+.+.|-.+-. -...|-+||+|..+++|++|++.|||.+|.|++|...++..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 66777777 899999887665421 23578899999999999999999999999999999999854
No 159
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.66 E-value=0.00025 Score=54.13 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=51.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEE-EeecC------CCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCe-E
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFD-LVKDR------DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK-T 365 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~-i~~~~------~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~-~ 365 (435)
...|.|-+.|.. ....|.+.|++||.|++.. +..+. ..........|+|.+..+|.+||. .||..|+|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 357899999988 5667889999999997764 10100 000123478999999999999999 699999875 5
Q ss_pred EEEEEcc
Q 013837 366 LTVRRAT 372 (435)
Q Consensus 366 l~V~~a~ 372 (435)
+-|.+++
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 6688874
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.64 E-value=0.00014 Score=48.68 Aligned_cols=52 Identities=17% Similarity=0.315 Sum_probs=42.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHH
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 353 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al 353 (435)
+.|.|.+.+.... ++|...|..||.|+.+.+... .-++||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 5788999987755 456668999999999887632 338999999999999985
No 161
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.62 E-value=6.5e-05 Score=70.01 Aligned_cols=102 Identities=20% Similarity=0.281 Sum_probs=74.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCe-eEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCc-eeCCeEEEEEEcc
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFGTL-HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL-KMGDKTLTVRRAT 372 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G~v-~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~-~~~g~~l~V~~a~ 372 (435)
..||++||.+.++..||..+|...-.- ..-.+++ .|||||.+.+...|.+|++.++|. .+.|+.+.|.++.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 468999999999999999999865221 1112232 479999999999999999999987 6789999999997
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhhcc
Q 013837 373 ASSGQSKTEQESILAQAQQHIAIQKMALQTS 403 (435)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (435)
++..+....+-.....+++...+..|..+++
T Consensus 75 ~kkqrsrk~Qirnippql~wevld~Ll~qyg 105 (584)
T KOG2193|consen 75 PKKQRSRKIQIRNIPPQLQWEVLDSLLAQYG 105 (584)
T ss_pred hHHHHhhhhhHhcCCHHHHHHHHHHHHhccC
Confidence 7654444333333344445555566665554
No 162
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.48 E-value=0.00024 Score=62.22 Aligned_cols=101 Identities=21% Similarity=0.252 Sum_probs=82.1
Q ss_pred HHHHHH-HhCCceecCceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHH
Q 013837 234 EASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIK 312 (435)
Q Consensus 234 ~a~~a~-~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~ 312 (435)
-|..|. +|++....|+.+.|.|+.. ..|+|.||...+..+.|.
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~------------------------------------a~l~V~nl~~~~sndll~ 49 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH------------------------------------AELYVVNLMQGASNDLLE 49 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc------------------------------------ceEEEEecchhhhhHHHH
Confidence 455666 6999999999999998653 369999999999999999
Q ss_pred HHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhC--C--ceeCCeEEEEEEc
Q 013837 313 ELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN--G--LKMGDKTLTVRRA 371 (435)
Q Consensus 313 ~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~--g--~~~~g~~l~V~~a 371 (435)
..|..||.|....++.| +.++..+-++|+|...-.|.+|+..++ | ....+..+.|...
T Consensus 50 ~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 50 QAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred HhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 99999999988777776 357888899999999999999998773 2 2345666666554
No 163
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.41 E-value=0.00015 Score=67.85 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=61.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeec---CCCC--Cc--------ceEEEEEEcCHHHHHHHHHHhCC
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD---RDTG--NS--------KGYGFCVYQDPAVTDIACAALNG 358 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~---~~tg--~~--------~G~afV~f~~~~~A~~Al~~l~g 358 (435)
.+.++|.+.|||.+-.-+-|.++|..+|.|..|+|.+. ++.+ .+ +-+|||+|+..+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 46789999999999888999999999999999999887 3322 22 34699999999999999998765
Q ss_pred ceeCCeEEEEEE
Q 013837 359 LKMGDKTLTVRR 370 (435)
Q Consensus 359 ~~~~g~~l~V~~ 370 (435)
..-+-.-|+|.+
T Consensus 309 e~~wr~glkvkL 320 (484)
T KOG1855|consen 309 EQNWRMGLKVKL 320 (484)
T ss_pred hhhhhhcchhhh
Confidence 544333333333
No 164
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.40 E-value=0.00044 Score=46.32 Aligned_cols=52 Identities=19% Similarity=0.527 Sum_probs=43.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM 239 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~ 239 (435)
+.|-|.|.+....+. |..+|..||+ |.++.......++||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGe------------I~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGE------------IVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCC------------EEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 568899999877654 5568999998 666777777889999999999999986
No 165
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.34 E-value=0.00048 Score=53.48 Aligned_cols=68 Identities=22% Similarity=0.254 Sum_probs=42.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH---hC---CceecC
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA---LD---GIIFEG 248 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~---l~---~~~~~g 248 (435)
+.|+|.+++..++-++|++.|..||. |..|.+......|||.|.+.+.|..|++ .. +..+.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~------------V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~ 69 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGE------------VAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKG 69 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--------------EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTS
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCC------------cceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcC
Confidence 56899999999999999999999986 6777777778899999999999999993 33 345566
Q ss_pred ceEEEc
Q 013837 249 VAVRVR 254 (435)
Q Consensus 249 ~~l~v~ 254 (435)
..+.+.
T Consensus 70 ~~~~~~ 75 (105)
T PF08777_consen 70 KEVTLE 75 (105)
T ss_dssp SSEEEE
T ss_pred ceEEEE
Confidence 555554
No 166
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.31 E-value=0.00091 Score=51.09 Aligned_cols=83 Identities=19% Similarity=0.233 Sum_probs=51.9
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCC-CCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNS-AGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~-~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l 251 (435)
....|.|-+.|+. ....|.+.|+.||.|+.... ......+.............|+|.++.+|.+||..||..|.|.-|
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 4567999999998 55778999999998643100 000000000024456789999999999999999999999988644
Q ss_pred -EEcCC
Q 013837 252 -RVRRP 256 (435)
Q Consensus 252 -~v~~~ 256 (435)
-|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 45544
No 167
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.15 E-value=0.0018 Score=52.50 Aligned_cols=57 Identities=19% Similarity=0.361 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 013837 309 TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (435)
Q Consensus 309 ~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~ 374 (435)
.+|.+.|..||.|.-|++.-+ .-+|.|.+-+.|.+|+. |+|.+++|+.|+|.+.++.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 367788999999877776654 46899999999999999 8999999999999998655
No 168
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.10 E-value=0.00039 Score=67.77 Aligned_cols=76 Identities=25% Similarity=0.287 Sum_probs=62.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHh-cCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCcee---CCeEEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLES-FGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM---GDKTLT 367 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~---~g~~l~ 367 (435)
...+.|+|.||--..|.-.|+.++.. .|.|+..+| |+ -+..|||.|.+.++|.+.+.+|||..+ +++.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 44578999999999999999999995 555766633 32 245799999999999999999999977 689999
Q ss_pred EEEccC
Q 013837 368 VRRATA 373 (435)
Q Consensus 368 V~~a~~ 373 (435)
|.|+..
T Consensus 516 adf~~~ 521 (718)
T KOG2416|consen 516 ADFVRA 521 (718)
T ss_pred eeecch
Confidence 999843
No 169
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.08 E-value=0.00041 Score=60.79 Aligned_cols=73 Identities=21% Similarity=0.427 Sum_probs=61.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC--------CCcce----EEEEEEcCHHHHHHHHHHhCCce
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT--------GNSKG----YGFCVYQDPAVTDIACAALNGLK 360 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~t--------g~~~G----~afV~f~~~~~A~~Al~~l~g~~ 360 (435)
....||+++||+......|+++|+.||.|=.|.|.....+ |...+ -|+|+|.+...|..+...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3457999999999999999999999999998888776444 22222 36799999999999999999999
Q ss_pred eCCeE
Q 013837 361 MGDKT 365 (435)
Q Consensus 361 ~~g~~ 365 (435)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 170
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.93 E-value=0.0042 Score=44.92 Aligned_cols=54 Identities=15% Similarity=0.345 Sum_probs=41.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhC
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN 357 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~ 357 (435)
...+|. +|..+...||.++|+.||.| .|..+-+. -|||.+.+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 345555 99999999999999999997 46666652 69999999999999998774
No 171
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.87 E-value=0.0014 Score=59.61 Aligned_cols=75 Identities=25% Similarity=0.423 Sum_probs=57.2
Q ss_pred CeEEEcCCCCCCCHHH------HHHHHHHHHHhhcCCCCCCCCceEEEEec---CCCcEE--EEEecCHHHHHHHH-HhC
Q 013837 175 RRVYVGGLPPLANEQA------IATFFSQVMTAIGGNSAGPGDAVVNVYIN---HEKKFA--FVEMRTVEEASNAM-ALD 242 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~------l~~~f~~~G~i~~~~~~~~~~~v~~~~~~---~~~g~a--fv~f~~~~~a~~a~-~l~ 242 (435)
.-+||-+||+.+..++ -.++|.+||+|.. ++++.++. ...+.+ ||+|.+.++|..|+ +.+
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~K--------IvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vD 186 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKK--------IVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVD 186 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeE--------EEecccccccccccccceEEEEecchHHHHHHHHHhc
Confidence 3589999999876655 2479999999754 24444442 112334 99999999999999 699
Q ss_pred CceecCceEEEcCCC
Q 013837 243 GIIFEGVAVRVRRPT 257 (435)
Q Consensus 243 ~~~~~g~~l~v~~~~ 257 (435)
|..++|+-|+..|..
T Consensus 187 gs~~DGr~lkatYGT 201 (480)
T COG5175 187 GSLLDGRVLKATYGT 201 (480)
T ss_pred cccccCceEeeecCc
Confidence 999999999998754
No 172
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.84 E-value=0.0053 Score=58.60 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=64.8
Q ss_pred hcccCCeEEEcCCCCCC-CHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecC
Q 013837 170 ATRHARRVYVGGLPPLA-NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG 248 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~-t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g 248 (435)
.....+.|-+.-.|+.. |-++|...|.+||. |.++.+..+.-.|.|+|.+..+|-.|....+..|++
T Consensus 368 ~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~------------i~n~qv~~~~~~a~vTF~t~aeag~a~~s~~avlnn 435 (526)
T KOG2135|consen 368 AVVDHSPLALEKSPFGLNTIADLNPHFAQFGE------------IENIQVDYSSLHAVVTFKTRAEAGEAYASHGAVLNN 435 (526)
T ss_pred hhcccchhhhhccCCCCchHhhhhhhhhhcCc------------cccccccCchhhheeeeeccccccchhccccceecC
Confidence 34566778888888876 67999999999998 556666666778999999999998888899999999
Q ss_pred ceEEEcCCCC
Q 013837 249 VAVRVRRPTD 258 (435)
Q Consensus 249 ~~l~v~~~~~ 258 (435)
+.|+|.|.++
T Consensus 436 r~iKl~whnp 445 (526)
T KOG2135|consen 436 RFIKLFWHNP 445 (526)
T ss_pred ceeEEEEecC
Confidence 9999999765
No 173
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.81 E-value=0.0065 Score=58.02 Aligned_cols=71 Identities=13% Similarity=0.201 Sum_probs=57.1
Q ss_pred EEEcCCCCCC-CHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 013837 297 VFVGGLPYYF-TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (435)
Q Consensus 297 l~V~nLp~~~-te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~ 374 (435)
|-+.-.|... |-++|...|.+||.|..|.|-...+ -|.|.|.+..+|-.|.. .++..|+++.|+|.|-++.
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 4444455443 6689999999999999988755422 58999999999977776 6999999999999998873
No 174
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.78 E-value=0.00022 Score=72.82 Aligned_cols=80 Identities=19% Similarity=0.298 Sum_probs=67.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
..+.+||++||+..+++.+|+..|..||.|..|.|...+. +.---||||.|.+...+..|...+.+..|....+++.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 3457899999999999999999999999999999877643 333348999999999999999999999887667777776
Q ss_pred c
Q 013837 372 T 372 (435)
Q Consensus 372 ~ 372 (435)
.
T Consensus 449 ~ 449 (975)
T KOG0112|consen 449 Q 449 (975)
T ss_pred c
Confidence 4
No 175
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.68 E-value=0.018 Score=56.08 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=53.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHh--cCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCC--ceeCCeEEEEE
Q 013837 294 PDRVFVGGLPYYFTETQIKELLES--FGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG--LKMGDKTLTVR 369 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~--~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g--~~~~g~~l~V~ 369 (435)
.|.|+|+-||..+-+|+|+.+|+. +-++.+|.+..+. -=||.|++..+|++|.+.|.- ..|.|+.|...
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 356789999999999999999985 6667777776542 148999999999999987742 35666666544
Q ss_pred E
Q 013837 370 R 370 (435)
Q Consensus 370 ~ 370 (435)
.
T Consensus 248 I 248 (684)
T KOG2591|consen 248 I 248 (684)
T ss_pred h
Confidence 3
No 176
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.64 E-value=0.0011 Score=62.30 Aligned_cols=72 Identities=24% Similarity=0.206 Sum_probs=57.4
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCC-------CcEEEEEecCHHHHHHHHHhC
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE-------KKFAFVEMRTVEEASNAMALD 242 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~-------~g~afv~f~~~~~a~~a~~l~ 242 (435)
+-.+++|.+.|||.+-..+.|.++|..+|.|..+-++.|+.+-.++.-... +-+|+|+|...+.|.+|.++.
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 357899999999999888999999999999877666666544444433222 579999999999999999744
No 177
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.39 E-value=0.025 Score=38.83 Aligned_cols=54 Identities=22% Similarity=0.408 Sum_probs=44.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhc----CCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHh
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESF----GTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~----G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l 356 (435)
...|+|+|+. +++.+||+.+|..| + ...|.++-|. -|=|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4579999996 47888999999999 5 4578888874 4779999999999999865
No 178
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.28 E-value=0.0025 Score=62.35 Aligned_cols=75 Identities=13% Similarity=0.165 Sum_probs=61.6
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCcee---c
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF---E 247 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~---~ 247 (435)
..+..|+|.||-.-+|.-+|+.++..-|.+ |....+.+-+..|||.|.+.++|.+.. +|+|..| +
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~-----------Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sN 510 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGN-----------VEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSN 510 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCc-----------hHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCC
Confidence 567889999999999999999999966543 334455666789999999999999999 6999988 4
Q ss_pred CceEEEcCCC
Q 013837 248 GVAVRVRRPT 257 (435)
Q Consensus 248 g~~l~v~~~~ 257 (435)
++.|.+.|..
T Consensus 511 PK~L~adf~~ 520 (718)
T KOG2416|consen 511 PKHLIADFVR 520 (718)
T ss_pred CceeEeeecc
Confidence 5778887754
No 179
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.98 E-value=0.0044 Score=54.50 Aligned_cols=78 Identities=15% Similarity=0.117 Sum_probs=52.5
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEE--EEecCCC----cEEEEEecCHHHHHHHH-HhCCce
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVN--VYINHEK----KFAFVEMRTVEEASNAM-ALDGII 245 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~--~~~~~~~----g~afv~f~~~~~a~~a~-~l~~~~ 245 (435)
..-.||+++||+.+...-|+++|..||.|=.+++......... ..-+.+. .-|+|+|.+...|..+. .||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4457999999999999999999999998621110000000000 0001111 24689999999999988 699999
Q ss_pred ecCce
Q 013837 246 FEGVA 250 (435)
Q Consensus 246 ~~g~~ 250 (435)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99976
No 180
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.93 E-value=0.0025 Score=64.84 Aligned_cols=75 Identities=13% Similarity=0.148 Sum_probs=64.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCcee--CCeEEEEEEccC
Q 013837 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM--GDKTLTVRRATA 373 (435)
Q Consensus 296 ~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~--~g~~l~V~~a~~ 373 (435)
+..+.|.+...+-..|..+|.+||.|.+++..++- ..|.|+|...+.|..|+++|+|..+ -|-+.+|.+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 44566667777888999999999999999988873 3799999999999999999999976 588999999987
Q ss_pred CCC
Q 013837 374 SSG 376 (435)
Q Consensus 374 ~~~ 376 (435)
.+.
T Consensus 374 ~~~ 376 (1007)
T KOG4574|consen 374 LPM 376 (1007)
T ss_pred ccc
Confidence 664
No 181
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.88 E-value=0.0026 Score=58.84 Aligned_cols=81 Identities=14% Similarity=0.143 Sum_probs=62.1
Q ss_pred cCCeEE-EcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceE
Q 013837 173 HARRVY-VGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (435)
Q Consensus 173 ~~~~l~-V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l 251 (435)
...+++ |++|++.+++++|+.+|..+|.|... .......++..+|||||.|.....+..++......+.++++
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~------r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSV------RLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPL 256 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceee------ccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCccc
Confidence 344555 99999999999999999999886431 11122234567899999999999999999557788999999
Q ss_pred EEcCCCCC
Q 013837 252 RVRRPTDY 259 (435)
Q Consensus 252 ~v~~~~~~ 259 (435)
.|.+....
T Consensus 257 ~~~~~~~~ 264 (285)
T KOG4210|consen 257 RLEEDEPR 264 (285)
T ss_pred ccccCCCC
Confidence 99876543
No 182
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.87 E-value=0.01 Score=54.42 Aligned_cols=78 Identities=15% Similarity=0.107 Sum_probs=57.2
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH-hCCceecCceE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVAV 251 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~-l~~~~~~g~~l 251 (435)
.--++||+||-|.+|++||.+.+...|-. .+ ...+-..+-..+.+||||+|...+....++.|+ |...+|+|..-
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~-~~---~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P 154 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLA-QF---ADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSP 154 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHH-HH---hhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCC
Confidence 34579999999999999999998877642 00 000012222346789999999999999999995 88889998765
Q ss_pred EEc
Q 013837 252 RVR 254 (435)
Q Consensus 252 ~v~ 254 (435)
.|-
T Consensus 155 ~V~ 157 (498)
T KOG4849|consen 155 TVL 157 (498)
T ss_pred eee
Confidence 554
No 183
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.85 E-value=0.014 Score=47.38 Aligned_cols=53 Identities=26% Similarity=0.333 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceEEEcCC
Q 013837 190 AIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRP 256 (435)
Q Consensus 190 ~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l~v~~~ 256 (435)
+|.+.|..||++ +-+++.. +.-+|+|.+.+.|.+|+.++|.+++|+.|+|..-
T Consensus 52 ~ll~~~~~~Gev------------vLvRfv~--~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LK 104 (146)
T PF08952_consen 52 ELLQKFAQYGEV------------VLVRFVG--DTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLK 104 (146)
T ss_dssp HHHHHHHCCS-E------------CEEEEET--TCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE-
T ss_pred HHHHHHHhCCce------------EEEEEeC--CeEEEEECccHHHHHHHccCCcEECCEEEEEEeC
Confidence 555666667763 3334332 5789999999999999999999999999999853
No 184
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.80 E-value=0.015 Score=56.42 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=57.5
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHH-HHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceec-
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFS-QVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFE- 247 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~- 247 (435)
.....+|||||+||.-++.++|..+|+ -||.|+-. .+-+|.+.+..+|-|=|+|.+...-.+||..--.+|.
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~ya------GIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h 439 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYV------GIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDH 439 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEE------EeccCcccCCCCCcceeeecccHHHHHHHhhheEEEec
Confidence 346789999999999999999999999 78875431 1112224455789999999999999999953333332
Q ss_pred ---CceEEEc
Q 013837 248 ---GVAVRVR 254 (435)
Q Consensus 248 ---g~~l~v~ 254 (435)
.+.|.|+
T Consensus 440 ~d~~KRVEIk 449 (520)
T KOG0129|consen 440 TDIDKRVEIK 449 (520)
T ss_pred cccceeeeec
Confidence 2456665
No 185
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.73 E-value=0.017 Score=49.50 Aligned_cols=82 Identities=13% Similarity=0.082 Sum_probs=51.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHh-cCCe---eEEEEeecCC-CCC-cceEEEEEEcCHHHHHHHHHHhCCceeC---C-
Q 013837 294 PDRVFVGGLPYYFTETQIKELLES-FGTL---HGFDLVKDRD-TGN-SKGYGFCVYQDPAVTDIACAALNGLKMG---D- 363 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~-~G~v---~~v~i~~~~~-tg~-~~G~afV~f~~~~~A~~Al~~l~g~~~~---g- 363 (435)
..+|.|++||+.+|++++.+.+.. ++.- ..+.-..... ... .-.-|||.|.+.+++...+..++|+.|- |
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 458999999999999999887776 5554 2232112111 111 2245999999999999999999998873 2
Q ss_pred -eEEEEEEccCCC
Q 013837 364 -KTLTVRRATASS 375 (435)
Q Consensus 364 -~~l~V~~a~~~~ 375 (435)
....|+||--+.
T Consensus 87 ~~~~~VE~Apyqk 99 (176)
T PF03467_consen 87 EYPAVVEFAPYQK 99 (176)
T ss_dssp EEEEEEEE-SS--
T ss_pred CcceeEEEcchhc
Confidence 467888886543
No 186
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.68 E-value=0.098 Score=47.33 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=56.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCe-EEEEEEcc
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK-TLTVRRAT 372 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~-~l~V~~a~ 372 (435)
...|.|-++|.. .-..|..+|++||.|++.... .+| .+-+|.|.+.-+|.+||. .||..|+|. .|-|..+.
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~---~ng---NwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP---SNG---NWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeecC---CCC---ceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 457888898876 345688999999999665443 223 388999999999999999 699999875 46677765
Q ss_pred CC
Q 013837 373 AS 374 (435)
Q Consensus 373 ~~ 374 (435)
.+
T Consensus 269 Dk 270 (350)
T KOG4285|consen 269 DK 270 (350)
T ss_pred CH
Confidence 54
No 187
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.59 E-value=0.0043 Score=56.97 Aligned_cols=80 Identities=19% Similarity=0.347 Sum_probs=62.2
Q ss_pred CeEEEcCCCCCCCHHHHH---HHHHhcCCeeEEEEeecCC----CCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 013837 295 DRVFVGGLPYYFTETQIK---ELLESFGTLHGFDLVKDRD----TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~---~~F~~~G~v~~v~i~~~~~----tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (435)
.-+||-+|+..+..+.+. +.|.+||.|..|.+..+.. .+-.- -+||.|...++|..||...+|+.+.|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 357888888776555443 5788999999988887652 11111 289999999999999999999999999999
Q ss_pred EEEccCCC
Q 013837 368 VRRATASS 375 (435)
Q Consensus 368 V~~a~~~~ 375 (435)
..|.+.+-
T Consensus 157 a~~gttky 164 (327)
T KOG2068|consen 157 ASLGTTKY 164 (327)
T ss_pred HhhCCCcc
Confidence 98886654
No 188
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=95.56 E-value=0.0048 Score=59.45 Aligned_cols=15 Identities=7% Similarity=-0.274 Sum_probs=6.0
Q ss_pred CCCCCCCHHHHHHHH
Q 013837 181 GLPPLANEQAIATFF 195 (435)
Q Consensus 181 nlp~~~t~~~l~~~f 195 (435)
|--+..|...+...|
T Consensus 556 ~~r~klt~~~~lk~r 570 (653)
T KOG2548|consen 556 NSRPKLTFFECLKSR 570 (653)
T ss_pred CCCCcccHHHHHHHH
Confidence 333344544433333
No 189
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.42 E-value=0.2 Score=39.06 Aligned_cols=68 Identities=12% Similarity=0.177 Sum_probs=52.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 363 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~-v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g 363 (435)
...+++...|..++-++|..+.+.+-. |..++|+++. ..++-.+.++|.+.+.|..-...+||..|+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344556666777777788777776654 7788998873 2356679999999999999999999998853
No 190
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.31 E-value=0.024 Score=55.43 Aligned_cols=79 Identities=20% Similarity=0.274 Sum_probs=55.3
Q ss_pred ccCCeEEEcCCCCCC--C----HHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCc
Q 013837 172 RHARRVYVGGLPPLA--N----EQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGI 244 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~--t----~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~ 244 (435)
.....|+|.|+|--- . ..-|.++|+++|+++..+.. . ..-+..+||.|++|.+..+|..|+ .|||+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P------~-~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~ 128 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYP------I-DEEGGTKGYLFVEYASMRDAKKAVKSLNGK 128 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeec------c-CccCCeeeEEEEEecChhhHHHHHHhcccc
Confidence 455689999998632 2 24466789999987553210 0 112447899999999999999999 69999
Q ss_pred eec-CceEEEcCCC
Q 013837 245 IFE-GVAVRVRRPT 257 (435)
Q Consensus 245 ~~~-g~~l~v~~~~ 257 (435)
.|. .+...|..-+
T Consensus 129 ~ldknHtf~v~~f~ 142 (698)
T KOG2314|consen 129 RLDKNHTFFVRLFK 142 (698)
T ss_pred eecccceEEeehhh
Confidence 875 4566665433
No 191
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.28 E-value=0.058 Score=46.36 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=45.8
Q ss_pred CHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhC--CceeCCeEEEEEEccCC
Q 013837 307 TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN--GLKMGDKTLTVRRATAS 374 (435)
Q Consensus 307 te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~--g~~~~g~~l~V~~a~~~ 374 (435)
..+.|+++|..|+.+..+.+++. -+=..|.|.+.+.|..|...|+ +..|.|..|+|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999999877766654 2358899999999999999999 99999999999999544
No 192
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=95.21 E-value=0.0049 Score=50.41 Aligned_cols=11 Identities=0% Similarity=-0.070 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 013837 189 QAIATFFSQVM 199 (435)
Q Consensus 189 ~~l~~~f~~~G 199 (435)
+++.+++.-.|
T Consensus 141 eEeiEMmk~MG 151 (196)
T KOG3263|consen 141 EEEIEMMKIMG 151 (196)
T ss_pred HHHHHHHHHhC
Confidence 33455555444
No 193
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.12 E-value=0.13 Score=41.24 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=53.9
Q ss_pred CCCCCeEEEcCCCCCC----CHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 013837 291 AEGPDRVFVGGLPYYF----TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTL 366 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~----te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l 366 (435)
..+..+|.|+=|..++ +...|...++.||+|.+|.+.- +--|.|.|.+..+|-+|+.+++. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 3455688887665554 3345666788999999987643 23699999999999999999876 5567777
Q ss_pred EEEEc
Q 013837 367 TVRRA 371 (435)
Q Consensus 367 ~V~~a 371 (435)
.+.|-
T Consensus 155 qCsWq 159 (166)
T PF15023_consen 155 QCSWQ 159 (166)
T ss_pred Eeecc
Confidence 77764
No 194
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.09 E-value=0.017 Score=51.00 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=45.1
Q ss_pred HHHHHHHH-HHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceEEEcCCCC
Q 013837 189 QAIATFFS-QVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTD 258 (435)
Q Consensus 189 ~~l~~~f~-~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~v~~~~~ 258 (435)
++|...|. +||+|...+ |.+..-..-.|-+||.|...++|.+|+ .||+--+.|++|...++..
T Consensus 83 Ed~f~E~~~kygEiee~~-------Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELN-------VCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhh-------hhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 44555555 788875432 122112223689999999999999999 6999999999999887543
No 195
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.74 E-value=0.2 Score=35.06 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 013837 305 YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (435)
Q Consensus 305 ~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V 368 (435)
.++-++|+..+..|+-. .|..++ .|| ||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 47889999999999763 344553 455 89999999999999999999998887654
No 196
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.30 E-value=0.048 Score=54.59 Aligned_cols=69 Identities=14% Similarity=0.140 Sum_probs=56.2
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
.+.-+|||+|+...+..+-++.++..+|.|..+. .. -|+|++|..+..+..|+ .++...++|..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~k------------r~---~fgf~~f~~~~~~~ra~r~~t~~~~~~~k 102 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWK------------RD---KFGFCEFLKHIGDLRASRLLTELNIDDQK 102 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhh------------hh---hhcccchhhHHHHHHHHHHhcccCCCcch
Confidence 4566899999999999999999999999864421 11 19999999999999999 57778888888
Q ss_pred EEEcC
Q 013837 251 VRVRR 255 (435)
Q Consensus 251 l~v~~ 255 (435)
+.+..
T Consensus 103 l~~~~ 107 (668)
T KOG2253|consen 103 LIENV 107 (668)
T ss_pred hhccc
Confidence 77753
No 197
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.16 E-value=0.3 Score=44.30 Aligned_cols=73 Identities=23% Similarity=0.327 Sum_probs=58.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCce-EE
Q 013837 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA-VR 252 (435)
Q Consensus 174 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~-l~ 252 (435)
..-|.|-++|+..+ .-|..+|..||. |++..+..+..+-+|.|.+.-+|.+||..||..|+|.. |-
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~------------Vvkhv~~~ngNwMhirYssr~~A~KALskng~ii~g~vmiG 263 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGE------------VVKHVTPSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIG 263 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCe------------eeeeecCCCCceEEEEecchhHHHHhhhhcCeeeccceEEe
Confidence 56788889988765 457889999998 55566667778999999999999999999999998854 56
Q ss_pred EcCCCCC
Q 013837 253 VRRPTDY 259 (435)
Q Consensus 253 v~~~~~~ 259 (435)
|..+.+.
T Consensus 264 VkpCtDk 270 (350)
T KOG4285|consen 264 VKPCTDK 270 (350)
T ss_pred eeecCCH
Confidence 7665544
No 198
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.30 E-value=0.46 Score=34.21 Aligned_cols=59 Identities=24% Similarity=0.318 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHhcCCe-----eEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 304 YYFTETQIKELLESFGTL-----HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 304 ~~~te~~l~~~F~~~G~v-----~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
..++..+|..++...+.| -.|.|... |+||+-... .|..++..|++..+.|+.|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 357788888888876554 34555443 899988654 788899999999999999999875
No 199
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.80 E-value=0.29 Score=44.15 Aligned_cols=62 Identities=23% Similarity=0.164 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC---CCcEEEEEecCHHHHHHHH-HhCCceecCceEEEcCCC
Q 013837 188 EQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH---EKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPT 257 (435)
Q Consensus 188 ~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~---~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~v~~~~ 257 (435)
++++.+-..+||.|..+ |+...-+. ..--.||+|...++|.+|+ .|||..|+|+.+...+-+
T Consensus 300 ede~keEceKyg~V~~v--------iifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNV--------IIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeE--------EEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 46778888999987432 22222111 1235799999999999999 799999999998877643
No 200
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.69 E-value=0.13 Score=51.65 Aligned_cols=70 Identities=26% Similarity=0.410 Sum_probs=59.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
.+..++||+|+-..+..+-++.+...+|.|..+.... |+|++|..+..+..|+..|+-..++|..+.+.-
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3456899999999999999999999999986554433 899999999999999999999999888776665
No 201
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.38 E-value=0.59 Score=44.92 Aligned_cols=68 Identities=18% Similarity=0.293 Sum_probs=58.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 363 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~-v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g 363 (435)
...|+|-.+|..+|-.||..|+..|-. |..|+|++|.. ..+=.++|.|.+.++|....+.+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 678999999999999999999998765 89999999743 234468999999999999999999998853
No 202
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=92.34 E-value=0.15 Score=45.43 Aligned_cols=80 Identities=23% Similarity=0.448 Sum_probs=54.2
Q ss_pred CCCeEEEcCCCCC------------CCHHHHHHHHHhcCCeeEEEEeec-C----CCCCc-----ceE---------EEE
Q 013837 293 GPDRVFVGGLPYY------------FTETQIKELLESFGTLHGFDLVKD-R----DTGNS-----KGY---------GFC 341 (435)
Q Consensus 293 ~~~~l~V~nLp~~------------~te~~l~~~F~~~G~v~~v~i~~~-~----~tg~~-----~G~---------afV 341 (435)
.+.||++.+||.. .++.-|...|+.||.|..|.|+.- + .+|+. .|| |||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3457888777754 356789999999999988887642 1 23443 233 457
Q ss_pred EEcCHHHHHHHHHHhCCcee----CC----eEEEEEEcc
Q 013837 342 VYQDPAVTDIACAALNGLKM----GD----KTLTVRRAT 372 (435)
Q Consensus 342 ~f~~~~~A~~Al~~l~g~~~----~g----~~l~V~~a~ 372 (435)
+|.....-..|+.+|.|..+ .| -.|+|.|..
T Consensus 228 qfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdr 266 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDR 266 (445)
T ss_pred HHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccch
Confidence 77777777888888888765 22 356676653
No 203
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=91.59 E-value=1.3 Score=30.56 Aligned_cols=55 Identities=16% Similarity=0.251 Sum_probs=38.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH
Q 013837 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM 239 (435)
Q Consensus 174 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~ 239 (435)
...|+|.|+ .+++.++|+.+|..|... .....+... +-..|-|.|.+.+.|.+||
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~---------~~~~~IEWI-dDtScNvvf~d~~~A~~AL 59 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDE---------EGPFRIEWI-DDTSCNVVFKDEETAARAL 59 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhccc---------CCCceEEEe-cCCcEEEEECCHHHHHHHH
Confidence 347999999 457788999999999221 012222221 2346789999999999998
No 204
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=90.24 E-value=1.1 Score=39.94 Aligned_cols=74 Identities=18% Similarity=0.091 Sum_probs=55.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH-h--CC--ceecCc
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-L--DG--IIFEGV 249 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~-l--~~--~~~~g~ 249 (435)
..|+|.||...+..+.|...|..||.|-.. +++...-+...+-++|+|...-.|.+|+. . .+ .+..+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~a-------v~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~ 104 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERA-------VAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGR 104 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchh-------eeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCC
Confidence 579999999999999999999999987442 23333345667889999999999999984 2 22 334556
Q ss_pred eEEEcC
Q 013837 250 AVRVRR 255 (435)
Q Consensus 250 ~l~v~~ 255 (435)
+..|..
T Consensus 105 p~~VeP 110 (275)
T KOG0115|consen 105 PVGVEP 110 (275)
T ss_pred ccCCCh
Confidence 666653
No 205
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.64 E-value=0.13 Score=44.08 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=42.0
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHH-HHHhhcCCCCCCCCceEEEE--ecC------CCcEEEEEecCHHHHHHHH-HhC
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQ-VMTAIGGNSAGPGDAVVNVY--INH------EKKFAFVEMRTVEEASNAM-ALD 242 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~~~~~~~~~~v~~~~--~~~------~~g~afv~f~~~~~a~~a~-~l~ 242 (435)
...+|.|++||+++|++++.+.+.. ++.... ...+. .+. .-.-|||.|.+.+++...+ .++
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~---------w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~ 76 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWD---------WYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFD 76 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE------------EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccc---------eEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcC
Confidence 4568999999999999999986665 332100 11111 111 1258999999999999888 599
Q ss_pred CceecC
Q 013837 243 GIIFEG 248 (435)
Q Consensus 243 ~~~~~g 248 (435)
|+.|.+
T Consensus 77 g~~F~D 82 (176)
T PF03467_consen 77 GHVFVD 82 (176)
T ss_dssp TEEEE-
T ss_pred CcEEEC
Confidence 988754
No 206
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.56 E-value=2.4 Score=40.92 Aligned_cols=67 Identities=12% Similarity=0.271 Sum_probs=52.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec-CCCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-HEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 174 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~-~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
+..|+|-.+|..+|..||..|...+-..+. .|.-+..+ .++-.+.|.|.+.++|..+. ++||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~--------~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQIS--------DIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhh--------eeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 778999999999999999999998865422 13333333 23457889999999999999 699998875
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.27 E-value=2.1 Score=29.96 Aligned_cols=54 Identities=11% Similarity=0.123 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceEEE
Q 013837 185 LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 253 (435)
Q Consensus 185 ~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~v 253 (435)
.++-++|+..+..|+- ..+... ..| -||.|.+..+|++|. ..++..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-------------~~I~~d-~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-------------DRIRDD-RTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-------------ceEEec-CCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4678999999999852 222221 234 489999999999999 58888888777665
No 208
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=87.56 E-value=0.95 Score=33.01 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=36.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA 240 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~ 240 (435)
...+|. +|......||.++|..||.| .-..+ +-..|||.....+.|..|+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I------------~VsWi--~dTSAfV~l~~r~~~~~v~~ 60 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI------------YVSWI--NDTSAFVALHNRDQAKVVMN 60 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE------------EEEEE--CTTEEEEEECCCHHHHHHHH
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE------------EEEEE--cCCcEEEEeecHHHHHHHHH
Confidence 345555 99999999999999999863 22333 34689999999999999983
No 209
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=87.39 E-value=0.57 Score=34.81 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=47.3
Q ss_pred EEEEecCHHHHHHHHHhCCc--eecCceEEEc--CCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEc
Q 013837 225 AFVEMRTVEEASNAMALDGI--IFEGVAVRVR--RPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVG 300 (435)
Q Consensus 225 afv~f~~~~~a~~a~~l~~~--~~~g~~l~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~ 300 (435)
|+|+|.+..-|...+.+..+ .+++..+.|. .......... ........++|.|.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~----------------------qv~~~vs~rtVlvs 58 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKF----------------------QVFSGVSKRTVLVS 58 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEE----------------------EEEEcccCCEEEEe
Confidence 68999999999999965444 4556555553 1111100000 00012345789999
Q ss_pred CCCCCCCHHHHHHHHHhcCCeeEEEEeecC
Q 013837 301 GLPYYFTETQIKELLESFGTLHGFDLVKDR 330 (435)
Q Consensus 301 nLp~~~te~~l~~~F~~~G~v~~v~i~~~~ 330 (435)
|||....+++|++. +.|.+.+..
T Consensus 59 gip~~l~ee~l~D~-------LeIhFqK~s 81 (88)
T PF07292_consen 59 GIPDVLDEEELRDK-------LEIHFQKPS 81 (88)
T ss_pred CCCCCCChhhheee-------EEEEEecCC
Confidence 99999999999874 445555543
No 210
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.20 E-value=2.7 Score=41.88 Aligned_cols=81 Identities=15% Similarity=0.246 Sum_probs=62.4
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHHhc----CCeeEEEEeecC----------CCCC---------------------
Q 013837 291 AEGPDRVFVGGLPYY-FTETQIKELLESF----GTLHGFDLVKDR----------DTGN--------------------- 334 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~v~~v~i~~~~----------~tg~--------------------- 334 (435)
...++.|-|-||.|. +..+||.-+|+.| |.|++|.|.... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456778999999986 7889999998876 578999887531 0121
Q ss_pred ----------------cceEEEEEEcCHHHHHHHHHHhCCceeC--CeEEEEEEc
Q 013837 335 ----------------SKGYGFCVYQDPAVTDIACAALNGLKMG--DKTLTVRRA 371 (435)
Q Consensus 335 ----------------~~G~afV~f~~~~~A~~Al~~l~g~~~~--g~~l~V~~a 371 (435)
-.=||.|+|.+++.|.+....+.|..|. +..|-+.|.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 0127999999999999999999999996 566666664
No 211
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=84.65 E-value=1.9 Score=37.15 Aligned_cols=59 Identities=22% Similarity=0.158 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhC--CceecCceEEEcCCCC
Q 013837 188 EQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALD--GIIFEGVAVRVRRPTD 258 (435)
Q Consensus 188 ~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~--~~~~~g~~l~v~~~~~ 258 (435)
.+.|+++|..|+. ++....-.+-+-..|.|.+.+.|..|. .|+ +..+.|..++|.++..
T Consensus 9 ~~~l~~l~~~~~~------------~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 9 LAELEELFSTYDP------------PVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp HHHHHHHHHTT-S------------S-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred HHHHHHHHHhcCC------------ceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4778888888865 445555567788999999999999999 588 8999999999988743
No 212
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=84.48 E-value=2.9 Score=37.77 Aligned_cols=48 Identities=4% Similarity=0.013 Sum_probs=39.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHH
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVE 233 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~ 233 (435)
..|+|+||+.++--.||+..+...|.+ -..+......|-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~-----------pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT-----------PMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC-----------ceeEeeecCCcceeEecCCcc
Confidence 459999999999999999999988652 556667778899999998754
No 213
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=84.07 E-value=0.9 Score=39.95 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=4.4
Q ss_pred CCCCCccccCCC
Q 013837 22 VSGRSRTGERGR 33 (435)
Q Consensus 22 ~~~r~~~r~r~r 33 (435)
+....+++.+++
T Consensus 15 sp~~~Rsr~~s~ 26 (293)
T KOG1882|consen 15 SPRGNRSRGRSR 26 (293)
T ss_pred Cccccccchhhh
Confidence 333333333333
No 214
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=83.73 E-value=1.5 Score=43.39 Aligned_cols=70 Identities=14% Similarity=0.266 Sum_probs=50.7
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH-h--CCceecC
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-L--DGIIFEG 248 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~-l--~~~~~~g 248 (435)
..-|.|+|+-||..+-+++|+.||..- -+ -.++++.+..+.+ .||+|.+..+|+.|.. | .-.+|.|
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~e--nc--------Pk~iscefa~N~n-WyITfesd~DAQqAykylreevk~fqg 241 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGE--NC--------PKVISCEFAHNDN-WYITFESDTDAQQAYKYLREEVKTFQG 241 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccC--CC--------CCceeeeeeecCc-eEEEeecchhHHHHHHHHHHHHHhhcC
Confidence 455778999999999999999999842 00 1367777665544 6999999999999973 2 2245666
Q ss_pred ceEE
Q 013837 249 VAVR 252 (435)
Q Consensus 249 ~~l~ 252 (435)
++|.
T Consensus 242 KpIm 245 (684)
T KOG2591|consen 242 KPIM 245 (684)
T ss_pred cchh
Confidence 6543
No 215
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=82.89 E-value=5.3 Score=31.18 Aligned_cols=66 Identities=12% Similarity=0.163 Sum_probs=40.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC-CCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH-EKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~-~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
..+.+...|..++-++|..+...+-..+. .+..++.+. ++-.+.++|.+.+.|..+. .+||..|+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~--------~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIE--------HIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEE--------EEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 33444444455566666655555533211 122223232 4457889999999999999 699988864
No 216
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=81.61 E-value=6.8 Score=31.80 Aligned_cols=73 Identities=14% Similarity=0.082 Sum_probs=49.2
Q ss_pred ccCCeEEEcCCCCCC-CHHH---HHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCcee
Q 013837 172 RHARRVYVGGLPPLA-NEQA---IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF 246 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~-t~~~---l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~ 246 (435)
.+-.||.|+=|..++ ..+| |...+..||.| ..+ +...+..|.|.|.+..+|-.|+ ++.. ..
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI------------~SV-T~cGrqsavVvF~d~~SAC~Av~Af~s-~~ 149 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPI------------QSV-TLCGRQSAVVVFKDITSACKAVSAFQS-RA 149 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCc------------cee-eecCCceEEEEehhhHHHHHHHHhhcC-CC
Confidence 445689998776665 2334 44556677764 222 3346789999999999999999 4554 56
Q ss_pred cCceEEEcCCCC
Q 013837 247 EGVAVRVRRPTD 258 (435)
Q Consensus 247 ~g~~l~v~~~~~ 258 (435)
.|..+...|-..
T Consensus 150 pgtm~qCsWqqr 161 (166)
T PF15023_consen 150 PGTMFQCSWQQR 161 (166)
T ss_pred CCceEEeecccc
Confidence 667777766543
No 217
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=78.74 E-value=9.7 Score=34.54 Aligned_cols=48 Identities=10% Similarity=0.057 Sum_probs=37.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCe-eEEEEeecCCCCCcceEEEEEEcCHH
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTL-HGFDLVKDRDTGNSKGYGFCVYQDPA 347 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v-~~v~i~~~~~tg~~~G~afV~f~~~~ 347 (435)
..-|+|+||+.++--.||+..+.+.|.+ ..|.+. -+.|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCcc
Confidence 3569999999999999999999998874 333332 24678999997753
No 218
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=78.28 E-value=3.7 Score=42.84 Aligned_cols=73 Identities=22% Similarity=0.237 Sum_probs=59.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCcee--cCce
Q 013837 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF--EGVA 250 (435)
Q Consensus 174 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~--~g~~ 250 (435)
..+..+.|.+-..+-.-|..+|..||. +.+..+-+.-..|.|+|.+.+.|..|+ ++.|..+ .|-+
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~------------v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~P 365 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGS------------VASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAP 365 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcc------------hhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCc
Confidence 345677788888899999999999998 555666667789999999999999999 6998764 5778
Q ss_pred EEEcCCCC
Q 013837 251 VRVRRPTD 258 (435)
Q Consensus 251 l~v~~~~~ 258 (435)
.+|.+++.
T Consensus 366 s~V~~ak~ 373 (1007)
T KOG4574|consen 366 SRVSFAKT 373 (1007)
T ss_pred eeEEeccc
Confidence 88876653
No 219
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=77.49 E-value=0.69 Score=42.89 Aligned_cols=74 Identities=22% Similarity=0.312 Sum_probs=52.1
Q ss_pred CeEEEcCCCCCCCHHHHH---HHHHHHHHhhcCCCCCCCCceEEEEec----C--CCcEEEEEecCHHHHHHHH-HhCCc
Q 013837 175 RRVYVGGLPPLANEQAIA---TFFSQVMTAIGGNSAGPGDAVVNVYIN----H--EKKFAFVEMRTVEEASNAM-ALDGI 244 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~---~~f~~~G~i~~~~~~~~~~~v~~~~~~----~--~~g~afv~f~~~~~a~~a~-~l~~~ 244 (435)
.-+||-+|+..+..+.+. ++|.+||.|.. |...... . ..--+||+|...++|..|| ..+|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~k---------i~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~ 148 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINK---------IVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGF 148 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceE---------EeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhH
Confidence 457888998877555544 47888887644 2221111 1 1224899999999999999 69999
Q ss_pred eecCceEEEcCCC
Q 013837 245 IFEGVAVRVRRPT 257 (435)
Q Consensus 245 ~~~g~~l~v~~~~ 257 (435)
.+.|+.|+..+..
T Consensus 149 ~~dg~~lka~~gt 161 (327)
T KOG2068|consen 149 VDDGRALKASLGT 161 (327)
T ss_pred HhhhhhhHHhhCC
Confidence 9999998776654
No 220
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=76.43 E-value=1.1 Score=37.21 Aligned_cols=119 Identities=14% Similarity=0.106 Sum_probs=75.3
Q ss_pred eEEEcCCC--CCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceEEE
Q 013837 176 RVYVGGLP--PLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRV 253 (435)
Q Consensus 176 ~l~V~nlp--~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l~v 253 (435)
...|+.+. ..++-..|...+...=.. ...+.-..+ ..++..+.|.+.+++..++......+.|..+.+
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~--------~~~~~i~~l--~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l 86 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKL--------KGGVKIRDL--GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLIL 86 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCC--------CCcEEEEEe--CCCeEEEEEEeccceeEEEecccccccccchhh
Confidence 34455442 235666666666653111 111222233 568999999999999999987778888888888
Q ss_pred cCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEe
Q 013837 254 RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYY-FTETQIKELLESFGTLHGFDLV 327 (435)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~v~~v~i~ 327 (435)
....+..... ..........|.|.|||.. .+++-|..+.+.+|.+..+...
T Consensus 87 ~~W~~~~~~~-----------------------~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 87 QRWSPDFNPS-----------------------EVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred hhhccccccc-----------------------ccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 7554321100 0000112235778899987 6888899999999999766543
No 221
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=75.58 E-value=5.8 Score=27.95 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCC-eeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 013837 309 TQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (435)
Q Consensus 309 ~~l~~~F~~~G~-v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~ 374 (435)
++|.+.|...|. |..|.-+..+.++...-.-||+++...+...++ +=..+++..|+|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCCC
Confidence 578888998886 777776776656666778899988776644333 336788999999987543
No 222
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=73.95 E-value=8.9 Score=35.11 Aligned_cols=83 Identities=11% Similarity=0.116 Sum_probs=61.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC-------CCCcceEEEEEEcCHHHHHHH----HHHhCC--
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD-------TGNSKGYGFCVYQDPAVTDIA----CAALNG-- 358 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~-------tg~~~G~afV~f~~~~~A~~A----l~~l~g-- 358 (435)
-.++.|.+.|+...++--.+...|-+||+|++|.++.+.. .-+....+.+.|-+.+.+... ++.|+.
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 3456799999999999999999999999999999998751 112334688999998877643 344443
Q ss_pred ceeCCeEEEEEEccCC
Q 013837 359 LKMGDKTLTVRRATAS 374 (435)
Q Consensus 359 ~~~~g~~l~V~~a~~~ 374 (435)
..+....|+|.|+.-+
T Consensus 93 ~~L~S~~L~lsFV~l~ 108 (309)
T PF10567_consen 93 TKLKSESLTLSFVSLN 108 (309)
T ss_pred HhcCCcceeEEEEEEe
Confidence 2567788888888643
No 223
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=73.73 E-value=4.4 Score=34.26 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=52.8
Q ss_pred CCeEEEcCCCCCCC--H---HHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCe-EEE
Q 013837 294 PDRVFVGGLPYYFT--E---TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK-TLT 367 (435)
Q Consensus 294 ~~~l~V~nLp~~~t--e---~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~-~l~ 367 (435)
...+++.+++..+- . .....+|-.|.......+++ +.++.-|.|.+.+.|..|...+++..|.|+ .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 45677777766542 2 23345566666554444444 345778999999999999999999999988 888
Q ss_pred EEEccCC
Q 013837 368 VRRATAS 374 (435)
Q Consensus 368 V~~a~~~ 374 (435)
.-|+...
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 8887554
No 224
>KOG2812 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.69 E-value=11 Score=35.44 Aligned_cols=16 Identities=13% Similarity=0.067 Sum_probs=7.2
Q ss_pred EEEEEcCHHHHHHHHH
Q 013837 339 GFCVYQDPAVTDIACA 354 (435)
Q Consensus 339 afV~f~~~~~A~~Al~ 354 (435)
+||--.+-.-+..|+.
T Consensus 364 GYVMSGSRHrrMeAvR 379 (426)
T KOG2812|consen 364 GYVMSGSRHRRMEAVR 379 (426)
T ss_pred ceeeccchHHHHHHHH
Confidence 3444444444444444
No 225
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=70.40 E-value=9.4 Score=27.32 Aligned_cols=61 Identities=26% Similarity=0.324 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceEEEcC
Q 013837 185 LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRR 255 (435)
Q Consensus 185 ~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~v~~ 255 (435)
.++..+|..++...+.|-. ..|-.+.+. ..|+||+-... .|..++ .|++..+.|++|.|+.
T Consensus 12 g~~~~~iv~~i~~~~gi~~-------~~IG~I~I~--~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPG-------RDIGRIDIF--DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp T--HHHHHHHHHTCTTB-G-------GGEEEEEE---SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred CCCHHHHHHHHHhccCCCH-------HhEEEEEEe--eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 5788899999998766533 235555553 46889988765 566666 6999999999999874
No 226
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.96 E-value=29 Score=35.00 Aligned_cols=71 Identities=23% Similarity=0.345 Sum_probs=53.2
Q ss_pred cccCCeEEEcCCCCC-CCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCC----------------------------
Q 013837 171 TRHARRVYVGGLPPL-ANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE---------------------------- 221 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~---------------------------- 221 (435)
....+.|-|-||.|. +...+|.-+|+.|-. ++..|+.|.+..+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP--------~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~ 242 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLP--------KGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKE 242 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcC--------CCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcc
Confidence 456789999999996 789999999999833 2333444443211
Q ss_pred -------------------------CcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 222 -------------------------KKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 222 -------------------------~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
--||.|+|.+.+.|.... .-+|..|..-
T Consensus 243 s~sD~ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 243 SESDDEEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred cccchhhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 038999999999999998 6999988753
No 227
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=68.07 E-value=8.2 Score=30.51 Aligned_cols=49 Identities=10% Similarity=0.244 Sum_probs=27.8
Q ss_pred eEEEcCCCCCC---------CHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHH
Q 013837 296 RVFVGGLPYYF---------TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347 (435)
Q Consensus 296 ~l~V~nLp~~~---------te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~ 347 (435)
+++|-|++... +-+.|.+.|..|..+. +..+.++. -+.|++.|+|...-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCCh
Confidence 46677775443 4578999999999875 55555542 46899999998753
No 228
>PF02956 TT_ORF1: TT viral orf 1; InterPro: IPR004219 Torque teno virus, isolated initially from a Japanese patient with hepatitis of unknown aetiology, has since been found to infect both healthy and diseased individuals and numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF1 is a large 750 residue protein.
Probab=67.86 E-value=4.8 Score=40.94 Aligned_cols=8 Identities=0% Similarity=0.161 Sum_probs=3.2
Q ss_pred eEEEEEEc
Q 013837 364 KTLTVRRA 371 (435)
Q Consensus 364 ~~l~V~~a 371 (435)
..|-+.+.
T Consensus 378 N~iw~~~~ 385 (525)
T PF02956_consen 378 NKIWLQSC 385 (525)
T ss_pred eEEEEEec
Confidence 34444333
No 229
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=66.47 E-value=13 Score=26.19 Aligned_cols=62 Identities=26% Similarity=0.228 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCC-eeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 013837 309 TQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (435)
Q Consensus 309 ~~l~~~F~~~G~-v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~ 373 (435)
++|.+.|.++|- +..|.-+....++.+...-||+.....+-.. .|+=..++|..|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 468899999996 7888888777777777788888877644333 2333577899999987643
No 230
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.30 E-value=29 Score=33.20 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=46.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCe-eEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHH
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTL-HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v-~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~ 355 (435)
.-...|-|-++|.....+||..+|+.|+.- -.|+++-+. .||-.|.+...|..||..
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 345688899999999999999999999862 345555542 699999999999999983
No 231
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.57 E-value=26 Score=33.52 Aligned_cols=58 Identities=12% Similarity=0.169 Sum_probs=45.9
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHh
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMAL 241 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l 241 (435)
.-...|-|.++|.....+||...|..|+.- -.+++.- ....||..|.+...|..||.+
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~k-----------gfdIkWv-DdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNK-----------GFDIKWV-DDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcC-----------CceeEEe-ecceeEEeecchHHHHHHhhc
Confidence 445779999999999889999999999862 2233322 346899999999999999966
No 232
>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A.
Probab=52.65 E-value=8.5 Score=27.56 Aligned_cols=17 Identities=12% Similarity=0.315 Sum_probs=12.1
Q ss_pred CcceeEEeccccccCCC
Q 013837 418 TLAKVLCLTEMMKSMKK 434 (435)
Q Consensus 418 ~p~~v~~l~n~~~~~~~ 434 (435)
.+++.++|.||++|..|
T Consensus 52 ~aS~C~lLkNMFDP~~E 68 (73)
T PF15519_consen 52 IASRCFLLKNMFDPAEE 68 (73)
T ss_dssp ---SEEEEESSS-TTCG
T ss_pred CCCceeeeecCCCcccc
Confidence 78999999999999875
No 233
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=51.70 E-value=2e+02 Score=26.64 Aligned_cols=181 Identities=9% Similarity=0.042 Sum_probs=92.8
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEE-EecCCCcEEEEEecCHHHHHHHH-H----hCC--
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV-YINHEKKFAFVEMRTVEEASNAM-A----LDG-- 243 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~-~~~~~~g~afv~f~~~~~a~~a~-~----l~~-- 243 (435)
=..+.|...||...++-..+...|-+||.|...+++...+.-.+. .-......+.+-|-+.+.|.... . |..
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 356789999999999888888888899886543322111100000 01122467888999988887664 1 222
Q ss_pred ceecCceEEEcCCCC-CCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHH-HHH---HHhc
Q 013837 244 IIFEGVAVRVRRPTD-YNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQI-KEL---LESF 318 (435)
Q Consensus 244 ~~~~g~~l~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l-~~~---F~~~ 318 (435)
..+....|.|.+..- +...... ................-.......++.|+|.-- ..+..+++ .+. +..-
T Consensus 93 ~~L~S~~L~lsFV~l~y~~~~~~----~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~ 167 (309)
T PF10567_consen 93 TKLKSESLTLSFVSLNYQKKTDP----NDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNS 167 (309)
T ss_pred HhcCCcceeEEEEEEeccccccc----cccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccC
Confidence 234455555554321 1100000 000000000000000001122344567777644 33433333 222 2222
Q ss_pred C----CeeEEEEeecCCC--CCcceEEEEEEcCHHHHHHHHHHhC
Q 013837 319 G----TLHGFDLVKDRDT--GNSKGYGFCVYQDPAVTDIACAALN 357 (435)
Q Consensus 319 G----~v~~v~i~~~~~t--g~~~G~afV~f~~~~~A~~Al~~l~ 357 (435)
+ .|+.|.|+.-.+. .-++.||.+.|-+...|...+.-|.
T Consensus 168 ~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 168 NNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred CCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 3 2677777764322 2256799999999999999888664
No 234
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=51.15 E-value=2.2 Score=42.18 Aligned_cols=72 Identities=17% Similarity=0.220 Sum_probs=50.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 363 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g 363 (435)
...+.|||.|++++++-.+|..+|+.+-.++.+.+-....-.+-.-+.+|.|.---....|+.+||+..+..
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 345679999999999999999999999887766654432112233467899976666666666677665543
No 235
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.80 E-value=2.6 Score=40.53 Aligned_cols=78 Identities=6% Similarity=-0.230 Sum_probs=59.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~ 373 (435)
...++..||..+++.++.-+|..||.|.-+.+....+.|...-.+||.-.+ ..|..+|+-+....+.|..++|.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 346788899999999999999999999888776665555556677776644 456667777777777788888887744
No 236
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=49.00 E-value=17 Score=34.64 Aligned_cols=65 Identities=20% Similarity=0.294 Sum_probs=46.3
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec-C-------CCcEEEEEecCHHHHHHHH-HhCC
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-H-------EKKFAFVEMRTVEEASNAM-ALDG 243 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~-~-------~~g~afv~f~~~~~a~~a~-~l~~ 243 (435)
..+.|.|.+||+..++.+|.+-+.+|-.- +....+. . --+.|||.|...++..... -++|
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~-----------v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g 74 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEH-----------VNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDG 74 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccc-----------cchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCc
Confidence 35689999999999999999888875321 1111111 1 1368999999999977777 4888
Q ss_pred ceecC
Q 013837 244 IIFEG 248 (435)
Q Consensus 244 ~~~~g 248 (435)
+.|..
T Consensus 75 ~ifld 79 (376)
T KOG1295|consen 75 YIFLD 79 (376)
T ss_pred eEEec
Confidence 87643
No 237
>KOG3869 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.98 E-value=13 Score=35.64 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=5.9
Q ss_pred CCHHHHHHHHHHH
Q 013837 186 ANEQAIATFFSQV 198 (435)
Q Consensus 186 ~t~~~l~~~f~~~ 198 (435)
.+++++..-+...
T Consensus 361 LSe~E~~arl~eM 373 (450)
T KOG3869|consen 361 LSEAERAARLREM 373 (450)
T ss_pred ccHHHHHHHHHHH
Confidence 4455544444433
No 238
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=46.18 E-value=21 Score=34.03 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=47.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeecCCC--CCcceEEEEEEcCHHHHHHHHHHhCCcee
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDT--GNSKGYGFCVYQDPAVTDIACAALNGLKM 361 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~-v~~v~i~~~~~t--g~~~G~afV~f~~~~~A~~Al~~l~g~~~ 361 (435)
...|.|.+||+..++++|.+-..+|-. |....+.+.... ..-.+.|||.|...++...-...++|+.|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 467999999999999998887777543 322333321100 11246799999999998777777888876
No 239
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=46.03 E-value=1.2e+02 Score=22.47 Aligned_cols=57 Identities=11% Similarity=0.090 Sum_probs=41.2
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cCC-eeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHh
Q 013837 297 VFVGGLPYYFTETQIKELLES-FGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356 (435)
Q Consensus 297 l~V~nLp~~~te~~l~~~F~~-~G~-v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l 356 (435)
-|+--.+..++..+|++.++. ||. |..|....-+. ..--|||.|...+.|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHhh
Confidence 344456788999999999997 664 77777666542 2335999999988888765543
No 240
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=45.27 E-value=86 Score=30.23 Aligned_cols=81 Identities=17% Similarity=0.298 Sum_probs=58.3
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHHhc----CCeeEEEEeecC-----------------------------------
Q 013837 291 AEGPDRVFVGGLPYY-FTETQIKELLESF----GTLHGFDLVKDR----------------------------------- 330 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~v~~v~i~~~~----------------------------------- 330 (435)
..+++.|-|-||.+. +...||...|+.| |.|..|.|....
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 456778999999876 7788999988865 457777765421
Q ss_pred -----CCCC------c-------------------ceEEEEEEcCHHHHHHHHHHhCCceeC--CeEEEEEEc
Q 013837 331 -----DTGN------S-------------------KGYGFCVYQDPAVTDIACAALNGLKMG--DKTLTVRRA 371 (435)
Q Consensus 331 -----~tg~------~-------------------~G~afV~f~~~~~A~~Al~~l~g~~~~--g~~l~V~~a 371 (435)
..|. - .-||.|+|.+.+.+......+.|..+. +..+-+.|.
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 0000 0 127899999999999999999998875 456666665
No 241
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=42.71 E-value=1.5e+02 Score=25.36 Aligned_cols=80 Identities=10% Similarity=0.116 Sum_probs=49.6
Q ss_pred cCCeEEEcCCCCCC-CHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc-
Q 013837 173 HARRVYVGGLPPLA-NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV- 249 (435)
Q Consensus 173 ~~~~l~V~nlp~~~-t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~- 249 (435)
-..++++.+|+..+ ++...+..|......+. ...-...-++.+..-|.|.+++.|..|. .+.+..|.|.
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n--------~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~ 80 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQIN--------EDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKN 80 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhC--------cchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCc
Confidence 34568888888764 33333333333221111 1222233456778889999999999998 7899999887
Q ss_pred eEEEcCCCCCC
Q 013837 250 AVRVRRPTDYN 260 (435)
Q Consensus 250 ~l~v~~~~~~~ 260 (435)
.++.-++....
T Consensus 81 ~~k~yfaQ~~~ 91 (193)
T KOG4019|consen 81 ELKLYFAQPGH 91 (193)
T ss_pred eEEEEEccCCC
Confidence 66666655443
No 242
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=39.99 E-value=1.4e+02 Score=21.56 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=40.9
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cCC-eeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHh
Q 013837 297 VFVGGLPYYFTETQIKELLES-FGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356 (435)
Q Consensus 297 l~V~nLp~~~te~~l~~~F~~-~G~-v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l 356 (435)
-|+-..+..++..+|+..++. ||. |..|..+.-+. ..--|||.+..-+.|...-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHhh
Confidence 455567889999999999997 564 77776665542 2335999999888887655433
No 243
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=38.20 E-value=1.4e+02 Score=24.61 Aligned_cols=56 Identities=14% Similarity=0.075 Sum_probs=38.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh-cCC-eeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHH
Q 013837 296 RVFVGGLPYYFTETQIKELLES-FGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354 (435)
Q Consensus 296 ~l~V~nLp~~~te~~l~~~F~~-~G~-v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~ 354 (435)
..|+--.+...+..+|++.++. |+. |..|..+.-+. | .--|||.+....+|.....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g--~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-G--LKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-C--ceEEEEEECCCCcHHHHHH
Confidence 3455556778999999999997 654 66776655542 2 2259999988777665444
No 244
>PRK11901 hypothetical protein; Reviewed
Probab=37.97 E-value=69 Score=30.12 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=39.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEE--EEEcCHHHHHHHHHHhC
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGF--CVYQDPAVTDIACAALN 357 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~af--V~f~~~~~A~~Al~~l~ 357 (435)
.+|-|-.+ -.++.|..|...++ +..+.++...-.|+.+ |.. =.|.+.++|..|+..|-
T Consensus 246 YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLP 305 (327)
T PRK11901 246 YTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLP 305 (327)
T ss_pred eEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCC
Confidence 34555443 45788888888775 4556666654445544 543 36899999999999874
No 245
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=37.14 E-value=92 Score=21.44 Aligned_cols=18 Identities=11% Similarity=0.432 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCCeeEEEE
Q 013837 309 TQIKELLESFGTLHGFDL 326 (435)
Q Consensus 309 ~~l~~~F~~~G~v~~v~i 326 (435)
++|+++|+.+|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999865544
No 246
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=36.15 E-value=37 Score=30.17 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=28.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFD 325 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~ 325 (435)
....+||+-|+|..+|++-|..+.+.+|.+..+.
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 4457999999999999999999999998765443
No 247
>PF14893 PNMA: PNMA
Probab=34.75 E-value=34 Score=32.52 Aligned_cols=80 Identities=14% Similarity=0.195 Sum_probs=45.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHH----hcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeE
Q 013837 290 GAEGPDRVFVGGLPYYFTETQIKELLE----SFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT 365 (435)
Q Consensus 290 ~~~~~~~l~V~nLp~~~te~~l~~~F~----~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~ 365 (435)
+.+..+.|.|.+||.+|++++|.+.+. .+|...-+.-+..++.+ . --|+|+|...-+-...=.. ..-.|..
T Consensus 14 ~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~-~-~aalve~~e~~n~~~iP~~---i~g~gg~ 88 (331)
T PF14893_consen 14 GVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN-A-KAALVEFAEDVNYSLIPRE---IPGKGGP 88 (331)
T ss_pred CcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc-c-ceeeeecccccchhhCchh---cCCCCCc
Confidence 345567899999999999999887765 45553211111111212 2 3689999764332211111 1224667
Q ss_pred EEEEEccCC
Q 013837 366 LTVRRATAS 374 (435)
Q Consensus 366 l~V~~a~~~ 374 (435)
-+|-|..+.
T Consensus 89 W~Vv~~p~~ 97 (331)
T PF14893_consen 89 WRVVFKPPA 97 (331)
T ss_pred eEEEecCCC
Confidence 777775433
No 248
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=33.70 E-value=66 Score=28.64 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=27.5
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHh
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTA 201 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i 201 (435)
.....+||+-|||..+|++.|..+...+|.+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~v 67 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHV 67 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhh
Confidence 3456789999999999999999999999865
No 249
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=33.03 E-value=82 Score=23.10 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=22.1
Q ss_pred cceEEEEEEcCHHHHHHHHHHhCCcee
Q 013837 335 SKGYGFCVYQDPAVTDIACAALNGLKM 361 (435)
Q Consensus 335 ~~G~afV~f~~~~~A~~Al~~l~g~~~ 361 (435)
.+||.|||=.+..+...|+..+.+...
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred CceEEEEEeCCHHHHHHHHhcccceee
Confidence 689999999999999999987765443
No 250
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=27.32 E-value=22 Score=34.13 Aligned_cols=60 Identities=10% Similarity=0.030 Sum_probs=45.4
Q ss_pred CeEEEcCCCCCCC--------HHHHHHHHHh--cCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHH
Q 013837 295 DRVFVGGLPYYFT--------ETQIKELLES--FGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354 (435)
Q Consensus 295 ~~l~V~nLp~~~t--------e~~l~~~F~~--~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~ 354 (435)
+.+|+.+++...+ .+++...|.. ++.+..|..-.+.......|..|++|.....|++++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3466666655443 4599999999 6677777777765456778899999999999998875
No 251
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=25.79 E-value=89 Score=22.10 Aligned_cols=22 Identities=14% Similarity=0.010 Sum_probs=18.3
Q ss_pred EEEEEEcCHHHHHHHHHHhCCc
Q 013837 338 YGFCVYQDPAVTDIACAALNGL 359 (435)
Q Consensus 338 ~afV~f~~~~~A~~Al~~l~g~ 359 (435)
+.+|.|.+..+|.+|-+.|...
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~ 24 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKN 24 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHC
Confidence 6899999999999888877543
No 252
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=25.65 E-value=3e+02 Score=21.66 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHh-cCC---eeEE-EEeecCCCCCcceEEEEEEcCHHHHH
Q 013837 305 YFTETQIKELLES-FGT---LHGF-DLVKDRDTGNSKGYGFCVYQDPAVTD 350 (435)
Q Consensus 305 ~~te~~l~~~F~~-~G~---v~~v-~i~~~~~tg~~~G~afV~f~~~~~A~ 350 (435)
++..++|++-+.. |-. +..+ .+-..-..|++.|||.| |.+.+.|.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 4667777766654 322 2112 12222345788999988 77777655
No 253
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=25.55 E-value=81 Score=26.83 Aligned_cols=70 Identities=11% Similarity=0.019 Sum_probs=42.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCC--CcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG--NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg--~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
.++|.. +.....++|.++-+ |.+..|.+-... .+ .-+|-.||+|.+.++|.+.++. ++....-..|...+
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKRSG 183 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHHHH
Confidence 355655 33333345555444 677777665542 23 4578899999999999987773 55554444444444
No 254
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=24.59 E-value=24 Score=24.74 Aligned_cols=39 Identities=10% Similarity=0.143 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhC
Q 013837 309 TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN 357 (435)
Q Consensus 309 ~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~ 357 (435)
++|.+.|..+.....+ ++ -.+|..|.+.++|..++.++.
T Consensus 27 ~~v~~~~~~~~~f~k~--vk--------L~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKI--VK--------LKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhh--hh--------hhhccCCCCHHHHHHHHHHhh
Confidence 6888887765443221 11 258999999999998887653
No 255
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=24.12 E-value=3.1e+02 Score=20.43 Aligned_cols=44 Identities=20% Similarity=0.260 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCC-eeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHh
Q 013837 309 TQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356 (435)
Q Consensus 309 ~~l~~~F~~~G~-v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l 356 (435)
+.+.++++.+|. ++++.+.. |..-..+.+++.+.+.|.++.-.+
T Consensus 23 ~a~~~~~e~~Gg~l~~~y~t~----G~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 23 EAVRALIEALGGKLKSFYWTL----GEYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHcCCEEEEEEEec----CCCCEEEEEEcCCHHHHHHHHHHH
Confidence 567788888875 77676654 445677889999999888776544
No 256
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=23.27 E-value=98 Score=29.23 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=25.5
Q ss_pred EEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 013837 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (435)
Q Consensus 339 afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~ 374 (435)
|||.|.+..+|..|++.+.... +..+.|..|-+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc
Confidence 7999999999999999664443 355577777544
No 257
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=22.67 E-value=86 Score=23.06 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=13.4
Q ss_pred CCCCHHHHHHHHHhcCCe
Q 013837 304 YYFTETQIKELLESFGTL 321 (435)
Q Consensus 304 ~~~te~~l~~~F~~~G~v 321 (435)
...|+++|-+++..|..+
T Consensus 60 ~~Pt~EevDdfL~~y~~l 77 (85)
T PF12091_consen 60 SEPTQEEVDDFLGGYDAL 77 (85)
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 346788899988888653
No 258
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=22.67 E-value=84 Score=32.97 Aligned_cols=25 Identities=12% Similarity=0.284 Sum_probs=19.3
Q ss_pred CCCCeEEEcCCCCCCC--HHHHHHHHH
Q 013837 292 EGPDRVFVGGLPYYFT--ETQIKELLE 316 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~t--e~~l~~~F~ 316 (435)
..++.|.|-+|+..+| ++-|+.+|.
T Consensus 507 ~~~~VvLiDElD~Lvtr~QdVlYn~fd 533 (767)
T KOG1514|consen 507 RSTTVVLIDELDILVTRSQDVLYNIFD 533 (767)
T ss_pred CCCEEEEeccHHHHhcccHHHHHHHhc
Confidence 3456788999998888 677777776
No 259
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=22.50 E-value=26 Score=37.99 Aligned_cols=8 Identities=63% Similarity=1.045 Sum_probs=3.5
Q ss_pred hCCceecC
Q 013837 241 LDGIIFEG 248 (435)
Q Consensus 241 l~~~~~~g 248 (435)
+.|..+.|
T Consensus 350 l~~i~v~g 357 (997)
T KOG0334|consen 350 LDGIKVKG 357 (997)
T ss_pred ccceeecc
Confidence 44444443
No 260
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=21.55 E-value=2.4e+02 Score=23.41 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=25.6
Q ss_pred eeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCc
Q 013837 321 LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL 359 (435)
Q Consensus 321 v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~ 359 (435)
|.+|.++.. -.||.||+....+++..++..+.|.
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCCE
Confidence 555555443 4899999999889999999877653
No 261
>PF14893 PNMA: PNMA
Probab=21.25 E-value=71 Score=30.41 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.3
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHH
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVM 199 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G 199 (435)
..+.|.|.+||.++++.+|.+.+...-
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l 43 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAAL 43 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999888653
No 262
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.49 E-value=1.5e+02 Score=30.09 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=43.9
Q ss_pred EEEcCCCCCCC---HHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 013837 297 VFVGGLPYYFT---ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTL 366 (435)
Q Consensus 297 l~V~nLp~~~t---e~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l 366 (435)
=+||||+.-.. -..+..+-++||+|-.+++-.. -.|.-.+.+.|..|+. .||..|.+++.
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 36777765433 3556666678999987776332 3577889999999998 58999998886
No 263
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=20.42 E-value=3.4e+02 Score=19.52 Aligned_cols=66 Identities=15% Similarity=0.204 Sum_probs=42.4
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec--CCCcEEEEEecCHHHHHHHHHhCCce
Q 013837 177 VYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN--HEKKFAFVEMRTVEEASNAMALDGII 245 (435)
Q Consensus 177 l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~--~~~g~afv~f~~~~~a~~a~~l~~~~ 245 (435)
|..++||..+|.++|.........+.... ++-..+..... ..+-||+.+=.+.+...++-+..|..
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~---~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~aG~p 70 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEM---PGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRAGLP 70 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhc---CCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHcCCC
Confidence 66788999999999999988776665422 01112222333 44567777777777777776555543
No 264
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=20.30 E-value=3.1e+02 Score=22.20 Aligned_cols=45 Identities=22% Similarity=0.398 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHH-hcC-C-eeEEEEee---cCCCCCcceEEEEEEcCHHHHH
Q 013837 305 YFTETQIKELLE-SFG-T-LHGFDLVK---DRDTGNSKGYGFCVYQDPAVTD 350 (435)
Q Consensus 305 ~~te~~l~~~F~-~~G-~-v~~v~i~~---~~~tg~~~G~afV~f~~~~~A~ 350 (435)
..+-.+|++.+. .|+ . ...|.|.. .-..|.+.|||.| |.+.+.|.
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~k 85 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALK 85 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 456778876655 466 2 22222221 1123567777776 66666554
Done!